isoform	chrom	strand	length	exons	structural_category	associated_gene	associated_transcript	ref_length	ref_exons	diff_to_TSS	diff_to_TTS	diff_to_gene_TSS	diff_to_gene_TTS	subcategory	RTS_stage	all_canonical	min_sample_cov	min_cov	min_cov_pos	sd_cov	FL	n_indels	n_indels_junc	bite	iso_exp	gene_exp	ratio_exp	FSM_class	coding	ORF_length	CDS_length	CDS_start	CDS_end	CDS_genomic_start	CDS_genomic_end	predicted_NMD	perc_A_downstream_TTS	seq_A_downstream_TTS	dist_to_cage_peak	within_cage_peak	pos_cage_peak	dist_to_polya_site	within_polya_site	polyA_motif	polyA_dist	ORF_seq	TSS_genomic_coord	TTS_genomic_coord	experiment_id	entry_id	LRGASP_id
ENSMUSG00000000001.5_108014718_108053462_1	chr3	-	3140	9	FSM	ENSMUSG00000000001.5	ENSMUST00000000001.5	3262	9	0	122	0	-122	multi-exon	FALSE	canonical	3	376	junction_4	42.0652395095998	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAGATAATCCAAATTTA	NA	False	NA	-19	True	NA	NA	NA	108053462	108014717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_108016633_108016718_108016929_108019250_108019405_108019788_108019919_108023078_108023208_108025616_108025775_108030857_108031000_108031110_108031154_108053203
ENSMUSG00000000001.5_108015482_108053462_1	chr3	-	2376	9	FSM	ENSMUSG00000000001.5	ENSMUST00000000001.5	3262	9	0	886	0	-886	multi-exon	FALSE	canonical	3	376	junction_4	42.0652395095998	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCTACGGTTGCTCCGTG	NA	False	NA	NA	False	ATTAAA	-17	NA	108053462	108015481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_108016633_108016718_108016929_108019250_108019405_108019788_108019919_108023078_108023208_108025616_108025775_108030857_108031000_108031110_108031154_108053203
ENSMUSG00000000028.16_18599203_18630344_1	chr16	-	1848	19	NNC	ENSMUSG00000000028.16	novel	2143	20	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	123.104655366235	2414	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCCTCTGGGTCTGTGAT	NA	False	NA	-8	True	AATAAA	-15	NA	18630344	18599202	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620595_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264
ENSMUSG00000000028.16_18599203_18630344_2	chr16	-	1850	19	NNC	ENSMUSG00000000028.16	novel	2143	20	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	123.061524811327	2401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCCTCTGGGTCTGTGAT	NA	False	NA	-8	True	AATAAA	-15	NA	18630344	18599202	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_18599324_18600645_18600705_18603550_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264
ENSMUSG00000000078.8_5911540_5917679_1	chr13	+	1452	4	FSM	ENSMUSG00000000078.8	ENSMUST00000000080.8	4225	4	59	2714	0	405	multi-exon	FALSE	canonical	3	176	junction_1	9.7410927974683	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTTTGAATGTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	5911539	5917679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_5911842_5914766_5915344_5916637_5916762_5917230
ENSMUSG00000000078.8_5911540_5917794_1	chr13	+	1567	4	FSM	ENSMUSG00000000078.8	ENSMUST00000000080.8	4225	4	59	2599	0	520	multi-exon	FALSE	canonical	3	176	junction_1	9.7410927974683	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAAAGTTAAAATAAT	NA	False	NA	NA	False	NA	NA	NA	5911539	5917794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_5911842_5914766_5915344_5916637_5916762_5917230
ENSMUSG00000000078.8_5911540_5918112_1	chr13	+	1885	4	FSM	ENSMUSG00000000078.8	ENSMUST00000000080.8	4225	4	59	2281	0	838	multi-exon	FALSE	canonical	3	176	junction_1	9.7410927974683	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGTCTCCAATCTTGATT	NA	False	NA	NA	False	TATAAA	-18	NA	5911539	5918112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_5911842_5914766_5915344_5916637_5916762_5917230
ENSMUSG00000000088.8_57428557_57439710_1	chr9	+	644	5	NNC	ENSMUSG00000000088.8	novel	645	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3847.76476509414	26502	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTCTTGTGATGTTGTC	372	False	NA	23	True	AATAAA	-23	NA	57428556	57439710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_57428699_57436238_57436356_57437523_57437646_57438958_57439076_57439564
ENSMUSG00000000125.6_103703084_103707231_1	chr11	+	840	2	ISM	ENSMUSG00000000125.6	ENSMUST00000000127.6	3076	5	38108	1552	38108	-1552	3prime_fragment	FALSE	canonical	2	4	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAACAGGCTGGGCTAGTG	5338	False	NA	NA	False	NA	NA	NA	103703083	103707231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_103703595_103706902
ENSMUSG00000000127.16_64203017_64446192_1	chr17	+	2707	18	FSM	ENSMUSG00000000127.16	ENSMUST00000000129.14	2973	18	0	266	0	0	multi-exon	FALSE	canonical	3	115	junction_9	21.9155346145023	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGTATTAGCTAACCACAG	NA	False	NA	4	True	AATAAA	-15	NA	64203016	64446192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288474_64288682_64298588_64298712_64336284_64336342_64342441_64342558_64344564_64344660_64385846_64385971_64440435_64440591_64444704_64444828_64445869
ENSMUSG00000000127.16_64385901_64446192_1	chr17	+	671	4	ISM	ENSMUSG00000000127.16	ENSMUST00000038080.7	2068	14	140934	0	140934	0	3prime_fragment	FALSE	canonical	3	158	junction_2	15.369522511198	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGTATTAGCTAACCACAG	NA	False	NA	4	True	AATAAA	-15	NA	64385900	64446192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_64385971_64440435_64440591_64444704_64444828_64445869
ENSMUSG00000000127.16_64385901_64446491_1	chr17	+	970	4	ISM	ENSMUSG00000000127.16	ENSMUST00000038080.7	2068	14	140934	-299	140934	0	3prime_fragment	FALSE	canonical	3	158	junction_2	15.369522511198	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTGGACTTCCTAGGGT	NA	False	NA	NA	False	TATAAA	-20	NA	64385900	64446491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_64385971_64440435_64440591_64444704_64444828_64445869
ENSMUSG00000000134.18_7630198_7641441_1	chrX	+	2914	10	NIC	ENSMUSG00000000134.18	novel	2943	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	87.2919042249043	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTCCCGTTCTTGTT	NA	False	NA	25	True	AATAAA	-36	NA	7630197	7641441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_7630238_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ENSMUSG00000000168.11_50547080_50570828_1	chr9	-	2633	14	NNC	ENSMUSG00000000168.11	novel	4035	14	NA	NA	252	748	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	343.843847866988	1235	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGTTGTAGAAGTGGAGCT	NA	False	NA	0	True	AATAAA	-23	NA	50570828	50547079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_50547855_50548755_50548893_50549220_50549384_50551523_50551640_50555325_50555434_50555740_50555834_50556338_50556407_50560931_50561067_50562046_50562239_50564921_50565049_50569144_50569299_50569464_50569590_50569987_50570090_50570490
ENSMUSG00000000168.11_50547652_50570828_1	chr9	-	2061	14	NNC	ENSMUSG00000000168.11	novel	4035	14	NA	NA	252	176	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	343.843847866988	750	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCACTAGTTAATTTTAT	NA	False	NA	-5	True	ATTAAA	-18	NA	50570828	50547651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_50547855_50548755_50548893_50549220_50549384_50551523_50551640_50555325_50555434_50555740_50555834_50556338_50556407_50560931_50561067_50562046_50562239_50564921_50565049_50569144_50569299_50569464_50569590_50569987_50570090_50570490
ENSMUSG00000000168.11_50569448_50570828_1	chr9	-	582	3	ISM	ENSMUSG00000000168.11	ENSMUST00000034567.4	4035	14	252	23515	252	-14115	5prime_fragment	FALSE	canonical	3	1166	junction_2	138.5	103	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAAAATCTTTGTAAT	NA	False	NA	NA	False	AGTAAA	-9	NA	50570828	50569447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_50569590_50569987_50570090_50570490
ENSMUSG00000000168.11_50569448_50570828_2	chr9	-	980	2	NIC	ENSMUSG00000000168.11	novel	4035	14	NA	NA	252	-14115	intron_retention	FALSE	canonical	3	1166	junction_1	0	67	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAAAATCTTTGTAAT	NA	False	NA	NA	False	AGTAAA	-9	NA	50570828	50569447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_50570090_50570490
ENSMUSG00000000171.6_50507657_50515116_1	chr9	-	1240	4	NNC	ENSMUSG00000000171.6	novel	1231	4	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	673.589555210656	9966	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTATATAATGAAAATACAT	NA	False	NA	NA	False	AATAAA	-3	NA	50515116	50507656	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_50508551_50510060_50510206_50511847_50511965_50515032
ENSMUSG00000000171.6_50507657_50515116_2	chr9	-	1288	5	NNC	ENSMUSG00000000171.6	novel	1231	4	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	697.644967014025	9856	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTATATAATGAAAATACAT	NA	False	NA	NA	False	AATAAA	-3	NA	50515116	50507656	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_50508551_50510060_50510206_50510767_50510821_50511847_50511965_50515037
ENSMUSG00000000171.6_50507657_50515116_3	chr9	-	1228	4	NNC	ENSMUSG00000000171.6	novel	1231	4	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	646.50186903571	9820	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTATATAATGAAAATACAT	NA	False	NA	NA	False	AATAAA	-3	NA	50515116	50507656	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_50508551_50510067_50510206_50511847_50511965_50515037
ENSMUSG00000000194.14_31042363_31104610_1	chr2	+	1922	18	FSM	ENSMUSG00000000194.14	ENSMUST00000056433.7	6134	18	35	4177	0	32	multi-exon	FALSE	canonical	1	139	junction_14	88.5769073297929	866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCTTGCTAATTGGGAG	NA	False	NA	7	True	AGTAAA	-15	NA	31042362	31104610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_31042494_31057032_31057156_31058175_31058227_31058808_31058892_31061953_31062094_31064213_31064252_31066909_31066967_31067796_31067908_31068265_31068400_31073591_31073668_31074809_31074884_31075500_31075619_31078694_31078826_31081858_31081903_31097690_31097741_31099078_31099163_31100460_31100583_31104255
ENSMUSG00000000253.14_45674605_45699858_1	chr13	+	993	6	NNC	ENSMUSG00000000253.14	novel	331	2	NA	NA	7289	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	25.5389897999118	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGCTGGAGTTTGCGT	NA	False	NA	22	True	AATATA	-16	NA	45674604	45699858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_45674696_45683183_45683266_45685769_45685877_45692500_45692544_45695954_45696115_45699348
ENSMUSG00000000275.17_88909796_88911119_1	chr11	+	1278	2	NNC	ENSMUSG00000000275.17	novel	5566	8	NA	NA	19594	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACATTGTCCTGCCTTTTG	3864	False	NA	24	True	NA	NA	NA	88909795	88911119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_88910662_88910707
ENSMUSG00000000278.11_88814846_88846291_1	chr11	-	2092	13	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	15	junction_3	719.324466079112	2904	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5201	False	NA	-9	True	AATAAA	-20	NA	88846291	88814845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821167_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
ENSMUSG00000000295.14_31179775_31204198_1	chr10	+	843	6	NNC	ENSMUSG00000000295.14	novel	631	3	NA	NA	-9604	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	200.207292574471	1947	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGACTCTGTCTTCTGTTTT	NA	False	NA	18	True	ATTAAA	-25	NA	31179774	31204198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_31179863_31190510_31190633_31192288_31192392_31196263_31196333_31202017_31202157_31203876
ENSMUSG00000000295.14_31189401_31204200_1	chr10	+	962	6	NNC	ENSMUSG00000000295.14	novel	858	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	200.207292574471	2533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTGTCTTCTGTTTTGC	NA	False	NA	20	True	ATTAAA	-27	NA	31189400	31204200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_31189606_31190510_31190633_31192288_31192392_31196263_31196333_31202017_31202157_31203876
ENSMUSG00000000295.14_31189401_31204200_2	chr10	+	733	5	NIC	ENSMUSG00000000295.14	novel	858	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	211.636923763317	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTGTCTTCTGTTTTGC	NA	False	NA	20	True	ATTAAA	-27	NA	31189400	31204200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_31189480_31190510_31190633_31196263_31196333_31202017_31202157_31203876
ENSMUSG00000000296.9_31208372_31321826_1	chr10	-	1180	7	FSM	ENSMUSG00000000296.9	ENSMUST00000000305.7	1308	7	128	0	-11	0	multi-exon	FALSE	canonical	3	31	junction_2	224.403654159196	832	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTGGATCTTTTATTTC	NA	False	NA	-3	True	ATTAAA	-17	NA	31321826	31208371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_31208966_31214180_31214242_31217135_31217175_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ENSMUSG00000000296.9_31208372_31321826_2	chr10	-	1195	8	FSM	ENSMUSG00000000296.9	ENSMUST00000213528.2	969	8	25	-251	-11	0	multi-exon	FALSE	canonical	3	22	junction_3	226.139563192327	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTGGATCTTTTATTTC	NA	False	NA	-3	True	ATTAAA	-17	NA	31321826	31208371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_31208966_31214180_31214242_31217135_31217175_31219007_31219023_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ENSMUSG00000000296.9_31208372_31321954_1	chr10	-	1208	5	FSM	ENSMUSG00000000296.9	ENSMUST00000214644.2	1103	5	-104	-1	0	0	multi-exon	FALSE	canonical	3	404	junction_1	42.7346463656832	1590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTGGATCTTTTATTTC	NA	False	NA	-3	True	ATTAAA	-17	NA	31321954	31208371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_31208966_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ENSMUSG00000000296.9_31208653_31321826_1	chr10	-	796	5	NNC	ENSMUSG00000000296.9	novel	827	6	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	208.650874668668	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAATAGACAACCTGG	NA	False	NA	25	True	NA	NA	NA	31321826	31208652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_31208966_31222606_31222702_31233863_31234017_31255210_31255327_31321707
ENSMUSG00000000296.9_31208653_31321826_2	chr10	-	899	7	FSM	ENSMUSG00000000296.9	ENSMUST00000000305.7	1308	7	128	281	-11	0	multi-exon	FALSE	canonical	3	31	junction_2	224.403654159196	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAATAGACAACCTGG	NA	False	NA	25	True	NA	NA	NA	31321826	31208652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_31208966_31214180_31214242_31217135_31217175_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ENSMUSG00000000308.15_121188257_121194218_1	chr2	+	1607	10	NIC	ENSMUSG00000000308.15	novel	1518	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	65.8743660217344	821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTGTGTTATTTCTAT	801	False	NA	32	True	AGTAAA	-20	NA	121188256	121194218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_121188430_121189276_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
ENSMUSG00000000308.15_121188388_121194218_1	chr2	+	1476	10	NIC	ENSMUSG00000000308.15	novel	1620	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	65.8743660217344	767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTGTGTTATTTCTAT	932	False	NA	32	True	AGTAAA	-20	NA	121188387	121194218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_121188430_121189276_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
ENSMUSG00000000326.14_18225636_18245129_1	chr16	-	1591	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	225	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	81.8299388298005	439	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGAAATTCACTGAGTTA	4113	False	NA	NA	False	ATTAAA	-18	NA	18245129	18225635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_18226039_18226277_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
ENSMUSG00000000326.14_18225636_18245354_1	chr16	-	1816	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	81.8299388298005	657	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGAAATTCACTGAGTTA	3888	False	NA	NA	False	ATTAAA	-18	NA	18245354	18225635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_18226039_18226277_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
ENSMUSG00000000326.14_18245188_18256562_1	chr16	-	556	4	NIC	ENSMUSG00000000326.14	novel	1866	5	NA	NA	-10960	-15675	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCTCAGGCGGTCAGGGC	NA	False	NA	NA	False	NA	NA	NA	18256562	18245187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_18245310_18248560_18248627_18255310_18255368_18256251
ENSMUSG00000000339.15_116282612_116301673_1	chr3	-	1410	11	FSM	ENSMUSG00000000339.15	ENSMUST00000000348.15	1594	11	184	0	0	0	multi-exon	FALSE	canonical	3	261	junction_7	31.9274176844918	2281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGCTGCTGCTTTTTTA	NA	False	NA	0	True	AATAAA	-20	NA	116301673	116282611	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_116282988_116286631_116286737_116287731_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298118_116300483_116300628_116301399_116301501_116301593
ENSMUSG00000000339.15_116282612_116301731_1	chr3	-	1468	11	FSM	ENSMUSG00000000339.15	ENSMUST00000000348.15	1594	11	126	0	-17	0	multi-exon	FALSE	canonical	3	261	junction_7	31.9274176844918	2324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGCTGCTGCTTTTTTA	NA	False	NA	0	True	AATAAA	-20	NA	116301731	116282611	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_116282988_116286631_116286737_116287731_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298118_116300483_116300628_116301399_116301501_116301593
ENSMUSG00000000340.11_116306777_116328850_1	chr3	+	903	5	ISM	ENSMUSG00000000340.11	ENSMUST00000000349.11	3301	11	58	14780	0	288	5prime_fragment	FALSE	canonical	3	175	junction_2	23.7749868559375	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCAGGTCATTGTGAATGC	NA	False	NA	NA	False	AAGAAA	-1	NA	116306776	116328850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_116306841_116313885_116314010_116317000_116317077_116326903_116327086_116328393
ENSMUSG00000000346.10_100513487_100517148_1	chr15	+	1581	3	ISM	ENSMUSG00000000346.10	ENSMUST00000000356.10	2135	4	257	1494	257	-181	5prime_fragment	FALSE	canonical	0	0	junction_1	674.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAAGTTACCGATTG	NA	False	NA	NA	False	NA	NA	NA	100513486	100517148	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_100513606_100514793_100514913_100515805
ENSMUSG00000000346.10_100513986_100518642_1	chr15	+	1977	4	NIC	ENSMUSG00000000346.10	novel	542	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	516	junction_1	340.746565972751	2569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAGCATTCTTTACTTAG	NA	False	NA	18	True	AATAAA	-25	NA	100513985	100518642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_100514204_100514793_100514913_100515805_100516052_100517248
ENSMUSG00000000355.14_37689532_37702303_1	chrX	+	630	5	NIC	ENSMUSG00000000355.14	novel	783	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	253.564094461341	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTAGTTTCAGAAAT	NA	False	NA	17	True	AATAAA	-19	NA	37689531	37702303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_37689656_37691452_37691551_37694815_37694950_37700642_37700711_37702097
ENSMUSG00000000355.14_37689532_37702303_2	chrX	+	829	7	NNC	ENSMUSG00000000355.14	novel	783	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	277.22538965013	1466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTAGTTTCAGAAAT	NA	False	NA	17	True	AATAAA	-19	NA	37689531	37702303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_37689656_37690228_37690275_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
ENSMUSG00000000355.14_37689532_37702303_3	chrX	+	778	6	NNC	ENSMUSG00000000355.14	novel	783	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	234.104762873377	1861	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTAGTTTCAGAAAT	NA	False	NA	17	True	AATAAA	-19	NA	37689531	37702303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_37689656_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702102
ENSMUSG00000000355.14_37689532_37702401_1	chrX	+	728	5	NIC	ENSMUSG00000000355.14	novel	783	6	NA	NA	0	98	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	253.564094461341	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGACTCAATGTCCTAT	NA	False	NA	10	True	ATTAAA	-23	NA	37689531	37702401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_37689656_37691452_37691551_37694815_37694950_37700642_37700711_37702097
ENSMUSG00000000355.14_37689532_37702401_2	chrX	+	927	7	NNC	ENSMUSG00000000355.14	novel	783	6	NA	NA	0	98	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	277.22538965013	3300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGACTCAATGTCCTAT	NA	False	NA	10	True	ATTAAA	-23	NA	37689531	37702401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_37689656_37690228_37690275_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
ENSMUSG00000000355.14_37689532_37702401_3	chrX	+	876	6	NNC	ENSMUSG00000000355.14	novel	783	6	NA	NA	0	98	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	234.104762873377	3559	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGACTCAATGTCCTAT	NA	False	NA	10	True	ATTAAA	-23	NA	37689531	37702401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_37689656_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702102
ENSMUSG00000000365.10_56640154_56647931_1	chr14	+	488	3	NNC	ENSMUSG00000000365.10	novel	2077	14	NA	NA	0	-31439	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_2	273.5	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCATTGTGAACTCTGTCT	NA	False	NA	NA	False	AATACA	-40	NA	56640153	56647931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_56640282_56643033_56643129_56647666
ENSMUSG00000000365.10_56640154_56663245_1	chr14	+	616	5	ISM	ENSMUSG00000000365.10	ENSMUST00000225361.2	1609	11	-3	16125	0	-16125	5prime_fragment	FALSE	canonical	3	453	junction_4	41.3581914498204	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCACCAGATCCAAAGTCTA	NA	False	NA	NA	False	AATAAA	-45	NA	56640153	56663245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056
ENSMUSG00000000365.10_56640154_56726892_1	chr14	+	3506	26	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	349	junction_12	57.9852946875326	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	8	True	ATTAAA	-16	NA	56640153	56726892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
ENSMUSG00000000365.10_56720593_56726892_1	chr14	+	540	5	ISM	ENSMUSG00000000365.10	ENSMUST00000223646.2	621	6	960	0	960	0	3prime_fragment	FALSE	canonical	3	417	junction_4	57.1286924408392	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	8	True	ATTAAA	-16	NA	56720592	56726892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
ENSMUSG00000000378.16_6496910_6546744_1	chr11	+	1661	9	NIC	ENSMUSG00000000378.16	novel	1858	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	133.856266196245	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCAGTTGTCAAGCATTT	NA	False	NA	15	True	AAAACA	-27	NA	6496909	6546744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_6497030_6534519_6534604_6535033_6535218_6539431_6539569_6540752_6540889_6543066_6543125_6543601_6543741_6544147_6544287_6546080
ENSMUSG00000000384.16_6565599_6576067_1	chr11	-	3138	12	FSM	ENSMUSG00000000384.16	ENSMUST00000000394.14	2290	12	-24	-824	0	0	multi-exon	FALSE	canonical	3	438	junction_8	40.423788103394	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGGGCCACTGGCTTTTC	NA	False	NA	-6	True	AATAAA	-18	NA	6576067	6565598	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
ENSMUSG00000000384.16_6566425_6576067_1	chr11	-	2390	12	NIC	ENSMUSG00000000384.16	novel	2347	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_8	147.44311131545	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAGCTATCTTCCCAGG	NA	False	NA	-29	True	AATAAA	-17	NA	6576067	6566424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570222_6570741_6571066_6573815_6574284_6575148_6575214_6575964
ENSMUSG00000000384.16_6566425_6576067_3	chr11	-	2254	12	NIC	ENSMUSG00000000384.16	novel	2347	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_11	154.867151813236	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAGCTATCTTCCCAGG	NA	False	NA	-29	True	AATAAA	-17	NA	6576067	6566424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6576022
ENSMUSG00000000399.11_126798959_126826088_1	chr6	-	999	9	NIC	ENSMUSG00000000399.11	novel	1445	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_4	424.624080069654	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAAAAGAGTCACTCTATT	NA	False	NA	-48	True	NA	NA	NA	126826088	126798958	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_126799153_126801898_126801966_126804502_126804599_126809434_126809512_126817460_126817603_126819083_126819176_126821270_126821369_126821753_126821925_126826026
ENSMUSG00000000399.11_126798959_126826088_3	chr6	-	1152	11	NNC	ENSMUSG00000000399.11	novel	1238	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	391.130873238102	4803	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAAAAGAGTCACTCTATT	NA	False	NA	-48	True	NA	NA	NA	126826088	126798958	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_126799153_126801898_126801966_126804502_126804599_126809434_126809512_126811391_126811460_126813181_126813285_126817460_126817603_126819083_126819176_126821270_126821369_126821753_126821907_126826026
ENSMUSG00000000439.10_115595558_115653491_1	chr6	+	2937	17	Fusion	ENSMUSG00000107994.2_ENSMUSG00000000439.10	novel	6230	8	NA	NA	7303	-606	multi-exon	TRUE	non_canonical	0	0	junction_1	0	177	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTATCCCGGGCGAGCTA	NA	False	NA	NA	False	NA	NA	NA	115595557	115653491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr6_+_115596371_115596519_115596655_115596745_115596878_115597169_115597289_115598776_115598824_115599837_115600015_115600424_115600510_115603251_115603370_115603672_115603801_115603899_115603928_115608175_115608330_115609857_115609957_115611513_115611672_115611938_115612042_115614559_115614673_115621370_115621604_115653196
ENSMUSG00000000439.10_115595558_115653596_1	chr6	+	3042	17	Fusion	ENSMUSG00000107994.2_ENSMUSG00000000439.10	novel	6230	8	NA	NA	7303	-501	multi-exon	FALSE	non_canonical	0	0	junction_1	0	188	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAACTCGGCTCGGGGAT	NA	False	NA	NA	False	NA	NA	NA	115595557	115653596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr6_+_115596371_115596519_115596655_115596745_115596878_115597169_115597289_115598776_115598824_115599837_115600015_115600424_115600510_115603251_115603370_115603672_115603801_115603899_115603928_115608175_115608330_115609857_115609957_115611513_115611672_115611938_115612042_115614559_115614673_115621370_115621604_115653196
ENSMUSG00000000441.18_115578922_115595647_1	chr6	-	2233	8	NIC	ENSMUSG00000000441.18	novel	3968	11	NA	NA	1632	16106	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	658	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAAACCTCAGAGCCGCC	NA	False	NA	NA	False	NA	NA	NA	115595647	115578921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_115578975_115586541_115586671_115587479_115587662_115588595_115588901_115590287_115590503_115591535_115591647_115594258_115594404_115594554
ENSMUSG00000000486.14_126813619_126817620_1	chr7	-	1533	11	NIC	ENSMUSG00000000486.14	novel	1486	11	NA	NA	-22	0	combination_of_known_junctions	TRUE	canonical	3	14	junction_10	96.582658898997	1736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGCTGCCGGAGTCTTC	NA	False	NA	-7	True	AATAAA	-18	NA	126817620	126813618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_126814017_126814120_126814212_126814452_126814619_126814830_126814928_126815039_126815142_126815861_126815980_126816072_126816208_126816790_126816915_126817142_126817230_126817312_126817404_126817496
ENSMUSG00000000544.15_165958036_165994079_1	chr1	+	2131	6	NIC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	10	junction_1	77.1974092829546	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	10	True	AATAAA	-19	NA	165958035	165994079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_165958174_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
ENSMUSG00000000544.15_165958036_165994079_2	chr1	+	2286	7	FSM	ENSMUSG00000000544.15	ENSMUST00000060833.14	2515	7	229	0	0	0	multi-exon	FALSE	canonical	3	176	junction_6	19.1398362932741	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	10	True	AATAAA	-19	NA	165958035	165994079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
ENSMUSG00000000544.15_165979792_165994078_1	chr1	+	2232	6	NNC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	21756	0	intron_retention	FALSE	canonical	2	8	junction_1	77.9717897704035	113	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTCTTTGTTCACCCAT	NA	False	NA	9	True	AATAAA	-18	NA	165979791	165994078	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_165980032_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
ENSMUSG00000000561.15_105866685_105875505_1	chr3	+	2111	10	FSM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	0	1571	0	662	multi-exon	FALSE	canonical	3	910	junction_4	50.9162953856864	1824	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCCTCCCCAGAGCTGT	NA	False	NA	12	True	AATAAA	-16	NA	105866684	105875505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
ENSMUSG00000000561.15_105866824_105875205_1	chr3	+	1672	10	FSM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	139	1871	0	362	multi-exon	FALSE	canonical	3	910	junction_4	50.9162953856864	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTGTTCACCCTTTCCT	NA	False	NA	15	True	AATAAA	-18	NA	105866823	105875205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
ENSMUSG00000000561.15_105866824_105875505_1	chr3	+	1955	10	NIC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	0	662	combination_of_known_junctions	FALSE	canonical	3	115	junction_8	275.350057782793	1367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCCTCCCCAGAGCTGT	NA	False	NA	12	True	AATAAA	-16	NA	105866823	105875505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873173_105873672_105873742_105874478
ENSMUSG00000000561.15_105866824_105875505_2	chr3	+	1972	10	FSM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	139	1571	0	662	multi-exon	FALSE	canonical	3	910	junction_4	50.9162953856864	1691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCCTCCCCAGAGCTGT	NA	False	NA	12	True	AATAAA	-16	NA	105866823	105875505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
ENSMUSG00000000563.18_105850018_105866562_1	chr3	-	1118	7	NNC	ENSMUSG00000000563.18	novel	1311	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1716.15572493356	9470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTATAAGTTTCATAC	NA	False	NA	-24	True	AATAAA	-12	NA	105866562	105850017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863348_105866163_105866215_105866463
ENSMUSG00000000563.18_105850018_105866562_2	chr3	-	1097	6	NNC	ENSMUSG00000000563.18	novel	1311	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2152.82673710636	868	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTATAAGTTTCATAC	NA	False	NA	-24	True	AATAAA	-12	NA	105866562	105850017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_105850374_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866437
ENSMUSG00000000563.18_105850018_105866562_3	chr3	-	1107	7	NNC	ENSMUSG00000000563.18	novel	1311	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1716.15572493356	19725	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTATAAGTTTCATAC	NA	False	NA	-24	True	AATAAA	-12	NA	105866562	105850017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866184_105866215_105866463
ENSMUSG00000000563.18_105850018_105866562_4	chr3	-	1103	6	NNC	ENSMUSG00000000563.18	novel	1311	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1822.08072269041	2525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTATAAGTTTCATAC	NA	False	NA	-24	True	AATAAA	-12	NA	105866562	105850017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866437
ENSMUSG00000000563.18_105850018_105866562_5	chr3	-	1097	6	NNC	ENSMUSG00000000563.18	novel	1311	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1822.08072269041	1392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTATAAGTTTCATAC	NA	False	NA	-24	True	AATAAA	-12	NA	105866562	105850017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866443
ENSMUSG00000000563.18_105850018_105866562_6	chr3	-	1101	6	NNC	ENSMUSG00000000563.18	novel	1311	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1822.08072269041	1167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTATAAGTTTCATAC	NA	False	NA	-24	True	AATAAA	-12	NA	105866562	105850017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863348_105866429
ENSMUSG00000000563.18_105850018_105866562_7	chr3	-	1108	7	NNC	ENSMUSG00000000563.18	novel	1311	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1738.84055399632	19630	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTATAAGTTTCATAC	NA	False	NA	-24	True	AATAAA	-12	NA	105866562	105850017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_105850374_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866463
ENSMUSG00000000563.18_105850018_105866562_8	chr3	-	1134	7	NNC	ENSMUSG00000000563.18	novel	1311	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_6	1728.67248359993	14392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTATAAGTTTCATAC	NA	False	NA	-24	True	AATAAA	-12	NA	105866562	105850017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866443
ENSMUSG00000000563.18_105850214_105866604_2	chr3	-	949	6	NNC	ENSMUSG00000000563.18	novel	1604	8	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1822.08072269041	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAATGATCAAGGTCCAC	NA	False	NA	-51	True	NA	NA	NA	105866604	105850213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866437
ENSMUSG00000000563.18_105860985_105866604_1	chr3	-	837	4	ISM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	811	10971	-12	0	internal_fragment	FALSE	canonical	3	4041	junction_1	425.662098644244	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAATAAAAGAAAAAAACCTA	NA	False	NA	NA	False	GATAAA	-23	NA	105866604	105860984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_105861498_105863211_105863358_105866177_105866215_105866463
ENSMUSG00000000568.16_100108457_100110467_1	chr5	-	830	2	ISM	ENSMUSG00000000568.16	ENSMUST00000019128.15	2000	8	16329	0	2142	0	3prime_fragment	FALSE	canonical	3	4376	junction_1	0	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAAATCTATTAATTTAA	NA	False	NA	-10	True	AATAAA	-15	NA	100110467	100108456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_100109193_100110373
ENSMUSG00000000568.16_100108862_100110467_1	chr5	-	425	2	ISM	ENSMUSG00000000568.16	ENSMUST00000112939.10	1670	8	16309	5	2142	0	3prime_fragment	FALSE	canonical	3	4376	junction_1	0	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATTGGCTCTTTTATCA	NA	False	NA	NA	False	AATAAA	-16	NA	100110467	100108861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_100109193_100110373
ENSMUSG00000000568.16_100108862_100110471_1	chr5	-	536	3	ISM	ENSMUSG00000000568.16	ENSMUST00000164833.2	699	6	2138	-165	2138	0	3prime_fragment	FALSE	canonical	3	104	junction_1	21.5	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATTGGCTCTTTTATCA	NA	False	NA	NA	False	AATAAA	-16	NA	100110471	100108861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_100109193_100109956_100110064_100110373
ENSMUSG00000000568.16_100108862_100126802_1	chr5	-	1024	7	NNC	ENSMUSG00000000568.16	novel	1117	8	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	2	184	junction_6	1739.8817408727	806	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATTGGCTCTTTTATCA	NA	False	NA	NA	False	AATAAA	-16	NA	100126802	100108861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_100109193_100110373_100110472_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115230_100126753
ENSMUSG00000000568.16_100108862_100126802_2	chr5	-	1029	7	NNC	ENSMUSG00000000568.16	novel	1117	8	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1793.44721602468	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATTGGCTCTTTTATCA	NA	False	NA	NA	False	AATAAA	-16	NA	100126802	100108861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_100109193_100110373_100110472_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115230_100126748
ENSMUSG00000000579.15_6697545_6875299_1	chr17	+	737	5	Fusion	ENSMUSG00000096255.3_ENSMUSG00000000579.15	novel	771	5	NA	NA	34	351	multi-exon	TRUE	canonical	3	2828	junction_1	2765.51862224791	35261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6697544	6875299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr17_+_6697638_6870885_6870928_6874010_6874135_6874472_6874551_6874899
ENSMUSG00000000579.15_6869070_6871666_1	chr17	+	947	2	FSM	ENSMUSG00000000579.15	ENSMUST00000149027.8	493	2	-121	-333	0	333	multi-exon	FALSE	canonical	3	5304	junction_1	0	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAGAAGAAATGTCTT	NA	False	NA	NA	False	NA	NA	NA	6869069	6871666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_6869236_6870885
ENSMUSG00000000579.15_6869070_6875299_1	chr17	+	859	6	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	0	351	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4229.55933402051	16902	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869069	6875299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_6869236_6870885_6870928_6872661_6872711_6874010_6874135_6874472_6874551_6874899
ENSMUSG00000000579.15_6869070_6875299_2	chr17	+	803	5	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	0	351	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3889.99166933555	24714	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869069	6875299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_6869236_6870885_6870928_6874017_6874135_6874472_6874551_6874899
ENSMUSG00000000579.15_6869191_6875299_1	chr17	+	565	4	NIC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	0	351	combination_of_known_splicesites	FALSE	canonical	2	48	junction_2	3761.62104535915	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869190	6875299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_6869236_6870885_6870928_6874472_6874551_6874899
ENSMUSG00000000579.15_6869191_6875299_10	chr17	+	611	4	NIC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	0	351	combination_of_known_splicesites	FALSE	canonical	3	27	junction_3	3491.09352495747	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869190	6875299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_6869236_6870885_6870928_6874010_6874135_6874899
ENSMUSG00000000579.15_6869191_6875299_2	chr17	+	808	5	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	0	351	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	3748.28990174186	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869190	6875299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472_6874670_6874899
ENSMUSG00000000579.15_6869191_6875299_3	chr17	+	958	7	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	0	351	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4243.08535541454	2152	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869190	6875299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_6869236_6870885_6870928_6872661_6872711_6873123_6873344_6874010_6874135_6874472_6874551_6874899
ENSMUSG00000000579.15_6869191_6875299_4	chr17	+	677	5	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	0	351	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	3750.246991866	4929	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869190	6875299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472_6874551_6874911
ENSMUSG00000000579.15_6869191_6875299_5	chr17	+	813	7	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	0	351	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3599.40748210344	496	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869190	6875299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_6869236_6870885_6870928_6872661_6872711_6873123_6873207_6873850_6873967_6874472_6874551_6874899
ENSMUSG00000000579.15_6869191_6875299_6	chr17	+	1038	4	FSM	ENSMUSG00000000579.15	ENSMUST00000124894.2	675	4	-12	-351	0	351	multi-exon	FALSE	canonical	3	5304	junction_1	1851.44670160631	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869190	6875299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472
ENSMUSG00000000579.15_6869191_6875299_7	chr17	+	682	5	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	0	351	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3889.99166933555	10529	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869190	6875299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_6869236_6870885_6870928_6874017_6874135_6874472_6874551_6874899
ENSMUSG00000000579.15_6869191_6875299_8	chr17	+	1376	3	FSM	ENSMUSG00000000579.15	ENSMUST00000138598.8	3250	3	0	1874	0	351	multi-exon	FALSE	canonical	3	5304	junction_1	1594.5	718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869190	6875299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_6869236_6870885_6870928_6874010
ENSMUSG00000000579.15_6869191_6875299_9	chr17	+	738	6	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	0	351	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4229.55933402051	5885	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869190	6875299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_6869236_6870885_6870928_6872661_6872711_6874010_6874135_6874472_6874551_6874899
ENSMUSG00000000581.9_17198171_17217234_1	chr11	+	1072	5	NNC	ENSMUSG00000000581.9	novel	416	2	NA	NA	-9408	610	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	283.165146160328	4357	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGGTTGTATGTCCTGACT	NA	False	NA	26	True	AATAAA	-27	NA	17198170	17217234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_17198269_17212647_17212795_17213608_17213676_17213950_17214007_17216530
ENSMUSG00000000581.9_17207579_17216695_1	chr11	+	515	5	FSM	ENSMUSG00000000581.9	ENSMUST00000000594.9	2981	5	-15	2481	0	71	multi-exon	FALSE	canonical	3	609	junction_3	54.4908249157599	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTGGTTTTGATGTACA	7316	False	NA	NA	False	AATAAA	-19	NA	17207578	17216695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_17207659_17212647_17212795_17213608_17213676_17213950_17214007_17216530
ENSMUSG00000000581.9_17207579_17217071_1	chr11	+	891	5	FSM	ENSMUSG00000000581.9	ENSMUST00000000594.9	2981	5	-15	2105	0	447	multi-exon	FALSE	canonical	3	609	junction_3	54.4908249157599	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTTTTCTGTTCAGTTA	7316	False	NA	NA	False	AATACA	-17	NA	17207578	17217071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_17207659_17212647_17212795_17213608_17213676_17213950_17214007_17216530
ENSMUSG00000000581.9_17207579_17217234_1	chr11	+	1054	5	FSM	ENSMUSG00000000581.9	ENSMUST00000000594.9	2981	5	-15	1942	0	610	multi-exon	FALSE	canonical	3	609	junction_3	54.4908249157599	4762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGGTTGTATGTCCTGACT	7316	False	NA	26	True	AATAAA	-27	NA	17207578	17217234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_17207659_17212647_17212795_17213608_17213676_17213950_17214007_17216530
ENSMUSG00000000594.8_54988941_55001724_1	chr11	+	1996	4	FSM	ENSMUSG00000000594.8	ENSMUST00000000608.8	4127	4	0	2131	0	-2131	multi-exon	FALSE	canonical	3	325	junction_3	15.195028426722	521	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGGCTCCTTTTCTTG	NA	False	NA	22	True	AATAAA	-15	NA	54988940	55001724	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_54989071_54994412_54994575_54999723_54999907_55000203
ENSMUSG00000000682.8_133806149_133819815_1	chr4	-	1879	15	NIC	ENSMUSG00000000682.8	novel	380	2	NA	NA	2534	3610	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTGAAAGAAAAGGGGGGA	NA	False	NA	NA	False	NA	NA	NA	133819815	133806148	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_133806289_133807646_133807774_133808090_133808127_133808399_133808537_133808663_133808791_133809039_133809180_133809266_133809394_133809725_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
ENSMUSG00000000682.8_133809626_133819815_1	chr4	-	1015	7	NIC	ENSMUSG00000000682.8	novel	380	2	NA	NA	2534	133	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGGCTCCGCCCCTATTG	NA	False	NA	NA	False	NA	NA	NA	133819815	133809625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_133809759_133809885_133809999_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
ENSMUSG00000000693.11_83028247_83031442_1	chr6	+	1952	6	NIC	ENSMUSG00000000693.11	novel	3252	9	NA	NA	1398	1899	intron_retention	FALSE	non_canonical	0	0	junction_1	0	197	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGCGGTCCTCTAGAACC	1958	False	NA	NA	False	NA	NA	NA	83028246	83031442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_83028616_83028722_83028819_83029453_83029524_83029678_83030052_83030309_83030505_83030593
ENSMUSG00000000693.11_83028247_83031442_3	chr6	+	1615	8	NIC	ENSMUSG00000000693.11	novel	3252	9	NA	NA	1398	1899	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2226	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGCGGTCCTCTAGAACC	1958	False	NA	NA	False	NA	NA	NA	83028246	83031442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593_83030799_83030901
ENSMUSG00000000731.16_77865865_77874128_1	chr10	-	994	5	ISM	ENSMUSG00000000731.16	ENSMUST00000140636.8	1615	12	5286	0	-34	0	3prime_fragment	FALSE	canonical	0	0	junction_3	7.79021822544144	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGGTACACCTGGTGGA	NA	False	NA	-9	True	ATTAAA	-16	NA	77874128	77865864	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_77866159_77867654_77867724_77870214_77870324_77872518_77872619_77873706
ENSMUSG00000000731.16_77865865_77874128_2	chr10	-	1038	8	NNC	ENSMUSG00000000731.16	novel	1926	14	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	6.82133507789333	29	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGGTACACCTGGTGGA	NA	False	NA	-9	True	ATTAAA	-16	NA	77874128	77865864	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_77866159_77867654_77867724_77870214_77870324_77870419_77870542_77871490_77871668_77872518_77872619_77873706_77873820_77874074
ENSMUSG00000000739.15_123869588_123884967_1	chr8	-	1121	7	NIC	ENSMUSG00000000739.15	novel	3805	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	23.3380947522857	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACAGACTCTGTCCCAGG	9785	False	NA	-7	True	AATAAA	-16	NA	123884967	123869587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_123869886_123872080_123872262_123874789_123874885_123875048_123875176_123875957_123876173_123884177_123884342_123884926
ENSMUSG00000000739.15_123869588_123884967_2	chr8	-	1106	7	FSM	ENSMUSG00000000739.15	ENSMUST00000000755.15	3805	7	42	2657	0	0	multi-exon	FALSE	canonical	3	57	junction_6	18.7764628073435	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACAGACTCTGTCCCAGG	9785	False	NA	-7	True	AATAAA	-16	NA	123884967	123869587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_123869886_123872080_123872262_123874789_123874885_123875048_123875176_123875957_123876173_123884177_123884327_123884926
ENSMUSG00000000740.13_123829089_123831983_1	chr8	+	757	6	NNC	ENSMUSG00000000740.13	novel	780	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	8523.81610313127	20132	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829088	123831983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_123829185_123829391_123829502_123829606_123829726_123829921_123830096_123830636_123830694_123831782
ENSMUSG00000000740.13_123829089_123831983_10	chr8	+	763	6	NNC	ENSMUSG00000000740.13	novel	780	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9214.53153231351	26183	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829088	123831983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_123829185_123829408_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
ENSMUSG00000000740.13_123829089_123831983_2	chr8	+	769	6	NNC	ENSMUSG00000000740.13	novel	780	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	8894.21577431085	55982	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829088	123831983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_123829185_123829391_123829502_123829583_123829715_123829921_123830096_123830636_123830694_123831782
ENSMUSG00000000740.13_123829089_123831983_3	chr8	+	773	6	NNC	ENSMUSG00000000740.13	novel	780	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	8523.81610313127	70472	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829088	123831983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_123829185_123829391_123829502_123829590_123829726_123829921_123830096_123830636_123830694_123831782
ENSMUSG00000000740.13_123829089_123831983_4	chr8	+	762	6	NNC	ENSMUSG00000000740.13	novel	780	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	27	junction_3	8883.86001690707	46657	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829088	123831983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_123829185_123829391_123829502_123829583_123829726_123829939_123830096_123830636_123830694_123831782
ENSMUSG00000000740.13_123829089_123831983_5	chr8	+	976	5	NIC	ENSMUSG00000000740.13	novel	780	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	17818	junction_4	2821.04696876886	10649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829088	123831983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_123829185_123829391_123829502_123829583_123830096_123830636_123830694_123831782
ENSMUSG00000000740.13_123829089_123831983_6	chr8	+	765	6	NNC	ENSMUSG00000000740.13	novel	780	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	9154.16570529505	28516	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829088	123831983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_123829185_123829391_123829502_123829583_123829726_123829921_123830096_123830651_123830694_123831782
ENSMUSG00000000740.13_123829089_123831983_7	chr8	+	756	5	NNC	ENSMUSG00000000740.13	novel	780	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	10233.2312956368	2373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829088	123831983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_123829185_123829391_123829502_123829583_123829726_123829921_123830129_123831782
ENSMUSG00000000740.13_123829089_123831983_8	chr8	+	758	5	NNC	ENSMUSG00000000740.13	novel	780	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	10233.2312956368	2864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829088	123831983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_123829185_123829391_123829502_123829583_123829726_123829921_123830096_123831747
ENSMUSG00000000740.13_123829089_123831983_9	chr8	+	762	6	NNC	ENSMUSG00000000740.13	novel	780	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	9284.03162424601	19334	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829088	123831983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_123829185_123829391_123829502_123829583_123829726_123829921_123830096_123830636_123830676_123831782
ENSMUSG00000000751.14_75191176_75239136_1	chr11	-	2879	17	FSM	ENSMUSG00000000751.14	ENSMUST00000092907.12	5077	17	14	2184	0	0	multi-exon	FALSE	canonical	3	1486	junction_1	165.245638652734	783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTCTTTGACTGTAAAG	NA	False	NA	-16	True	AATAAA	-21	NA	75239136	75191175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
ENSMUSG00000000751.14_75206430_75239136_1	chr11	-	1167	7	FSM	ENSMUSG00000000751.14	ENSMUST00000154894.2	716	7	-15	-436	0	436	multi-exon	FALSE	canonical	3	1534	junction_2	159.580091350881	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTAGTGGACTTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	75239136	75206429	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
ENSMUSG00000000751.14_75230705_75239136_1	chr11	-	735	4	ISM	ENSMUSG00000000751.14	ENSMUST00000154894.2	716	7	-15	23839	0	2099	5prime_fragment	FALSE	canonical	3	1885	junction_3	45.784519460427	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAATAAGGATGTACT	NA	False	NA	NA	False	NA	NA	NA	75239136	75230704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_75231225_75231853_75231933_75232969_75233021_75239051
ENSMUSG00000000751.14_75230859_75239136_1	chr11	-	581	4	ISM	ENSMUSG00000000751.14	ENSMUST00000154894.2	716	7	-15	23993	0	1945	5prime_fragment	FALSE	canonical	3	1885	junction_3	45.784519460427	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGGGTCCTTTTTTTTTT	NA	False	NA	NA	False	AAGAAA	-15	NA	75239136	75230858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_75231225_75231853_75231933_75232969_75233021_75239051
ENSMUSG00000000753.16_75300890_75313381_1	chr11	-	1391	8	FSM	ENSMUSG00000000753.16	ENSMUST00000000769.14	1832	8	146	295	0	0	multi-exon	TRUE	canonical	3	25	junction_1	3.91751691451488	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGTAGCCTCTGCAATAAA	5524	False	NA	-33	True	NA	NA	NA	75313381	75300889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_75301220_75301659_75301871_75304732_75304876_75305746_75305951_75306400_75306557_75307055_75307255_75308734_75308823_75313321
ENSMUSG00000000759.15_12664277_12666117_1	chr8	-	1116	2	ISM	ENSMUSG00000000759.15	ENSMUST00000168657.8	2018	8	21865	-2	21838	0	3prime_fragment	FALSE	canonical	3	171	junction_1	0	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATGTGGTTTCTGAA	6023	False	NA	1	True	ATTAAA	-18	NA	12666117	12664276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_12665297_12666021
ENSMUSG00000000759.15_12699703_12722108_1	chr8	-	1227	10	ISM	ENSMUSG00000000759.15	ENSMUST00000167547.8	5724	16	15	19293	-9	208	5prime_fragment	FALSE	canonical	3	153	junction_4	12.328828005938	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCACTGCCAAGGTCTCCT	NA	False	NA	NA	False	ATTAAA	-20	NA	12722108	12699702	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
ENSMUSG00000000787.13_13157499_13158150_1	chrX	+	542	2	ISM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	10290	2141	3475	-111	3prime_fragment	FALSE	canonical	3	520	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGCACACAGGTGTGAT	NA	False	NA	NA	False	AATAAA	-27	NA	13157498	13158150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_13157542_13157651
ENSMUSG00000000826.17_181162344_181191383_1	chr2	+	1097	7	NIC	ENSMUSG00000000826.17	novel	3664	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_1	77.7924589318699	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCTGTTTTATCCTTTT	7071	False	NA	22	True	TTTAAA	-18	NA	181162343	181191383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_181162491_181163027_181163081_181188163_181188282_181189132_181189347_181190462_181190635_181190718_181190794_181191065
ENSMUSG00000000827.19_181138958_181157180_1	chr2	+	982	7	FSM	ENSMUSG00000000827.19	ENSMUST00000000844.15	2950	7	-16	1984	0	0	multi-exon	FALSE	canonical	3	318	junction_5	284.174486695919	708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGTGCCATCCTTTCAA	NA	False	NA	36	True	CATAAA	-33	NA	181138957	181157180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181154831_181154881_181156872
ENSMUSG00000000827.19_181138958_181157180_2	chr2	+	922	6	FSM	ENSMUSG00000000827.19	ENSMUST00000108800.8	3475	6	-22	2575	0	0	multi-exon	FALSE	canonical	3	271	junction_3	391.498454658508	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGTGCCATCCTTTCAA	NA	False	NA	36	True	CATAAA	-33	NA	181138957	181157180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181154831_181154881_181156872
ENSMUSG00000000827.19_181138958_181157180_3	chr2	+	1024	8	FSM	ENSMUSG00000000827.19	ENSMUST00000149163.8	3603	8	0	2579	0	0	multi-exon	FALSE	canonical	3	669	junction_5	184.043805788132	2135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGTGCCATCCTTTCAA	NA	False	NA	36	True	CATAAA	-33	NA	181138957	181157180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181153366_181153409_181154831_181154881_181156872
ENSMUSG00000000827.19_181138958_181157686_1	chr2	+	1530	8	FSM	ENSMUSG00000000827.19	ENSMUST00000149163.8	3603	8	0	2073	0	-363	multi-exon	FALSE	canonical	3	669	junction_5	184.043805788132	3044	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGTTATGATACAATGTAG	NA	False	NA	19	True	AATAAA	-15	NA	181138957	181157686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181153366_181153409_181154831_181154881_181156872
ENSMUSG00000000827.19_181138958_181157686_2	chr2	+	1428	6	FSM	ENSMUSG00000000827.19	ENSMUST00000108800.8	3475	6	-22	2069	0	-363	multi-exon	FALSE	canonical	3	271	junction_3	391.498454658508	758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGTTATGATACAATGTAG	NA	False	NA	19	True	AATAAA	-15	NA	181138957	181157686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181154831_181154881_181156872
ENSMUSG00000000827.19_181138958_181157686_3	chr2	+	1488	7	FSM	ENSMUSG00000000827.19	ENSMUST00000000844.15	2950	7	-16	1478	0	-363	multi-exon	FALSE	canonical	3	318	junction_5	284.174486695919	1103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGTTATGATACAATGTAG	NA	False	NA	19	True	AATAAA	-15	NA	181138957	181157686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181154831_181154881_181156872
ENSMUSG00000000827.19_181138958_181157686_4	chr2	+	1557	9	FSM	ENSMUSG00000000827.19	ENSMUST00000108799.10	985	9	-66	-506	0	-363	multi-exon	FALSE	canonical	3	48	junction_5	401.298965080898	1143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGTTATGATACAATGTAG	NA	False	NA	19	True	AATAAA	-15	NA	181138957	181157686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181152296_181152324_181153366_181153409_181154831_181154881_181156872
ENSMUSG00000000827.19_181138958_181158550_1	chr2	+	2394	8	FSM	ENSMUSG00000000827.19	ENSMUST00000149163.8	3603	8	0	1209	0	501	multi-exon	FALSE	canonical	3	669	junction_5	184.043805788132	3484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCATTTGTTTGGTCTGT	NA	False	NA	10	True	AATAAA	-24	NA	181138957	181158550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181153366_181153409_181154831_181154881_181156872
ENSMUSG00000000876.12_154429139_154445608_1	chr2	-	1308	4	FSM	ENSMUSG00000000876.12	ENSMUST00000000896.11	2789	4	20	1461	0	-1461	multi-exon	FALSE	canonical	3	158	junction_1	13.4246870437348	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTTTTTGAGATGCATT	NA	False	NA	NA	False	AATAAA	-13	NA	154445608	154429138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_154430013_154434084_154434284_154438121_154438185_154445436
ENSMUSG00000000876.12_154429507_154445608_1	chr2	-	940	4	FSM	ENSMUSG00000000876.12	ENSMUST00000000896.11	2789	4	20	1829	0	-1829	multi-exon	FALSE	canonical	3	158	junction_1	13.4246870437348	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGGAGTCTGTGGCTTGA	NA	False	NA	-2	True	NA	NA	NA	154445608	154429506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_154430013_154434084_154434284_154438121_154438185_154445436
ENSMUSG00000000884.18_18317573_18383292_1	chr16	+	1477	8	FSM	ENSMUSG00000000884.18	ENSMUST00000090086.11	3549	8	-65	2137	0	0	multi-exon	FALSE	canonical	3	212	junction_1	38.76564858485	1052	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTCAAGGTGGGAACTT	NA	False	NA	17	True	AATAAA	-19	NA	18317572	18383292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
ENSMUSG00000000884.18_18317573_18383292_2	chr16	+	1336	7	NIC	ENSMUSG00000000884.18	novel	3549	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_2	97.958182688102	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTCAAGGTGGGAACTT	NA	False	NA	17	True	AATAAA	-19	NA	18317572	18383292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_18317702_18317795_18317891_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
ENSMUSG00000000884.18_18317573_18383292_3	chr16	+	1047	5	NIC	ENSMUSG00000000884.18	novel	3549	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	119.106045186632	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTCAAGGTGGGAACTT	NA	False	NA	17	True	AATAAA	-19	NA	18317572	18383292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_18317702_18317795_18317891_18366842_18366942_18371116_18371333_18382784
ENSMUSG00000000884.18_18317690_18383292_1	chr16	+	1360	8	FSM	ENSMUSG00000000884.18	ENSMUST00000090086.11	3549	8	52	2137	0	0	multi-exon	FALSE	canonical	3	212	junction_1	38.76564858485	864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTCAAGGTGGGAACTT	NA	False	NA	17	True	AATAAA	-19	NA	18317689	18383292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
ENSMUSG00000000884.18_18317690_18383292_2	chr16	+	930	5	NIC	ENSMUSG00000000884.18	novel	3549	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	119.106045186632	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTCAAGGTGGGAACTT	NA	False	NA	17	True	AATAAA	-19	NA	18317689	18383292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_18317702_18317795_18317891_18366842_18366942_18371116_18371333_18382784
ENSMUSG00000000884.18_18317690_18383292_3	chr16	+	1144	7	NIC	ENSMUSG00000000884.18	novel	3549	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_6	102.907725657503	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTCAAGGTGGGAACTT	NA	False	NA	17	True	AATAAA	-19	NA	18317689	18383292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18382784
ENSMUSG00000000884.18_18317690_18383292_4	chr16	+	1219	7	NIC	ENSMUSG00000000884.18	novel	3549	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_2	97.958182688102	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTCAAGGTGGGAACTT	NA	False	NA	17	True	AATAAA	-19	NA	18317689	18383292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_18317702_18317795_18317891_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
ENSMUSG00000000901.18_75771734_75773581_1	chr10	-	629	4	Fusion	ENSMUSG00000000901.18_ENSMUSG00000050157.7	novel	1221	7	NA	NA	-1251	1823	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7768	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGGGCAACTAACACGGCA	7841	False	NA	NA	False	NA	NA	NA	75773581	75771733	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr10_-_75771834_75772071_75772280_75773140_75773289_75773408
ENSMUSG00000000901.18_75771734_75773581_2	chr10	-	634	4	Fusion	ENSMUSG00000000901.18_ENSMUSG00000050157.7	novel	1221	7	NA	NA	-1251	1823	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16871	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGGGCAACTAACACGGCA	7841	False	NA	NA	False	NA	NA	NA	75773581	75771733	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr10_-_75771839_75772071_75772280_75773140_75773289_75773408
ENSMUSG00000000902.14_75732609_75757423_1	chr10	-	1357	7	NIC	ENSMUSG00000000902.14	novel	1660	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_6	367.805844011333	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTCTGTGCAGTAGCATA	6889	False	NA	-8	True	AATAAA	-14	NA	75757423	75732608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75757136
ENSMUSG00000000915.16_124142704_124170321_1	chr5	+	2510	4	NIC	ENSMUSG00000102725.3	novel	447	2	NA	NA	-7	26107	intron_retention	FALSE	non_canonical	0	0	junction_1	0	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCGCCGACCGGAAGCGC	NA	False	NA	NA	False	NA	NA	NA	124142703	124170321	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_124144802_124145671_124145755_124148750_124148923_124170164
ENSMUSG00000000916.16_135398807_135404997_1	chr5	+	1583	10	NNC	ENSMUSG00000000916.16	novel	2243	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	92.978027405656	417	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGATCACAGTTTTATT	NA	False	NA	18	True	AATAAA	-18	NA	135398806	135404997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404734
ENSMUSG00000000916.16_135398807_135404997_2	chr5	+	1711	11	NNC	ENSMUSG00000000916.16	novel	2243	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	113.163421652051	64	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGATCACAGTTTTATT	NA	False	NA	18	True	AATAAA	-18	NA	135398806	135404997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402104_135402228_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
ENSMUSG00000000916.16_135398807_135404997_3	chr5	+	1580	10	NIC	ENSMUSG00000000916.16	novel	2243	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	87.7620239027461	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGATCACAGTTTTATT	NA	False	NA	18	True	AATAAA	-18	NA	135398806	135404997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_135398931_135399044_135399168_135400094_135400270_135400359_135400461_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
ENSMUSG00000000958.11_54606901_54611705_1	chr14	-	909	5	ISM	ENSMUSG00000000958.11	ENSMUST00000000984.9	2132	10	35212	2	9919	0	3prime_fragment	FALSE	canonical	3	143	junction_2	16.7089048115069	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTCTGAGTGGCTTTATT	6300	False	NA	-6	True	AATAAA	-15	NA	54611705	54606900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670
ENSMUSG00000000959.8_54598298_54601244_1	chr14	+	730	3	FSM	ENSMUSG00000000959.8	ENSMUST00000198107.2	1438	3	0	708	0	-708	multi-exon	FALSE	canonical	3	527	junction_1	34.5	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGTTTACAGTTTCAAG	NA	False	NA	NA	False	NA	NA	NA	54598297	54601244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_54598375_54598778_54598926_54600738
ENSMUSG00000000959.8_54598298_54606097_1	chr14	+	1505	10	FSM	ENSMUSG00000000959.8	ENSMUST00000000985.7	2538	10	0	1033	0	3	multi-exon	TRUE	canonical	3	499	junction_4	29.1475598792348	3426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTGTCTTGTCTGGGCTT	NA	False	NA	24	True	AGTAAA	-1	NA	54598297	54606097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_54598375_54598778_54598926_54600738_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
ENSMUSG00000000959.8_54598298_54606097_2	chr14	+	1429	10	NNC	ENSMUSG00000000959.8	novel	2538	10	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	170.425466131599	3139	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTGTCTTGTCTGGGCTT	NA	False	NA	24	True	AGTAAA	-1	NA	54598297	54606097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_54598375_54598778_54598926_54600738_54600877_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
ENSMUSG00000000976.14_83644540_83655849_1	chr11	+	948	7	ISM	ENSMUSG00000000976.14	ENSMUST00000001002.8	5614	20	18	18731	0	-258	5prime_fragment	TRUE	canonical	3	50	junction_5	6.46572158042361	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTCTGTCCACTGAG	4035	False	NA	NA	False	NA	NA	NA	83644539	83655849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_83644768_83646535_83646644_83648135_83648277_83649114_83649231_83650129_83650245_83651724_83651827_83655711
ENSMUSG00000001016.13_90383464_90395273_1	chr3	+	1604	14	FSM	ENSMUSG00000001016.13	ENSMUST00000001042.10	2027	14	10	413	0	3	multi-exon	FALSE	canonical	3	1252	junction_8	67.3276893371464	2551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTGGTTTTATTTTTCT	NA	False	NA	16	True	ATTAAA	-16	NA	90383463	90395273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
ENSMUSG00000001018.16_90395680_90398301_1	chr3	-	1550	4	FSM	ENSMUSG00000001018.16	ENSMUST00000149884.2	1928	4	39	339	-1	0	multi-exon	FALSE	canonical	3	599	junction_3	50.1663898109747	657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAAAATTTATTTTAT	NA	False	NA	-29	True	AATAAA	-20	NA	90398301	90395679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_90396901_90397460_90397580_90397854_90397902_90398138
ENSMUSG00000001018.16_90396599_90398301_1	chr3	-	631	4	FSM	ENSMUSG00000001018.16	ENSMUST00000149884.2	1928	4	39	1258	-1	-292	multi-exon	FALSE	canonical	3	599	junction_3	50.1663898109747	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCTCTACCTTTTGGGTT	NA	False	NA	NA	False	AAGAAA	-1	NA	90398301	90396598	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_90396901_90397460_90397580_90397854_90397902_90398138
ENSMUSG00000001025.9_90520461_90521722_1	chr3	+	460	3	FSM	ENSMUSG00000001025.9	ENSMUST00000001051.9	731	3	272	-1	0	1	multi-exon	FALSE	canonical	3	31	junction_2	1	929	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATGTGTTCTGGCTTCCC	5469	False	NA	23	True	AATAAA	-23	NA	90520460	90521722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_90520534_90521049_90521212_90521497
ENSMUSG00000001036.18_61424418_61470500_1	chr11	-	1073	4	ISM	ENSMUSG00000001036.18	ENSMUST00000108713.8	4207	9	11	16343	-4	802	5prime_fragment	FALSE	canonical	3	259	junction_1	25.0377492776186	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCGAAAGCTTGTTGCAA	NA	False	NA	NA	False	AGTAAA	-17	NA	61470500	61424417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_61424508_61426096_61426210_61436975_61437738_61470392
ENSMUSG00000001036.18_61437575_61470500_1	chr11	-	271	2	ISM	ENSMUSG00000001036.18	ENSMUST00000001063.15	4243	10	11	29500	-4	0	5prime_fragment	FALSE	canonical	3	295	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGACAACTTCATCTA	NA	False	NA	NA	False	NA	NA	NA	61470500	61437574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_61437738_61470392
ENSMUSG00000001054.10_51514498_51526474_1	chr11	-	1699	10	FSM	ENSMUSG00000001054.10	ENSMUST00000001081.10	1946	10	249	-2	0	0	multi-exon	FALSE	canonical	3	245	junction_3	13.1581078605222	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGATTGCATGGTCTTGT	NA	False	NA	-7	True	AATATA	-21	NA	51526474	51514497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_51514974_51515055_51515211_51515301_51515405_51516495_51516662_51517562_51517730_51517825_51517927_51518448_51518590_51518706_51518853_51520302_51520489_51526416
ENSMUSG00000001054.10_51514498_51526580_1	chr11	-	1805	10	FSM	ENSMUSG00000001054.10	ENSMUST00000001081.10	1946	10	143	-2	0	0	multi-exon	FALSE	canonical	3	245	junction_3	13.1581078605222	886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGATTGCATGGTCTTGT	NA	False	NA	-7	True	AATATA	-21	NA	51526580	51514497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_51514974_51515055_51515211_51515301_51515405_51516495_51516662_51517562_51517730_51517825_51517927_51518448_51518590_51518706_51518853_51520302_51520489_51526416
ENSMUSG00000001056.4_51510598_51514264_2	chr11	+	718	4	NNC	ENSMUSG00000001056.4	novel	1042	4	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2516.18445711403	35973	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGTGTGTGGGTGTTCTT	NA	False	NA	24	True	AGTAAA	-19	NA	51510597	51514264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_51510805_51510908_51510968_51513311_51513418_51513918
ENSMUSG00000001056.4_51510598_51514264_3	chr11	+	709	4	NNC	ENSMUSG00000001056.4	novel	1042	4	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2516.18445711403	13985	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGTGTGTGGGTGTTCTT	NA	False	NA	24	True	AGTAAA	-19	NA	51510597	51514264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_51510805_51510908_51510959_51513311_51513418_51513918
ENSMUSG00000001056.4_51510598_51514264_4	chr11	+	708	4	NNC	ENSMUSG00000001056.4	novel	1042	4	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2525.75194524104	25674	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGTGTGTGGGTGTTCTT	NA	False	NA	24	True	AGTAAA	-19	NA	51510597	51514264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_51510805_51510908_51510979_51513311_51513397_51513918
ENSMUSG00000001056.4_51510598_51514264_5	chr11	+	728	4	NNC	ENSMUSG00000001056.4	novel	1042	4	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2525.75194524104	40280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGTGTGTGGGTGTTCTT	NA	False	NA	24	True	AGTAAA	-19	NA	51510597	51514264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_51510805_51510908_51510979_51513311_51513397_51513898
ENSMUSG00000001082.13_34790992_34793866_1	chr5	-	1409	11	NIC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_5	111.587454491981	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCTTTCCGTCTTACTA	NA	False	NA	-6	True	AATAAA	-18	NA	34793866	34790991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34791989_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753
ENSMUSG00000001082.13_34790992_34794492_1	chr5	-	2011	12	NIC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	-8	0	intron_retention	FALSE	canonical	3	174	junction_11	68.0427672998254	1203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCTTTCCGTCTTACTA	NA	False	NA	-6	True	AATAAA	-18	NA	34794492	34790991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794270
ENSMUSG00000001089.15_136197072_136268386_1	chr4	+	913	3	ISM	ENSMUSG00000001089.15	ENSMUST00000105849.9	7438	4	0	8244	0	408	5prime_fragment	FALSE	canonical	3	86	junction_2	41.5	128	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAGAAAGAAAATGAGAAAA	4157	False	NA	NA	False	AATGAA	-3	NA	136197071	136268386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_136197162_136248651_136248755_136267666
ENSMUSG00000001089.15_136197072_136268386_2	chr4	+	1005	4	ISM	ENSMUSG00000001089.15	ENSMUST00000170102.8	7526	5	0	8240	0	408	5prime_fragment	FALSE	canonical	3	55	junction_3	52.8225541054408	149	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAGAAAGAAAATGAGAAAA	4157	False	NA	NA	False	AATGAA	-3	NA	136197071	136268386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_136197162_136248651_136248755_136266435_136266528_136267666
ENSMUSG00000001098.16_114503554_114518544_1	chr5	-	1152	7	FSM	ENSMUSG00000001098.16	ENSMUST00000102581.11	3103	7	25	1926	0	129	multi-exon	FALSE	canonical	3	95	junction_4	16.3401346383682	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGATTGCTTCTGTGTTGG	NA	False	NA	NA	False	NA	NA	NA	114518544	114503553	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_114503928_114505269_114505466_114506402_114506456_114507001_114507089_114508119_114508290_114512956_114513171_114518486
ENSMUSG00000001100.11_78403019_78412997_1	chr11	+	1489	11	FSM	ENSMUSG00000001100.11	ENSMUST00000001127.11	2054	11	0	565	0	0	multi-exon	FALSE	canonical	3	1074	junction_9	50.3904752904753	2735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACGGCCATTTTTGTCT	1635	False	NA	15	True	AATAAA	-17	NA	78403018	78412997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412058_78412619
ENSMUSG00000001100.11_78403214_78412997_1	chr11	+	1294	11	FSM	ENSMUSG00000001100.11	ENSMUST00000001127.11	2054	11	195	565	0	0	multi-exon	FALSE	canonical	3	1074	junction_9	50.3904752904753	2438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACGGCCATTTTTGTCT	1830	False	NA	15	True	AATAAA	-17	NA	78403213	78412997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412058_78412619
ENSMUSG00000001100.11_78411977_78412997_1	chr11	+	459	2	ISM	ENSMUSG00000001100.11	ENSMUST00000133601.2	1329	11	8735	0	2820	0	3prime_fragment	FALSE	canonical	3	1150	junction_1	0	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACGGCCATTTTTGTCT	7260	False	NA	15	True	AATAAA	-17	NA	78411976	78412997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_78412058_78412619
ENSMUSG00000001105.16_78427269_78432315_1	chr11	+	811	6	FSM	ENSMUSG00000001105.16	ENSMUST00000128788.8	1141	6	82	248	0	0	multi-exon	FALSE	canonical	3	238	junction_1	100.921751867474	1564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGCACCCCA	NA	False	NA	40	True	NA	NA	NA	78427268	78432315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720_78431825_78432186
ENSMUSG00000001105.16_78427269_78432563_1	chr11	+	830	5	FSM	ENSMUSG00000001105.16	ENSMUST00000108275.2	582	5	0	-248	0	0	multi-exon	FALSE	canonical	3	256	junction_1	91.1125677390337	2448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCTGTGTGCATTATTT	NA	False	NA	24	True	AATAAA	-33	NA	78427268	78432563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78427403_78429659_78429789_78430785_78430872_78431720_78431825_78432186
ENSMUSG00000001120.16_76597692_76797755_1	chr10	-	2145	16	FSM	ENSMUSG00000001120.16	ENSMUST00000001148.11	2013	16	-133	1	-34	0	multi-exon	FALSE	canonical	3	60	junction_5	18.4407760742931	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTCTGACTTCTCTCT	1103	False	NA	-4	True	AATAAA	-17	NA	76797755	76597691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606874_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
ENSMUSG00000001127.13_20664053_20719128_1	chrX	+	1546	6	ISM	ENSMUSG00000001127.13	ENSMUST00000136451.8	2439	17	0	7608	0	0	5prime_fragment	TRUE	canonical	3	74	junction_1	119.456100723236	774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCTTTCTCCAACTATCT	1123	False	NA	NA	False	AATAAA	-12	NA	20664052	20719128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168
ENSMUSG00000001127.13_20664053_20719143_1	chrX	+	994	7	NNC	ENSMUSG00000001127.13	novel	2439	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_6	147.422766973837	266	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTGTCCTTCATTGTT	1123	False	NA	NA	False	AATAAA	-27	NA	20664052	20719143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20718834
ENSMUSG00000001127.13_20714817_20719128_1	chrX	+	953	7	NNC	ENSMUSG00000001127.13	novel	1520	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_6	124.993333155546	221	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCTTTCTCCAACTATCT	6308	False	NA	NA	False	AATAAA	-12	NA	20714816	20719128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20718834
ENSMUSG00000001134.10_20818162_20828217_1	chrX	-	570	7	NNC	ENSMUSG00000001134.10	novel	875	7	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_3	227.889410314155	1242	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	-8	True	ATTAAA	-20	NA	20828217	20818161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_20818263_20818446_20818511_20825596_20825700_20825973_20826042_20826176_20826259_20827918_20828026_20828172
ENSMUSG00000001134.10_20818162_20828217_3	chrX	-	467	6	NIC	ENSMUSG00000001134.10	novel	875	7	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	227.721760049408	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	-8	True	ATTAAA	-20	NA	20828217	20818161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_20818263_20818446_20818511_20825973_20826042_20826176_20826259_20827918_20828026_20828172
ENSMUSG00000001134.10_20818162_20828217_4	chrX	-	568	7	NNC	ENSMUSG00000001134.10	novel	875	7	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	230.766416293379	1863	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	-8	True	ATTAAA	-20	NA	20828217	20818161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_20818263_20818446_20818511_20825596_20825700_20825975_20826042_20826176_20826259_20827918_20828026_20828172
ENSMUSG00000001151.11_76268850_76278571_1	chr10	-	1070	7	ISM	ENSMUSG00000001151.11	ENSMUST00000001179.7	9331	42	-11	81749	-11	-29258	5prime_fragment	FALSE	canonical	3	104	junction_1	4.81028989655394	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGTTGGAGGTAGGCCC	NA	False	NA	NA	False	AAAAAG	-3	NA	76278571	76268849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_76268975_76269440_76269616_76269818_76269875_76272259_76272516_76272978_76273051_76275976_76276190_76278398
ENSMUSG00000001157.14_86668750_86681556_1	chr6	-	1594	4	ISM	ENSMUSG00000001157.14	ENSMUST00000001185.14	2949	14	28809	0	12319	0	3prime_fragment	FALSE	canonical	3	371	junction_2	22.0151463012778	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTGTTTAAAGTGA	2963	False	NA	-18	True	AATAAA	-20	NA	86681556	86668749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_86670034_86674430_86674519_86677493_86677640_86681480
ENSMUSG00000001158.14_86652133_86661500_1	chr6	-	878	6	NNC	ENSMUSG00000001158.14	novel	885	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	795.39876791456	11111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATAGACTTGTTTTGTTT	7650	False	NA	1	True	ATTAAA	-29	NA	86661500	86652132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837_86659952_86661424
ENSMUSG00000001158.14_86652133_86661500_2	chr6	-	875	6	NNC	ENSMUSG00000001158.14	novel	885	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	773.07738293136	11064	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATAGACTTGTTTTGTTT	7650	False	NA	1	True	ATTAAA	-29	NA	86661500	86652132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_86652563_86653203_86653263_86657888_86657969_86658572_86658686_86659837_86659959_86661428
ENSMUSG00000001175.17_100165788_100172762_1	chr12	+	710	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	94	3311	0	8	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	12334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAAGAAAAAGTTC	9259	False	NA	-8	True	NA	NA	NA	100165787	100172762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
ENSMUSG00000001175.17_100165788_100172762_2	chr12	+	702	5	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1532.38105166437	1936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAAGAAAAAGTTC	9259	False	NA	-8	True	NA	NA	NA	100165787	100172762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_100165980_100169814_100169978_100171871_100171979_100172356_100172493_100172658
ENSMUSG00000001175.17_100165788_100172762_3	chr12	+	705	5	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1532.38105166437	9938	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAAGAAAAAGTTC	9259	False	NA	-8	True	NA	NA	NA	100165787	100172762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_100166002_100169833_100169978_100171871_100171979_100172356_100172493_100172658
ENSMUSG00000001175.17_100165788_100173574_1	chr12	+	1522	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	94	2499	0	820	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	14686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGTTAAATGCTTTGTA	9259	False	NA	30	True	AATAAA	-19	NA	100165787	100173574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
ENSMUSG00000001247.17_30657200_30672612_1	chr7	-	1833	9	FSM	ENSMUSG00000001247.17	ENSMUST00000108116.10	2071	9	240	-2	135	0	multi-exon	TRUE	canonical	3	93	junction_6	34.291945118351	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAAGCCTCTTGTTTTGCT	NA	False	NA	-3	True	AATAAA	-17	NA	30672612	30657199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30665393_30665514_30671292_30671638_30672504
ENSMUSG00000001247.17_30657200_30672747_1	chr7	-	1968	9	FSM	ENSMUSG00000001247.17	ENSMUST00000108116.10	2071	9	105	-2	0	0	multi-exon	FALSE	canonical	3	93	junction_6	34.291945118351	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAAGCCTCTTGTTTTGCT	NA	False	NA	-3	True	AATAAA	-17	NA	30672747	30657199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30665393_30665514_30671292_30671638_30672504
ENSMUSG00000001270.10_111635795_111637128_1	chr12	-	915	4	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	791	0	at_least_one_novel_splicesite	FALSE	canonical	1	15	junction_3	3791.13882040154	1656	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111637128	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111636908
ENSMUSG00000001270.10_111635795_111637224_1	chr12	-	1011	4	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	695	0	at_least_one_novel_splicesite	FALSE	canonical	1	15	junction_3	3791.13882040154	1707	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111637224	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111636908
ENSMUSG00000001270.10_111635795_111638731_1	chr12	-	1508	7	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	0	intron_retention	FALSE	canonical	3	7551	junction_5	335.592345297419	4614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638731	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111638014_111638199_111638408_111638663
ENSMUSG00000001270.10_111635795_111638731_10	chr12	-	750	4	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3871.44592569179	1711	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638731	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_111636176_111636258_111636449_111638296_111638408_111638663
ENSMUSG00000001270.10_111635795_111638731_11	chr12	-	1418	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2750.28261998579	8476	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638731	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638212_111638408_111638663
ENSMUSG00000001270.10_111635795_111638731_12	chr12	-	1421	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2750.14931691101	10812	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638731	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637469_111637648_111637782_111637858_111638014_111638199_111638408_111638663
ENSMUSG00000001270.10_111635795_111638731_13	chr12	-	1418	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	2729.73509217825	10781	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638731	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638676
ENSMUSG00000001270.10_111635795_111638731_14	chr12	-	682	4	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3871.44592569179	1753	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638731	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_111636176_111636258_111636449_111638364_111638408_111638663
ENSMUSG00000001270.10_111635795_111638731_2	chr12	-	1415	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2746.09769138176	4203	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638731	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636704_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
ENSMUSG00000001270.10_111635795_111638731_3	chr12	-	737	4	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3871.44592569179	1735	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638731	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_111636176_111636258_111636449_111638309_111638408_111638663
ENSMUSG00000001270.10_111635795_111638731_4	chr12	-	1454	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_7	2719.30351977359	14577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638731	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638640
ENSMUSG00000001270.10_111635795_111638731_5	chr12	-	1678	6	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	0	intron_retention	FALSE	canonical	3	7551	junction_4	349.982056682911	2150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638731	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111638014_111638199_111638408_111638663
ENSMUSG00000001270.10_111635795_111638731_6	chr12	-	1116	7	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	2935.35822156153	1984	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638731	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637376_111637937_111638014_111638199_111638408_111638663
ENSMUSG00000001270.10_111635795_111638731_7	chr12	-	2265	5	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	0	intron_retention	FALSE	canonical	3	7551	junction_3	376.663643055711	1959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638731	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_111636176_111636258_111636449_111636595_111638014_111638199_111638408_111638663
ENSMUSG00000001270.10_111635795_111638731_8	chr12	-	710	4	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3871.44592569179	1688	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638731	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_111636176_111636258_111636449_111638336_111638408_111638663
ENSMUSG00000001270.10_111635795_111638731_9	chr12	-	1413	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2749.88108833818	4504	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638731	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_111636176_111636258_111636431_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
ENSMUSG00000001285.13_102240155_102246286_1	chr15	+	1181	7	FSM	ENSMUSG00000001285.13	ENSMUST00000113682.9	1480	7	11	288	0	0	multi-exon	FALSE	canonical	3	485	junction_2	12.1620995994387	1403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCCAGTCCCTGATCCA	5938	False	NA	16	True	AATAAA	-17	NA	102240154	102246286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102240389_102240524_102240638_102242636_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
ENSMUSG00000001285.13_102240352_102246286_1	chr15	+	1120	6	NIC	ENSMUSG00000001285.13	novel	1319	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	485	junction_1	11.5654658358408	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCCAGTCCCTGATCCA	6135	False	NA	16	True	AATAAA	-17	NA	102240351	102246286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_102240638_102242636_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
ENSMUSG00000001289.13_102234603_102239925_1	chr15	+	621	6	NNC	ENSMUSG00000001289.13	novel	1062	6	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	353.938186693666	9108	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTGGTCTATTCTTGCA	386	False	NA	30	True	AATAAA	-18	NA	102234602	102239925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_102234696_102234867_102234971_102235258_102235285_102236956_102237032_102237146_102237253_102239707
ENSMUSG00000001289.13_102234603_102239925_2	chr15	+	627	6	FSM	ENSMUSG00000001289.13	ENSMUST00000166658.8	1062	6	52	383	0	4	multi-exon	FALSE	canonical	3	835	junction_1	29.5932424718887	9681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTGGTCTATTCTTGCA	386	False	NA	30	True	AATAAA	-18	NA	102234602	102239925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102234696_102234867_102234971_102235252_102235285_102236956_102237032_102237146_102237253_102239707
ENSMUSG00000001289.13_102234603_102239925_3	chr15	+	577	6	NNC	ENSMUSG00000001289.13	novel	1062	6	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	350.749483249798	1566	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTGGTCTATTCTTGCA	386	False	NA	30	True	AATAAA	-18	NA	102234602	102239925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_102234696_102234867_102234921_102235252_102235285_102236956_102237032_102237146_102237253_102239707
ENSMUSG00000001289.13_102234603_102239925_4	chr15	+	610	5	NNC	ENSMUSG00000001289.13	novel	827	5	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	375.640369901852	6082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTGGTCTATTCTTGCA	386	False	NA	30	True	AATAAA	-18	NA	102234602	102239925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_102234696_102234867_102234986_102236956_102237032_102237146_102237253_102239707
ENSMUSG00000001305.6_186453289_186481409_1	chr1	-	1061	5	FSM	ENSMUSG00000001305.6	ENSMUST00000001339.6	1321	5	146	114	113	0	multi-exon	FALSE	canonical	3	944	junction_3	58.7962583843564	6815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAATCTCTGCTTCCCTG	NA	False	NA	-16	True	ATTAAA	-12	NA	186481409	186453288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_186453744_186468312_186468512_186469784_186469883_186471800_186472061_186481360
ENSMUSG00000001305.6_186453289_186481525_1	chr1	-	1177	5	FSM	ENSMUSG00000001305.6	ENSMUST00000001339.6	1321	5	30	114	-3	0	multi-exon	FALSE	canonical	3	944	junction_3	58.7962583843564	9800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAATCTCTGCTTCCCTG	NA	False	NA	-16	True	ATTAAA	-12	NA	186481525	186453288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_186453744_186468312_186468512_186469784_186469883_186471800_186472061_186481360
ENSMUSG00000001305.6_186453443_186481525_1	chr1	-	1023	5	FSM	ENSMUSG00000001305.6	ENSMUST00000001339.6	1321	5	30	268	-3	-154	multi-exon	FALSE	canonical	3	944	junction_3	58.7962583843564	2093	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACCTGTTTTTCTAAAA	NA	False	NA	-21	True	ATTAAA	-26	NA	186481525	186453442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_186453744_186468312_186468512_186469784_186469883_186471800_186472061_186481360
ENSMUSG00000001313.13_101349571_101357058_1	chr11	+	2768	6	NIC	ENSMUSG00000001313.13	novel	831	5	NA	NA	-6254	-4873	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGGGGCGGGGCCTTGCT	1555	False	NA	NA	False	NA	NA	NA	101349570	101357058	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_101351103_101351202_101351445_101353023_101353114_101353215_101353387_101353734_101353943_101356533
ENSMUSG00000001313.13_101355825_101362679_1	chr11	+	1275	5	NIC	ENSMUSG00000001313.13	novel	1578	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	68.3245929369506	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGACTTAGTTTTGTT	7809	False	NA	21	True	AATAAA	-21	NA	101355824	101362679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_101355971_101359758_101359847_101360838_101360949_101361543_101361679_101361883
ENSMUSG00000001323.18_74798999_74816503_2	chr11	-	1763	9	FSM	ENSMUSG00000001323.18	ENSMUST00000108448.8	3239	9	96	1380	-2	-1354	multi-exon	FALSE	non_canonical	0	0	junction_7	30.0956807532244	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACAGCCCACAGTCTCCG	NA	False	NA	NA	False	AATAAA	-23	NA	74816503	74798998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803959_74810262_74810489_74816444
ENSMUSG00000001323.18_74799381_74816503_2	chr11	-	1381	9	FSM	ENSMUSG00000001323.18	ENSMUST00000108448.8	3239	9	96	1762	-2	1186	multi-exon	FALSE	non_canonical	0	0	junction_7	30.0956807532244	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGAAAGTGTAAGTAATC	NA	False	NA	NA	False	TTTAAA	-21	NA	74816503	74799380	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803959_74810262_74810489_74816444
ENSMUSG00000001348.16_22038023_22042949_1	chr9	-	1341	5	NNC	ENSMUSG00000001348.16	novel	1419	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_4	83.7048385698222	430	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGTGTCATCAAGGTTA	9074	False	NA	-19	True	AATAAA	-21	NA	22042949	22038022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22042885
ENSMUSG00000001366.15_77988781_77998037_1	chr9	-	1224	7	NNC	ENSMUSG00000001366.15	novel	2155	13	NA	NA	-3119	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_6	19.2563120964414	220	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTGGATGGCCTTTAA	NA	False	NA	3	True	AATAAA	-31	NA	77998037	77988780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_77997955
ENSMUSG00000001366.15_77988781_78002505_1	chr9	-	1221	7	ISM	ENSMUSG00000001366.15	ENSMUST00000085311.13	2155	13	13433	0	-7587	0	3prime_fragment	FALSE	canonical	3	42	junction_6	7.6303487615064	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTGGATGGCCTTTAA	NA	False	NA	3	True	AATAAA	-31	NA	78002505	77988780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426
ENSMUSG00000001376.18_3498422_3603315_1	chr6	+	3532	28	FSM	ENSMUSG00000001376.18	ENSMUST00000001412.17	3788	28	40	216	0	0	multi-exon	FALSE	canonical	2	105	junction_25	21.3495308879564	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGTGTGTGAGACTACTA	2	True	NA	22	True	AATAAA	-19	NA	3498421	3603315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_3498556_3504868_3504938_3516621_3516745_3517788_3517861_3519216_3519271_3520206_3520278_3522255_3522374_3522682_3522719_3524092_3524176_3532157_3532201_3533471_3533571_3536831_3536973_3545509_3545643_3551012_3551105_3554995_3555091_3555367_3555467_3562267_3562359_3565515_3565693_3567734_3567854_3571001_3571109_3578793_3578916_3588005_3588087_3592426_3592576_3594017_3594115_3594742_3594902_3598471_3598594_3600127_3600318_3602659
ENSMUSG00000001380.8_36899743_36916210_1	chr18	-	1779	13	FSM	ENSMUSG00000001380.8	ENSMUST00000001416.8	1989	13	48	162	-35	0	multi-exon	FALSE	canonical	3	550	junction_8	68.8118913334671	1692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACAATGGCCAGGTAC	NA	False	NA	35	True	NA	NA	NA	36916210	36899742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36903952_36904148_36904248_36904380_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
ENSMUSG00000001383.10_36926929_36931335_1	chr18	+	926	6	FSM	ENSMUSG00000001383.10	ENSMUST00000001419.10	2310	6	0	1384	0	199	multi-exon	FALSE	canonical	3	554	junction_5	81.4331627778266	3003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGCTTTCCCCATATCCC	6616	False	NA	29	True	AATAAA	-20	NA	36926928	36931335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_36927013_36927349_36927444_36928093_36928218_36929089_36929164_36929551_36929698_36930931
ENSMUSG00000001383.10_36926929_36931728_1	chr18	+	1319	6	FSM	ENSMUSG00000001383.10	ENSMUST00000001419.10	2310	6	0	991	0	592	multi-exon	FALSE	canonical	3	554	junction_5	81.4331627778266	4834	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGTTTCTTCTGTTTCAC	6616	False	NA	31	True	ATTAAA	-28	NA	36926928	36931728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_36927013_36927349_36927444_36928093_36928218_36929089_36929164_36929551_36929698_36930931
ENSMUSG00000001403.14_164611818_164614827_2	chr2	+	957	5	NNC	ENSMUSG00000001403.14	novel	967	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	715.889787257787	3333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTCTCAAGTTACCCT	NA	False	NA	NA	False	AATAAA	-25	NA	164611817	164614827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164612001_164613194_164613300_164613773_164613979_164614086_164614147_164614423
ENSMUSG00000001403.14_164611818_164614827_4	chr2	+	969	5	NNC	ENSMUSG00000001403.14	novel	967	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	715.889787257787	9548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTCTCAAGTTACCCT	NA	False	NA	NA	False	AATAAA	-25	NA	164611817	164614827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164612005_164613186_164613300_164613773_164613979_164614086_164614147_164614423
ENSMUSG00000001403.14_164611818_164614827_5	chr2	+	957	6	NNC	ENSMUSG00000001403.14	novel	967	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	665.532688904159	9610	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTCTCAAGTTACCCT	NA	False	NA	NA	False	AATAAA	-25	NA	164611817	164614827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164612001_164612286_164612315_164613212_164613300_164613783_164613979_164614086_164614147_164614423
ENSMUSG00000001403.14_164611818_164614827_6	chr2	+	946	5	NNC	ENSMUSG00000001403.14	novel	967	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	715.889787257787	3166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTCTCAAGTTACCCT	NA	False	NA	NA	False	AATAAA	-25	NA	164611817	164614827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164612008_164613212_164613300_164613773_164613979_164614086_164614147_164614423
ENSMUSG00000001403.14_164611818_164614827_7	chr2	+	954	5	NNC	ENSMUSG00000001403.14	novel	967	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	715.889787257787	2141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTCTCAAGTTACCCT	NA	False	NA	NA	False	AATAAA	-25	NA	164611817	164614827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164612016_164613212_164613300_164613773_164613979_164614086_164614147_164614423
ENSMUSG00000001416.14_88204430_88229074_1	chr3	+	1964	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	689.31508756216	10479	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3811	False	NA	23	True	ATTAAA	-15	NA	88204429	88229074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220868_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
ENSMUSG00000001418.14_88232362_88235936_1	chr3	+	1503	6	FSM	ENSMUSG00000001418.14	ENSMUST00000177005.8	4219	6	32	2684	0	48	multi-exon	FALSE	canonical	3	936	junction_4	66.9489357645064	2009	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCCAGTCTCTCTTATT	4027	False	NA	14	True	AATAGA	-17	NA	88232361	88235936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_88232509_88232983_88233239_88233421_88233620_88233717_88233937_88235163_88235421_88235509
ENSMUSG00000001424.15_28886569_28888831_1	chr6	+	691	3	ISM	ENSMUSG00000001424.15	ENSMUST00000001460.14	3482	24	406222	0	6527	0	3prime_fragment	FALSE	canonical	3	712	junction_1	30.5	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTGGAGCCAGAACACTG	NA	False	NA	30	True	AATAAA	-31	NA	28886568	28888831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_28886617_28888077_28888123_28888233
ENSMUSG00000001436.16_76869046_76877392_1	chr10	+	578	3	NNC	ENSMUSG00000001436.16	novel	2347	6	NA	NA	0	-289	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	55	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTGTAAGTCAGAAAGCC	NA	False	NA	NA	False	NA	NA	NA	76869045	76877392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_76869182_76874183_76874418_76877184
ENSMUSG00000001440.6_97052358_97054842_1	chr11	-	1415	3	FSM	ENSMUSG00000001440.6	ENSMUST00000132633.2	643	3	206	-978	206	978	multi-exon	FALSE	canonical	3	1118	junction_2	60	5063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCTTCTGTCCCTTTC	NA	False	NA	-5	True	GATAAA	-19	NA	97054842	97052357	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_97053508_97054178_97054341_97054739
ENSMUSG00000001440.6_97052358_97056955_1	chr11	-	1868	7	ISM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	21752	1818	-729	978	3prime_fragment	FALSE	canonical	3	962	junction_5	83.2554636178445	5097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCTTCTGTCCCTTTC	NA	False	NA	-5	True	GATAAA	-19	NA	97056955	97052357	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872
ENSMUSG00000001440.6_97052868_97054842_1	chr11	-	905	3	FSM	ENSMUSG00000001440.6	ENSMUST00000132633.2	643	3	206	-468	206	468	multi-exon	FALSE	canonical	3	1118	junction_2	60	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATGCAGCACAAGAGACG	NA	False	NA	-35	True	CATAAA	-20	NA	97054842	97052867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_97053508_97054178_97054341_97054739
ENSMUSG00000001445.11_96932421_96939208_1	chr11	+	672	4	NIC	ENSMUSG00000001445.11	novel	1708	5	NA	NA	0	-136	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	229.382262222305	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTCGTTGTCTGGC	908	False	NA	NA	False	CATAAA	-17	NA	96932420	96939208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_96932479_96937855_96938021_96938238_96938384_96938904
ENSMUSG00000001445.11_96932421_96939817_2	chr11	+	1281	4	NIC	ENSMUSG00000001445.11	novel	1708	5	NA	NA	0	-222	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	229.382262222305	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTTAAGAATTATTTT	908	False	NA	20	True	AATAAA	-21	NA	96932420	96939817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_96932479_96937855_96938021_96938238_96938384_96938904
ENSMUSG00000001445.11_96932421_96940039_2	chr11	+	1503	4	NIC	ENSMUSG00000001445.11	novel	1708	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	229.382262222305	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTATGTTTATATCTGTA	908	False	NA	10	True	NA	NA	NA	96932420	96940039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_96932479_96937855_96938021_96938238_96938384_96938904
ENSMUSG00000001467.6_4132538_4154435_1	chr5	-	2227	10	FSM	ENSMUSG00000001467.6	ENSMUST00000001507.5	3931	10	311	1393	-14	742	multi-exon	FALSE	canonical	3	648	junction_6	50.6347365275053	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTACTGGTCCCAAATGGT	NA	False	NA	-13	True	AATAAA	-21	NA	4154435	4132537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
ENSMUSG00000001467.6_4150304_4154457_1	chr5	-	1474	3	FSM	ENSMUSG00000001467.6	ENSMUST00000199909.2	693	3	-36	-745	-36	745	multi-exon	FALSE	canonical	3	676	junction_2	72	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCAGTATTTTTTGTTTG	NA	False	NA	NA	False	AATAAA	-22	NA	4154457	4150303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_4151355_4152927_4153027_4154133
ENSMUSG00000001506.11_94841312_94842723_1	chr11	+	947	4	ISM	ENSMUSG00000001506.11	ENSMUST00000001547.8	5930	51	14262	1145	5118	-1145	3prime_fragment	FALSE	canonical	3	18	junction_2	9.67241208569794	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGTCCTCTTGCTTGAA	NA	False	NA	NA	False	AAAAAG	-4	NA	94841311	94842723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_94841400_94841534_94841726_94841926_94842170_94842298
ENSMUSG00000001518.13_128386407_128401704_1	chr6	-	2130	12	FSM	ENSMUSG00000001518.13	ENSMUST00000001559.11	2320	12	190	0	128	0	multi-exon	FALSE	canonical	3	237	junction_3	19.6628609101919	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCTCTCCAATCTGGAC	NA	False	NA	0	True	AATAAA	-24	NA	128401704	128386406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_128387381_128387455_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
ENSMUSG00000001525.11_36145697_36149124_1	chr17	-	1686	4	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	800	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4503.49930609521	31581	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCTTTCTCTTTCCAC	NA	False	NA	-32	True	NA	NA	NA	36149124	36145696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_36146927_36147054_36147166_36147519_36147629_36148888
ENSMUSG00000001525.11_36145697_36149124_2	chr17	-	1691	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	74	884	-15	800	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	31731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCTTTCTCTTTCCAC	NA	False	NA	-32	True	NA	NA	NA	36149124	36145696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
ENSMUSG00000001552.15_100261445_100267700_1	chr11	-	1462	6	ISM	ENSMUSG00000001552.15	ENSMUST00000001592.15	3205	14	20875	0	-2749	0	3prime_fragment	FALSE	canonical	3	472	junction_4	54.0014814611599	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	7039	False	NA	-17	True	AATAAA	-18	NA	100267700	100261444	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548
ENSMUSG00000001552.15_100261445_100267968_1	chr11	-	1730	6	ISM	ENSMUSG00000001552.15	ENSMUST00000001592.15	3205	14	20607	0	-3017	0	3prime_fragment	FALSE	canonical	3	472	junction_4	54.0014814611599	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	6771	False	NA	-17	True	AATAAA	-18	NA	100267968	100261444	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548
ENSMUSG00000001555.11_100312814_100315650_1	chr11	+	1539	5	ISM	ENSMUSG00000001555.11	ENSMUST00000001595.10	2584	10	6291	0	-1050	0	3prime_fragment	FALSE	canonical	3	27	junction_1	4.63680924774785	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCAGAAGTGGACAGA	NA	False	NA	13	True	AATAAA	-14	NA	100312813	100315650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_100312916_100313451_100313645_100313910_100314054_100314261_100314426_100314713
ENSMUSG00000001555.11_100314307_100315658_1	chr11	+	1064	2	ISM	ENSMUSG00000001555.11	ENSMUST00000125616.2	767	3	443	-532	443	8	3prime_fragment	FALSE	canonical	3	28	junction_1	0	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTGGACAGATGTCTGGT	NA	False	NA	21	True	AATAAA	-22	NA	100314306	100315658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_100314426_100314713
ENSMUSG00000001558.6_100331954_100347848_1	chr11	+	1307	4	NNC	ENSMUSG00000001558.6	novel	2017	5	NA	NA	-789	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	6.59966329107444	196	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAAGAGTACTGGAAAATG	NA	False	NA	NA	False	AATAAA	-16	NA	100331953	100347848	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_100332042_100337946_100338565_100347109_100347260_100347397
ENSMUSG00000001558.6_100338228_100347848_1	chr11	+	938	3	ISM	ENSMUSG00000001558.6	ENSMUST00000001599.4	2017	5	5485	0	5475	0	3prime_fragment	FALSE	canonical	3	30	junction_1	0	145	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAAGAGTACTGGAAAATG	3817	False	NA	NA	False	AATAAA	-16	NA	100338227	100347848	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_100338565_100347109_100347260_100347397
ENSMUSG00000001576.16_26780519_26874326_1	chr17	+	1119	10	FSM	ENSMUSG00000001576.16	ENSMUST00000167662.8	2754	10	56	1579	0	0	multi-exon	FALSE	canonical	3	380	junction_9	34.0783411176855	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACGTGTCTCTTTCCCTG	NA	False	NA	14	True	GATAAA	-16	NA	26780518	26874326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26874040
ENSMUSG00000001576.16_26780519_26874326_2	chr17	+	1258	11	NNC	ENSMUSG00000001576.16	novel	2754	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	174.561994718209	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACGTGTCTCTTTCCCTG	NA	False	NA	14	True	GATAAA	-16	NA	26780518	26874326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_26780607_26787638_26787778_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26874040
ENSMUSG00000001604.15_135975263_136002214_1	chr4	+	1249	11	NNC	ENSMUSG00000001604.15	novel	1251	11	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	231.929816970565	1914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGAGCCCTGGATGAGGC	6603	False	NA	20	True	AATAAA	-31	NA	135975262	136002214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_135975429_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992245_135995331_135995475_135998543_135998691_136000954_136001027_136002090
ENSMUSG00000001604.15_135975263_136002214_2	chr4	+	1254	11	NNC	ENSMUSG00000001604.15	novel	1251	11	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	231.929816970565	1951	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGAGCCCTGGATGAGGC	6603	False	NA	20	True	AATAAA	-31	NA	135975262	136002214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_135975429_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992234_135995315_135995475_135998543_135998691_136000954_136001027_136002090
ENSMUSG00000001604.15_135975263_136002214_3	chr4	+	1329	11	NNC	ENSMUSG00000001604.15	novel	1251	11	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	302.350392756484	1859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGAGCCCTGGATGAGGC	6603	False	NA	20	True	AATAAA	-31	NA	135975262	136002214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_135975429_135981056_135981120_135981775_135981954_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992237_135995315_135995475_135998543_135998691_136000954_136001027_136002090
ENSMUSG00000001627.13_40253130_40254424_1	chr12	-	546	3	FSM	ENSMUSG00000001627.13	ENSMUST00000170119.8	574	3	217	-189	217	0	multi-exon	FALSE	canonical	3	660	junction_2	16	348	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTGTGTAGTGAGCAGA	NA	False	NA	-3	True	AATAAA	-21	NA	40254424	40253129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_40253451_40253917_40254014_40254295
ENSMUSG00000001630.14_146626493_146678054_1	chr6	+	2294	14	FSM	ENSMUSG00000001630.14	ENSMUST00000001675.14	4550	14	0	2256	0	0	multi-exon	FALSE	canonical	3	136	junction_10	10.7620855417108	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTGATCAGTCAATGGAC	NA	False	NA	11	True	ATTAAA	-21	NA	146626492	146678054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_146626546_146659958_146660104_146661618_146661671_146667692_146667816_146668235_146668320_146668916_146669041_146669830_146669986_146670331_146670435_146670592_146670655_146673079_146673198_146673595_146673720_146674815_146674912_146676897_146676990_146677091
ENSMUSG00000001666.9_75607064_75609248_1	chr10	-	662	3	NNC	ENSMUSG00000001666.9	novel	649	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	232.5	5389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGACTTCTTTGCTTCTGT	NA	False	NA	-4	True	AATAAA	-21	NA	75609248	75607063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75607341_75608571_75608748_75609039
ENSMUSG00000001674.12_121481564_121495718_1	chr1	-	2251	13	NNC	ENSMUSG00000001674.12	novel	2258	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	225.520308890845	2320	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTATACCTTTCCCT	NA	False	NA	-16	True	CATAAA	-23	NA	121495718	121481563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_121481868_121482944_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121487994_121489009_121489325_121489418_121489520_121489787_121489924_121492221_121492333_121493609_121493898_121495519
ENSMUSG00000001707.9_38829665_38842986_1	chr13	-	1023	4	FSM	ENSMUSG00000001707.9	ENSMUST00000001757.9	2553	4	48	1482	0	-1482	multi-exon	FALSE	canonical	3	1400	junction_3	42.6640624205223	17598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTTGTTATCTTTCC	NA	False	NA	-1	True	AGTAAA	-19	NA	38842986	38829664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_38830287_38838971_38839068_38840015_38840217_38842882
ENSMUSG00000001707.9_38829839_38842986_1	chr13	-	849	4	FSM	ENSMUSG00000001707.9	ENSMUST00000001757.9	2553	4	48	1656	0	-1656	multi-exon	FALSE	canonical	3	1400	junction_3	42.6640624205223	1358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGGCTGTTTACTTTTT	NA	False	NA	NA	False	AAAAAG	-16	NA	38842986	38829838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_38830287_38838971_38839068_38840015_38840217_38842882
ENSMUSG00000001707.9_38830067_38842986_1	chr13	-	621	4	FSM	ENSMUSG00000001707.9	ENSMUST00000001757.9	2553	4	48	1884	0	-1884	multi-exon	FALSE	canonical	3	1400	junction_3	42.6640624205223	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGTTTCTTTGTTAATG	NA	False	NA	NA	False	NA	NA	NA	38842986	38830066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_38830287_38838971_38839068_38840015_38840217_38842882
ENSMUSG00000001755.13_100973444_100977445_1	chr11	+	1377	9	NIC	ENSMUSG00000001755.13	novel	2138	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	48.4418143239908	1048	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3564	False	NA	25	True	ATTAAA	-16	NA	100973443	100977445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_100973517_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
ENSMUSG00000001755.13_100973451_100977445_1	chr11	+	2078	10	FSM	ENSMUSG00000001755.13	ENSMUST00000001806.10	2138	10	60	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	26.2908705931015	1260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3571	False	NA	25	True	ATTAAA	-16	NA	100973450	100977445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_100973517_100973824_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
ENSMUSG00000001774.9_18203421_18225297_1	chr9	+	2348	11	FSM	ENSMUSG00000001774.9	ENSMUST00000001825.9	5789	11	0	3441	0	1988	multi-exon	FALSE	canonical	3	795	junction_1	72.6983493622792	1360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTTCTGTCATGTGTTT	8365	False	NA	12	True	NA	NA	NA	18203420	18225297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216588_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
ENSMUSG00000001774.9_18203596_18225297_1	chr9	+	2173	11	FSM	ENSMUSG00000001774.9	ENSMUST00000001825.9	5789	11	175	3441	0	1988	multi-exon	FALSE	canonical	3	795	junction_1	72.6983493622792	1309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTTCTGTCATGTGTTT	8540	False	NA	12	True	NA	NA	NA	18203595	18225297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216588_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
ENSMUSG00000001774.9_18203596_18225297_2	chr9	+	2168	11	NNC	ENSMUSG00000001774.9	novel	5789	11	NA	NA	0	1988	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	283.304006325361	1270	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTTCTGTCATGTGTTT	8540	False	NA	12	True	NA	NA	NA	18203595	18225297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215583_18215683_18216588_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
ENSMUSG00000001783.4_85774501_85793687_1	chr10	-	2014	12	NNC	ENSMUSG00000001783.4	novel	2009	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	424.81083782536	3885	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTCTCTTCCTGTG	NA	False	NA	-12	True	ATTAAA	-17	NA	85793687	85774500	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787213_85787319_85789300_85789369_85791582_85791662_85793478
ENSMUSG00000001783.4_85774501_85793687_2	chr10	-	2002	12	NNC	ENSMUSG00000001783.4	novel	2009	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	425.612499816441	1665	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTCTCTTCCTGTG	NA	False	NA	-12	True	ATTAAA	-17	NA	85793687	85774500	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_85774977_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
ENSMUSG00000001783.4_85774501_85793687_3	chr10	-	2006	12	NNC	ENSMUSG00000001783.4	novel	2009	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	411.931110344219	2238	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTCTCTTCCTGTG	NA	False	NA	-12	True	ATTAAA	-17	NA	85793687	85774500	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791655_85793474
ENSMUSG00000001785.14_85707748_85724220_1	chr10	+	1779	15	FSM	ENSMUSG00000001785.14	ENSMUST00000001836.11	2572	15	53	740	0	-740	multi-exon	FALSE	canonical	3	284	junction_1	18.5957258639765	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTTAACAGGCCATCTGA	NA	False	NA	12	True	TATAAA	-16	NA	85707747	85724220	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_85707879_85710141_85710201_85710312_85710498_85712161_85712248_85712349_85712447_85714342_85714454_85715125_85715257_85715693_85715756_85717866_85717964_85718734_85718797_85720326_85720439_85721473_85721565_85721660_85721783_85723086_85723193_85723893
ENSMUSG00000001785.14_85707748_85724797_1	chr10	+	2356	15	FSM	ENSMUSG00000001785.14	ENSMUST00000001836.11	2572	15	53	163	0	-163	multi-exon	FALSE	canonical	3	284	junction_1	18.5957258639765	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCTGGACTTAAGAGGT	NA	False	NA	NA	False	AATAAA	-24	NA	85707747	85724797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_85707879_85710141_85710201_85710312_85710498_85712161_85712248_85712349_85712447_85714342_85714454_85715125_85715257_85715693_85715756_85717866_85717964_85718734_85718797_85720326_85720439_85721473_85721565_85721660_85721783_85723086_85723193_85723893
ENSMUSG00000001786.15_85857836_85884193_1	chr10	+	1844	9	FSM	ENSMUSG00000001786.15	ENSMUST00000130320.8	5388	9	0	3544	0	6	multi-exon	TRUE	canonical	3	208	junction_3	24.7878498462452	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGACTTTTTTTAAGGA	NA	False	NA	16	True	AGTAAA	-19	NA	85857835	85884193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_85858009_85860279_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
ENSMUSG00000001786.15_85857836_85884193_2	chr10	+	1692	9	NIC	ENSMUSG00000001786.15	novel	5388	9	NA	NA	0	6	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	77.6434156899347	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGACTTTTTTTAAGGA	NA	False	NA	16	True	AGTAAA	-19	NA	85857835	85884193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_85858009_85860431_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
ENSMUSG00000001786.15_85857883_85884193_1	chr10	+	1797	9	FSM	ENSMUSG00000001786.15	ENSMUST00000130320.8	5388	9	47	3544	0	6	multi-exon	FALSE	canonical	3	208	junction_3	24.7878498462452	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGACTTTTTTTAAGGA	NA	False	NA	16	True	AGTAAA	-19	NA	85857882	85884193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_85858009_85860279_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
ENSMUSG00000001786.15_85857985_85884193_1	chr10	+	1543	9	NIC	ENSMUSG00000001786.15	novel	5388	9	NA	NA	-68	6	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	77.6434156899347	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGACTTTTTTTAAGGA	NA	False	NA	16	True	AGTAAA	-19	NA	85857984	85884193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_85858009_85860431_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
ENSMUSG00000001794.14_29886361_29892531_1	chr7	-	1232	10	NNC	ENSMUSG00000001794.14	novel	1192	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_9	479.120258622219	1249	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGGTTATTTTTTTAAT	NA	False	NA	-2	True	NA	NA	NA	29892531	29886360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29892468
ENSMUSG00000001794.14_29886361_29893206_1	chr7	-	1704	10	FSM	ENSMUSG00000001794.14	ENSMUST00000129761.8	1157	10	0	-547	0	0	multi-exon	FALSE	canonical	3	18	junction_9	497.427331996628	747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGGTTATTTTTTTAAT	NA	False	NA	-2	True	NA	NA	NA	29893206	29886360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29892671
ENSMUSG00000001794.14_29886367_29889824_1	chr7	-	868	4	NNC	ENSMUSG00000001794.14	novel	1600	12	NA	NA	-173	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	734.099145589719	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTAACTTGGTTATTTT	NA	False	NA	-8	True	NA	NA	NA	29889824	29886366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_29886959_29887095_29887155_29889476_29889594_29889724
ENSMUSG00000001794.14_29886415_29892531_1	chr7	-	1303	9	NNC	ENSMUSG00000001794.14	novel	1192	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	77	junction_8	507.690958531861	226	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGGACTCTGAGTGCTGA	NA	False	NA	-28	True	AATAAA	-21	NA	29892531	29886414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29892018_29892291_29892326_29892468
ENSMUSG00000001794.14_29886415_29894483_1	chr7	-	1383	10	NNC	ENSMUSG00000001794.14	novel	1429	11	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	539.637281015432	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGGACTCTGAGTGCTGA	NA	False	NA	-28	True	AATAAA	-21	NA	29894483	29886414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29893277_29893527_29894430
ENSMUSG00000001794.14_29886415_29894483_2	chr7	-	1375	10	NNC	ENSMUSG00000001794.14	novel	1429	11	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	539.637281015432	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGGACTCTGAGTGCTGA	NA	False	NA	-28	True	AATAAA	-21	NA	29894483	29886414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892035_29893302_29893527_29894430
ENSMUSG00000001827.13_101507538_101515892_1	chr7	-	1008	5	NNC	ENSMUSG00000001827.13	novel	1039	5	NA	NA	722	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	138.956827827926	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	5558	False	NA	0	True	AATAAA	-31	NA	101515892	101507537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101515793
ENSMUSG00000001827.13_101507538_101517687_1	chr7	-	992	5	ISM	ENSMUSG00000001827.13	ENSMUST00000106986.9	1286	7	2203	0	187	0	3prime_fragment	FALSE	canonical	3	257	junction_4	35.4788669492136	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	3763	False	NA	0	True	AATAAA	-31	NA	101517687	101507537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604
ENSMUSG00000001827.13_101507538_101517932_1	chr7	-	1237	5	ISM	ENSMUSG00000001827.13	ENSMUST00000106986.9	1286	7	1958	0	-58	0	3prime_fragment	FALSE	canonical	3	257	junction_4	35.4788669492136	1078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	3518	False	NA	0	True	AATAAA	-31	NA	101517932	101507537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604
ENSMUSG00000001827.13_101507538_101518529_1	chr7	-	1145	6	ISM	ENSMUSG00000001827.13	ENSMUST00000106983.8	1307	7	1466	0	0	0	3prime_fragment	FALSE	canonical	3	52	junction_5	108.542341968469	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	2921	False	NA	0	True	AATAAA	-31	NA	101518529	101507537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517675_101518363
ENSMUSG00000001827.13_101507538_101518529_2	chr7	-	1229	6	ISM	ENSMUSG00000001827.13	ENSMUST00000106986.9	1286	7	1361	0	0	0	3prime_fragment	FALSE	canonical	3	40	junction_5	113.141327550988	1066	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	2921	False	NA	0	True	AATAAA	-31	NA	101518529	101507537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517759_101518363
ENSMUSG00000001829.18_101312840_101437021_1	chr7	+	2273	16	FSM	ENSMUSG00000001829.18	ENSMUST00000001884.14	4627	16	0	2354	0	4	multi-exon	FALSE	canonical	3	662	junction_8	67.7342519622745	1012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACCTTGCCCTCATGCCT	NA	False	NA	-18	True	AATAAA	-28	NA	101312839	101437021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101371911_101372041_101400440_101400539_101412787_101412903_101422286_101422365_101423398_101423455_101427778_101427824_101428408_101428571_101434534_101434692_101435306_101435381_101435493_101435614_101435852_101435958_101436711
ENSMUSG00000001829.18_101312964_101401318_1	chr7	+	1258	7	NNC	ENSMUSG00000001829.18	novel	2199	14	NA	NA	0	789	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_6	280.167806858675	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTAGCTGTCATGTTCATT	NA	False	NA	NA	False	NA	NA	NA	101312963	101401318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101371911_101372041_101400440_101400539_101400987
ENSMUSG00000001829.18_101312964_101437021_1	chr7	+	2149	16	FSM	ENSMUSG00000001829.18	ENSMUST00000001884.14	4627	16	124	2354	0	4	multi-exon	FALSE	canonical	3	662	junction_8	67.7342519622745	998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACCTTGCCCTCATGCCT	NA	False	NA	-18	True	AATAAA	-28	NA	101312963	101437021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101371911_101372041_101400440_101400539_101412787_101412903_101422286_101422365_101423398_101423455_101427778_101427824_101428408_101428571_101434534_101434692_101435306_101435381_101435493_101435614_101435852_101435958_101436711
ENSMUSG00000001829.18_101435899_101437021_1	chr7	+	369	2	ISM	ENSMUSG00000001829.18	ENSMUST00000106998.8	2287	17	122987	-4	23086	4	3prime_fragment	FALSE	canonical	3	965	junction_1	0	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACCTTGCCCTCATGCCT	NA	False	NA	-18	True	AATAAA	-28	NA	101435898	101437021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_101435958_101436711
ENSMUSG00000001833.18_25163747_25219862_1	chr9	+	2511	13	NIC	ENSMUSG00000001833.18	novel	2516	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	380.283474310064	3200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCAGTGTCTTGTAT	NA	False	NA	17	True	AATAAA	-17	NA	25163746	25219862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_25163996_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
ENSMUSG00000001833.18_25163944_25219202_1	chr9	+	1654	13	NIC	ENSMUSG00000001833.18	novel	2533	14	NA	NA	0	387	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	380.283474310064	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTGAGGATAAATTGCC	NA	False	NA	NA	False	AATAAA	-17	NA	25163943	25219202	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_25163996_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
ENSMUSG00000001833.18_25163944_25219862_1	chr9	+	2314	13	NIC	ENSMUSG00000001833.18	novel	2516	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	380.283474310064	3149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCAGTGTCTTGTAT	NA	False	NA	17	True	AATAAA	-17	NA	25163943	25219862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_25163996_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
ENSMUSG00000001844.11_143302245_143314978_1	chr5	-	1421	9	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_5	104.937406938613	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTTTTCTCATCATT	5302	False	NA	-14	True	AATACA	-25	NA	143314978	143302244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311087_143311179_143311853_143311979_143314145_143314326_143314920
ENSMUSG00000001844.11_143302245_143314978_2	chr5	-	1617	9	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_8	100.752171192486	814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTTTTCTCATCATT	5302	False	NA	-14	True	AATACA	-25	NA	143314978	143302244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314432_143314653_143314853
ENSMUSG00000001844.11_143302245_143314978_3	chr5	-	1274	8	NNC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_6	87.5293536769354	247	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTTTTCTCATCATT	5302	False	NA	-14	True	AATACA	-25	NA	143314978	143302244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314201_143314326_143314920
ENSMUSG00000001844.11_143302245_143314978_4	chr5	-	1412	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	5	junction_6	91.0541440180355	598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTTTTCTCATCATT	5302	False	NA	-14	True	AATACA	-25	NA	143314978	143302244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143312061_143314145_143314326_143314920
ENSMUSG00000001844.11_143302245_143314978_5	chr5	-	1397	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_7	84.1580146425249	1306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTTTTCTCATCATT	5302	False	NA	-14	True	AATACA	-25	NA	143314978	143302244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314853
ENSMUSG00000001844.11_143302245_143314978_6	chr5	-	1418	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_4	86.0744812736656	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTTTTCTCATCATT	5302	False	NA	-14	True	AATACA	-25	NA	143314978	143302244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310154_143310639_143310714_143311853_143311979_143314145_143314326_143314920
ENSMUSG00000001847.15_143492514_143513538_1	chr5	-	781	6	FSM	ENSMUSG00000001847.15	ENSMUST00000080537.14	4159	6	253	3125	210	301	multi-exon	FALSE	canonical	3	1143	junction_4	56.2444663944819	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCTTAAAGCCTTATTT	3676	False	NA	3	True	ATTAAA	-22	NA	143513538	143492513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_143492861_143493081_143493242_143493850_143493914_143500423_143500542_143502912_143502985_143513517
ENSMUSG00000001855.16_31864498_31870797_1	chr2	+	946	5	ISM	ENSMUSG00000001855.16	ENSMUST00000065398.13	6605	36	50	71586	0	829	5prime_fragment	FALSE	canonical	3	103	junction_4	15.9608896995124	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCATACTGAGTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	31864497	31870797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701_31869901_31870521
ENSMUSG00000001855.16_31864498_31873238_1	chr2	+	909	7	ISM	ENSMUSG00000001855.16	ENSMUST00000065398.13	6605	36	50	69145	0	3270	5prime_fragment	FALSE	canonical	3	103	junction_4	13.4039795085887	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGCATGTGAAAGATTAT	NA	False	NA	9	True	NA	NA	NA	31864497	31873238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701_31869901_31870521_31870593_31872622_31872687_31873134
ENSMUSG00000001864.14_31840286_31861849_1	chr2	+	1377	6	FSM	ENSMUSG00000001864.14	ENSMUST00000001920.13	3117	6	135	1605	0	499	multi-exon	FALSE	canonical	3	20	junction_2	6.46838465151849	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTGTCTCCATGTGTG	NA	False	NA	12	True	NA	NA	NA	31840285	31861849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_31840394_31840540_31840603_31852226_31852294_31855082_31855125_31859641_31859805_31860914
ENSMUSG00000001891.17_21271138_21321219_1	chr11	-	2597	10	FSM	ENSMUSG00000001891.17	ENSMUST00000060895.6	2044	10	-18	-535	-18	0	multi-exon	TRUE	canonical	3	305	junction_7	61.1714853284106	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTTTAAGTCTGTTT	NA	False	NA	NA	False	AATATA	-18	NA	21321219	21271137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21303348_21303457_21304278_21304407_21321014
ENSMUSG00000001891.17_21271940_21321219_1	chr11	-	1795	10	FSM	ENSMUSG00000001891.17	ENSMUST00000060895.6	2044	10	-18	267	-18	0	multi-exon	FALSE	canonical	3	305	junction_7	61.1714853284106	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGGTACTTTATTTACT	NA	False	NA	-41	True	AATAAA	-23	NA	21321219	21271939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21303348_21303457_21304278_21304407_21321014
ENSMUSG00000001909.17_85415915_85426415_1	chr8	+	2125	17	FSM	ENSMUSG00000001909.17	ENSMUST00000001974.11	2567	17	420	22	0	0	multi-exon	FALSE	canonical	3	179	junction_1	103.16006979447	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415914	85426415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85416006_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUSG00000001909.17_85415915_85426415_2	chr8	+	2049	17	NIC	ENSMUSG00000001909.17	novel	2044	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	113.375964714749	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415914	85426415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_85416006_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUSG00000001909.17_85415915_85426415_3	chr8	+	2092	17	NNC	ENSMUSG00000001909.17	novel	2138	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	166.407209504276	313	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415914	85426415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_85415979_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425027_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUSG00000001909.17_85415915_85426415_4	chr8	+	2363	16	NIC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	0	0	intron_retention	FALSE	canonical	3	179	junction_1	102.688395968905	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415914	85426415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_85416006_85416260_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUSG00000001909.17_85416093_85426415_1	chr8	+	2202	16	ISM	ENSMUSG00000001909.17	ENSMUST00000109768.9	2044	17	200	0	0	0	3prime_fragment	FALSE	canonical	3	403	junction_2	59.8663697097312	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85416092	85426415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUSG00000001918.18_16515293_16521093_1	chr7	+	1494	4	FSM	ENSMUSG00000001918.18	ENSMUST00000206444.2	475	4	-1030	11	0	0	multi-exon	FALSE	canonical	3	1525	junction_3	60.7124369466422	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGCACATTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16515292	16521093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795
ENSMUSG00000001918.18_16516323_16532199_1	chr7	+	1706	9	FSM	ENSMUSG00000001918.18	ENSMUST00000108496.9	2764	9	1058	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_5	112.684293492927	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16516322	16532199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
ENSMUSG00000001918.18_16518818_16532199_1	chr7	+	1763	9	NNC	ENSMUSG00000001918.18	novel	853	3	NA	NA	155	0	at_least_one_novel_splicesite	FALSE	canonical	2	41	junction_1	534.082800228579	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16518817	16532199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_16518953_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
ENSMUSG00000001918.18_16518818_16532199_2	chr7	+	1806	9	NNC	ENSMUSG00000001918.18	novel	853	3	NA	NA	155	0	at_least_one_novel_splicesite	FALSE	canonical	1	18	junction_1	541.52318452214	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16518817	16532199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_16518996_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
ENSMUSG00000001924.16_20524660_20548943_1	chrX	+	3474	26	FSM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	95	475	0	-475	multi-exon	TRUE	canonical	3	1167	junction_1	494.469940036804	916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	46	True	AATAAA	-15	NA	20524659	20548943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
ENSMUSG00000001924.16_20529137_20548943_1	chrX	+	3596	26	FSM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	0	475	0	-475	multi-exon	FALSE	canonical	3	2172	junction_1	357.223416925598	1012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	46	True	AATAAA	-15	NA	20529136	20548943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
ENSMUSG00000001924.16_20529137_20548943_2	chrX	+	777	5	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	0	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1664.0379352647	250	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	46	True	AATAAA	-15	NA	20529136	20548943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_20529200_20547569_20547754_20548141_20548244_20548347_20548449_20548616
ENSMUSG00000001924.16_20544437_20548943_1	chrX	+	1431	10	ISM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	15300	475	121	-475	3prime_fragment	FALSE	canonical	3	3123	junction_5	304.047551511679	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	46	True	AATAAA	-15	NA	20544436	20548943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
ENSMUSG00000001930.18_125565530_125569137_1	chr6	+	843	4	ISM	ENSMUSG00000001930.18	ENSMUST00000112253.6	2184	10	35604	297	-14983	0	3prime_fragment	FALSE	canonical	3	17	junction_3	6.84754619472471	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCGGGAAGCCCTTATTG	NA	False	NA	NA	False	NA	NA	NA	125565529	125569137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_125565597_125567141_125567265_125568112_125568225_125568596
ENSMUSG00000001942.9_37560478_37568533_1	chr9	+	1490	9	NIC	ENSMUSG00000001942.9	novel	4947	10	NA	NA	6502	7582	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	7537	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAGACCCGCCGGAAGT	4779	False	NA	NA	False	NA	NA	NA	37560477	37568533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37564058_37564328_37564466_37565511_37565733_37566317_37566389_37568293
ENSMUSG00000001962.9_73356639_73363740_1	chrX	+	1362	13	NNC	ENSMUSG00000001962.9	novel	1383	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	238.861187024319	2050	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGTGCCTGCATTATA	199	False	NA	NA	False	AATAAA	-18	NA	73356638	73363740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035_73361113_73361242_73361310_73361753_73361810_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
ENSMUSG00000001962.9_73356639_73363740_2	chrX	+	1306	12	NIC	ENSMUSG00000001962.9	novel	1383	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_6	247.016043243824	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGTGCCTGCATTATA	199	False	NA	NA	False	AATAAA	-18	NA	73356638	73363740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035_73361113_73361242_73361310_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
ENSMUSG00000001962.9_73356639_73363740_3	chrX	+	1360	13	NNC	ENSMUSG00000001962.9	novel	1383	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	317.883397123327	1210	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGTGCCTGCATTATA	199	False	NA	NA	False	AATAAA	-18	NA	73356638	73363740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035_73361113_73361248_73361314_73361753_73361810_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
ENSMUSG00000001962.9_73356639_73363740_4	chrX	+	1362	13	NNC	ENSMUSG00000001962.9	novel	1383	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	239.093891366737	2952	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGTGCCTGCATTATA	199	False	NA	NA	False	AATAAA	-18	NA	73356638	73363740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035_73361113_73361248_73361310_73361747_73361810_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
ENSMUSG00000001962.9_73356639_73363740_5	chrX	+	1283	12	NIC	ENSMUSG00000001962.9	novel	1383	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	47	junction_1	236.531898151127	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGTGCCTGCATTATA	199	False	NA	NA	False	AATAAA	-18	NA	73356638	73363740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_73356932_73358469_73358570_73359032_73359179_73361035_73361113_73361242_73361310_73361747_73361810_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
ENSMUSG00000001962.9_73356639_73363740_6	chrX	+	1361	13	NNC	ENSMUSG00000001962.9	novel	1383	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	233.424193618971	1857	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGTGCCTGCATTATA	199	False	NA	NA	False	AATAAA	-18	NA	73356638	73363740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035_73361113_73361242_73361310_73361747_73361810_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363102_73363565
ENSMUSG00000001962.9_73356639_73363740_7	chrX	+	1360	13	NNC	ENSMUSG00000001962.9	novel	1383	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	236.884802640909	1321	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGTGCCTGCATTATA	199	False	NA	NA	False	AATAAA	-18	NA	73356638	73363740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035_73361113_73361242_73361310_73361747_73361810_73361973_73362051_73362420_73362476_73362663_73362705_73362796_73362868_73362997_73363109_73363565
ENSMUSG00000001962.9_73356732_73363740_1	chrX	+	1267	13	NNC	ENSMUSG00000001962.9	novel	1383	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	237.306178221769	502	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGTGCCTGCATTATA	292	False	NA	NA	False	AATAAA	-18	NA	73356731	73363740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_73356932_73358282_73358368_73358469_73358570_73359040_73359179_73361035_73361113_73361242_73361310_73361747_73361810_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
ENSMUSG00000001964.15_73298436_73301353_1	chrX	+	1312	6	FSM	ENSMUSG00000001964.15	ENSMUST00000002029.13	1595	6	143	140	0	-140	multi-exon	FALSE	canonical	3	248	junction_2	18.1592951405059	2350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTTGATTCTTCCTACT	NA	False	NA	20	True	AATAAA	-15	NA	73298435	73301353	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73300612
ENSMUSG00000001999.16_126912613_126932693_1	chr2	+	1029	6	NNC	ENSMUSG00000001999.16	novel	657	6	NA	NA	0	424	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	79.0103790650317	143	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGAGTCGATTTTGAT	2237	False	NA	NA	False	NA	NA	NA	126912612	126932693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_126912646_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126932163
ENSMUSG00000001999.16_126912613_126939004_1	chr2	+	1129	8	NNC	ENSMUSG00000001999.16	novel	1160	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	61.7962418776747	568	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGAATAGTGTTGATGACT	2237	False	NA	NA	False	AATAAA	-20	NA	126912612	126939004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_126912646_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126933958_126934067_126937005_126937178_126938654
ENSMUSG00000002010.18_72822569_72830228_1	chrX	-	1291	12	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	210	junction_11	355.941284971423	1068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830228	72822568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830133
ENSMUSG00000002010.18_72822569_72830503_1	chrX	-	1313	12	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	73	junction_7	388.708223021623	2077	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824631_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830380
ENSMUSG00000002010.18_72822569_72830503_10	chrX	-	1318	12	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	409.290355421823	4529	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826281_72826323_72830380
ENSMUSG00000002010.18_72822569_72830503_11	chrX	-	1312	12	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	412.124890803546	1792	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824307_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830380
ENSMUSG00000002010.18_72822569_72830503_2	chrX	-	1307	12	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	411.114248865002	3150	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823594_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830380
ENSMUSG00000002010.18_72822569_72830503_3	chrX	-	1308	12	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	411.9644331916	2400	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830391
ENSMUSG00000002010.18_72822569_72830503_4	chrX	-	1295	11	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	429.191286025241	700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72830362
ENSMUSG00000002010.18_72822569_72830503_5	chrX	-	1317	12	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	411.9644331916	4885	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830382
ENSMUSG00000002010.18_72822569_72830503_6	chrX	-	1509	11	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	1072	junction_9	145.935054048025	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830380
ENSMUSG00000002010.18_72822569_72830503_7	chrX	-	1587	11	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	1072	junction_9	151.405416019375	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_72822778_72823071_72823133_72823219_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830380
ENSMUSG00000002010.18_72822569_72830503_8	chrX	-	2348	9	NIC	ENSMUSG00000002010.18	novel	2080	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	1120	junction_6	124.053415914275	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_72822778_72823071_72823133_72823219_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72826323_72830380
ENSMUSG00000002010.18_72822569_72830503_9	chrX	-	1313	12	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	406.258375628854	2224	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72822778_72823077_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830380
ENSMUSG00000002012.14_72699601_72703723_1	chrX	-	1479	12	NNC	ENSMUSG00000002012.14	novel	1532	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	20.4110648974504	167	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTCTGGTGCTGAACTGG	NA	False	NA	-3	True	AATAAA	-14	NA	72703723	72699600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72699940_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703624
ENSMUSG00000002014.13_72830375_72834432_1	chrX	+	618	6	NNC	ENSMUSG00000002014.13	novel	2119	5	NA	NA	-259	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	605.698406799952	722	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5173	False	NA	48	True	AATAAA	-30	NA	72830374	72834432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_72830470_72832440_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
ENSMUSG00000002014.13_72830634_72834432_1	chrX	+	901	7	NNC	ENSMUSG00000002014.13	novel	800	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_2	575.300621897418	10883	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5432	False	NA	48	True	AATAAA	-30	NA	72830633	72834432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_72830913_72832440_72832560_72832660_72832760_72833405_72833481_72833636_72833727_72833964_72834031_72834259
ENSMUSG00000002014.13_72830830_72834432_1	chrX	+	603	6	FSM	ENSMUSG00000002014.13	ENSMUST00000002090.3	765	6	162	0	0	0	multi-exon	FALSE	canonical	3	426	junction_1	441.755135793575	4111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5628	False	NA	48	True	AATAAA	-30	NA	72830829	72834432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_72830913_72832443_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
ENSMUSG00000002015.6_72729784_72759781_1	chrX	-	1211	8	NNC	ENSMUSG00000002015.6	novel	1219	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	17	junction_7	1016.69701304102	13076	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTTGTGTCTAACTGAG	NA	False	NA	-13	True	AATAAA	-17	NA	72759781	72729783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72730202_72731442_72731544_72732265_72732387_72733152_72733289_72750602_72750751_72756050_72756152_72758398_72758527_72759723
ENSMUSG00000002015.6_72729784_72759781_2	chrX	-	1211	8	NNC	ENSMUSG00000002015.6	novel	1219	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1020.94741914217	13054	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTTGTGTCTAACTGAG	NA	False	NA	-13	True	AATAAA	-17	NA	72759781	72729783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72730202_72731442_72731536_72732265_72732387_72733152_72733289_72750602_72750751_72756050_72756152_72758398_72758535_72759723
ENSMUSG00000002015.6_72729989_72759781_1	chrX	-	1014	8	FSM	ENSMUSG00000002015.6	ENSMUST00000002091.6	1219	8	0	205	0	-205	multi-exon	FALSE	canonical	3	2403	junction_7	231.225131040053	1563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACCTGATTGTTGTTTAT	NA	False	NA	-3	True	NA	NA	NA	72759781	72729988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72730202_72731442_72731544_72732265_72732387_72733152_72733289_72750602_72750751_72756050_72756152_72758398_72758535_72759723
ENSMUSG00000002017.11_75844090_75845633_1	chr17	-	1225	2	NNC	ENSMUSG00000002017.11	novel	2809	7	NA	NA	1934	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCCTTGCTCTGGGAGT	NA	False	NA	-10	True	AATAAA	-13	NA	75845633	75844089	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_75845304_75845622
ENSMUSG00000002031.14_44684348_44702190_1	chr9	+	1474	12	FSM	ENSMUSG00000002031.14	ENSMUST00000238800.2	1059	12	-102	-313	0	2	multi-exon	FALSE	canonical	3	173	junction_2	11.1058022211458	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTCTGGCTCATTAGTG	NA	False	NA	8	True	AATACA	-17	NA	44684347	44702190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44684471_44684984_44685082_44689858_44689936_44693396_44693531_44695027_44695103_44695256_44695351_44695628_44695758_44697590_44697713_44698134_44698202_44700863_44700925_44701187_44701274_44701781
ENSMUSG00000002031.14_44684450_44702190_1	chr9	+	1372	12	FSM	ENSMUSG00000002031.14	ENSMUST00000238800.2	1059	12	0	-313	0	2	multi-exon	FALSE	canonical	3	173	junction_2	11.1058022211458	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTCTGGCTCATTAGTG	NA	False	NA	8	True	AATACA	-17	NA	44684449	44702190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44684471_44684984_44685082_44689858_44689936_44693396_44693531_44695027_44695103_44695256_44695351_44695628_44695758_44697590_44697713_44698134_44698202_44700863_44700925_44701187_44701274_44701781
ENSMUSG00000002043.18_19242655_19250070_1	chr7	+	749	6	NIC	ENSMUSG00000002043.18	novel	785	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_3	193.692126840509	4375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	525	False	NA	21	True	AGTAAA	-22	NA	19242654	19250070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_19242758_19248125_19248194_19248346_19248465_19248949_19249016_19249128_19249223_19249770
ENSMUSG00000002043.18_19242655_19250070_2	chr7	+	761	6	NNC	ENSMUSG00000002043.18	novel	785	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	217.312677955061	5535	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	525	False	NA	21	True	AGTAAA	-22	NA	19242654	19250070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_19242758_19248131_19248194_19248346_19248465_19248931_19249016_19249128_19249223_19249770
ENSMUSG00000002043.18_19242655_19250070_3	chr7	+	1234	5	NIC	ENSMUSG00000002043.18	novel	785	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	436	junction_1	68.656299783778	906	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	525	False	NA	21	True	AGTAAA	-22	NA	19242654	19250070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_19242758_19248125_19248194_19248346_19249016_19249128_19249223_19249770
ENSMUSG00000002043.18_19242655_19250070_4	chr7	+	615	4	NIC	ENSMUSG00000002043.18	novel	719	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	250.493291105548	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	525	False	NA	21	True	AGTAAA	-22	NA	19242654	19250070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_19242758_19248346_19248465_19249128_19249223_19249770
ENSMUSG00000002055.10_78212135_78213283_1	chr11	+	595	4	ISM	ENSMUSG00000002055.10	ENSMUST00000045026.4	3887	24	19780	0	1383	0	3prime_fragment	FALSE	canonical	3	176	junction_1	25.2498624858742	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCAGTCCACTGAATCTT	NA	False	NA	8	True	AATAAA	-18	NA	78212134	78213283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_78212244_78212323_78212399_78212511_78212593_78212953
ENSMUSG00000002058.14_78234332_78239990_1	chr11	+	1091	5	NNC	ENSMUSG00000002058.14	novel	1329	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	102.793482283655	125	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTGTCTATAGGGAA	NA	False	NA	19	True	AATAAA	-26	NA	78234331	78239990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_78234399_78238043_78238158_78238622_78238726_78238912_78239086_78239356
ENSMUSG00000002059.19_78079266_78083014_1	chr11	+	1145	10	FSM	ENSMUSG00000002059.19	ENSMUST00000150941.8	795	10	0	-350	0	0	multi-exon	FALSE	canonical	2	3	junction_1	46.6883547486501	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	6035	False	NA	21	True	ATTAAA	-15	NA	78079265	78083014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78079338_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
ENSMUSG00000002059.19_78079266_78083014_2	chr11	+	1331	11	NNC	ENSMUSG00000002059.19	novel	1368	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	44.3361026703972	1099	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	6035	False	NA	21	True	ATTAAA	-15	NA	78079265	78083014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_78079338_78080030_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
ENSMUSG00000002059.19_78079266_78083014_3	chr11	+	2024	10	FSM	ENSMUSG00000002059.19	ENSMUST00000108322.9	1685	10	-339	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	10.0443461155462	1420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	6035	False	NA	21	True	ATTAAA	-15	NA	78079265	78083014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
ENSMUSG00000002059.19_78082482_78083014_1	chr11	+	442	2	ISM	ENSMUSG00000002059.19	ENSMUST00000156435.2	950	8	1526	5	1303	0	3prime_fragment	FALSE	canonical	3	145	junction_1	0	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	9251	False	NA	21	True	ATTAAA	-15	NA	78082481	78083014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_78082509_78082599
ENSMUSG00000002064.11_78136817_78146322_1	chr11	+	945	4	NNC	ENSMUSG00000002064.11	novel	1268	3	NA	NA	245	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	99.5199589138893	1209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTCATTTATTAAG	NA	False	NA	19	True	NA	NA	NA	78136816	78146322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_78136997_78141841_78142039_78145676_78145738_78145815
ENSMUSG00000002064.11_78136817_78146322_2	chr11	+	1023	3	FSM	ENSMUSG00000002064.11	ENSMUST00000002133.9	1268	3	245	0	245	0	multi-exon	FALSE	canonical	3	217	junction_1	4	2644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTCATTTATTAAG	NA	False	NA	19	True	NA	NA	NA	78136816	78146322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78136997_78141841_78142039_78145676
ENSMUSG00000002064.11_78138903_78146322_1	chr11	+	924	3	NNC	ENSMUSG00000002064.11	novel	586	2	NA	NA	2331	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	104	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTCATTTATTAAG	NA	False	NA	19	True	NA	NA	NA	78138902	78146322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_78138984_78141841_78142039_78145676
ENSMUSG00000002068.17_37797409_37798574_1	chr7	-	812	2	ISM	ENSMUSG00000002068.17	ENSMUST00000108023.10	2000	12	8385	0	220	0	3prime_fragment	FALSE	canonical	3	871	junction_1	0	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTCTTAACTCTGT	NA	False	NA	-12	True	AATAAA	-19	NA	37798574	37797408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_37798063_37798416
ENSMUSG00000002076.13_32164894_32253492_1	chr17	-	1702	9	NNC	ENSMUSG00000002076.13	novel	3115	9	NA	NA	-10	162	at_least_one_novel_splicesite	FALSE	non_canonical	3	53	junction_1	394.529129944799	5321	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATCTGCCTGCACTCATG	NA	False	NA	-17	True	ATTAAA	-17	NA	32253492	32164893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_32164934_32164957_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
ENSMUSG00000002076.13_32165056_32253492_1	chr17	-	1414	7	NIC	ENSMUSG00000002076.13	novel	3115	9	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	3	97	junction_4	419.803393136464	650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTTTAGGAAGTGGT	NA	False	NA	-13	True	AATAAA	-30	NA	32253492	32165055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32241739_32241844_32252234_32252386_32253418
ENSMUSG00000002076.13_32165056_32253492_2	chr17	-	1564	8	FSM	ENSMUSG00000002076.13	ENSMUST00000002145.12	2867	8	-10	1313	-10	0	multi-exon	FALSE	canonical	3	776	junction_1	207.062940248828	5017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTTTAGGAAGTGGT	NA	False	NA	-13	True	AATAAA	-30	NA	32253492	32165055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
ENSMUSG00000002083.14_16047585_16052130_1	chr7	+	1246	2	FSM	ENSMUSG00000002083.14	ENSMUST00000147267.2	881	2	143	-508	143	0	multi-exon	FALSE	canonical	3	237	junction_1	0	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTTTTTGTTAGCTTTA	975	False	NA	26	True	AATAAA	-19	NA	16047584	16052130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_16047743_16051042
ENSMUSG00000002102.16_90884646_90889783_1	chr2	+	1350	12	FSM	ENSMUSG00000002102.16	ENSMUST00000067663.14	1636	12	292	-6	0	4	multi-exon	FALSE	canonical	3	1724	junction_1	113.356309451931	4817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTCTCAGCCTCTGTGG	NA	False	NA	24	True	AATAAA	-25	NA	90884645	90889783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
ENSMUSG00000002104.12_90875268_90876074_1	chr2	+	401	2	ISM	ENSMUSG00000002104.12	ENSMUST00000128008.2	686	5	2138	-249	2138	0	3prime_fragment	FALSE	canonical	3	71	junction_1	0	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAGTGATTCTGACCCTT	NA	False	NA	7	True	AATAAA	-15	NA	90875267	90876074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_90875385_90875790
ENSMUSG00000002109.15_91041917_91067305_1	chr2	-	1819	10	FSM	ENSMUSG00000002109.15	ENSMUST00000028696.5	1557	10	22	-284	0	0	multi-exon	FALSE	canonical	3	56	junction_8	17.7888854188351	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAACAGGGTTTCTGAGT	3019	False	NA	-26	True	AATAAA	-35	NA	91067305	91041916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91064645_91065159_91065297_91067034
ENSMUSG00000002111.9_90936111_90946101_1	chr2	+	1157	4	NNC	ENSMUSG00000002111.9	novel	544	4	NA	NA	8986	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	12.9614813968157	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAGTGTCTCATTCAAG	NA	False	NA	21	True	AGTAAA	-22	NA	90936110	90946101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_90936229_90943599_90943791_90944589_90944756_90945419
ENSMUSG00000002147.19_127493853_127496830_1	chr10	+	1816	6	ISM	ENSMUSG00000002147.19	ENSMUST00000092074.12	3775	22	14998	-4	1223	4	3prime_fragment	FALSE	canonical	3	57	junction_1	71.0070419043069	1680	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCTACTGTACACAATCT	658	False	NA	-2	True	AATAAA	-26	NA	127493852	127496830	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_127494130_127494225_127494331_127494497_127494570_127495301_127495368_127495457_127495587_127495663
ENSMUSG00000002147.19_127493955_127496830_1	chr10	+	1714	6	ISM	ENSMUSG00000002147.19	ENSMUST00000092074.12	3775	22	15100	-4	-1314	4	3prime_fragment	FALSE	canonical	3	57	junction_1	71.0070419043069	1689	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCTACTGTACACAATCT	760	False	NA	-2	True	AATAAA	-26	NA	127493954	127496830	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_127494130_127494225_127494331_127494497_127494570_127495301_127495368_127495457_127495587_127495663
ENSMUSG00000002147.19_127493959_127496830_1	chr10	+	1605	5	NIC	ENSMUSG00000002147.19	novel	3775	22	NA	NA	-1310	4	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	101.635070226768	174	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCTACTGTACACAATCT	764	False	NA	-2	True	AATAAA	-26	NA	127493958	127496830	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_127494130_127494497_127494570_127495301_127495368_127495457_127495587_127495663
ENSMUSG00000002147.19_127494041_127496855_1	chr10	+	1653	6	ISM	ENSMUSG00000002147.19	ENSMUST00000092074.12	3775	22	15186	-29	-1228	29	3prime_fragment	FALSE	canonical	3	57	junction_1	71.0070419043069	1680	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGACACGCTAAGTGTTC	846	False	NA	23	True	AATAAA	-26	NA	127494040	127496855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_127494130_127494225_127494331_127494497_127494570_127495301_127495368_127495457_127495587_127495663
ENSMUSG00000002147.19_127494247_127496056_1	chr10	+	744	5	ISM	ENSMUSG00000002147.19	ENSMUST00000092074.12	3775	22	15392	770	-1022	0	3prime_fragment	FALSE	canonical	3	216	junction_3	13.3229125944742	243	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGTGGGGTGTTAATGCT	1052	False	NA	NA	False	NA	NA	NA	127494246	127496056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_127494331_127494497_127494570_127495301_127495368_127495457_127495587_127495663
ENSMUSG00000002147.19_127494247_127496830_1	chr10	+	1472	5	NNC	ENSMUSG00000002147.19	novel	3775	22	NA	NA	-1022	4	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_4	96.8203878323156	119	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCTACTGTACACAATCT	1052	False	NA	-2	True	AATAAA	-26	NA	127494246	127496830	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_127494331_127494497_127494570_127495301_127495368_127495457_127495587_127495709
ENSMUSG00000002147.19_127494247_127496830_2	chr10	+	1595	4	ISM	ENSMUSG00000002147.19	ENSMUST00000092074.12	3775	22	15392	-4	-1022	4	intron_retention	FALSE	canonical	3	216	junction_3	14.6590889515307	107	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCTACTGTACACAATCT	1052	False	NA	-2	True	AATAAA	-26	NA	127494246	127496830	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_127494331_127494497_127494570_127495301_127495368_127495457
ENSMUSG00000002147.19_127494247_127496830_3	chr10	+	1518	5	ISM	ENSMUSG00000002147.19	ENSMUST00000092074.12	3775	22	15392	-4	-1022	4	3prime_fragment	FALSE	canonical	3	216	junction_3	13.3229125944742	1469	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCTACTGTACACAATCT	1052	False	NA	-2	True	AATAAA	-26	NA	127494246	127496830	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_127494331_127494497_127494570_127495301_127495368_127495457_127495587_127495663
ENSMUSG00000002190.14_84116496_84126719_1	chr8	+	662	5	ISM	ENSMUSG00000002190.14	ENSMUST00000109831.3	2293	15	-11	26741	0	-26741	5prime_fragment	FALSE	canonical	3	25	junction_2	6.59545297913646	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTTTAAGACTTTCTC	NA	False	NA	NA	False	GATAAA	-15	NA	84116495	84126719	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_84116730_84122071_84122222_84123630_84123708_84124277_84124337_84126577
ENSMUSG00000002204.10_44222023_44236295_1	chr7	+	1350	9	FSM	ENSMUSG00000002204.10	ENSMUST00000002274.10	1560	9	219	-9	167	9	multi-exon	FALSE	canonical	1	2	junction_5	2.82842712474619	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAGGATATACCATTT	2761	False	NA	NA	False	ATTAAA	-27	NA	44222022	44236295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44222114_44230627_44230764_44230844_44230969_44231106_44231226_44231765_44231966_44234422_44234546_44234642_44234788_44235137_44235237_44235982
ENSMUSG00000002205.17_44398060_44426939_1	chr7	+	1746	15	FSM	ENSMUSG00000002205.17	ENSMUST00000002275.15	1969	15	223	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	19.1081775420785	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGAGAGTTCAGTGTTC	NA	False	NA	16	True	AATAAA	-16	NA	44398059	44426939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44398076_44401538_44401601_44403239_44403380_44407169_44407320_44409123_44409319_44410301_44410367_44412414_44412482_44413548_44413634_44414206_44414313_44416545_44416639_44417866_44418000_44418956_44419078_44420287_44420347_44424799_44424960_44426645
ENSMUSG00000002210.12_24099044_24122203_1	chr7	+	2233	14	NNC	ENSMUSG00000002210.12	novel	2242	14	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	30	junction_3	34.9034170348701	259	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGGTTTGTTCTTTCTC	NA	False	NA	19	True	AATAAA	-19	NA	24099043	24122203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_24099317_24102816_24102973_24104951_24105027_24105121_24105378_24105459_24105558_24106945_24107059_24114363_24114476_24115923_24116020_24116345_24116432_24119438_24119546_24120000_24120109_24120237_24120367_24120544_24120690_24121724
ENSMUSG00000002227.16_104702152_104703267_1	chr3	-	708	4	ISM	ENSMUSG00000002227.16	ENSMUST00000002297.12	3498	20	22291	0	21403	0	3prime_fragment	FALSE	canonical	3	1316	junction_2	22.0957512255687	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	-25	True	AAGAAA	-21	NA	104703267	104702151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175
ENSMUSG00000002227.16_104702152_104725575_1	chr3	-	3515	20	ISM	ENSMUSG00000002227.16	ENSMUST00000168015.8	3460	21	46	0	-17	0	intron_retention	FALSE	canonical	3	1102	junction_11	86.7727314610285	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	-25	True	AAGAAA	-21	NA	104725575	104702151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251
ENSMUSG00000002228.8_104688372_104693334_1	chr3	+	1670	10	NNC	ENSMUSG00000002228.8	novel	1721	10	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	23	junction_8	22.6949714341098	165	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTGTGTCATTATTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	104688371	104693334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_104688726_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692559_104692713_104692866_104693017
ENSMUSG00000002233.14_104696350_104701775_1	chr3	+	1160	6	NNC	ENSMUSG00000002233.14	novel	1202	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	108.939249125373	1018	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCAGCTTCCTGTCTTT	NA	False	NA	13	True	AATAAA	-20	NA	104696349	104701775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_104696400_104698799_104698904_104699204_104699369_104699880_104700002_104700215_104700347_104701185
ENSMUSG00000002233.14_104696350_104701775_2	chr3	+	1074	5	FSM	ENSMUSG00000002233.14	ENSMUST00000106787.8	959	5	0	-115	0	0	multi-exon	FALSE	canonical	2	16	junction_1	97.4586450757448	2416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCAGCTTCCTGTCTTT	NA	False	NA	13	True	AATAAA	-20	NA	104696349	104701775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_104696418_104699204_104699369_104699880_104700002_104700215_104700347_104701185
ENSMUSG00000002233.14_104696350_104701775_3	chr3	+	1056	5	FSM	ENSMUSG00000002233.14	ENSMUST00000002303.12	1202	5	146	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	22.8965062837106	2744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCAGCTTCCTGTCTTT	NA	False	NA	13	True	AATAAA	-20	NA	104696349	104701775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_104696400_104699204_104699369_104699880_104700002_104700215_104700347_104701185
ENSMUSG00000002279.20_25798173_25881697_1	chr17	+	1726	10	NNC	ENSMUSG00000002279.20	novel	1861	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	39.1949858219166	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTCTCTACCTATACTGT	NA	False	NA	4	True	AATAAA	-15	NA	25798172	25881697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_25798354_25804516_25804831_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
ENSMUSG00000002280.12_25992778_26001770_1	chr17	+	1991	11	FSM	ENSMUSG00000002280.12	ENSMUST00000002350.11	2555	11	28	536	0	0	multi-exon	FALSE	canonical	3	237	junction_8	20.6145579627602	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACTGTGTGTCTGGTACC	6948	False	NA	11	True	AATAAA	-23	NA	25992777	26001770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_25999927_26000214_26000353_26000661_26000820_26000989
ENSMUSG00000002280.12_26001799_26004541_1	chr17	+	1263	9	NIC	ENSMUSG00000002280.12	novel	2555	11	NA	NA	6006	2235	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGGCTGGAACTGCGCATG	NA	False	NA	NA	False	NA	NA	NA	26001798	26004541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977_26004169_26004401
ENSMUSG00000002280.12_26001799_26004541_2	chr17	+	1077	8	NIC	ENSMUSG00000002280.12	novel	2555	11	NA	NA	6006	2235	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGGCTGGAACTGCGCATG	NA	False	NA	NA	False	NA	NA	NA	26001798	26004541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26004396
ENSMUSG00000002280.12_26001799_26004647_1	chr17	+	1369	9	NIC	ENSMUSG00000002280.12	novel	2555	11	NA	NA	6006	2341	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGCCTTTCTGGTTTCCAG	NA	False	NA	NA	False	NA	NA	NA	26001798	26004647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977_26004169_26004401
ENSMUSG00000002289.17_33993882_34000213_1	chr17	-	1555	7	FSM	ENSMUSG00000002289.17	ENSMUST00000173869.8	1859	7	304	0	304	0	multi-exon	FALSE	canonical	1	4	junction_5	47.4812828620102	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACATTTTGTTCTCTG	120	False	NA	-11	True	AATAAA	-8	NA	34000213	33993881	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_33994543_33995923_33996206_33996293_33996390_33997345_33997460_33999503_33999618_33999756_33999868_34000036
ENSMUSG00000002307.17_34131663_34134564_1	chr17	+	1041	4	ISM	ENSMUSG00000002307.17	ENSMUST00000170075.9	2673	8	3088	-8	0	0	3prime_fragment	FALSE	canonical	3	546	junction_1	91.8706820602864	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	8813	False	NA	12	True	AATAAA	-23	NA	34131662	34134564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_34131782_34132246_34132701_34132816_34133037_34134316
ENSMUSG00000002308.17_34062077_34067727_1	chr17	+	1176	5	FSM	ENSMUSG00000002308.17	ENSMUST00000002379.15	2209	5	12	1021	0	0	multi-exon	FALSE	canonical	3	326	junction_3	13.0072095393286	2762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGCCTCTAGCCTGTTT	7005	False	NA	23	True	ATTAAA	-16	NA	34062076	34067727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34062266_34064989_34065116_34066468_34066700_34066990_34067153_34067259
ENSMUSG00000002319.17_55863197_55873091_1	chr14	-	3456	30	FSM	ENSMUSG00000002319.17	ENSMUST00000047131.16	3846	30	50	340	-3	0	multi-exon	FALSE	canonical	0	0	junction_28	76.4571487859417	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAGCTGTGACATCATAC	9795	False	NA	-27	True	AATAAA	-30	NA	55873091	55863196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
ENSMUSG00000002320.16_55873425_55880803_1	chr14	-	2174	6	NNC	ENSMUSG00000002320.16	novel	2148	6	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_5	130.396318966449	111	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCTGTCGTTGGAAGTT	5200	False	NA	48	True	AATAAA	-16	NA	55880803	55873424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880718
ENSMUSG00000002320.16_55878232_55880803_1	chr14	-	1567	2	FSM	ENSMUSG00000002320.16	ENSMUST00000127473.2	2271	2	25	679	-6	-331	multi-exon	FALSE	canonical	3	368	junction_1	0	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCAGTGGATTTCCTCTTG	5200	False	NA	NA	False	NA	NA	NA	55880803	55878231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55879046_55880050
ENSMUSG00000002324.9_55855646_55862852_1	chr14	+	2032	20	FSM	ENSMUSG00000002324.9	ENSMUST00000002395.8	2184	20	152	0	152	0	multi-exon	FALSE	canonical	3	23	junction_6	6.49738920505725	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCCTCTTTTTTTTTTT	1480	False	NA	9	True	ATTAAA	-21	NA	55855645	55862852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55855811_55856002_55856116_55856198_55856268_55856354_55856498_55856577_55856654_55857036_55857158_55858691_55858777_55859671_55859752_55859883_55860020_55860101_55860175_55860250_55860343_55860620_55860671_55860953_55861092_55861377_55861445_55861532_55861700_55861805_55861855_55862179_55862244_55862341_55862459_55862529_55862637_55862732
ENSMUSG00000002325.16_55841645_55842958_1	chr14	+	506	2	ISM	ENSMUSG00000002325.16	ENSMUST00000130697.8	2459	9	203	4529	203	-359	5prime_fragment	FALSE	canonical	3	21	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAGAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	55841644	55842958	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_55841701_55842508
ENSMUSG00000002325.16_55841664_55847487_1	chr14	+	2237	9	FSM	ENSMUSG00000002325.16	ENSMUST00000130697.8	2459	9	222	0	222	0	multi-exon	FALSE	canonical	3	21	junction_1	14.5086181285469	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTCATGTGGTGTCTA	NA	False	NA	9	True	NA	NA	NA	55841663	55847487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55841701_55842508_55842690_55843177_55843362_55843549_55843624_55843774_55843896_55843993_55844066_55844970_55845313_55846141_55846258_55846377
ENSMUSG00000002326.7_55899722_55909581_2	chr14	+	812	4	NNC	ENSMUSG00000002326.7	novel	1658	3	NA	NA	-9676	-1940	intron_retention	FALSE	non_canonical	0	0	junction_1	0	22102	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTGGAGGCAGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	55899721	55909581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55900073_55900871_55900955_55901268_55901317_55909251
ENSMUSG00000002326.7_55899722_55909581_4	chr14	+	807	4	NNC	ENSMUSG00000002326.7	novel	1658	3	NA	NA	-9676	-1940	intron_retention	FALSE	non_canonical	0	0	junction_1	0	18934	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTGGAGGCAGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	55899721	55909581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55900083_55900871_55900940_55901268_55901317_55909251
ENSMUSG00000002326.7_55899722_55909581_6	chr14	+	884	4	NIC	ENSMUSG00000002326.7	novel	1658	3	NA	NA	-9676	-1940	intron_retention	FALSE	non_canonical	0	0	junction_1	0	22871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTGGAGGCAGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	55899721	55909581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_55900083_55900871_55900955_55901268_55901379_55909251
ENSMUSG00000002326.7_55909715_55911521_1	chr14	+	1338	3	FSM	ENSMUSG00000002326.7	ENSMUST00000226735.2	1658	3	317	3	0	0	multi-exon	FALSE	canonical	3	97	junction_1	16.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACCAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATATA	-38	NA	55909714	55911521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55909842_55910162_55910259_55910406
ENSMUSG00000002326.7_55909715_55916201_1	chr14	+	1514	10	FSM	ENSMUSG00000002326.7	ENSMUST00000002397.7	1993	10	23	456	0	428	multi-exon	TRUE	canonical	3	97	junction_1	15.6828127988557	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTTAGACGTTCTTCTAT	NA	False	NA	21	True	ATTAAA	-22	NA	55909714	55916201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55909842_55910162_55910259_55910406_55910527_55912783_55912868_55913015_55913190_55914211_55914294_55914384_55914492_55914662_55914706_55915327_55915488_55915680
ENSMUSG00000002326.7_55909715_55916201_2	chr14	+	1622	10	NIC	ENSMUSG00000002326.7	novel	1993	10	NA	NA	0	428	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	39.4658783705058	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTTAGACGTTCTTCTAT	NA	False	NA	21	True	ATTAAA	-22	NA	55909714	55916201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_55909950_55910162_55910259_55910406_55910527_55912783_55912868_55913015_55913190_55914211_55914294_55914384_55914492_55914662_55914706_55915327_55915488_55915680
ENSMUSG00000002326.7_55916559_55919265_1	chr14	+	1862	8	NIC	ENSMUSG00000002326.7	novel	1993	10	NA	NA	2145	2608	intron_retention	FALSE	non_canonical	0	0	junction_1	0	715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACTTCCGCCTGGGCGCG	NA	False	NA	NA	False	ACTAAA	-37	NA	55916558	55919265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_55916867_55916970_55917063_55917322_55917388_55917471_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
ENSMUSG00000002329.8_55896328_55897908_1	chr14	-	753	5	FSM	ENSMUSG00000002329.8	ENSMUST00000226659.2	1730	5	0	977	0	887	multi-exon	FALSE	canonical	3	428	junction_3	25.3673017879316	3407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGGGTTGTTTCCATTTT	2342	False	NA	-16	True	ATTAAA	-34	NA	55897908	55896327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897686_55897794
ENSMUSG00000002329.8_55896328_55897908_2	chr14	-	684	6	FSM	ENSMUSG00000002329.8	ENSMUST00000002400.7	1733	6	57	992	0	887	multi-exon	FALSE	canonical	3	347	junction_4	50.5750926840476	3156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGGGTTGTTTCCATTTT	2342	False	NA	-16	True	ATTAAA	-34	NA	55897908	55896327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897556_55897624_55897686_55897794
ENSMUSG00000002332.17_55976477_55983090_1	chr14	-	1418	9	NNC	ENSMUSG00000002332.17	novel	1477	9	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	53.6456836567491	826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGAGTTCTCATTCTGT	NA	False	NA	0	True	AATAAA	-20	NA	55983090	55976476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_55976878_55977008_55977090_55977392_55977463_55978183_55978331_55978639_55978773_55980910_55980991_55981114_55981253_55982370_55982546_55982897
ENSMUSG00000002345.19_70592149_70598199_1	chr8	+	978	4	FSM	ENSMUSG00000002345.19	ENSMUST00000123976.2	756	4	-208	-14	0	0	multi-exon	FALSE	canonical	3	180	junction_1	5.79271573232759	1294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCCTTTGACCAGTCTG	8613	False	NA	25	True	AATAAA	-25	NA	70592148	70598199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673
ENSMUSG00000002345.19_70592357_70599911_1	chr8	+	850	7	NNC	ENSMUSG00000002345.19	novel	691	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	81.8229796573065	520	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTCTCTTTCCATGCTGGG	8821	False	NA	22	True	AATACA	-16	NA	70592356	70599911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673_70597785_70598460_70598541_70598690_70598934_70599739
ENSMUSG00000002345.19_70592357_70599911_2	chr8	+	607	6	FSM	ENSMUSG00000002345.19	ENSMUST00000002418.15	810	6	208	-5	0	0	multi-exon	FALSE	canonical	3	86	junction_5	44.6183818621877	1039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTCTCTTTCCATGCTGGG	8821	False	NA	22	True	AATACA	-16	NA	70592356	70599911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673_70597785_70598460_70598541_70599739
ENSMUSG00000002345.19_70592363_70598765_1	chr8	+	654	5	ISM	ENSMUSG00000002345.19	ENSMUST00000002418.15	810	6	214	1141	0	566	5prime_fragment	FALSE	canonical	3	111	junction_4	33.5745439283991	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCTGGTCTTCAGCTTT	8827	False	NA	NA	False	NA	NA	NA	70592362	70598765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673_70597785_70598460
ENSMUSG00000002372.10_57016971_57018764_1	chr17	+	1356	3	ISM	ENSMUSG00000002372.10	ENSMUST00000233319.2	2567	17	36606	0	13236	0	3prime_fragment	FALSE	canonical	3	438	junction_1	5.5	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	5194	False	NA	NA	False	ATTAAA	-14	NA	57016970	57018764	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_57017231_57017590_57017778_57017855
ENSMUSG00000002379.8_57024798_57029137_1	chr17	+	467	4	NNC	ENSMUSG00000002379.8	novel	545	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	154	junction_2	1198.36249385012	1656	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATGTCTTAAAGGCAGG	NA	False	NA	18	True	AATAAA	-18	NA	57024797	57029137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_57024943_57028034_57028128_57028365_57028442_57028984
ENSMUSG00000002384.3_123020908_123033744_1	chr4	+	1259	10	Genic_Genomic	ENSMUSG00000002384.3	novel	1326	6	NA	NA	7791	7852	multi-exon	FALSE	non_canonical	0	0	junction_1	0	872	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGAAGCCGGCACTCGGC	4272	False	NA	NA	False	NA	NA	NA	123020907	123033744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030593_123030692_123031318_123031363_123032658_123032758_123033694
ENSMUSG00000002384.3_123020908_123033744_2	chr4	+	1219	10	Genic_Genomic	ENSMUSG00000002384.3	novel	1326	6	NA	NA	7791	7852	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1489	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGAAGCCGGCACTCGGC	4272	False	NA	NA	False	NA	NA	NA	123020907	123033744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030633_123030692_123031318_123031363_123032658_123032758_123033694
ENSMUSG00000002384.3_123020908_123033744_4	chr4	+	1183	9	Genic_Genomic	ENSMUSG00000002384.3	novel	1326	6	NA	NA	7791	7852	multi-exon	FALSE	non_canonical	0	0	junction_1	0	207	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGAAGCCGGCACTCGGC	4272	False	NA	NA	False	NA	NA	NA	123020907	123033744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029501_123031318_123031363_123032658_123032758_123033702
ENSMUSG00000002384.3_123020908_123033744_5	chr4	+	1185	9	Genic_Genomic	ENSMUSG00000002384.3	novel	1326	6	NA	NA	7791	7852	multi-exon	FALSE	non_canonical	0	0	junction_1	0	450	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGAAGCCGGCACTCGGC	4272	False	NA	NA	False	NA	NA	NA	123020907	123033744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029495_123031318_123031363_123032658_123032758_123033694
ENSMUSG00000002384.3_123020908_123033744_6	chr4	+	1251	10	Genic_Genomic	ENSMUSG00000002384.3	novel	1326	6	NA	NA	7791	7852	multi-exon	FALSE	non_canonical	0	0	junction_1	0	430	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGAAGCCGGCACTCGGC	4272	False	NA	NA	False	NA	NA	NA	123020907	123033744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030593_123030692_123031318_123031363_123032658_123032758_123033702
ENSMUSG00000002395.15_71819861_71822375_3	chr8	+	847	7	NNC	ENSMUSG00000002395.15	novel	854	8	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	321.579781011735	831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACATGTCTTCAGTGCTA	NA	False	NA	21	True	AATAAA	-22	NA	71819860	71822375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821229_71821775_71821948_71822170
ENSMUSG00000002395.15_71819861_71822375_4	chr8	+	847	6	NNC	ENSMUSG00000002395.15	novel	854	8	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	342.602043192973	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACATGTCTTCAGTGCTA	NA	False	NA	21	True	AATAAA	-22	NA	71819860	71822375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821740_71821948_71822170
ENSMUSG00000002395.15_71819861_71822375_5	chr8	+	807	6	NNC	ENSMUSG00000002395.15	novel	854	8	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	400.664647804121	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACATGTCTTCAGTGCTA	NA	False	NA	21	True	AATAAA	-22	NA	71819860	71822375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71820014_71820413_71820493_71820602_71820773_71821493_71821522_71821775_71821948_71822170
ENSMUSG00000002395.15_71819861_71822375_6	chr8	+	1111	6	NNC	ENSMUSG00000002395.15	novel	854	8	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_4	342.602043192973	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACATGTCTTCAGTGCTA	NA	False	NA	21	True	AATAAA	-22	NA	71819860	71822375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820773_71821493_71821948_71822170
ENSMUSG00000002395.15_71819861_71822375_7	chr8	+	857	7	NNC	ENSMUSG00000002395.15	novel	854	8	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	312.764954345378	1433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACATGTCTTCAGTGCTA	NA	False	NA	21	True	AATAAA	-22	NA	71819860	71822375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820773_71821493_71821522_71821775_71821948_71822170
ENSMUSG00000002396.9_71823983_71825800_1	chr8	+	912	3	FSM	ENSMUSG00000002396.9	ENSMUST00000110051.2	2179	3	41	1226	0	201	multi-exon	FALSE	canonical	3	32	junction_1	15.5	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTGTGCAGCTACCTAA	NA	False	NA	11	True	AGTAAA	-16	NA	71823982	71825800	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71824630_71825392_71825447_71825589
ENSMUSG00000002396.9_71824475_71825800_1	chr8	+	420	3	FSM	ENSMUSG00000002396.9	ENSMUST00000110051.2	2179	3	533	1226	485	201	multi-exon	FALSE	canonical	3	32	junction_1	15.5	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTGTGCAGCTACCTAA	NA	False	NA	11	True	AGTAAA	-16	NA	71824474	71825800	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71824630_71825392_71825447_71825589
ENSMUSG00000002396.9_71824475_71825800_3	chr8	+	586	4	FSM	ENSMUSG00000002396.9	ENSMUST00000002469.9	1611	4	492	533	485	201	multi-exon	FALSE	canonical	3	42	junction_2	9.2736184954957	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTGTGCAGCTACCTAA	NA	False	NA	11	True	AGTAAA	-16	NA	71824474	71825800	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71824630_71825111_71825278_71825392_71825447_71825589
ENSMUSG00000002416.14_39573385_39576405_1	chr6	+	321	3	ISM	ENSMUSG00000002416.14	ENSMUST00000002490.7	491	4	3866	-49	-813	0	3prime_fragment	FALSE	canonical	3	748	junction_2	895	697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTATGTTTCTGATGACAA	NA	False	NA	30	True	ATTAAA	-39	NA	39573384	39576405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_39573530_39575199_39575296_39576325
ENSMUSG00000002455.15_181292883_181297454_1	chr2	+	570	4	ISM	ENSMUSG00000002455.15	ENSMUST00000002529.7	3054	21	49771	-1	49717	1	3prime_fragment	FALSE	canonical	3	440	junction_2	32.8261413442938	915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGGCTTGGGCCTCAC	139	False	NA	29	True	ATTAAA	-17	NA	181292882	181297454	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_181292971_181294226_181294342_181296628_181296756_181297214
ENSMUSG00000002455.15_181296664_181297454_1	chr2	+	332	2	ISM	ENSMUSG00000002455.15	ENSMUST00000002529.7	3054	21	53552	-1	53498	1	3prime_fragment	FALSE	canonical	3	512	junction_1	0	812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGGCTTGGGCCTCAC	3920	False	NA	29	True	ATTAAA	-17	NA	181296663	181297454	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_181296756_181297214
ENSMUSG00000002458.14_181330212_181335724_1	chr2	-	891	6	NIC	ENSMUSG00000002458.14	novel	1511	6	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	48.4090900554844	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTCTTTCAAGTTGCT	NA	False	NA	-12	True	AATAAA	-17	NA	181335724	181330211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_181330512_181331169_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335671
ENSMUSG00000002458.14_181330212_181335724_2	chr2	-	785	5	NIC	ENSMUSG00000002458.14	novel	1511	6	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	60.2702248212167	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTCTTTCAAGTTGCT	NA	False	NA	-12	True	AATAAA	-17	NA	181335724	181330211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_181330512_181331169_181331405_181331494_181331570_181333025_181333148_181335671
ENSMUSG00000002477.6_10617796_10627971_1	chr18	+	578	4	FSM	ENSMUSG00000002477.6	ENSMUST00000002551.5	858	4	21	259	0	16	multi-exon	FALSE	canonical	3	1823	junction_2	40.4337592722825	23295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGTTGTCTGTTGATTGT	-11	True	NA	-13	True	AATAAA	-15	NA	10617795	10627971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_10617927_10623630_10623708_10626825_10627018_10627793
ENSMUSG00000002477.6_10617796_10628083_1	chr18	+	690	4	FSM	ENSMUSG00000002477.6	ENSMUST00000002551.5	858	4	21	147	0	128	multi-exon	FALSE	canonical	3	1823	junction_2	40.4337592722825	25660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGATTTCTTTGAGTCCA	-11	True	NA	26	True	AATACA	-17	NA	10617795	10628083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_10617927_10623630_10623708_10626825_10627018_10627793
ENSMUSG00000002504.16_24858260_24859701_1	chr17	-	1237	2	ISM	ENSMUSG00000002504.16	ENSMUST00000019684.13	1717	6	4263	0	4230	0	3prime_fragment	FALSE	canonical	3	161	junction_1	0	502	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCGCCTGTGTGTTTT	NA	False	NA	-6	True	ATTAAA	-17	NA	24859701	24858259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_24859364_24859568
ENSMUSG00000002504.16_24858744_24859701_1	chr17	-	753	2	ISM	ENSMUSG00000002504.16	ENSMUST00000019684.13	1717	6	4263	484	4230	0	3prime_fragment	FALSE	canonical	3	161	junction_1	0	339	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTTCTTACCCACCCTGT	NA	False	NA	0	True	AATAAA	-21	NA	24859701	24858743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_24859364_24859568
ENSMUSG00000002580.8_98328534_98329817_1	chr11	-	752	4	NNC	ENSMUSG00000002580.8	novel	747	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	394.589237900208	5541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCGTGTGTTTATGTCCA	NA	False	NA	1	True	AATAAA	-26	NA	98329817	98328533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_98328972_98329062_98329140_98329467_98329571_98329683
ENSMUSG00000002608.9_25412220_25418470_1	chr7	-	1300	5	FSM	ENSMUSG00000002608.9	ENSMUST00000002683.3	3032	5	43	1689	0	140	multi-exon	FALSE	canonical	3	101	junction_3	5.52268050859363	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTGTGTTACTTGCTT	NA	False	NA	NA	False	NA	NA	NA	25418470	25412219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_25412539_25413777_25413908_25414175_25414446_25415159_25415613_25418342
ENSMUSG00000002625.11_32540398_32569555_1	chr17	-	1890	14	NIC	ENSMUSG00000002625.11	novel	2102	14	NA	NA	-4	0	combination_of_known_junctions	TRUE	canonical	3	17	junction_10	101.600738477491	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTTCGTTTGTGCTGTGG	NA	False	NA	0	True	AATAAA	-17	NA	32569555	32540397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557430_32557489_32557764_32557798_32564297_32564373_32569460
ENSMUSG00000002635.12_33884058_33896087_1	chr7	-	1087	7	NNC	ENSMUSG00000002635.12	novel	1295	7	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	88	junction_6	249.733190959205	4761	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATATGTGTTTACCTTAT	5731	False	NA	NA	False	ATTAAA	-20	NA	33896087	33884057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_33884237_33885718_33885868_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895789_33895960
ENSMUSG00000002635.12_33884058_33896087_2	chr7	-	1162	7	FSM	ENSMUSG00000002635.12	ENSMUST00000002710.10	1295	7	-1	134	-1	0	multi-exon	FALSE	canonical	3	638	junction_2	61.3994209165599	5676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATATGTGTTTACCTTAT	5731	False	NA	NA	False	ATTAAA	-20	NA	33896087	33884057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_33884237_33885718_33885868_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
ENSMUSG00000002658.10_57310405_57311428_1	chr17	-	651	5	ISM	ENSMUSG00000002658.10	ENSMUST00000002733.7	1717	13	6860	0	6860	0	3prime_fragment	FALSE	canonical	3	585	junction_3	56.3227307576612	597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTGTGCGAGTCATCA	NA	False	NA	-6	True	AATAAA	-13	NA	57311428	57310404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308
ENSMUSG00000002658.10_57310405_57311429_1	chr17	-	647	5	NNC	ENSMUSG00000002658.10	novel	1717	13	NA	NA	6859	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	283.053881796382	122	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTGTGCGAGTCATCA	NA	False	NA	-6	True	AATAAA	-13	NA	57311429	57310404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_57310632_57310720_57310807_57310914_57311054_57311121_57311196_57311308
ENSMUSG00000002658.10_57310405_57318300_1	chr17	-	1721	13	NNC	ENSMUSG00000002658.10	novel	1717	13	NA	NA	-12	0	at_least_one_novel_splicesite	TRUE	canonical	3	23	junction_12	170.711419913516	1280	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTGTGCGAGTCATCA	NA	False	NA	-6	True	AATAAA	-13	NA	57318300	57310404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318015_57318108
ENSMUSG00000002658.10_57310405_57318300_2	chr17	-	1723	13	NNC	ENSMUSG00000002658.10	novel	1717	13	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	176.841972770418	1148	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTGTGCGAGTCATCA	NA	False	NA	-6	True	AATAAA	-13	NA	57318300	57310404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_57310632_57310720_57310812_57310914_57311048_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
ENSMUSG00000002658.10_57310405_57318398_1	chr17	-	1822	13	NNC	ENSMUSG00000002658.10	novel	1717	13	NA	NA	-110	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	172.075786759465	1140	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTGTGCGAGTCATCA	NA	False	NA	-6	True	AATAAA	-13	NA	57318398	57310404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_57310632_57310720_57310807_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
ENSMUSG00000002658.10_57310405_57318398_2	chr17	-	1827	13	FSM	ENSMUSG00000002658.10	ENSMUST00000002733.7	1717	13	-110	0	-110	0	multi-exon	FALSE	canonical	3	510	junction_7	59.552672763977	1857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTGTGCGAGTCATCA	NA	False	NA	-6	True	AATAAA	-13	NA	57318398	57310404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
ENSMUSG00000002660.9_57297305_57303188_1	chr17	+	795	5	NIC	ENSMUSG00000002660.9	novel	983	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_3	615.837032014152	737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGAAGCACCTTCCATT	NA	False	NA	33	True	ATTAAA	-21	NA	57297304	57303188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_57297514_57297605_57297678_57298293_57298391_57300447_57300554_57302877
ENSMUSG00000002661.15_57304343_57306137_1	chr17	+	732	4	FSM	ENSMUSG00000002661.15	ENSMUST00000002737.7	917	4	0	185	0	0	multi-exon	FALSE	canonical	3	443	junction_1	15.369522511198	5744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGGGATCTTCAAATG	371	False	NA	4	True	AATAAA	-14	NA	57304342	57306137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57304568_57305388_57305563_57305670_57305796_57305929
ENSMUSG00000002668.9_57369165_57372918_1	chr17	-	1127	4	NIC	ENSMUSG00000002668.9	novel	2984	21	NA	NA	1974	3740	intron_retention	FALSE	non_canonical	0	0	junction_1	0	478	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGGGCCGCGCCGCCAGA	NA	False	NA	NA	False	NA	NA	NA	57372918	57369164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_57369229_57369594_57369767_57370636_57370699_57372089
ENSMUSG00000002668.9_57369283_57372918_1	chr17	-	774	5	NNC	ENSMUSG00000002668.9	novel	2984	21	NA	NA	1974	3622	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	415	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGATCCCACCCGCCCCGC	NA	False	NA	NA	False	NA	NA	NA	57372918	57369282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_57369369_57369594_57369767_57370636_57370699_57372089_57372234_57372608
ENSMUSG00000002668.9_57373055_57377672_1	chr17	-	1275	8	NIC	ENSMUSG00000002668.9	novel	2521	24	NA	NA	1125	0	combination_of_known_junctions	TRUE	canonical	3	18	junction_2	6.23027499638758	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGTATCTGGGGCTTTC	NA	False	NA	NA	False	AATAAA	-21	NA	57377672	57373054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_57373642_57373731_57373943_57374048_57374117_57374592_57374701_57374788_57374834_57377112_57377185_57377407_57377449_57377529
ENSMUSG00000002679.15_81620334_81641747_1	chr12	-	1090	9	NNC	ENSMUSG00000002679.15	novel	1059	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_8	207.176517431392	3140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGCCTTTCCCTTGTCTC	NA	False	NA	-2	True	AATAAA	-22	NA	81641747	81620333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_81620735_81621298_81621327_81626343_81626460_81628574_81628684_81629406_81629490_81635756_81635849_81638027_81638188_81640654_81640722_81641713
ENSMUSG00000002679.15_81620334_81641747_2	chr12	-	1013	8	NNC	ENSMUSG00000002679.15	novel	1059	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	165.639761567822	3153	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGCCTTTCCCTTGTCTC	NA	False	NA	-2	True	AATAAA	-22	NA	81641747	81620333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_81620735_81621298_81621327_81626343_81626460_81628574_81628674_81629406_81629490_81635756_81635849_81638027_81638188_81641713
ENSMUSG00000002728.15_145745182_145758238_1	chr2	+	999	5	NNC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	0	-107	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	559.902223606944	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTGGAAGTTTGTTG	NA	False	NA	-43	True	AGTAAA	-18	NA	145745181	145758238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_145745287_145753586_145753684_145754312_145754449_145757453_145757600_145757723
ENSMUSG00000002728.15_145745182_145758238_2	chr2	+	1014	6	FSM	ENSMUSG00000002728.15	ENSMUST00000110000.8	1142	6	21	107	0	-107	multi-exon	FALSE	canonical	3	961	junction_2	184.608775522725	6175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTGGAAGTTTGTTG	NA	False	NA	-43	True	AGTAAA	-18	NA	145745181	145758238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_145745283_145750510_145750536_145753592_145753684_145754312_145754449_145757453_145757600_145757723
ENSMUSG00000002728.15_145745182_145758238_3	chr2	+	965	5	NIC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	0	-107	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	539.338657524194	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTGGAAGTTTGTTG	NA	False	NA	-43	True	AGTAAA	-18	NA	145745181	145758238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_145745283_145753616_145753684_145754312_145754449_145757453_145757600_145757723
ENSMUSG00000002728.15_145745182_145758238_4	chr2	+	1013	5	NNC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	0	-107	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	559.902223606944	1175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTGGAAGTTTGTTG	NA	False	NA	-43	True	AGTAAA	-18	NA	145745181	145758238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_145745307_145753592_145753684_145754312_145754449_145757453_145757600_145757723
ENSMUSG00000002728.15_145745182_145758238_5	chr2	+	709	7	NNC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	0	-107	at_least_one_novel_splicesite	FALSE	non_canonical	3	24	junction_6	449.099623939079	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTGGAAGTTTGTTG	NA	False	NA	-43	True	AGTAAA	-18	NA	145745181	145758238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_145745283_145750510_145750536_145753592_145753684_145754312_145754449_145757453_145757600_145757723_145757808_145758112
ENSMUSG00000002728.15_145745182_145758238_6	chr2	+	1044	6	FSM	ENSMUSG00000002728.15	ENSMUST00000002805.14	1172	6	21	107	0	-107	multi-exon	FALSE	canonical	3	102	junction_3	436.248094551713	4877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTGGAAGTTTGTTG	NA	False	NA	-43	True	AGTAAA	-18	NA	145745181	145758238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_145745283_145750510_145750536_145753592_145753714_145754312_145754449_145757453_145757600_145757723
ENSMUSG00000002728.15_145745182_145758238_7	chr2	+	989	5	NIC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	0	-107	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	559.902223606944	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTGGAAGTTTGTTG	NA	False	NA	-43	True	AGTAAA	-18	NA	145745181	145758238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_145745283_145753592_145753684_145754312_145754449_145757453_145757600_145757723
ENSMUSG00000002731.7_76460533_76478360_1	chr2	-	1324	8	FSM	ENSMUSG00000002731.7	ENSMUST00000002808.7	1614	8	-1	291	-1	-291	multi-exon	FALSE	canonical	3	32	junction_1	7.52953368748825	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGAGTGTGGTTTTCATT	NA	False	NA	NA	False	TATAAA	-14	NA	76478360	76460532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_76460913_76463876_76464052_76467138_76467234_76469543_76469662_76470584_76470664_76473566_76473649_76477468_76477639_76478135
ENSMUSG00000002732.15_76493388_76503429_1	chr2	-	991	5	NIC	ENSMUSG00000002732.15	novel	860	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	15.9118666409696	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGCAAATCTGACT	NA	False	NA	-13	True	AATAAA	-26	NA	76503429	76493387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_76493697_76496020_76496155_76497670_76497787_76502040_76502193_76503149
ENSMUSG00000002733.9_76513155_76517851_1	chr2	+	438	3	ISM	ENSMUSG00000002733.9	ENSMUST00000111920.2	2534	8	7530	9321	-7042	-5257	internal_fragment	FALSE	canonical	3	231	junction_1	20.5	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGTTCGTGTGTATGTG	NA	False	NA	7	True	ATTAAA	-7	NA	76513154	76517851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_76513230_76516962_76517100_76517625
ENSMUSG00000002741.10_5905693_5916294_1	chr11	+	1055	7	FSM	ENSMUSG00000002741.10	ENSMUST00000002818.9	2541	7	0	1486	0	-1486	multi-exon	FALSE	canonical	3	192	junction_4	17.3205080756888	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTGCTGAAGGGCTTATT	NA	False	NA	24	True	CATAAA	-17	NA	5905692	5916294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_5906005_5909296_5909380_5911187_5911289_5912336_5912442_5912692_5912759_5914560_5914663_5916008
ENSMUSG00000002768.9_46992050_46994028_1	chr17	+	778	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233491.2	673	4	121	-226	0	0	multi-exon	FALSE	canonical	3	42	junction_1	413.462076723959	1900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCACACCGCCTGTGCT	NA	False	NA	-4	True	AATAAA	-21	NA	46992049	46994028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_46992060_46992542_46992824_46992934_46993038_46993644
ENSMUSG00000002768.9_46992050_46994028_2	chr17	+	807	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233430.2	945	4	138	0	0	0	multi-exon	FALSE	canonical	3	590	junction_1	155.5913450892	6845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCACACCGCCTGTGCT	NA	False	NA	-4	True	AATAAA	-21	NA	46992049	46994028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_46992089_46992542_46992824_46992934_46993038_46993644
ENSMUSG00000002768.9_46992050_46994166_1	chr17	+	945	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233430.2	945	4	138	-138	0	129	multi-exon	FALSE	canonical	3	590	junction_1	155.5913450892	7190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGCTTGGAGCACTGCT	NA	False	NA	NA	False	AATAAA	-16	NA	46992049	46994166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_46992089_46992542_46992824_46992934_46993038_46993644
ENSMUSG00000002769.10_47036590_47039952_1	chr17	-	893	6	FSM	ENSMUSG00000002769.10	ENSMUST00000002846.9	1035	6	142	0	142	0	multi-exon	FALSE	canonical	3	17	junction_3	8.1338797630651	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCCTGGTGTTTCTT	3121	False	NA	NA	False	AGTAAA	-23	NA	47039952	47036589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_47036898_47036986_47037109_47037194_47037338_47037531_47037643_47038190_47038319_47039871
ENSMUSG00000002769.10_47036590_47039952_2	chr17	-	750	5	NIC	ENSMUSG00000002769.10	novel	1035	6	NA	NA	142	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	9.86154146165801	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCCTGGTGTTTCTT	3121	False	NA	NA	False	AGTAAA	-23	NA	47039952	47036589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_47036898_47036986_47037109_47037531_47037643_47038190_47038319_47039871
ENSMUSG00000002769.10_47036590_47040094_1	chr17	-	892	5	NIC	ENSMUSG00000002769.10	novel	1035	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	9.86154146165801	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCCTGGTGTTTCTT	2979	False	NA	NA	False	AGTAAA	-23	NA	47040094	47036589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_47036898_47036986_47037109_47037531_47037643_47038190_47038319_47039871
ENSMUSG00000002778.15_45522249_45532671_1	chr7	+	1061	5	FSM	ENSMUSG00000002778.15	ENSMUST00000002855.14	1599	5	53	485	0	0	multi-exon	FALSE	canonical	3	208	junction_1	16.5378354085412	740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGTTTTTGATTCTGATG	3997	False	NA	15	True	AAGAAA	-25	NA	45522248	45532671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45531177_45532400
ENSMUSG00000002778.15_45522249_45533742_1	chr7	+	2132	5	FSM	ENSMUSG00000002778.15	ENSMUST00000002855.14	1599	5	53	-586	0	586	multi-exon	FALSE	canonical	3	208	junction_1	16.5378354085412	3367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCTTGCTAGCTTTTAAA	3997	False	NA	NA	False	AATAAA	-24	NA	45522248	45533742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45531177_45532400
ENSMUSG00000002781.20_45546847_45566837_1	chr7	+	2148	7	FSM	ENSMUSG00000002781.20	ENSMUST00000209350.2	2466	7	322	-4	0	0	multi-exon	FALSE	canonical	3	48	junction_2	6.94422221866655	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGAGTAGTGTGGCTGC	5974	False	NA	7	True	AATAAA	-14	NA	45546846	45566837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45547091_45549055_45549161_45556341_45556537_45557530_45557662_45558745_45559026_45565506_45565697_45565834
ENSMUSG00000002797.10_54962633_54966445_1	chr6	-	534	3	NNC	ENSMUSG00000002797.10	novel	3960	4	NA	NA	3164	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	82.5	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGCCGTGGGTTCTCCT	6190	False	NA	-2	True	ATTAAA	-32	NA	54966445	54962632	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_54962987_54963817_54963949_54966396
ENSMUSG00000002797.10_54962633_54969856_2	chr6	-	813	4	FSM	ENSMUSG00000002797.10	ENSMUST00000131475.2	3960	4	79	3068	-8	0	multi-exon	FALSE	canonical	3	101	junction_2	27.1947707391615	2366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGCCGTGGGTTCTCCT	2779	False	NA	-2	True	ATTAAA	-32	NA	54969856	54962632	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_54962987_54963817_54963954_54966396_54966543_54969679
ENSMUSG00000002797.10_54962633_54969856_3	chr6	-	725	4	FSM	ENSMUSG00000002797.10	ENSMUST00000204301.3	431	4	-10	-284	-8	0	multi-exon	FALSE	canonical	3	46	junction_2	52.7320269538984	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGCCGTGGGTTCTCCT	2779	False	NA	-2	True	ATTAAA	-32	NA	54969856	54962632	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_54962987_54963817_54963954_54966484_54966543_54969679
ENSMUSG00000002804.5_112898349_112905744_1	chr12	-	755	5	NNC	ENSMUSG00000002804.5	novel	1241	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	85.8527081692826	1163	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCCGCTGGCTTTGAGC	8847	False	NA	-6	True	AATAAA	-19	NA	112905744	112898348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_112898671_112901975_112902166_112902414_112902480_112902898_112902943_112905610
ENSMUSG00000002804.5_112898349_112905744_2	chr12	-	565	4	FSM	ENSMUSG00000002804.5	ENSMUST00000221497.2	355	4	-14	-196	0	0	multi-exon	FALSE	canonical	2	11	junction_1	100.422441051125	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCCGCTGGCTTTGAGC	8847	False	NA	-6	True	AATAAA	-19	NA	112905744	112898348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_112898671_112902414_112902480_112902898_112902943_112905610
ENSMUSG00000002804.5_112898349_112905744_3	chr12	-	803	5	FSM	ENSMUSG00000002804.5	ENSMUST00000221397.2	1241	5	0	438	0	0	multi-exon	FALSE	canonical	3	180	junction_2	18.0277563773199	1498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCCGCTGGCTTTGAGC	8847	False	NA	-6	True	AATAAA	-19	NA	112905744	112898348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_112898671_112901975_112902214_112902414_112902480_112902898_112902943_112905610
ENSMUSG00000002808.8_19776000_19803974_1	chr13	-	2239	3	FSM	ENSMUSG00000002808.8	ENSMUST00000002885.8	2363	3	0	124	0	-124	multi-exon	FALSE	canonical	3	59	junction_2	5.5	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTATTCTTTGATGTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	19803974	19775999	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_19777519_19778616_19778826_19803463
ENSMUSG00000002820.7_21176602_21180751_1	chr9	+	1165	6	NIC	ENSMUSG00000002820.7	novel	5951	10	NA	NA	0	2528	combination_of_known_junctions	FALSE	canonical	1	3	junction_5	199.915382099527	482	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAATGTTAGCCATTGCT	8647	False	NA	NA	False	AATAAA	-21	NA	21176601	21180751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_21177014_21178034_21178119_21178202_21178377_21179546_21179824_21179900_21179966_21180598
ENSMUSG00000002820.7_21176602_21185043_1	chr9	+	1886	10	NNC	ENSMUSG00000002820.7	novel	5951	10	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_8	152.03800694417	731	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCTGGCGTTGTTGACA	8647	False	NA	23	True	GATAAA	-15	NA	21176601	21185043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_21177014_21178034_21178119_21178202_21178377_21179546_21179824_21179900_21179966_21182015_21182147_21183763_21183843_21183931_21184009_21184113_21184207_21184549
ENSMUSG00000002820.7_21184753_21193173_1	chr9	+	2042	13	NIC	ENSMUSG00000002820.7	novel	5951	10	NA	NA	5379	4105	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	103	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATCACTGCTGTCCTCCA	386	False	NA	NA	False	NA	NA	NA	21184752	21193173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_21185545_21186564_21186664_21186732_21186798_21187139_21187271_21187350_21187478_21187680_21187770_21187855_21187932_21190656_21190828_21191459_21191556_21191658_21191786_21192337_21192466_21192957_21193036_21193110
ENSMUSG00000002825.9_21323133_21331423_1	chr9	+	1169	10	FSM	ENSMUSG00000002825.9	ENSMUST00000002902.8	1316	10	0	147	0	0	multi-exon	FALSE	canonical	3	687	junction_5	65.5845510263914	880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTCTGTCCTGCCTGGG	2369	False	NA	NA	False	NA	NA	NA	21323132	21331423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920_21331009_21331331
ENSMUSG00000002825.9_21323133_21331557_1	chr9	+	1151	10	NIC	ENSMUSG00000002825.9	novel	1316	10	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	46	junction_1	249.047568464389	869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTGTTTTCATTTAAGC	2369	False	NA	29	True	TATAAA	-15	NA	21323132	21331557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_21323242_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920_21331009_21331331
ENSMUSG00000002825.9_21323133_21331557_2	chr9	+	1313	10	NIC	ENSMUSG00000002825.9	novel	1316	10	NA	NA	0	1	intron_retention	FALSE	canonical	3	37	junction_5	251.720205244623	3266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTGTTTTCATTTAAGC	2369	False	NA	29	True	TATAAA	-15	NA	21323132	21331557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328694_21329579_21329719_21330586_21330663_21330734_21330845_21330920_21331009_21331331
ENSMUSG00000002825.9_21323133_21331557_3	chr9	+	1298	10	NNC	ENSMUSG00000002825.9	novel	1316	10	NA	NA	0	1	intron_retention	FALSE	canonical	1	1	junction_4	257.441015658364	3301	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTGTTTTCATTTAAGC	2369	False	NA	29	True	TATAAA	-15	NA	21323132	21331557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328572_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920_21331009_21331331
ENSMUSG00000002831.15_56386638_56407607_1	chr17	-	2308	16	NIC	ENSMUSG00000002831.15	novel	5755	9	NA	NA	9195	20953	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2633	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTATTGGGTTCAGCACGA	9745	False	NA	NA	False	NA	NA	NA	56407607	56386637	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403820_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
ENSMUSG00000002833.12_56404880_56407607_1	chr17	+	954	7	ISM	ENSMUSG00000002833.12	ENSMUST00000225843.2	2238	16	18181	-9	-337	0	3prime_fragment	FALSE	canonical	3	635	junction_6	99.4324170256137	2388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTATTGGCTTAGGTGC	NA	False	NA	NA	False	TATAAA	-25	NA	56404879	56407607	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
ENSMUSG00000002833.12_56406175_56407607_1	chr17	+	623	3	NNC	ENSMUSG00000002833.12	novel	594	4	NA	NA	194	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	444.5	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTATTGGCTTAGGTGC	NA	False	NA	NA	False	TATAAA	-25	NA	56406174	56407607	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_56406388_56406858_56407006_56407344
ENSMUSG00000002833.12_56406175_56407607_2	chr17	+	603	3	ISM	ENSMUSG00000002833.12	ENSMUST00000224101.2	594	4	436	-225	194	0	3prime_fragment	FALSE	canonical	3	635	junction_2	129	780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTATTGGCTTAGGTGC	NA	False	NA	NA	False	TATAAA	-25	NA	56406174	56407607	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_56406388_56406858_56406986_56407344
ENSMUSG00000002835.10_56364743_56375027_1	chr17	+	2228	10	ISM	ENSMUSG00000002835.10	ENSMUST00000002914.10	5535	14	17304	2249	0	-805	3prime_fragment	TRUE	canonical	3	402	junction_1	52.9593368352049	207	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCTGTCTTCTGTCTCA	NA	False	NA	21	True	TATAAA	-15	NA	56364742	56375027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_56364921_56365983_56366066_56366257_56366327_56369084_56369312_56369550_56369720_56369810_56369892_56370327_56370421_56371000_56371257_56371973_56372426_56374406
ENSMUSG00000002835.10_56372390_56375027_1	chr17	+	657	2	ISM	ENSMUSG00000002835.10	ENSMUST00000233325.2	7698	11	18576	4262	7647	-805	internal_fragment	FALSE	canonical	3	585	junction_1	0	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCTGTCTTCTGTCTCA	NA	False	NA	21	True	TATAAA	-15	NA	56372389	56375027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_56372426_56374406
ENSMUSG00000002835.10_56375250_56382017_1	chr17	+	1733	11	NIC	ENSMUSG00000002835.10	novel	7698	11	NA	NA	10507	2728	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	793	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGGAAGTCCCGCCTGGTT	2806	False	NA	NA	False	AAGAAA	-11	NA	56375249	56382017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_56375684_56375959_56376109_56376183_56376315_56376393_56376614_56376690_56376776_56377651_56377728_56377887_56377986_56379400_56379530_56379719_56379785_56380072_56380237_56381835
ENSMUSG00000002835.10_56375536_56382017_1	chr17	+	1239	9	NNC	ENSMUSG00000002835.10	novel	5535	14	NA	NA	10793	2728	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	62	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGGAAGTCCCGCCTGGTT	3092	False	NA	NA	False	AAGAAA	-11	NA	56375535	56382017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_56375684_56375959_56376109_56376183_56376315_56376393_56376614_56376690_56376776_56377651_56377728_56377887_56377973_56380073_56380237_56381835
ENSMUSG00000002835.10_56375536_56382017_2	chr17	+	1447	11	NIC	ENSMUSG00000002835.10	novel	5535	14	NA	NA	10793	2728	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	472	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGGAAGTCCCGCCTGGTT	3092	False	NA	NA	False	AAGAAA	-11	NA	56375535	56382017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_56375684_56375959_56376109_56376183_56376315_56376393_56376614_56376690_56376776_56377651_56377728_56377887_56377986_56379400_56379530_56379719_56379785_56380072_56380237_56381835
ENSMUSG00000002844.10_38265766_38269511_1	chr16	-	1170	3	NNC	ENSMUSG00000002844.10	novel	2966	4	NA	NA	3533	-1374	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	664	1835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTGTCTGACTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	38269511	38265765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_38266467_38267609_38267971_38269403
ENSMUSG00000002844.10_38265766_38273044_1	chr16	-	1571	4	FSM	ENSMUSG00000002844.10	ENSMUST00000002923.10	2966	4	21	1374	0	-1374	multi-exon	FALSE	canonical	3	1151	junction_2	86.2824818063706	6609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTGTCTGACTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	38273044	38265765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_38266467_38267609_38267971_38270490_38270846_38272890
ENSMUSG00000002845.15_38378895_38411746_1	chr16	+	2004	9	FSM	ENSMUSG00000002845.15	ENSMUST00000163884.8	1645	9	-165	-194	-165	38	multi-exon	FALSE	canonical	1	310	junction_8	142.984210229661	5390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	6905	False	NA	23	True	AGTAAA	-14	NA	38378894	38411746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
ENSMUSG00000002845.15_38379060_38411746_1	chr16	+	1839	9	FSM	ENSMUSG00000002845.15	ENSMUST00000163884.8	1645	9	0	-194	0	38	multi-exon	FALSE	canonical	1	310	junction_8	142.984210229661	5393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	7070	False	NA	23	True	AGTAAA	-14	NA	38379059	38411746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
ENSMUSG00000002845.15_38383223_38411746_1	chr16	+	1965	9	NNC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	0	38	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_8	306.891445587849	834	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	NA	False	NA	23	True	AGTAAA	-14	NA	38383222	38411746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_38383410_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408670_38411273
ENSMUSG00000002845.15_38393598_38411746_1	chr16	+	1201	7	ISM	ENSMUSG00000002845.15	ENSMUST00000171687.8	2667	9	10424	778	-2206	38	3prime_fragment	FALSE	canonical	1	87	junction_3	263.187301280961	1678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	NA	False	NA	23	True	AGTAAA	-14	NA	38393597	38411746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408666_38411273
ENSMUSG00000002845.15_38408593_38411746_1	chr16	+	550	2	NNC	ENSMUSG00000002845.15	novel	660	2	NA	NA	192	38	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	4621	False	NA	23	True	AGTAAA	-14	NA	38408592	38411746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_38408670_38411273
ENSMUSG00000002845.15_38408593_38411746_2	chr16	+	541	2	NNC	ENSMUSG00000002845.15	novel	660	2	NA	NA	192	38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	4621	False	NA	23	True	AGTAAA	-14	NA	38408592	38411746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_38408659_38411271
ENSMUSG00000002846.10_38318709_38370544_1	chr16	-	2287	16	Fusion	ENSMUSG00000002846.10_ENSMUSG00000034064.15	novel	1573	7	NA	NA	40	0	multi-exon	FALSE	canonical	3	59	junction_6	371.529176362892	219	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTGTCTGGATCGCCT	6306	False	NA	-16	True	AGTAAA	-22	NA	38370544	38318708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
ENSMUSG00000002846.10_38319004_38343003_1	chr16	-	1256	7	FSM	ENSMUSG00000002846.10	ENSMUST00000002925.6	1573	7	22	295	0	-295	multi-exon	FALSE	canonical	3	208	junction_6	22.2666916167525	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCTTCCGATCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	38343003	38319003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38342702
ENSMUSG00000002846.10_38337022_38343003_1	chr16	-	771	3	NNC	ENSMUSG00000002846.10	novel	678	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	92	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAATTTTAGTATTTAAT	NA	False	NA	-4	True	ATTAAA	-19	NA	38343003	38337021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_38337326_38338728_38338895_38342702
ENSMUSG00000002846.10_38337022_38343003_2	chr16	-	693	3	NNC	ENSMUSG00000002846.10	novel	678	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	9.5	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAATTTTAGTATTTAAT	NA	False	NA	-4	True	ATTAAA	-19	NA	38343003	38337021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_38337233_38338728_38338895_38342687
ENSMUSG00000002847.8_38216479_38228048_1	chr16	-	878	5	ISM	ENSMUSG00000002847.8	ENSMUST00000002926.8	1974	11	25459	0	10108	0	3prime_fragment	FALSE	canonical	3	158	junction_2	28.8823042709546	1513	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTTGGTTGTTTTGTTG	NA	False	NA	-3	True	AATAAA	-20	NA	38228048	38216478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_38216898_38217700_38217866_38221237_38221347_38225898_38225989_38227953
ENSMUSG00000002847.8_38216479_38228048_2	chr16	-	769	4	NIC	ENSMUSG00000002847.8	novel	1974	11	NA	NA	10108	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	90.7389417811094	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTTGGTTGTTTTGTTG	NA	False	NA	-3	True	AATAAA	-20	NA	38228048	38216478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_38216898_38217700_38217866_38225898_38225989_38227953
ENSMUSG00000002847.8_38216479_38228048_3	chr16	-	868	5	NNC	ENSMUSG00000002847.8	novel	1974	11	NA	NA	10108	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	79.8197187416744	1409	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTTGGTTGTTTTGTTG	NA	False	NA	-3	True	AATAAA	-20	NA	38228048	38216478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_38216898_38217700_38217866_38221237_38221337_38225898_38225989_38227953
ENSMUSG00000002847.8_38216479_38236027_1	chr16	-	1483	10	NNC	ENSMUSG00000002847.8	novel	1974	11	NA	NA	2129	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_9	86.1821212589442	1725	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTTGGTTGTTTTGTTG	NA	False	NA	-3	True	AATAAA	-20	NA	38236027	38216478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_38216898_38217700_38217866_38221237_38221347_38225898_38225989_38227953_38228122_38229956_38230047_38232447_38232550_38235130_38235240_38235679_38235858_38235974
ENSMUSG00000002870.9_88860456_88861426_1	chr6	-	701	2	NNC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	7471	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	771	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGGTTCTGGTTTAA	NA	False	NA	-3	True	AATAAA	-16	NA	88861426	88860455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_88861088_88861357
ENSMUSG00000002885.15_84441806_84449906_1	chr8	-	1578	11	NNC	ENSMUSG00000002885.15	novel	2980	18	NA	NA	1532	8074	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4301	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTATAAGGACGCTGTCG	NA	False	NA	NA	False	NA	NA	NA	84449906	84441805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_84441967_84446015_84446228_84446440_84446569_84447184_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ENSMUSG00000002885.15_84441901_84449906_1	chr8	-	1479	11	NNC	ENSMUSG00000002885.15	novel	2980	18	NA	NA	1532	7979	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1175	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACGCGCGCTACAGTGCTT	NA	False	NA	NA	False	NA	NA	NA	84449906	84441900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_84441967_84446026_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ENSMUSG00000002885.15_84441901_84449906_2	chr8	-	1490	11	NIC	ENSMUSG00000002885.15	novel	2980	18	NA	NA	1532	7979	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	5595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACGCGCGCTACAGTGCTT	NA	False	NA	NA	False	NA	NA	NA	84449906	84441900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ENSMUSG00000002885.15_84441901_84449906_3	chr8	-	1484	11	NNC	ENSMUSG00000002885.15	novel	2980	18	NA	NA	1532	7979	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2051	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACGCGCGCTACAGTGCTT	NA	False	NA	NA	False	NA	NA	NA	84449906	84441900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_84441967_84446015_84446228_84446440_84446569_84447177_84447265_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ENSMUSG00000002885.15_84441901_84449983_1	chr8	-	1560	11	NNC	ENSMUSG00000002885.15	novel	2980	18	NA	NA	1455	7979	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3967	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACGCGCGCTACAGTGCTT	NA	False	NA	NA	False	NA	NA	NA	84449983	84441900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_84441967_84446015_84446228_84446440_84446569_84447184_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ENSMUSG00000002885.15_84442177_84449906_1	chr8	-	1723	11	NIC	ENSMUSG00000002885.15	novel	2980	18	NA	NA	1532	7703	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCCCATCACCGTCCCCG	NA	False	NA	NA	False	NA	NA	NA	84449906	84442176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_84442476_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ENSMUSG00000002885.15_84454177_84467812_1	chr8	-	1518	11	ISM	ENSMUSG00000002885.15	ENSMUST00000109802.3	2867	19	-10	4184	0	0	5prime_fragment	FALSE	canonical	3	115	junction_7	23.9768638483018	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCACAGCTGTGGGGTG	NA	False	NA	NA	False	AATAAA	-36	NA	84467812	84454176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84460042_84460196_84460637_84460755_84460924_84460982_84467735
ENSMUSG00000002910.12_71287773_71291828_1	chr8	-	1901	7	ISM	ENSMUSG00000002910.12	ENSMUST00000002989.11	2355	8	536	0	334	0	intron_retention	FALSE	canonical	0	0	junction_5	38.4476556141232	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCCGTCTTTTCATTTG	NA	False	NA	-1	True	AATAAA	-20	NA	71291828	71287772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_71288639_71288863_71289022_71289501_71289665_71289753_71290011_71290087_71290191_71291337_71291486_71291622
ENSMUSG00000002948.20_4288829_4297897_1	chr8	+	3409	11	FSM	ENSMUSG00000002948.20	ENSMUST00000110998.9	3497	11	89	-1	0	0	multi-exon	FALSE	canonical	3	271	junction_7	24.9617707705203	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGTGTCCTAAGCCTGG	NA	False	NA	20	True	AATAAA	-21	NA	4288828	4297897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_4289034_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694
ENSMUSG00000002949.16_4309731_4324232_1	chr8	-	1719	12	ISM	ENSMUSG00000002949.16	ENSMUST00000003029.14	1790	13	1681	0	1617	0	3prime_fragment	FALSE	canonical	3	458	junction_5	36.1724519626709	995	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAACGGTTTGAAGTGT	1092	False	NA	-13	True	AATAAA	-22	NA	4324232	4309730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4315277_4316555_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136
ENSMUSG00000002963.18_44506563_44512074_1	chr7	+	1862	16	FSM	ENSMUSG00000002963.18	ENSMUST00000003044.14	2184	16	-20	342	0	0	multi-exon	FALSE	canonical	3	182	junction_9	24.7059147214229	787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCCATCTTGCTGGG	9315	False	NA	15	True	AATAAA	-17	NA	44506562	44512074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
ENSMUSG00000002963.18_44506764_44512074_1	chr7	+	1364	15	NIC	ENSMUSG00000002963.18	novel	1770	17	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_2	62.5039182445258	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCCATCTTGCTGGG	9516	False	NA	15	True	AATAAA	-17	NA	44506763	44512074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_44506979_44507586_44507634_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
ENSMUSG00000002963.18_44506764_44512074_2	chr7	+	1661	16	FSM	ENSMUSG00000002963.18	ENSMUST00000003044.14	2184	16	181	342	0	0	multi-exon	FALSE	canonical	3	182	junction_9	24.7059147214229	750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCCATCTTGCTGGG	9516	False	NA	15	True	AATAAA	-17	NA	44506763	44512074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
ENSMUSG00000002963.18_44506764_44512416_1	chr7	+	2003	16	FSM	ENSMUSG00000002963.18	ENSMUST00000003044.14	2184	16	181	0	0	0	multi-exon	FALSE	canonical	3	182	junction_9	24.7059147214229	819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGACTTAGCAGCTGTGT	9516	False	NA	90	True	NA	NA	NA	44506763	44512416	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
ENSMUSG00000002984.18_19435238_19436872_1	chr7	-	645	2	ISM	ENSMUSG00000002984.18	ENSMUST00000174476.2	620	5	8018	-508	193	0	3prime_fragment	FALSE	canonical	3	2733	junction_1	0	239	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGAGGCCTCGGTTTTC	NA	False	NA	-13	True	NA	NA	NA	19436872	19435237	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_19435783_19436772
ENSMUSG00000002985.17_19430197_19432977_1	chr7	-	1109	4	FSM	ENSMUSG00000002985.17	ENSMUST00000174064.9	1408	4	136	163	0	0	multi-exon	FALSE	canonical	3	8700	junction_3	835.854984764436	38928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGAGTCTCTGTGAGT	NA	False	NA	-30	True	AATAAA	-14	NA	19432977	19430196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19431029_19431403_19431573_19432112_19432179_19432935
ENSMUSG00000002996.18_31976455_32000220_1	chr12	-	2626	11	FSM	ENSMUSG00000002996.18	ENSMUST00000172314.9	3142	11	314	202	0	-202	multi-exon	FALSE	canonical	3	134	junction_10	30.1004983347452	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTGATTTCTGGTTGA	NA	False	NA	-8	True	AATAAA	-16	NA	32000220	31976454	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_31977507_31978582_31978725_31980680_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
ENSMUSG00000003037.17_72915203_72934106_1	chr8	+	749	8	FSM	ENSMUSG00000003037.17	ENSMUST00000003121.9	4550	8	159	3642	0	-3642	multi-exon	FALSE	canonical	3	900	junction_6	72.9808473617062	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTAACCGTCTGATCTTTT	NA	False	NA	NA	False	NA	NA	NA	72915202	72934106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_72915327_72922270_72922332_72925083_72925145_72928369_72928448_72929683_72929774_72930166_72930233_72931463_72931515_72933888
ENSMUSG00000003037.17_72915203_72934695_1	chr8	+	1338	8	FSM	ENSMUSG00000003037.17	ENSMUST00000003121.9	4550	8	159	3053	0	-3053	multi-exon	FALSE	canonical	3	900	junction_6	72.9808473617062	1425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATCTGTCTTTGATTTTC	NA	False	NA	19	True	NA	NA	NA	72915202	72934695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_72915327_72922270_72922332_72925083_72925145_72928369_72928448_72929683_72929774_72930166_72930233_72931463_72931515_72933888
ENSMUSG00000003037.17_72915203_72935122_1	chr8	+	1765	8	FSM	ENSMUSG00000003037.17	ENSMUST00000003121.9	4550	8	159	2626	0	-2626	multi-exon	FALSE	canonical	3	900	junction_6	72.9808473617062	2354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACCTGCCCTCCCCTGGA	NA	False	NA	22	True	ATTAAA	-19	NA	72915202	72935122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_72915327_72922270_72922332_72925083_72925145_72928369_72928448_72929683_72929774_72930166_72930233_72931463_72931515_72933888
ENSMUSG00000003038.16_133692049_133695219_1	chr4	-	1165	6	NNC	ENSMUSG00000003038.16	novel	1265	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1109.59044696681	8331	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCTGATCTTTCCCA	NA	False	NA	NA	False	AATAAA	-25	NA	133695219	133692048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_133692885_133693261_133693351_133693739_133693791_133694076_133694107_133694267_133694313_133695105
ENSMUSG00000003038.16_133692755_133695219_1	chr4	-	460	6	NNC	ENSMUSG00000003038.16	novel	1265	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	1124.41362496192	1623	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTTTTTTTTTTAAGCT	NA	False	NA	NA	False	TATAAA	-17	NA	133695219	133692754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694101_133694267_133694313_133695105
ENSMUSG00000003038.16_133692755_133695219_2	chr4	-	459	6	NNC	ENSMUSG00000003038.16	novel	1265	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1109.59044696681	2324	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTTTTTTTTTTAAGCT	NA	False	NA	NA	False	TATAAA	-17	NA	133695219	133692754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_133692885_133693261_133693351_133693739_133693791_133694076_133694107_133694267_133694313_133695105
ENSMUSG00000003038.16_133692755_133695220_1	chr4	-	467	6	FSM	ENSMUSG00000003038.16	ENSMUST00000102553.11	1265	6	92	706	0	0	multi-exon	FALSE	canonical	3	1307	junction_3	652.309558415328	6093	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTTTTTTTTTTAAGCT	NA	False	NA	NA	False	TATAAA	-17	NA	133695220	133692754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133695105
ENSMUSG00000003039.10_72973574_72974152_1	chr8	+	499	2	ISM	ENSMUSG00000003039.10	ENSMUST00000212117.2	3387	3	-34	3122	0	-3122	5prime_fragment	FALSE	canonical	3	987	junction_1	0	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTGTGTGTGTGTGGAT	NA	False	NA	NA	False	NA	NA	NA	72973573	72974152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_72973705_72973784
ENSMUSG00000003039.10_72973574_72976240_1	chr8	+	542	4	FSM	ENSMUSG00000003039.10	ENSMUST00000003123.10	2564	4	0	2022	0	-1034	multi-exon	FALSE	canonical	3	920	junction_3	34.4705993887867	1829	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTTTTGGTTTTGGGGT	NA	False	NA	11	True	ATTAAA	-18	NA	72973573	72976240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_72973705_72973784_72973927_72975771_72975826_72976025
ENSMUSG00000003039.10_72973574_72976867_1	chr8	+	1169	4	FSM	ENSMUSG00000003039.10	ENSMUST00000003123.10	2564	4	0	1395	0	-407	multi-exon	FALSE	canonical	3	920	junction_3	34.4705993887867	4850	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTGTGAATGTTGTCTG	NA	False	NA	15	True	AATAAA	-15	NA	72973573	72976867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_72973705_72973784_72973927_72975771_72975826_72976025
ENSMUSG00000003039.10_72973574_72977279_1	chr8	+	1581	4	FSM	ENSMUSG00000003039.10	ENSMUST00000003123.10	2564	4	0	983	0	5	multi-exon	FALSE	canonical	3	920	junction_3	34.4705993887867	5740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGTGCGTGAAACAGATA	NA	False	NA	23	True	AATATA	-19	NA	72973573	72977279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_72973705_72973784_72973927_72975771_72975826_72976025
ENSMUSG00000003051.14_135181317_135186195_1	chr1	-	1980	9	FSM	ENSMUSG00000003051.14	ENSMUST00000003135.14	2095	9	111	4	-19	0	multi-exon	FALSE	canonical	3	306	junction_7	111.074791807142	823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGCCTGAGCTCTCTGT	NA	False	NA	-10	True	AATAAA	-23	NA	135186195	135181316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135185025_135185352_135185521_135186086
ENSMUSG00000003051.14_135181317_135186306_1	chr1	-	2031	9	FSM	ENSMUSG00000003051.14	ENSMUST00000185752.2	1901	9	-130	0	0	0	multi-exon	FALSE	canonical	3	367	junction_7	94.095363860288	807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGCCTGAGCTCTCTGT	NA	False	NA	-10	True	AATAAA	-23	NA	135186306	135181316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135184965_135185352_135185521_135186086
ENSMUSG00000003099.12_16738565_16761755_1	chr7	-	2266	12	NIC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-21	0	intron_retention	FALSE	canonical	3	1050	junction_5	58.5383959607102	1723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCTCGACGTGTGTCCA	NA	False	NA	-3	True	AATAAA	-37	NA	16761755	16738564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
ENSMUSG00000003099.12_16738678_16761755_1	chr7	-	1873	13	FSM	ENSMUSG00000003099.12	ENSMUST00000003183.12	2072	13	86	113	-21	0	multi-exon	FALSE	canonical	3	1050	junction_5	57.0079794609686	1194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCCTCAGGGTGGGGCAA	NA	False	NA	-116	True	NA	NA	NA	16761755	16738677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
ENSMUSG00000003131.8_45878912_45896127_1	chr9	-	1896	6	FSM	ENSMUSG00000003131.8	ENSMUST00000172450.3	6873	6	222	4755	-2	1070	multi-exon	FALSE	canonical	3	321	junction_5	34.2169548615887	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTTTTCCATGGGAAAC	4134	False	NA	NA	False	NA	NA	NA	45896127	45878911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890028_45896002
ENSMUSG00000003131.8_45879503_45896127_1	chr9	-	1305	6	FSM	ENSMUSG00000003131.8	ENSMUST00000172450.3	6873	6	222	5346	-2	479	multi-exon	FALSE	canonical	3	321	junction_5	34.2169548615887	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGGAGATGCTATAGTTA	4134	False	NA	-21	True	ATTAAA	-18	NA	45896127	45879502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890028_45896002
ENSMUSG00000003131.8_45879503_45896127_2	chr9	-	1299	6	FSM	ENSMUSG00000003131.8	ENSMUST00000215060.2	714	6	-5	-580	-2	479	multi-exon	FALSE	canonical	3	7	junction_5	147.373539008874	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGGAGATGCTATAGTTA	4134	False	NA	-21	True	ATTAAA	-18	NA	45896127	45879502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890022_45896002
ENSMUSG00000003131.8_45879809_45896127_1	chr9	-	999	6	FSM	ENSMUSG00000003131.8	ENSMUST00000172450.3	6873	6	222	5652	-2	173	multi-exon	FALSE	canonical	3	321	junction_5	34.2169548615887	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGCCAAGGAAGATTCATT	4134	False	NA	NA	False	TATAAA	-24	NA	45896127	45879808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890028_45896002
ENSMUSG00000003134.11_39407010_39410574_1	chr1	-	544	5	NIC	ENSMUSG00000003134.11	novel	4451	20	NA	NA	940	3563	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	257793	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGCCCAAGTAGGAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	39410574	39407009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_39407016_39407229_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUSG00000003134.11_39407010_39410992_1	chr1	-	962	5	NIC	ENSMUSG00000003134.11	novel	454	2	NA	NA	522	3563	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	260022	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGCCCAAGTAGGAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	39410992	39407009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_39407016_39407229_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUSG00000003153.11_122704785_122719481_1	chr6	-	3719	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	223	17	0	0	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	3846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCATGTCACAAGCT	8913	False	NA	-21	True	AATAAA	-12	NA	122719481	122704784	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
ENSMUSG00000003153.11_122706100_122719481_1	chr6	-	2404	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	223	1332	0	790	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTCTTTGTAGTTAGTGA	8913	False	NA	NA	False	ACTAAA	-20	NA	122719481	122706099	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
ENSMUSG00000003161.16_8106558_8117759_1	chr5	+	828	8	FSM	ENSMUSG00000003161.16	ENSMUST00000148633.4	2251	8	31	1392	0	33	multi-exon	FALSE	canonical	3	434	junction_5	36.6795277382635	1408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTCTGTTATACCAGTCA	NA	False	NA	22	True	AATAAA	-28	NA	8106557	8117759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_8106640_8107537_8107622_8109352_8109423_8112383_8112428_8113259_8113408_8113636_8113751_8114557_8114617_8117532
ENSMUSG00000003161.16_8106558_8117860_1	chr5	+	929	8	FSM	ENSMUSG00000003161.16	ENSMUST00000148633.4	2251	8	31	1291	0	134	multi-exon	FALSE	canonical	3	434	junction_5	36.6795277382635	1714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACATATTTTCTTGTGA	NA	False	NA	5	True	TATAAA	-22	NA	8106557	8117860	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_8106640_8107537_8107622_8109352_8109423_8112383_8112428_8113259_8113408_8113636_8113751_8114557_8114617_8117532
ENSMUSG00000003166.21_17658219_17658698_1	chr16	-	454	2	NNC	ENSMUSG00000003166.21	novel	4003	10	NA	NA	4343	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTCAGTTCTTGCTGT	4761	False	NA	-2	True	AATAAA	-18	NA	17658698	17658218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_17658451_17658476
ENSMUSG00000003166.21_17667175_17709521_1	chr16	-	1467	7	ISM	ENSMUSG00000003166.21	ENSMUST00000117945.8	4003	10	3	8956	0	0	5prime_fragment	FALSE	canonical	3	236	junction_4	83.6932228770977	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTTACGTGTGCATTTG	NA	False	NA	69	True	NA	NA	NA	17709521	17667174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_17667659_17674615_17674793_17675121_17675199_17676223_17676435_17677267_17677391_17690426_17690550_17709249
ENSMUSG00000003184.16_44647072_44651814_1	chr7	+	1573	8	FSM	ENSMUSG00000003184.16	ENSMUST00000003284.16	2031	8	0	458	0	0	multi-exon	TRUE	canonical	3	81	junction_5	29.0601066054199	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCTGTCGACTGCGTC	NA	False	NA	5	True	AATAAA	-20	NA	44647071	44651814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650447_44651096_44651213_44651587
ENSMUSG00000003184.16_44647072_44651814_2	chr7	+	1572	8	NNC	ENSMUSG00000003184.16	novel	2031	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	57.1135639202586	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCTGTCGACTGCGTC	NA	False	NA	5	True	AATAAA	-20	NA	44647071	44651814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_44647337_44648133_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650447_44651096_44651213_44651587
ENSMUSG00000003190.13_44640646_44647003_1	chr7	-	695	5	NIC	ENSMUSG00000003190.13	novel	1075	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	66.4115953730973	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-21	NA	44647003	44640645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_44640879_44643786_44643874_44645967_44646111_44646301_44646417_44646886
ENSMUSG00000003190.13_44640646_44647003_2	chr7	-	983	6	NIC	ENSMUSG00000003190.13	novel	1075	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	59.7943141109587	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-21	NA	44647003	44640645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_44640879_44642167_44642456_44643786_44643874_44645967_44646111_44646301_44646417_44646886
ENSMUSG00000003190.13_44647072_44651814_1	chr7	-	1367	8	Genic_Genomic	ENSMUSG00000003190.13	novel	1596	8	NA	NA	-3678	-1105	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGCATGCTGGGAACGCC	NA	False	NA	NA	False	NA	NA	NA	44651814	44647071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650241_44651096_44651213_44651587
ENSMUSG00000003198.11_56199468_56205932_1	chr17	+	2233	5	NNC	ENSMUSG00000003198.11	novel	705	4	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	13.1624465810882	138	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATATTTATGTGTCTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	56199467	56205932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_56199633_56199757_56199861_56202820_56202948_56203140_56203202_56204155
ENSMUSG00000003199.17_56316201_56323662_1	chr17	+	1316	12	NIC	ENSMUSG00000003199.17	novel	1701	13	NA	NA	0	9	combination_of_known_splicesites	FALSE	canonical	3	22	junction_1	267.709507050626	1212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACAAGCCTGTGGCTGGGG	NA	False	NA	18	True	AATAAA	-18	NA	56316200	56323662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_56316257_56317276_56317514_56317987_56318112_56318617_56318700_56318865_56318963_56319270_56319344_56319415_56319493_56321940_56322110_56322207_56322279_56322470_56322561_56322903_56322997_56323515
ENSMUSG00000003199.17_56323750_56343569_1	chr17	+	2007	10	NIC	ENSMUSG00000003199.17	novel	1701	13	NA	NA	4807	19779	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCAGCTCTGCGCCCCCGCC	NA	False	NA	NA	False	NA	NA	NA	56323749	56343569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_56324737_56324843_56324901_56324982_56325108_56325574_56325679_56325803_56325963_56326039_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
ENSMUSG00000003200.11_56316562_56323790_1	chr17	-	1413	12	NIC	ENSMUSG00000003200.11	novel	2073	10	NA	NA	19778	7188	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCGGGCTCCAGCAGCTC	NA	False	NA	NA	False	NA	NA	NA	56323790	56316561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_56316587_56317276_56317514_56317987_56318112_56318617_56318700_56318865_56318963_56319270_56319344_56319415_56319493_56321940_56322110_56322207_56322279_56322470_56322561_56322903_56322997_56323515
ENSMUSG00000003200.11_56323750_56343569_1	chr17	-	2084	9	NIC	ENSMUSG00000003200.11	novel	2073	10	NA	NA	-1	0	intron_retention	FALSE	canonical	3	585	junction_1	56.6192050014834	767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTCCCATCTTCATT	NA	False	NA	-1	True	ATTAAA	-17	NA	56343569	56323749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_56324737_56324843_56324901_56324982_56325108_56325574_56325679_56325803_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
ENSMUSG00000003200.11_56323750_56343569_2	chr17	-	2000	10	NNC	ENSMUSG00000003200.11	novel	2073	10	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	216.547716635957	765	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTCCCATCTTCATT	NA	False	NA	-1	True	ATTAAA	-17	NA	56343569	56323749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_56324737_56324843_56324901_56324982_56325108_56325574_56325679_56325803_56325963_56326039_56326174_56326315_56326453_56326925_56326999_56327122_56327192_56343414
ENSMUSG00000003208.10_56266174_56269763_1	chr17	+	934	3	ISM	ENSMUSG00000003208.10	ENSMUST00000086869.6	1660	8	0	5522	0	35	5prime_fragment	FALSE	canonical	3	151	junction_1	1.5	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGCCGGGCAGT	344	False	NA	NA	False	NA	NA	NA	56266173	56269763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_56266262_56267712_56267814_56269018
ENSMUSG00000003208.10_56266174_56274951_1	chr17	+	1326	8	FSM	ENSMUSG00000003208.10	ENSMUST00000086869.6	1660	8	0	334	0	-330	multi-exon	FALSE	canonical	3	126	junction_5	8.99205998963212	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTCGTGCTGTTTAAAC	344	False	NA	13	True	AATACA	-29	NA	56266173	56274951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_56266262_56267712_56267814_56269018_56269164_56271129_56271265_56271485_56271668_56272168_56272290_56273507_56273638_56274527
ENSMUSG00000003226.8_58282742_58291391_1	chr10	+	816	5	ISM	ENSMUSG00000003226.8	ENSMUST00000219332.2	2609	6	0	3430	0	-3430	5prime_fragment	FALSE	canonical	3	167	junction_4	13.9283882771841	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTGTGGATCTTTCTGT	NA	False	NA	NA	False	AATAAA	-14	NA	58282741	58291391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_58282874_58287805_58287874_58289133_58289246_58290394_58290548_58291040
ENSMUSG00000003234.17_20367394_20379568_1	chr16	+	2462	21	FSM	ENSMUSG00000003234.17	ENSMUST00000003319.6	3090	21	67	561	0	0	multi-exon	FALSE	canonical	3	293	junction_13	17.6705970470723	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTTGCCTCTCTGCTC	NA	False	NA	4	True	ATTAAA	-13	NA	20367393	20379568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_20367496_20367715_20367864_20367984_20368065_20368493_20368541_20368753_20368852_20368951_20369075_20369170_20369438_20370223_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371008_20371210_20371303_20371381_20377309_20377355_20377446_20377580_20378040_20378130_20378390_20378483_20378664_20378798_20378932_20379021_20379106
ENSMUSG00000003269.18_45457033_45460033_1	chr7	-	699	6	ISM	ENSMUSG00000003269.18	ENSMUST00000209245.2	1512	12	3693	-30	279	0	3prime_fragment	FALSE	canonical	1	1	junction_4	186.030535127973	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAATTATTTAATCCCTT	6864	False	NA	NA	False	NA	NA	NA	45460033	45457032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_45457273_45457356_45457512_45457599_45457672_45457796_45457874_45459546_45459663_45459994
ENSMUSG00000003271.18_45379407_45399296_1	chr7	-	1149	7	NNC	ENSMUSG00000003271.18	novel	1193	7	NA	NA	-7126	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	2.80871659105879	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTCCTCTGTGCTGACT	7710	False	NA	NA	False	AATAAA	-17	NA	45399296	45379406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_45379624_45380661_45380843_45383042_45383138_45383410_45383538_45384558_45384768_45391477_45391621_45399119
ENSMUSG00000003273.15_45350440_45354033_2	chr7	+	1148	7	ISM	ENSMUSG00000003273.15	ENSMUST00000003360.10	1585	9	1173	73	0	0	3prime_fragment	FALSE	canonical	3	16	junction_2	3.86221007541882	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTTTCTCGGTGGTTTA	NA	False	NA	3	True	ATTAAA	-14	NA	45350439	45354033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_45350791_45351857_45352044_45352256_45352353_45352485_45352559_45352882_45353038_45353136_45353303_45353912
ENSMUSG00000003299.11_20914214_20920127_1	chr9	+	1182	8	NIC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	832	junction_5	84.7158515875517	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAAATGAGCTGGTCAC	NA	False	NA	18	True	AATAAA	-18	NA	20914213	20920127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919196_20919789
ENSMUSG00000003299.11_20914214_20920127_2	chr9	+	1150	9	NIC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	334.184455054391	2590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAAATGAGCTGGTCAC	NA	False	NA	18	True	AATAAA	-18	NA	20914213	20920127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917532_20918122_20918241_20918729_20918837_20918926_20919037_20919118_20919196_20919789
ENSMUSG00000003299.11_20914214_20920127_3	chr9	+	1082	9	NIC	ENSMUSG00000003299.11	novel	815	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_5	334.687704248304	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAAATGAGCTGGTCAC	NA	False	NA	18	True	AATAAA	-18	NA	20914213	20920127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918153_20918659_20918837_20918926_20919037_20919118_20919196_20919789
ENSMUSG00000003299.11_20914214_20920127_4	chr9	+	1092	9	NNC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	333.559870937737	3392	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAAATGAGCTGGTCAC	NA	False	NA	18	True	AATAAA	-18	NA	20914213	20920127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919029_20919118_20919196_20919789
ENSMUSG00000003299.11_20914214_20920127_5	chr9	+	1105	9	NNC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	336.226393223376	3625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAAATGAGCTGGTCAC	NA	False	NA	18	True	AATAAA	-18	NA	20914213	20920127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918842_20918926_20919037_20919118_20919196_20919789
ENSMUSG00000003299.11_20914214_20920127_6	chr9	+	1083	8	NNC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	353.495374215614	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAAATGAGCTGGTCAC	NA	False	NA	18	True	AATAAA	-18	NA	20914213	20920127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_20914294_20914379_20914447_20914549_20914736_20918122_20918241_20918729_20918837_20918926_20919037_20919118_20919196_20919789
ENSMUSG00000003299.11_20914214_20920127_7	chr9	+	1206	9	NIC	ENSMUSG00000003299.11	novel	815	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_5	335.339916167163	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAAATGAGCTGGTCAC	NA	False	NA	18	True	AATAAA	-18	NA	20914213	20920127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918623_20918837_20918926_20919037_20919118_20919196_20919789
ENSMUSG00000003308.16_21147419_21150116_1	chr9	-	908	3	NIC	ENSMUSG00000003308.16	novel	317	2	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	25	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTCTGAAGAAGTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21150116	21147418	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_21147613_21148366_21149053_21150088
ENSMUSG00000003308.16_21148091_21150116_1	chr9	-	870	3	NNC	ENSMUSG00000003308.16	novel	3151	6	NA	NA	-7	-672	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	25.5	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACTTTTGTTTTTAAAT	NA	False	NA	NA	False	AATAGA	-30	NA	21150116	21148090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_21148247_21148366_21149053_21150088
ENSMUSG00000003316.15_111884157_111886537_1	chr8	-	644	2	ISM	ENSMUSG00000003316.15	ENSMUST00000168741.8	2145	15	17871	0	17871	0	3prime_fragment	FALSE	canonical	3	485	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAAGGAAAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	111886537	111884156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_111884694_111886430
ENSMUSG00000003345.17_80475679_80476583_1	chr10	+	758	2	FSM	ENSMUSG00000003345.17	ENSMUST00000220431.2	473	2	206	-491	206	0	multi-exon	FALSE	canonical	3	678	junction_1	0	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGCCTGGGCTTTACCA	NA	False	NA	17	True	GGGGCT	-44	NA	80475678	80476583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80475709_80475855
ENSMUSG00000003346.15_80419488_80422864_1	chr10	-	1301	4	ISM	ENSMUSG00000003346.15	ENSMUST00000003436.12	1468	5	3311	0	-406	0	3prime_fragment	TRUE	canonical	3	372	junction_3	33.2565782966318	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTGCTTGGCTCCTTTGT	NA	False	NA	-5	True	ATTAAA	-15	NA	80422864	80419487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_80419898_80419976_80420157_80421441_80421637_80422348
ENSMUSG00000003355.8_98622247_98625470_1	chr15	-	721	4	ISM	ENSMUSG00000003355.8	ENSMUST00000003445.8	734	6	609	-4	551	0	3prime_fragment	FALSE	canonical	3	637	junction_3	34.4512538072113	1126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTATTTTTCACTCGGT	NA	False	NA	NA	False	AATAAA	-19	NA	98625470	98622246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_98622484_98624364_98624436_98624780_98624815_98625091
ENSMUSG00000003355.8_98622247_98625470_2	chr15	-	602	5	NNC	ENSMUSG00000003355.8	novel	734	6	NA	NA	551	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	286.193116618831	666	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTATTTTTCACTCGGT	NA	False	NA	NA	False	AATAAA	-19	NA	98625470	98622246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_98622484_98624364_98624436_98624780_98624815_98625091_98625180_98625298
ENSMUSG00000003363.16_27231425_27252467_1	chr7	-	2112	14	FSM	ENSMUSG00000003363.16	ENSMUST00000117095.8	2282	14	170	0	-26	0	multi-exon	FALSE	canonical	3	277	junction_13	66.1410542194063	977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTATGAGATGGTATGTT	NA	False	NA	1	True	AGTAAA	-31	NA	27252467	27231424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27244612_27244688_27252422
ENSMUSG00000003363.16_27231425_27252467_2	chr7	-	2037	13	NIC	ENSMUSG00000003363.16	novel	2282	14	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_12	130.304211367093	932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTATGAGATGGTATGTT	NA	False	NA	1	True	AGTAAA	-31	NA	27252467	27231424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27252422
ENSMUSG00000003379.8_24596806_24601283_1	chr7	+	1118	5	FSM	ENSMUSG00000003379.8	ENSMUST00000003469.8	1457	5	0	339	0	-339	multi-exon	FALSE	canonical	0	0	junction_2	1.4790199457749	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTGGCAGGAGTCATGG	2898	False	NA	NA	False	AATAAA	-15	NA	24596805	24601283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_24597014_24598519_24598814_24599011_24599131_24600657_24600727_24600855
ENSMUSG00000003380.12_24669186_24672100_1	chr7	-	767	5	NIC	ENSMUSG00000003380.12	novel	899	5	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	2	23	junction_1	304.184462949704	3772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGGCCAATACTTTCCT	4574	False	NA	-14	True	AATAAA	-15	NA	24672100	24669185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_24669391_24669511_24669614_24671185_24671284_24671526_24671740_24671951
ENSMUSG00000003411.11_108736260_108798385_1	chr4	+	1191	5	FSM	ENSMUSG00000003411.11	ENSMUST00000106650.9	3327	5	0	2136	0	0	multi-exon	FALSE	canonical	3	36	junction_4	5.5	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGCTTGTTTCCTATC	NA	False	NA	7	True	ATTAAA	-18	NA	108736259	108798385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_108736416_108747504_108747733_108781102_108781222_108786598_108786724_108797822
ENSMUSG00000003420.9_44752259_44755933_1	chr7	-	717	3	NNC	ENSMUSG00000003420.9	novel	595	2	NA	NA	-2658	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_2	41.5	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTCGTCTCTGTGTCCGT	NA	False	NA	NA	False	AATACA	-13	NA	44755933	44752258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_44752698_44753063_44753189_44755780
ENSMUSG00000003421.14_44711913_44726840_1	chr7	+	987	9	FSM	ENSMUSG00000003421.14	ENSMUST00000003513.11	1814	9	33	794	0	0	multi-exon	FALSE	canonical	3	417	junction_1	63.7582102556212	685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGCCTGGCGCCTCATTG	3118	False	NA	27	True	AATAAA	-18	NA	44711912	44726840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
ENSMUSG00000003421.14_44711913_44726840_2	chr7	+	982	9	NNC	ENSMUSG00000003421.14	novel	1814	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	169.469346416985	347	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGCCTGGCGCCTCATTG	3118	False	NA	27	True	AATAAA	-18	NA	44711912	44726840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_44711956_44722913_44722989_44723405_44723512_44724034_44724112_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
ENSMUSG00000003421.14_44711913_44727634_1	chr7	+	1706	9	FSM	ENSMUSG00000003421.14	ENSMUST00000107829.9	972	9	60	-794	0	0	multi-exon	FALSE	canonical	3	37	junction_6	164.802912595621	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCTTTGTTGTTTTATT	3118	False	NA	25	True	NA	NA	NA	44711912	44727634	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44726050_44726164_44726244_44726354_44726735
ENSMUSG00000003423.16_44791259_44803960_1	chr7	+	2570	17	NIC	ENSMUSG00000003423.16	novel	1185	10	NA	NA	-12468	-2253	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGTCCGAAGGGCGGCAC	NA	False	NA	NA	False	NA	NA	NA	44791258	44803960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_44791527_44792203_44792327_44792536_44792723_44793936_44794139_44794290_44794459_44794899_44795031_44795108_44795215_44795326_44795464_44795617_44795714_44796046_44796233_44796585_44796739_44796822_44797005_44797148_44797227_44797307_44797487_44798037_44798165_44799087_44799191_44803815
ENSMUSG00000003423.16_44803773_44809489_1	chr7	+	1063	10	NNC	ENSMUSG00000003423.16	novel	1077	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	119.945152074491	1427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCCAGACAATGATGCATG	NA	False	NA	21	True	AATAAA	-21	NA	44803772	44809489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_44803877_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUSG00000003423.16_44805240_44809483_1	chr7	+	983	10	NIC	ENSMUSG00000003423.16	novel	548	7	NA	NA	-127	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	120.254360050316	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCAGCTCCAGACAATGA	NA	False	NA	15	True	AATAAA	-15	NA	44805239	44809483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_44805270_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUSG00000003423.16_44805248_44809489_1	chr7	+	1118	10	NNC	ENSMUSG00000003423.16	novel	1072	10	NA	NA	-119	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	119.017687242457	245	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCCAGACAATGATGCATG	NA	False	NA	21	True	AATAAA	-21	NA	44805247	44809489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_44805407_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUSG00000003423.16_44805253_44809483_1	chr7	+	1096	10	NNC	ENSMUSG00000003423.16	novel	1072	10	NA	NA	-114	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	117.781446483742	213	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCAGCTCCAGACAATGA	NA	False	NA	15	True	AATAAA	-15	NA	44805252	44809483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_44805396_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUSG00000003429.12_44771857_44773759_1	chr7	-	503	5	FSM	ENSMUSG00000003429.12	ENSMUST00000003521.10	661	5	104	54	0	0	multi-exon	FALSE	canonical	3	18027	junction_3	5229.01092463957	12357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTCTGGCCAATGCCCTA	NA	False	NA	-55	True	NA	NA	NA	44773759	44771856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44771983_44772252_44772383_44772586_44772663_44772842_44772975_44773720
ENSMUSG00000003435.10_28014316_28038171_1	chr7	-	3531	29	NIC	ENSMUSG00000003435.10	novel	3640	31	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_25	152.559502443192	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACGAAGAGTTTTCTT	NA	False	NA	-8	True	AATAAA	-21	NA	28038171	28014315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28030004_28030071_28030794_28030955_28037776_28037861_28038119
ENSMUSG00000003435.10_28030855_28038186_1	chr7	-	251	3	ISM	ENSMUSG00000003435.10	ENSMUST00000003527.10	3513	30	-42	16536	-15	-5387	5prime_fragment	FALSE	canonical	3	628	junction_2	50	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGATGATAGGCCCCCC	NA	False	NA	NA	False	NA	NA	NA	28038186	28030854	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_28030955_28037776_28037861_28038119
ENSMUSG00000003436.12_27993137_27994049_1	chr7	-	581	3	ISM	ENSMUSG00000003436.12	ENSMUST00000108315.4	2618	9	7614	159	-143	-113	3prime_fragment	FALSE	canonical	3	14	junction_2	1	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCAGGCTGAGAACTTTTT	NA	False	NA	NA	False	TATAAA	-22	NA	27994049	27993136	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_27993352_27993465_27993551_27993768
ENSMUSG00000003437.15_28092387_28098808_1	chr7	+	1985	13	NNC	ENSMUSG00000003437.15	novel	2003	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	56.1758152786608	1225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATCTCCTAAAGTCTCT	580	False	NA	15	True	AATAAA	-16	NA	28092386	28098808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_28092680_28094439_28094561_28094842_28094965_28095053_28095121_28095195_28095298_28095376_28095483_28095558_28095628_28095708_28095813_28096034_28096152_28096245_28096375_28097872_28097979_28098083_28098175_28098250
ENSMUSG00000003438.18_28004941_28011471_1	chr7	-	1476	10	NNC	ENSMUSG00000003438.18	novel	1515	11	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	755.088188782943	4399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCGTGTGTGGCTCTGT	2682	False	NA	-1	True	NA	NA	NA	28011471	28004940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009711_28009753_28010293_28010445_28011349
ENSMUSG00000003438.18_28005249_28011364_1	chr7	-	1074	11	FSM	ENSMUSG00000003438.18	ENSMUST00000081946.5	1515	11	133	308	0	0	multi-exon	FALSE	canonical	3	2125	junction_9	150.487341660354	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTGTGTCCAGAGTCC	2789	False	NA	-2	True	AATAAA	-19	NA	28011364	28005248	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009503_28009526_28009720_28009753_28010293_28010445_28011349
ENSMUSG00000003438.18_28005249_28011471_2	chr7	-	1181	11	FSM	ENSMUSG00000003438.18	ENSMUST00000081946.5	1515	11	26	308	-9	0	multi-exon	FALSE	canonical	3	2125	junction_9	150.487341660354	3072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTGTGTCCAGAGTCC	2682	False	NA	-2	True	AATAAA	-19	NA	28011471	28005248	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009503_28009526_28009720_28009753_28010293_28010445_28011349
ENSMUSG00000003444.9_28086161_28092133_1	chr7	-	796	5	NNC	ENSMUSG00000003444.9	novel	1281	4	NA	NA	0	-590	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_2	249.415692168717	3685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGTGGTTCCTGTTGCTGA	NA	False	NA	-19	True	AATGAA	-19	NA	28092133	28086160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_28086450_28086623_28086729_28090236_28090322_28090514_28090574_28091875
ENSMUSG00000003444.9_28086161_28092133_2	chr7	-	691	4	FSM	ENSMUSG00000003444.9	ENSMUST00000003536.9	1281	4	0	590	0	-590	multi-exon	FALSE	canonical	3	529	junction_2	10.3387082795139	3710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGTGGTTCCTGTTGCTGA	NA	False	NA	-19	True	AATGAA	-19	NA	28092133	28086160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28086450_28090236_28090322_28090514_28090574_28091875
ENSMUSG00000003458.13_171893580_171910260_1	chr1	-	2799	17	FSM	ENSMUSG00000003458.13	ENSMUST00000003550.11	2901	17	102	0	102	0	multi-exon	FALSE	canonical	3	465	junction_8	31.8580224394108	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTGTTTGGTATTCTTC	9098	False	NA	50	True	ATTAAA	-21	NA	171910260	171893579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171908778_171908884_171910167
ENSMUSG00000003464.14_171954340_171962850_1	chr1	+	1847	8	NNC	ENSMUSG00000003464.14	novel	1917	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_7	148.836302352481	747	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGTTATTTTTCATC	NA	False	NA	24	True	AATAAA	-14	NA	171954339	171962850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961825
ENSMUSG00000003464.14_171954340_171963336_1	chr1	+	2385	8	FSM	ENSMUSG00000003464.14	ENSMUST00000075895.9	1917	8	18	-486	0	486	multi-exon	FALSE	canonical	3	409	junction_6	20.1666526114529	910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGAGTCACTTCGAGT	NA	False	NA	14	True	AAGAAA	-11	NA	171954339	171963336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
ENSMUSG00000003526.13_17889589_17907007_1	chr16	-	2237	14	FSM	ENSMUSG00000003526.13	ENSMUST00000003620.13	2386	14	149	0	0	0	multi-exon	FALSE	canonical	3	102	junction_5	13.1900087703135	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTTTCTCTTGGTACCT	8092	False	NA	0	True	AATAAA	-20	NA	17907007	17889588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_17890228_17890313_17890403_17891418_17891518_17894105_17894282_17895307_17895455_17895654_17895748_17897050_17897133_17897775_17897856_17898029_17898147_17898326_17898392_17898789_17898940_17899394_17899430_17902410_17902620_17906751
ENSMUSG00000003526.13_17902068_17907007_1	chr16	-	808	2	FSM	ENSMUSG00000003526.13	ENSMUST00000132241.2	687	2	-121	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATTGTCTTTTCAATTTG	8092	False	NA	NA	False	NA	NA	NA	17907007	17902067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_17902620_17906751
ENSMUSG00000003531.16_17884307_17888761_1	chr16	+	580	5	FSM	ENSMUSG00000003531.16	ENSMUST00000151266.8	1086	5	40	466	0	-445	multi-exon	FALSE	canonical	3	350	junction_3	38.8546972707291	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATTGGAACTCATCAGGA	NA	False	NA	NA	False	NA	NA	NA	17884306	17888761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_17884464_17884559_17884721_17887287_17887389_17887954_17888096_17888741
ENSMUSG00000003531.16_17884307_17889207_1	chr16	+	1053	5	NNC	ENSMUSG00000003531.16	novel	1050	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	187.78894403026	3078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTCTGTGCTACCTAG	NA	False	NA	10	True	AATAAA	-16	NA	17884306	17889207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_17884464_17884559_17884721_17887287_17887389_17887927_17888096_17888741
ENSMUSG00000003546.11_46941550_46946698_1	chr17	-	921	6	ISM	ENSMUSG00000003546.11	ENSMUST00000003642.7	2322	16	9372	-7	9372	0	3prime_fragment	FALSE	canonical	3	105	junction_5	12.4354332453679	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCGGAGTCTTCATTG	NA	False	NA	-2	True	AATAAA	-18	NA	46946698	46941549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657
ENSMUSG00000003549.10_19079026_19090449_1	chr7	+	980	9	NIC	ENSMUSG00000003549.10	novel	1375	10	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	2	4	junction_7	122.429507778966	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTGGCTCTGCGTGTTT	1034	False	NA	15	True	AATAAA	-20	NA	19079025	19090449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_19079122_19079530_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088250_19088351_19089217_19089287_19090343
ENSMUSG00000003549.10_19079026_19090449_2	chr7	+	1049	10	NNC	ENSMUSG00000003549.10	novel	1375	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	117.810372848138	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTGGCTCTGCGTGTTT	1034	False	NA	15	True	AATAAA	-20	NA	19079025	19090449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_19079126_19079537_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088250_19088351_19089025_19089098_19089217_19089287_19090343
ENSMUSG00000003549.10_19079026_19090449_3	chr7	+	1052	10	FSM	ENSMUSG00000003549.10	ENSMUST00000003645.9	1375	10	323	0	0	0	multi-exon	FALSE	canonical	3	315	junction_9	39.5851948880006	926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTGGCTCTGCGTGTTT	1034	False	NA	15	True	AATAAA	-20	NA	19079025	19090449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_19079122_19079530_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088250_19088351_19089025_19089098_19089217_19089287_19090343
ENSMUSG00000003573.16_70735684_70739191_1	chr8	+	684	5	FSM	ENSMUSG00000003573.16	ENSMUST00000087467.12	880	5	207	-11	0	11	multi-exon	FALSE	canonical	3	53	junction_4	81.1202810646018	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGCTTTGGTGTAAATG	NA	False	NA	NA	False	ATTAAA	-20	NA	70735683	70739191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70738945
ENSMUSG00000003573.16_70735684_70744997_1	chr8	+	1767	9	ISM	ENSMUSG00000003573.16	ENSMUST00000110124.9	2445	10	35	2014	0	609	5prime_fragment	FALSE	canonical	3	150	junction_8	37.4814537471534	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTTTTTGTTTTTCATAC	NA	False	NA	72	True	NA	NA	NA	70735683	70744997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70742043_70742152_70742701_70742824_70743656_70743814_70743967_70744079_70744166
ENSMUSG00000003573.16_70746101_70755121_1	chr8	+	1463	13	NNC	ENSMUSG00000003573.16	novel	2608	10	NA	NA	2375	8110	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	962	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCGGCGCGTGAATGCT	2989	False	NA	NA	False	NA	NA	NA	70746100	70755121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_70746338_70746477_70746550_70746648_70746738_70747336_70747412_70748016_70748115_70748224_70748302_70749032_70749109_70749552_70749694_70749780_70749969_70750525_70750648_70750730_70750817_70753628_70753682_70754972
ENSMUSG00000003575.14_70856963_70892261_1	chr8	-	699	5	NNC	ENSMUSG00000003575.14	novel	870	4	NA	NA	-32	536	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	29.1247317584214	140	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATATAGTAACTGCACACA	5181	False	NA	-15	True	NA	NA	NA	70892261	70856962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70857166_70857908_70857971_70858727_70858866_70861544_70861662_70892082
ENSMUSG00000003604.15_112323501_112461598_1	chr2	+	1223	6	FSM	ENSMUSG00000003604.15	ENSMUST00000003705.12	4735	6	192	3320	192	342	multi-exon	FALSE	canonical	3	555	junction_4	26.4227174983952	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTTTCCTTTCTTCAC	NA	False	NA	4	True	AATAAA	-15	NA	112323500	112461598	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_112323567_112344794_112344973_112455499_112455571_112458093_112458190_112460084_112460422_112461123
ENSMUSG00000003623.5_9016211_9018741_1	chr5	-	857	2	ISM	ENSMUSG00000003623.5	ENSMUST00000003720.5	2996	18	28583	178	13403	-178	3prime_fragment	FALSE	canonical	3	224	junction_1	0	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTAGAGCTAGCAGCTTT	NA	False	NA	0	True	ATTAAA	-21	NA	9018741	9016210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_9016973_9018646
ENSMUSG00000003644.18_133574605_133592415_1	chr4	-	2130	12	ISM	ENSMUSG00000003644.18	ENSMUST00000157067.9	2637	20	7209	-531	-4062	0	3prime_fragment	FALSE	canonical	3	996	junction_6	94.9394761531335	504	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGCGCCCGCTCTTCCTT	9483	False	NA	-9	True	AATAAA	-14	NA	133592415	133574604	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_133575486_133575832_133575971_133578011_133578130_133578248_133578326_133578475_133578638_133587363_133587523_133587821_133587912_133588127_133588254_133588726_133588858_133590958_133591062_133591316_133591382_133592335
ENSMUSG00000003657.10_110869170_110879709_1	chr8	-	1155	9	NNC	ENSMUSG00000003657.10	novel	1431	11	NA	NA	15129	0	at_least_one_novel_splicesite	FALSE	canonical	3	87	junction_8	57.2319840648566	460	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCACCCGTTTCTTGTCG	NA	False	NA	-12	True	AATAAA	-22	NA	110879709	110869169	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_110869833_110872283_110872356_110873932_110873987_110874246_110874287_110874674_110874731_110875145_110875224_110875987_110876045_110879261_110879343_110879655
ENSMUSG00000003660.11_127080502_127082371_1	chr2	+	637	4	ISM	ENSMUSG00000003660.11	ENSMUST00000103220.4	6745	45	30183	0	490	0	3prime_fragment	FALSE	canonical	3	796	junction_2	87.0108550060789	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCCTTAACAGTGATAC	18	False	NA	15	True	AATAAA	-17	NA	127080501	127082371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_127080581_127080658_127080741_127081798_127081892_127081988
ENSMUSG00000003662.11_127084540_127089540_1	chr2	-	1197	7	FSM	ENSMUSG00000003662.11	ENSMUST00000003759.11	3075	7	196	1682	0	0	multi-exon	FALSE	canonical	3	164	junction_2	19.7793382655291	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGATTTAGGGCATGGTG	NA	False	NA	-13	True	ATTAAA	-6	NA	127089540	127084539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_127084958_127086832_127086921_127087642_127087845_127088332_127088422_127088521_127088634_127088929_127089079_127089401
ENSMUSG00000003662.11_127084540_127089736_1	chr2	-	1393	7	FSM	ENSMUSG00000003662.11	ENSMUST00000003759.11	3075	7	0	1682	0	0	multi-exon	FALSE	canonical	3	164	junction_2	19.7793382655291	1509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGATTTAGGGCATGGTG	NA	False	NA	-13	True	ATTAAA	-6	NA	127089736	127084539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_127084958_127086832_127086921_127087642_127087845_127088332_127088422_127088521_127088634_127088929_127089079_127089401
ENSMUSG00000003721.15_121232082_121255494_1	chr1	-	2438	6	FSM	ENSMUSG00000003721.15	ENSMUST00000003818.14	2697	6	259	0	0	0	multi-exon	FALSE	canonical	3	166	junction_4	17.805617091244	943	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGTCCTTTTTATTC	NA	False	NA	-1	True	ATTAAA	-17	NA	121255494	121232081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255419
ENSMUSG00000003721.15_121232082_121255494_2	chr1	-	1190	7	NNC	ENSMUSG00000003721.15	novel	2697	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	68.4438131284016	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGTCCTTTTTATTC	NA	False	NA	-1	True	ATTAAA	-17	NA	121255494	121232081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_121232336_121233583_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255419
ENSMUSG00000003721.15_121233251_121255494_1	chr1	-	1269	6	FSM	ENSMUSG00000003721.15	ENSMUST00000003818.14	2697	6	259	1169	0	0	multi-exon	FALSE	canonical	3	166	junction_4	17.805617091244	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAGAAAGCAAATTATAG	NA	False	NA	NA	False	NA	NA	NA	121255494	121233250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255419
ENSMUSG00000003721.15_121233424_121255494_2	chr1	-	1096	6	FSM	ENSMUSG00000003721.15	ENSMUST00000003818.14	2697	6	259	1342	0	0	multi-exon	FALSE	canonical	3	166	junction_4	17.805617091244	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCGCTACATGAAAGATATG	NA	False	NA	NA	False	AATAAA	-14	NA	121255494	121233423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255419
ENSMUSG00000003731.14_129541277_129566560_1	chr4	-	2206	14	FSM	ENSMUSG00000003731.14	ENSMUST00000102590.11	5710	14	0	3504	0	0	multi-exon	TRUE	canonical	3	106	junction_4	15.2943505832485	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTAATCTTGTATGCTT	8834	False	NA	-29	True	NA	NA	NA	129566560	129541276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_129541973_129542990_129543170_129544476_129544605_129545380_129545507_129547230_129547310_129547634_129547799_129548080_129548181_129548657_129548747_129549222_129549355_129550100_129550196_129551181_129551282_129551560_129551654_129555098_129555233_129566469
ENSMUSG00000003778.15_34732883_34735762_1	chr18	-	495	3	ISM	ENSMUSG00000003778.15	ENSMUST00000152612.8	4335	20	21844	0	21844	0	3prime_fragment	FALSE	canonical	3	523	junction_1	56.5	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTCTGGCCTTTGGTGT	NA	False	NA	-5	True	NA	NA	NA	34735762	34732882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_-_34733295_34735255_34735301_34735724
ENSMUSG00000003779.17_34765842_34784788_1	chr18	+	3027	16	NIC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	3866	18458	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1960	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGCAAGAATACTTGCTC	3203	False	NA	NA	False	NA	NA	NA	34765841	34784788	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
ENSMUSG00000003808.19_85583618_85595886_1	chr8	+	1820	13	NNC	ENSMUSG00000003808.19	novel	1826	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	186.69945768534	1428	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTGTCATTCATTTCA	NA	False	NA	38	True	AATAAA	-38	NA	85583617	85595886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594011_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
ENSMUSG00000003812.14_85635360_85638098_1	chr8	+	1398	7	NNC	ENSMUSG00000003812.14	novel	1715	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	34.0864912962436	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGACTTGAATTTGTTT	NA	False	NA	18	True	NA	NA	NA	85635359	85638098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314_85637819_85637964
ENSMUSG00000003812.14_85640020_85640944_1	chr8	+	392	2	ISM	ENSMUSG00000003812.14	ENSMUST00000128400.2	4073	7	4670	206	0	-206	3prime_fragment	FALSE	canonical	3	74	junction_1	0	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCTGTTGGGGCTGGAG	NA	False	NA	NA	False	NA	NA	NA	85640019	85640944	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_85640158_85640690
ENSMUSG00000003812.14_85640020_85640944_2	chr8	+	483	2	NNC	ENSMUSG00000003812.14	novel	1118	3	NA	NA	0	-206	at_least_one_novel_splicesite	FALSE	canonical	3	98	junction_1	0	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCTGTTGGGGCTGGAG	NA	False	NA	NA	False	NA	NA	NA	85640019	85640944	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_85640158_85640599
ENSMUSG00000003812.14_85640020_85641150_1	chr8	+	598	2	ISM	ENSMUSG00000003812.14	ENSMUST00000128400.2	4073	7	4670	0	0	0	3prime_fragment	FALSE	canonical	3	74	junction_1	0	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTCTCTTTCATCTAG	NA	False	NA	NA	False	NA	NA	NA	85640019	85641150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_85640158_85640690
ENSMUSG00000003812.14_85640020_85641150_2	chr8	+	689	2	NNC	ENSMUSG00000003812.14	novel	1118	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	98	junction_1	0	1091	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTCTCTTTCATCTAG	NA	False	NA	NA	False	NA	NA	NA	85640019	85641150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_85640158_85640599
ENSMUSG00000003812.14_85640020_85649065_1	chr8	+	639	3	FSM	ENSMUSG00000003812.14	ENSMUST00000148573.2	1118	3	0	479	0	-479	multi-exon	FALSE	canonical	3	99	junction_1	1.5	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAATGTAAAGTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	85640019	85649065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85640158_85647022_85647134_85648675
ENSMUSG00000003812.14_85640020_85649547_1	chr8	+	1144	3	NNC	ENSMUSG00000003812.14	novel	1118	3	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	44.5	679	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATAGAGTGGGGGTGTTT	NA	False	NA	7	True	AATAAA	-19	NA	85640019	85649547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_85640158_85646999_85647134_85648675
ENSMUSG00000003813.16_85561540_85567281_1	chr8	-	1821	9	NNC	ENSMUSG00000003813.16	novel	1842	9	NA	NA	-11	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	473.016120232704	1759	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGCTTCTCACAGCTGT	NA	False	NA	-14	True	AATAAA	-37	NA	85567281	85561539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_85562304_85562383_85562541_85564088_85564223_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
ENSMUSG00000003813.16_85561540_85567281_2	chr8	-	1838	9	NNC	ENSMUSG00000003813.16	novel	1842	9	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_2	440.346738377838	1831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGCTTCTCACAGCTGT	NA	False	NA	-14	True	AATAAA	-37	NA	85567281	85561539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_85562304_85562383_85562549_85564076_85564220_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
ENSMUSG00000003813.16_85562107_85567281_1	chr8	-	1262	9	FSM	ENSMUSG00000003813.16	ENSMUST00000109761.9	1842	9	13	567	-11	142	multi-exon	FALSE	canonical	3	614	junction_3	246.139156525328	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATATATATATTCATGTTT	NA	False	NA	NA	False	NA	NA	NA	85567281	85562106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_85562304_85562383_85562549_85564088_85564223_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
ENSMUSG00000003813.16_85562249_85567281_1	chr8	-	1120	9	FSM	ENSMUSG00000003813.16	ENSMUST00000109761.9	1842	9	13	709	-11	0	multi-exon	FALSE	canonical	3	614	junction_3	246.139156525328	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATGAGAATTTGGCT	NA	False	NA	NA	False	NA	NA	NA	85567281	85562248	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_85562304_85562383_85562549_85564088_85564223_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
ENSMUSG00000003814.9_85568720_85573495_1	chr8	-	1875	9	FSM	ENSMUSG00000003814.9	ENSMUST00000003912.7	2184	9	68	241	-36	-241	multi-exon	FALSE	canonical	3	1093	junction_6	113.438791314964	7566	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTGTCTCCTTCTCT	NA	False	NA	-4	True	ATTAAA	-18	NA	85573495	85568719	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
ENSMUSG00000003824.13_85598822_85614075_1	chr8	+	1295	4	NIC	ENSMUSG00000003824.13	novel	929	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	1047	junction_1	431.92772029074	1545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGCTGGTCCTTT	NA	False	NA	81	True	NA	NA	NA	85598821	85614075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_85599462_85610059_85610214_85612563_85612753_85613763
ENSMUSG00000003824.13_85598822_85614075_2	chr8	+	668	4	NNC	ENSMUSG00000003824.13	novel	685	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	572.265866728239	2999	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGCTGGTCCTTT	NA	False	NA	81	True	NA	NA	NA	85598821	85614075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_85598883_85599348_85599462_85612563_85612746_85613763
ENSMUSG00000003824.13_85598822_85614075_3	chr8	+	664	4	NNC	ENSMUSG00000003824.13	novel	685	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	831.73085924608	2396	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGCTGGTCCTTT	NA	False	NA	81	True	NA	NA	NA	85598821	85614075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_85598883_85599348_85599451_85612563_85612753_85613763
ENSMUSG00000003824.13_85598822_85614075_4	chr8	+	822	5	NNC	ENSMUSG00000003824.13	novel	929	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	717.273483407828	1746	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGCTGGTCCTTT	NA	False	NA	81	True	NA	NA	NA	85598821	85614075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_85598883_85599348_85599462_85610059_85610214_85612570_85612753_85613763
ENSMUSG00000003824.13_85598822_85614075_5	chr8	+	1141	3	NIC	ENSMUSG00000003824.13	novel	685	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	832	junction_1	576	2308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGCTGGTCCTTT	NA	False	NA	81	True	NA	NA	NA	85598821	85614075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_85599462_85612563_85612753_85613763
ENSMUSG00000003824.13_85598822_85614075_6	chr8	+	836	5	NNC	ENSMUSG00000003824.13	novel	929	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	720.078120761907	1985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGCTGGTCCTTT	NA	False	NA	81	True	NA	NA	NA	85598821	85614075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_85598883_85599348_85599469_85610059_85610214_85612563_85612753_85613763
ENSMUSG00000003824.13_85598822_85626755_1	chr8	+	730	5	NNC	ENSMUSG00000003824.13	novel	685	4	NA	NA	0	11905	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_3	588.200380397701	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCACAGTGTCCTGTGAC	NA	False	NA	NA	False	NA	NA	NA	85598821	85626755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_85598883_85599348_85599462_85612563_85612753_85620169_85620291_85626509
ENSMUSG00000003824.13_85599067_85614075_1	chr8	+	1050	4	ISM	ENSMUSG00000003824.13	ENSMUST00000170296.2	929	5	327	0	0	0	3prime_fragment	FALSE	canonical	3	1047	junction_1	431.92772029074	1376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGCTGGTCCTTT	NA	False	NA	81	True	NA	NA	NA	85599066	85614075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_85599462_85610059_85610214_85612563_85612753_85613763
ENSMUSG00000003848.15_108139118_108151683_1	chr8	-	1649	9	NIC	ENSMUSG00000003848.15	novel	1658	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_7	161.008540146167	1286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTGTTTTATTTGGG	NA	False	NA	0	True	AATAAA	-17	NA	108151683	108139117	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_108139816_108142737_108142883_108143625_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151383_108151503_108151597
ENSMUSG00000003848.15_108139234_108151683_1	chr8	-	1547	9	FSM	ENSMUSG00000003848.15	ENSMUST00000003946.9	1658	9	-2	113	0	-113	multi-exon	FALSE	canonical	3	419	junction_2	34.7902195307819	927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTTAAGTTCTCGTA	NA	False	NA	-8	True	AATAAA	-17	NA	108151683	108139233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_108139816_108142737_108142883_108143625_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369_108151503_108151597
ENSMUSG00000003863.19_44988546_44991658_1	chr7	-	1590	7	NNC	ENSMUSG00000003863.19	novel	4575	29	NA	NA	-1074	0	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_6	15.0711276581711	180	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTTTGTTCTTAAGATG	5912	False	NA	2	True	NA	NA	NA	44991658	44988545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991551
ENSMUSG00000003863.19_44988546_44993069_1	chr7	-	1752	8	ISM	ENSMUSG00000003863.19	ENSMUST00000211067.2	4565	30	23069	-4	-2485	0	3prime_fragment	FALSE	canonical	3	8	junction_7	19.3422451897289	189	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTTTGTTCTTAAGATG	4501	False	NA	2	True	NA	NA	NA	44993069	44988545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44992976
ENSMUSG00000003863.19_44988697_44991658_1	chr7	-	1439	7	NNC	ENSMUSG00000003863.19	novel	4565	30	NA	NA	-1074	0	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_6	15.0711276581711	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTGGTGACCAGCCTTT	5912	False	NA	0	True	NA	NA	NA	44991658	44988696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991551
ENSMUSG00000003863.19_44988697_44993101_1	chr7	-	1633	8	ISM	ENSMUSG00000003863.19	ENSMUST00000211067.2	4565	30	23037	147	-2517	0	3prime_fragment	FALSE	canonical	3	8	junction_7	19.3422451897289	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTGGTGACCAGCCTTT	4469	False	NA	0	True	NA	NA	NA	44993101	44988696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44992976
ENSMUSG00000003865.17_45097029_45106043_1	chr7	+	2210	7	NIC	ENSMUSG00000003865.17	novel	480	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	83.740505266103	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGCTGGACATAAGCTC	NA	False	NA	25	True	AATACA	-21	NA	45097028	45106043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_45097078_45097321_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
ENSMUSG00000003868.15_45071322_45083704_1	chr7	-	1491	15	FSM	ENSMUSG00000003868.15	ENSMUST00000107771.12	1834	15	343	0	-3	0	multi-exon	FALSE	canonical	3	1951	junction_14	206.139144605714	7938	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCTGCTGTGTCCTCAG	-16	True	NA	-4	True	TATAAA	-15	NA	45083704	45071321	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
ENSMUSG00000003868.15_45071322_45083704_2	chr7	-	1577	14	NIC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	-3	0	intron_retention	FALSE	canonical	3	1951	junction_13	209.501917066259	7582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCTGCTGTGTCCTCAG	-16	True	NA	-4	True	TATAAA	-15	NA	45083704	45071321	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
ENSMUSG00000003873.12_45111121_45115901_1	chr7	-	912	5	ISM	ENSMUSG00000003873.12	ENSMUST00000211365.2	801	6	359	0	298	0	3prime_fragment	FALSE	canonical	3	256	junction_1	1275.81591540473	6948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCCCTTGTCCGCCCA	10002	False	NA	-2	True	AATAAA	-22	NA	45115901	45111120	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_45111387_45112822_45112928_45114612_45114749_45115400_45115548_45115643
ENSMUSG00000003873.12_45111121_45116209_1	chr7	-	1220	5	ISM	ENSMUSG00000003873.12	ENSMUST00000211365.2	801	6	51	0	-7	0	intron_retention	FALSE	canonical	3	256	junction_1	1275.81591540473	7659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCCCTTGTCCGCCCA	9694	False	NA	-2	True	AATAAA	-22	NA	45116209	45111120	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_45111387_45112822_45112928_45114612_45114749_45115400_45115548_45115643
ENSMUSG00000003873.12_45111121_45116261_1	chr7	-	750	5	NIC	ENSMUSG00000003873.12	novel	801	6	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	105	junction_4	1515.54792072042	3405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCCCTTGTCCGCCCA	9976	False	NA	-2	True	AATAAA	-22	NA	45116261	45111120	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_45111387_45112822_45112928_45114612_45114749_45115400_45115548_45116165
ENSMUSG00000003923.15_71063388_71073849_1	chr10	-	1812	7	FSM	ENSMUSG00000003923.15	ENSMUST00000092430.11	4167	7	261	2094	261	888	multi-exon	FALSE	canonical	3	350	junction_5	32.9212022191711	3138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCACATGCTTTCTTGGG	NA	False	NA	NA	False	NA	NA	NA	71073849	71063387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072745_71072862_71073669
ENSMUSG00000003923.15_71063766_71073508_1	chr10	-	1475	7	FSM	ENSMUSG00000003923.15	ENSMUST00000121685.8	899	7	0	-576	0	510	multi-exon	FALSE	canonical	1	9	junction_6	143.827056641726	1125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTTCTGAAATTATGTA	NA	False	NA	-10	True	AATAAA	-18	NA	71073508	71063765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072745_71072862_71073287
ENSMUSG00000003923.15_71063766_71073900_1	chr10	-	1485	7	FSM	ENSMUSG00000003923.15	ENSMUST00000092430.11	4167	7	210	2472	210	510	multi-exon	FALSE	canonical	3	350	junction_5	32.9212022191711	3086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTTCTGAAATTATGTA	NA	False	NA	-10	True	AATAAA	-18	NA	71073900	71063765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072745_71072862_71073669
ENSMUSG00000003923.15_71064276_71073849_1	chr10	-	924	7	FSM	ENSMUSG00000003923.15	ENSMUST00000092430.11	4167	7	261	2982	261	0	multi-exon	FALSE	canonical	3	350	junction_5	32.9212022191711	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCTGTAGCCATGGACT	NA	False	NA	NA	False	GATAAA	-28	NA	71073849	71064275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072745_71072862_71073669
ENSMUSG00000003970.10_76788503_76790514_1	chr15	+	819	5	FSM	ENSMUSG00000003970.10	ENSMUST00000229183.2	1020	5	201	0	0	0	multi-exon	FALSE	canonical	3	10804	junction_2	302.309754225695	265455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	False	NA	34	True	AATAAA	-18	NA	76788502	76790514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
ENSMUSG00000003992.16_91609246_91849364_1	chr13	+	1696	17	FSM	ENSMUSG00000003992.16	ENSMUST00000004094.15	3957	17	77	2184	0	9	multi-exon	TRUE	canonical	3	38	junction_13	7.3396930283221	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACTGTGTCTGAAGCAAG	2798	False	NA	3	True	AATAAA	-23	NA	91609245	91849364	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728_91712814_91790420_91790511_91812236_91812297_91817794_91817862_91818512_91818584_91823176_91823245_91828708_91828758_91831800_91831837_91833329_91833385_91836914_91836986_91838978_91839058_91841149_91841179_91842137_91842237_91848784
ENSMUSG00000004018.10_26337202_26421430_1	chr11	+	992	11	NIC	ENSMUSG00000004018.10	novel	2724	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_2	77.436167260525	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTGATGACTTCAGAG	NA	False	NA	12	True	AATAAA	-19	NA	26337201	26421430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_26337311_26347745_26347805_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
ENSMUSG00000004018.10_26337202_26421430_2	chr11	+	1154	13	NIC	ENSMUSG00000004018.10	novel	2724	14	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	2	2	junction_3	71.9477047738302	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTGATGACTTCAGAG	NA	False	NA	12	True	AATAAA	-19	NA	26337201	26421430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_26337311_26347745_26347805_26349648_26349710_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
ENSMUSG00000004018.10_26337202_26421430_3	chr11	+	1206	14	NNC	ENSMUSG00000004018.10	novel	2724	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	69.488835253241	890	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTGATGACTTCAGAG	NA	False	NA	12	True	AATAAA	-19	NA	26337201	26421430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_26337311_26347750_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
ENSMUSG00000004018.10_26337202_26421430_4	chr11	+	1211	14	FSM	ENSMUSG00000004018.10	ENSMUST00000004120.9	2724	14	1067	446	0	0	multi-exon	FALSE	canonical	3	204	junction_1	21.2544461064019	1115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTGATGACTTCAGAG	NA	False	NA	12	True	AATAAA	-19	NA	26337201	26421430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
ENSMUSG00000004018.10_26337202_26421878_1	chr11	+	1659	14	FSM	ENSMUSG00000004018.10	ENSMUST00000004120.9	2724	14	1067	-2	0	2	multi-exon	FALSE	canonical	3	204	junction_1	21.2544461064019	1761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTAGTCATTAACACCCCT	NA	False	NA	15	True	AATAAA	-17	NA	26337201	26421878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
ENSMUSG00000004018.10_26337202_26421878_2	chr11	+	1602	13	NIC	ENSMUSG00000004018.10	novel	2724	14	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	2	2	junction_3	71.9477047738302	786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTAGTCATTAACACCCCT	NA	False	NA	15	True	AATAAA	-17	NA	26337201	26421878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_26337311_26347745_26347805_26349648_26349710_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
ENSMUSG00000004018.10_26421404_26543622_1	chr11	+	1591	13	Fusion	ENSMUSG00000004018.10_ENSMUSG00000068314.6	novel	2724	14	NA	NA	3069	-240	multi-exon	FALSE	non_canonical	0	0	junction_1	0	285	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCCTCGCAGCCAGGTGG	9306	False	NA	NA	False	NA	NA	NA	26421403	26543622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr11_+_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543589
ENSMUSG00000004018.10_26421404_26543622_2	chr11	+	1795	13	Fusion	ENSMUSG00000004018.10_ENSMUSG00000068314.6	novel	2724	14	NA	NA	3069	-240	multi-exon	FALSE	non_canonical	0	0	junction_1	0	316	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCCTCGCAGCCAGGTGG	9306	False	NA	NA	False	NA	NA	NA	26421403	26543622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr11_+_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543385
ENSMUSG00000004035.13_107833650_107838983_1	chr3	-	1227	8	FSM	ENSMUSG00000004035.13	ENSMUST00000004137.11	1377	8	150	0	0	0	multi-exon	FALSE	canonical	1	5	junction_6	2.49897938350513	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTTTTTCTTTGGTCGG	NA	False	NA	-7	True	NA	NA	NA	107838983	107833649	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_107834297_107836185_107836297_107836378_107836475_107837589_107837691_107837788_107837871_107838143_107838209_107838630_107838707_107838934
ENSMUSG00000004038.10_107871012_107876350_1	chr3	-	1001	6	NNC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	249	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	122.048187204891	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876350	107871011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_107871613_107873402_107873514_107873594_107873691_107875451_107875517_107876078_107876155_107876298
ENSMUSG00000004038.10_107871012_107876424_1	chr3	-	1176	7	NNC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	175	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	113.881029539115	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876424	107871011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875451_107875517_107876078_107876155_107876298
ENSMUSG00000004038.10_107871012_107876484_1	chr3	-	1114	7	NIC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	115	0	combination_of_known_splicesites	FALSE	canonical	3	37	junction_4	86.6033422501054	734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876484	107871011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875451_107875517_107876078_107876155_107876420
ENSMUSG00000004038.10_107871012_107876484_2	chr3	-	1013	6	NIC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	115	0	combination_of_known_splicesites	FALSE	canonical	3	50	junction_3	88.3388929068052	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876484	107871011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_107871613_107873402_107873514_107873594_107873691_107875451_107875517_107876078_107876155_107876420
ENSMUSG00000004038.10_107871012_107876484_3	chr3	-	1196	8	FSM	ENSMUSG00000004038.10	ENSMUST00000004136.10	1311	8	115	0	115	0	multi-exon	FALSE	canonical	3	154	junction_5	50.6947648547014	1026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876484	107871011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875081_107875164_107875451_107875517_107876078_107876155_107876420
ENSMUSG00000004056.16_27291171_27337653_1	chr7	+	1752	14	FSM	ENSMUSG00000004056.16	ENSMUST00000108344.9	4544	14	194	2598	0	58	multi-exon	FALSE	canonical	3	377	junction_6	55.340153093199	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTGTGTTCCCTTCCCTG	NA	False	NA	18	True	TTTAAA	-24	NA	27291170	27337653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
ENSMUSG00000004056.16_27291171_27338176_1	chr7	+	2275	14	FSM	ENSMUSG00000004056.16	ENSMUST00000108344.9	4544	14	194	2075	0	581	multi-exon	FALSE	canonical	3	377	junction_6	55.340153093199	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGTGCCTTACCAGGGC	NA	False	NA	NA	False	AATAAA	-38	NA	27291170	27338176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
ENSMUSG00000004056.16_27291171_27338878_1	chr7	+	2977	14	FSM	ENSMUSG00000004056.16	ENSMUST00000108344.9	4544	14	194	1373	0	0	multi-exon	FALSE	canonical	3	377	junction_6	55.340153093199	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAGTCCACATTTCCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	27291170	27338878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
ENSMUSG00000004056.16_27335731_27337653_1	chr7	+	531	4	ISM	ENSMUSG00000004056.16	ENSMUST00000085917.5	1392	12	27644	-58	253	58	3prime_fragment	FALSE	canonical	3	428	junction_1	63.6151624134442	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTGTGTTCCCTTCCCTG	NA	False	NA	18	True	TTTAAA	-24	NA	27335730	27337653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_27335904_27336347_27336436_27336516_27336620_27337486
ENSMUSG00000004069.18_4501978_4524810_2	chr16	+	1855	12	FSM	ENSMUSG00000004069.18	ENSMUST00000060067.12	2648	12	44	749	0	268	multi-exon	FALSE	canonical	3	184	junction_10	248.960018695956	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTGTGAAGTGATTAATT	NA	False	NA	22	True	ATTAAA	-39	NA	4501977	4524810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4523707_4523825_4524431
ENSMUSG00000004070.16_4544227_4584113_1	chr16	+	1000	4	NIC	ENSMUSG00000004070.16	novel	1730	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	190.073669928268	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTGCCTAACAGCATTT	NA	False	NA	14	True	AATAAA	-15	NA	4544226	4584113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_4544336_4582469_4582962_4583626_4583754_4583841
ENSMUSG00000004070.16_4544227_4584113_2	chr16	+	1233	6	NNC	ENSMUSG00000004070.16	novel	1730	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	159.038360152512	2274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTGCCTAACAGCATTT	NA	False	NA	14	True	AATAAA	-15	NA	4544226	4584113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_4544336_4580422_4580546_4581600_4581711_4582469_4582962_4583626_4583754_4583841
ENSMUSG00000004070.16_4544227_4584113_3	chr16	+	1235	6	NNC	ENSMUSG00000004070.16	novel	1730	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	158.616518685791	2460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTGCCTAACAGCATTT	NA	False	NA	14	True	AATAAA	-15	NA	4544226	4584113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_4544340_4580428_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
ENSMUSG00000004070.16_4574858_4584113_1	chr16	+	1262	6	NIC	ENSMUSG00000004070.16	novel	1392	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	152.242438235861	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTGCCTAACAGCATTT	NA	False	NA	14	True	AATAAA	-15	NA	4574857	4584113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_4574992_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
ENSMUSG00000004071.14_4544227_4584113_1	chr16	-	1237	6	NIC	ENSMUSG00000004071.14	novel	3953	6	NA	NA	3848	23985	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGAGTCACCAGGCCACGC	NA	False	NA	NA	False	NA	NA	NA	4584113	4544226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_4544336_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
ENSMUSG00000004071.14_4584705_4607800_1	chr16	-	2519	6	FSM	ENSMUSG00000004071.14	ENSMUST00000004173.12	3953	6	54	1380	-1	0	multi-exon	FALSE	canonical	3	434	junction_5	28.1240110937256	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCTATTTTAGACCAT	NA	False	NA	-14	True	AATAAA	-14	NA	4607800	4584704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4607694
ENSMUSG00000004071.14_4585203_4607800_1	chr16	-	2021	6	FSM	ENSMUSG00000004071.14	ENSMUST00000004173.12	3953	6	54	1878	-1	0	multi-exon	FALSE	canonical	3	434	junction_5	28.1240110937256	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGGCCTCTGCTGTCTTG	NA	False	NA	-19	True	ATTAAA	-21	NA	4607800	4585202	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4607694
ENSMUSG00000004071.14_4585612_4607800_1	chr16	-	1612	6	FSM	ENSMUSG00000004071.14	ENSMUST00000004173.12	3953	6	54	2287	-1	-409	multi-exon	FALSE	canonical	3	434	junction_5	28.1240110937256	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTGTCTGTGCTATGT	NA	False	NA	0	True	AATGAA	-18	NA	4607800	4585611	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4607694
ENSMUSG00000004096.10_14411943_14421670_1	chr9	+	878	7	FSM	ENSMUSG00000004096.10	ENSMUST00000004200.9	1111	7	30	203	0	9	multi-exon	FALSE	canonical	3	777	junction_1	58.5484130157826	10563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGACTTTTTTTTTTGGTT	NA	False	NA	22	True	ATTAAA	-22	NA	14411942	14421670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_14412078_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
ENSMUSG00000004096.10_14411943_14421858_1	chr9	+	1028	7	FSM	ENSMUSG00000004096.10	ENSMUST00000213913.2	831	7	0	-197	0	0	multi-exon	FALSE	canonical	3	58	junction_1	320.421423891863	12800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTTTGCTACAATTTAT	NA	False	NA	-12	True	AATAAA	-31	NA	14411942	14421858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_14412040_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
ENSMUSG00000004100.13_20802815_20803474_1	chr9	+	576	2	ISM	ENSMUSG00000004100.13	ENSMUST00000147780.2	1834	9	3234	0	881	0	3prime_fragment	FALSE	canonical	3	890	junction_1	0	3327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	13	True	AATAAA	-14	NA	20802814	20803474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_20803044_20803127
ENSMUSG00000004127.13_137849230_137862880_1	chr3	+	1302	8	FSM	ENSMUSG00000004127.13	ENSMUST00000040321.13	4025	8	21	2702	0	1301	multi-exon	FALSE	canonical	3	147	junction_7	16.9609395196067	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATCGTTTGGTTTTGTGTA	NA	False	NA	NA	False	AAGAAA	-1	NA	137849229	137862880	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_137849358_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
ENSMUSG00000004127.13_137849230_137863198_1	chr3	+	1620	8	FSM	ENSMUSG00000004127.13	ENSMUST00000040321.13	4025	8	21	2384	0	1619	multi-exon	FALSE	canonical	3	147	junction_7	16.9609395196067	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCAGTTGTTTGCTGGGC	NA	False	NA	NA	False	AATACA	-16	NA	137849229	137863198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_137849358_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
ENSMUSG00000004127.13_137849230_137864038_1	chr3	+	2460	8	FSM	ENSMUSG00000004127.13	ENSMUST00000040321.13	4025	8	21	1544	0	-1541	multi-exon	FALSE	canonical	3	147	junction_7	16.9609395196067	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTCTAAAATTCAGGTTT	NA	False	NA	4	True	AATAAA	-19	NA	137849229	137864038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_137849358_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
ENSMUSG00000004207.15_60113450_60138377_1	chr10	+	2639	14	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	277.668824918032	1223	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	6990	False	NA	NA	False	AATAAA	-17	NA	60113449	60138377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136562_60136661_60137472
ENSMUSG00000004207.15_60113450_60138377_2	chr10	+	2640	14	NNC	ENSMUSG00000004207.15	novel	2654	14	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	282.946207278023	1475	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	6990	False	NA	NA	False	AATAAA	-17	NA	60113449	60138377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134885_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
ENSMUSG00000004207.15_60113450_60138377_3	chr10	+	2642	14	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	277.668824918032	1345	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	6990	False	NA	NA	False	AATAAA	-17	NA	60113449	60138377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136391_60136552_60136661_60137472
ENSMUSG00000004207.15_60113450_60138377_4	chr10	+	2646	14	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	282.91927048094	1538	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	6990	False	NA	NA	False	AATAAA	-17	NA	60113449	60138377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135560_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
ENSMUSG00000004207.15_60113450_60138377_5	chr10	+	2649	14	FSM	ENSMUSG00000004207.15	ENSMUST00000105465.8	2646	14	1	-4	0	1	multi-exon	FALSE	canonical	3	864	junction_6	81.2601199887849	1788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	6990	False	NA	NA	False	AATAAA	-17	NA	60113449	60138377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
ENSMUSG00000004221.17_73456895_73472539_1	chrX	+	1179	5	NIC	ENSMUSG00000004221.17	novel	727	4	NA	NA	-11245	-3935	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGACCCGCCTCAGGAG	NA	False	NA	NA	False	NA	NA	NA	73456894	73472539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_73457688_73458513_73458623_73458721_73458760_73471657_73471786_73472428
ENSMUSG00000004233.15_99048409_99122446_1	chr3	+	919	6	NNC	ENSMUSG00000004233.15	novel	4410	6	NA	NA	0	-1471	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	17.2973986483517	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGAGAAACTTTTAAAAAT	NA	False	NA	NA	False	NA	NA	NA	99048408	99122446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_99048505_99094796_99095055_99111851_99111933_99112540_99112627_99121971_99122091_99122167
ENSMUSG00000004233.15_99048409_99124574_1	chr3	+	1440	6	FSM	ENSMUSG00000004233.15	ENSMUST00000004343.7	4410	6	25	2945	0	657	multi-exon	FALSE	canonical	3	38	junction_2	3.66606055596467	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCATGTGATGATGATGTG	NA	False	NA	NA	False	CATAAA	-19	NA	99048408	99124574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_99048505_99094796_99095055_99111851_99111933_99112540_99112627_99121971_99122091_99123774
ENSMUSG00000004233.15_99048409_99125669_1	chr3	+	2535	6	FSM	ENSMUSG00000004233.15	ENSMUST00000004343.7	4410	6	25	1850	0	-850	multi-exon	FALSE	canonical	3	38	junction_2	3.66606055596467	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTCAACGTTGTACTGTG	NA	False	NA	4	True	NA	NA	NA	99048408	99125669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_99048505_99094796_99095055_99111851_99111933_99112540_99112627_99121971_99122091_99123774
ENSMUSG00000004264.18_124689299_124693913_10	chr6	+	1305	9	NNC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1187.58568111947	833	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692137_124692561_124692623_124692916_124692994_124693568
ENSMUSG00000004264.18_124689299_124693913_11	chr6	+	1304	9	NNC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1180.04724481692	3853	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124689519_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692994_124693568
ENSMUSG00000004264.18_124689299_124693913_2	chr6	+	1307	9	NNC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1308.6761380781	568	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690954_124691132_124691792_124691923_124692022_124692137_124692551_124692623_124692916_124692994_124693568
ENSMUSG00000004264.18_124689299_124693913_3	chr6	+	1310	9	NNC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1316.23808161746	509	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692027_124692137_124692551_124692623_124692916_124692994_124693568
ENSMUSG00000004264.18_124689299_124693913_4	chr6	+	1305	9	NNC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1187.58568111947	1207	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692551_124692623_124692916_124692994_124693568
ENSMUSG00000004264.18_124689299_124693913_5	chr6	+	542	3	NNC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	240	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124689419_124692916_124692994_124693568
ENSMUSG00000004264.18_124689299_124693913_6	chr6	+	1317	9	NNC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	1187.58568111947	499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692149_124692561_124692623_124692916_124692994_124693568
ENSMUSG00000004264.18_124689299_124693913_7	chr6	+	1307	9	NNC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1187.58568111947	1018	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692135_124692557_124692623_124692916_124692994_124693568
ENSMUSG00000004264.18_124689299_124693913_9	chr6	+	1300	9	NNC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1167.51509626214	4463	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692034_124692127_124692544_124692623_124692916_124692994_124693568
ENSMUSG00000004264.18_124692102_124693913_1	chr6	+	522	4	NNC	ENSMUSG00000004264.18	novel	734	3	NA	NA	-209	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1224.7089450151	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124692101	124693913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124692116_124692536_124692623_124692916_124692994_124693568
ENSMUSG00000004264.18_124692102_124693913_2	chr6	+	530	4	NNC	ENSMUSG00000004264.18	novel	734	3	NA	NA	-209	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1224.7089450151	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124692101	124693913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124692135_124692547_124692623_124692916_124692994_124693568
ENSMUSG00000004264.18_124692102_124693913_3	chr6	+	526	4	NNC	ENSMUSG00000004264.18	novel	734	3	NA	NA	-209	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	1224.7089450151	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124692101	124693913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124692149_124692565_124692623_124692916_124692994_124693568
ENSMUSG00000004267.17_124737328_124746483_1	chr6	-	2332	12	FSM	ENSMUSG00000004267.17	ENSMUST00000004378.15	2795	12	153	310	0	0	multi-exon	FALSE	canonical	3	32	junction_11	8.77449346328266	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCCCTTGTCTGAGGAC	10019	False	NA	-6	True	ATTAAA	-17	NA	124746483	124737327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124738326_124738610_124738670_124739615_124739725_124739967_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200_124745301_124746399
ENSMUSG00000004267.17_124737328_124746584_1	chr6	-	2433	12	FSM	ENSMUSG00000004267.17	ENSMUST00000004378.15	2795	12	52	310	0	0	multi-exon	FALSE	canonical	3	32	junction_11	8.77449346328266	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCCCTTGTCTGAGGAC	9918	False	NA	-6	True	ATTAAA	-17	NA	124746584	124737327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124738326_124738610_124738670_124739615_124739725_124739967_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200_124745301_124746399
ENSMUSG00000004268.12_124640135_124681133_1	chr6	-	1874	12	Genic_Genomic	ENSMUSG00000004268.12	novel	4329	1	NA	NA	1489	40913	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCCCCGAATGTGGGCAGAA	NA	False	NA	NA	False	NA	NA	NA	124681133	124640134	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677611_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
ENSMUSG00000004268.12_124681345_124689021_1	chr6	-	938	6	NNC	ENSMUSG00000004268.12	novel	1034	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_5	539.261569185122	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTTTCAGACCTGAT	NA	False	NA	-15	True	TATAAA	-18	NA	124689021	124681344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_124681622_124681901_124682052_124682120_124682180_124682477_124682620_124682703_124682806_124688813
ENSMUSG00000004268.12_124681345_124689021_2	chr6	-	913	6	FSM	ENSMUSG00000004268.12	ENSMUST00000004379.8	1034	6	120	1	-1	0	multi-exon	FALSE	canonical	3	1245	junction_5	105.298433036774	4766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTTTCAGACCTGAT	NA	False	NA	-15	True	TATAAA	-18	NA	124689021	124681344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124681622_124681901_124682052_124682120_124682180_124682477_124682620_124682703_124682806_124688838
ENSMUSG00000004268.12_124681345_124689021_3	chr6	-	811	5	NIC	ENSMUSG00000004268.12	novel	1034	6	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_4	600.666712911578	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTTTCAGACCTGAT	NA	False	NA	-15	True	TATAAA	-18	NA	124689021	124681344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_124681622_124681901_124682052_124682120_124682180_124682477_124682620_124688838
ENSMUSG00000004268.12_124681345_124689021_4	chr6	-	1280	4	NIC	ENSMUSG00000004268.12	novel	917	5	NA	NA	-1	0	intron_retention	FALSE	canonical	3	1245	junction_3	125.603432366406	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTTTCAGACCTGAT	NA	False	NA	-15	True	TATAAA	-18	NA	124689021	124681344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_124681622_124681901_124682620_124682703_124682806_124688838
ENSMUSG00000004268.12_124681345_124689118_1	chr6	-	1308	5	NIC	ENSMUSG00000004268.12	novel	1034	6	NA	NA	-14	0	intron_retention	FALSE	canonical	3	1245	junction_4	117.50957407803	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTTTCAGACCTGAT	NA	False	NA	-15	True	TATAAA	-18	NA	124689118	124681344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_124681622_124681901_124682052_124682120_124682620_124682703_124682806_124688838
ENSMUSG00000004270.14_124639990_124681133_1	chr6	+	2033	13	FSM	ENSMUSG00000004270.14	ENSMUST00000004381.14	2281	13	0	248	0	153	multi-exon	TRUE	canonical	3	738	junction_2	58.4776785524946	891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTAGCATCCCAGACTGC	NA	False	NA	33	True	GATAAA	-27	NA	124639989	124681133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
ENSMUSG00000004270.14_124640135_124681133_1	chr6	+	1888	13	FSM	ENSMUSG00000004270.14	ENSMUST00000004381.14	2281	13	145	248	0	153	multi-exon	FALSE	canonical	3	738	junction_2	58.4776785524946	852	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTAGCATCCCAGACTGC	NA	False	NA	33	True	GATAAA	-27	NA	124640134	124681133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
ENSMUSG00000004270.14_124640135_124681381_1	chr6	+	2136	13	FSM	ENSMUSG00000004270.14	ENSMUST00000004381.14	2281	13	145	0	0	0	multi-exon	FALSE	canonical	3	738	junction_2	58.4776785524946	959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTATACAGTGTTGTCTC	NA	False	NA	NA	False	AATAAA	-25	NA	124640134	124681381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
ENSMUSG00000004270.14_124681345_124689021_1	chr6	+	926	6	NNC	ENSMUSG00000004270.14	novel	2281	13	NA	NA	1377	7640	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTTGCACCGAAGTCCTT	NA	False	NA	NA	False	NA	NA	NA	124681344	124689021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124681622_124681901_124682052_124682120_124682180_124682477_124682620_124682703_124682806_124688825
ENSMUSG00000004270.14_124681345_124689021_2	chr6	+	918	6	NNC	ENSMUSG00000004270.14	novel	2281	13	NA	NA	1377	7640	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTTGCACCGAAGTCCTT	NA	False	NA	NA	False	NA	NA	NA	124681344	124689021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124681622_124681896_124682052_124682120_124682180_124682477_124682620_124682703_124682806_124688838
ENSMUSG00000004270.14_124681345_124689118_1	chr6	+	1010	6	NIC	ENSMUSG00000004270.14	novel	2281	13	NA	NA	1377	7737	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	9367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCCCGTACGGAAGCCTC	NA	False	NA	NA	False	NA	NA	NA	124681344	124689118	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_124681622_124681901_124682052_124682120_124682180_124682477_124682620_124682703_124682806_124688838
ENSMUSG00000004270.14_124681345_124689118_2	chr6	+	1005	6	NNC	ENSMUSG00000004270.14	novel	2281	13	NA	NA	1377	7737	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5644	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCCCGTACGGAAGCCTC	NA	False	NA	NA	False	NA	NA	NA	124681344	124689118	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124681622_124681901_124682052_124682120_124682175_124682477_124682620_124682703_124682806_124688838
ENSMUSG00000004270.14_124681345_124689118_3	chr6	+	1005	6	NNC	ENSMUSG00000004270.14	novel	2281	13	NA	NA	1377	7737	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5479	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCCCGTACGGAAGCCTC	NA	False	NA	NA	False	NA	NA	NA	124681344	124689118	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124681617_124681901_124682052_124682120_124682180_124682477_124682620_124682703_124682806_124688838
ENSMUSG00000004341.9_21496409_21503795_1	chr13	+	1227	5	FSM	ENSMUSG00000004341.9	ENSMUST00000004453.9	1340	5	114	-1	114	1	multi-exon	FALSE	canonical	3	9	junction_2	5.71729831301464	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGACTCTGAGTGATGTT	1039	False	NA	NA	False	NA	NA	NA	21496408	21503795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_21496515_21497817_21497972_21501154_21501273_21501738_21501839_21503046
ENSMUSG00000004356.9_88582469_88585270_1	chr10	-	875	4	ISM	ENSMUSG00000004356.9	ENSMUST00000004470.9	8821	62	77396	0	-1577	0	3prime_fragment	FALSE	canonical	3	237	junction_3	25.3902868567227	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTGCCTGAAAGACTATG	NA	False	NA	-1	True	ATTAAA	-16	NA	88585270	88582468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_88582922_88583137_88583284_88584087_88584215_88585121
ENSMUSG00000004359.17_88510634_88520893_1	chr10	-	1684	5	NIC	ENSMUSG00000004359.17	novel	1763	6	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	169	junction_4	139.833829955415	869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	88520893	88510633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88520827
ENSMUSG00000004359.17_88511134_88520893_1	chr10	-	1184	5	NIC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	169	junction_4	139.833829955415	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATTTGTAGACTGTCT	NA	False	NA	-5	True	AATAAA	-22	NA	88520893	88511133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88520827
ENSMUSG00000004359.17_88511134_88520893_2	chr10	-	1280	6	FSM	ENSMUSG00000004359.17	ENSMUST00000138734.2	646	6	-16	-618	-16	0	multi-exon	FALSE	canonical	3	380	junction_4	47.5815090134813	1133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATTTGTAGACTGTCT	NA	False	NA	-5	True	AATAAA	-22	NA	88520893	88511133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88516340_88516437_88520827
ENSMUSG00000004359.17_88511134_88520893_3	chr10	-	1566	6	NNC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	180.578625534696	720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATTTGTAGACTGTCT	NA	False	NA	-5	True	AATAAA	-22	NA	88520893	88511133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_88511933_88513361_88513757_88514385_88514499_88515720_88515818_88516340_88516437_88520827
ENSMUSG00000004393.11_6208919_6217746_1	chr11	-	1922	14	NNC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	287.13372345987	1981	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGTGTTGTCTGGCTCTG	4515	False	NA	-2	True	NA	NA	NA	6217746	6208918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212729_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217659
ENSMUSG00000004394.13_6220714_6224865_1	chr11	-	1653	5	FSM	ENSMUSG00000004394.13	ENSMUST00000004508.13	2003	5	5	345	0	-345	multi-exon	FALSE	canonical	3	418	junction_4	49.7663289785373	1164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGATGTGAAATAATAGAT	5343	False	NA	-1	True	AATAAA	-16	NA	6224865	6220713	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397_6224499_6224673
ENSMUSG00000004394.13_6220714_6224865_2	chr11	-	1828	4	FSM	ENSMUSG00000004394.13	ENSMUST00000130621.2	886	4	5	-947	0	-345	multi-exon	FALSE	canonical	3	463	junction_2	40.4337592722825	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGATGTGAAATAATAGAT	5343	False	NA	-1	True	AATAAA	-16	NA	6224865	6220713	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397
ENSMUSG00000004394.13_6220714_6224865_3	chr11	-	1646	5	NIC	ENSMUSG00000004394.13	novel	2003	5	NA	NA	0	-345	combination_of_known_splicesites	FALSE	canonical	3	36	junction_4	203.804287246368	1141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGATGTGAAATAATAGAT	5343	False	NA	-1	True	AATAAA	-16	NA	6224865	6220713	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397_6224499_6224680
ENSMUSG00000004394.13_6221147_6224865_1	chr11	-	1220	5	FSM	ENSMUSG00000004394.13	ENSMUST00000004508.13	2003	5	5	778	0	514	multi-exon	FALSE	canonical	3	418	junction_4	49.7663289785373	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAATCATCATCACTCCCT	5343	False	NA	NA	False	GATAAA	-21	NA	6224865	6221146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397_6224499_6224673
ENSMUSG00000004446.13_120870080_120893797_1	chr6	-	2042	7	NIC	ENSMUSG00000004446.13	novel	2415	7	NA	NA	0	-265	combination_of_known_splicesites	FALSE	canonical	3	32	junction_5	439.124507780348	1933	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGGAGAGCTGTATCT	NA	False	NA	-26	True	AATAAA	-16	NA	120893797	120870079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120883389_120883525_120893694
ENSMUSG00000004446.13_120870080_120893797_2	chr6	-	1907	6	FSM	ENSMUSG00000004446.13	ENSMUST00000004560.12	2189	6	17	265	0	-265	multi-exon	FALSE	canonical	3	795	junction_5	85.8011654932496	1979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGGAGAGCTGTATCT	NA	False	NA	-26	True	AATAAA	-16	NA	120893797	120870079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893694
ENSMUSG00000004446.13_120871210_120893797_1	chr6	-	777	6	FSM	ENSMUSG00000004446.13	ENSMUST00000004560.12	2189	6	17	1395	0	1369	multi-exon	FALSE	canonical	3	795	junction_5	85.8011654932496	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAGGAACCGCGACCAT	NA	False	NA	NA	False	NA	NA	NA	120893797	120871209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893694
ENSMUSG00000004451.15_119398035_119432355_1	chr1	-	2120	5	FSM	ENSMUSG00000004451.15	ENSMUST00000004565.15	2289	5	169	0	169	0	multi-exon	FALSE	canonical	3	967	junction_4	66.8169140263152	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGCCCTTTTTCCTGCAT	NA	False	NA	-4	True	AATAAA	-21	NA	119432355	119398034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119432306
ENSMUSG00000004451.15_119399064_119432355_1	chr1	-	1091	5	FSM	ENSMUSG00000004451.15	ENSMUST00000004565.15	2289	5	169	1029	169	811	multi-exon	FALSE	canonical	3	967	junction_4	66.8169140263152	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGCATGGTGGTGCACC	NA	False	NA	NA	False	ATTAAA	-14	NA	119432355	119399063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119432306
ENSMUSG00000004460.18_22676616_22690856_2	chr16	+	1619	10	NNC	ENSMUSG00000004460.18	novel	2513	11	NA	NA	0	-200	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	335.445640570537	1291	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTTGACTCCTGTTTC	NA	False	NA	24	True	AATACA	-17	NA	22676615	22690856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_22676860_22681291_22681449_22684203_22684302_22685669_22685803_22687460_22687604_22687875_22687954_22688165_22688224_22689320_22689433_22689689_22689850_22690420
ENSMUSG00000004460.18_22676616_22690856_3	chr16	+	1618	10	NNC	ENSMUSG00000004460.18	novel	2513	11	NA	NA	0	-200	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	336.222846441368	1336	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTTGACTCCTGTTTC	NA	False	NA	24	True	AATACA	-17	NA	22676615	22690856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_22676860_22681291_22681449_22684203_22684302_22685669_22685797_22687460_22687604_22687870_22687954_22688165_22688224_22689320_22689433_22689689_22689850_22690420
ENSMUSG00000004460.18_22676616_22690856_4	chr16	+	1619	10	NNC	ENSMUSG00000004460.18	novel	2513	11	NA	NA	0	-200	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	336.687164759187	1673	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTTGACTCCTGTTTC	NA	False	NA	24	True	AATACA	-17	NA	22676615	22690856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_22676860_22681291_22681449_22684203_22684302_22685669_22685803_22687460_22687604_22687870_22687954_22688170_22688224_22689320_22689433_22689689_22689850_22690420
ENSMUSG00000004460.18_22676616_22691138_2	chr16	+	1901	10	NNC	ENSMUSG00000004460.18	novel	1927	10	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_5	335.445640570537	2602	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGTATCTGTCCAAG	NA	False	NA	30	True	AATAAA	-34	NA	22676615	22691138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_22676860_22681291_22681449_22684203_22684302_22685669_22685803_22687460_22687604_22687875_22687954_22688165_22688224_22689320_22689433_22689689_22689850_22690420
ENSMUSG00000004462.8_22644245_22676290_1	chr16	-	1219	4	ISM	ENSMUSG00000004462.8	ENSMUST00000232075.2	2645	8	127	12275	0	0	5prime_fragment	FALSE	canonical	3	49	junction_3	31.4783876475414	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAATGCCTTTGTTAGGA	NA	False	NA	NA	False	NA	NA	NA	22676290	22644244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_22644883_22652627_22652784_22660478_22660858_22676244
ENSMUSG00000004558.16_52142740_52150815_1	chr14	-	1973	15	FSM	ENSMUSG00000004558.16	ENSMUST00000111632.5	2103	15	130	0	0	0	multi-exon	TRUE	canonical	3	127	junction_6	11.1385064766607	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCATTGTTAATCCGGG	NA	False	NA	-11	True	AATAAA	-16	NA	52150815	52142739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148922_52149004_52150779
ENSMUSG00000004561.15_52122392_52129325_1	chr14	+	1524	14	NNC	ENSMUSG00000004561.15	novel	1623	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	48.1261901412816	868	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGATGTTCTGATTGC	NA	False	NA	NA	False	AATAAA	-16	NA	52122391	52129325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126675_52126990_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
ENSMUSG00000004561.15_52122392_52129325_3	chr14	+	1520	14	NNC	ENSMUSG00000004561.15	novel	1623	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	48.1261901412816	853	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGATGTTCTGATTGC	NA	False	NA	NA	False	AATAAA	-16	NA	52122391	52129325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126665_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
ENSMUSG00000004565.16_3586786_3594267_1	chr8	+	1478	9	ISM	ENSMUSG00000004565.16	ENSMUST00000208002.2	4444	35	21361	0	0	0	3prime_fragment	FALSE	canonical	1	71	junction_4	70.8774250026057	134	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGTGCTGTCTTTGGGT	NA	False	NA	17	True	AATAAA	-21	NA	3586785	3594267	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
ENSMUSG00000004565.16_3586921_3594267_1	chr8	+	1343	9	ISM	ENSMUSG00000004565.16	ENSMUST00000208002.2	4444	35	21496	0	0	0	3prime_fragment	FALSE	canonical	1	71	junction_4	70.8774250026057	104	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGTGCTGTCTTTGGGT	NA	False	NA	17	True	AATAAA	-21	NA	3586920	3594267	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
ENSMUSG00000004610.5_43093554_43107207_1	chr7	+	820	6	NIC	ENSMUSG00000004610.5	novel	893	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	783.507855735984	21804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCCTCTTTCCTCATTC	1955	False	NA	35	True	AATAAA	-18	NA	43093553	43107207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941_43104005_43105902_43106062_43107002
ENSMUSG00000004626.15_3681153_3692795_1	chr8	+	1935	19	NIC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	83.3438697042797	1014	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTCACCTCATTTTC	4585	False	NA	16	True	AATAAA	-22	NA	3681152	3692795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_3681279_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691897_3692056_3692645
ENSMUSG00000004630.19_3671551_3673372_1	chr8	-	692	4	NNC	ENSMUSG00000004630.19	novel	504	4	NA	NA	1630	1820	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCGACTGTCCAGTAAT	NA	False	NA	NA	False	NA	NA	NA	3673372	3671550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_3671974_3672341_3672429_3672592_3672626_3673223
ENSMUSG00000004630.19_3671551_3673372_3	chr8	-	325	4	NNC	ENSMUSG00000004630.19	novel	504	4	NA	NA	1630	1820	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1324	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCGACTGTCCAGTAAT	NA	False	NA	NA	False	NA	NA	NA	3673372	3671550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_3671612_3672341_3672429_3672592_3672621_3673223
ENSMUSG00000004630.19_3671551_3673372_4	chr8	-	323	4	NNC	ENSMUSG00000004630.19	novel	504	4	NA	NA	1630	1820	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1276	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCGACTGTCCAGTAAT	NA	False	NA	NA	False	NA	NA	NA	3673372	3671550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_3671605_3672341_3672429_3672592_3672626_3673223
ENSMUSG00000004637.16_115166435_115175249_1	chr8	+	657	4	ISM	ENSMUSG00000004637.16	ENSMUST00000160005.2	3781	5	-7	5309	0	-5309	5prime_fragment	FALSE	canonical	3	123	junction_1	3.39934634239519	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAGTGTTACAGTGTGAG	NA	False	NA	NA	False	ATTAAA	-18	NA	115166434	115175249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899
ENSMUSG00000004637.16_115166435_115215867_1	chr8	+	716	5	ISM	ENSMUSG00000004637.16	ENSMUST00000160862.8	1715	9	0	229552	0	14598	5prime_fragment	FALSE	canonical	3	90	junction_4	16.0058583025091	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATCTTCACGCTGTTTAC	NA	False	NA	NA	False	NA	NA	NA	115166434	115215867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637
ENSMUSG00000004637.16_115166435_115325565_1	chr8	+	766	6	NNC	ENSMUSG00000004637.16	novel	1715	9	NA	NA	0	84537	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	49.0363130751079	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAAGTCATTTGCAGGTG	NA	False	NA	NA	False	AATAAA	-18	NA	115166434	115325565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115325392
ENSMUSG00000004642.14_33797399_33809664_1	chr5	-	1652	8	FSM	ENSMUSG00000004642.14	ENSMUST00000057551.14	1906	8	254	0	-14	0	multi-exon	FALSE	canonical	3	1110	junction_4	44.1837535937436	3058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCCTATACTGTTTGG	NA	False	NA	-4	True	AATAAA	-22	NA	33809664	33797398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
ENSMUSG00000004642.14_33797399_33809664_2	chr5	-	1644	8	NNC	ENSMUSG00000004642.14	novel	1906	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	408.542156793581	2899	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCCTATACTGTTTGG	NA	False	NA	-4	True	AATAAA	-22	NA	33809664	33797398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_33798273_33799244_33799327_33801080_33801231_33802851_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
ENSMUSG00000004667.19_79871783_79875492_1	chr10	-	993	7	NNC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1069.84667904643	714	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5652	False	NA	-19	True	ATTAAA	-19	NA	79875492	79871782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_79872118_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416
ENSMUSG00000004667.19_79871783_79875492_2	chr10	-	1011	7	FSM	ENSMUSG00000004667.19	ENSMUST00000004786.10	1148	7	137	0	-8	0	multi-exon	FALSE	canonical	3	2552	junction_2	153.800375667797	4353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5652	False	NA	-19	True	ATTAAA	-19	NA	79875492	79871782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416
ENSMUSG00000004667.19_79871783_79875492_3	chr10	-	998	7	NNC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	1073.14979020742	1128	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5652	False	NA	-19	True	ATTAAA	-19	NA	79875492	79871782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_79872136_79872360_79872433_79872597_79872664_79872748_79872808_79873021_79873219_79874272_79874448_79875416
ENSMUSG00000004667.19_79871783_79875546_1	chr10	-	1054	7	NNC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	57	junction_1	1048.82823506362	8490	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5598	False	NA	-19	True	ATTAAA	-19	NA	79875546	79871782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_79872125_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416
ENSMUSG00000004667.19_79871783_79875546_2	chr10	-	423	3	NNC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1504.5	106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5598	False	NA	-19	True	ATTAAA	-19	NA	79875546	79871782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_79871964_79874335_79874448_79875416
ENSMUSG00000004667.19_79871783_79875546_3	chr10	-	1137	6	FSM	ENSMUSG00000004667.19	ENSMUST00000152843.2	900	6	-11	-226	-2	0	multi-exon	FALSE	canonical	3	2552	junction_2	164.012926319848	4628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5598	False	NA	-19	True	ATTAAA	-19	NA	79875546	79871782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_79872136_79872360_79872433_79872597_79872808_79873021_79873219_79874272_79874448_79875416
ENSMUSG00000004667.19_79871783_79875546_4	chr10	-	1054	7	NNC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1056.37998214027	5602	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5598	False	NA	-19	True	ATTAAA	-19	NA	79875546	79871782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874283_79874448_79875416
ENSMUSG00000004667.19_79871783_79875546_5	chr10	-	1059	7	NNC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1062.20206280266	5434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5598	False	NA	-19	True	ATTAAA	-19	NA	79875546	79871782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79872796_79873015_79873219_79874272_79874448_79875416
ENSMUSG00000004667.19_79871783_79875546_6	chr10	-	1053	7	NNC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1062.20206280266	3462	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5598	False	NA	-19	True	ATTAAA	-19	NA	79875546	79871782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79872796_79873021_79873219_79874272_79874448_79875416
ENSMUSG00000004748.6_4041968_4045445_1	chr11	-	923	4	FSM	ENSMUSG00000004748.6	ENSMUST00000004868.6	1411	4	0	488	0	-488	multi-exon	FALSE	canonical	3	154	junction_3	5.18544972870135	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTATAAGTGTTTTACTT	NA	False	NA	-7	True	TTTAAA	-14	NA	4045445	4041967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_4042300_4043800_4044034_4044388_4044517_4045215
ENSMUSG00000004768.15_33758991_33779792_1	chr1	+	2454	8	FSM	ENSMUSG00000004768.15	ENSMUST00000088287.10	4322	8	15	1853	0	0	multi-exon	FALSE	canonical	2	71	junction_6	20.1190335305671	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTGCTTTTCCTTTCTTT	NA	False	NA	8	True	TATAAA	-18	NA	33758990	33779792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_33759255_33760688_33760781_33762866_33763087_33764014_33764101_33773782_33773940_33775880_33775964_33777368_33777462_33778333
ENSMUSG00000004771.13_64623887_64645040_1	chr9	-	834	4	FSM	ENSMUSG00000004771.13	ENSMUST00000171100.2	508	4	-28	-298	0	0	multi-exon	FALSE	canonical	3	7	junction_3	456.48244459368	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATTGTTTACTCTTCAT	NA	False	NA	-4	True	AATAAA	-20	NA	64645040	64623886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_64624271_64632783_64632865_64633905_64634100_64644865
ENSMUSG00000004771.13_64623887_64645040_2	chr9	-	640	3	FSM	ENSMUSG00000004771.13	ENSMUST00000167569.8	726	3	-16	102	0	0	multi-exon	FALSE	canonical	3	23	junction_2	492.5	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATTGTTTACTCTTCAT	NA	False	NA	-4	True	AATAAA	-20	NA	64645040	64623886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_64624271_64632783_64632865_64644865
ENSMUSG00000004771.13_64623988_64645012_2	chr9	-	901	5	FSM	ENSMUSG00000004771.13	ENSMUST00000172298.8	2336	5	28	1407	0	0	multi-exon	FALSE	canonical	3	899	junction_3	39.0160223497988	1814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTTTATAAAATCCTCAAC	NA	False	NA	-29	True	NA	NA	NA	64645012	64623987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_64624271_64632783_64632865_64633905_64634100_64635515_64635712_64644865
ENSMUSG00000004788.12_85266289_85273267_1	chr12	+	1436	8	FSM	ENSMUSG00000004788.12	ENSMUST00000004910.12	1605	8	34	135	0	0	multi-exon	FALSE	canonical	3	336	junction_7	13.1661284657074	1110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGTTCGTTTATTGTTC	NA	False	NA	31	True	AATAAA	-16	NA	85266288	85273267	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_85266499_85266595_85266717_85266870_85267020_85268250_85268415_85269517_85269614_85270154_85270293_85271328_85271396_85272776
ENSMUSG00000004791.8_85213409_85216307_1	chr12	-	863	3	ISM	ENSMUSG00000004791.8	ENSMUST00000220985.2	1226	7	6741	-336	362	0	3prime_fragment	FALSE	canonical	1	3	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTAGGATGTATGTCTTC	NA	False	NA	NA	False	AATAAA	-23	NA	85216307	85213408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_85214189_85216131_85216192_85216284
ENSMUSG00000004843.8_65336645_65359612_1	chr16	-	1241	6	FSM	ENSMUSG00000004843.8	ENSMUST00000004965.8	1872	6	0	631	0	-631	multi-exon	FALSE	canonical	3	234	junction_5	16.0573970493352	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTATCTGTTGCTTGTC	NA	False	NA	-8	True	ATTAAA	-14	NA	65359612	65336644	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_65337137_65337305_65337413_65342162_65342266_65343734_65343930_65347848_65347941_65359360
ENSMUSG00000004846.11_137011044_137016397_1	chr5	+	704	5	NIC	ENSMUSG00000004846.11	novel	2362	14	NA	NA	-4829	-4545	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGGCGGAGTCCCGAGCA	NA	False	NA	NA	False	NA	NA	NA	137011043	137016397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137016342
ENSMUSG00000004846.11_137011044_137016397_2	chr5	+	702	5	NNC	ENSMUSG00000004846.11	novel	2362	14	NA	NA	-4829	-4545	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGGCGGAGTCCCGAGCA	NA	False	NA	NA	False	NA	NA	NA	137011043	137016397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_137011272_137011371_137011542_137011721_137011802_137013732_137013893_137016333
ENSMUSG00000004846.11_137011044_137016397_3	chr5	+	713	5	NNC	ENSMUSG00000004846.11	novel	2362	14	NA	NA	-4829	-4545	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGGCGGAGTCCCGAGCA	NA	False	NA	NA	False	NA	NA	NA	137011043	137016397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137016333
ENSMUSG00000004846.11_137016232_137025393_1	chr5	+	2812	19	FSM	ENSMUSG00000004846.11	ENSMUST00000004968.11	3280	19	359	109	0	-109	multi-exon	FALSE	canonical	3	142	junction_1	18.3673926051335	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGAGTCCGTGAGTCCA	NA	False	NA	13	True	AATAAA	-14	NA	137016231	137025393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_137016658_137016970_137017063_137017188_137017326_137017425_137017590_137017736_137017850_137017979_137018044_137018451_137018550_137018750_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019812_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137022996_137023144_137023786_137023913_137024959
ENSMUSG00000004846.11_137022102_137025393_1	chr5	+	773	4	ISM	ENSMUSG00000004846.11	ENSMUST00000004968.11	3280	19	6229	109	1624	-109	3prime_fragment	FALSE	canonical	3	178	junction_3	5.09901951359278	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGAGTCCGTGAGTCCA	NA	False	NA	13	True	AATAAA	-14	NA	137022101	137025393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_137022168_137022996_137023144_137023786_137023913_137024959
ENSMUSG00000004849.15_137063847_137074896_1	chr5	-	1251	5	NNC	ENSMUSG00000004849.15	novel	1353	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	318.00737019761	4350	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCCTTGGCTTTGTTGG	NA	False	NA	1	True	AATAAA	-25	NA	137074896	137063846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_137064646_137066271_137066410_137070622_137070723_137071917_137072097_137074861
ENSMUSG00000004849.15_137064196_137074896_1	chr5	-	911	5	FSM	ENSMUSG00000004849.15	ENSMUST00000111080.8	1353	5	93	349	0	0	multi-exon	FALSE	canonical	3	639	junction_4	57.0586321252096	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTCTCTCCTCTGCCCC	NA	False	NA	NA	False	TATAAA	-34	NA	137074896	137064195	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_137064646_137066271_137066410_137070622_137070732_137071917_137072097_137074861
ENSMUSG00000004864.14_28988321_28997677_1	chr17	+	1357	12	FSM	ENSMUSG00000004864.14	ENSMUST00000233984.2	2937	12	50	1530	0	199	multi-exon	FALSE	canonical	3	65	junction_6	12.7227264607489	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAATGCCCCTTTTCTGT	NA	False	NA	11	True	NA	NA	NA	28988320	28997677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_28988503_28988984_28989115_28990131_28990191_28994227_28994337_28994527_28994558_28995108_28995157_28995275_28995391_28995475_28995548_28996455_28996536_28996696_28996776_28997050_28997228_28997401
ENSMUSG00000004865.17_28808564_28841425_1	chr17	-	2453	16	FSM	ENSMUSG00000004865.17	ENSMUST00000130643.9	4653	16	258	1942	0	0	multi-exon	FALSE	canonical	3	554	junction_1	86.150875406657	965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGGTTTCTATGCTCAC	NA	False	NA	-2	True	ATTAAA	-39	NA	28841425	28808563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
ENSMUSG00000004880.12_181644107_181669928_1	chr1	-	2287	14	FSM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	16	1207	-2	-1186	multi-exon	FALSE	canonical	3	1956	junction_6	154.844109428974	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTGCTTAGAACAGAATTC	NA	False	NA	NA	False	ATTAAA	-17	NA	181669928	181644106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
ENSMUSG00000004896.17_87826843_87830741_1	chr3	-	930	7	NIC	ENSMUSG00000004896.17	novel	3157	7	NA	NA	1841	3065	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1085	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGAAATTTAGCCAACCG	1574	False	NA	NA	False	NA	NA	NA	87830741	87826842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_87826959_87827109_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000004896.17_87826843_87830741_2	chr3	-	1073	6	NNC	ENSMUSG00000004896.17	novel	3157	7	NA	NA	1841	3065	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2372	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGAAATTTAGCCAACCG	1574	False	NA	NA	False	NA	NA	NA	87830741	87826842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_87827136_87829123_87829356_87829437_87829534_87829694_87829791_87830241_87830373_87830516
ENSMUSG00000004896.17_87826843_87830741_3	chr3	-	896	6	NNC	ENSMUSG00000004896.17	novel	3157	7	NA	NA	1841	3065	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	604	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGAAATTTAGCCAACCG	1574	False	NA	NA	False	NA	NA	NA	87830741	87826842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_87826959_87829123_87829356_87829437_87829534_87829694_87829791_87830241_87830373_87830516
ENSMUSG00000004896.17_87826843_87830741_4	chr3	-	1081	6	NIC	ENSMUSG00000004896.17	novel	3157	7	NA	NA	1841	3065	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3648	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGAAATTTAGCCAACCG	1574	False	NA	NA	False	NA	NA	NA	87830741	87826842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000004896.17_87826843_87830741_5	chr3	-	950	6	NNC	ENSMUSG00000004896.17	novel	3157	7	NA	NA	1841	3065	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1078	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGAAATTTAGCCAACCG	1574	False	NA	NA	False	NA	NA	NA	87830741	87826842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_87827013_87829123_87829356_87829437_87829534_87829694_87829791_87830241_87830373_87830516
ENSMUSG00000004896.17_87826843_87830741_6	chr3	-	904	6	NIC	ENSMUSG00000004896.17	novel	3157	7	NA	NA	1841	3065	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1306	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGAAATTTAGCCAACCG	1574	False	NA	NA	False	NA	NA	NA	87830741	87826842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_87826959_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000004896.17_87826843_87830974_1	chr3	-	1137	6	NIC	ENSMUSG00000004896.17	novel	3157	7	NA	NA	1608	3065	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1925	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGAAATTTAGCCAACCG	1341	False	NA	NA	False	NA	NA	NA	87830974	87826842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_87826959_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000004896.17_87827005_87830741_1	chr3	-	911	6	NNC	ENSMUSG00000004896.17	novel	3157	7	NA	NA	1841	2903	intron_retention	FALSE	non_canonical	0	0	junction_1	0	918	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTCTTTCCACGTGCGT	1574	False	NA	NA	False	NA	NA	NA	87830741	87827004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_87827136_87829123_87829356_87829437_87829534_87829694_87829791_87830241_87830373_87830516
ENSMUSG00000004929.13_80905993_80918054_1	chr10	+	2369	13	FSM	ENSMUSG00000004929.13	ENSMUST00000005057.7	2832	13	124	339	0	-339	multi-exon	TRUE	canonical	3	459	junction_3	51.2387521532504	414	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCCTGGTCCTCTCTCT	5574	False	NA	10	True	ATTAAA	-16	NA	80905992	80918054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80906113_80908986_80909200_80911344_80911494_80912776_80912885_80913746_80913850_80914303_80914465_80915291_80915428_80915704_80916072_80916246_80916449_80916860_80917048_80917140_80917270_80917433_80917571_80917697
ENSMUSG00000004933.18_81093282_81098809_1	chr10	+	1692	13	FSM	ENSMUSG00000004933.18	ENSMUST00000121205.8	1841	13	143	6	0	0	multi-exon	FALSE	canonical	2	4	junction_2	3.15788255358274	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTACAACTGTCTGATG	NA	False	NA	NA	False	CATAAA	-16	NA	81093281	81098809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_81093409_81094313_81094374_81095007_81095122_81095216_81095333_81095420_81095641_81095922_81096017_81096741_81096808_81097276_81097377_81097464_81097550_81097628_81097703_81097794_81097991_81098281_81098369_81098456
ENSMUSG00000004934.15_80989100_81003555_1	chr10	-	2369	11	FSM	ENSMUSG00000004934.15	ENSMUST00000005064.14	2571	11	202	0	-7	0	multi-exon	FALSE	canonical	3	608	junction_2	40.6104666311531	665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGTGGTTTCTCTGTAG	NA	False	NA	2	True	AATAAA	-37	NA	81003555	80989099	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80990207_80990281_80990413_80991424_80991586_80991666_80991741_80992845_80992952_80993060_80993190_80993270_80993362_80993484_80993527_80993766_80993852_80999618_81000025_81003518
ENSMUSG00000004934.15_80989795_81003555_1	chr10	-	1674	11	FSM	ENSMUSG00000004934.15	ENSMUST00000005064.14	2571	11	202	695	-7	274	multi-exon	FALSE	canonical	3	608	junction_2	40.6104666311531	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTACAAAAACAAGAGAAAAT	NA	False	NA	-52	True	ATTAAA	-27	NA	81003555	80989794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80990207_80990281_80990413_80991424_80991586_80991666_80991741_80992845_80992952_80993060_80993190_80993270_80993362_80993484_80993527_80993766_80993852_80999618_81000025_81003518
ENSMUSG00000004937.7_80879911_80896015_1	chr10	-	2177	12	NIC	ENSMUSG00000004937.7	novel	1964	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	99	junction_11	260.894741448927	1445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTCTCTGCTTCCTGT	4769	False	NA	-13	True	AATAAA	-15	NA	80896015	80879910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895751
ENSMUSG00000004945.16_5461372_5490518_1	chr17	-	721	4	FSM	ENSMUSG00000004945.16	ENSMUST00000005053.14	948	4	0	227	0	-227	multi-exon	FALSE	canonical	3	675	junction_1	16.0485374896143	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGGGGGGGGGGGGGGGGC	3468	False	NA	NA	False	AATAAA	-22	NA	5490518	5461371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_5461743_5483716_5483855_5489806_5489908_5490407
ENSMUSG00000004945.16_5483472_5490518_1	chr17	-	595	3	FSM	ENSMUSG00000004945.16	ENSMUST00000185896.2	780	3	13	172	0	-172	multi-exon	FALSE	canonical	3	677	junction_2	16.5	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGTATATTGCTTGA	3468	False	NA	NA	False	AATAAA	-16	NA	5490518	5483471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_5483855_5489806_5489908_5490407
ENSMUSG00000004961.8_4542764_4545126_1	chr7	-	969	3	ISM	ENSMUSG00000004961.8	ENSMUST00000065957.7	1750	8	4440	0	4440	0	3prime_fragment	FALSE	canonical	2	3	junction_1	1	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGGCTCCAGTGCTCCT	2403	False	NA	NA	False	AATAAA	-18	NA	4545126	4542763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_4543298_4544078_4544213_4544825
ENSMUSG00000004980.17_51438101_51446827_1	chr6	-	1529	11	NNC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	2629.2348012302	3153	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51446827	51438100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_51438414_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444166_51444276_51446650
ENSMUSG00000004980.17_51438101_51446827_2	chr6	-	1531	11	NIC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	499	junction_1	2039.79651926363	4405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51446827	51438100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_51438414_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUSG00000004980.17_51438101_51446827_3	chr6	-	1411	10	FSM	ENSMUSG00000004980.17	ENSMUST00000069949.13	1647	10	47	189	0	0	multi-exon	FALSE	canonical	3	499	junction_1	2676.86493431088	2701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51446827	51438100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_51438414_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUSG00000004980.17_51439740_51446827_1	chr6	-	1869	10	ISM	ENSMUSG00000004980.17	ENSMUST00000090002.10	1662	12	-2	1636	0	0	5prime_fragment	FALSE	canonical	3	5712	junction_9	757.172925761462	20821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446827	51439739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUSG00000004980.17_51439740_51446827_2	chr6	-	1629	11	NIC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	874	junction_10	2893.40520667258	19890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446827	51439739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
ENSMUSG00000004980.17_51443952_51446827_1	chr6	-	369	3	ISM	ENSMUSG00000004980.17	ENSMUST00000204188.3	1518	10	-75	4212	0	-1154	5prime_fragment	FALSE	canonical	3	5712	junction_2	1299	1567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCTGCAAGGCCCCATTC	NA	False	NA	NA	False	NA	NA	NA	51446827	51443951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_51444033_51444164_51444276_51446650
ENSMUSG00000004994.13_84984931_84996999_1	chr8	-	1602	10	FSM	ENSMUSG00000004994.13	ENSMUST00000098578.10	2119	10	10	507	0	0	multi-exon	FALSE	canonical	3	143	junction_9	31.8437543540021	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGCCTTGTTTCTAAAC	NA	False	NA	-23	True	ATTAAA	-14	NA	84996999	84984930	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84985556_84985741_84985881_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
ENSMUSG00000005069.13_124390609_124392026_1	chr6	-	347	4	ISM	ENSMUSG00000005069.13	ENSMUST00000080557.12	3073	15	0	16833	0	-9337	5prime_fragment	FALSE	canonical	3	96	junction_3	12.9700509722291	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGACCTTCAAGATGGAT	NA	False	NA	NA	False	NA	NA	NA	124392026	124390608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_124390661_124390965_124391002_124391245_124391410_124391931
ENSMUSG00000005078.17_72132631_72147631_1	chr12	+	1250	8	NNC	ENSMUSG00000005078.17	novel	1292	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	57	junction_1	210.520928233964	4346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCCCGAAAAG	NA	False	NA	NA	False	TATAAA	-23	NA	72132630	72147631	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_72132649_72132686_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ENSMUSG00000005078.17_72132882_72147631_1	chr12	+	1019	7	FSM	ENSMUSG00000005078.17	ENSMUST00000117449.8	1874	7	251	604	251	0	multi-exon	FALSE	canonical	3	133	junction_1	199.890525593942	628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCCCGAAAAG	NA	False	NA	NA	False	TATAAA	-23	NA	72132881	72147631	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_72132958_72136106_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ENSMUSG00000005078.17_72132882_72147631_2	chr12	+	1037	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	251	4	251	0	multi-exon	FALSE	canonical	3	493	junction_1	87.1563091360701	1924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCCCGAAAAG	NA	False	NA	NA	False	TATAAA	-23	NA	72132881	72147631	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ENSMUSG00000005078.17_72132882_72148235_1	chr12	+	1641	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	251	-600	251	0	multi-exon	FALSE	canonical	3	493	junction_1	87.1563091360701	2217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCATGTTCTGATAATTCT	NA	False	NA	14	True	AATAAA	-20	NA	72132881	72148235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ENSMUSG00000005102.14_118219099_118241424_1	chr2	+	665	5	ISM	ENSMUSG00000005102.14	ENSMUST00000110877.8	2134	11	0	17270	0	-17270	5prime_fragment	FALSE	canonical	3	82	junction_2	10.4013220313574	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGGAAATGGCTAAGCAG	NA	False	NA	41	True	NA	NA	NA	118219098	118241424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_118219334_118231015_118231129_118235527_118235631_118238832_118238986_118241363
ENSMUSG00000005142.11_85809938_85812729_1	chr8	+	1203	4	ISM	ENSMUSG00000005142.11	ENSMUST00000034121.11	3822	24	-6	12182	0	11	5prime_fragment	FALSE	canonical	3	217	junction_2	6.48074069840786	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATCTAGGGCTGGAGC	NA	False	NA	NA	False	NA	NA	NA	85809937	85812729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_85810118_85811029_85811133_85811269_85811444_85811983
ENSMUSG00000005148.9_99538815_99550869_1	chr14	+	1219	3	ISM	ENSMUSG00000005148.9	ENSMUST00000005279.8	3352	4	2688	1603	2225	-1603	3prime_fragment	FALSE	canonical	3	3503	junction_2	111	514	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GGAAAAAAAAAAAAAGCAAA	NA	False	NA	NA	False	TTTAAA	-45	NA	99538814	99550869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_99539691_99540853_99540914_99550586
ENSMUSG00000005148.9_99539015_99550869_1	chr14	+	1019	3	ISM	ENSMUSG00000005148.9	ENSMUST00000005279.8	3352	4	2888	1603	2425	-1603	3prime_fragment	FALSE	canonical	3	3503	junction_2	111	384	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GGAAAAAAAAAAAAAGCAAA	NA	False	NA	NA	False	TTTAAA	-45	NA	99539014	99550869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_99539691_99540853_99540914_99550586
ENSMUSG00000005148.9_99539624_99550869_1	chr14	+	410	3	ISM	ENSMUSG00000005148.9	ENSMUST00000005279.8	3352	4	3497	1603	3034	-1603	3prime_fragment	FALSE	canonical	3	3503	junction_2	111	225	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GGAAAAAAAAAAAAAGCAAA	NA	False	NA	NA	False	TTTAAA	-45	NA	99539623	99550869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_99539691_99540853_99540914_99550586
ENSMUSG00000005150.17_85798386_85801791_1	chr8	-	1327	9	NNC	ENSMUSG00000005150.17	novel	1238	9	NA	NA	945	3278	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1651	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCGAGAGCCTTGGGGGC	NA	False	NA	NA	False	NA	NA	NA	85801791	85798385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_85798683_85799080_85799246_85799923_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801483_85801562
ENSMUSG00000005150.17_85798386_85801791_2	chr8	-	1327	9	NNC	ENSMUSG00000005150.17	novel	1238	9	NA	NA	945	3278	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1880	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCGAGAGCCTTGGGGGC	NA	False	NA	NA	False	NA	NA	NA	85801791	85798385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_85798683_85799086_85799246_85799923_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
ENSMUSG00000005150.17_85807602_85808961_1	chr8	-	645	4	NIC	ENSMUSG00000005150.17	novel	2707	5	NA	NA	-1026	-1278	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAACTTCCGGGCGTGGG	NA	False	NA	NA	False	NA	NA	NA	85808961	85807601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_85807693_85807801_85807908_85808405_85808504_85808611
ENSMUSG00000005150.17_85807602_85808961_2	chr8	-	672	4	NNC	ENSMUSG00000005150.17	novel	2707	5	NA	NA	-1026	-1278	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2278	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAACTTCCGGGCGTGGG	NA	False	NA	NA	False	NA	NA	NA	85808961	85807601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_85807693_85807801_85807908_85808405_85808494_85808574
ENSMUSG00000005150.17_85807602_85808961_3	chr8	-	674	4	NNC	ENSMUSG00000005150.17	novel	2707	5	NA	NA	-1026	-1278	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2502	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAACTTCCGGGCGTGGG	NA	False	NA	NA	False	NA	NA	NA	85808961	85807601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_85807685_85807801_85807908_85808405_85808504_85808574
ENSMUSG00000005150.17_85807602_85808961_4	chr8	-	675	4	NNC	ENSMUSG00000005150.17	novel	2707	5	NA	NA	-1026	-1278	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3093	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAACTTCCGGGCGTGGG	NA	False	NA	NA	False	NA	NA	NA	85808961	85807601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_85807693_85807808_85807908_85808405_85808504_85808574
ENSMUSG00000005161.16_85696323_85700946_1	chr8	+	900	6	FSM	ENSMUSG00000005161.16	ENSMUST00000005292.15	1500	6	83	517	0	6	multi-exon	FALSE	canonical	3	3496	junction_3	236.69169820676	35533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTTGGTGTGTGTTT	NA	False	NA	19	True	AATAAA	-19	NA	85696322	85700946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
ENSMUSG00000005161.16_85696323_85700946_2	chr8	+	988	6	FSM	ENSMUSG00000005161.16	ENSMUST00000109734.8	1612	6	107	517	0	6	multi-exon	FALSE	canonical	3	308	junction_1	1434.62463383284	4782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTTGGTGTGTGTTT	NA	False	NA	19	True	AATAAA	-19	NA	85696322	85700946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85696392_85696780_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
ENSMUSG00000005161.16_85696323_85700946_3	chr8	+	895	6	NNC	ENSMUSG00000005161.16	novel	1500	6	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1580.92256609867	16537	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTTGGTGTGTGTTT	NA	False	NA	19	True	AATAAA	-19	NA	85696322	85700946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_85696392_85696868_85696974_85697069_85697219_85697915_85698039_85698190_85698322_85700628
ENSMUSG00000005204.13_69564167_69572737_1	chr11	-	2152	11	FSM	ENSMUSG00000005204.13	ENSMUST00000005336.9	2313	11	-65	226	-65	0	multi-exon	FALSE	canonical	3	762	junction_10	82.7371742326265	661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATAAAAGCAAGCCTCTTT	8465	False	NA	NA	False	NA	NA	NA	69572737	69564166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572488
ENSMUSG00000005233.17_69024239_69036524_1	chr2	-	1349	7	NNC	ENSMUSG00000005233.17	novel	1352	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	321.127700455753	4556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	-10	True	NA	NA	NA	69036524	69024238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035188_69035266_69035369_69035523_69036407
ENSMUSG00000005233.17_69024239_69036524_2	chr2	-	1233	6	NIC	ENSMUSG00000005233.17	novel	1352	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_2	343.043204276079	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	-10	True	NA	NA	NA	69036524	69024238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_69024890_69027478_69027578_69032915_69033063_69035199_69035266_69035369_69035523_69036407
ENSMUSG00000005233.17_69024239_69036524_3	chr2	-	1333	7	NNC	ENSMUSG00000005233.17	novel	1352	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	320.879736903961	4431	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	-10	True	NA	NA	NA	69036524	69024238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_69024890_69027478_69027578_69030328_69030434_69032920_69033063_69035199_69035266_69035369_69035523_69036407
ENSMUSG00000005237.15_69343172_69344510_1	chr11	-	924	2	NNC	ENSMUSG00000005237.15	novel	13569	85	NA	NA	12010	12264	intron_retention	FALSE	non_canonical	0	0	junction_1	0	316	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTTGGAAGTTAGTGCG	6207	False	NA	NA	False	NA	NA	NA	69344510	69343171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_69343301_69343715
ENSMUSG00000005262.14_18631071_18653154_1	chr16	+	1105	12	NNC	ENSMUSG00000005262.14	novel	1996	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	135.750317717236	3294	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTTGTTTAAAGTTACC	NA	False	NA	53	True	NA	NA	NA	18631070	18653154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_18631168_18633579_18633713_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645011_18645053_18645767_18645857_18646385_18646468_18652985
ENSMUSG00000005262.14_18631071_18653154_2	chr16	+	1112	12	FSM	ENSMUSG00000005262.14	ENSMUST00000005394.13	1996	12	27	857	0	0	multi-exon	FALSE	canonical	3	393	junction_10	35.0072011482124	3426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTTGTTTAAAGTTACC	NA	False	NA	53	True	NA	NA	NA	18631070	18653154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18631168_18633579_18633713_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
ENSMUSG00000005299.7_33899661_33918264_1	chr5	-	1484	9	ISM	ENSMUSG00000005299.7	ENSMUST00000005431.6	5272	14	21897	2644	-7358	217	3prime_fragment	FALSE	canonical	3	324	junction_8	49.848363814673	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATTTTTAATTTTCATCA	NA	False	NA	NA	False	AATAAA	-21	NA	33918264	33899660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_33899957_33900985_33901125_33902359_33902548_33903583_33903719_33904719_33904855_33905504_33905646_33906085_33906218_33909835_33909956_33918066
ENSMUSG00000005354.17_77799247_77813174_1	chr15	-	798	5	NIC	ENSMUSG00000005354.17	novel	1298	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	503.602211571792	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGCTGTTCTGTGGGC	2747	False	NA	-5	True	AATAAA	-19	NA	77813174	77799246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_77799437_77799904_77800058_77808742_77808867_77811891_77812155_77813106
ENSMUSG00000005354.17_77799410_77813174_1	chr15	-	1103	4	FSM	ENSMUSG00000005354.17	ENSMUST00000005487.12	1298	4	32	163	0	0	multi-exon	FALSE	canonical	3	1083	junction_2	92.120693778446	1444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTACCTCTTGCTGTGAA	2747	False	NA	-7	True	AATAAA	-16	NA	77813174	77799409	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_77800058_77808742_77808867_77811891_77812155_77813106
ENSMUSG00000005360.15_8664210_8739980_1	chr15	-	3293	10	FSM	ENSMUSG00000005360.15	ENSMUST00000005493.14	4163	10	268	602	0	0	multi-exon	FALSE	canonical	3	39	junction_5	8.52447456836295	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAGATGAATCAGCATGAG	NA	False	NA	NA	False	NA	NA	NA	8739980	8664209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_8665824_8668539_8668675_8671665_8671861_8672383_8672618_8675143_8675437_8679026_8679070_8680332_8680538_8717771_8717910_8738045_8738324_8739822
ENSMUSG00000005360.15_8686659_8739980_1	chr15	-	1013	5	NNC	ENSMUSG00000005360.15	novel	964	3	NA	NA	0	-14919	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	26.9953699733862	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACTTTGCAGCCTGAGAA	NA	False	NA	NA	False	AATAAA	-17	NA	8739980	8686658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_8686996_8717194_8717297_8717771_8717910_8738045_8738324_8739822
ENSMUSG00000005360.15_8710216_8739980_1	chr15	-	1019	4	NIC	ENSMUSG00000005360.15	novel	1252	5	NA	NA	0	-211	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	28.3313724811677	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGGTGTCAGCATCTTT	NA	False	NA	NA	False	AATATA	-10	NA	8739980	8710215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_8710661_8717771_8717910_8738045_8738324_8739822
ENSMUSG00000005360.15_8710376_8739980_1	chr15	-	859	4	NIC	ENSMUSG00000005360.15	novel	1252	5	NA	NA	0	-371	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	28.3313724811677	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCCAACACTGGATAGTT	NA	False	NA	NA	False	ATTAAA	-17	NA	8739980	8710375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_8710661_8717771_8717910_8738045_8738324_8739822
ENSMUSG00000005370.5_88296569_88298320_1	chr17	+	735	5	ISM	ENSMUSG00000005370.5	ENSMUST00000005503.5	4251	10	14079	0	9438	0	3prime_fragment	FALSE	canonical	3	2616	junction_2	148.201509776385	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTTTCCATTTTCTTTC	NA	False	NA	31	True	AATAAA	-20	NA	88296568	88298320	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
ENSMUSG00000005374.14_135178540_135188678_1	chr5	+	1523	7	FSM	ENSMUSG00000005374.14	ENSMUST00000153183.8	7488	7	29	5936	0	3	multi-exon	FALSE	canonical	3	208	junction_3	17.4610678049451	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATATCTCTCTCTCTGTTTC	9519	False	NA	NA	False	NA	NA	NA	135178539	135188678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_135178719_135181788_135181911_135183167_135183353_135185221_135185374_135186385_135186513_135187457_135187611_135188073
ENSMUSG00000005378.18_135081813_135092951_1	chr5	-	1288	12	NNC	ENSMUSG00000005378.18	novel	1516	13	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	302.974373626517	1477	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGGTGTCCCTGGCCCTG	NA	False	NA	-3	True	ATTAAA	-14	NA	135092951	135081812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_135082279_135082402_135082493_135084881_135084941_135085192_135085239_135085700_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135090199_135092737_135092776_135092867
ENSMUSG00000005410.7_75836197_75854325_1	chr8	+	2639	17	FSM	ENSMUSG00000005410.7	ENSMUST00000164309.3	3381	17	0	742	0	4	multi-exon	FALSE	canonical	3	795	junction_1	234.54782794507	3185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGTGTGAATACAAGGT	NA	False	NA	36	True	NA	NA	NA	75836196	75854325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_75836250_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
ENSMUSG00000005410.7_75849695_75854325_1	chr8	+	913	5	ISM	ENSMUSG00000005410.7	ENSMUST00000212811.2	2653	16	13443	-9	0	4	3prime_fragment	FALSE	canonical	3	1697	junction_2	23.1016774282735	799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGTGTGAATACAAGGT	NA	False	NA	36	True	NA	NA	NA	75849694	75854325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
ENSMUSG00000005413.9_75820369_75827218_2	chr8	+	1607	5	NNC	ENSMUSG00000005413.9	novel	1569	5	NA	NA	120	1	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	92.3102784092866	947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAAGTGCATTCATGTCT	NA	False	NA	11	True	AATAAA	-20	NA	75820368	75827218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_75820558_75822483_75822605_75823477_75823970_75825393_75825494_75826513
ENSMUSG00000005447.13_24994474_24997106_1	chr7	-	968	5	FSM	ENSMUSG00000005447.13	ENSMUST00000148150.8	859	5	201	-310	201	0	multi-exon	TRUE	canonical	3	385	junction_2	17.4570902500961	3635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTTCTGCTTTATG	8804	False	NA	-2	True	ATTAAA	-15	NA	24997106	24994473	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796
ENSMUSG00000005447.13_24994588_24997346_1	chr7	-	722	6	FSM	ENSMUSG00000005447.13	ENSMUST00000005583.12	901	6	65	114	0	-114	multi-exon	FALSE	canonical	3	245	junction_5	66.0714764478591	1284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCACTCCTTGCTTCTTCGT	8564	False	NA	NA	False	NA	NA	NA	24997346	24994587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796_24996896_24997267
ENSMUSG00000005465.10_84752704_84756932_1	chr8	-	2472	5	NIC	ENSMUSG00000005465.10	novel	2664	14	NA	NA	12237	4219	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCGAGAGGGGCGGGGC	NA	False	NA	NA	False	GGGGCT	-16	NA	84756932	84752703	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_84752904_84753377_84753521_84753628_84753714_84754754_84754801_84754934
ENSMUSG00000005470.9_84682343_84696826_1	chr8	+	1581	4	FSM	ENSMUSG00000005470.9	ENSMUST00000005607.9	1788	4	207	0	0	0	multi-exon	FALSE	canonical	3	543	junction_2	3.39934634239519	1760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTGCTTTTTTCTCTC	5923	False	NA	23	True	AATAAA	-16	NA	84682342	84696826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_84682567_84691659_84691776_84694462_84694640_84695762
ENSMUSG00000005470.9_84682343_84696826_2	chr8	+	1575	4	NNC	ENSMUSG00000005470.9	novel	1788	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	256.445359135669	1748	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTGCTTTTTTCTCTC	5923	False	NA	23	True	AATAAA	-16	NA	84682342	84696826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_84682567_84691659_84691776_84694462_84694640_84695768
ENSMUSG00000005483.11_84334822_84337599_1	chr8	+	1313	3	FSM	ENSMUSG00000005483.11	ENSMUST00000005620.10	2996	3	0	1683	0	-1683	multi-exon	FALSE	canonical	3	562	junction_2	45.5	917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTAGACTACAGTGGTTT	NA	False	NA	15	True	AATATA	-21	NA	84334821	84337599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_84335172_84336442_84337024_84337217
ENSMUSG00000005483.11_84334822_84338532_1	chr8	+	2246	3	FSM	ENSMUSG00000005483.11	ENSMUST00000005620.10	2996	3	0	750	0	-750	multi-exon	FALSE	canonical	3	562	junction_2	45.5	1231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGAGCAGTCCTTCGACTC	NA	False	NA	10	True	ATTAAA	-19	NA	84334821	84338532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_84335172_84336442_84337024_84337217
ENSMUSG00000005506.17_90770882_90835417_1	chr2	+	1012	7	ISM	ENSMUSG00000005506.17	ENSMUST00000068747.14	7614	14	-6	14425	0	3562	5prime_fragment	FALSE	canonical	3	481	junction_1	98.8399379468307	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAGAATTACCAGTATC	2457	False	NA	NA	False	ATTAAA	-19	NA	90770881	90835417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045
ENSMUSG00000005510.10_90724980_90735046_1	chr2	-	902	7	NNC	ENSMUSG00000005510.10	novel	1046	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	708.12326296737	1397	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	-11	True	AATAAA	-16	NA	90735046	90724979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90732857_90733209_90733289_90734766_90734833_90734927
ENSMUSG00000005510.10_90724980_90735046_2	chr2	-	916	7	NNC	ENSMUSG00000005510.10	novel	1046	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	717.137694046424	7862	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	-11	True	AATAAA	-16	NA	90735046	90724979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_90725222_90728727_90728848_90728985_90729107_90732706_90732857_90733190_90733289_90734766_90734833_90734927
ENSMUSG00000005510.10_90724980_90735046_3	chr2	-	906	7	NNC	ENSMUSG00000005510.10	novel	1046	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	720.247970416362	1349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	-11	True	AATAAA	-16	NA	90735046	90724979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90732857_90733190_90733270_90734762_90734833_90734927
ENSMUSG00000005510.10_90724980_90735046_4	chr2	-	908	7	NNC	ENSMUSG00000005510.10	novel	1046	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	31	junction_2	705.602264420655	3748	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	-11	True	AATAAA	-16	NA	90735046	90724979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_90725222_90728727_90728848_90728993_90729107_90732706_90732857_90733190_90733289_90734766_90734833_90734927
ENSMUSG00000005510.10_90724980_90735046_5	chr2	-	915	7	NNC	ENSMUSG00000005510.10	novel	1046	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	720.247970416362	7088	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	-11	True	AATAAA	-16	NA	90735046	90724979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90732857_90733190_90733279_90734762_90734833_90734927
ENSMUSG00000005510.10_90724980_90735046_6	chr2	-	911	7	NNC	ENSMUSG00000005510.10	novel	1046	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	720.247970416362	4815	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	-11	True	AATAAA	-16	NA	90735046	90724979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90732857_90733190_90733279_90734766_90734833_90734927
ENSMUSG00000005510.10_90724980_90735046_7	chr2	-	1255	6	NIC	ENSMUSG00000005510.10	novel	1046	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	1877	junction_5	23.7941169199447	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	-11	True	AATAAA	-16	NA	90735046	90724979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90733289_90734766_90734833_90734927
ENSMUSG00000005510.10_90724980_90735046_8	chr2	-	913	7	NNC	ENSMUSG00000005510.10	novel	1046	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	720.585641451914	3156	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	-11	True	AATAAA	-16	NA	90735046	90724979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_90725222_90728727_90728848_90728980_90729107_90732714_90732857_90733190_90733289_90734766_90734833_90734927
ENSMUSG00000005514.15_135718012_135764180_1	chr5	+	2514	16	FSM	ENSMUSG00000005514.15	ENSMUST00000005651.13	2636	16	122	0	0	0	multi-exon	FALSE	canonical	3	231	junction_9	23.2776478384069	348	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCTGGTGTTGATTGAG	2023	False	NA	14	True	AATAAA	-14	NA	135718011	135764180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_135718107_135744725_135744918_135757515_135757565_135758252_135758382_135759082_135759233_135759697_135759823_135759946_135760037_135760416_135760516_135761336_135761454_135761539_135761659_135762355_135762538_135762626_135762777_135762880_135763152_135763236_135763383_135763474_135763561_135763666
ENSMUSG00000005566.15_12758729_12764962_1	chr7	+	2595	17	FSM	ENSMUSG00000005566.15	ENSMUST00000005705.8	3245	17	650	0	650	0	multi-exon	FALSE	canonical	3	3307	junction_7	380.550172242439	987	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGCCTCAGCTGTCTG	NA	False	NA	58	True	AATAAA	-19	NA	12758728	12764962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_12758989_12759230_12759344_12759570_12759704_12761543_12761680_12761759_12761877_12761947_12762063_12762334_12762482_12762590_12762706_12762807_12762915_12763014_12763052_12763133_12763180_12763269_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
ENSMUSG00000005575.17_12769165_12771618_1	chr7	-	890	6	FSM	ENSMUSG00000005575.17	ENSMUST00000005714.14	1472	6	582	0	-44	0	multi-exon	FALSE	canonical	3	1870	junction_5	193.215320303541	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCTCTGCCTCTTCCTTC	9025	False	NA	-3	True	ATTAAA	-17	NA	12771618	12769164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_12769682_12769768_12769833_12770138_12770243_12770360_12770400_12770492_12770588_12771547
ENSMUSG00000005609.17_110628202_110630372_1	chr7	+	1139	2	FSM	ENSMUSG00000005609.17	ENSMUST00000146709.2	765	2	-18	-356	0	356	multi-exon	FALSE	canonical	3	174	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCTAATGTTACCTTGAT	543	False	NA	NA	False	NA	NA	NA	110628201	110630372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_110628389_110629420
ENSMUSG00000005610.18_110671139_110682224_1	chr7	-	3800	22	FSM	ENSMUSG00000005610.18	ENSMUST00000162415.9	7995	22	13	4182	0	0	multi-exon	FALSE	canonical	3	4823	junction_9	518.544999107863	2708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	-19	True	AATAAA	-16	NA	110682224	110671138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
ENSMUSG00000005610.18_110680814_110682224_1	chr7	-	260	2	ISM	ENSMUSG00000005610.18	ENSMUST00000162394.2	716	3	-190	1188	0	-690	5prime_fragment	FALSE	canonical	3	5111	junction_1	0	1565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCACCCCATCCATTAAT	NA	False	NA	NA	False	NA	NA	NA	110682224	110680813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_110680841_110681991
ENSMUSG00000005615.16_32249756_32290648_1	chr16	+	1535	9	FSM	ENSMUSG00000005615.16	ENSMUST00000079791.11	4789	9	14	3240	0	-207	multi-exon	FALSE	canonical	3	61	junction_1	11.3880419739304	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTAGAACTAATTTTTT	2503	False	NA	NA	False	AATATA	-1	NA	32249755	32290648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32249850_32270522_32270650_32274029_32274130_32280818_32280936_32281848_32282001_32285257_32285337_32285895_32286039_32288868_32289058_32290114
ENSMUSG00000005615.16_32249756_32290855_1	chr16	+	1742	9	FSM	ENSMUSG00000005615.16	ENSMUST00000079791.11	4789	9	14	3033	0	0	multi-exon	FALSE	canonical	3	61	junction_1	11.3880419739304	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTAGCTCCAGATTCCC	2503	False	NA	NA	False	NA	NA	NA	32249755	32290855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32249850_32270522_32270650_32274029_32274130_32280818_32280936_32281848_32282001_32285257_32285337_32285895_32286039_32288868_32289058_32290114
ENSMUSG00000005625.16_94940239_94949880_1	chr3	-	1053	10	FSM	ENSMUSG00000005625.16	ENSMUST00000107237.8	1332	10	45	234	-17	0	multi-exon	FALSE	canonical	3	1001	junction_3	333.422654699207	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTCCAGGTGTGGATCC	NA	False	NA	NA	False	NA	NA	NA	94949880	94940238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941228_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
ENSMUSG00000005656.10_54793134_54842452_1	chr12	-	1897	14	NNC	ENSMUSG00000005656.10	novel	1928	14	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	298.343255705324	2934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTGAAGGTCTTTTCT	NA	False	NA	-10	True	AATAAA	-20	NA	54842452	54793133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_54793845_54798566_54798653_54798725_54798886_54801074_54801162_54803820_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830794_54830905_54842238_54842287_54842432
ENSMUSG00000005656.10_54793134_54842452_2	chr12	-	1883	13	NNC	ENSMUSG00000005656.10	novel	1928	14	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	316.42543443212	3070	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTGAAGGTCTTTTCT	NA	False	NA	-10	True	AATAAA	-20	NA	54842452	54793133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_54793845_54798566_54798653_54798725_54798886_54801074_54801162_54807152_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
ENSMUSG00000005656.10_54803660_54842452_1	chr12	-	1014	10	NNC	ENSMUSG00000005656.10	novel	1928	14	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	351.32525115449	832	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAATAAAAATT	NA	False	NA	-32	True	NA	NA	NA	54842452	54803659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830794_54830905_54842238_54842287_54842432
ENSMUSG00000005656.10_54803660_54842452_2	chr12	-	1009	10	ISM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	36	10526	-3	0	5prime_fragment	FALSE	canonical	3	826	junction_9	114.99565209172	989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAATAAAAATT	NA	False	NA	-32	True	NA	NA	NA	54842452	54803659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
ENSMUSG00000005656.10_54803660_54842452_4	chr12	-	903	9	NIC	ENSMUSG00000005656.10	novel	1928	14	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	2	20	junction_2	373.523907367387	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAATAAAAATT	NA	False	NA	-32	True	NA	NA	NA	54842452	54803659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_54803861_54807183_54807260_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
ENSMUSG00000005667.9_83282965_83294588_1	chr6	-	1793	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	0	292	0	-292	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	5289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTTGTGTGTCTGTTTT	NA	False	NA	-3	True	TTTAAA	-23	NA	83294588	83282964	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
ENSMUSG00000005667.9_83283384_83294102_1	chr6	-	1392	8	NNC	ENSMUSG00000005667.9	novel	1421	9	NA	NA	433	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_7	880.556062719369	804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGCCGTTTTAGGCTCT	NA	False	NA	NA	False	NA	NA	NA	83294102	83283383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83293906
ENSMUSG00000005667.9_83283384_83294588_1	chr6	-	1366	8	NNC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	900.437784681225	3242	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGCCGTTTTAGGCTCT	NA	False	NA	NA	False	NA	NA	NA	83294588	83283383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83283784_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
ENSMUSG00000005667.9_83283384_83294588_2	chr6	-	1366	8	NNC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	884.031004165878	3679	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGCCGTTTTAGGCTCT	NA	False	NA	NA	False	NA	NA	NA	83294588	83283383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290521_83294410
ENSMUSG00000005674.10_171046680_171050021_1	chr1	-	1550	10	FSM	ENSMUSG00000005674.10	ENSMUST00000005817.9	4712	10	62	3100	-1	-748	multi-exon	FALSE	canonical	3	83	junction_9	16.1314048434171	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCCTGGTTTCTCCATT	9571	False	NA	92	True	AAAAAG	-13	NA	171050021	171046679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472_171049723_171049943
ENSMUSG00000005674.10_171046784_171050021_1	chr1	-	1446	10	FSM	ENSMUSG00000005674.10	ENSMUST00000005817.9	4712	10	62	3204	-1	-852	multi-exon	FALSE	canonical	3	83	junction_9	16.1314048434171	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTGTTATTTTTGTT	9571	False	NA	-12	True	AGTAAA	-41	NA	171050021	171046783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472_171049723_171049943
ENSMUSG00000005681.13_171049346_171053942_1	chr1	+	646	4	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3277	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	24.4176620957499	1094	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCATGCCTCTTGTGTCTT	NA	False	NA	11	True	AATAAA	-17	NA	171049345	171053942	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_171049548_171052855_171052936_171053234_171053368_171053711
ENSMUSG00000005681.13_171049346_171053942_2	chr1	+	681	5	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3277	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	63.2233145287401	890	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCATGCCTCTTGTGTCTT	NA	False	NA	11	True	AATAAA	-17	NA	171049345	171053942	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_171049548_171050883_171050916_171052852_171052936_171053234_171053368_171053711
ENSMUSG00000005681.13_171049468_171053942_1	chr1	+	529	4	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3155	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	63.0467198900061	673	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCATGCCTCTTGTGTCTT	NA	False	NA	11	True	AATAAA	-17	NA	171049467	171053942	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_171049553_171052855_171052936_171053234_171053368_171053711
ENSMUSG00000005681.13_171049468_171053942_2	chr1	+	556	5	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3155	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	60.9631035955356	405	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCATGCCTCTTGTGTCTT	NA	False	NA	11	True	AATAAA	-17	NA	171049467	171053942	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_171049548_171050883_171050916_171052855_171052936_171053234_171053368_171053711
ENSMUSG00000005681.13_171049468_171053942_5	chr1	+	524	4	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3155	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	24.4176620957499	720	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCATGCCTCTTGTGTCTT	NA	False	NA	11	True	AATAAA	-17	NA	171049467	171053942	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_171049548_171052855_171052936_171053234_171053368_171053711
ENSMUSG00000005683.9_128173603_128197152_1	chr10	+	1730	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	0	1196	0	-1196	multi-exon	TRUE	canonical	3	1246	junction_9	132.722869167299	2850	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAGACTTGAAAGACAAAA	NA	False	NA	6	True	ATTAAA	-45	NA	128173602	128197152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
ENSMUSG00000005683.9_128173679_128197083_1	chr10	+	1585	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	76	1265	0	-1265	multi-exon	FALSE	canonical	3	1246	junction_9	132.722869167299	2625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGCCTTTAAGACTTAAGA	NA	False	NA	26	True	AATAAA	-22	NA	128173678	128197083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
ENSMUSG00000005687.15_103079065_103085964_1	chr3	+	869	7	FSM	ENSMUSG00000005687.15	ENSMUST00000005830.15	1467	7	94	504	0	-177	multi-exon	FALSE	canonical	3	3472	junction_4	166.601987449797	1754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGGTTTTCAGAATGAGTA	5023	False	NA	18	True	AATAAA	-36	NA	103079064	103085964	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
ENSMUSG00000005687.15_103079065_103086144_1	chr3	+	1049	7	FSM	ENSMUSG00000005687.15	ENSMUST00000005830.15	1467	7	94	324	0	1	multi-exon	FALSE	canonical	3	3472	junction_4	166.601987449797	9105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGTGTGGCTATAGT	5023	False	NA	49	True	AATAAA	-17	NA	103079064	103086144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
ENSMUSG00000005687.15_103079065_103086144_2	chr3	+	1090	7	FSM	ENSMUSG00000005687.15	ENSMUST00000135017.2	1405	7	-23	338	0	1	multi-exon	FALSE	canonical	3	101	junction_2	1366.36225268249	6707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGTGTGGCTATAGT	5023	False	NA	49	True	AATAAA	-17	NA	103079064	103086144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_103079182_103079263_103079357_103080549_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
ENSMUSG00000005687.15_103079065_103086144_3	chr3	+	1043	7	NNC	ENSMUSG00000005687.15	novel	1467	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1425.34272681657	8093	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGTGTGGCTATAGT	5023	False	NA	49	True	AATAAA	-17	NA	103079064	103086144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103082980_103084654_103084736_103085670
ENSMUSG00000005698.16_106390555_106409554_1	chr8	+	3354	10	ISM	ENSMUSG00000005698.16	ENSMUST00000005841.16	3782	12	27344	0	-12088	0	3prime_fragment	FALSE	canonical	3	206	junction_8	80.3768899898749	341	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAAGACTCCGTCTTTT	NA	False	NA	38	True	AATAAA	-21	NA	106390554	106409554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406702_106406892_106408066
ENSMUSG00000005699.17_106427819_106430128_1	chr8	+	1212	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212634.2	678	3	39	-573	0	0	multi-exon	FALSE	canonical	0	0	junction_1	13	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCCTTCTGTGTCCCA	NA	False	NA	14	True	ATTAAA	-20	NA	106427818	106430128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106427919_106428805_106429029_106429239
ENSMUSG00000005705.11_106293330_106306477_1	chr8	-	774	5	FSM	ENSMUSG00000005705.11	ENSMUST00000194654.2	674	5	0	-100	0	0	multi-exon	FALSE	canonical	1	2	junction_4	1.58113883008419	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTAAAGCTGTGGTTATTT	NA	False	NA	NA	False	AATAAA	-17	NA	106306477	106293329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_106293571_106293751_106293835_106293991_106294125_106294237_106294359_106306281
ENSMUSG00000005718.9_4363326_4377718_1	chr16	-	1446	7	FSM	ENSMUSG00000005718.9	ENSMUST00000005862.9	2247	7	0	801	0	-801	multi-exon	FALSE	canonical	3	103	junction_5	11.6010057035299	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGATGTCATTTGGGTCT	NA	False	NA	NA	False	NA	NA	NA	4377718	4363325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_4363612_4365118_4365275_4367194_4367336_4369093_4369265_4369609_4369709_4369798_4369965_4377291
ENSMUSG00000005732.15_18057648_18066596_1	chr16	-	1079	6	NNC	ENSMUSG00000005732.15	novel	1085	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	436	junction_1	4886.56895582166	22967	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCTGACAAGGCTATGTG	7133	False	NA	-1	True	AATAAA	-22	NA	18066596	18057647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_18058052_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
ENSMUSG00000005732.15_18057841_18066596_1	chr16	-	886	6	NNC	ENSMUSG00000005732.15	novel	1085	6	NA	NA	0	-175	at_least_one_novel_splicesite	FALSE	canonical	3	436	junction_1	4886.56895582166	4473	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCAGGTTGTTTTTTTGT	7133	False	NA	31	True	TATAAA	-15	NA	18066596	18057840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_18058052_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
ENSMUSG00000005732.15_18057841_18066682_1	chr16	-	978	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	-86	193	-86	-175	multi-exon	FALSE	canonical	3	10558	junction_4	1553.51498222579	19680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCAGGTTGTTTTTTTGT	7047	False	NA	31	True	TATAAA	-15	NA	18066682	18057840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
ENSMUSG00000005732.15_18057896_18066516_1	chr16	-	751	6	NNC	ENSMUSG00000005732.15	novel	1085	6	NA	NA	-6	-230	at_least_one_novel_splicesite	FALSE	canonical	3	436	junction_1	4886.56895582166	212	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTGTTTTTCTGTTTTGT	7213	False	NA	-24	True	TTTAAA	-20	NA	18066516	18057895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_18058052_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
ENSMUSG00000005779.13_94791633_94794272_1	chr3	-	954	7	FSM	ENSMUSG00000005779.13	ENSMUST00000005923.7	1183	7	0	229	0	0	multi-exon	FALSE	canonical	3	1538	junction_1	134.402380931292	20158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTTGGATTTTGTGTTT	NA	False	NA	-3	True	AATAAA	-21	NA	94794272	94791632	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_94791752_94791981_94792071_94792227_94792345_94792970_94793053_94793385_94793533_94793751_94793959_94794079
ENSMUSG00000005813.13_138164717_138195143_1	chr3	-	2553	11	FSM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	133	0	-14	0	multi-exon	FALSE	canonical	3	305	junction_4	33.5143252953121	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACTTTTTCTAGTTGTA	NA	False	NA	-9	True	ATTAAA	-15	NA	138195143	138164716	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_138166262_138168125_138168192_138171984_138172129_138174594_138174727_138177911_138178051_138179664_138179749_138180747_138180840_138184630_138184692_138186448_138186562_138188827_138188880_138195018
ENSMUSG00000005813.13_138165895_138195143_1	chr3	-	1375	11	FSM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	133	1178	-14	-453	multi-exon	FALSE	canonical	3	305	junction_4	33.5143252953121	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGCCTCACCCCCTCA	NA	False	NA	-2	True	AATAAA	-25	NA	138195143	138165894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_138166262_138168125_138168192_138171984_138172129_138174594_138174727_138177911_138178051_138179664_138179749_138180747_138180840_138184630_138184692_138186448_138186562_138188827_138188880_138195018
ENSMUSG00000005813.13_138165895_138195276_1	chr3	-	1508	11	FSM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	0	1178	0	-453	multi-exon	FALSE	canonical	3	305	junction_4	33.5143252953121	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGCCTCACCCCCTCA	NA	False	NA	-2	True	AATAAA	-25	NA	138195276	138165894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_138166262_138168125_138168192_138171984_138172129_138174594_138174727_138177911_138178051_138179664_138179749_138180747_138180840_138184630_138184692_138186448_138186562_138188827_138188880_138195018
ENSMUSG00000005846.13_11010834_11021140_1	chr16	-	1881	9	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1178.39859555246	3182	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	1009	False	NA	-3	True	ATTAAA	-25	NA	11021140	11010833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_11011602_11012323_11012576_11014137_11014252_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
ENSMUSG00000005846.13_11010834_11021140_2	chr16	-	1881	9	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1194.64136224015	4432	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	1009	False	NA	-3	True	ATTAAA	-25	NA	11021140	11010833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_11011602_11012323_11012567_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
ENSMUSG00000005846.13_11010834_11021140_3	chr16	-	1883	9	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1172.26895378151	2176	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	1009	False	NA	-3	True	ATTAAA	-25	NA	11021140	11010833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_11011595_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
ENSMUSG00000005846.13_11010834_11021140_4	chr16	-	1876	9	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1194.85699981211	1698	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	1009	False	NA	-3	True	ATTAAA	-25	NA	11021140	11010833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_11011602_11012323_11012562_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
ENSMUSG00000005846.13_11010834_11021195_1	chr16	-	1936	9	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1194.64136224015	5679	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	954	False	NA	-3	True	ATTAAA	-25	NA	11021195	11010833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_11011602_11012323_11012567_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
ENSMUSG00000005846.13_11010834_11021195_2	chr16	-	1938	9	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1172.26895378151	4003	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	954	False	NA	-3	True	ATTAAA	-25	NA	11021195	11010833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_11011595_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
ENSMUSG00000005846.13_11014000_11021140_1	chr16	-	1008	7	ISM	ENSMUSG00000005846.13	ENSMUST00000119953.2	1945	9	55	3166	-12	308	5prime_fragment	FALSE	canonical	0	0	junction_6	1034.40943967507	223	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTTCAGGCTTATT	1009	False	NA	0	True	AATAAA	-24	NA	11021140	11013999	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
ENSMUSG00000005873.7_34480045_34506429_1	chr18	-	613	4	NIC	ENSMUSG00000005873.7	novel	2852	5	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_2	233.445687235573	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTTTGCCTTTGTTGTC	5554	False	NA	-5	True	ATTAAA	-18	NA	34506429	34480044	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_-_34480222_34482687_34482857_34505457_34505552_34506256
ENSMUSG00000005873.7_34480045_34506429_2	chr18	-	748	5	NNC	ENSMUSG00000005873.7	novel	2852	5	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	229.130284990876	4517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTTTGCCTTTGTTGTC	5554	False	NA	-5	True	ATTAAA	-18	NA	34506429	34480044	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_34480222_34482687_34482857_34490144_34490276_34505453_34505552_34506256
ENSMUSG00000005873.7_34480045_34506429_3	chr18	-	743	5	NNC	ENSMUSG00000005873.7	novel	2852	5	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	239.394026658979	4494	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTTTGCCTTTGTTGTC	5554	False	NA	-5	True	ATTAAA	-18	NA	34506429	34480044	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_34480213_34482687_34482857_34490144_34490284_34505457_34505552_34506256
ENSMUSG00000005873.7_34480045_34506429_4	chr18	-	752	5	FSM	ENSMUSG00000005873.7	ENSMUST00000006027.7	2852	5	-7	2107	-7	0	multi-exon	FALSE	canonical	3	477	junction_1	38.3495436739474	4784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTTTGCCTTTGTTGTC	5554	False	NA	-5	True	ATTAAA	-18	NA	34506429	34480044	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_34480222_34482687_34482857_34490144_34490284_34505457_34505552_34506256
ENSMUSG00000005881.14_155850026_155860199_1	chr2	+	1310	13	NNC	ENSMUSG00000005881.14	novel	1377	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	249.477272957322	3188	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTCTCAGTGTGATT	NA	False	NA	16	True	AATAAA	-19	NA	155850025	155860199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_155850149_155850284_155850356_155850483_155850566_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
ENSMUSG00000005881.14_155850026_155860199_3	chr2	+	1309	13	NNC	ENSMUSG00000005881.14	novel	1377	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	249.477272957322	3185	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTCTCAGTGTGATT	NA	False	NA	16	True	AATAAA	-19	NA	155850025	155860199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_155850149_155850284_155850356_155850483_155850572_155850786_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
ENSMUSG00000005881.14_155850143_155860199_1	chr2	+	1199	13	FSM	ENSMUSG00000005881.14	ENSMUST00000006035.13	1377	13	178	0	0	0	multi-exon	FALSE	canonical	3	758	junction_4	74.7846445171437	684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTCTCAGTGTGATT	NA	False	NA	16	True	AATAAA	-19	NA	155850142	155860199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_155850149_155850284_155850356_155850483_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
ENSMUSG00000005882.19_155688814_155763647_1	chr2	-	2362	9	ISM	ENSMUSG00000005882.19	ENSMUST00000109636.11	2633	10	8583	-27	8291	0	3prime_fragment	FALSE	canonical	3	315	junction_1	50.5809993970068	965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTCCTGGAATGGATGGA	NA	False	NA	-31	True	AATAAA	-20	NA	155763647	155688813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554
ENSMUSG00000005882.19_155689867_155771970_1	chr2	-	1347	10	FSM	ENSMUSG00000005882.19	ENSMUST00000109636.11	2633	10	260	1026	0	0	multi-exon	FALSE	canonical	3	315	junction_1	57.3294572333165	1382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTTTTTCTTTGTTCCA	NA	False	NA	-4	True	ATTAAA	-20	NA	155771970	155689866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554_155763648_155771932
ENSMUSG00000005882.19_155689867_155771970_5	chr2	-	1342	10	NIC	ENSMUSG00000005882.19	novel	2633	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	141.20434365368	800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTTTTTCTTTGTTCCA	NA	False	NA	-4	True	ATTAAA	-20	NA	155771970	155689866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753665_155753757_155763554_155763648_155771932
ENSMUSG00000005882.19_155690179_155771970_3	chr2	-	1035	10	FSM	ENSMUSG00000005882.19	ENSMUST00000109636.11	2633	10	260	1338	0	0	multi-exon	FALSE	canonical	3	315	junction_1	57.3294572333165	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGTGTTGAGTTTCTTCT	NA	False	NA	-10	True	NA	NA	NA	155771970	155690178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554_155763648_155771932
ENSMUSG00000005893.15_92151098_92160975_1	chr6	+	1442	4	NIC	ENSMUSG00000005893.15	novel	1174	3	NA	NA	9940	9700	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	8813	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCGCGGACCAGCGCGGC	NA	False	NA	NA	False	NA	NA	NA	92151097	92160975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_92152190_92152689_92152778_92155690_92155798_92160820
ENSMUSG00000005907.15_3646371_3660227_1	chr5	+	1547	8	ISM	ENSMUSG00000005907.15	ENSMUST00000121291.8	4555	24	305	27005	0	4106	5prime_fragment	FALSE	canonical	3	59	junction_7	8.71311467541538	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAAGGAAAAACTGTGT	NA	False	NA	NA	False	AAAAAG	-5	NA	3646370	3660227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_3646518_3653231_3653376_3654795_3654880_3655433_3655549_3655646_3656411_3657666_3657787_3659853_3659978_3660178
ENSMUSG00000005936.20_29171445_29186905_1	chr17	+	2186	7	FSM	ENSMUSG00000005936.20	ENSMUST00000118762.9	3853	7	49	1618	0	0	multi-exon	FALSE	canonical	3	347	junction_1	75.1962247870345	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTCTCTCCAGTATTGAA	NA	False	NA	4	True	AATAAA	-15	NA	29171444	29186905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29171544_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
ENSMUSG00000005936.20_29171445_29186905_2	chr17	+	2365	8	FSM	ENSMUSG00000005936.20	ENSMUST00000233197.2	4196	8	213	1618	0	0	multi-exon	FALSE	canonical	3	151	junction_2	164.609370626217	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTCTCTCCAGTATTGAA	NA	False	NA	4	True	AATAAA	-15	NA	29171444	29186905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29171544_29176852_29177032_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
ENSMUSG00000005947.12_73029226_73038272_1	chr11	+	811	5	ISM	ENSMUSG00000005947.12	ENSMUST00000006101.4	3845	31	47817	0	47817	0	3prime_fragment	FALSE	canonical	3	28	junction_3	3.24037034920393	371	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTTGTTTGAGACA	NA	False	NA	9	True	ATTAAA	-18	NA	73029225	73038272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_73029338_73029592_73029689_73031492_73031589_73036366_73036478_73037876
ENSMUSG00000005947.12_73029226_73038272_2	chr11	+	715	4	NIC	ENSMUSG00000005947.12	novel	3845	31	NA	NA	47817	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	15.369522511198	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTTGTTTGAGACA	NA	False	NA	9	True	ATTAAA	-18	NA	73029225	73038272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_73029338_73029592_73029689_73036366_73036478_73037876
ENSMUSG00000005947.12_73029226_73038272_4	chr11	+	715	4	NIC	ENSMUSG00000005947.12	novel	3845	31	NA	NA	47817	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_1	12.9614813968157	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTTGTTTGAGACA	NA	False	NA	9	True	ATTAAA	-18	NA	73029225	73038272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_73029338_73031492_73031589_73036366_73036478_73037876
ENSMUSG00000005968.15_94520064_94665453_1	chr3	-	2521	12	Fusion	ENSMUSG00000081355.2_ENSMUSG00000005968.15	novel	2631	13	NA	NA	-30	0	multi-exon	FALSE	non_canonical	3	14	junction_10	28.4119634911332	211	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCCCGTGGGTCTTTTA	NA	False	NA	-5	True	AATAAA	-16	NA	94665453	94520063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94629191_94629282_94630124_94630212_94640266_94640369_94665341
ENSMUSG00000005973.7_105217274_105229664_1	chr2	-	2082	6	FSM	ENSMUSG00000005973.7	ENSMUST00000006128.7	2720	6	0	638	0	0	multi-exon	FALSE	canonical	3	1454	junction_3	103.827549330609	4289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCATGTGTCTTGTGGTGT	NA	False	NA	-4	True	AATAAA	-19	NA	105229664	105217273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_105218372_105219321_105219522_105222314_105222376_105223933_105224113_105225023_105225218_105229314
ENSMUSG00000005973.7_105217530_105229664_1	chr2	-	1826	6	FSM	ENSMUSG00000005973.7	ENSMUST00000006128.7	2720	6	0	894	0	-256	multi-exon	FALSE	canonical	3	1454	junction_3	103.827549330609	1129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGGTGGGTCTGTTTTTTT	NA	False	NA	-11	True	AATATA	-26	NA	105229664	105217529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_105218372_105219321_105219522_105222314_105222376_105223933_105224113_105225023_105225218_105229314
ENSMUSG00000005973.7_105217690_105229664_1	chr2	-	1666	6	FSM	ENSMUSG00000005973.7	ENSMUST00000006128.7	2720	6	0	1054	0	-416	multi-exon	FALSE	canonical	3	1454	junction_3	103.827549330609	689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTGTTTTGTTTTTAAC	NA	False	NA	-23	True	AATAAA	-14	NA	105229664	105217689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_105218372_105219321_105219522_105222314_105222376_105223933_105224113_105225023_105225218_105229314
ENSMUSG00000005980.16_3857835_3895662_1	chr16	+	2286	18	NNC	ENSMUSG00000005980.16	novel	1286	10	NA	NA	841	37774	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1512	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTAACAGCCTAACAGAGT	NA	False	NA	NA	False	NA	NA	NA	3857834	3895662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886881_3895556
ENSMUSG00000005980.16_3857835_3895662_2	chr16	+	2284	18	NNC	ENSMUSG00000005980.16	novel	1286	10	NA	NA	841	37774	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1512	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTAACAGCCTAACAGAGT	NA	False	NA	NA	False	NA	NA	NA	3857834	3895662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886727_3886886_3895556
ENSMUSG00000005980.16_3857835_3895662_3	chr16	+	2284	18	NNC	ENSMUSG00000005980.16	novel	1286	10	NA	NA	841	37774	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1519	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTAACAGCCTAACAGAGT	NA	False	NA	NA	False	NA	NA	NA	3857834	3895662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874200_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
ENSMUSG00000005983.16_3702532_3722634_1	chr16	-	2375	7	NNC	ENSMUSG00000005983.16	novel	2592	3	NA	NA	2881	10511	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGCCCCGCGGCACTTCCG	736	False	NA	NA	False	NA	NA	NA	3722634	3702531	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718742_3719646_3720000_3721329
ENSMUSG00000006005.19_150269135_150279739_1	chr1	+	769	6	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	134	45947	0	8493	5prime_fragment	FALSE	canonical	3	468	junction_4	38.2758409443868	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATGAAATTCTGGAACT	NA	False	NA	NA	False	NA	NA	NA	150269134	150279739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625
ENSMUSG00000006005.19_150269135_150290453_1	chr1	+	2183	17	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	134	35233	0	739	5prime_fragment	FALSE	canonical	3	414	junction_6	52.1970051224206	183	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGACAGTGAGAAACTTCAA	NA	False	NA	NA	False	TATAAA	-11	NA	150269134	150290453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730_150285929_150287651_150287760_150288641_150288869_150289394_150289559_150290166_150290301_150290416
ENSMUSG00000006005.19_150316190_150325686_1	chr1	+	1219	10	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	47189	0	0	0	3prime_fragment	TRUE	canonical	3	550	junction_1	68.4469696503869	285	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTTTTCTTCATTTCA	NA	False	NA	25	True	AATAAA	-24	NA	150316189	150325686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_150316281_150317809_150317995_150318934_150319004_150319085_150319181_150320118_150320226_150321618_150321715_150321835_150321993_150323262_150323382_150324893_150324990_150325482
ENSMUSG00000006005.19_150324949_150325686_1	chr1	+	245	2	ISM	ENSMUSG00000006005.19	ENSMUST00000130779.2	229	3	327	-144	327	0	3prime_fragment	FALSE	canonical	3	790	junction_1	0	214	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTTTTCTTCATTTCA	5520	False	NA	25	True	AATAAA	-24	NA	150324948	150325686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_150324990_150325482
ENSMUSG00000006010.15_150238272_150268501_1	chr1	-	1689	14	NIC	ENSMUSG00000006010.15	novel	3273	14	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_12	29.9368170945323	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTAGTGCTATTGAACC	963	False	NA	NA	False	NA	NA	NA	150268501	150238271	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264371_150265986_150266108_150268440
ENSMUSG00000006021.6_15853820_15855735_1	chr7	+	1396	4	ISM	ENSMUSG00000006021.6	ENSMUST00000006178.5	1630	12	0	5706	0	286	5prime_fragment	FALSE	canonical	3	83	junction_1	1.88561808316413	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAAGTGGGTTCATTTGC	NA	False	NA	NA	False	AAAAAG	-1	NA	15853819	15855735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_15854107_15854414_15854498_15854636_15854722_15854794
ENSMUSG00000006024.14_15832533_15851053_1	chr7	+	1515	11	NNC	ENSMUSG00000006024.14	novel	2517	11	NA	NA	0	389	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	375.327643532954	2929	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGAGCTGTCCCTTT	NA	False	NA	30	True	AATAAA	-20	NA	15832532	15851053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508_15846556_15847041_15847115_15847274_15847331_15847400_15847486_15848045_15848151_15849127_15849197_15849524_15849576_15850388
ENSMUSG00000006024.14_15832533_15851053_2	chr7	+	1514	11	NNC	ENSMUSG00000006024.14	novel	2517	11	NA	NA	0	389	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	378.363793193799	2919	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGAGCTGTCCCTTT	NA	False	NA	30	True	AATAAA	-20	NA	15832532	15851053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508_15846556_15847036_15847115_15847274_15847331_15847400_15847486_15848045_15848151_15849127_15849197_15849524_15849576_15850394
ENSMUSG00000006050.13_36800299_36803343_1	chr18	-	883	5	NNC	ENSMUSG00000006050.13	novel	1979	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	616.079946110892	6341	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCTGATGTCAGACTG	NA	False	NA	-9	True	NA	NA	NA	36803343	36800298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_36800713_36800843_36800953_36801704_36801896_36803056_36803183_36803300
ENSMUSG00000006050.13_36800299_36803343_2	chr18	-	889	5	FSM	ENSMUSG00000006050.13	ENSMUST00000173875.9	1979	5	525	565	0	0	multi-exon	FALSE	canonical	3	1172	junction_4	156.810992918226	7458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCTGATGTCAGACTG	NA	False	NA	-9	True	NA	NA	NA	36803343	36800298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803056_36803183_36803300
ENSMUSG00000006050.13_36800299_36803343_3	chr18	-	883	5	FSM	ENSMUSG00000006050.13	ENSMUST00000006209.5	695	5	-5	-183	0	0	multi-exon	FALSE	canonical	3	109	junction_2	590.993443280042	5498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCTGATGTCAGACTG	NA	False	NA	-9	True	NA	NA	NA	36803343	36800298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_36800713_36800843_36800947_36801704_36801902_36803056_36803183_36803300
ENSMUSG00000006050.13_36800299_36803343_4	chr18	-	1007	4	FSM	ENSMUSG00000006050.13	ENSMUST00000173202.3	1299	4	318	-26	0	0	multi-exon	FALSE	canonical	3	1470	junction_2	40.4227658628155	1415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCTGATGTCAGACTG	NA	False	NA	-9	True	NA	NA	NA	36803343	36800298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803056
ENSMUSG00000006056.14_95990428_96002788_1	chr11	-	1343	6	FSM	ENSMUSG00000006056.14	ENSMUST00000068686.13	1621	6	2	276	0	-276	multi-exon	FALSE	canonical	3	294	junction_5	66.2751838926155	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGAAAAAATTGATTGTTA	4213	False	NA	NA	False	AAGAAA	-1	NA	96002788	95990427	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_95991229_95993473_95993579_95994042_95994177_95994283_95994387_95998256_95998431_96002762
ENSMUSG00000006057.16_95963816_95966496_1	chr11	-	577	5	FSM	ENSMUSG00000006057.16	ENSMUST00000090541.12	4715	5	0	4138	0	0	multi-exon	FALSE	canonical	3	2808	junction_4	3276.79938163751	85137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCATGTGCCTGTGCCT	3479	False	NA	-9	True	NA	NA	NA	95966496	95963815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966452
ENSMUSG00000006058.11_95925777_95938256_1	chr11	+	964	8	NNC	ENSMUSG00000006058.11	novel	1004	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	239.782895000235	4407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTTCCCCCAGTAT	3263	False	NA	21	True	AATAAA	-43	NA	95925776	95938256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_95925894_95926144_95926196_95930104_95930244_95932450_95932556_95934229_95934329_95935986_95936129_95937105_95937181_95938020
ENSMUSG00000006095.13_29923562_29931136_1	chr7	-	657	5	NIC	ENSMUSG00000006095.13	novel	1416	6	NA	NA	561	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_2	370.740728137603	667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTTGTGCAAGTCTCTT	NA	False	NA	-11	True	NA	NA	NA	29931136	29923561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_29923773_29923897_29923971_29927028_29927126_29930550_29930695_29931004
ENSMUSG00000006095.13_29923562_29931194_1	chr7	-	907	6	FSM	ENSMUSG00000006095.13	ENSMUST00000006254.6	1416	6	503	6	503	0	multi-exon	FALSE	canonical	3	839	junction_4	26.4529771481397	8129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTTGTGCAAGTCTCTT	NA	False	NA	-11	True	NA	NA	NA	29931194	29923561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_29923773_29923897_29923971_29926268_29926461_29927028_29927126_29930550_29930695_29931004
ENSMUSG00000006095.13_29923562_29931194_2	chr7	-	858	6	NIC	ENSMUSG00000006095.13	novel	1416	6	NA	NA	503	0	combination_of_known_junctions	FALSE	canonical	3	99	junction_2	312.712391823541	5818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTTGTGCAAGTCTCTT	NA	False	NA	-11	True	NA	NA	NA	29931194	29923561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_29923773_29923897_29923971_29926317_29926461_29927028_29927126_29930550_29930695_29931004
ENSMUSG00000006127.10_75521855_75538747_1	chr11	+	1688	12	FSM	ENSMUSG00000006127.10	ENSMUST00000006286.9	2679	12	41	950	0	57	multi-exon	FALSE	canonical	3	99	junction_6	22.5527847321246	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGTGATTGAAACAGAGTA	5480	False	NA	31	True	AATACA	-16	NA	75521854	75538747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_75522024_75523894_75524003_75524288_75524398_75527769_75527887_75528235_75528412_75528970_75529083_75530281_75530392_75536253_75536444_75537611_75537750_75538018_75538103_75538227_75538333_75538477
ENSMUSG00000006154.14_4481616_4482403_1	chr7	+	699	2	ISM	ENSMUSG00000006154.14	ENSMUST00000164987.2	676	4	951	-160	951	0	3prime_fragment	FALSE	canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGCTCCTCGCTCTTC	832	False	NA	NA	False	NA	NA	NA	4481615	4482403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_4481751_4481839
ENSMUSG00000006179.10_22186343_22190611_1	chr13	-	1566	5	FSM	ENSMUSG00000006179.10	ENSMUST00000150547.3	1159	5	-29	-378	-29	0	multi-exon	FALSE	canonical	2	4	junction_2	4.63680924774785	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTCTCTGCTGTGACT	NA	False	NA	NA	False	NA	NA	NA	22190611	22186342	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_22186981_22187095_22187242_22187315_22187496_22189260_22189403_22190151
ENSMUSG00000006191.18_30019939_30039626_2	chr13	-	1711	6	FSM	ENSMUSG00000006191.18	ENSMUST00000129231.2	694	6	22	-1039	0	1039	multi-exon	FALSE	canonical	3	9	junction_1	95.4136258612993	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTATAGAAATGTGTGC	NA	False	NA	NA	False	AATAAA	-16	NA	30039626	30019938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_30021054_30022497_30022686_30030210_30030324_30033921_30034092_30038880_30038925_30039545
ENSMUSG00000006200.4_36915924_36918734_1	chrX	+	873	4	FSM	ENSMUSG00000006200.4	ENSMUST00000006362.4	1010	4	137	0	137	0	multi-exon	FALSE	canonical	3	92	junction_1	47.588514020367	2172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGCTCCATTGTCTTGG	NA	False	NA	14	True	AATAAA	-18	NA	36915923	36918734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_36916057_36916242_36916703_36917291_36917338_36918500
ENSMUSG00000006215.13_141171995_141174931_1	chr4	+	489	2	ISM	ENSMUSG00000006215.13	ENSMUST00000144899.2	338	3	-22	11709	0	-11709	5prime_fragment	FALSE	canonical	3	179	junction_1	0	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAGAAAAATCCTGGTAG	NA	False	NA	NA	False	NA	NA	NA	141171994	141174931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_141172114_141174561
ENSMUSG00000006215.13_141193692_141194536_1	chr4	+	650	3	ISM	ENSMUSG00000006215.13	ENSMUST00000130482.2	867	7	966	-156	966	0	3prime_fragment	FALSE	canonical	3	182	junction_1	5.5	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCCTGTGGTCCCTGTG	19	False	NA	5	True	AATAAA	-15	NA	141193691	141194536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_141193869_141193984_141194075_141194153
ENSMUSG00000006216.11_141131664_141135644_1	chr4	-	832	6	NIC	ENSMUSG00000006216.11	novel	2370	20	NA	NA	-2976	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_2	42.4235783497809	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGTGTCCCCTCTCCTCCC	4159	False	NA	-4	True	AATAAA	-18	NA	141135644	141131663	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_141131944_141132063_141132151_141132582_141132672_141134399_141134534_141135114_141135329_141135616
ENSMUSG00000006216.11_141131664_141135644_3	chr4	-	939	7	NNC	ENSMUSG00000006216.11	novel	2370	20	NA	NA	-2976	0	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_6	35.5387112878337	371	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGTGTCCCCTCTCCTCCC	4159	False	NA	-4	True	AATAAA	-18	NA	141135644	141131663	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_141131944_141132063_141132151_141132362_141132447_141132582_141132672_141134399_141134534_141135114_141135329_141135593
ENSMUSG00000006219.13_141303373_141325535_1	chr4	-	3070	9	NIC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_8	503.602134005606	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	-4	True	AATAAA	-14	NA	141325535	141303372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141325424
ENSMUSG00000006219.13_141304612_141327199_1	chr4	-	1761	9	FSM	ENSMUSG00000006219.13	ENSMUST00000105784.8	3036	9	36	1239	0	-1239	multi-exon	FALSE	canonical	3	1168	junction_5	205.258944689385	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTTGGATTTGGGGGA	NA	False	NA	-34	True	NA	NA	NA	141327199	141304611	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
ENSMUSG00000006241.17_21832322_21838852_1	chr9	+	625	4	NNC	ENSMUSG00000006241.17	novel	1531	13	NA	NA	-6445	-2449	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	82	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCTGAGCGGAGTGAACG	5770	False	NA	NA	False	NA	NA	NA	21832321	21838852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_21832646_21837286_21837451_21837544_21837654_21838824
ENSMUSG00000006273.15_69541420_69565357_1	chr8	+	1697	14	FSM	ENSMUSG00000006273.15	ENSMUST00000006435.8	2825	14	122	1006	0	-1006	multi-exon	FALSE	canonical	3	1214	junction_12	88.1479391228044	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTGCCAGTGTTGACA	NA	False	NA	15	True	ATTAAA	-17	NA	69541419	69565357	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_69541581_69548871_69548928_69554016_69554116_69554587_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081
ENSMUSG00000006273.15_69541420_69566363_1	chr8	+	2703	14	FSM	ENSMUSG00000006273.15	ENSMUST00000006435.8	2825	14	122	0	0	0	multi-exon	FALSE	canonical	3	1214	junction_12	88.1479391228044	1562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAAATGACTCTGTGTTT	NA	False	NA	18	True	AATAAA	-22	NA	69541419	69566363	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_69541581_69548871_69548928_69554016_69554116_69554587_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081
ENSMUSG00000006276.11_73094845_73175299_1	chr8	-	2781	22	NNC	ENSMUSG00000006276.11	novel	2686	22	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	96.4251028182741	97	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAACATGAGACTATCTT	NA	False	NA	NA	False	TATAAA	-37	NA	73175299	73094844	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_73095369_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135332_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ENSMUSG00000006281.9_51061523_51067528_1	chr14	-	1487	10	ISM	ENSMUSG00000006281.9	ENSMUST00000006444.9	8171	55	40489	7	0	0	3prime_fragment	FALSE	canonical	3	29	junction_7	7.57187779440036	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAGAGTGTATGCCCGAT	NA	False	NA	-11	True	TATAAA	-17	NA	51067528	51061522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51064367_51064512_51064657_51066361_51066487_51066624_51066762_51067119_51067250_51067328
ENSMUSG00000006281.9_51061523_51067528_2	chr14	-	1566	9	ISM	ENSMUSG00000006281.9	ENSMUST00000006444.9	8171	55	40489	7	0	0	intron_retention	FALSE	canonical	3	29	junction_7	7.91260860904923	97	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAGAGTGTATGCCCGAT	NA	False	NA	-11	True	TATAAA	-17	NA	51067528	51061522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51064367_51064512_51064657_51066361_51066487_51066624_51066762_51067119
ENSMUSG00000006288.9_51014576_51022976_1	chr14	-	721	4	FSM	ENSMUSG00000006288.9	ENSMUST00000226768.2	2366	4	-24	1669	0	-1019	multi-exon	FALSE	canonical	3	834	junction_3	1.69967317119759	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGTGCATGGTGTATGC	NA	False	NA	NA	False	TTTAAA	-27	NA	51022976	51014575	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_51014870_51015213_51015426_51018931_51019065_51022894
ENSMUSG00000006289.15_51153143_51162308_1	chr14	-	1282	11	NIC	ENSMUSG00000006289.15	novel	3388	11	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_9	186.264355151489	2150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATTAGGTTGTGTTTTTC	NA	False	NA	-5	True	AATAAA	-20	NA	51162308	51153142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154688_51154768_51154910_51154961_51155292_51155389_51157072_51157277_51157386_51157507_51162120
ENSMUSG00000006289.15_51153143_51162308_2	chr14	-	1254	11	FSM	ENSMUSG00000006289.15	ENSMUST00000159292.8	3388	11	42	2092	-8	0	multi-exon	FALSE	canonical	3	62	junction_9	170.895289578151	2298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATTAGGTTGTGTTTTTC	NA	False	NA	-5	True	AATAAA	-20	NA	51162308	51153142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154688_51154768_51154910_51154961_51155292_51155389_51157072_51157249_51157386_51157507_51162120
ENSMUSG00000006289.15_51153245_51162308_1	chr14	-	1152	11	FSM	ENSMUSG00000006289.15	ENSMUST00000159292.8	3388	11	42	2194	-8	0	multi-exon	FALSE	canonical	3	62	junction_9	170.895289578151	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGCCCTCTTCGCTGACA	NA	False	NA	-107	True	NA	NA	NA	51162308	51153244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154688_51154768_51154910_51154961_51155292_51155389_51157072_51157249_51157386_51157507_51162120
ENSMUSG00000006301.18_74327410_74343374_1	chr1	-	2181	12	NNC	ENSMUSG00000006301.18	novel	11011	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	38.8406364690682	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACCCTTGAGTTGCTGTG	NA	False	NA	-10	True	AATAAA	-18	NA	74343374	74327409	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066_74333162_74334356_74334592_74343277
ENSMUSG00000006304.15_74275709_74307163_1	chr1	+	1181	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113820.9	1439	11	53	205	0	16	multi-exon	FALSE	canonical	3	1389	junction_1	306.215936881149	1609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCACTTGATCAACTTAAT	7881	False	NA	34	True	ATTAAA	-14	NA	74275708	74307163	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_74275770_74275976_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
ENSMUSG00000006304.15_74275709_74307368_1	chr1	+	1381	10	NNC	ENSMUSG00000006304.15	novel	1439	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	741.807419020314	5319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGAATTTGTTGATTTT	7881	False	NA	14	True	AATAAA	-19	NA	74275708	74307368	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_74275770_74275976_74276059_74287260_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
ENSMUSG00000006304.15_74275709_74307368_2	chr1	+	1534	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113819.2	1313	11	0	-221	0	0	multi-exon	FALSE	canonical	3	31	junction_2	696.999605451825	5258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGAATTTGTTGATTTT	7881	False	NA	14	True	AATAAA	-19	NA	74275708	74307368	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_74275770_74275976_74276207_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
ENSMUSG00000006310.11_30289106_30298334_1	chr7	-	1874	6	NIC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_4	21.6277599394852	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30298334	30289105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290481_30291391_30298204
ENSMUSG00000006310.11_30289106_30302239_1	chr7	-	894	5	NNC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	-3905	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	33.9512518178638	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30302239	30289105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30302180
ENSMUSG00000006311.9_30333041_30334186_1	chr7	-	481	3	ISM	ENSMUSG00000006311.9	ENSMUST00000108147.3	1048	6	1091	0	1091	0	3prime_fragment	FALSE	canonical	3	44	junction_1	1	235	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCGAACCTGCGTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	30334186	30333040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_30333260_30333413_30333527_30334037
ENSMUSG00000006313.6_30302517_30306428_1	chr7	-	944	4	ISM	ENSMUSG00000006313.6	ENSMUST00000006476.6	1421	8	5844	0	5844	0	3prime_fragment	FALSE	canonical	3	18	junction_3	10.6144555520604	255	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGCAGAGGAGCTTGTT	7751	False	NA	-8	True	AATAAA	-10	NA	30306428	30302516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_30303068_30303196_30303281_30304485_30304666_30306299
ENSMUSG00000006313.6_30302517_30307216_1	chr7	-	1169	6	NNC	ENSMUSG00000006313.6	novel	1421	8	NA	NA	5056	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	12.5698050899765	285	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGCAGAGGAGCTTGTT	6963	False	NA	-8	True	AATAAA	-10	NA	30307216	30302516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_30303068_30303196_30303281_30304485_30304666_30306299_30306408_30306555_30306631_30307045
ENSMUSG00000006313.6_30302517_30309476_1	chr7	-	1314	7	NNC	ENSMUSG00000006313.6	novel	1421	8	NA	NA	2796	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_6	11.4661337085446	328	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGCAGAGGAGCTTGTT	4703	False	NA	-8	True	AATAAA	-10	NA	30309476	30302516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_30303068_30303196_30303281_30304485_30304666_30306299_30306408_30306555_30306631_30309038_30309240_30309361
ENSMUSG00000006315.10_30427126_30428938_1	chr7	-	919	6	FSM	ENSMUSG00000006315.10	ENSMUST00000209065.2	727	6	-192	0	-4	0	multi-exon	FALSE	canonical	3	791	junction_1	3.48711915483254	6168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTATGTCCATCTCTCT	9284	False	NA	-12	True	AGTAAA	-18	NA	30428938	30427125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428142_30428626
ENSMUSG00000006333.15_3707041_3709896_1	chr7	+	876	6	NIC	ENSMUSG00000006333.15	novel	751	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	206	junction_4	6461.44068764854	115948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1313	False	NA	3	True	AATAAA	-18	NA	3707040	3709896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709006_3709181_3709649
ENSMUSG00000006335.17_3623323_3632583_1	chr7	-	791	6	FSM	ENSMUSG00000006335.17	ENSMUST00000155592.8	1091	6	300	0	-5	0	multi-exon	FALSE	canonical	3	96	junction_1	68.2800117164606	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTCTAGGTCACCGTT	NA	False	NA	-1	True	AATAAA	-16	NA	3632583	3623322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_3623474_3623775_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
ENSMUSG00000006335.17_3623323_3632883_1	chr7	-	1115	6	NNC	ENSMUSG00000006335.17	novel	1166	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	106.182107720651	1825	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTCTAGGTCACCGTT	NA	False	NA	-1	True	AATAAA	-16	NA	3632883	3623322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_3623468_3623745_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
ENSMUSG00000006344.18_75446250_75451021_1	chr10	+	581	2	ISM	ENSMUSG00000006344.18	ENSMUST00000218807.2	2051	11	20815	0	6335	0	3prime_fragment	FALSE	canonical	1	1	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATTTGGTGGTTCTAAGC	NA	False	NA	NA	False	ATTAAA	-19	NA	75446249	75451021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_75446373_75450563
ENSMUSG00000006345.11_75399982_75422025_1	chr10	+	2199	15	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	109.844161410238	473	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGGACTTTAGTGTCT	NA	False	NA	27	True	NA	NA	NA	75399981	75422025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_75400093_75400671_75400744_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ENSMUSG00000006356.11_113104192_113109126_1	chr12	+	1098	7	NNC	ENSMUSG00000006356.11	novel	1439	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	281.572617434453	1999	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCAGTGTCGTGTGTGTG	5958	False	NA	30	True	AATAAA	-23	NA	113104191	113109126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_113104235_113107083_113107232_113107634_113107776_113107848_113107918_113108018_113108114_113108429_113108488_113108582
ENSMUSG00000006356.11_113104192_113109126_2	chr12	+	1103	7	FSM	ENSMUSG00000006356.11	ENSMUST00000084882.9	1439	7	336	0	0	0	multi-exon	FALSE	canonical	3	743	junction_5	14.1745076340121	2915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCAGTGTCGTGTGTGTG	5958	False	NA	30	True	AATAAA	-23	NA	113104191	113109126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_113104235_113107078_113107232_113107634_113107776_113107848_113107918_113108018_113108114_113108429_113108488_113108582
ENSMUSG00000006356.11_113104192_113109126_3	chr12	+	1098	7	NNC	ENSMUSG00000006356.11	novel	1439	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	282.521975546446	2234	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCAGTGTCGTGTGTGTG	5958	False	NA	30	True	AATAAA	-23	NA	113104191	113109126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_113104235_113107078_113107232_113107634_113107776_113107848_113107918_113108023_113108114_113108429_113108488_113108582
ENSMUSG00000006360.12_113115440_113117499_1	chr12	+	639	5	FSM	ENSMUSG00000006360.12	ENSMUST00000006523.12	445	5	-192	-2	-192	0	multi-exon	FALSE	canonical	3	402	junction_4	13.838352503098	4579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTGTTTTTGTCTGCT	NA	False	NA	15	True	AATAAA	-15	NA	113115439	113117499	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_113115774_113116900_113116996_113117074_113117133_113117237_113117285_113117394
ENSMUSG00000006360.12_113115440_113117499_2	chr12	+	458	6	NNC	ENSMUSG00000006360.12	novel	445	5	NA	NA	-192	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	168.854256683093	2971	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTGTTTTTGTCTGCT	NA	False	NA	15	True	AATAAA	-15	NA	113115439	113117499	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_113115521_113115701_113115774_113116900_113116996_113117074_113117133_113117237_113117285_113117394
ENSMUSG00000006369.15_85123496_85136086_1	chr15	+	942	5	ISM	ENSMUSG00000006369.15	ENSMUST00000109432.4	2273	15	33290	0	-24159	0	3prime_fragment	FALSE	canonical	3	356	junction_4	44.6227240315963	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTTGTACCTTGGTTT	NA	False	NA	35	True	AATAAA	-25	NA	85123495	85136086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_85123621_85124820_85124941_85126211_85126344_85128383_85128508_85135645
ENSMUSG00000006373.11_35861859_35868640_1	chrX	+	765	3	FSM	ENSMUSG00000006373.11	ENSMUST00000073339.7	1857	3	0	1092	0	-1092	multi-exon	FALSE	canonical	3	454	junction_1	42	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTGAACTTGCTGTAAAT	1668	False	NA	NA	False	NA	NA	NA	35861858	35868640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_35862268_35865773_35865930_35868440
ENSMUSG00000006373.11_35861859_35868710_1	chrX	+	835	3	FSM	ENSMUSG00000006373.11	ENSMUST00000073339.7	1857	3	0	1022	0	-1022	multi-exon	FALSE	canonical	3	454	junction_1	42	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGATGTGTTTGTATGT	1668	False	NA	NA	False	GATAAA	-18	NA	35861858	35868710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_35862268_35865773_35865930_35868440
ENSMUSG00000006378.16_78915101_78921662_1	chr15	+	1444	9	NNC	ENSMUSG00000006378.16	novel	2370	9	NA	NA	27	-891	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	433.666634640019	2814	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTCAGTCTGCTTTATTC	659	False	NA	14	True	NA	NA	NA	78915100	78921662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78919604_78919984_78920132_78920219_78920303_78920466_78920639_78920952_78921075_78921342
ENSMUSG00000006378.16_78915101_78921662_2	chr15	+	1452	9	FSM	ENSMUSG00000006378.16	ENSMUST00000006544.9	2370	9	27	891	27	-891	multi-exon	FALSE	canonical	3	1189	junction_6	75.224663508719	2836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTCAGTCTGCTTTATTC	659	False	NA	14	True	NA	NA	NA	78915100	78921662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78919604_78919976_78920132_78920219_78920303_78920466_78920639_78920952_78921075_78921342
ENSMUSG00000006390.16_118290098_118294549_1	chr4	+	1787	10	NNC	ENSMUSG00000006390.16	novel	1811	8	NA	NA	3200	4399	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2795	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTCAAAACCCAACTGTC	213	False	NA	NA	False	NA	NA	NA	118290097	118294549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_118290339_118290677_118290796_118291947_118292074_118292675_118292899_118292973_118293069_118293165_118293363_118293456_118293586_118293706_118293804_118293890_118294040_118294137
ENSMUSG00000006390.16_118290098_118294549_2	chr4	+	1787	10	NNC	ENSMUSG00000006390.16	novel	1811	8	NA	NA	3200	4399	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTCAAAACCCAACTGTC	213	False	NA	NA	False	NA	NA	NA	118290097	118294549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_118290339_118290677_118290796_118291947_118292074_118292669_118292899_118292973_118293054_118293156_118293363_118293456_118293586_118293706_118293804_118293890_118294040_118294137
ENSMUSG00000006390.16_118290098_118294549_4	chr4	+	1781	10	NNC	ENSMUSG00000006390.16	novel	1811	8	NA	NA	3200	4399	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1440	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTCAAAACCCAACTGTC	213	False	NA	NA	False	NA	NA	NA	118290097	118294549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_118290339_118290677_118290796_118291959_118292074_118292669_118292899_118292973_118293069_118293165_118293363_118293456_118293586_118293706_118293804_118293890_118294040_118294137
ENSMUSG00000006392.17_118266552_118272308_1	chr4	+	1319	7	NIC	ENSMUSG00000006392.17	novel	1145	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	242.454577647489	3122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	False	NA	32	True	NA	NA	NA	118266551	118272308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_118266747_118268081_118268201_118268854_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
ENSMUSG00000006392.17_118266552_118272308_2	chr4	+	1166	7	NIC	ENSMUSG00000006392.17	novel	1134	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_3	261.843093389067	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	False	NA	32	True	NA	NA	NA	118266551	118272308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_118266584_118268081_118268201_118268894_118269050_118269548_118269690_118269860_118269943_118270823_118271073_118271920
ENSMUSG00000006392.17_118266552_118272308_3	chr4	+	1138	7	NNC	ENSMUSG00000006392.17	novel	1145	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_2	250.334054592836	3506	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	False	NA	32	True	NA	NA	NA	118266551	118272308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_118266584_118268081_118268201_118268872_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
ENSMUSG00000006392.17_118266552_118272308_4	chr4	+	1110	7	NNC	ENSMUSG00000006392.17	novel	1134	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	289.137462502219	1057	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	False	NA	32	True	NA	NA	NA	118266551	118272308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_118266584_118268087_118268201_118268894_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
ENSMUSG00000006398.16_118290098_118294549_1	chr4	-	1788	10	NNC	ENSMUSG00000006398.16	novel	1793	10	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	516.884494105708	2662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCCAGCATCCTTCCTAC	NA	False	NA	-11	True	AATAAA	-17	NA	118294549	118290097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_118290330_118290673_118290796_118291947_118292074_118292669_118292899_118292973_118293069_118293165_118293363_118293456_118293586_118293706_118293804_118293890_118294040_118294137
ENSMUSG00000006412.11_171173238_171185738_1	chr1	+	645	4	NNC	ENSMUSG00000006412.11	novel	1735	4	NA	NA	0	200	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_3	941.834144398872	33831	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATAGCCTGAACCTTTAT	NA	False	NA	29	True	NA	NA	NA	171173237	171185738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_171173355_171184097_171184187_171184272_171184397_171185423
ENSMUSG00000006412.11_171173238_171185738_2	chr1	+	651	4	FSM	ENSMUSG00000006412.11	ENSMUST00000135941.8	1735	4	0	1084	0	200	multi-exon	FALSE	canonical	3	1860	junction_3	112.860779527503	36059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATAGCCTGAACCTTTAT	NA	False	NA	29	True	NA	NA	NA	171173237	171185738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_171173355_171184097_171184187_171184272_171184397_171185417
ENSMUSG00000006418.18_167345366_167357057_1	chr2	+	1109	6	FSM	ENSMUSG00000006418.18	ENSMUST00000078050.7	2502	6	357	1036	0	-1027	multi-exon	FALSE	canonical	3	578	junction_2	31.1088411870323	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCCTTGGTTCTGCAGTT	NA	False	NA	NA	False	AATAAA	-27	NA	167345365	167357057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_167345522_167348966_167349118_167352795_167352903_167353131_167353247_167354436_167354545_167356585
ENSMUSG00000006418.18_167345366_167358086_1	chr2	+	1052	7	NNC	ENSMUSG00000006418.18	novel	3001	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_6	219.784490404173	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTAAGCTGCAATGTTTT	NA	False	NA	17	True	AATAAA	-18	NA	167345365	167358086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_167345522_167348966_167349118_167352795_167352903_167353131_167353247_167354436_167354545_167356585_167356701_167357786
ENSMUSG00000006418.18_167345366_167358086_2	chr2	+	2138	6	FSM	ENSMUSG00000006418.18	ENSMUST00000078050.7	2502	6	357	7	0	0	multi-exon	FALSE	canonical	3	578	junction_2	31.1088411870323	712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTAAGCTGCAATGTTTT	NA	False	NA	17	True	AATAAA	-18	NA	167345365	167358086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_167345522_167348966_167349118_167352795_167352903_167353131_167353247_167354436_167354545_167356585
ENSMUSG00000006423.16_36078421_36127891_1	chrX	-	1275	7	NIC	ENSMUSG00000006423.16	novel	678	3	NA	NA	0	8969	combination_of_known_splicesites	FALSE	canonical	3	30	junction_1	75.5389891968968	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAAGAGCTGTTTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	36127891	36078420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_36078984_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
ENSMUSG00000006423.16_36091031_36127834_1	chrX	-	1520	7	NNC	ENSMUSG00000006423.16	novel	678	3	NA	NA	-8	-3641	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	84.3374504923854	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGCGTTTTACAGCCT	NA	False	NA	NA	False	AATAAA	-18	NA	36127834	36091030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_36091896_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
ENSMUSG00000006435.17_47228787_47246234_1	chr19	+	850	3	NIC	ENSMUSG00000006435.17	novel	4158	6	NA	NA	11437	-1640	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	55.5	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCCTGGAGGATTGGGCT	NA	False	NA	NA	False	ATTAAA	-14	NA	47228786	47246234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_47229111_47245150_47245298_47245855
ENSMUSG00000006435.17_47241893_47246234_1	chr19	+	881	3	ISM	ENSMUSG00000006435.17	ENSMUST00000111807.5	3606	6	24543	1640	24543	-1640	3prime_fragment	FALSE	canonical	3	77	junction_1	18.5	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCCTGGAGGATTGGGCT	1556	False	NA	NA	False	ATTAAA	-14	NA	47241892	47246234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_47242248_47245150_47245298_47245855
ENSMUSG00000006442.11_148676211_148679076_1	chr4	+	1087	7	FSM	ENSMUSG00000006442.11	ENSMUST00000006611.9	1338	7	251	0	-164	0	multi-exon	FALSE	canonical	3	3072	junction_6	112.657297440808	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCATTTTTGTTCCTA	8967	False	NA	28	True	AATACA	-36	NA	148676210	148679076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_148676244_148676500_148676622_148676938_148677032_148677744_148677899_148678224_148678455_148678539_148678663_148678743
ENSMUSG00000006442.11_148676951_148679076_1	chr4	+	921	5	ISM	ENSMUSG00000006442.11	ENSMUST00000006611.9	1338	7	991	0	576	0	3prime_fragment	FALSE	canonical	3	3072	junction_4	109.529676343902	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCATTTTTGTTCCTA	9707	False	NA	28	True	AATACA	-36	NA	148676950	148679076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_148677032_148677744_148677899_148678224_148678455_148678539_148678663_148678743
ENSMUSG00000006445.4_141049395_141056695_1	chr4	+	1723	6	ISM	ENSMUSG00000006445.4	ENSMUST00000006614.3	3913	17	20844	0	5171	0	3prime_fragment	FALSE	canonical	3	136	junction_1	9.48683298050514	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCTTTCATTCCTGGA	NA	False	NA	8	True	AATAAA	-22	NA	141049394	141056695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_141049436_141049513_141049724_141049896_141050047_141050723_141050918_141051542_141051699_141055723
ENSMUSG00000006463.14_4928732_4934538_3	chr19	+	1637	3	FSM	ENSMUSG00000006463.14	ENSMUST00000162720.8	2523	3	0	886	0	711	multi-exon	FALSE	canonical	0	0	junction_1	82.5	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTATTATTGTAAAGAGAAT	NA	False	NA	9	True	AATAAA	-18	NA	4928731	4934538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4929056_4930148_4930427_4933503
ENSMUSG00000006469.14_25118910_25121360_1	chr2	-	1154	5	ISM	ENSMUSG00000006469.14	ENSMUST00000006638.8	2183	13	3016	0	1698	0	3prime_fragment	FALSE	canonical	2	3	junction_2	0.866025403784439	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGAGTGTTGGCTTTCTCTC	NA	False	NA	NA	False	AATAAA	-15	NA	25121360	25118909	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_25119528_25120584_25120710_25120784_25120902_25120987_25121156_25121234
ENSMUSG00000006498.17_79690467_79700195_2	chr10	+	2755	13	FSM	ENSMUSG00000006498.17	ENSMUST00000165704.8	3169	13	4	410	0	2	multi-exon	FALSE	canonical	3	638	junction_7	276.779833782898	985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1589	False	NA	33	True	ATTAAA	-17	NA	79690466	79700195	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ENSMUSG00000006498.17_79690467_79700195_3	chr10	+	2744	12	NNC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	0	2	intron_retention	FALSE	canonical	0	0	junction_1	517.067270269035	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1589	False	NA	33	True	ATTAAA	-17	NA	79690466	79700195	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79690556_79694565_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ENSMUSG00000006519.12_123151515_123159647_1	chr8	-	719	6	NNC	ENSMUSG00000006519.12	novel	744	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	332.179830814575	10405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGGACAAGAAATTCTCCAT	NA	False	NA	NA	False	AATAAA	-18	NA	123159647	123151514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_123151827_123152924_123153007_123153674_123153752_123153963_123154043_123154393_123154464_123159548
ENSMUSG00000006575.15_102288433_102293381_1	chr11	+	1630	10	ISM	ENSMUSG00000006575.15	ENSMUST00000006750.8	2046	11	4204	0	-257	0	3prime_fragment	FALSE	canonical	3	171	junction_6	29.8663690461362	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTTCATCTGTTGGAGA	3226	False	NA	14	True	AATAAA	-16	NA	102288432	102293381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_102288513_102288910_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292806
ENSMUSG00000006576.17_75533860_75535727_1	chr1	+	672	3	ISM	ENSMUSG00000006576.17	ENSMUST00000027415.12	3926	23	10720	-193	5507	193	3prime_fragment	FALSE	canonical	3	11	junction_1	3.5	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGCCTCATTTTCTTGG	8866	False	NA	NA	False	NA	NA	NA	75533859	75535727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_75534087_75534270_75534445_75535456
ENSMUSG00000006589.9_123301374_123303661_1	chr8	-	881	5	NNC	ENSMUSG00000006589.9	novel	849	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	617.095414016342	24402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTCTCCTCAGTTTGT	NA	False	NA	-5	True	AATAAA	-17	NA	123303661	123301373	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_123301767_123301875_123301955_123302140_123302269_123303249_123303361_123303491
ENSMUSG00000006638.16_31107410_31112435_1	chr5	+	1191	8	NIC	ENSMUSG00000006638.16	novel	1352	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	6	junction_1	24.272265183597	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTGAGGTTCCCTTTCC	NA	False	NA	19	True	ATTAAA	-21	NA	31107409	31112435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_31107593_31110686_31110870_31111010_31111057_31111222_31111336_31111434_31111610_31111748_31111798_31111877_31112044_31112159
ENSMUSG00000006641.13_31193381_31205346_1	chr5	-	3081	18	NIC	ENSMUSG00000006641.13	novel	3078	18	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	63	junction_17	22.1293773649543	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTGGCCTCTGTGTTCC	810	False	NA	-2	True	AATAAA	-18	NA	31205346	31193380	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31205309
ENSMUSG00000006641.13_31205656_31211967_1	chr5	-	965	7	NIC	ENSMUSG00000006641.13	novel	3436	18	NA	NA	-5699	-5217	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	178	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGCGCTGGGACCCGGGA	8592	False	NA	NA	False	AGTAAA	-4	NA	31211967	31205655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_31205777_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
ENSMUSG00000006641.13_31205992_31211967_1	chr5	-	942	7	NNC	ENSMUSG00000006641.13	novel	3218	18	NA	NA	-5699	-5553	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1624	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTCGCGAGAACCGAGCG	8592	False	NA	NA	False	NA	NA	NA	31211967	31205991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_31206101_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211392_31211606
ENSMUSG00000006641.13_31205992_31211967_2	chr5	-	948	7	NNC	ENSMUSG00000006641.13	novel	3218	18	NA	NA	-5699	-5553	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1664	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTCGCGAGAACCGAGCG	8592	False	NA	NA	False	NA	NA	NA	31211967	31205991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_31206101_31206805_31206925_31209545_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
ENSMUSG00000006641.13_31205992_31211967_4	chr5	-	856	7	NIC	ENSMUSG00000006641.13	novel	3218	18	NA	NA	-5699	-5553	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTCGCGAGAACCGAGCG	8592	False	NA	NA	False	NA	NA	NA	31211967	31205991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_31206101_31206805_31206828_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
ENSMUSG00000006649.18_30181165_30186660_1	chr7	+	849	5	ISM	ENSMUSG00000006649.18	ENSMUST00000149086.2	752	9	3875	-354	-3175	12	3prime_fragment	FALSE	canonical	3	56	junction_2	4.89897948556636	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTCCAAGCCAAAGG	NA	False	NA	NA	False	NA	NA	NA	30181164	30186660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
ENSMUSG00000006651.9_30134407_30136461_1	chr7	-	969	5	NNC	ENSMUSG00000006651.9	novel	2343	17	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	210.36218766689	885	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCGTGTTTCTGTTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	30136461	30134406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135500_30136211
ENSMUSG00000006651.9_30134407_30136461_2	chr7	-	972	5	NNC	ENSMUSG00000006651.9	novel	2343	17	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	210.36218766689	858	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCGTGTTTCTGTTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	30136461	30134406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30136177
ENSMUSG00000006651.9_30134407_30136461_3	chr7	-	942	5	NNC	ENSMUSG00000006651.9	novel	2343	17	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	210.36218766689	839	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCGTGTTTCTGTTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	30136461	30134406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30136207
ENSMUSG00000006673.15_108394313_108437364_1	chr9	+	3209	10	FSM	ENSMUSG00000006673.15	ENSMUST00000112155.9	3040	10	4	-173	0	2	multi-exon	FALSE	canonical	3	392	junction_1	89.886485340754	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGGAGAACGTGTCTT	1174	False	NA	66	True	NA	NA	NA	108394312	108437364	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108394440_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
ENSMUSG00000006678.7_92639741_92675761_1	chrX	-	1335	12	ISM	ENSMUSG00000006678.7	ENSMUST00000006856.3	5346	37	0	291368	0	26941	5prime_fragment	FALSE	canonical	3	379	junction_1	41.8636116868943	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGAAGTTCAAGTCCAAG	4277	False	NA	NA	False	TATAAA	-2	NA	92675761	92639740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_92639838_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
ENSMUSG00000006678.7_92648060_92675761_1	chrX	-	608	7	NNC	ENSMUSG00000006678.7	novel	5346	37	NA	NA	0	18622	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	170.714918309248	470	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTACTGGGGCTTTGCTC	4277	False	NA	NA	False	AAGAAA	-5	NA	92675761	92648059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675681
ENSMUSG00000006678.7_92648060_92675761_2	chrX	-	615	7	ISM	ENSMUSG00000006678.7	ENSMUST00000006856.3	5346	37	0	299687	0	18622	5prime_fragment	FALSE	canonical	3	401	junction_2	32.1645076995678	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTACTGGGGCTTTGCTC	4277	False	NA	NA	False	AAGAAA	-5	NA	92675761	92648059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
ENSMUSG00000006699.18_137048135_137085010_1	chr4	-	959	6	FSM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	21	1128	0	938	multi-exon	FALSE	canonical	3	1589	junction_5	116.347067002138	7505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTGTTGTTTTTTTGTTT	NA	False	NA	1	True	TTTAAA	-25	NA	137085010	137048134	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
ENSMUSG00000006699.18_137048313_137085010_1	chr4	-	781	6	FSM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	21	1306	0	760	multi-exon	FALSE	canonical	3	1589	junction_5	116.347067002138	2279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGACAAACGCCCTGCAC	NA	False	NA	-13	True	NA	NA	NA	137085010	137048312	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
ENSMUSG00000006715.12_24935828_24945913_1	chr13	-	965	7	NIC	ENSMUSG00000006715.12	novel	963	7	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	2	74	junction_5	556.354727968886	16862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCGTGGAGAATTAAGTGT	NA	False	NA	-8	True	AATAAA	-26	NA	24945913	24935827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941652_24944142_24944201_24945795
ENSMUSG00000006717.8_25001931_25015508_1	chr13	-	599	4	NNC	ENSMUSG00000006717.8	novel	721	3	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	123.060960503321	234	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAAGGAAGTATTTTCTTT	4809	False	NA	-3	True	AATAAA	-19	NA	25015508	25001930	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_25002175_25004697_25004883_25015208_25015332_25015461
ENSMUSG00000006717.8_25001931_25015523_1	chr13	-	491	3	NIC	ENSMUSG00000006717.8	novel	721	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	14	junction_2	123	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAAGGAAGTATTTTCTTT	4794	False	NA	-3	True	AATAAA	-19	NA	25015523	25001930	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_25002175_25004697_25004883_25015461
ENSMUSG00000006720.17_22129437_22144655_1	chr13	+	2749	6	FSM	ENSMUSG00000006720.17	ENSMUST00000102978.8	3198	6	155	294	130	0	multi-exon	FALSE	canonical	3	46	junction_1	13.42236938845	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTTAAGTTTCTTCTG	NA	False	NA	12	True	ATTAAA	-16	NA	22129436	22144655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_22129589_22129725_22129970_22131172_22131241_22133829_22133957_22134403_22134500_22142593
ENSMUSG00000006728.13_126899403_126903166_1	chr10	+	1430	8	FSM	ENSMUSG00000006728.13	ENSMUST00000006911.12	2053	8	0	623	0	0	multi-exon	FALSE	canonical	3	4641	junction_3	430.829906300927	22119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTTAATGTTTTTTC	NA	False	NA	29	True	AAAACA	-27	NA	126899402	126903166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
ENSMUSG00000006728.13_126899485_126903166_1	chr10	+	1348	8	FSM	ENSMUSG00000006728.13	ENSMUST00000006911.12	2053	8	82	623	0	0	multi-exon	FALSE	canonical	3	4641	junction_3	430.829906300927	17150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTTAATGTTTTTTC	NA	False	NA	29	True	AAAACA	-27	NA	126899484	126903166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
ENSMUSG00000006732.15_126877826_126881359_1	chr10	+	891	6	FSM	ENSMUSG00000006732.15	ENSMUST00000006915.14	1791	6	25	875	0	-125	multi-exon	FALSE	canonical	3	356	junction_3	29.1245600825146	969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGGCGTGGTGGCGCACG	NA	False	NA	NA	False	NA	NA	NA	126877825	126881359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126881147
ENSMUSG00000006732.15_126877826_126881499_1	chr10	+	1031	6	FSM	ENSMUSG00000006732.15	ENSMUST00000006915.14	1791	6	25	735	0	15	multi-exon	FALSE	canonical	3	356	junction_3	29.1245600825146	1452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTCAGCTCCCCAGGCC	NA	False	NA	NA	False	NA	NA	NA	126877825	126881499	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126881147
ENSMUSG00000006732.15_126877826_126881820_1	chr10	+	1352	6	FSM	ENSMUSG00000006732.15	ENSMUST00000006915.14	1791	6	25	414	0	52	multi-exon	FALSE	canonical	3	356	junction_3	29.1245600825146	1952	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGCTGTGTGTGGCTCAGG	NA	False	NA	3	True	NA	NA	NA	126877825	126881820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126881147
ENSMUSG00000006736.10_126899403_126903166_1	chr10	-	1507	9	NNC	ENSMUSG00000006736.10	novel	1556	6	NA	NA	2103	3746	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACACGTGATCTTCACCC	2806	False	NA	NA	False	NA	NA	NA	126903166	126899402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902456_126902534_126902797
ENSMUSG00000006736.10_126899403_126903166_2	chr10	-	1425	8	NNC	ENSMUSG00000006736.10	novel	1556	6	NA	NA	2103	3746	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9639	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACACGTGATCTTCACCC	2806	False	NA	NA	False	NA	NA	NA	126903166	126899402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_126899629_126900088_126900318_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
ENSMUSG00000006736.10_126899403_126903166_3	chr10	-	1412	7	NNC	ENSMUSG00000006736.10	novel	1556	6	NA	NA	2103	3746	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACACGTGATCTTCACCC	2806	False	NA	NA	False	NA	NA	NA	126903166	126899402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901936_126902106_126902797
ENSMUSG00000006736.10_126899472_126903166_1	chr10	-	1346	8	NNC	ENSMUSG00000006736.10	novel	1556	6	NA	NA	2103	3677	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10907	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACCATGTGACCAGCTG	2806	False	NA	NA	False	NA	NA	NA	126903166	126899471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_126899629_126900088_126900323_126900453_126900575_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
ENSMUSG00000006736.10_126899472_126903166_2	chr10	-	1354	8	NNC	ENSMUSG00000006736.10	novel	1556	6	NA	NA	2103	3677	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6592	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACCATGTGACCAGCTG	2806	False	NA	NA	False	NA	NA	NA	126903166	126899471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901127_126901821_126901873_126901969_126902106_126902797
ENSMUSG00000006736.10_126899472_126903166_3	chr10	-	1331	7	NNC	ENSMUSG00000006736.10	novel	1556	6	NA	NA	2103	3677	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACCATGTGACCAGCTG	2806	False	NA	NA	False	NA	NA	NA	126903166	126899471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901155_126901969_126902106_126902797
ENSMUSG00000006736.10_126899472_126903166_4	chr10	-	1349	8	NNC	ENSMUSG00000006736.10	novel	1556	6	NA	NA	2103	3677	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4376	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACCATGTGACCAGCTG	2806	False	NA	NA	False	NA	NA	NA	126903166	126899471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901122_126901821_126901873_126901969_126902106_126902797
ENSMUSG00000006736.10_126899485_126903166_1	chr10	-	1425	9	NNC	ENSMUSG00000006736.10	novel	1556	6	NA	NA	2103	3664	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCACCCCCACCCTCACC	2806	False	NA	NA	False	NA	NA	NA	126903166	126899484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902456_126902534_126902797
ENSMUSG00000006736.10_126899485_126903166_2	chr10	-	1330	7	NNC	ENSMUSG00000006736.10	novel	1556	6	NA	NA	2103	3664	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCACCCCCACCCTCACC	2806	False	NA	NA	False	NA	NA	NA	126903166	126899484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901936_126902106_126902797
ENSMUSG00000006736.10_126899485_126903166_3	chr10	-	1343	8	NNC	ENSMUSG00000006736.10	novel	1556	6	NA	NA	2103	3664	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5955	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCACCCCCACCCTCACC	2806	False	NA	NA	False	NA	NA	NA	126903166	126899484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_126899629_126900088_126900318_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
ENSMUSG00000006736.10_126903691_126906133_1	chr10	-	1014	6	FSM	ENSMUSG00000006736.10	ENSMUST00000060991.6	1556	6	0	542	0	419	multi-exon	FALSE	canonical	3	545	junction_1	41.1698919114442	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTGGCCTTGCCATCTT	NA	False	NA	NA	False	NA	NA	NA	126906133	126903690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_126904060_126904137_126904252_126904348_126904481_126904776_126904858_126905214_126905383_126905983
ENSMUSG00000006740.15_6202214_6208242_1	chr18	-	1550	2	ISM	ENSMUSG00000006740.15	ENSMUST00000168031.2	1959	9	6298	-875	6298	875	3prime_fragment	TRUE	canonical	3	921	junction_1	0	112	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGACAGGAAGGGTCTC	8673	False	NA	NA	False	NA	NA	NA	6208242	6202213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_-_6203708_6208186
ENSMUSG00000006740.15_6202214_6214583_1	chr18	-	2562	11	ISM	ENSMUSG00000006740.15	ENSMUST00000025083.14	6032	26	26940	1212	-43	875	3prime_fragment	TRUE	canonical	0	0	junction_8	309.68902143925	163	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGACAGGAAGGGTCTC	9493	False	NA	NA	False	NA	NA	NA	6214583	6202213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_-_6203708_6208186_6208336_6208999_6209217_6210699_6210805_6211023_6211096_6211191_6211253_6212516_6212619_6213186_6213297_6213392_6213455_6213969_6214088_6214511
ENSMUSG00000006763.15_46338728_46360075_1	chr7	-	1503	12	FSM	ENSMUSG00000006763.15	ENSMUST00000143082.4	4728	12	29	3196	7	0	multi-exon	FALSE	canonical	3	340	junction_6	40.4362573576105	2167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCATCGGGATGATGGT	NA	False	NA	-12	True	AATAAA	-24	NA	46360075	46338727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_46338880_46339226_46339320_46342202_46342400_46348787_46348977_46349059_46349143_46351204_46351386_46351825_46351942_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
ENSMUSG00000006763.15_46338728_46360075_2	chr7	-	1497	12	NNC	ENSMUSG00000006763.15	novel	4728	12	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	124.198122182741	2106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCATCGGGATGATGGT	NA	False	NA	-12	True	AATAAA	-24	NA	46360075	46338727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_46338880_46339226_46339314_46342202_46342400_46348787_46348977_46349059_46349143_46351204_46351386_46351825_46351942_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
ENSMUSG00000006782.17_100473655_100510446_1	chr11	+	1765	14	Fusion	ENSMUSG00000017837.13_ENSMUSG00000006782.17	novel	1727	4	NA	NA	6938	-5258	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1513	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCCGGGTGGGAGGCAG	NA	False	NA	NA	False	NA	NA	NA	100473654	100510446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr11_+_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487061_100489440_100489555_100490010_100490136_100492553_100492643_100510353
ENSMUSG00000006782.17_100473655_100510446_3	chr11	+	1763	14	Fusion	ENSMUSG00000017837.13_ENSMUSG00000006782.17	novel	1727	4	NA	NA	6938	-5258	multi-exon	FALSE	non_canonical	0	0	junction_1	0	874	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCCGGGTGGGAGGCAG	NA	False	NA	NA	False	NA	NA	NA	100473654	100510446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr11_+_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483688_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
ENSMUSG00000006782.17_100473655_100510446_4	chr11	+	1759	14	Fusion	ENSMUSG00000017837.13_ENSMUSG00000006782.17	novel	1727	4	NA	NA	6938	-5258	multi-exon	FALSE	non_canonical	0	0	junction_1	0	786	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCCGGGTGGGAGGCAG	NA	False	NA	NA	False	NA	NA	NA	100473654	100510446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr11_+_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481724_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
ENSMUSG00000006782.17_100473655_100510446_5	chr11	+	1776	14	Fusion	ENSMUSG00000017837.13_ENSMUSG00000006782.17	novel	1727	4	NA	NA	6938	-5258	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2354	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCCGGGTGGGAGGCAG	NA	False	NA	NA	False	NA	NA	NA	100473654	100510446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr11_+_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486986_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
ENSMUSG00000006782.17_100473877_100510446_1	chr11	+	1549	14	Fusion	ENSMUSG00000017837.13_ENSMUSG00000006782.17	novel	1727	4	NA	NA	7160	-5258	multi-exon	FALSE	non_canonical	0	0	junction_1	0	146	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCCGGGTGGGAGGCAG	NA	False	NA	NA	False	NA	NA	NA	100473876	100510446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr11_+_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
ENSMUSG00000006784.15_100444496_100462789_1	chr11	+	1396	6	NIC	ENSMUSG00000006784.15	novel	2240	12	NA	NA	4123	0	intron_retention	FALSE	canonical	3	29	junction_1	2.60768096208106	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGAGTGACACTGTGC	2545	False	NA	NA	False	ATTAAA	-22	NA	100444495	100462789	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100460681_100460767_100462265
ENSMUSG00000006818.6_13225733_13234241_1	chr17	+	1245	7	NNC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	0	-262	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1532.52225831217	26709	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTGTGTGAATTGCTCT	NA	False	NA	46	True	ATTAAA	-34	NA	13225732	13234241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_13225849_13226330_13226423_13226747_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
ENSMUSG00000006818.6_13225733_13234241_2	chr17	+	1153	6	NIC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	0	-262	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	1288.2053563	26579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTGTGTGAATTGCTCT	NA	False	NA	46	True	ATTAAA	-34	NA	13225732	13234241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_13225849_13226747_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
ENSMUSG00000006818.6_13226746_13234241_1	chr17	+	1039	5	FSM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	42	4780	0	-262	multi-exon	FALSE	canonical	3	3082	junction_4	106.177622406984	26377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTGTGTGAATTGCTCT	NA	False	NA	46	True	ATTAAA	-34	NA	13226745	13234241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
ENSMUSG00000006818.6_13226883_13234503_1	chr17	+	1164	5	FSM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	179	4518	0	0	multi-exon	FALSE	canonical	3	3082	junction_4	106.177622406984	11209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTAGTGGACATCACCTA	NA	False	NA	31	True	ATTAAA	-28	NA	13226882	13234503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
ENSMUSG00000006906.11_83520199_83549431_1	chr6	-	2091	10	FSM	ENSMUSG00000006906.11	ENSMUST00000068054.9	2364	10	280	-7	-10	0	multi-exon	FALSE	canonical	3	22	junction_4	7.14920352984241	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGAGTGATTTGTCTGA	NA	False	NA	-10	True	AATAAA	-20	NA	83549431	83520198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83521019_83524212_83524313_83528925_83529039_83533256_83533395_83534418_83534544_83538656_83539024_83540804_83540901_83541162_83541239_83547284_83547502_83549392
ENSMUSG00000006930.16_100238153_100246913_1	chr11	-	3652	11	FSM	ENSMUSG00000006930.16	ENSMUST00000103124.11	2120	11	0	-1532	0	0	multi-exon	FALSE	canonical	3	486	junction_1	44.9070150421958	714	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTGTCTCAGTTGTGTT	2048	False	NA	-2	True	AATAAA	-17	NA	100246913	100238152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100240446_100242035_100242128_100242243_100242379_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515
ENSMUSG00000006941.6_120321699_120324396_1	chr9	+	893	4	FSM	ENSMUSG00000006941.6	ENSMUST00000007139.6	1035	4	142	0	142	0	multi-exon	FALSE	canonical	3	407	junction_2	26.9608770051883	902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGCAATGCACTTTGTTT	NA	False	NA	34	True	AATAAA	-36	NA	120321698	120324396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_120321908_120323172_120323337_120323600_120323703_120323978
ENSMUSG00000006941.6_120321699_120324396_2	chr9	+	888	4	NNC	ENSMUSG00000006941.6	novel	1035	4	NA	NA	142	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	215.199648905125	785	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGCAATGCACTTTGTTT	NA	False	NA	34	True	AATAAA	-36	NA	120321698	120324396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_120321908_120323172_120323337_120323605_120323703_120323978
ENSMUSG00000006941.6_120321807_120324396_1	chr9	+	785	4	FSM	ENSMUSG00000006941.6	ENSMUST00000007139.6	1035	4	250	0	250	0	multi-exon	FALSE	canonical	3	407	junction_2	26.9608770051883	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGCAATGCACTTTGTTT	NA	False	NA	34	True	AATAAA	-36	NA	120321806	120324396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_120321908_120323172_120323337_120323600_120323703_120323978
ENSMUSG00000006998.17_20480565_20482164_1	chr16	+	694	4	ISM	ENSMUSG00000006998.17	ENSMUST00000172207.8	3001	21	10111	0	2396	0	3prime_fragment	FALSE	canonical	3	2849	junction_3	257.852671112789	4270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	23	True	AATAAA	-16	NA	20480564	20482164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_20480661_20480842_20480970_20481371_20481491_20481812
ENSMUSG00000007029.17_35220027_35235302_1	chr17	+	4077	30	FSM	ENSMUSG00000007029.17	ENSMUST00000087315.14	4137	30	64	-4	0	4	multi-exon	FALSE	canonical	0	0	junction_12	417.564149877336	999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCGCTCTTGTCTGTGTGGT	9538	False	NA	14	True	AATAAA	-15	NA	35220026	35235302	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35220209_35220387_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230301_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569_35234896_35235162
ENSMUSG00000007029.17_35230595_35235302_1	chr17	+	2271	18	ISM	ENSMUSG00000007029.17	ENSMUST00000087315.14	4137	30	10632	-4	404	4	3prime_fragment	FALSE	canonical	0	0	junction_7	410.844593826932	890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCGCTCTTGTCTGTGTGGT	NA	False	NA	14	True	AATAAA	-15	NA	35230594	35235302	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569_35234896_35235162
ENSMUSG00000007029.17_35234643_35235302_1	chr17	+	393	2	ISM	ENSMUSG00000007029.17	ENSMUST00000172637.8	3731	28	12953	-4	702	4	3prime_fragment	FALSE	canonical	3	1811	junction_1	0	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCGCTCTTGTCTGTGTGGT	1633	False	NA	14	True	AATAAA	-15	NA	35234642	35235302	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_35234896_35235162
ENSMUSG00000007030.9_35244935_35246892_1	chr17	+	547	4	NIC	ENSMUSG00000007030.9	novel	4313	17	NA	NA	9321	1175	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAGGAAGGGCGGAGCC	1718	False	NA	NA	False	NA	NA	NA	35244934	35246892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_35245124_35245669_35245763_35246419_35246565_35246772
ENSMUSG00000007030.9_35244935_35246892_2	chr17	+	853	4	NIC	ENSMUSG00000007030.9	novel	4313	17	NA	NA	9321	1175	intron_retention	FALSE	non_canonical	0	0	junction_1	0	172	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAGGAAGGGCGGAGCC	1718	False	NA	NA	False	NA	NA	NA	35244934	35246892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_35245434_35245669_35245763_35246419_35246561_35246772
ENSMUSG00000007030.9_35244935_35246892_3	chr17	+	522	4	NIC	ENSMUSG00000007030.9	novel	4313	17	NA	NA	9321	1175	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAGGAAGGGCGGAGCC	1718	False	NA	NA	False	NA	NA	NA	35244934	35246892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_35245124_35245313_35245434_35245669_35245763_35246772
ENSMUSG00000007030.9_35244935_35246892_4	chr17	+	667	5	NIC	ENSMUSG00000007030.9	novel	4313	17	NA	NA	9321	1175	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	438	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAGGAAGGGCGGAGCC	1718	False	NA	NA	False	NA	NA	NA	35244934	35246892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_35245124_35245313_35245434_35245669_35245763_35246419_35246565_35246772
ENSMUSG00000007034.16_35146680_35149335_1	chr17	+	990	8	ISM	ENSMUSG00000007034.16	ENSMUST00000169230.2	2246	18	9985	77	9985	3	3prime_fragment	FALSE	canonical	3	13	junction_4	6.91641053537726	217	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATGGCTTTATTTTCAG	4374	False	NA	NA	False	ATTAAA	-26	NA	35146679	35149335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_35146901_35146993_35147089_35147181_35147286_35147395_35147470_35147610_35147682_35147783_35147879_35147954_35148040_35149090
ENSMUSG00000007034.16_35147946_35149332_1	chr17	+	336	2	ISM	ENSMUSG00000007034.16	ENSMUST00000169230.2	2246	18	11251	80	11251	0	3prime_fragment	FALSE	canonical	3	35	junction_1	0	151	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTATGGCTTTATTTT	5640	False	NA	NA	False	ATTAAA	-23	NA	35147945	35149332	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_35148040_35149090
ENSMUSG00000007038.6_35150229_35154297_1	chr17	+	1874	6	FSM	ENSMUSG00000007038.6	ENSMUST00000007253.6	2474	6	0	600	0	-600	multi-exon	FALSE	canonical	3	102	junction_3	26.914680009244	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTTGTGGAGTCTGTGGT	7923	False	NA	13	True	NA	NA	NA	35150228	35154297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35150524_35150891_35151085_35151541_35151805_35152978_35153162_35153258_35153482_35153580
ENSMUSG00000007038.6_35150290_35154297_1	chr17	+	1813	6	FSM	ENSMUSG00000007038.6	ENSMUST00000007253.6	2474	6	61	600	0	-600	multi-exon	FALSE	canonical	3	102	junction_3	26.914680009244	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTTGTGGAGTCTGTGGT	7984	False	NA	13	True	NA	NA	NA	35150289	35154297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35150524_35150891_35151085_35151541_35151805_35152978_35153162_35153258_35153482_35153580
ENSMUSG00000007038.6_35150290_35154929_1	chr17	+	2445	6	FSM	ENSMUSG00000007038.6	ENSMUST00000007253.6	2474	6	61	-32	0	0	multi-exon	FALSE	canonical	3	102	junction_3	26.914680009244	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGATTCGGGCTGCGTTC	7984	False	NA	NA	False	NA	NA	NA	35150289	35154929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35150524_35150891_35151085_35151541_35151805_35152978_35153162_35153258_35153482_35153580
ENSMUSG00000007039.13_35278077_35281071_1	chr17	+	1231	7	NNC	ENSMUSG00000007039.13	novel	1254	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	162.253659434849	3699	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTGACTGGTTTCTCG	NA	False	NA	17	True	AATAAA	-23	NA	35278076	35281071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280500_35280602_35280766
ENSMUSG00000007039.13_35278228_35281071_1	chr17	+	1129	7	FSM	ENSMUSG00000007039.13	ENSMUST00000007255.13	1342	7	217	-4	151	0	multi-exon	FALSE	canonical	3	393	junction_1	36.6488593122472	3539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTGACTGGTTTCTCG	NA	False	NA	17	True	AATAAA	-23	NA	35278227	35281071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
ENSMUSG00000007039.13_35278573_35281071_1	chr17	+	1177	7	NNC	ENSMUSG00000007039.13	novel	382	2	NA	NA	-219	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	166.174021903412	2637	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTGACTGGTTTCTCG	NA	False	NA	17	True	AATAAA	-23	NA	35278572	35281071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35278642_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
ENSMUSG00000007041.10_35269231_35277725_2	chr17	+	1167	6	NNC	ENSMUSG00000007041.10	novel	1466	6	NA	NA	289	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	467.412194962861	4567	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGCTTAAAGTGTAGTGG	1965	False	NA	NA	False	AATAAA	-41	NA	35269230	35277725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35269463_35271410_35271521_35271756_35271883_35272018_35272116_35274202_35274385_35277305
ENSMUSG00000007041.10_35269231_35277725_3	chr17	+	1171	6	NNC	ENSMUSG00000007041.10	novel	1466	6	NA	NA	289	0	at_least_one_novel_splicesite	TRUE	canonical	2	9	junction_4	464.054910544	4786	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGCTTAAAGTGTAGTGG	1965	False	NA	NA	False	AATAAA	-41	NA	35269230	35277725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35269463_35271410_35271521_35271756_35271883_35272008_35272116_35274208_35274385_35277305
ENSMUSG00000007041.10_35269408_35277725_1	chr17	+	994	6	NNC	ENSMUSG00000007041.10	novel	1466	6	NA	NA	466	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_4	464.054910544	2310	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGCTTAAAGTGTAGTGG	2142	False	NA	NA	False	AATAAA	-41	NA	35269407	35277725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35269463_35271410_35271521_35271756_35271883_35272008_35272116_35274208_35274385_35277305
ENSMUSG00000007041.10_35269408_35277725_2	chr17	+	992	6	NNC	ENSMUSG00000007041.10	novel	1466	6	NA	NA	466	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	467.62061545659	1614	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGCTTAAAGTGTAGTGG	2142	False	NA	NA	False	AATAAA	-41	NA	35269407	35277725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35269463_35271410_35271521_35271756_35271883_35272008_35272116_35274210_35274385_35277305
ENSMUSG00000007041.10_35269408_35277725_3	chr17	+	990	6	NNC	ENSMUSG00000007041.10	novel	1466	6	NA	NA	466	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	467.412194962861	2147	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGCTTAAAGTGTAGTGG	2142	False	NA	NA	False	AATAAA	-41	NA	35269407	35277725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35269463_35271410_35271521_35271756_35271883_35272018_35272116_35274202_35274385_35277305
ENSMUSG00000007041.10_35269408_35277725_4	chr17	+	988	6	NNC	ENSMUSG00000007041.10	novel	1466	6	NA	NA	466	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	467.412194962861	1295	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGCTTAAAGTGTAGTGG	2142	False	NA	NA	False	AATAAA	-41	NA	35269407	35277725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35269463_35271410_35271521_35271756_35271871_35272008_35272116_35274202_35274385_35277305
ENSMUSG00000007041.10_35269408_35277725_5	chr17	+	818	5	NIC	ENSMUSG00000007041.10	novel	1466	6	NA	NA	466	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_4	490.225649573745	260	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGCTTAAAGTGTAGTGG	2142	False	NA	NA	False	AATAAA	-41	NA	35269407	35277725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_35269463_35271410_35271521_35271756_35271883_35272008_35272116_35277305
ENSMUSG00000007041.10_35270428_35277725_1	chr17	+	1012	6	NNC	ENSMUSG00000007041.10	novel	843	4	NA	NA	-998	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	467.428026545264	615	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGCTTAAAGTGTAGTGG	3162	False	NA	NA	False	AATAAA	-41	NA	35270427	35277725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35270495_35271410_35271521_35271756_35271883_35272008_35272116_35274202_35274385_35277305
ENSMUSG00000007050.18_35200887_35204867_1	chr17	+	741	4	FSM	ENSMUSG00000007050.18	ENSMUST00000174241.8	521	4	0	-220	0	0	multi-exon	FALSE	canonical	3	88	junction_1	766.950237412224	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	25	False	NA	26	True	AATAAA	-20	NA	35200886	35204867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35201062_35204084_35204116_35204224_35204285_35204392
ENSMUSG00000007050.18_35201135_35204867_1	chr17	+	1095	4	FSM	ENSMUSG00000007050.18	ENSMUST00000174860.8	691	4	-10	-394	0	0	multi-exon	FALSE	canonical	3	1479	junction_1	117.83132954449	1794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	273	False	NA	26	True	AATAAA	-20	NA	35201134	35204867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35201664_35204084_35204116_35204224_35204285_35204392
ENSMUSG00000007097.15_172102110_172106471_2	chr1	-	692	6	ISM	ENSMUSG00000007097.15	ENSMUST00000085913.11	6227	23	19160	2834	-2426	0	3prime_fragment	FALSE	canonical	3	144	junction_3	13.6616250863505	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTCCACAGGTCCCGC	NA	False	NA	-14	True	AATAAA	-18	NA	172106471	172102109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_172102297_172103484_172103577_172103687_172103790_172105823_172105955_172106101_172106248_172106437
ENSMUSG00000007216.7_48578997_48598482_1	chr6	+	2464	3	FSM	ENSMUSG00000007216.7	ENSMUST00000204095.3	4143	3	0	1679	0	-1679	multi-exon	FALSE	canonical	3	52	junction_2	4.5	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGTCACTGTTCTTTC	NA	False	NA	8	True	AATGAA	-16	NA	48578996	48598482	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_48579055_48590111_48590194_48596158
ENSMUSG00000007338.11_6103927_6107781_1	chr19	-	1455	4	FSM	ENSMUSG00000007338.11	ENSMUST00000007482.8	1764	4	34	275	-6	0	multi-exon	FALSE	canonical	3	907	junction_2	10.0332779621949	5862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACGGTGTTCAGAACCT	NA	False	NA	-15	True	ATTAAA	-15	NA	6107781	6103926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6105013_6105105_6105231_6106958_6107110_6107688
ENSMUSG00000007338.11_6104709_6107781_1	chr19	-	522	3	FSM	ENSMUSG00000007338.11	ENSMUST00000235520.2	1311	3	7	782	-6	252	multi-exon	FALSE	canonical	3	20	junction_2	445.5	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGTCCATGTGTCCA	NA	False	NA	-14	True	CATAAA	-12	NA	6107781	6104708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6105013_6105105_6105231_6107688
ENSMUSG00000007338.11_6104709_6107781_2	chr19	-	673	4	FSM	ENSMUSG00000007338.11	ENSMUST00000007482.8	1764	4	34	1057	-6	252	multi-exon	FALSE	canonical	3	907	junction_2	10.0332779621949	4527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGTCCATGTGTCCA	NA	False	NA	-14	True	CATAAA	-12	NA	6107781	6104708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6105013_6105105_6105231_6106958_6107110_6107688
ENSMUSG00000007338.11_6104709_6107781_3	chr19	-	664	4	NNC	ENSMUSG00000007338.11	novel	1764	4	NA	NA	-6	252	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	431.672972926909	4176	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGTCCATGTGTCCA	NA	False	NA	-14	True	CATAAA	-12	NA	6107781	6104708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6105004_6105105_6105231_6106958_6107110_6107688
ENSMUSG00000007411.17_111594265_111622250_1	chr12	+	1550	9	ISM	ENSMUSG00000007411.17	ENSMUST00000221459.2	2807	18	52780	344	3322	122	3prime_fragment	FALSE	canonical	3	315	junction_7	92.5141036545239	223	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTCTTGTTTCCATTG	1604	False	NA	30	True	ATTAAA	-16	NA	111594264	111622250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111619823_111619869_111621703
ENSMUSG00000007411.17_111594265_111622657_1	chr12	+	1957	9	ISM	ENSMUSG00000007411.17	ENSMUST00000221459.2	2807	18	52780	-63	3322	2	3prime_fragment	FALSE	canonical	3	315	junction_7	92.5141036545239	340	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCACTGTCTCCTACTG	1604	False	NA	NA	False	ATTAAA	-23	NA	111594264	111622657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111619823_111619869_111621703
ENSMUSG00000007415.16_3693077_3697400_1	chr5	-	872	4	FSM	ENSMUSG00000007415.16	ENSMUST00000119783.2	1278	4	406	0	406	0	multi-exon	FALSE	canonical	3	421	junction_2	22.2910046630673	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATGTTACTTTATGCAT	NA	False	NA	-8	True	NA	NA	NA	3697400	3693076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_3693742_3694880_3694941_3696783_3696910_3697379
ENSMUSG00000007415.16_3693221_3697400_1	chr5	-	728	4	FSM	ENSMUSG00000007415.16	ENSMUST00000119783.2	1278	4	406	144	406	-144	multi-exon	FALSE	canonical	3	421	junction_2	22.2910046630673	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTCTTCCTGTGATCC	NA	False	NA	NA	False	NA	NA	NA	3697400	3693220	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_3693742_3694880_3694941_3696783_3696910_3697379
ENSMUSG00000007458.15_122285679_122293749_1	chr6	+	1625	7	FSM	ENSMUSG00000007458.15	ENSMUST00000007602.15	2515	7	0	890	0	1	multi-exon	FALSE	canonical	3	1209	junction_5	55.6586820620906	4854	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGGTTGCCTCAAGTTG	2664	False	NA	12	True	ATTAAA	-19	NA	122285678	122293749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
ENSMUSG00000007458.15_122285958_122289579_1	chr6	+	555	2	ISM	ENSMUSG00000007458.15	ENSMUST00000123093.2	2976	6	0	4169	0	-4169	5prime_fragment	FALSE	canonical	3	1377	junction_1	0	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCTGAGAGGGAAGAAACT	2943	False	NA	NA	False	NA	NA	NA	122285957	122289579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_122286126_122289192
ENSMUSG00000007458.15_122285958_122293749_2	chr6	+	1335	7	NNC	ENSMUSG00000007458.15	novel	2515	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	492.409720998005	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGGTTGCCTCAAGTTG	2943	False	NA	12	True	ATTAAA	-19	NA	122285957	122293749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292131_122292278_122292394_122293008_122293136_122293286
ENSMUSG00000007458.15_122285958_122293749_3	chr6	+	310	3	NNC	ENSMUSG00000007458.15	novel	2976	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	688.5	110	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGGTTGCCTCAAGTTG	2943	False	NA	12	True	ATTAAA	-19	NA	122285957	122293749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_122286126_122289192_122289266_122293680
ENSMUSG00000007458.15_122285958_122293749_4	chr6	+	1340	7	NNC	ENSMUSG00000007458.15	novel	2515	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	497.121603723766	620	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGGTTGCCTCAAGTTG	2943	False	NA	12	True	ATTAAA	-19	NA	122285957	122293749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293130_122293286
ENSMUSG00000007458.15_122285958_122293749_5	chr6	+	1339	7	NNC	ENSMUSG00000007458.15	novel	2515	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	491.748044112927	2918	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGGTTGCCTCAAGTTG	2943	False	NA	12	True	ATTAAA	-19	NA	122285957	122293749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_122286119_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
ENSMUSG00000007458.15_122285958_122293749_6	chr6	+	1341	7	NNC	ENSMUSG00000007458.15	novel	2515	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	502.18071669691	1594	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGGTTGCCTCAAGTTG	2943	False	NA	12	True	ATTAAA	-19	NA	122285957	122293749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292389_122293008_122293136_122293286
ENSMUSG00000007458.15_122285958_122294639_2	chr6	+	2225	7	NNC	ENSMUSG00000007458.15	novel	2515	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	492.409720998005	3397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTTGTCGTTTGTGCT	2943	False	NA	6	True	ATTAAA	-15	NA	122285957	122294639	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292131_122292278_122292394_122293008_122293136_122293286
ENSMUSG00000007458.15_122285958_122294639_3	chr6	+	1200	3	NNC	ENSMUSG00000007458.15	novel	2976	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	688.5	331	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTTGTCGTTTGTGCT	2943	False	NA	6	True	ATTAAA	-15	NA	122285957	122294639	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_122286126_122289192_122289266_122293680
ENSMUSG00000007458.15_122285958_122294639_4	chr6	+	2231	7	NNC	ENSMUSG00000007458.15	novel	2515	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	502.18071669691	4468	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTTGTCGTTTGTGCT	2943	False	NA	6	True	ATTAAA	-15	NA	122285957	122294639	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292389_122293008_122293136_122293286
ENSMUSG00000007564.16_21165749_21186167_1	chr17	+	2223	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	176	11	0	0	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	1556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	28	True	AATAAA	-13	NA	21165748	21186167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
ENSMUSG00000007589.10_55916559_55919206_2	chr14	-	1541	8	NIC	ENSMUSG00000007589.10	novel	2956	9	NA	NA	-4	1105	combination_of_known_junctions	FALSE	canonical	2	15	junction_5	121.452434629986	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTAGGTCATTCCTCCGA	NA	False	NA	-25	True	AATAAA	-15	NA	55919206	55916558	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_55916867_55916970_55917063_55917322_55917388_55917471_55917914_55918067_55918165_55918456_55918547_55918681_55918769_55918846
ENSMUSG00000007589.10_55916559_55919265_1	chr14	-	1708	9	FSM	ENSMUSG00000007589.10	ENSMUST00000007733.8	2956	9	12	1236	-4	1105	multi-exon	FALSE	canonical	3	280	junction_6	40.8281459290034	885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTAGGTCATTCCTCCGA	NA	False	NA	-25	True	AATAAA	-15	NA	55919265	55916558	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55916867_55916970_55917063_55917322_55917388_55917471_55917914_55918067_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
ENSMUSG00000007589.10_55916559_55919265_2	chr14	-	1534	9	NIC	ENSMUSG00000007589.10	novel	2956	9	NA	NA	-4	1105	combination_of_known_junctions	FALSE	canonical	2	25	junction_8	110.476241789807	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTAGGTCATTCCTCCGA	NA	False	NA	-25	True	AATAAA	-15	NA	55919265	55916558	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_55916867_55916970_55917063_55917322_55917388_55917471_55917914_55918067_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55919020
ENSMUSG00000007603.10_57071778_57077093_1	chr17	+	2277	13	FSM	ENSMUSG00000007603.10	ENSMUST00000007747.10	2025	13	0	-252	0	0	multi-exon	FALSE	canonical	3	220	junction_6	33.8230690505755	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTGGCTCTCCTTGTGA	9244	False	NA	12	True	NA	NA	NA	57071777	57077093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
ENSMUSG00000007603.10_57071784_57076841_1	chr17	+	2019	13	FSM	ENSMUSG00000007603.10	ENSMUST00000007747.10	2025	13	6	0	0	0	multi-exon	FALSE	canonical	3	220	junction_6	33.8230690505755	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTATTTTGTTGGTT	9250	False	NA	16	True	AATAAA	-17	NA	57071783	57076841	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
ENSMUSG00000007610.16_71941372_71945920_1	chr8	+	1978	8	FSM	ENSMUSG00000007610.16	ENSMUST00000095259.10	2109	8	7	124	0	-124	multi-exon	FALSE	canonical	0	0	junction_4	25.5774135055258	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTGTAGTAGCATGTG	NA	False	NA	15	True	ATTAAA	-17	NA	71941371	71945920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943709_71943854_71944068_71944235_71944720_71945000_71945182
ENSMUSG00000007613.16_47353222_47384053_1	chr4	+	480	2	ISM	ENSMUSG00000007613.16	ENSMUST00000044234.14	2861	9	-85	28080	0	22740	5prime_fragment	FALSE	canonical	3	200	junction_1	0	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGCTTCTAGACT	0	True	NA	NA	False	NA	NA	NA	47353221	47384053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_47353397_47383748
ENSMUSG00000007646.14_87269417_87295332_1	chr11	-	1981	9	FSM	ENSMUSG00000007646.14	ENSMUST00000067692.13	3944	9	17	1946	0	0	multi-exon	FALSE	canonical	3	130	junction_1	12.5940213990607	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAATAGAAATAAAA	NA	False	NA	-38	True	NA	NA	NA	87295332	87269416	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_87270314_87271657_87271719_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
ENSMUSG00000007646.14_87293191_87295332_1	chr11	-	695	2	ISM	ENSMUSG00000007646.14	ENSMUST00000129400.2	938	8	-83	22981	0	-22981	5prime_fragment	FALSE	canonical	3	159	junction_1	0	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTGGCTTCTGAGATAT	NA	False	NA	NA	False	ACTAAA	-16	NA	87295332	87293190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_87293683_87295129
ENSMUSG00000007656.14_74944959_74964105_1	chr9	+	394	4	NNC	ENSMUSG00000007656.14	novel	3944	4	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2392.89146338808	682	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCCTCTACTGTCCTTT	NA	False	NA	27	True	ATTAAA	-14	NA	74944958	74964105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_74945002_74945188_74945244_74959530_74959638_74963916
ENSMUSG00000007656.14_74944959_74964105_2	chr9	+	400	4	NNC	ENSMUSG00000007656.14	novel	3944	4	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	1	44	junction_2	2373.77144832625	4434	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCCTCTACTGTCCTTT	NA	False	NA	27	True	ATTAAA	-14	NA	74944958	74964105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_74945002_74945188_74945244_74959524_74959638_74963916
ENSMUSG00000007656.14_74944959_74964105_3	chr9	+	346	4	NNC	ENSMUSG00000007656.14	novel	3944	4	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_3	2461.20390595064	198	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCCTCTACTGTCCTTT	NA	False	NA	27	True	ATTAAA	-14	NA	74944958	74964105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_74945002_74945188_74945244_74959514_74959574_74963916
ENSMUSG00000007656.14_74944959_74964105_5	chr9	+	500	5	NNC	ENSMUSG00000007656.14	novel	1047	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	2465.43713162595	628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCCTCTACTGTCCTTT	NA	False	NA	27	True	ATTAAA	-14	NA	74944958	74964105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_74945002_74945188_74945244_74950490_74950581_74959514_74959638_74963916
ENSMUSG00000007656.14_74945199_74964105_1	chr9	+	351	3	NNC	ENSMUSG00000007656.14	novel	599	3	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2907	706	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCCTCTACTGTCCTTT	NA	False	NA	27	True	ATTAAA	-14	NA	74945198	74964105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_74945248_74959524_74959638_74963916
ENSMUSG00000007656.14_74945199_74964105_2	chr9	+	338	3	NNC	ENSMUSG00000007656.14	novel	4046	3	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2907	348	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCCTCTACTGTCCTTT	NA	False	NA	27	True	ATTAAA	-14	NA	74945198	74964105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_74945225_74959514_74959638_74963916
ENSMUSG00000007659.19_152622588_152673630_1	chr2	-	2417	3	NIC	ENSMUSG00000007659.19	novel	2417	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_2	148	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCCTTGGCTCTGCGC	NA	False	NA	-5	True	AATAAA	-22	NA	152673630	152622587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_152624203_152671346_152672041_152673522
ENSMUSG00000007721.7_71320871_71322720_1	chr8	-	875	4	NNC	ENSMUSG00000007721.7	novel	1356	5	NA	NA	3307	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	278.90619689542	3916	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCATGTCTGTATGTGTG	NA	False	NA	-5	True	AATAAA	-18	NA	71322720	71320870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_71321290_71321380_71321496_71321576_71321746_71322548
ENSMUSG00000007721.7_71320871_71326127_1	chr8	-	904	5	FSM	ENSMUSG00000007721.7	ENSMUST00000007865.7	1356	5	452	0	-100	0	multi-exon	FALSE	canonical	3	353	junction_4	97.9030132324843	4077	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCATGTCTGTATGTGTG	NA	False	NA	-5	True	AATAAA	-18	NA	71326127	71320870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71321290_71321380_71321496_71321576_71321752_71322548_71322719_71326102
ENSMUSG00000007739.11_22940650_22953337_1	chr11	+	1910	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	131	443	0	186	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	7164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	20	True	ATTAAA	-20	NA	22940649	22953337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
ENSMUSG00000007739.11_22940650_22953337_2	chr11	+	1905	14	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	0	186	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	1434.38899430463	7139	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	20	True	ATTAAA	-20	NA	22940649	22953337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950950_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
ENSMUSG00000007777.10_51576213_51579480_1	chr11	-	818	2	NNC	ENSMUSG00000007777.10	novel	813	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	0	3456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTATGTGTATGAATGCT	5184	False	NA	-12	True	ATTAAA	-14	NA	51579480	51576212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_51576920_51579369
ENSMUSG00000007777.10_51576389_51579480_1	chr11	-	637	2	FSM	ENSMUSG00000007777.10	ENSMUST00000007921.9	813	2	0	176	0	-176	multi-exon	FALSE	canonical	3	574	junction_1	0	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTCTCAGCTTACCTG	5184	False	NA	NA	False	GATAAA	-17	NA	51579480	51576388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_51576920_51579374
ENSMUSG00000007812.17_145168539_145174658_1	chr5	+	1064	3	FSM	ENSMUSG00000007812.17	ENSMUST00000199003.5	601	3	-27	-436	0	0	multi-exon	FALSE	canonical	3	21	junction_2	213	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTGTACTTTTTGTAG	1305	False	NA	NA	False	AATACA	-16	NA	145168538	145174658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_145168642_145170250_145170413_145173859
ENSMUSG00000007812.17_145168539_145174658_2	chr5	+	1191	4	FSM	ENSMUSG00000007812.17	ENSMUST00000085661.9	597	4	-28	-566	0	0	multi-exon	FALSE	canonical	3	16	junction_2	194.635271440941	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTGTACTTTTTGTAG	1305	False	NA	NA	False	AATACA	-16	NA	145168538	145174658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_145168642_145170250_145170413_145172546_145172674_145173859
ENSMUSG00000007812.17_145168539_145174658_3	chr5	+	1277	5	FSM	ENSMUSG00000007812.17	ENSMUST00000200039.5	1765	5	14	474	0	0	multi-exon	FALSE	canonical	3	46	junction_3	167.334059593377	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTGTACTTTTTGTAG	1305	False	NA	NA	False	AATACA	-16	NA	145168538	145174658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145172546_145172674_145173859
ENSMUSG00000007812.17_145168539_145182625_1	chr5	+	2611	4	FSM	ENSMUSG00000007812.17	ENSMUST00000167316.8	4104	4	6	1487	0	-1486	multi-exon	FALSE	canonical	3	281	junction_2	68.241401574769	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATTCTTATTCACAGTTT	1305	False	NA	5	True	ATTAAA	-20	NA	145168538	145182625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_145168642_145170250_145170413_145179729_145179835_145180384
ENSMUSG00000007812.17_145168539_145185965_1	chr5	+	761	4	NNC	ENSMUSG00000007812.17	novel	4104	4	NA	NA	0	1853	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	184.05071764779	70	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTAGTGTTTTTGCTTG	1305	False	NA	NA	False	NA	NA	NA	145168538	145185965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_145168642_145170250_145170413_145179729_145179835_145185574
ENSMUSG00000007815.14_108183638_108214609_1	chr9	+	1363	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	310	524	0	-524	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	4684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTAGATGTAGTATTTTTT	NA	False	NA	14	True	AATAAA	-14	NA	108183637	108214609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
ENSMUSG00000007815.14_108183638_108214777_1	chr9	+	1531	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	310	356	0	-356	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	4949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAAATTCCCATTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	108183637	108214777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
ENSMUSG00000007815.14_108183638_108215133_1	chr9	+	1887	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	310	0	0	0	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	8289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	15	True	AATAAA	-15	NA	108183637	108215133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
ENSMUSG00000007833.16_44803773_44809489_1	chr7	-	1151	10	NIC	ENSMUSG00000007833.16	novel	771	2	NA	NA	-5481	-5178	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	676	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCGCTTGGGGCGCGCGGG	7471	False	NA	NA	False	NA	NA	NA	44809489	44803772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_44803965_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUSG00000007833.16_44803773_44809489_2	chr7	-	1044	10	NIC	ENSMUSG00000007833.16	novel	666	5	NA	NA	-5481	-5178	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1841	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCGCTTGGGGCGCGCGGG	7471	False	NA	NA	False	NA	NA	NA	44809489	44803772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_44803845_44805716_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUSG00000007833.16_44803773_44809489_3	chr7	-	998	10	NNC	ENSMUSG00000007833.16	novel	666	5	NA	NA	-5481	-5178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	206	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCGCTTGGGGCGCGCGGG	7471	False	NA	NA	False	NA	NA	NA	44809489	44803772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_44803845_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809216_44809365
ENSMUSG00000007833.16_44803773_44809489_4	chr7	-	1031	10	NIC	ENSMUSG00000007833.16	novel	666	5	NA	NA	-5481	-5178	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1824	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCGCTTGGGGCGCGCGGG	7471	False	NA	NA	False	NA	NA	NA	44809489	44803772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_44803845_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUSG00000007837.12_44703008_44711837_1	chr7	-	1359	8	FSM	ENSMUSG00000007837.12	ENSMUST00000210690.2	1623	8	264	0	-9	0	multi-exon	FALSE	canonical	3	9	junction_7	11.5121940673747	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCTTTCTGGGCGCATT	NA	False	NA	-24	True	AATAAA	-44	NA	44711837	44703007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44709628_44709811_44710164_44710317_44711011_44711076_44711801
ENSMUSG00000007837.12_44711913_44712760_1	chr7	-	825	2	NNC	ENSMUSG00000007837.12	novel	926	6	NA	NA	-659	-5684	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGAACCGGAAAAAGAGTACT	NA	False	NA	NA	False	NA	NA	NA	44712760	44711912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_44712054_44712076
ENSMUSG00000007837.12_44711913_44726840_1	chr7	-	981	9	NIC	ENSMUSG00000007837.12	novel	1623	8	NA	NA	-14739	-5684	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGAACCGGAAAAAGAGTACT	NA	False	NA	NA	False	NA	NA	NA	44726840	44711912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_44711956_44722913_44722989_44723405_44723512_44724029_44724106_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
ENSMUSG00000007837.12_44711913_44727634_1	chr7	-	1781	9	NIC	ENSMUSG00000007837.12	novel	1623	8	NA	NA	-15533	-5684	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	898	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGAACCGGAAAAAGAGTACT	NA	False	NA	NA	False	NA	NA	NA	44727634	44711912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
ENSMUSG00000007850.17_50268592_50277148_1	chr11	+	1973	14	FSM	ENSMUSG00000007850.17	ENSMUST00000069304.14	2225	14	46	206	0	0	multi-exon	FALSE	canonical	3	130	junction_1	115.462537790991	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCACGTGAGTTTAAAGCTC	NA	False	NA	NA	False	NA	NA	NA	50268591	50277148	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
ENSMUSG00000007850.17_50273774_50277355_1	chr11	+	1266	7	NIC	ENSMUSG00000007850.17	novel	2427	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_4	161.388162170863	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	50273773	50277355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_50273889_50274005_50274142_50274506_50274567_50274657_50274718_50275470_50275564_50275967_50276018_50276603
ENSMUSG00000007867.10_86205021_86209233_1	chr12	+	599	5	NNC	ENSMUSG00000007867.10	novel	773	8	NA	NA	18299	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	83.8063243436914	103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTCTTCCATTCTGTCC	NA	False	NA	7	True	AATAAA	-17	NA	86205020	86209233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_86205126_86207922_86207996_86208225_86208302_86208760_86208824_86208951
ENSMUSG00000007867.10_86207759_86209233_1	chr12	+	658	4	ISM	ENSMUSG00000007867.10	ENSMUST00000220711.2	372	5	21037	-270	21037	0	3prime_fragment	FALSE	canonical	3	187	junction_3	12.1928941054479	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTCTTCCATTCTGTCC	NA	False	NA	7	True	AATAAA	-17	NA	86207758	86209233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_86207996_86208225_86208302_86208760_86208824_86208951
ENSMUSG00000007872.4_135871175_135872703_1	chr4	+	911	3	FSM	ENSMUSG00000007872.4	ENSMUST00000008016.3	1278	3	367	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	1.5	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGACATCTTGCGCCAC	772	False	NA	11	True	AATAAA	-19	NA	135871174	135872703	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_135871490_135871604_135871688_135872190
ENSMUSG00000007891.17_141929654_141941611_1	chr7	-	1194	5	NNC	ENSMUSG00000007891.17	novel	1922	9	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	930.890266089403	281	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTATTGGTGTGCTCTG	8848	False	NA	-8	True	AATAAA	-17	NA	141941611	141929653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_141930476_141930569_141930669_141930762_141930823_141939280_141939356_141941473
ENSMUSG00000007891.17_141929654_141941611_2	chr7	-	1957	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	164	6	-17	0	multi-exon	FALSE	canonical	3	1941	junction_4	107.727593377927	2823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTATTGGTGTGCTCTG	8848	False	NA	-8	True	AATAAA	-17	NA	141941611	141929653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
ENSMUSG00000007891.17_141929654_141941611_3	chr7	-	1951	9	NNC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	698.283072972559	2824	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTATTGGTGTGCTCTG	8848	False	NA	-8	True	AATAAA	-17	NA	141941611	141929653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936334_141936448_141937154_141937279_141939195_141939356_141941473
ENSMUSG00000007892.9_61820566_61821824_1	chr9	-	487	3	NNC	ENSMUSG00000007892.9	novel	499	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	139	junction_2	6054.5	96397	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGGACTGGTCTCACTTG	NA	False	NA	-28	True	AATAAA	-14	NA	61821824	61820565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_61820804_61821169_61821245_61821650
ENSMUSG00000007892.9_61820566_61821824_2	chr9	-	493	3	NNC	ENSMUSG00000007892.9	novel	499	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6124	317104	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGGACTGGTCTCACTTG	NA	False	NA	-28	True	AATAAA	-14	NA	61821824	61820565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_61820804_61821169_61821245_61821644
ENSMUSG00000007892.9_61820566_61821824_3	chr9	-	488	3	NNC	ENSMUSG00000007892.9	novel	499	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5778.5	172454	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGGACTGGTCTCACTTG	NA	False	NA	-28	True	AATAAA	-14	NA	61821824	61820565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_61820793_61821169_61821245_61821638
ENSMUSG00000007892.9_61820566_61821824_4	chr9	-	490	3	NNC	ENSMUSG00000007892.9	novel	499	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6124	255194	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGGACTGGTCTCACTTG	NA	False	NA	-28	True	AATAAA	-14	NA	61821824	61820565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_61820804_61821169_61821236_61821638
ENSMUSG00000007892.9_61820566_61821824_5	chr9	-	494	3	NNC	ENSMUSG00000007892.9	novel	499	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6124	129615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGGACTGGTCTCACTTG	NA	False	NA	-28	True	AATAAA	-14	NA	61821824	61820565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_61820804_61821169_61821236_61821634
ENSMUSG00000007892.9_61820685_61821824_1	chr9	-	380	3	FSM	ENSMUSG00000007892.9	ENSMUST00000008036.9	499	3	0	119	0	-119	multi-exon	FALSE	canonical	3	11557	junction_2	345.5	7423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGGAGAAGAAAGTGGAGG	NA	False	NA	-45	True	NA	NA	NA	61821824	61820684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_61820804_61821169_61821245_61821638
ENSMUSG00000007987.13_136937004_136942098_1	chr5	+	911	5	FSM	ENSMUSG00000007987.13	ENSMUST00000200157.5	3071	5	0	2160	0	63	multi-exon	FALSE	canonical	3	57	junction_4	11.0989864402116	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTAGCACTGTGTTTTC	4055	False	NA	6	True	NA	NA	NA	136937003	136942098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_136937125_136939977_136940055_136940155_136940246_136940542_136940746_136941678
ENSMUSG00000008035.13_10581252_10585936_1	chrX	+	1766	2	FSM	ENSMUSG00000008035.13	ENSMUST00000144356.8	447	2	-6	-1313	0	7	multi-exon	FALSE	canonical	3	13	junction_1	0	701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACAAGTGTGTGTTGCT	NA	False	NA	NA	False	AATAAA	-22	NA	10581251	10585936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_10581307_10584225
ENSMUSG00000008035.13_10583825_10585936_1	chrX	+	1830	2	FSM	ENSMUSG00000008035.13	ENSMUST00000008179.7	2019	2	196	-7	118	7	multi-exon	FALSE	canonical	3	265	junction_1	0	1266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACAAGTGTGTGTTGCT	1675	False	NA	NA	False	AATAAA	-22	NA	10583824	10585936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_10583944_10584225
ENSMUSG00000008090.15_108852940_108854800_1	chr5	+	1539	3	ISM	ENSMUSG00000008090.15	ENSMUST00000013633.12	2329	7	10572	-38	0	10	3prime_fragment	FALSE	canonical	3	107	junction_1	1	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTCCTTTTCTCATTCT	NA	False	NA	14	True	AAGAAA	-1	NA	108852939	108854800	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_108853006_108853084_108853439_108853681
ENSMUSG00000008140.19_44139535_44145852_1	chr7	-	1597	7	FSM	ENSMUSG00000008140.19	ENSMUST00000239015.2	1855	7	85	173	0	0	multi-exon	FALSE	canonical	3	638	junction_1	150.719386056782	3915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTGCCTTCTGTGCTTG	NA	False	NA	-1	True	ATTAAA	-31	NA	44145852	44139534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44140395_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ENSMUSG00000008140.19_44139999_44145852_1	chr7	-	1133	7	FSM	ENSMUSG00000008140.19	ENSMUST00000239015.2	1855	7	85	637	0	310	multi-exon	FALSE	canonical	3	638	junction_1	150.719386056782	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCTCTCTCCAGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	44145852	44139998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44140395_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ENSMUSG00000008206.17_4543453_4574057_1	chr8	+	1592	11	NNC	ENSMUSG00000008206.17	novel	9475	11	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	17.3611635554763	349	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTGCGCCAGAGCTTAA	NA	False	NA	17	True	AATAAA	-18	NA	4543452	4574057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_4543591_4565554_4565729_4566872_4566991_4568245_4568359_4568602_4568661_4569462_4569514_4570215_4570309_4570553_4570683_4571173_4571281_4573353_4573511_4573603
ENSMUSG00000008206.17_4543453_4574057_2	chr8	+	1598	11	FSM	ENSMUSG00000008206.17	ENSMUST00000008350.16	9475	11	254	7623	0	6	multi-exon	FALSE	canonical	3	44	junction_6	6.51459898996093	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTGCGCCAGAGCTTAA	NA	False	NA	17	True	AATAAA	-18	NA	4543452	4574057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_4543591_4565554_4565729_4566872_4566991_4568239_4568359_4568602_4568661_4569462_4569514_4570215_4570309_4570553_4570683_4571173_4571281_4573353_4573511_4573603
ENSMUSG00000008206.17_4543453_4574674_1	chr8	+	2215	11	FSM	ENSMUSG00000008206.17	ENSMUST00000008350.16	9475	11	254	7006	0	-448	multi-exon	FALSE	canonical	3	44	junction_6	6.51459898996093	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGAGCCTGGCATGGTG	NA	False	NA	4	True	AATAAA	-16	NA	4543452	4574674	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_4543591_4565554_4565729_4566872_4566991_4568239_4568359_4568602_4568661_4569462_4569514_4570215_4570309_4570553_4570683_4571173_4571281_4573353_4573511_4573603
ENSMUSG00000008226.15_73143003_73149303_1	chr2	+	930	3	ISM	ENSMUSG00000008226.15	ENSMUST00000112050.2	1897	4	5	1837	0	-1837	5prime_fragment	FALSE	canonical	3	91	junction_1	10.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCCAGATGGAATTTGAT	NA	False	NA	NA	False	AATAAA	-18	NA	73143002	73149303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_73143058_73145775_73145937_73148589
ENSMUSG00000008226.15_73143003_73150184_1	chr2	+	936	4	FSM	ENSMUSG00000008226.15	ENSMUST00000112050.2	1897	4	5	956	0	-956	multi-exon	FALSE	canonical	3	91	junction_1	8.65383665716478	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTGTGTGTGTTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	73143002	73150184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646
ENSMUSG00000008226.15_73143003_73152810_1	chr2	+	1077	5	ISM	ENSMUSG00000008226.15	ENSMUST00000090811.11	3309	8	58	15352	0	444	5prime_fragment	FALSE	canonical	3	52	junction_4	23.0475052879916	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTAGTGTTTTTGTTTGTT	NA	False	NA	NA	False	ATTAAA	-17	NA	73143002	73152810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646_73149844_73152328
ENSMUSG00000008226.15_73143003_73166212_1	chr2	+	1301	8	FSM	ENSMUSG00000008226.15	ENSMUST00000090811.11	3309	8	58	1950	0	-431	multi-exon	FALSE	canonical	3	42	junction_5	26.8791702981764	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAGTTCTTAATGGTCAT	NA	False	NA	NA	False	ATTAAA	-15	NA	73143002	73166212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646_73149844_73152328_73152539_73160106_73160270_73161326_73161502_73166054
ENSMUSG00000008226.15_73160155_73166212_1	chr2	+	448	3	ISM	ENSMUSG00000008226.15	ENSMUST00000123621.2	1239	5	10411	431	10411	-431	3prime_fragment	FALSE	canonical	3	50	junction_1	2.5	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAGTTCTTAATGGTCAT	NA	False	NA	NA	False	ATTAAA	-15	NA	73160154	73166212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_73160270_73161326_73161502_73166054
ENSMUSG00000008226.15_73160155_73168162_1	chr2	+	2398	3	ISM	ENSMUSG00000008226.15	ENSMUST00000123621.2	1239	5	10411	-1519	10411	0	3prime_fragment	FALSE	canonical	3	50	junction_1	2.5	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTTGATCTTTGATAAA	NA	False	NA	NA	False	AATAAA	-30	NA	73160154	73168162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_73160270_73161326_73161502_73166054
ENSMUSG00000008301.12_56659816_56706023_1	chr18	+	2109	20	NIC	ENSMUSG00000008301.12	novel	1386	5	NA	NA	-35699	-7349	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACGGGGGCGCCGCAGCAC	NA	False	NA	NA	False	NA	NA	NA	56659815	56706023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104_56695277_56695554_56695748_56705916
ENSMUSG00000008301.12_56706086_56720263_1	chr18	+	1229	5	FSM	ENSMUSG00000008301.12	ENSMUST00000008445.7	1942	5	192	521	192	2	multi-exon	FALSE	canonical	3	376	junction_1	34.4818792991333	3006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACCATTTCTACTGAGGT	NA	False	NA	17	True	AATAAA	-18	NA	56706085	56720263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_56706208_56708533_56709121_56713251_56713373_56717362_56717447_56719948
ENSMUSG00000008301.12_56706086_56720580_1	chr18	+	1546	5	FSM	ENSMUSG00000008301.12	ENSMUST00000008445.7	1942	5	192	204	192	-204	multi-exon	FALSE	canonical	3	376	junction_1	34.4818792991333	5107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTCAGCTGTTACATTCA	NA	False	NA	NA	False	ATTAAA	-22	NA	56706085	56720580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_56706208_56708533_56709121_56713251_56713373_56717362_56717447_56719948
ENSMUSG00000008301.12_56706091_56709774_1	chr18	+	1358	2	ISM	ENSMUSG00000008301.12	ENSMUST00000008445.7	1942	5	197	11010	197	-3598	5prime_fragment	FALSE	canonical	3	376	junction_1	0	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAAAGACAGACAG	NA	False	NA	NA	False	NA	NA	NA	56706090	56709774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_+_56706208_56708533
ENSMUSG00000008307.12_3633978_3646106_1	chr5	+	1546	5	Fusion	ENSMUSG00000008307.12_ENSMUSG00000005907.15	novel	773	6	NA	NA	3480	-9756	multi-exon	FALSE	non_canonical	0	0	junction_1	0	795	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCCGCCAGCCGCGCTC	NA	False	NA	NA	False	NA	NA	NA	3633977	3646106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr5_+_3634808_3640222_3640461_3641669_3641816_3645254_3645446_3645965
ENSMUSG00000008333.13_142904959_142913660_1	chr2	+	948	7	FSM	ENSMUSG00000008333.13	ENSMUST00000008477.13	2061	7	0	1113	0	-1113	multi-exon	FALSE	canonical	3	784	junction_1	113.59540777103	4409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTACTGGTTTATTG	1988	False	NA	13	True	AATAAA	-13	NA	142904958	142913660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_142905019_142906461_142906551_142907095_142907269_142910180_142910322_142911293_142911345_142912807_142912897_142913315
ENSMUSG00000008333.13_142904959_142913979_1	chr2	+	1267	7	FSM	ENSMUSG00000008333.13	ENSMUST00000008477.13	2061	7	0	794	0	-794	multi-exon	FALSE	canonical	3	784	junction_1	113.59540777103	4536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTTTTTCAGAAGT	1988	False	NA	19	True	AATAAA	-20	NA	142904958	142913979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_142905019_142906461_142906551_142907095_142907269_142910180_142910322_142911293_142911345_142912807_142912897_142913315
ENSMUSG00000008373.17_3632991_3634457_3	chr7	+	995	3	NIC	ENSMUSG00000008373.17	novel	827	3	NA	NA	0	37	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	488	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGTGTTTTCTAATTGT	2940	False	NA	NA	False	AATAAA	-22	NA	3632990	3634457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_3633187_3633556_3633742_3633843
ENSMUSG00000008373.17_3632991_3644228_1	chr7	+	1872	14	NNC	ENSMUSG00000008373.17	novel	3144	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	248.858125975234	1635	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGGTGTGAGTGATTAT	2940	False	NA	14	True	ATTAAA	-22	NA	3632990	3644228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_3633056_3633556_3633742_3633843_3633897_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641629_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
ENSMUSG00000008450.9_106587277_106605782_1	chr8	+	703	5	FSM	ENSMUSG00000008450.9	ENSMUST00000008594.9	948	5	65	180	0	171	multi-exon	FALSE	canonical	3	2641	junction_1	453.90775494587	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATTGTCGGGTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	106587276	106605782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106603241_106605436
ENSMUSG00000008450.9_106587277_106605976_1	chr8	+	903	5	NNC	ENSMUSG00000008450.9	novel	948	5	NA	NA	0	14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1489.99471475573	9019	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTTAATTAGTTAAGTA	NA	False	NA	6	True	AATAAA	-29	NA	106587276	106605976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106603247_106605436
ENSMUSG00000008475.14_152642426_152651348_1	chr1	+	1781	4	FSM	ENSMUSG00000008475.14	ENSMUST00000077755.11	1914	4	133	0	133	0	multi-exon	FALSE	canonical	0	0	junction_1	649.932817040859	3039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGTAACTCTCCAGTTA	NA	False	NA	100	True	AATAAA	-35	NA	152642425	152651348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_152642619_152644611_152644685_152647114_152647292_152650010
ENSMUSG00000008668.16_34170973_34174637_1	chr17	-	536	5	NNC	ENSMUSG00000008668.16	novel	715	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9338.29794448646	56488	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_34171093_34171194_34171287_34171386_34171566_34174051_34174151_34174591
ENSMUSG00000008668.16_34170973_34174637_2	chr17	-	527	5	NNC	ENSMUSG00000008668.16	novel	715	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9689.6864371351	26322	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_34171074_34171194_34171287_34171376_34171566_34174051_34174151_34174591
ENSMUSG00000008668.16_34170973_34174637_3	chr17	-	534	5	NNC	ENSMUSG00000008668.16	novel	715	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9689.6864371351	83139	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_34171093_34171206_34171287_34171376_34171566_34174051_34174151_34174591
ENSMUSG00000008668.16_34170973_34174637_4	chr17	-	648	4	NIC	ENSMUSG00000008668.16	novel	715	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	20050	junction_3	1505.03444035898	16990	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_34171287_34171376_34171566_34174051_34174151_34174591
ENSMUSG00000008668.16_34170973_34174637_5	chr17	-	532	5	NNC	ENSMUSG00000008668.16	novel	715	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	9789.97947840035	22881	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051_34174151_34174605
ENSMUSG00000008682.14_73314466_73316741_1	chrX	+	836	6	NIC	ENSMUSG00000008682.14	novel	855	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	57	junction_1	3675.69005222149	305245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTCTGATTCTT	NA	False	NA	12	True	AATAAA	-22	NA	73314465	73316741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_73314485_73314584_73314631_73315265_73315514_73315784_73315924_73316277_73316441_73316520
ENSMUSG00000008683.17_117708287_117714479_1	chr7	-	434	4	NNC	ENSMUSG00000008683.17	novel	5130	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4077.00947046021	2229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117714479	117708286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_117708417_117709155_117709242_117714007_117714068_117714321
ENSMUSG00000008683.17_117708287_117714479_2	chr7	-	432	4	NNC	ENSMUSG00000008683.17	novel	5130	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4077.00947046021	2498	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117714479	117708286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_117708417_117709155_117709242_117714007_117714076_117714331
ENSMUSG00000008683.17_117708287_117714479_3	chr7	-	424	4	NNC	ENSMUSG00000008683.17	novel	5130	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4077.00947046021	1266	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117714479	117708286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_117708417_117709155_117709242_117714007_117714068_117714331
ENSMUSG00000008683.17_117708287_117715411_1	chr7	-	464	5	NNC	ENSMUSG00000008683.17	novel	5179	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4166.02163340518	56610	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117715411	117708286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_117708394_117709155_117709242_117714007_117714088_117714331_117714470_117715358
ENSMUSG00000008683.17_117708287_117715411_10	chr7	-	471	5	NNC	ENSMUSG00000008683.17	novel	5179	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3600.67732343513	56783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117715411	117708286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_117708417_117709155_117709242_117714007_117714068_117714327_117714470_117715358
ENSMUSG00000008683.17_117708287_117715411_11	chr7	-	471	5	NNC	ENSMUSG00000008683.17	novel	5179	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3600.67732343513	56005	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117715411	117708286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_117708417_117709155_117709242_117714007_117714088_117714347_117714470_117715358
ENSMUSG00000008683.17_117708287_117715411_2	chr7	-	479	5	NNC	ENSMUSG00000008683.17	novel	5179	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3600.67732343513	101988	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117715411	117708286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_117708417_117709155_117709242_117714007_117714068_117714319_117714470_117715358
ENSMUSG00000008683.17_117708287_117715411_3	chr7	-	805	6	NNC	ENSMUSG00000008683.17	novel	5179	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	126	junction_2	4662.78583681473	1626	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117715411	117708286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_117708417_117709155_117709242_117711545_117711864_117714007_117714088_117714331_117714470_117715358
ENSMUSG00000008683.17_117708287_117715411_4	chr7	-	486	5	NNC	ENSMUSG00000008683.17	novel	5179	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3600.67732343513	130230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117715411	117708286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_117708417_117709155_117709242_117714007_117714068_117714312_117714470_117715358
ENSMUSG00000008683.17_117708287_117715411_5	chr7	-	407	4	NIC	ENSMUSG00000008683.17	novel	5179	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	50	junction_2	3923.91168209593	1031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117715411	117708286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_117708417_117709155_117709242_117714331_117714470_117715358
ENSMUSG00000008683.17_117708287_117715411_6	chr7	-	526	5	NIC	ENSMUSG00000008683.17	novel	5179	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_4	4285.46860769041	192525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117715411	117708286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117715319
ENSMUSG00000008683.17_117708287_117715411_7	chr7	-	457	5	NNC	ENSMUSG00000008683.17	novel	5179	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4270.61149017328	25055	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117715411	117708286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_117708417_117709155_117709242_117714037_117714088_117714331_117714470_117715358
ENSMUSG00000008683.17_117708287_117715411_8	chr7	-	883	5	NIC	ENSMUSG00000008683.17	novel	5179	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	4290.87441554749	94787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117715411	117708286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117714962
ENSMUSG00000008683.17_117708287_117715411_9	chr7	-	401	4	NIC	ENSMUSG00000008683.17	novel	5179	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	4720.99794064301	1578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117715411	117708286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_117708417_117714007_117714088_117714331_117714470_117715358
ENSMUSG00000008690.16_89239939_89255783_1	chr15	+	2055	20	NNC	ENSMUSG00000008690.16	novel	3299	20	NA	NA	0	17	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	319.412835616834	1213	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTTCACCGGACAGACTA	NA	False	NA	15	True	AATAAA	-15	NA	89239938	89255783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_89240147_89244558_89244665_89247639_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254516_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
ENSMUSG00000008690.16_89239939_89255783_2	chr15	+	2031	20	NIC	ENSMUSG00000008690.16	novel	3299	20	NA	NA	0	17	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	318.874344602117	647	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTTCACCGGACAGACTA	NA	False	NA	15	True	AATAAA	-15	NA	89239938	89255783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_89240130_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254507_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
ENSMUSG00000008690.16_89239939_89255783_3	chr15	+	2048	20	NIC	ENSMUSG00000008690.16	novel	3299	20	NA	NA	0	17	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	237.547405970056	1122	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTTCACCGGACAGACTA	NA	False	NA	15	True	AATAAA	-15	NA	89239938	89255783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254507_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
ENSMUSG00000008690.16_89239939_89255783_4	chr15	+	1955	20	NIC	ENSMUSG00000008690.16	novel	3223	20	NA	NA	0	17	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	297.898158804969	402	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTTCACCGGACAGACTA	NA	False	NA	15	True	AATAAA	-15	NA	89239938	89255783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_89240054_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254507_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
ENSMUSG00000008855.18_102086573_102092987_1	chr11	-	1686	15	ISM	ENSMUSG00000008855.18	ENSMUST00000008999.12	4269	29	27963	3	-1345	0	3prime_fragment	FALSE	canonical	0	0	junction_1	72.9093650377239	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACGTGTGCCGTGTGGGTC	8332	False	NA	-3	True	ATTAAA	-22	NA	102092987	102086572	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_102086695_102086773_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878
ENSMUSG00000008859.9_18056896_18067829_1	chr13	-	489	3	ISM	ENSMUSG00000008859.9	ENSMUST00000009003.9	2688	5	50995	1740	50705	-1740	3prime_fragment	FALSE	canonical	3	817	junction_1	49.5	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAGGCTCAATTGACTGA	NA	False	NA	-19	True	AATAAA	-22	NA	18067829	18056895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_18057087_18063091_18063267_18067706
ENSMUSG00000008859.9_18056896_18118665_1	chr13	-	789	5	FSM	ENSMUSG00000008859.9	ENSMUST00000009003.9	2688	5	159	1740	-131	-1740	multi-exon	FALSE	canonical	3	817	junction_1	45.9292934846597	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAGGCTCAATTGACTGA	NA	False	NA	-19	True	AATAAA	-22	NA	18118665	18056895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_18057087_18063091_18063267_18067706_18067916_18071537_18071688_18118601
ENSMUSG00000008892.13_23067436_23083774_1	chr8	-	1020	9	FSM	ENSMUSG00000008892.13	ENSMUST00000009036.11	1354	9	0	334	0	-334	multi-exon	FALSE	canonical	3	2053	junction_8	117.712573669936	945	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAACTTTTTATTCTTC	NA	False	NA	NA	False	AATGAA	-42	NA	23083774	23067435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
ENSMUSG00000008958.15_95018353_95030244_1	chr3	+	1318	6	FSM	ENSMUSG00000008958.15	ENSMUST00000009102.9	1456	6	20	118	0	-118	multi-exon	FALSE	canonical	0	0	junction_1	358.969413738831	3622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTCTGATGTGTAAGG	2580	False	NA	45	True	AATAAA	-13	NA	95018352	95030244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95018526_95025535_95025689_95025959_95026075_95026441_95026619_95028572_95028718_95029689
ENSMUSG00000008958.15_95018353_95030244_2	chr3	+	1307	6	NNC	ENSMUSG00000008958.15	novel	1456	6	NA	NA	0	-118	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	358.969413738831	3546	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTCTGATGTGTAAGG	2580	False	NA	45	True	AATAAA	-13	NA	95018352	95030244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_95018515_95025535_95025689_95025959_95026075_95026441_95026619_95028572_95028718_95029689
ENSMUSG00000008958.15_95018384_95030244_1	chr3	+	1287	6	FSM	ENSMUSG00000008958.15	ENSMUST00000009102.9	1456	6	51	118	0	-118	multi-exon	FALSE	canonical	0	0	junction_1	358.969413738831	3523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTCTGATGTGTAAGG	2611	False	NA	45	True	AATAAA	-13	NA	95018383	95030244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95018526_95025535_95025689_95025959_95026075_95026441_95026619_95028572_95028718_95029689
ENSMUSG00000008976.17_84624759_84631893_1	chr16	+	681	5	NIC	ENSMUSG00000008976.17	novel	2202	10	NA	NA	-7054	-22573	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	6402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGGAGGAAGTGGAGGGT	NA	False	NA	NA	False	NA	NA	NA	84624758	84631893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_84624884_84625312_84625438_84628216_84628396_84630707_84630763_84631696
ENSMUSG00000008976.17_84624759_84631893_2	chr16	+	619	4	NNC	ENSMUSG00000008976.17	novel	2202	10	NA	NA	-7054	-22573	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10853	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGGAGGAAGTGGAGGGT	NA	False	NA	NA	False	NA	NA	NA	84624758	84631893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_84624884_84625312_84625438_84628216_84628396_84631703
ENSMUSG00000008976.17_84624759_84631893_3	chr16	+	676	5	NNC	ENSMUSG00000008976.17	novel	2202	10	NA	NA	-7054	-22573	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4817	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGGAGGAAGTGGAGGGT	NA	False	NA	NA	False	NA	NA	NA	84624758	84631893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_84624884_84625312_84625438_84628216_84628391_84630707_84630763_84631696
ENSMUSG00000008976.17_84624759_84631893_4	chr16	+	634	4	NNC	ENSMUSG00000008976.17	novel	2202	10	NA	NA	-7054	-22573	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	12643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGGAGGAAGTGGAGGGT	NA	False	NA	NA	False	NA	NA	NA	84624758	84631893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_84624884_84625312_84625438_84628208_84628396_84631696
ENSMUSG00000008976.17_84624759_84631893_5	chr16	+	488	4	NNC	ENSMUSG00000008976.17	novel	2202	10	NA	NA	-7054	-22573	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2562	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGGAGGAAGTGGAGGGT	NA	False	NA	NA	False	NA	NA	NA	84624758	84631893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_84624884_84625312_84625438_84628216_84628391_84631829
ENSMUSG00000008976.17_84624759_84631893_6	chr16	+	621	4	NNC	ENSMUSG00000008976.17	novel	2202	10	NA	NA	-7054	-22573	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	18672	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGGAGGAAGTGGAGGGT	NA	False	NA	NA	False	NA	NA	NA	84624758	84631893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_84624884_84625312_84625438_84628216_84628391_84631696
ENSMUSG00000008976.17_84624759_84632391_1	chr16	+	687	5	NIC	ENSMUSG00000008976.17	novel	4987	10	NA	NA	-7054	-22075	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	75714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCGCGGGCTAGGGCCA	NA	False	NA	NA	False	NA	NA	NA	84624758	84632391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_84624884_84625312_84625438_84628216_84628396_84631696_84631872_84632308
ENSMUSG00000008976.17_84632258_84658203_1	chr16	+	2277	10	FSM	ENSMUSG00000008976.17	ENSMUST00000009120.8	4987	10	246	2464	246	0	multi-exon	FALSE	canonical	3	317	junction_1	99.7045016753055	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATGATATCATTCTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	84632257	84658203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_84632432_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
ENSMUSG00000008999.8_172711479_172714750_1	chr2	-	687	2	ISM	ENSMUSG00000008999.8	ENSMUST00000009143.8	3670	7	67364	1674	67135	-1674	3prime_fragment	FALSE	canonical	3	105	junction_1	0	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTAGGACGTTACAGATA	NA	False	NA	-38	True	AATAAA	-16	NA	172714750	172711478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_172712080_172714664
ENSMUSG00000009013.6_115436481_115438993_1	chr5	-	653	3	FSM	ENSMUSG00000009013.6	ENSMUST00000009157.4	2030	3	65	1312	0	0	multi-exon	FALSE	canonical	3	3784	junction_1	210.5	92024	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTGCTAGTTTGTTCA	NA	False	NA	-1	True	AATAAA	-16	NA	115438993	115436480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_115436893_115438571_115438710_115438890
ENSMUSG00000009013.6_115436564_115438938_1	chr5	-	515	3	FSM	ENSMUSG00000009013.6	ENSMUST00000009157.4	2030	3	120	1395	0	0	multi-exon	FALSE	canonical	3	3784	junction_1	210.5	7250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTCTAGTCCATACT	NA	False	NA	-4	True	AGTAAA	-17	NA	115438938	115436563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_115436893_115438571_115438710_115438890
ENSMUSG00000009075.3_4654678_4687533_1	chr11	-	647	6	NNC	ENSMUSG00000009075.3	novel	2628	5	NA	NA	9245	32214	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	895	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTCTGCTCGCTGGGATT	NA	False	NA	NA	False	NA	NA	NA	4687533	4654677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_4654713_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ENSMUSG00000009075.3_4654678_4687669_1	chr11	-	777	6	NNC	ENSMUSG00000009075.3	novel	2628	5	NA	NA	9109	32214	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2505	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTCTGCTCGCTGGGATT	NA	False	NA	NA	False	NA	NA	NA	4687669	4654677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_4654713_4672357_4672512_4678590_4678648_4680186_4680268_4682066_4682179_4687331
ENSMUSG00000009075.3_4654678_4687669_2	chr11	-	783	6	NNC	ENSMUSG00000009075.3	novel	2628	5	NA	NA	9109	32214	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5628	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTCTGCTCGCTGGGATT	NA	False	NA	NA	False	NA	NA	NA	4687669	4654677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_4654713_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ENSMUSG00000009075.3_4654678_4687669_3	chr11	-	761	6	NNC	ENSMUSG00000009075.3	novel	2628	5	NA	NA	9109	32214	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	598	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTCTGCTCGCTGGGATT	NA	False	NA	NA	False	NA	NA	NA	4687669	4654677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_4654713_4672357_4672490_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ENSMUSG00000009075.3_4654678_4687669_4	chr11	-	778	6	NNC	ENSMUSG00000009075.3	novel	2628	5	NA	NA	9109	32214	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1404	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTCTGCTCGCTGGGATT	NA	False	NA	NA	False	NA	NA	NA	4687669	4654677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_4654713_4672357_4672512_4678584_4678648_4680191_4680268_4682066_4682179_4687331
ENSMUSG00000009076.11_4654678_4687533_1	chr11	+	656	6	FSM	ENSMUSG00000009076.11	ENSMUST00000009220.5	792	6	0	136	0	-136	multi-exon	FALSE	canonical	3	156	junction_1	205.698225563567	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCAGAGCTGCCTTCCC	NA	False	NA	13	True	AGTAAA	-18	NA	4654677	4687533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_4654722_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ENSMUSG00000009076.11_4654678_4687533_2	chr11	+	645	6	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	0	-136	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	264.574072803818	297	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCAGAGCTGCCTTCCC	NA	False	NA	13	True	AGTAAA	-18	NA	4654677	4687533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_4654713_4672357_4672512_4678584_4678648_4680186_4680268_4682068_4682179_4687331
ENSMUSG00000009076.11_4654678_4687669_1	chr11	+	783	6	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	267.492803641519	2258	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654677	4687669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_4654722_4672366_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ENSMUSG00000009076.11_4654678_4687669_2	chr11	+	770	6	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	291.453323878799	740	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654677	4687669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_4654722_4672357_4672490_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ENSMUSG00000009076.11_4654678_4687669_3	chr11	+	629	5	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	290.684106892689	126	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654677	4687669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_4654713_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ENSMUSG00000009076.11_4654678_4687669_4	chr11	+	711	6	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	265.110844742345	218	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654677	4687669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_4654713_4672429_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ENSMUSG00000009076.11_4654678_4687669_5	chr11	+	781	6	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	264.574072803818	3737	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654677	4687669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_4654713_4672357_4672512_4678584_4678648_4680186_4680268_4682068_4682179_4687331
ENSMUSG00000009079.17_5019689_5020252_1	chr11	-	440	2	ISM	ENSMUSG00000009079.17	ENSMUST00000130118.2	649	3	639	-285	639	0	3prime_fragment	FALSE	canonical	3	4970	junction_1	0	3021	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTCCTCCTCTGTTCTC	NA	False	NA	-13	True	AATAAA	-23	NA	5020252	5019688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_5020104_5020227
ENSMUSG00000009079.17_5019689_5049067_1	chr11	-	2389	17	FSM	ENSMUSG00000009079.17	ENSMUST00000079949.13	2588	17	199	0	0	0	multi-exon	FALSE	canonical	3	2776	junction_9	796.06296616144	8278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTCCTCCTCTGTTCTC	NA	False	NA	-13	True	AATAAA	-23	NA	5049067	5019688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ENSMUSG00000009079.17_5019897_5020252_1	chr11	-	232	2	ISM	ENSMUSG00000009079.17	ENSMUST00000130118.2	649	3	639	-77	639	0	3prime_fragment	FALSE	canonical	3	4970	junction_1	0	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCTGAGTTTTTTTTTG	NA	False	NA	NA	False	ATTAAA	-16	NA	5020252	5019896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_5020104_5020227
ENSMUSG00000009079.17_5019897_5020378_1	chr11	-	358	2	ISM	ENSMUSG00000009079.17	ENSMUST00000130118.2	649	3	513	-77	513	0	3prime_fragment	FALSE	canonical	3	4970	junction_1	0	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCTGAGTTTTTTTTTG	NA	False	NA	NA	False	ATTAAA	-16	NA	5020378	5019896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_5020104_5020227
ENSMUSG00000009079.17_5019897_5049067_1	chr11	-	2181	17	FSM	ENSMUSG00000009079.17	ENSMUST00000079949.13	2588	17	199	208	0	0	multi-exon	FALSE	canonical	3	2776	junction_9	796.06296616144	2726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCTGAGTTTTTTTTTG	NA	False	NA	NA	False	ATTAAA	-16	NA	5049067	5019896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ENSMUSG00000009112.5_120813173_120865964_1	chr6	+	3112	7	FSM	ENSMUSG00000009112.5	ENSMUST00000009256.4	6925	7	-26	3839	0	-3839	multi-exon	FALSE	canonical	3	188	junction_2	15.192286054296	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCAAGACCTGATGTTTT	NA	False	NA	10	True	AATAAA	-21	NA	120813172	120865964	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_120813319_120825416_120825578_120839815_120839924_120842528_120842686_120847726_120847797_120853163_120853308_120863638
ENSMUSG00000009207.16_74351677_74409265_1	chr2	-	2169	13	FSM	ENSMUSG00000009207.16	ENSMUST00000064503.13	3195	13	27	999	-5	0	multi-exon	FALSE	canonical	3	222	junction_6	31.6842056692114	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTGTTAAATATCTAG	NA	False	NA	-14	True	AATAAA	-18	NA	74409265	74351676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
ENSMUSG00000009207.16_74352384_74409265_1	chr2	-	1462	13	FSM	ENSMUSG00000009207.16	ENSMUST00000064503.13	3195	13	27	1706	-5	0	multi-exon	FALSE	canonical	3	222	junction_6	31.6842056692114	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTGGATATTTGTAGTC	NA	False	NA	NA	False	AGTAAA	-16	NA	74409265	74352383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
ENSMUSG00000009291.14_77417590_77433105_1	chr10	+	797	6	FSM	ENSMUSG00000009291.14	ENSMUST00000009435.12	2294	6	36	1461	0	2	multi-exon	FALSE	canonical	3	637	junction_4	46.3188946327522	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCGTTGATGTCCTTTTTG	1327	False	NA	10	True	NA	NA	NA	77417589	77433105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_77417762_77423084_77423138_77425467_77425577_77428679_77428852_77429697_77429745_77432861
ENSMUSG00000009535.14_68433463_68454978_1	chr18	+	1999	12	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	327.063064154123	2989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	88	True	AATAAA	-18	NA	68433462	68454978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388_68454700_68454726
ENSMUSG00000009535.14_68433463_68454978_2	chr18	+	2026	11	FSM	ENSMUSG00000009535.14	ENSMUST00000009679.11	5008	11	37	2945	0	1	multi-exon	FALSE	canonical	3	765	junction_7	139.06832852954	3141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	88	True	AATAAA	-18	NA	68433462	68454978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
ENSMUSG00000009535.14_68433463_68454978_3	chr18	+	1829	11	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	430.6471989924	1746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	88	True	AATAAA	-18	NA	68433462	68454978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68451064_68451183_68452188_68452291_68453296_68453331_68454388_68454689_68454720
ENSMUSG00000009535.14_68433463_68454978_4	chr18	+	1994	12	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	327.063064154123	3547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	88	True	AATAAA	-18	NA	68433462	68454978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388_68454689_68454720
ENSMUSG00000009535.14_68433463_68454978_6	chr18	+	1998	12	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	327.063064154123	1078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	88	True	AATAAA	-18	NA	68433462	68454978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388_68454694_68454721
ENSMUSG00000009535.14_68452252_68454978_1	chr18	+	631	4	NNC	ENSMUSG00000009535.14	novel	3791	3	NA	NA	184	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	515.286543800847	1468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	9922	False	NA	88	True	AATAAA	-18	NA	68452251	68454978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_68452291_68453296_68453331_68454388_68454689_68454720
ENSMUSG00000009535.14_68452252_68454978_2	chr18	+	663	3	FSM	ENSMUSG00000009535.14	ENSMUST00000148937.2	3791	3	184	2944	184	1	multi-exon	FALSE	canonical	3	1085	junction_2	8	1092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	9922	False	NA	88	True	AATAAA	-18	NA	68452251	68454978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_68452291_68453296_68453331_68454388
ENSMUSG00000009535.14_68452252_68454978_3	chr18	+	632	4	NNC	ENSMUSG00000009535.14	novel	3791	3	NA	NA	184	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	515.286543800847	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	9922	False	NA	88	True	AATAAA	-18	NA	68452251	68454978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_68452291_68453296_68453331_68454388_68454696_68454726
ENSMUSG00000009535.14_68452252_68454978_4	chr18	+	637	4	NNC	ENSMUSG00000009535.14	novel	3791	3	NA	NA	184	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	515.286543800847	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	9922	False	NA	88	True	AATAAA	-18	NA	68452251	68454978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_68452291_68453296_68453331_68454388_68454689_68454714
ENSMUSG00000009563.17_32647303_32652256_1	chr2	+	1393	5	FSM	ENSMUSG00000009563.17	ENSMUST00000156617.8	915	5	36	-514	0	0	multi-exon	FALSE	canonical	3	24	junction_1	95.4214336509361	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGACCAAAGTTTCTTAC	646	False	NA	9	True	AATAAA	-20	NA	32647302	32652256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_32647463_32648768_32648949_32649538_32649715_32650600_32650729_32651507
ENSMUSG00000009569.15_13074370_13150790_1	chr16	+	608	4	NIC	ENSMUSG00000009569.15	novel	667	5	NA	NA	0	4	combination_of_known_splicesites	FALSE	canonical	3	4	junction_3	23.2139804619735	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTATGTGTATGAGTG	NA	False	NA	NA	False	AATAAA	-23	NA	13074369	13150790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_13074419_13082942_13083004_13144245_13144436_13150482
ENSMUSG00000009575.15_103106605_103148269_1	chr15	-	2195	5	FSM	ENSMUSG00000009575.15	ENSMUST00000118152.8	8803	5	-26	6634	-26	1077	multi-exon	FALSE	canonical	3	412	junction_4	23.5902522241709	1522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTCGTCAGCTACTGAGC	NA	False	NA	-23	True	AATAAA	-23	NA	103148269	103106604	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103148159
ENSMUSG00000009575.15_103107351_103148269_1	chr15	-	1449	5	FSM	ENSMUSG00000009575.15	ENSMUST00000118152.8	8803	5	-26	7380	-26	331	multi-exon	FALSE	canonical	3	412	junction_4	23.5902522241709	1301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGAGTCTGTAAGCTGT	NA	False	NA	-6	True	ATTAAA	-13	NA	103148269	103107350	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103148159
ENSMUSG00000009575.15_103107892_103148269_1	chr15	-	903	5	NNC	ENSMUSG00000009575.15	novel	8803	5	NA	NA	-26	-210	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	192.458437071488	706	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTAAGTGTAGCTCTGTG	NA	False	NA	-11	True	AATATA	-14	NA	103148269	103107891	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_103108219_103109227_103109324_103113918_103114106_103121498_103121682_103148159
ENSMUSG00000009575.15_103107892_103148269_2	chr15	-	908	5	FSM	ENSMUSG00000009575.15	ENSMUST00000118152.8	8803	5	-26	7921	-26	-210	multi-exon	FALSE	canonical	3	412	junction_4	23.5902522241709	973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTAAGTGTAGCTCTGTG	NA	False	NA	-11	True	AATATA	-14	NA	103148269	103107891	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103148159
ENSMUSG00000009585.19_79775860_79792114_1	chr15	+	1945	9	NIC	ENSMUSG00000009585.19	novel	826	5	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	95	junction_1	219.175122618878	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAAGATTAAGTTGTGCAT	7502	False	NA	1	True	NA	NA	NA	79775859	79792114	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_79776024_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
ENSMUSG00000009585.19_79776643_79792114_1	chr15	+	1810	8	FSM	ENSMUSG00000009585.19	ENSMUST00000175752.8	1977	8	-6	173	0	-5	multi-exon	FALSE	canonical	3	31	junction_4	224.554434107971	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAAGATTAAGTTGTGCAT	8285	False	NA	1	True	NA	NA	NA	79776642	79792114	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79789644_79789802_79790541_79790804_79791051_79791165_79791504
ENSMUSG00000009633.4_192954469_192955417_1	chr1	-	763	2	FSM	ENSMUSG00000009633.4	ENSMUST00000009777.4	871	2	108	0	108	0	multi-exon	FALSE	canonical	3	79	junction_1	0	791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCATTATTTAATTCTTG	NA	False	NA	-1	True	AATAAA	-16	NA	192955417	192954468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_192955111_192955296
ENSMUSG00000009640.12_117531883_117532696_1	chr4	-	478	3	ISM	ENSMUSG00000009640.12	ENSMUST00000129510.2	1862	8	6484	0	6484	0	3prime_fragment	FALSE	canonical	3	228	junction_1	25	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTGATTGTTTCCTCA	NA	False	NA	-40	True	AATAGA	-15	NA	117532696	117531882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_117531992_117532217_117532514_117532623
ENSMUSG00000009640.12_117531883_117539450_1	chr4	-	1550	11	NNC	ENSMUSG00000009640.12	novel	1566	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	72.4795833321357	1094	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTGATTGTTTCCTCA	NA	False	NA	-40	True	AATAGA	-15	NA	117539450	117531882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539191_117539412
ENSMUSG00000009687.15_30732158_30736466_1	chr7	-	603	5	NNC	ENSMUSG00000009687.15	novel	817	9	NA	NA	897	0	intron_retention	FALSE	canonical	3	10	junction_4	35.9513560244951	446	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCATGGCCTCTGTCTTCT	7757	False	NA	-10	True	GATAAA	-16	NA	30736466	30732157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30736335
ENSMUSG00000009687.15_30732158_30736466_2	chr7	-	579	5	NNC	ENSMUSG00000009687.15	novel	817	9	NA	NA	897	0	intron_retention	FALSE	canonical	3	7	junction_4	37.2449661028172	434	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCATGGCCTCTGTCTTCT	7757	False	NA	-10	True	GATAAA	-16	NA	30736466	30732157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30736359
ENSMUSG00000009687.15_30732158_30736466_3	chr7	-	573	4	NNC	ENSMUSG00000009687.15	novel	817	9	NA	NA	897	0	intron_retention	FALSE	canonical	0	0	junction_2	39.8078719183363	162	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCATGGCCTCTGTCTTCT	7757	False	NA	-10	True	GATAAA	-16	NA	30736466	30732157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_30732444_30734633_30734709_30735860_30735942_30736335
ENSMUSG00000009687.15_30732158_30736466_4	chr7	-	511	6	NNC	ENSMUSG00000009687.15	novel	500	7	NA	NA	897	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	40.8538859840775	111	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCATGGCCTCTGTCTTCT	7757	False	NA	-10	True	GATAAA	-16	NA	30736466	30732157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_30732306_30732397_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30736335
ENSMUSG00000009733.10_100434963_100449862_1	chr15	-	427	3	NNC	ENSMUSG00000009733.10	novel	371	2	NA	NA	0	8984	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	36.5	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTTTAAAGTGTTTGAAC	NA	False	NA	NA	False	NA	NA	NA	100449862	100434962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_100435161_100449205_100449363_100449790
ENSMUSG00000009828.16_78074194_78075224_1	chr9	+	464	2	ISM	ENSMUSG00000009828.16	ENSMUST00000142402.2	3952	7	11589	2511	11589	4	3prime_fragment	FALSE	canonical	3	114	junction_1	0	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGTCTCATTATTTTCTT	NA	False	NA	7	True	TATAAA	-18	NA	78074193	78075224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_78074315_78074881
ENSMUSG00000009863.15_140688714_140706504_1	chr4	+	942	8	FSM	ENSMUSG00000009863.15	ENSMUST00000010007.9	1142	8	200	0	0	0	multi-exon	FALSE	canonical	3	2820	junction_2	205.868890316143	24590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCGTTACTCTCCATTAT	NA	False	NA	NA	False	AATAAA	-14	NA	140688713	140706504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425_140703528_140704688_140704812_140706335
ENSMUSG00000009905.6_106652567_106687413_1	chr1	-	1096	10	FSM	ENSMUSG00000009905.6	ENSMUST00000010049.6	5518	10	44	4378	0	-4378	multi-exon	FALSE	canonical	3	165	junction_2	12.4017123469222	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGCCTCCAGACTTTT	8305	False	NA	NA	False	NA	NA	NA	106687413	106652566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_106652752_106655358_106655461_106662276_106662361_106667060_106667145_106671398_106671591_106675217_106675314_106675500_106675567_106680941_106680999_106683173_106683264_106687273
ENSMUSG00000009907.18_106698887_106724397_1	chr1	-	2845	11	FSM	ENSMUSG00000009907.18	ENSMUST00000094646.6	4633	11	61	1727	0	-1727	multi-exon	TRUE	canonical	3	455	junction_4	35.0793386482699	1624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGGCTTTTATATGTTT	85	False	NA	-1	True	AGTAAA	-14	NA	106724397	106698886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_106700279_106701736_106701878_106704999_106705220_106706698_106706781_106707691_106707841_106708233_106708391_106710395_106710516_106714432_106714501_106717658_106717816_106719407_106719520_106724150
ENSMUSG00000009907.18_106699338_106724397_1	chr1	-	2394	11	FSM	ENSMUSG00000009907.18	ENSMUST00000094646.6	4633	11	61	2178	0	-2178	multi-exon	FALSE	canonical	3	455	junction_4	35.0793386482699	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCGAGAGTCATGTCTTT	85	False	NA	NA	False	TTTAAA	-4	NA	106724397	106699337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_106700279_106701736_106701878_106704999_106705220_106706698_106706781_106707691_106707841_106708233_106708391_106710395_106710516_106714432_106714501_106717658_106717816_106719407_106719520_106724150
ENSMUSG00000009907.18_106700038_106724426_1	chr1	-	1723	11	FSM	ENSMUSG00000009907.18	ENSMUST00000094646.6	4633	11	32	2878	-29	-2878	multi-exon	FALSE	canonical	3	455	junction_4	35.0793386482699	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTTGTCCTTTTCCT	56	False	NA	NA	False	NA	NA	NA	106724426	106700037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_106700279_106701736_106701878_106704999_106705220_106706698_106706781_106707691_106707841_106708233_106708391_106710395_106710516_106714432_106714501_106717658_106717816_106719407_106719520_106724150
ENSMUSG00000009927.10_44319010_44321491_1	chr9	+	467	5	NNC	ENSMUSG00000009927.10	novel	1280	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	4881.10195037965	5215	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGGTGCATCTGTTTCCT	NA	False	NA	94	True	AATAAA	-19	NA	44319009	44321491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_44319055_44319284_44319381_44319982_44320161_44321250_44321350_44321442
ENSMUSG00000009927.10_44319010_44321491_2	chr9	+	473	5	FSM	ENSMUSG00000009927.10	ENSMUST00000080300.9	1280	5	574	233	0	0	multi-exon	FALSE	canonical	3	5317	junction_4	3059.10970504492	30914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGGTGCATCTGTTTCCT	NA	False	NA	94	True	AATAAA	-19	NA	44319009	44321491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44319055_44319284_44319381_44319982_44320167_44321250_44321350_44321442
ENSMUSG00000009995.18_73326356_73333755_1	chrX	+	2565	7	NIC	ENSMUSG00000009995.18	novel	2368	9	NA	NA	0	1	intron_retention	FALSE	canonical	3	226	junction_5	12.5266382827424	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTCTGTCTTCTGTGTAG	NA	False	NA	8	True	AATAAA	-21	NA	73326355	73333755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73332789_73332904
ENSMUSG00000009995.18_73326356_73333755_2	chrX	+	2480	8	NIC	ENSMUSG00000009995.18	novel	2368	9	NA	NA	0	1	intron_retention	FALSE	canonical	3	76	junction_6	61.4664335143954	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTCTGTCTTCTGTGTAG	NA	False	NA	8	True	AATAAA	-21	NA	73326355	73333755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73332626_73332710_73332789_73332904
ENSMUSG00000010045.3_107412175_107415872_1	chr9	+	1163	2	FSM	ENSMUSG00000010045.3	ENSMUST00000010189.3	2194	2	1031	0	1031	0	multi-exon	FALSE	canonical	3	142	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTTGTGCAGCCCTCTC	NA	False	NA	33	True	AATAAA	-38	NA	107412174	107415872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_107412529_107415063
ENSMUSG00000010048.11_107464925_107470237_1	chr9	+	2075	11	ISM	ENSMUSG00000010048.11	ENSMUST00000010192.11	2056	12	84	0	0	0	intron_retention	FALSE	canonical	3	651	junction_3	29.3468908063529	837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCCTTTATCCTGAGTC	NA	False	NA	21	True	ATTAAA	-33	NA	107464924	107470237	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474
ENSMUSG00000010048.11_107464956_107470237_1	chr9	+	1934	12	NNC	ENSMUSG00000010048.11	novel	2056	12	NA	NA	0	0	intron_retention	TRUE	canonical	0	0	junction_3	205.289636150352	757	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCCTTTATCCTGAGTC	NA	False	NA	21	True	ATTAAA	-33	NA	107464955	107470237	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_107465146_107467101_107467222_107467307_107467393_107467503_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
ENSMUSG00000010048.11_107464956_107470237_2	chr9	+	1936	12	NNC	ENSMUSG00000010048.11	novel	2056	12	NA	NA	0	0	intron_retention	FALSE	canonical	1	8	junction_4	201.647060950768	742	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCCTTTATCCTGAGTC	NA	False	NA	21	True	ATTAAA	-33	NA	107464955	107470237	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467708_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
ENSMUSG00000010051.16_107454157_107455744_1	chr9	+	1114	2	ISM	ENSMUSG00000010051.16	ENSMUST00000144392.2	1332	3	-32	873	0	-873	5prime_fragment	FALSE	canonical	3	34	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGACTTCAGAGTATTACA	NA	False	NA	NA	False	NA	NA	NA	107454156	107455744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_107454278_107454751
ENSMUSG00000010057.9_107419440_107422905_1	chr9	+	1421	11	NNC	ENSMUSG00000010057.9	novel	1441	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	36.4006868067074	288	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGAGTACTGCTTCAGCC	NA	False	NA	13	True	AATAAA	-24	NA	107419439	107422905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_107419653_107420180_107420273_107420371_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107421834_107421945_107422040_107422112_107422231_107422443_107422587_107422689
ENSMUSG00000010095.14_8684951_8690720_1	chr19	-	1326	9	FSM	ENSMUSG00000010095.14	ENSMUST00000010239.6	1819	9	523	-30	0	0	multi-exon	FALSE	canonical	3	2610	junction_8	198.183902915953	3966	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCACCCCTGCCTCATGA	NA	False	NA	12	True	AATAAA	-2	NA	8690720	8684950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
ENSMUSG00000010095.14_8684951_8691030_1	chr19	-	1636	9	FSM	ENSMUSG00000010095.14	ENSMUST00000010239.6	1819	9	213	-30	213	0	multi-exon	FALSE	canonical	3	2610	junction_8	198.183902915953	5539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCACCCCTGCCTCATGA	NA	False	NA	12	True	AATAAA	-2	NA	8691030	8684950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
ENSMUSG00000010110.18_8718777_8733006_1	chr19	+	1824	11	FSM	ENSMUSG00000010110.18	ENSMUST00000176381.8	2251	11	0	427	0	0	multi-exon	FALSE	canonical	3	140	junction_1	18.8417090519942	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6549	False	NA	12	True	NA	NA	NA	8718776	8733006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ENSMUSG00000010110.18_8719252_8733006_1	chr19	+	1895	11	NNC	ENSMUSG00000010110.18	novel	2112	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_1	54.6512579910106	277	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	7024	False	NA	12	True	NA	NA	NA	8719251	8733006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8719486_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ENSMUSG00000010110.18_8719252_8733006_2	chr19	+	1928	11	NIC	ENSMUSG00000010110.18	novel	2112	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	55.2485293921929	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	7024	False	NA	12	True	NA	NA	NA	8719251	8733006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_8719519_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ENSMUSG00000010342.17_87295891_87326365_1	chr11	+	393	3	NNC	ENSMUSG00000010342.17	novel	4763	31	NA	NA	0	-49227	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_2	35.5	52	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATATTTATTTATATAAAT	NA	False	NA	NA	False	NA	NA	NA	87295890	87326365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_87295997_87324634_87324772_87326215
ENSMUSG00000010358.14_101339270_101349290_1	chr11	+	1091	7	FSM	ENSMUSG00000010358.14	ENSMUST00000010502.13	1362	7	37	234	0	0	multi-exon	FALSE	canonical	3	40	junction_3	8.33499983336666	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTGTGATGGTCTTCTT	1018	False	NA	5	True	NA	NA	NA	101339269	101349290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101339449_101347391_101347491_101348015_101348164_101348241_101348349_101348445_101348633_101348716_101348824_101349026
ENSMUSG00000010358.14_101339396_101349290_1	chr11	+	965	7	FSM	ENSMUSG00000010358.14	ENSMUST00000010502.13	1362	7	163	234	0	0	multi-exon	FALSE	canonical	3	40	junction_3	8.33499983336666	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTGTGATGGTCTTCTT	1144	False	NA	5	True	NA	NA	NA	101339395	101349290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101339449_101347391_101347491_101348015_101348164_101348241_101348349_101348445_101348633_101348716_101348824_101349026
ENSMUSG00000010362.10_101518768_101526786_1	chr11	+	984	7	FSM	ENSMUSG00000010362.10	ENSMUST00000010506.10	1124	7	0	140	0	0	multi-exon	FALSE	canonical	3	866	junction_2	120.614284210269	2556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGATCTTGCTGGGCTTTG	NA	False	NA	NA	False	NA	NA	NA	101518767	101526786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101518891_101519098_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
ENSMUSG00000010362.10_101518768_101526926_1	chr11	+	1332	6	NIC	ENSMUSG00000010362.10	novel	1124	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	866	junction_1	132.095420056866	8641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGTGTGGTTTGGGTCCC	NA	False	NA	29	True	AATAAA	-28	NA	101518767	101526926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
ENSMUSG00000010362.10_101518768_101526926_2	chr11	+	1119	7	NNC	ENSMUSG00000010362.10	novel	1124	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	12	junction_4	423.377458330297	8809	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGTGTGGTTTGGGTCCC	NA	False	NA	29	True	AATAAA	-28	NA	101518767	101526926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_101518891_101519098_101519279_101521063_101521187_101521645_101521806_101524632_101524727_101525613_101525700_101526573
ENSMUSG00000010376.16_55899722_55909337_1	chr14	-	578	4	FSM	ENSMUSG00000010376.16	ENSMUST00000010520.10	824	4	244	2	-3	0	multi-exon	FALSE	canonical	3	1795	junction_3	42.0502345085283	16402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGGACTCTTTCTTCTT	NA	False	NA	-13	True	AATAAA	-13	NA	55909337	55899721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55900083_55900871_55900955_55901268_55901317_55909251
ENSMUSG00000010392.9_76619237_76654393_1	chr11	-	2468	9	FSM	ENSMUSG00000010392.9	ENSMUST00000010536.9	4289	9	12	1809	0	-1809	multi-exon	FALSE	canonical	3	228	junction_2	27.7778576387741	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCAGTCTTTTCTACTGG	NA	False	NA	NA	False	AATAAA	-19	NA	76654393	76619236	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
ENSMUSG00000010392.9_76620523_76654393_1	chr11	-	1182	9	FSM	ENSMUSG00000010392.9	ENSMUST00000010536.9	4289	9	12	3095	0	-3095	multi-exon	FALSE	canonical	3	228	junction_2	27.7778576387741	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACACTTGTGATGAGTA	NA	False	NA	NA	False	AATAAA	-20	NA	76654393	76620522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
ENSMUSG00000010392.9_76620523_76654393_2	chr11	-	1176	9	NNC	ENSMUSG00000010392.9	novel	4289	9	NA	NA	0	-3095	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_7	80.3270657997664	347	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACACTTGTGATGAGTA	NA	False	NA	NA	False	AATAAA	-20	NA	76654393	76620522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652066_76652182_76654345
ENSMUSG00000010392.9_76620717_76654393_1	chr11	-	982	9	NNC	ENSMUSG00000010392.9	novel	4289	9	NA	NA	0	-3289	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_7	80.3270657997664	105	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTCCGTTGCTGTGTCTC	NA	False	NA	NA	False	AATACA	-35	NA	76654393	76620716	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652066_76652182_76654345
ENSMUSG00000010392.9_76620717_76654393_2	chr11	-	988	9	FSM	ENSMUSG00000010392.9	ENSMUST00000010536.9	4289	9	12	3289	0	-3289	multi-exon	FALSE	canonical	3	228	junction_2	27.7778576387741	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTCCGTTGCTGTGTCTC	NA	False	NA	NA	False	AATACA	-35	NA	76654393	76620716	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
ENSMUSG00000010392.9_76627972_76654393_1	chr11	-	798	7	ISM	ENSMUSG00000010392.9	ENSMUST00000010536.9	4289	9	12	10544	0	-10544	5prime_fragment	FALSE	canonical	3	229	junction_5	30.259984578097	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGAATTTGCCTATGAT	NA	False	NA	NA	False	AAAAAG	-4	NA	76654393	76627971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
ENSMUSG00000010406.13_54664366_54667203_1	chr14	+	403	5	NNC	ENSMUSG00000010406.13	novel	418	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	640.887080537594	13935	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCCAGACTCTCTCTGG	NA	False	NA	17	True	AATAAA	-18	NA	54664365	54667203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_54664413_54664490_54664549_54664627_54664696_54666040_54666106_54667038
ENSMUSG00000010406.13_54664366_54667203_2	chr14	+	343	4	NIC	ENSMUSG00000010406.13	novel	418	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	569.091088198248	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCCAGACTCTCTCTGG	NA	False	NA	17	True	AATAAA	-18	NA	54664365	54667203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_54664418_54664490_54664549_54664627_54664696_54667038
ENSMUSG00000010406.13_54664366_54667203_3	chr14	+	487	4	NIC	ENSMUSG00000010406.13	novel	418	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	1056	junction_1	226.233409459248	6341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCCAGACTCTCTCTGG	NA	False	NA	17	True	AATAAA	-18	NA	54664365	54667203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_54664418_54664490_54664696_54666040_54666106_54667038
ENSMUSG00000010406.13_54664366_54667203_4	chr14	+	401	5	NNC	ENSMUSG00000010406.13	novel	418	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	593.889088972007	7640	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCCAGACTCTCTCTGG	NA	False	NA	17	True	AATAAA	-18	NA	54664365	54667203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_54664418_54664490_54664549_54664627_54664696_54666040_54666106_54667045
ENSMUSG00000010406.13_54664366_54667203_5	chr14	+	403	5	NNC	ENSMUSG00000010406.13	novel	418	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	627.074307797728	14421	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCCAGACTCTCTCTGG	NA	False	NA	17	True	AATAAA	-18	NA	54664365	54667203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_54664418_54664490_54664549_54664632_54664696_54666040_54666106_54667038
ENSMUSG00000010492.11_181210945_181223775_1	chr2	+	1762	14	Genic_Genomic	ENSMUSG00000010492.11	novel	2018	2	NA	NA	-9328	-168	multi-exon	FALSE	non_canonical	0	0	junction_1	0	234	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGAGGCCGGGGAGGCGC	9766	False	NA	NA	False	NA	NA	NA	181210944	181223775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_+_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212099_181212196_181212292_181212349_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
ENSMUSG00000010517.8_109534194_109819244_1	chr4	+	2146	19	FSM	ENSMUSG00000010517.8	ENSMUST00000102724.5	4468	19	409	1913	0	-1913	multi-exon	FALSE	canonical	3	1050	junction_10	116.73236245551	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCATCCATGAGTATAT	NA	False	NA	24	True	AATAAA	-16	NA	109534193	109819244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_109534270_109567986_109568056_109577952_109578000_109584586_109584790_109593787_109593880_109600062_109600155_109614776_109614883_109651964_109652052_109687002_109687099_109697512_109697640_109698505_109698570_109699484_109699567_109719005_109719161_109740832_109740970_109748098_109748188_109782494_109782576_109783081_109783160_109792679_109792896_109818995
ENSMUSG00000010517.8_109584730_109819244_1	chr4	+	1811	16	ISM	ENSMUSG00000010517.8	ENSMUST00000102724.5	4468	19	50945	1913	50536	-1913	3prime_fragment	FALSE	canonical	3	1050	junction_7	122.804922087386	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCATCCATGAGTATAT	NA	False	NA	24	True	AATAAA	-16	NA	109584729	109819244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_109584790_109593787_109593880_109600062_109600155_109614776_109614883_109651964_109652052_109687002_109687099_109697512_109697640_109698505_109698570_109699484_109699567_109719005_109719161_109740832_109740970_109748098_109748188_109782494_109782576_109783081_109783160_109792679_109792896_109818995
ENSMUSG00000010538.15_88190064_88204203_1	chr3	-	475	4	NNC	ENSMUSG00000010538.15	novel	584	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	72.8605974904589	883	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACATGGGTCTGAGTCT	NA	False	NA	NA	False	CATAAA	-14	NA	88204203	88190063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_88190292_88194404_88194519_88202697_88202758_88204130
ENSMUSG00000010538.15_88190064_88204203_2	chr3	-	361	3	NIC	ENSMUSG00000010538.15	novel	584	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	73.5	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACATGGGTCTGAGTCT	NA	False	NA	NA	False	CATAAA	-14	NA	88204203	88190063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_88190292_88202697_88202758_88204130
ENSMUSG00000010538.15_88190064_88204203_3	chr3	-	566	4	NNC	ENSMUSG00000010538.15	novel	584	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	67.6773390598524	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACATGGGTCTGAGTCT	NA	False	NA	NA	False	CATAAA	-14	NA	88204203	88190063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_88190292_88194404_88194525_88202612_88202758_88204130
ENSMUSG00000010538.15_88190064_88204203_4	chr3	-	550	5	NNC	ENSMUSG00000010538.15	novel	584	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	82.9016736863617	380	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACATGGGTCTGAGTCT	NA	False	NA	NA	False	CATAAA	-14	NA	88204203	88190063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_88190292_88193307_88193377_88194404_88194525_88202697_88202758_88204130
ENSMUSG00000010538.15_88190064_88204203_5	chr3	-	481	4	FSM	ENSMUSG00000010538.15	ENSMUST00000107556.10	584	4	103	0	0	0	multi-exon	FALSE	canonical	3	152	junction_3	20.138409955991	1145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACATGGGTCTGAGTCT	NA	False	NA	NA	False	CATAAA	-14	NA	88204203	88190063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88190292_88194404_88194525_88202697_88202758_88204130
ENSMUSG00000010538.15_88193023_88204203_1	chr3	-	502	5	Fusion	ENSMUSG00000010538.15_ENSMUSG00000103766.6	novel	600	2	NA	NA	0	-2956	multi-exon	FALSE	canonical	3	9	junction_1	82.118816357763	128	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTTTGTTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	88204203	88193022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr3_-_88193203_88193307_88193377_88194404_88194525_88202697_88202758_88204130
ENSMUSG00000010554.15_74661656_74708965_1	chr11	+	2198	10	FSM	ENSMUSG00000010554.15	ENSMUST00000141755.8	12584	10	0	10386	0	245	multi-exon	FALSE	canonical	3	325	junction_5	30.3892443611141	782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCAGTGGATCCATTTTT	8494	False	NA	6	True	AAAAAG	-5	NA	74661655	74708965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
ENSMUSG00000010554.15_74661656_74709517_1	chr11	+	2750	10	FSM	ENSMUSG00000010554.15	ENSMUST00000141755.8	12584	10	0	9834	0	797	multi-exon	FALSE	canonical	3	325	junction_5	30.3892443611141	1375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGATCCTGTTTGAATC	8494	False	NA	101	True	AATATA	-19	NA	74661655	74709517	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
ENSMUSG00000010554.15_74661742_74708720_1	chr11	+	1867	10	FSM	ENSMUSG00000010554.15	ENSMUST00000141755.8	12584	10	86	10631	0	0	multi-exon	FALSE	canonical	3	325	junction_5	30.3892443611141	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCATATTATAAAATAGCTT	8580	False	NA	NA	False	NA	NA	NA	74661741	74708720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
ENSMUSG00000010592.10_50586425_50600627_1	chr17	-	2888	10	NIC	ENSMUSG00000010592.10	novel	2976	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	158	junction_3	120.807570689102	719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCACTGACTTACTGTCC	NA	False	NA	-5	True	AATAAA	-16	NA	50600627	50586424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_50588340_50590155_50590255_50591265_50591380_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
ENSMUSG00000010592.10_50586425_50600627_2	chr17	-	2933	11	NNC	ENSMUSG00000010592.10	novel	2976	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	163.165437516651	828	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCACTGACTTACTGTCC	NA	False	NA	-5	True	AATAAA	-16	NA	50600627	50586424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_50588340_50590155_50590255_50591271_50591380_50592023_50592075_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
ENSMUSG00000010592.10_50588132_50600627_1	chr17	-	1181	10	NIC	ENSMUSG00000010592.10	novel	2976	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	158	junction_3	120.807570689102	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAACTGGTTTTGTGTTC	NA	False	NA	74	True	NA	NA	NA	50600627	50588131	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_50588340_50590155_50590255_50591265_50591380_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
ENSMUSG00000010592.10_50588132_50600627_2	chr17	-	1232	11	FSM	ENSMUSG00000010592.10	ENSMUST00000010736.9	2976	11	37	1707	0	0	multi-exon	FALSE	canonical	3	352	junction_4	74.6324996231534	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAACTGGTTTTGTGTTC	NA	False	NA	74	True	NA	NA	NA	50600627	50588131	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_50588340_50590155_50590255_50591265_50591380_50592023_50592075_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
ENSMUSG00000010608.16_83679065_83710779_1	chr12	+	1033	10	ISM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	39	19118	0	6	5prime_fragment	FALSE	canonical	3	212	junction_1	85.0034131486117	611	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAGAAAGACAGGAAAT	4020	False	NA	-5	True	NA	NA	NA	83679064	83710779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752
ENSMUSG00000010608.16_83679065_83710779_2	chr12	+	1097	11	NIC	ENSMUSG00000010608.16	novel	1116	11	NA	NA	0	6	combination_of_known_junctions	FALSE	canonical	3	90	junction_2	131.960600180508	346	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAGAAAGACAGGAAAT	4020	False	NA	-5	True	NA	NA	NA	83679064	83710779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752
ENSMUSG00000010608.16_83679065_83710779_3	chr12	+	1215	12	NIC	ENSMUSG00000010608.16	novel	1116	11	NA	NA	0	6	combination_of_known_junctions	FALSE	canonical	3	38	junction_2	152.80430957533	341	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAGAAAGACAGGAAAT	4020	False	NA	-5	True	NA	NA	NA	83679064	83710779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_83679192_83685901_83685966_83689175_83689294_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752
ENSMUSG00000010608.16_83679065_83710902_2	chr12	+	1220	11	NIC	ENSMUSG00000010608.16	novel	1116	11	NA	NA	0	129	combination_of_known_junctions	FALSE	canonical	3	90	junction_2	131.960600180508	459	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACGGGAGCGGGAACGAGA	4020	False	NA	51	True	NA	NA	NA	83679064	83710902	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752
ENSMUSG00000010608.16_83714995_83728687_1	chr12	+	1561	9	ISM	ENSMUSG00000010608.16	ENSMUST00000182450.8	2994	18	25582	107	5245	-107	3prime_fragment	FALSE	canonical	3	467	junction_5	56.5663327430725	114	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTTGCAGAATTCTACT	NA	False	NA	3	True	ATTAAA	-13	NA	83714994	83728687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
ENSMUSG00000010663.6_10160403_10174241_1	chr19	+	3312	12	FSM	ENSMUSG00000010663.6	ENSMUST00000010807.6	3460	12	151	-3	0	0	multi-exon	FALSE	canonical	3	652	junction_7	60.0436480355873	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTTATTCATTTGAAAT	NA	False	NA	21	True	AATAAA	-22	NA	10160402	10174241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
ENSMUSG00000010751.16_143192072_143203401_1	chr7	-	646	6	FSM	ENSMUSG00000010751.16	ENSMUST00000075588.13	4170	6	-3	3527	-3	923	multi-exon	FALSE	canonical	3	105	junction_4	22.3338308402298	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTAGCTTCCTTTTATTG	NA	False	NA	-4	True	GATAAA	-16	NA	143203401	143192071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_143192174_143193638_143193713_143194488_143194601_143197012_143197142_143198517_143198609_143203263
ENSMUSG00000010751.16_143192072_143203401_2	chr7	-	691	7	FSM	ENSMUSG00000010751.16	ENSMUST00000146692.8	2298	7	-3	1610	-3	923	multi-exon	FALSE	canonical	3	15	junction_2	62.0232931154811	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTAGCTTCCTTTTATTG	NA	False	NA	-4	True	GATAAA	-16	NA	143203401	143192071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_143192174_143192981_143193027_143193638_143193713_143194488_143194601_143197012_143197142_143198517_143198609_143203263
ENSMUSG00000010751.16_143192072_143239609_1	chr7	-	599	6	Fusion	ENSMUSG00000010751.16_ENSMUSG00000037613.17	novel	4170	6	NA	NA	0	923	multi-exon	FALSE	canonical	1	2	junction_5	72.2811178662865	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTAGCTTCCTTTTATTG	3107	False	NA	-4	True	GATAAA	-16	NA	143239609	143192071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr7_-_143192174_143193638_143193713_143194488_143194601_143197012_143197142_143235196_143235288_143239518
ENSMUSG00000010755.18_143111444_143153793_1	chr7	-	2461	22	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_21	315.496333588738	1480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTCTGGTCTGCCCTCTC	NA	False	NA	-3	True	AATAAA	-15	NA	143153793	143111443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142315_143153713
ENSMUSG00000010911.13_102904040_102922986_1	chr2	+	593	4	NIC	ENSMUSG00000010911.13	novel	837	6	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	1	4	junction_2	180.75397644312	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTGGAAATTTTCTTGA	4613	False	NA	22	True	AATAAA	-44	NA	102904039	102922986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_102904187_102913299_102913401_102922093_102922262_102922809
ENSMUSG00000010911.13_102904040_102922986_2	chr2	+	890	7	NNC	ENSMUSG00000010911.13	novel	919	7	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	127.610627387464	2603	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTGGAAATTTTCTTGA	4613	False	NA	22	True	AATAAA	-44	NA	102904039	102922986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_102904187_102913305_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093_102922262_102922809
ENSMUSG00000010911.13_102904040_102922986_3	chr2	+	857	7	NNC	ENSMUSG00000010911.13	novel	919	7	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_6	133.735331490556	2248	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTGGAAATTTTCTTGA	4613	False	NA	22	True	AATAAA	-44	NA	102904039	102922986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093_102922223_102922809
ENSMUSG00000010914.11_102870965_102903807_1	chr2	-	1077	5	FSM	ENSMUSG00000010914.11	ENSMUST00000111183.2	2078	5	0	1001	0	-1001	multi-exon	FALSE	canonical	3	362	junction_1	7.44983221287567	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAGTA	NA	False	NA	NA	False	NA	NA	NA	102903807	102870964	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
ENSMUSG00000010914.11_102888682_102903820_1	chr2	-	427	2	ISM	ENSMUSG00000010914.11	ENSMUST00000111183.2	2078	5	-13	18718	-13	-18718	5prime_fragment	FALSE	canonical	3	381	junction_1	0	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGACTCTTTTCACTGT	NA	False	NA	NA	False	AATAAA	-18	NA	102903820	102888681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_102888923_102903634
ENSMUSG00000011096.18_44498768_44504835_1	chr7	+	1462	5	FSM	ENSMUSG00000011096.18	ENSMUST00000054343.15	1592	5	120	10	0	3	multi-exon	FALSE	canonical	3	159	junction_1	63.711753232822	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGAGTTCGTGTTGTGT	1520	False	NA	9	True	ATTAAA	-14	NA	44498767	44504835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44498773_44501994_44502384_44503203_44503282_44503362_44503533_44504015
ENSMUSG00000011096.18_44499410_44504835_1	chr7	+	1478	5	FSM	ENSMUSG00000011096.18	ENSMUST00000107882.8	1160	5	357	-675	-21	3	multi-exon	FALSE	canonical	3	55	junction_1	107.27622057101	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGAGTTCGTGTTGTGT	2162	False	NA	9	True	ATTAAA	-14	NA	44499409	44504835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44499431_44501994_44502384_44503203_44503282_44503362_44503533_44504015
ENSMUSG00000011114.19_37560478_37568533_1	chr9	-	1485	9	NNC	ENSMUSG00000011114.19	novel	1984	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	569.500823089835	6151	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTATTTGTTTCTTCTTGT	NA	False	NA	-20	True	AATAAA	-18	NA	37568533	37560477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_37560800_37561326_37561470_37562249_37562356_37562585_37562684_37563910_37564058_37564328_37564466_37565511_37565733_37566317_37566389_37568293
ENSMUSG00000011114.19_37560478_37568533_2	chr9	-	1477	9	NNC	ENSMUSG00000011114.19	novel	1984	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	557.119545070894	5028	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTATTTGTTTCTTCTTGT	NA	False	NA	-20	True	AATAAA	-18	NA	37568533	37560477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37564058_37564328_37564466_37565511_37565720_37566317_37566389_37568293
ENSMUSG00000011114.19_37560478_37568533_3	chr9	-	1480	9	NNC	ENSMUSG00000011114.19	novel	1984	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	568.47355919163	3833	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTATTTGTTTCTTCTTGT	NA	False	NA	-20	True	AATAAA	-18	NA	37568533	37560477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_37560800_37561326_37561470_37562244_37562356_37562595_37562684_37563910_37564058_37564328_37564466_37565511_37565733_37566317_37566389_37568293
ENSMUSG00000011114.19_37560478_37568533_4	chr9	-	1415	9	NNC	ENSMUSG00000011114.19	novel	1984	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	41	junction_7	543.684981744944	305	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTATTTGTTTCTTCTTGT	NA	False	NA	-20	True	AATAAA	-18	NA	37568533	37560477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37564058_37564328_37564466_37565511_37565658_37566317_37566389_37568293
ENSMUSG00000011179.9_17595077_17601080_1	chr12	+	1921	12	FSM	ENSMUSG00000011179.9	ENSMUST00000171737.3	2208	12	282	5	104	2	multi-exon	FALSE	canonical	3	389	junction_11	306.963561516955	15732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCATCAGGGAATGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	17595076	17601080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_17595170_17597096_17597195_17597283_17597402_17597633_17597808_17597950_17598124_17598309_17598445_17598545_17598628_17598787_17598872_17599424_17599588_17599668_17599782_17599863_17600079_17600607
ENSMUSG00000011254.17_45838690_45846310_1	chr11	-	1198	7	NNC	ENSMUSG00000011254.17	novel	2250	6	NA	NA	0	-1020	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	47.160777017442	1027	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGGAGTCATTTTTAG	6312	False	NA	-1	True	TATAAA	-18	NA	45846310	45838689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_45838779_45838799_45839156_45841022_45841131_45842369_45842459_45843561_45843732_45844882_45845060_45846101
ENSMUSG00000011254.17_45838690_45846310_2	chr11	-	1197	7	NNC	ENSMUSG00000011254.17	novel	2250	6	NA	NA	0	-1020	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	47.160777017442	1026	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGGAGTCATTTTTAG	6312	False	NA	-1	True	TATAAA	-18	NA	45846310	45838689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_45838779_45838800_45839156_45841022_45841131_45842369_45842459_45843561_45843732_45844882_45845060_45846101
ENSMUSG00000011254.17_45842005_45846310_1	chr11	-	1010	4	ISM	ENSMUSG00000011254.17	ENSMUST00000011398.13	2250	6	11	4335	0	0	5prime_fragment	FALSE	canonical	3	110	junction_1	15.1070255914995	102	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTAGCCTTACTCTGTGTA	6312	False	NA	NA	False	AATAAA	-23	NA	45846310	45842004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_45842459_45843561_45843732_45844882_45845060_45846101
ENSMUSG00000011257.20_123177396_123192615_1	chr4	+	2317	15	FSM	ENSMUSG00000011257.20	ENSMUST00000080178.13	3019	15	692	10	508	0	multi-exon	FALSE	canonical	3	253	junction_1	59.8703105189263	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGCTGAATTTGATGCCA	NA	False	NA	-2	True	AATAAA	-21	NA	123177395	123192615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
ENSMUSG00000011257.20_123191655_123192615_1	chr4	+	542	2	ISM	ENSMUSG00000011257.20	ENSMUST00000146156.2	1146	3	682	10	682	0	3prime_fragment	FALSE	canonical	3	415	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGCTGAATTTGATGCCA	709	False	NA	-2	True	AATAAA	-21	NA	123191654	123192615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_123191887_123192305
ENSMUSG00000011305.12_56419596_56424596_1	chr17	-	1319	8	ISM	ENSMUSG00000011305.12	ENSMUST00000019808.12	1986	9	0	995	0	-989	5prime_fragment	FALSE	canonical	2	7	junction_2	3.09047252182628	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGGCCAAGGCTCTTGTT	9995	False	NA	NA	False	ATTAAA	-17	NA	56424596	56419595	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_56419984_56420898_56421099_56422092_56422274_56422550_56422634_56423257_56423454_56423828_56423890_56424082_56424198_56424501
ENSMUSG00000011306.8_70495463_70524605_1	chr8	+	2289	14	FSM	ENSMUSG00000011306.8	ENSMUST00000011450.8	2681	14	0	392	0	-392	multi-exon	FALSE	canonical	3	384	junction_4	56.2515483021626	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAGCATTCCAGTTCCT	2157	False	NA	11	True	ATTAAA	-16	NA	70495462	70524605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
ENSMUSG00000011306.8_70495463_70524605_2	chr8	+	2146	15	NNC	ENSMUSG00000011306.8	novel	2681	14	NA	NA	0	-392	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	133.476685268267	536	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAGCATTCCAGTTCCT	2157	False	NA	11	True	ATTAAA	-16	NA	70495462	70524605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_70495528_70495670_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
ENSMUSG00000011306.8_70495699_70524605_1	chr8	+	2041	14	NNC	ENSMUSG00000011306.8	novel	2681	14	NA	NA	0	-392	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_4	134.331040353177	199	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAGCATTCCAGTTCCT	2393	False	NA	11	True	ATTAAA	-16	NA	70495698	70524605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511943_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
ENSMUSG00000011306.8_70495699_70524605_2	chr8	+	2053	14	FSM	ENSMUSG00000011306.8	ENSMUST00000011450.8	2681	14	236	392	0	-392	multi-exon	FALSE	canonical	3	384	junction_4	56.2515483021626	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAGCATTCCAGTTCCT	2393	False	NA	11	True	ATTAAA	-16	NA	70495698	70524605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
ENSMUSG00000011306.8_70495699_70524997_1	chr8	+	2445	14	FSM	ENSMUSG00000011306.8	ENSMUST00000011450.8	2681	14	236	0	0	0	multi-exon	FALSE	canonical	3	384	junction_4	56.2515483021626	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGCTCCTCTGGTCTTC	2393	False	NA	NA	False	GATAAA	-14	NA	70495698	70524997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
ENSMUSG00000011306.8_70523858_70524605_1	chr8	+	332	3	ISM	ENSMUSG00000011306.8	ENSMUST00000011450.8	2681	14	28395	392	28159	-392	3prime_fragment	FALSE	canonical	3	576	junction_1	9	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAGCATTCCAGTTCCT	9782	False	NA	11	True	ATTAAA	-16	NA	70523857	70524605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_70523910_70524171_70524302_70524455
ENSMUSG00000011349.6_24573606_24577076_1	chr7	+	1060	5	ISM	ENSMUSG00000011349.6	ENSMUST00000011493.6	1619	9	4124	0	4124	0	3prime_fragment	FALSE	canonical	3	13	junction_4	5.31507290636732	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCGAGAGTTGATTATC	NA	False	NA	4	True	NA	NA	NA	24573605	24577076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_24573804_24574331_24574459_24575172_24575234_24575373_24575549_24576577
ENSMUSG00000011658.17_44545704_44550048_1	chr7	+	1497	11	FSM	ENSMUSG00000011658.17	ENSMUST00000071207.14	1698	11	201	0	0	0	multi-exon	FALSE	canonical	3	81	junction_5	12.7373466624725	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGGGCTCTTTGCTGTCG	NA	False	NA	26	True	AATAAA	-37	NA	44545703	44550048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44547049_44547926_44548125_44548199_44548296_44548408_44548516_44548597_44548663_44548735_44548811_44549556
ENSMUSG00000011752.8_41900362_41907099_1	chr19	+	1772	4	NNC	ENSMUSG00000011752.8	novel	1775	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2845.56922639781	22074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTACTGTTTGTCTTGTGT	4060	False	NA	0	True	AATAAA	-17	NA	41900361	41907099	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_41900626_41904043_41904324_41905089_41905263_41906044
ENSMUSG00000011960.13_98449014_98465604_1	chr15	-	1090	6	NNC	ENSMUSG00000011960.13	novel	2015	3	NA	NA	-43	-2481	intron_retention	FALSE	canonical	3	14	junction_1	12.5123938556936	71	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTGAATTTATTTCTA	NA	False	NA	NA	False	ATTAAA	-25	NA	98465604	98449013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_98449521_98449794_98449858_98452481_98452543_98458077_98458207_98462927_98463010_98465356
ENSMUSG00000011960.13_98457691_98465604_1	chr15	-	742	4	NNC	ENSMUSG00000011960.13	novel	2015	3	NA	NA	-43	-1212	intron_retention	FALSE	canonical	3	4	junction_1	18.8738502225228	79	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCTGTTTTTCCAGTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	98465604	98457690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_98457974_98458077_98458207_98462927_98463010_98465356
ENSMUSG00000012117.14_133723870_133728182_1	chr4	-	562	4	ISM	ENSMUSG00000012117.14	ENSMUST00000146241.8	3179	10	0	27384	0	-16365	5prime_fragment	FALSE	canonical	0	0	junction_1	33.3199973322661	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCCTGTAGTTTGAGAGT	NA	False	NA	NA	False	ACTAAA	-15	NA	133728182	133723869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_133724043_133724132_133724250_133727579_133727705_133728035
ENSMUSG00000012123.18_133809626_133819815_1	chr4	+	1145	8	ISM	ENSMUSG00000012123.18	ENSMUST00000121391.8	4761	20	13863	0	0	0	3prime_fragment	FALSE	canonical	3	103	junction_1	10.7532624380336	538	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGTGGTCTCGTCTCT	NA	False	NA	17	True	NA	NA	NA	133809625	133819815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
ENSMUSG00000012126.17_133845406_133854087_1	chr4	+	988	8	NNC	ENSMUSG00000012126.17	novel	685	3	NA	NA	-5374	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	29.7506645441127	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCTTCACAAGGCTCTC	NA	False	NA	15	True	AATAAA	-15	NA	133845405	133854087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_133845473_133850702_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
ENSMUSG00000012126.17_133845946_133854091_1	chr4	+	1218	8	NNC	ENSMUSG00000012126.17	novel	685	3	NA	NA	-4834	4	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	33.0583899011604	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCACAAGGCTCTCCAGA	NA	False	NA	19	True	AATAAA	-19	NA	133845945	133854091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_133846239_133850702_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
ENSMUSG00000012126.17_133846094_133854087_1	chr4	+	1066	8	NNC	ENSMUSG00000012126.17	novel	685	3	NA	NA	-4686	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	33.0583899011604	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCTTCACAAGGCTCTC	NA	False	NA	15	True	AATAAA	-15	NA	133846093	133854087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_133846239_133850702_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
ENSMUSG00000012396.13_122684527_122691592_1	chr6	+	2103	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	1086	junction_1	1448.71328685147	4693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684526	122691592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_122684568_122684675_122684893_122688496_122688763_122689587_122689675_122690100
ENSMUSG00000012396.13_122684527_122691592_2	chr6	+	1251	3	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	0	0	intron_retention	FALSE	canonical	1	1	junction_2	2270.5	1096	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684526	122691592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_122684893_122688496_122688557_122690767
ENSMUSG00000012396.13_122684675_122691592_1	chr6	+	1103	3	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	148	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	2270.5	874	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684674	122691592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_122684893_122688496_122688557_122690767
ENSMUSG00000012405.17_4198629_4200736_1	chr14	+	899	4	FSM	ENSMUSG00000012405.17	ENSMUST00000100799.9	802	4	-97	0	0	0	multi-exon	FALSE	canonical	3	877	junction_1	6301.70655898508	240237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198628	4200736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_4198852_4199235_4199418_4199652_4199790_4200379
ENSMUSG00000012405.17_4198667_4200736_1	chr14	+	982	3	NIC	ENSMUSG00000012405.17	novel	883	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	8735	junction_1	3718.5	11160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198666	4200736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_4198738_4199235_4199790_4200379
ENSMUSG00000012405.17_4198667_4200736_2	chr14	+	742	4	NNC	ENSMUSG00000012405.17	novel	883	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4539.72121023601	245367	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198666	4200736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_4198738_4199235_4199418_4199652_4199790_4200384
ENSMUSG00000012422.15_89997040_90237655_1	chr13	+	1468	8	NIC	ENSMUSG00000012422.15	novel	8689	4	NA	NA	-240202	-15125	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGAGATAAACCGATGCG	NA	False	NA	NA	False	NA	NA	NA	89997039	90237655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_89997583_90089080_90089229_90139191_90139284_90140572_90140726_90149036_90149204_90210127_90210304_90219659_90219809_90237615
ENSMUSG00000012422.15_90237853_90252780_1	chr13	+	482	4	FSM	ENSMUSG00000012422.15	ENSMUST00000161568.8	8689	4	611	7596	0	0	multi-exon	FALSE	canonical	3	1033	junction_1	130.199846390078	4130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGTTCTCTCACTCCAG	NA	False	NA	-32	True	AATACA	-25	NA	90237852	90252780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_90237903_90246480_90246591_90249026_90249062_90252493
ENSMUSG00000012422.15_90237853_90252821_2	chr13	+	523	4	FSM	ENSMUSG00000012422.15	ENSMUST00000161568.8	8689	4	611	7555	0	41	multi-exon	FALSE	canonical	3	1033	junction_1	130.199846390078	5895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTGTGTCAGGACTGC	NA	False	NA	9	True	NA	NA	NA	90237852	90252821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_90237903_90246480_90246591_90249026_90249062_90252493
ENSMUSG00000012422.15_90237853_90253045_1	chr13	+	747	4	FSM	ENSMUSG00000012422.15	ENSMUST00000161568.8	8689	4	611	7331	0	265	multi-exon	FALSE	canonical	3	1033	junction_1	130.199846390078	7728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGTACCTCTATTCTTG	NA	False	NA	5	True	TTTAAA	-17	NA	90237852	90253045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_90237903_90246480_90246591_90249026_90249062_90252493
ENSMUSG00000012429.10_17869998_17871921_1	chr13	+	903	2	FSM	ENSMUSG00000012429.10	ENSMUST00000049744.4	2672	2	0	1769	0	80	multi-exon	FALSE	canonical	3	374	junction_1	0	1058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGATTTTTGTGAATATG	NA	False	NA	19	True	AATAAA	-20	NA	17869997	17871921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_17870406_17871426
ENSMUSG00000012443.5_37364851_37398189_1	chr19	+	2205	16	ISM	ENSMUSG00000012443.5	ENSMUST00000012587.4	4819	22	0	12118	0	3970	5prime_fragment	TRUE	canonical	3	286	junction_7	24.0684209886916	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAATAGACAGTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	37364850	37398189	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_37365116_37372687_37372821_37372989_37373088_37373179_37373259_37375464_37375651_37375758_37375884_37378759_37378851_37379096_37379340_37382132_37382229_37386566_37386656_37390652_37390741_37391908_37392098_37392561_37392770_37395441_37395615_37397923_37398050_37398173
ENSMUSG00000012483.5_8255936_8259140_1	chr6	-	574	4	NNC	ENSMUSG00000012483.5	novel	670	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	677.807412831174	2128	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTGGTCAATTGTTTT	-15	True	NA	-11	True	AATAAA	-14	NA	8259140	8255935	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_8256185_8256694_8256804_8257686_8257762_8258999
ENSMUSG00000012777.15_43896211_43901739_1	chr7	-	2079	7	NIC	ENSMUSG00000012777.15	novel	1634	11	NA	NA	4890	5361	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	269	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGCCACCGCCGCGTGTC	NA	False	NA	NA	False	NA	NA	NA	43901739	43896210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_43896248_43896674_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000012777.15_43896211_43901739_2	chr7	-	2231	8	NNC	ENSMUSG00000012777.15	novel	1634	11	NA	NA	4890	5361	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	268	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGCCACCGCCGCGTGTC	NA	False	NA	NA	False	NA	NA	NA	43901739	43896210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_43896233_43896661_43896841_43897333_43897488_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000012777.15_43896211_43901739_3	chr7	-	1913	6	NIC	ENSMUSG00000012777.15	novel	1634	11	NA	NA	4890	5361	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	233	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGCCACCGCCGCGTGTC	NA	False	NA	NA	False	NA	NA	NA	43901739	43896210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_43896248_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000012777.15_43896211_43901739_4	chr7	-	2246	8	NNC	ENSMUSG00000012777.15	novel	1634	11	NA	NA	4890	5361	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	301	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGCCACCGCCGCGTGTC	NA	False	NA	NA	False	NA	NA	NA	43901739	43896210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_43896248_43896661_43896841_43897333_43897488_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000013089.16_22200066_22230497_1	chr16	-	3152	7	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	24767	0	-9918	0	3prime_fragment	TRUE	canonical	3	940	junction_4	61.8456860976486	973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGCATTCCTGCAACCTG	NA	False	NA	-20	True	AATAAA	-15	NA	22230497	22200065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
ENSMUSG00000013089.16_22201547_22230497_1	chr16	-	1671	7	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	24767	1481	-9918	782	3prime_fragment	FALSE	canonical	3	940	junction_4	61.8456860976486	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTATTTTGTTTTGCTTTG	NA	False	NA	NA	False	AAAAAG	-14	NA	22230497	22201546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
ENSMUSG00000013089.16_22201855_22230497_1	chr16	-	1363	7	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	24767	1789	-9918	474	3prime_fragment	FALSE	canonical	3	940	junction_4	61.8456860976486	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTTGACTTGCACAATTC	NA	False	NA	NA	False	ACTAAA	-17	NA	22230497	22201854	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
ENSMUSG00000013150.16_106442742_106485239_1	chr8	-	2039	3	FSM	ENSMUSG00000013150.16	ENSMUST00000013294.16	4352	3	57	2256	-11	1307	multi-exon	FALSE	canonical	3	21	junction_1	4	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCATGGTGTGTGGTCGTT	NA	False	NA	NA	False	AGTAAA	-20	NA	106485239	106442741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_106444283_106454619_106454964_106485085
ENSMUSG00000013155.11_106430283_106434716_1	chr8	-	1307	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_7	49.3529562003563	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGTTCCATAGGAGC	NA	False	NA	-14	True	ATTAAA	-15	NA	106434716	106430282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434675
ENSMUSG00000013155.11_106430283_106434842_1	chr8	-	1553	7	FSM	ENSMUSG00000013155.11	ENSMUST00000013299.11	1275	7	-277	-1	0	0	multi-exon	FALSE	canonical	3	158	junction_2	11.5854314646552	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGTTCCATAGGAGC	NA	False	NA	-14	True	ATTAAA	-15	NA	106434842	106430282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455
ENSMUSG00000013158.7_106430283_106434716_1	chr8	+	1507	6	NIC	ENSMUSG00000013158.7	novel	575	3	NA	NA	-4004	-1526	intron_retention	FALSE	non_canonical	0	0	junction_1	0	139	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCGCGACTAGCCCACTG	NA	False	NA	NA	False	NA	NA	NA	106430282	106434716	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180
ENSMUSG00000013158.7_106430283_106434842_1	chr8	+	1306	8	NNC	ENSMUSG00000013158.7	novel	575	3	NA	NA	-4004	-1400	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	350	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAAATGGCTTCCTGAGG	NA	False	NA	NA	False	NA	NA	NA	106430282	106434842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434802
ENSMUSG00000013158.7_106430283_106434842_2	chr8	+	1320	8	NNC	ENSMUSG00000013158.7	novel	575	3	NA	NA	-4004	-1400	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	357	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAAATGGCTTCCTGAGG	NA	False	NA	NA	False	NA	NA	NA	106430282	106434842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434788
ENSMUSG00000013160.8_106251097_106292694_1	chr8	-	1638	8	NNC	ENSMUSG00000013160.8	novel	1629	8	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	213.058581577165	1146	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCTGTCTGTCTGCTCC	NA	False	NA	-10	True	AATAAA	-18	NA	106292694	106251096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_106251697_106251788_106251867_106251954_106252132_106252255_106252334_106255805_106255886_106257446_106257620_106265952_106266125_106292414
ENSMUSG00000013415.10_95853547_95873440_1	chr11	-	2472	15	NIC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-3	715	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	223.647955866503	1585	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAAAAAGCATGCCTT	NA	False	NA	15	True	NA	NA	NA	95873440	95853546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95871874_95871957_95873327
ENSMUSG00000013418.9_95781391_95805717_1	chr11	-	834	3	ISM	ENSMUSG00000013418.9	ENSMUST00000038343.7	1722	11	0	24622	0	-24622	5prime_fragment	FALSE	canonical	3	31	junction_1	3	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTCAGTAAAACTGACAG	2890	False	NA	NA	False	NA	NA	NA	95805717	95781390	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_95781937_95782583_95782800_95805645
ENSMUSG00000013465.20_25089724_25101393_1	chr2	-	2529	13	FSM	ENSMUSG00000013465.20	ENSMUST00000059849.15	2637	13	108	0	0	0	multi-exon	TRUE	canonical	3	539	junction_7	54.5501807716732	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGAGGAATCTGTTTGTC	NA	False	NA	NA	False	AATAAA	-20	NA	25101393	25089723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720_25100885_25101113
ENSMUSG00000013465.20_25089724_25101393_2	chr2	-	2522	13	NNC	ENSMUSG00000013465.20	novel	2637	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	174.991011673933	599	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGAGGAATCTGTTTGTC	NA	False	NA	NA	False	AATAAA	-20	NA	25101393	25089723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100543_25100720_25100885_25101113
ENSMUSG00000013495.16_108777698_108791528_1	chr5	+	1256	8	FSM	ENSMUSG00000013495.16	ENSMUST00000146207.6	1686	8	62	368	0	-368	multi-exon	FALSE	canonical	3	99	junction_1	14.7149791792207	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGGGGTTTTAAGCAGACT	NA	False	NA	NA	False	AATAAA	-25	NA	108777697	108791528	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904
ENSMUSG00000013495.16_108777698_108792982_1	chr5	+	1579	10	ISM	ENSMUSG00000013495.16	ENSMUST00000120327.3	1811	11	-177	1555	0	0	5prime_fragment	FALSE	canonical	3	25	junction_1	34.906223577529	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACACTTTTCCTGATAC	NA	False	NA	28	True	ATTAAA	-36	NA	108777697	108792982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_108777910_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422
ENSMUSG00000013495.16_108777698_108794537_1	chr5	+	1845	11	FSM	ENSMUSG00000013495.16	ENSMUST00000063272.13	3956	11	0	2111	0	0	multi-exon	FALSE	canonical	3	71	junction_10	21.559220765139	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGCAGTGAAGGGTTTCA	NA	False	NA	21	True	NA	NA	NA	108777697	108794537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704
ENSMUSG00000013539.15_18118689_18165947_1	chr16	-	1689	9	NIC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_8	76.5371641753207	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGGCTTTTTCTAA	NA	False	NA	-4	True	AATAAA	-16	NA	18165947	18118688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18165734
ENSMUSG00000013622.16_31205656_31211967_1	chr5	+	1289	7	FSM	ENSMUSG00000013622.16	ENSMUST00000013766.13	966	7	-323	0	0	0	multi-exon	FALSE	canonical	3	250	junction_6	22.1108319357027	1904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGTACCTGTGCGTG	585	False	NA	12	True	AATAAA	-25	NA	31205655	31211967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31206101_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
ENSMUSG00000013622.16_31206376_31211967_1	chr5	+	877	7	FSM	ENSMUSG00000013622.16	ENSMUST00000201136.2	894	7	247	-230	247	0	multi-exon	FALSE	canonical	3	6	junction_1	108.191830663051	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGTACCTGTGCGTG	1305	False	NA	12	True	AATAAA	-25	NA	31206375	31211967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31206409_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
ENSMUSG00000013629.17_31234467_31235823_1	chr5	+	836	5	ISM	ENSMUSG00000013629.17	ENSMUST00000013773.12	7137	44	22343	0	1310	0	3prime_fragment	FALSE	canonical	3	874	junction_1	101.327131115018	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTCGTCATGAGTACT	NA	False	NA	18	True	AATAAA	-14	NA	31234466	31235823	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_31234563_31234694_31234851_31234938_31235041_31235232_31235328_31235436
ENSMUSG00000013662.7_32649963_32689720_1	chr19	-	2835	10	FSM	ENSMUSG00000013662.7	ENSMUST00000235412.2	3771	10	11	925	0	259	multi-exon	FALSE	canonical	3	346	junction_2	45.0335951413833	664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAATTACAGCACTGAATT	NA	False	NA	NA	False	ATTAAA	-15	NA	32689720	32649962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32689665
ENSMUSG00000013662.7_32650222_32689720_1	chr19	-	2576	10	FSM	ENSMUSG00000013662.7	ENSMUST00000235412.2	3771	10	11	1184	0	0	multi-exon	FALSE	canonical	3	346	junction_2	45.0335951413833	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTTTCCCCACTTAGT	NA	False	NA	-18	True	AATAAA	-17	NA	32689720	32650221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32689665
ENSMUSG00000013662.7_32650670_32689720_1	chr19	-	2128	10	FSM	ENSMUSG00000013662.7	ENSMUST00000235412.2	3771	10	11	1632	0	-448	multi-exon	FALSE	canonical	3	346	junction_2	45.0335951413833	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTGTTGTATCTGTAG	NA	False	NA	NA	False	TATAAA	-26	NA	32689720	32650669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32689665
ENSMUSG00000013663.8_32792933_32797476_1	chr19	+	510	3	ISM	ENSMUSG00000013663.8	ENSMUST00000013807.8	8292	9	58036	6084	4308	2099	3prime_fragment	FALSE	canonical	3	145	junction_1	4	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGAATAAACTGAAATGGA	726	False	NA	NA	False	GATAAA	-21	NA	32792932	32797476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_32792984_32795235_32795461_32797242
ENSMUSG00000013701.14_31902119_31923828_2	chr14	-	1139	7	NNC	ENSMUSG00000013701.14	novel	1173	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1609.06965010496	26180	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTATCTCCATTTAATA	NA	False	NA	NA	False	AATAAA	-40	NA	31923828	31902118	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31915810_31915905_31920925_31920985_31923606
ENSMUSG00000013701.14_31902119_31923828_3	chr14	-	1087	6	NIC	ENSMUSG00000013701.14	novel	1173	7	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_5	1674.27851924344	5210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTATCTCCATTTAATA	NA	False	NA	NA	False	AATAAA	-40	NA	31923828	31902118	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31915810_31915905_31923599
ENSMUSG00000013701.14_31902119_31923828_4	chr14	-	1133	7	NNC	ENSMUSG00000013701.14	novel	1173	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	1	28	junction_2	1584.82562132242	25792	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTATCTCCATTTAATA	NA	False	NA	NA	False	AATAAA	-40	NA	31923828	31902118	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_31902628_31911100_31911199_31913298_31913358_31915359_31915445_31915810_31915905_31920925_31920985_31923599
ENSMUSG00000013736.17_106746102_106759435_1	chr6	+	2243	9	FSM	ENSMUSG00000013736.17	ENSMUST00000113248.4	1398	9	-25	-820	0	0	multi-exon	FALSE	canonical	3	228	junction_1	232.818296907696	809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGTCGTTATTTCTGT	NA	False	NA	12	True	AATAAA	-21	NA	106746101	106759435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_106746153_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
ENSMUSG00000013766.12_35293189_35297780_1	chr17	+	1061	4	NNC	ENSMUSG00000013766.12	novel	1142	3	NA	NA	-2689	0	at_least_one_novel_splicesite	FALSE	canonical	2	21	junction_1	205.819230286083	890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGAGAGCTGTCTGTG	NA	False	NA	20	True	NA	NA	NA	35293188	35297780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35293306_35296110_35296183_35296812_35296939_35297034
ENSMUSG00000013766.12_35295878_35297780_1	chr17	+	1033	4	FSM	ENSMUSG00000013766.12	ENSMUST00000172678.8	750	4	-29	-254	0	0	multi-exon	FALSE	canonical	3	186	junction_1	129.208702837266	1710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGAGAGCTGTCTGTG	NA	False	NA	20	True	NA	NA	NA	35295877	35297780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35295967_35296110_35296183_35296812_35296939_35297034
ENSMUSG00000013766.12_35295878_35297780_2	chr17	+	1002	4	NIC	ENSMUSG00000013766.12	novel	464	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	215.629826838084	1680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGAGAGCTGTCTGTG	NA	False	NA	20	True	NA	NA	NA	35295877	35297780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_35295936_35296110_35296183_35296812_35296939_35297034
ENSMUSG00000013787.16_35130225_35133027_1	chr17	+	984	5	ISM	ENSMUSG00000013787.16	ENSMUST00000013931.12	4026	27	12278	0	274	0	3prime_fragment	FALSE	canonical	3	414	junction_3	11.4972822875669	325	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGGTGATTGTTTCAG	1795	False	NA	19	True	AATAAA	-20	NA	35130224	35133027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
ENSMUSG00000013973.13_171157178_171169257_1	chr1	+	1622	6	NIC	ENSMUSG00000013973.13	novel	849	5	NA	NA	0	7	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	78.1756995491566	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAAGCTGTGGCCCTTTGC	1657	False	NA	25	True	TTTAAA	-5	NA	171157177	171169257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_171157261_171158820_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ENSMUSG00000013973.13_171169812_171173050_2	chr1	+	1549	7	NIC	ENSMUSG00000013973.13	novel	2563	6	NA	NA	4277	3151	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCGGGCAAGAATCTCTGT	9164	False	NA	NA	False	NA	NA	NA	171169811	171173050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171172758
ENSMUSG00000013973.13_171169812_171173213_1	chr1	+	1367	7	NIC	ENSMUSG00000013973.13	novel	2563	6	NA	NA	4277	3314	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAACCCCCCGGCCGGATG	9164	False	NA	NA	False	NA	NA	NA	171169811	171173213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173103
ENSMUSG00000013973.13_171169812_171173213_2	chr1	+	1902	6	NIC	ENSMUSG00000013973.13	novel	2563	6	NA	NA	4277	3314	intron_retention	FALSE	non_canonical	0	0	junction_1	0	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAACCCCCCGGCCGGATG	9164	False	NA	NA	False	NA	NA	NA	171169811	171173213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481
ENSMUSG00000013973.13_171169812_171173213_3	chr1	+	1712	7	NIC	ENSMUSG00000013973.13	novel	2563	6	NA	NA	4277	3314	intron_retention	FALSE	non_canonical	0	0	junction_1	0	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAACCCCCCGGCCGGATG	9164	False	NA	NA	False	NA	NA	NA	171169811	171173213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171172758
ENSMUSG00000013997.11_171157178_171169257_1	chr1	-	1589	5	NIC	ENSMUSG00000013997.11	novel	2932	5	NA	NA	2778	8398	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	167	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCCTTGGCGGCCCCGCC	4835	False	NA	NA	False	NA	NA	NA	171169257	171157177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_171157261_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ENSMUSG00000013997.11_171169812_171173213_1	chr1	-	1329	7	NNC	ENSMUSG00000013997.11	novel	1335	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	52.081399964116	567	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCTGGACATGTCTTT	879	False	NA	-10	True	AATATA	-8	NA	171173213	171169811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172102_171172481_171172569_171173135
ENSMUSG00000014074.18_32096279_32117662_1	chr16	+	1870	6	FSM	ENSMUSG00000014074.18	ENSMUST00000014218.15	3932	6	0	2062	0	-2062	multi-exon	FALSE	canonical	3	5	junction_5	6.9108610172684	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGGAAAATATTCATCGAA	NA	False	NA	NA	False	NA	NA	NA	32096278	32117662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32097234_32101128_32101206_32104187_32104368_32107936_32108059_32110720_32110800_32117205
ENSMUSG00000014075.16_32238613_32247716_1	chr16	+	544	5	FSM	ENSMUSG00000014075.16	ENSMUST00000014220.15	838	5	93	201	0	-197	multi-exon	FALSE	canonical	3	248	junction_3	20.9568008054665	1531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTAAGTTGTATATGTT	NA	False	NA	17	True	AATAAA	-28	NA	32238612	32247716	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32238746_32241637_32241772_32244058_32244129_32245675_32245740_32247573
ENSMUSG00000014075.16_32238613_32247716_2	chr16	+	632	6	NNC	ENSMUSG00000014075.16	novel	838	5	NA	NA	0	-197	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	122.726688214096	775	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTAAGTTGTATATGTT	NA	False	NA	17	True	AATAAA	-28	NA	32238612	32247716	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_32238746_32241637_32241772_32244058_32244129_32244971_32245060_32245675_32245740_32247573
ENSMUSG00000014075.16_32238613_32247917_1	chr16	+	833	6	NNC	ENSMUSG00000014075.16	novel	838	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	122.726688214096	2378	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGAATAGTTTTTATG	NA	False	NA	9	True	AATAAA	-21	NA	32238612	32247917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_32238746_32241637_32241772_32244058_32244129_32244971_32245060_32245675_32245740_32247573
ENSMUSG00000014177.11_62770385_62786012_1	chr11	+	1681	7	FSM	ENSMUSG00000014177.11	ENSMUST00000014321.5	1784	7	104	-1	-55	1	multi-exon	FALSE	canonical	3	376	junction_1	45.7666181111663	2731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGTGTGGTCCCATTT	9345	False	NA	11	True	TATAAA	-19	NA	62770384	62786012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_62770422_62772762_62772846_62774452_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
ENSMUSG00000014177.11_62770385_62786012_2	chr11	+	1733	7	NNC	ENSMUSG00000014177.11	novel	1784	7	NA	NA	-55	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	179.477637108979	2708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGTGTGGTCCCATTT	9345	False	NA	11	True	TATAAA	-19	NA	62770384	62786012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_62770422_62772762_62772846_62774400_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
ENSMUSG00000014195.17_100473655_100510446_1	chr11	-	1771	14	FSM	ENSMUSG00000014195.17	ENSMUST00000014339.15	2330	14	548	11	0	0	multi-exon	FALSE	canonical	3	2240	junction_1	249.671049855795	4550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGACCGTTCTTTGGTCC	5930	False	NA	-32	True	AATAAA	-4	NA	100510446	100473654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
ENSMUSG00000014195.17_100473655_100510446_2	chr11	-	1766	14	NNC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	24	junction_13	721.29422633676	1986	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGACCGTTCTTTGGTCC	5930	False	NA	-32	True	AATAAA	-4	NA	100510446	100473654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492638_100510353
ENSMUSG00000014195.17_100473655_100510446_3	chr11	-	1766	14	NNC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	731.82835799259	1349	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGACCGTTCTTTGGTCC	5930	False	NA	-32	True	AATAAA	-4	NA	100510446	100473654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480811_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
ENSMUSG00000014226.11_160030491_160040385_1	chr1	-	1484	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	60	554	-10	-554	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	37609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGTTCTGCAATCTGTT	7356	False	NA	-5	True	AATAAA	-20	NA	160040385	160030490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
ENSMUSG00000014226.11_160030733_160040385_1	chr1	-	1242	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	60	796	-10	-796	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	16880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAAATTTGTGCAAAGTTA	7356	False	NA	-24	True	AATAAA	-20	NA	160040385	160030732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
ENSMUSG00000014226.11_160030936_160040385_1	chr1	-	1039	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	60	999	-10	-999	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	2750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTCATTAGCACCCCAGA	7356	False	NA	-17	True	AATAAA	-19	NA	160040385	160030935	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
ENSMUSG00000014232.15_3726903_3759011_1	chr16	+	1559	12	NNC	ENSMUSG00000014232.15	novel	1779	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	44.7189570983821	1112	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGCTGCTATTATTAT	3308	False	NA	7	True	AATACA	-17	NA	3726902	3759011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_3727018_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741709_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755422_3755479_3758631
ENSMUSG00000014243.6_62158050_62172201_2	chr11	-	607	3	NIC	ENSMUSG00000014243.6	novel	732	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	97	junction_2	132	1095	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATCAAGTTATTGAAGT	NA	False	NA	-15	True	AATAAA	-25	NA	62172201	62158049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_62158433_62159529_62159635_62172082
ENSMUSG00000014243.6_62158050_62172238_1	chr11	-	747	4	NIC	ENSMUSG00000014243.6	novel	732	5	NA	NA	-37	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	149.035417118065	2984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATCAAGTTATTGAAGT	NA	False	NA	-15	True	AATAAA	-25	NA	62172238	62158049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_62158433_62159529_62159635_62164537_62164641_62172082
ENSMUSG00000014245.9_62402517_62404730_1	chr11	+	1582	2	ISM	ENSMUSG00000014245.9	ENSMUST00000014389.6	2174	7	53231	513	53083	-513	3prime_fragment	FALSE	canonical	3	316	junction_1	0	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTGGGCCCACACCTTT	NA	False	NA	25	True	AATAAA	-29	NA	62402516	62404730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_62403098_62403729
ENSMUSG00000014245.9_62402517_62404730_2	chr11	+	1254	3	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53083	-513	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_1	112	309	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTGGGCCCACACCTTT	NA	False	NA	25	True	AATAAA	-29	NA	62402516	62404730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_62402636_62402963_62403098_62403729
ENSMUSG00000014294.5_36875514_36877610_1	chr18	-	438	3	NNC	ENSMUSG00000014294.5	novel	572	3	NA	NA	0	-129	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1533	37993	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTTCAGAATGTCCTCTT	NA	False	NA	-21	True	TATAAA	-18	NA	36877610	36875513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_36875712_36877233_36877341_36877477
ENSMUSG00000014294.5_36875514_36877610_2	chr18	-	443	3	FSM	ENSMUSG00000014294.5	ENSMUST00000014438.5	572	3	0	129	0	-129	multi-exon	FALSE	canonical	3	2929	junction_2	68.5	40812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTTCAGAATGTCCTCTT	NA	False	NA	-21	True	TATAAA	-18	NA	36877610	36875513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_36875712_36877233_36877341_36877472
ENSMUSG00000014294.5_36875514_36877610_3	chr18	-	435	3	NNC	ENSMUSG00000014294.5	novel	572	3	NA	NA	0	-129	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1464.5	35172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTTCAGAATGTCCTCTT	NA	False	NA	-21	True	TATAAA	-18	NA	36877610	36875513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_36875700_36877229_36877341_36877472
ENSMUSG00000014301.14_4434328_4442770_1	chr16	-	661	5	NNC	ENSMUSG00000014301.14	novel	596	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_4	540.407947757988	749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCCTGTTTGAGAAGGT	NA	False	NA	-15	True	AATAAA	-28	NA	4442770	4434327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_4434498_4434676_4434743_4434989_4435127_4435782_4436015_4442714
ENSMUSG00000014301.14_4434328_4442810_1	chr16	-	545	5	NNC	ENSMUSG00000014301.14	novel	596	5	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	525.041903089649	3881	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCCTGTTTGAGAAGGT	NA	False	NA	-15	True	AATAAA	-28	NA	4442810	4434327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_4434498_4434676_4434743_4434998_4435127_4435782_4435868_4442714
ENSMUSG00000014301.14_4434328_4442810_2	chr16	-	548	5	NNC	ENSMUSG00000014301.14	novel	596	5	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	544.721947419048	6759	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCCTGTTTGAGAAGGT	NA	False	NA	-15	True	AATAAA	-28	NA	4442810	4434327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_4434498_4434676_4434743_4434989_4435127_4435782_4435862_4442714
ENSMUSG00000014301.14_4434328_4442810_3	chr16	-	546	5	NNC	ENSMUSG00000014301.14	novel	596	5	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	540.041433595609	3132	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCCTGTTTGAGAAGGT	NA	False	NA	-15	True	AATAAA	-28	NA	4442810	4434327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_4434498_4434676_4434743_4434989_4435119_4435782_4435868_4442714
ENSMUSG00000014301.14_4434328_4442810_4	chr16	-	544	5	NNC	ENSMUSG00000014301.14	novel	596	5	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	544.721947419048	3189	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCCTGTTTGAGAAGGT	NA	False	NA	-15	True	AATAAA	-28	NA	4442810	4434327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_4434498_4434676_4434743_4434989_4435127_4435782_4435868_4442724
ENSMUSG00000014303.14_4434328_4442810_1	chr16	+	469	4	Genic_Genomic	ENSMUSG00000014303.14	novel	711	4	NA	NA	4836	22	multi-exon	FALSE	non_canonical	0	0	junction_1	0	739	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGAGCGCGTGCGCAAGGA	NA	False	NA	NA	False	NA	NA	NA	4434327	4442810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_4434498_4434676_4434743_4434989_4435127_4442714
ENSMUSG00000014303.14_4434328_4442810_2	chr16	+	554	5	Genic_Genomic	ENSMUSG00000014303.14	novel	711	4	NA	NA	4836	22	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11854	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGAGCGCGTGCGCAAGGA	NA	False	NA	NA	False	NA	NA	NA	4434327	4442810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_4434498_4434676_4434743_4434989_4435127_4435782_4435868_4442714
ENSMUSG00000014402.16_46539038_46569639_1	chr7	-	1371	8	NIC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	0	-263	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	409.120460280842	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCAGTTCAGTATTCTGT	NA	False	NA	50	True	AATAAA	-23	NA	46569639	46539037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_46539453_46540669_46540910_46542105_46542309_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
ENSMUSG00000014402.16_46539038_46569639_2	chr7	-	1453	10	NIC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	0	-263	combination_of_known_junctions	FALSE	canonical	3	163	junction_7	331.9070969227	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCAGTTCAGTATTCTGT	NA	False	NA	50	True	AATAAA	-23	NA	46569639	46539037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558740_46560492_46560559_46563125_46563211_46569568
ENSMUSG00000014402.16_46539122_46569685_1	chr7	-	1371	10	NNC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	0	212	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_2	371.517940679738	215	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTTCTTGGACTT	NA	False	NA	-34	True	AATAAA	-14	NA	46569685	46539121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_46539453_46540669_46540789_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
ENSMUSG00000014402.16_46539122_46569685_2	chr7	-	1333	8	NIC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	0	212	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	409.120460280842	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTTCTTGGACTT	NA	False	NA	-34	True	AATAAA	-14	NA	46569685	46539121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_46539453_46540669_46540910_46542105_46542309_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
ENSMUSG00000014402.16_46539122_46569685_3	chr7	-	1489	10	NNC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	0	212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	379.054672104756	3014	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTTCTTGGACTT	NA	False	NA	-34	True	AATAAA	-14	NA	46569685	46539121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_46539453_46540669_46540910_46542105_46542302_46550770_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
ENSMUSG00000014402.16_46539122_46569685_4	chr7	-	1415	10	NIC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	0	212	combination_of_known_junctions	FALSE	canonical	3	163	junction_7	331.9070969227	1737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTTCTTGGACTT	NA	False	NA	-34	True	AATAAA	-14	NA	46569685	46539121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558740_46560492_46560559_46563125_46563211_46569568
ENSMUSG00000014402.16_46539122_46569685_5	chr7	-	1387	10	NIC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	0	212	combination_of_known_junctions	FALSE	canonical	3	34	junction_7	371.218746865903	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTTCTTGGACTT	NA	False	NA	-34	True	AATAAA	-14	NA	46569685	46539121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558712_46560492_46560559_46563125_46563211_46569568
ENSMUSG00000014402.16_46539122_46569685_6	chr7	-	1484	10	NNC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	0	212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	379.054672104756	2945	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTTCTTGGACTT	NA	False	NA	-34	True	AATAAA	-14	NA	46569685	46539121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_46539453_46540669_46540910_46542105_46542297_46550770_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
ENSMUSG00000014402.16_46539208_46569639_1	chr7	-	1360	10	FSM	ENSMUSG00000014402.16	ENSMUST00000014546.15	1949	10	78	511	0	126	multi-exon	FALSE	canonical	3	992	junction_2	86.0289931030289	987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTTTTATTAATGCACT	NA	False	NA	-120	True	AATATA	-25	NA	46569639	46539207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
ENSMUSG00000014444.18_123202952_123208486_1	chr8	-	1604	15	NIC	ENSMUSG00000014444.18	novel	2860	3	NA	NA	929	5485	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	299	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGCGGAGTGGCGTGAGG	4298	False	NA	NA	False	NA	NA	NA	123208486	123202951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207871_123207964_123208069_123208137_123208209_123208269_123208334
ENSMUSG00000014444.18_123202952_123208486_2	chr8	-	1731	14	NIC	ENSMUSG00000014444.18	novel	2860	3	NA	NA	929	5485	intron_retention	FALSE	non_canonical	0	0	junction_1	0	609	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGCGGAGTGGCGTGAGG	4298	False	NA	NA	False	NA	NA	NA	123208486	123202951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207964_123208069_123208137_123208209_123208269_123208334
ENSMUSG00000014498.10_128237264_128245640_1	chr10	+	1021	7	Genic_Genomic	ENSMUSG00000014498.10	novel	670	6	NA	NA	12105	1067	multi-exon	FALSE	non_canonical	0	0	junction_1	0	977	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGCAGGGGGAGCCAGGG	4931	False	NA	NA	False	NA	NA	NA	128237263	128245640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_128237793_128244022_128244084_128244184_128244267_128244403_128244476_128244566_128244706_128245115_128245218_128245604
ENSMUSG00000014498.10_128237264_128245640_2	chr10	+	1256	7	Genic_Genomic	ENSMUSG00000014498.10	novel	670	6	NA	NA	12105	1067	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1266	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGCAGGGGGAGCCAGGG	4931	False	NA	NA	False	NA	NA	NA	128237263	128245640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115_128245218_128245375
ENSMUSG00000014504.17_34464198_34469261_1	chr18	+	485	5	FSM	ENSMUSG00000014504.17	ENSMUST00000072576.10	876	5	0	391	0	-137	multi-exon	FALSE	canonical	3	833	junction_3	511.998291012773	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGGAAAGGAAAGAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	34464197	34469261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_34464313_34464802_34464879_34467345_34467418_34467509_34467622_34469151
ENSMUSG00000014504.17_34464198_34469607_1	chr18	+	826	5	NNC	ENSMUSG00000014504.17	novel	876	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	398.683458397762	9262	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTTCATCTTTAAGT	NA	False	NA	-41	True	AATAAA	-13	NA	34464197	34469607	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_34464313_34464802_34464879_34467345_34467418_34467509_34467617_34469151
ENSMUSG00000014504.17_34464198_34469607_2	chr18	+	759	4	FSM	ENSMUSG00000014504.17	ENSMUST00000119329.8	613	4	-13	-133	0	1	multi-exon	FALSE	canonical	3	7	junction_2	851.206594585983	1939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTTCATCTTTAAGT	NA	False	NA	-41	True	AATAAA	-13	NA	34464197	34469607	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_34464313_34464802_34464879_34467509_34467622_34469151
ENSMUSG00000014551.9_92151819_92160975_1	chr6	-	855	5	NNC	ENSMUSG00000014551.9	novel	6073	4	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	407.310922392219	905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATAGTAAGTGTGGCCT	NA	False	NA	-9	True	AATAAA	-16	NA	92160975	92151818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_92152190_92152689_92152778_92155690_92155798_92158518_92158653_92160820
ENSMUSG00000014551.9_92151819_92161028_1	chr6	-	774	4	FSM	ENSMUSG00000014551.9	ENSMUST00000140438.2	6073	4	-14	5313	-14	0	multi-exon	FALSE	canonical	3	811	junction_2	13.9124245031395	8533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATAGTAAGTGTGGCCT	NA	False	NA	-9	True	AATAAA	-16	NA	92161028	92151818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_92152190_92152689_92152778_92155690_92155798_92160820
ENSMUSG00000014551.9_92151819_92161028_2	chr6	-	767	4	NNC	ENSMUSG00000014551.9	novel	6073	4	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	394.848775552813	7759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATAGTAAGTGTGGCCT	NA	False	NA	-9	True	AATAAA	-16	NA	92161028	92151818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_92152190_92152689_92152767_92155686_92155798_92160820
ENSMUSG00000014554.14_83457199_83483889_1	chr6	-	1027	7	NNC	ENSMUSG00000014554.14	novel	1107	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_4	64.8787330332521	1395	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483889	83457198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467420_83467591_83473667_83473781_83483729
ENSMUSG00000014554.14_83457199_83483889_2	chr6	-	929	6	NIC	ENSMUSG00000014554.14	novel	1107	7	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	1	2	junction_2	87.4505574596297	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483889	83457198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_83457419_83457824_83457925_83463965_83464114_83467402_83467591_83473667_83473781_83483729
ENSMUSG00000014554.14_83457199_83483889_3	chr6	-	932	6	NIC	ENSMUSG00000014554.14	novel	1107	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_5	77.3356321497406	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483889	83457198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402_83467591_83483729
ENSMUSG00000014592.22_151876687_151946195_1	chr4	-	576	4	FSM	ENSMUSG00000014592.22	ENSMUST00000185034.8	2198	4	-34	1656	0	0	multi-exon	FALSE	canonical	3	969	junction_2	33.2565782966318	1976	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTTCATCTTTTTAAAA	NA	False	NA	-23	True	AATAAA	-10	NA	151946195	151876686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_151876960_151914874_151914994_151920270_151920341_151946081
ENSMUSG00000014606.15_70535022_70537810_1	chr11	-	1717	7	NIC	ENSMUSG00000014606.15	novel	1711	8	NA	NA	-6	0	intron_retention	FALSE	canonical	3	687	junction_4	57.3255808712151	3417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGTAAAGTCGTAACT	NA	False	NA	0	True	ATTAAA	-28	NA	70537810	70535021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_70535748_70535864_70535917_70535995_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70537593
ENSMUSG00000014606.15_70538113_70542247_2	chr11	-	1781	9	NIC	ENSMUSG00000014606.15	novel	770	6	NA	NA	-3942	-1372	intron_retention	FALSE	non_canonical	0	0	junction_1	0	972	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAAGTATCGCGAGAGT	NA	False	NA	NA	False	NA	NA	NA	70542247	70538112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_70538779_70538854_70538936_70540046_70540121_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
ENSMUSG00000014606.15_70538113_70542247_3	chr11	-	1847	9	NIC	ENSMUSG00000014606.15	novel	770	6	NA	NA	-3942	-1372	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAAGTATCGCGAGAGT	NA	False	NA	NA	False	NA	NA	NA	70542247	70538112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_70538779_70538840_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
ENSMUSG00000014633.16_117616018_117648178_1	chr8	-	849	4	FSM	ENSMUSG00000014633.16	ENSMUST00000148235.8	1459	4	16	594	0	0	multi-exon	FALSE	canonical	3	303	junction_2	17.3076733143296	4370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TGAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	117648178	117616017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_117616599_117620826_117620899_117637866_117637974_117648089
ENSMUSG00000014633.16_117616257_117648178_1	chr8	-	449	4	NNC	ENSMUSG00000014633.16	novel	793	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	149.010812433938	221	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCTCCCTTTCTTTAAC	NA	False	NA	-5	True	AATAAA	-15	NA	117648178	117616256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_117616438_117620826_117620899_117637866_117637974_117648089
ENSMUSG00000014633.16_117616257_117648178_2	chr8	-	610	4	FSM	ENSMUSG00000014633.16	ENSMUST00000148235.8	1459	4	16	833	0	0	multi-exon	FALSE	canonical	3	303	junction_2	17.3076733143296	3763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCTCCCTTTCTTTAAC	NA	False	NA	-5	True	AATAAA	-15	NA	117648178	117616256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_117616599_117620826_117620899_117637866_117637974_117648089
ENSMUSG00000014633.16_117616257_117648178_3	chr8	-	654	4	FSM	ENSMUSG00000014633.16	ENSMUST00000131616.8	876	4	-17	239	0	0	multi-exon	FALSE	canonical	2	3	junction_2	157.584545209512	1104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCTCCCTTTCTTTAAC	NA	False	NA	-5	True	AATAAA	-15	NA	117648178	117616256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_117616599_117620826_117620899_117637822_117637974_117648089
ENSMUSG00000014686.9_19586023_19591984_1	chr7	-	1063	4	ISM	ENSMUSG00000014686.9	ENSMUST00000014830.8	1635	6	3240	1	-1823	0	3prime_fragment	FALSE	canonical	0	0	junction_3	1.69967317119759	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGGGTGTCAGCCTCTCC	835	False	NA	NA	False	CATAAA	-16	NA	19591984	19586022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_19586239_19587496_19587824_19589998_19590278_19591743
ENSMUSG00000014748.14_83747398_83752772_1	chr6	-	1430	6	FSM	ENSMUSG00000014748.14	ENSMUST00000014892.8	2984	6	23	1531	0	0	multi-exon	FALSE	canonical	3	526	junction_1	47.9474712576169	2394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9735	False	NA	NA	False	AAAAAG	-38	NA	83752772	83747397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83748286_83748428_83748532_83749223_83749292_83750691_83750846_83751999_83752080_83752635
ENSMUSG00000014748.14_83747731_83752772_1	chr6	-	994	5	NIC	ENSMUSG00000014748.14	novel	2984	6	NA	NA	0	-333	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	255.470521782847	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAGGAGTTCATCTTCTT	9735	False	NA	-12	True	AATAAA	-30	NA	83752772	83747730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_83748286_83749223_83749292_83750691_83750846_83751999_83752080_83752635
ENSMUSG00000014748.14_83747731_83752772_2	chr6	-	1097	6	FSM	ENSMUSG00000014748.14	ENSMUST00000014892.8	2984	6	23	1864	0	-333	multi-exon	FALSE	canonical	3	526	junction_1	47.9474712576169	1587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAGGAGTTCATCTTCTT	9735	False	NA	-12	True	AATAAA	-30	NA	83752772	83747730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83748286_83748428_83748532_83749223_83749292_83750691_83750846_83751999_83752080_83752635
ENSMUSG00000014763.9_15616510_15624296_1	chr17	+	2603	2	ISM	ENSMUSG00000014763.9	ENSMUST00000055352.8	4420	11	46	29404	0	-4819	5prime_fragment	FALSE	canonical	3	53	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGAAGTAATTTTGCTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	15616509	15624296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_15616823_15622006
ENSMUSG00000014767.18_15720190_15737440_1	chr17	+	1553	8	FSM	ENSMUSG00000014767.18	ENSMUST00000162505.8	12794	8	40	11201	0	243	multi-exon	FALSE	canonical	3	150	junction_1	66.6565978791022	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTTTTTCTAGTTTGT	NA	False	NA	13	True	AGTAAA	-15	NA	15720189	15737440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_15720287_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
ENSMUSG00000014767.18_15720190_15737689_1	chr17	+	1802	8	FSM	ENSMUSG00000014767.18	ENSMUST00000162505.8	12794	8	40	10952	0	0	multi-exon	FALSE	canonical	3	150	junction_1	66.6565978791022	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	23	True	AAGAAA	-31	NA	15720189	15737689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_15720287_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
ENSMUSG00000014767.18_15741837_15742212_1	chr17	+	254	2	NIC	ENSMUSG00000014767.18	novel	12794	8	NA	NA	6092	4523	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTGGAATATCTTTTTCT	6054	False	NA	NA	False	NA	NA	NA	15741836	15742212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_15742056_15742177
ENSMUSG00000014767.18_15741837_15747552_1	chr17	+	1021	7	NNC	ENSMUSG00000014767.18	novel	12794	8	NA	NA	6092	-1089	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACCAGGCCGGAAGAGGG	6054	False	NA	NA	False	NA	NA	NA	15741836	15747552	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_15742056_15742177_15742292_15743064_15743169_15745530_15745663_15746634_15746875_15747252_15747366_15747453
ENSMUSG00000014769.11_15695981_15718560_1	chr17	-	1060	6	FSM	ENSMUSG00000014769.11	ENSMUST00000014913.11	1758	6	0	698	0	0	multi-exon	FALSE	canonical	3	4315	junction_4	304.330741135364	34486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTCTTTTTCTTTATCTG	NA	False	NA	-21	True	NA	NA	NA	15718560	15695980	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
ENSMUSG00000014769.11_15695981_15718560_2	chr17	-	1055	6	NNC	ENSMUSG00000014769.11	novel	1758	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1969.29053214603	30562	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTCTTTTTCTTTATCTG	NA	False	NA	-21	True	NA	NA	NA	15718560	15695980	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_15696468_15697576_15697679_15710417_15710548_15713359_15713442_15714677_15714786_15718414
ENSMUSG00000014769.11_15696221_15718560_2	chr17	-	815	6	NNC	ENSMUSG00000014769.11	novel	1758	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2027.92287821801	5054	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTTCTTACACTGTGT	NA	False	NA	-13	True	ATTAAA	-15	NA	15718560	15696220	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713437_15714677_15714786_15718414
ENSMUSG00000014769.11_15696221_15718560_3	chr17	-	815	6	NNC	ENSMUSG00000014769.11	novel	1758	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1969.29053214603	28122	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTTCTTACACTGTGT	NA	False	NA	-13	True	ATTAAA	-15	NA	15718560	15696220	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_15696468_15697576_15697679_15710417_15710548_15713359_15713442_15714677_15714786_15718414
ENSMUSG00000014769.11_15696221_15718560_4	chr17	-	814	6	NNC	ENSMUSG00000014769.11	novel	1758	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2027.92287821801	4272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTTCTTACACTGTGT	NA	False	NA	-13	True	ATTAAA	-15	NA	15718560	15696220	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713432_15714673_15714786_15718414
ENSMUSG00000014771.14_15741837_15747552_1	chr17	-	1020	7	NNC	ENSMUSG00000014771.14	novel	1120	6	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	325.810101473577	458	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTCAGTACCTCATAATT	NA	False	NA	-14	True	NA	NA	NA	15747552	15741836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_15742056_15742177_15742292_15743064_15743169_15745530_15745663_15746634_15746875_15747252_15747370_15747458
ENSMUSG00000014771.14_15741837_15747552_2	chr17	-	1024	7	NNC	ENSMUSG00000014771.14	novel	1120	6	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	325.810101473577	485	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTCAGTACCTCATAATT	NA	False	NA	-14	True	NA	NA	NA	15747552	15741836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_15742056_15742177_15742292_15743064_15743169_15745530_15745663_15746634_15746875_15747252_15747364_15747448
ENSMUSG00000014776.8_106003091_106006678_1	chr8	+	964	4	FSM	ENSMUSG00000014776.8	ENSMUST00000014920.8	3176	4	319	1893	319	-1893	multi-exon	FALSE	canonical	2	9	junction_3	2.05480466765633	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGCTCTTTGCTCAAGA	NA	False	NA	18	True	AATAAA	-36	NA	106003090	106006678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106003246_106005605_106005903_106006047_106006408_106006526
ENSMUSG00000014856.13_106053020_106055689_1	chr8	+	769	6	NNC	ENSMUSG00000014856.13	novel	785	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	11	junction_4	158.439893966135	4038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCGTGTGGGTGATGATG	1	True	NA	18	True	AATAAA	-20	NA	106053019	106055689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055091_106055221_106055325_106055403
ENSMUSG00000014856.13_106053020_106055689_2	chr8	+	979	4	ISM	ENSMUSG00000014856.13	ENSMUST00000126705.9	895	5	0	-5	0	0	intron_retention	FALSE	canonical	3	392	junction_2	12.9614813968157	893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCGTGTGGGTGATGATG	1	True	NA	18	True	AATAAA	-20	NA	106053019	106055689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953
ENSMUSG00000014856.13_106053020_106055689_3	chr8	+	744	6	NNC	ENSMUSG00000014856.13	novel	785	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	155.915874753022	3654	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCGTGTGGGTGATGATG	1	True	NA	18	True	AATAAA	-20	NA	106053019	106055689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_106053107_106053689_106053779_106054801_106054862_106054953_106055091_106055239_106055325_106055403
ENSMUSG00000014867.10_26806393_26810184_1	chr2	-	1172	6	Fusion	ENSMUSG00000015790.17_ENSMUSG00000014867.10	novel	3281	6	NA	NA	-3642	-924	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1681	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCGTCCCGGAAGGAAGC	NA	False	NA	NA	False	NA	NA	NA	26810184	26806392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_-_26806516_26806716_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809744
ENSMUSG00000014867.10_26806393_26810184_2	chr2	-	1186	6	Fusion	ENSMUSG00000015790.17_ENSMUSG00000014867.10	novel	3281	6	NA	NA	-3642	-924	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1729	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCGTCCCGGAAGGAAGC	NA	False	NA	NA	False	NA	NA	NA	26810184	26806392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_-_26806516_26806716_26806872_26807439_26807544_26808876_26809068_26809203_26809371_26809738
ENSMUSG00000014867.10_26806393_26810184_3	chr2	-	1209	6	Fusion	ENSMUSG00000015790.17_ENSMUSG00000014867.10	novel	3281	6	NA	NA	-3642	-924	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1622	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCGTCCCGGAAGGAAGC	NA	False	NA	NA	False	NA	NA	NA	26810184	26806392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_-_26806516_26806716_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809707
ENSMUSG00000014867.10_26810052_26823463_1	chr2	-	2804	6	FSM	ENSMUSG00000014867.10	ENSMUST00000015011.10	3281	6	477	0	-68	0	multi-exon	TRUE	canonical	3	778	junction_1	38.262252939418	1890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGTGGTCCTATATGG	NA	False	NA	-2	True	AATAAA	-18	NA	26823463	26810051	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
ENSMUSG00000014867.10_26810838_26823463_1	chr2	-	2018	6	FSM	ENSMUSG00000014867.10	ENSMUST00000015011.10	3281	6	477	786	-68	-786	multi-exon	FALSE	canonical	3	778	junction_1	38.262252939418	835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCGTGTTTCTCTTTTTGG	NA	False	NA	-1	True	TTTAAA	-20	NA	26823463	26810837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
ENSMUSG00000014867.10_26811738_26823463_1	chr2	-	1118	6	FSM	ENSMUSG00000014867.10	ENSMUST00000015011.10	3281	6	477	1686	-68	236	multi-exon	FALSE	canonical	3	778	junction_1	38.262252939418	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCTTGACTGTCC	NA	False	NA	-3	True	GATAAA	-14	NA	26823463	26811737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
ENSMUSG00000014873.16_26806393_26810184_1	chr2	+	1302	6	NIC	ENSMUSG00000014873.16	novel	1203	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_5	113.91821627817	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGCCAAACCAATATGT	NA	False	NA	26	True	CATAAA	-21	NA	26806392	26810184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_26806516_26806716_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809614
ENSMUSG00000014873.16_26806393_26810184_2	chr2	+	1379	5	FSM	ENSMUSG00000014873.16	ENSMUST00000125408.8	740	5	-288	-351	0	0	multi-exon	FALSE	canonical	3	245	junction_4	33.8996681399686	630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGCCAAACCAATATGT	NA	False	NA	26	True	CATAAA	-21	NA	26806392	26810184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809738
ENSMUSG00000014873.16_26806393_26810184_3	chr2	+	1122	6	NIC	ENSMUSG00000014873.16	novel	2519	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_3	115.994827470883	498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGCCAAACCAATATGT	NA	False	NA	26	True	CATAAA	-21	NA	26806392	26810184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_26806516_26806716_26806872_26807439_26807544_26808940_26809068_26809203_26809371_26809738
ENSMUSG00000014873.16_26806393_26810184_4	chr2	+	1323	5	NIC	ENSMUSG00000014873.16	novel	2519	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	21	junction_2	122.334326744377	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGCCAAACCAATATGT	NA	False	NA	26	True	CATAAA	-21	NA	26806392	26810184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_26806872_26807439_26807544_26808940_26809068_26809203_26809371_26809738
ENSMUSG00000014905.5_44252342_44256854_1	chr12	-	2206	3	FSM	ENSMUSG00000014905.5	ENSMUST00000015049.5	2461	3	255	0	-3	0	multi-exon	FALSE	canonical	3	92	junction_1	7	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGACGTGCTTGGAATGAT	NA	False	NA	NA	False	AATAAA	-16	NA	44256854	44252341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_44254189_44254869_44255097_44256722
ENSMUSG00000014905.5_44252678_44256854_1	chr12	-	1870	3	FSM	ENSMUSG00000014905.5	ENSMUST00000015049.5	2461	3	255	336	-3	-336	multi-exon	FALSE	canonical	3	92	junction_1	7	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCAGTGTTGTCATTTTA	NA	False	NA	NA	False	TATAAA	-15	NA	44256854	44252677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_44254189_44254869_44255097_44256722
ENSMUSG00000014905.5_44253550_44256854_1	chr12	-	998	3	FSM	ENSMUSG00000014905.5	ENSMUST00000015049.5	2461	3	255	1208	-3	-1208	multi-exon	FALSE	canonical	3	92	junction_1	7	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAACTGTAATTTTCCTGA	NA	False	NA	NA	False	ATTAAA	-17	NA	44256854	44253549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_44254189_44254869_44255097_44256722
ENSMUSG00000014932.16_32768515_32844401_1	chr5	+	4137	12	FSM	ENSMUSG00000014932.16	ENSMUST00000202543.4	2657	12	0	-1480	0	0	multi-exon	FALSE	canonical	3	599	junction_1	80.0238600782178	430	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTATTCTTTTCTGTT	NA	False	NA	8	True	AATAAA	-18	NA	32768514	32844401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_32768720_32797674_32797948_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
ENSMUSG00000014956.16_32616496_32648639_1	chr5	+	1425	8	FSM	ENSMUSG00000014956.16	ENSMUST00000015100.15	5962	8	309	4228	0	256	multi-exon	FALSE	canonical	3	1274	junction_2	51.5470856675363	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTAAAGTTCTATCTTC	3004	False	NA	NA	False	ATTAAA	-17	NA	32616495	32648639	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_32616752_32635409_32635542_32638033_32638265_32640703_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
ENSMUSG00000014956.16_32616674_32648639_1	chr5	+	1247	8	FSM	ENSMUSG00000014956.16	ENSMUST00000015100.15	5962	8	487	4228	108	256	multi-exon	FALSE	canonical	3	1274	junction_2	51.5470856675363	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTAAAGTTCTATCTTC	3182	False	NA	NA	False	ATTAAA	-17	NA	32616673	32648639	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_32616752_32635409_32635542_32638033_32638265_32640703_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
ENSMUSG00000014956.16_32616674_32650100_1	chr5	+	2708	8	FSM	ENSMUSG00000014956.16	ENSMUST00000015100.15	5962	8	487	2767	108	0	multi-exon	FALSE	canonical	3	1274	junction_2	51.5470856675363	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTGAGTGATTATTCTGT	3182	False	NA	23	True	AGTAAA	-20	NA	32616673	32650100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_32616752_32635409_32635542_32638033_32638265_32640703_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
ENSMUSG00000014959.13_70491920_70521786_1	chr2	+	1937	10	FSM	ENSMUSG00000014959.13	ENSMUST00000028509.11	2238	10	0	301	0	-279	multi-exon	FALSE	canonical	3	519	junction_9	56.2121203045731	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGTTGGTCTCTGTGA	NA	False	NA	15	True	ACTAAA	-20	NA	70491919	70521786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526_70519647_70521001
ENSMUSG00000014980.15_152246486_152262356_1	chr1	-	1049	5	NNC	ENSMUSG00000014980.15	novel	1133	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	184.305961650729	4308	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTCGTAATCATCCATCA	NA	False	NA	-5	True	AATAAA	-29	NA	152262356	152246485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_152247035_152247504_152247647_152259012_152259149_152259449_152259525_152262209
ENSMUSG00000014980.15_152246589_152262356_1	chr1	-	953	5	FSM	ENSMUSG00000014980.15	ENSMUST00000015124.15	1133	5	77	103	-13	0	multi-exon	FALSE	canonical	3	212	junction_4	96.4219243740758	1102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGGCAGGCAGCAAGTGG	NA	False	NA	-108	True	NA	NA	NA	152262356	152246588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_152247035_152247504_152247647_152259012_152259149_152259449_152259532_152262209
ENSMUSG00000015002.19_65720089_65725955_1	chr15	+	700	6	NIC	ENSMUSG00000015002.19	novel	5215	23	NA	NA	-2881	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_5	212.838906217825	4443	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGTCTTGGCTACATT	NA	False	NA	NA	False	NA	NA	NA	65720088	65725955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_65720159_65721611_65721727_65722972_65723025_65724809_65724983_65725379_65725456_65725741
ENSMUSG00000015013.10_123338380_123342328_1	chr8	+	593	5	FSM	ENSMUSG00000015013.10	ENSMUST00000015157.10	1659	5	-5	1071	0	-1071	multi-exon	FALSE	canonical	3	528	junction_1	75.9884859699152	4100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTACGTTGTCCTGTGTC	5517	False	NA	24	True	ACTAAA	-16	NA	123338379	123342328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_123338433_123339804_123339978_123340659_123340748_123341046_123341127_123342129
ENSMUSG00000015013.10_123338380_123342328_2	chr8	+	892	4	NIC	ENSMUSG00000015013.10	novel	1659	5	NA	NA	0	-1071	intron_retention	FALSE	canonical	3	528	junction_1	87.3473271231327	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTACGTTGTCCTGTGTC	5517	False	NA	24	True	ACTAAA	-16	NA	123338379	123342328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_123338433_123339804_123339978_123340659_123341127_123342129
ENSMUSG00000015053.15_88181605_88184014_1	chr6	+	1924	2	FSM	ENSMUSG00000015053.15	ENSMUST00000203579.2	841	2	178	-1261	178	0	multi-exon	FALSE	canonical	3	167	junction_1	0	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCGCCTGTTGAGTGG	NA	False	NA	14	True	AATAAA	-15	NA	88181604	88184014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_88181691_88182176
ENSMUSG00000015085.9_25290481_25291333_1	chr2	+	782	2	ISM	ENSMUSG00000015094.17	ENSMUST00000124277.2	738	5	1118	5019	0	-5019	internal_fragment	FALSE	canonical	2	7	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGTGTCCATAGGGTGG	524	False	NA	NA	False	AATAAA	-19	NA	25290480	25291333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_25290711_25290781
ENSMUSG00000015087.15_25473030_25474171_1	chr2	-	1028	2	ISM	ENSMUSG00000015087.15	ENSMUST00000058137.9	3230	15	24362	0	901	0	3prime_fragment	FALSE	canonical	3	314	junction_1	0	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGTGTGTGACTCTTTT	4182	False	NA	-6	True	CATAAA	-15	NA	25474171	25473029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_25474001_25474114
ENSMUSG00000015112.16_6041717_6217118_1	chr6	-	2568	18	FSM	ENSMUSG00000015112.16	ENSMUST00000015256.15	3067	18	0	499	0	-498	multi-exon	FALSE	canonical	3	190	junction_9	125.074538329783	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAATATCTAGCCTGGAC	20	False	6217138	NA	False	TATAAA	-30	NA	6217118	6041716	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
ENSMUSG00000015120.16_25480895_25492357_1	chr17	-	1051	7	NNC	ENSMUSG00000015120.16	novel	1286	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1806.32072333668	9804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGGTTTTTGTTGCATT	4747	False	NA	NA	False	AATAAA	-9	NA	25492357	25480894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_25481466_25483739_25483820_25484092_25484192_25487510_25487588_25488165_25488250_25488376_25488454_25492294
ENSMUSG00000015120.16_25480895_25492385_1	chr17	-	1077	7	NNC	ENSMUSG00000015120.16	novel	1286	8	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1821.27488925264	11636	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGGTTTTTGTTGCATT	4719	False	NA	NA	False	AATAAA	-9	NA	25492385	25480894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492303
ENSMUSG00000015120.16_25480895_25492385_2	chr17	-	1076	7	NNC	ENSMUSG00000015120.16	novel	1286	8	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	1766.93640236427	10467	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGGTTTTTGTTGCATT	4719	False	NA	NA	False	AATAAA	-9	NA	25492385	25480894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488240_25488376_25488454_25492294
ENSMUSG00000015120.16_25480895_25492583_1	chr17	-	1123	7	NIC	ENSMUSG00000015120.16	novel	1286	8	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	247	junction_6	1729.90957535037	2524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGGTTTTTGTTGCATT	4521	False	NA	NA	False	AATAAA	-9	NA	25492583	25480894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492455
ENSMUSG00000015120.16_25480895_25492841_1	chr17	-	1381	7	NIC	ENSMUSG00000015120.16	novel	1286	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	247	junction_6	1729.90957535037	2623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGGTTTTTGTTGCATT	4263	False	NA	NA	False	AATAAA	-9	NA	25492841	25480894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492455
ENSMUSG00000015120.16_25480895_25493276_1	chr17	-	1136	7	FSM	ENSMUSG00000015120.16	ENSMUST00000173713.8	890	7	8	-254	0	0	multi-exon	FALSE	canonical	3	206	junction_6	1745.07048568246	3523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGGTTTTTGTTGCATT	3828	False	NA	NA	False	AATAAA	-9	NA	25493276	25480894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493135
ENSMUSG00000015120.16_25481153_25492357_1	chr17	-	1028	8	FSM	ENSMUSG00000015120.16	ENSMUST00000173084.8	1286	8	0	258	0	0	multi-exon	FALSE	canonical	3	84	junction_7	2152.45295286232	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCTAGCAGCTAGTTT	4747	False	NA	NA	False	GATAAA	-15	NA	25492357	25481152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25491511_25491740_25492294
ENSMUSG00000015120.16_25481153_25492385_1	chr17	-	1056	8	FSM	ENSMUSG00000015120.16	ENSMUST00000173084.8	1286	8	-28	258	-28	0	multi-exon	FALSE	canonical	3	84	junction_7	2152.45295286232	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCTAGCAGCTAGTTT	4719	False	NA	NA	False	GATAAA	-15	NA	25492385	25481152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25491511_25491740_25492294
ENSMUSG00000015120.16_25481153_25492385_2	chr17	-	821	7	NNC	ENSMUSG00000015120.16	novel	1559	8	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1806.32072333668	3072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCTAGCAGCTAGTTT	4719	False	NA	NA	False	GATAAA	-15	NA	25492385	25481152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_25481466_25483739_25483820_25484092_25484192_25487510_25487588_25488165_25488250_25488376_25488454_25492294
ENSMUSG00000015120.16_25481153_25492583_1	chr17	-	865	7	NIC	ENSMUSG00000015120.16	novel	1559	8	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	247	junction_6	1729.90957535037	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCTAGCAGCTAGTTT	4521	False	NA	NA	False	GATAAA	-15	NA	25492583	25481152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492455
ENSMUSG00000015120.16_25481153_25493276_1	chr17	-	867	7	FSM	ENSMUSG00000015120.16	ENSMUST00000049911.16	1138	7	8	263	0	0	multi-exon	FALSE	canonical	3	77	junction_6	1792.78505404301	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCTAGCAGCTAGTTT	3828	False	NA	NA	False	GATAAA	-15	NA	25493276	25481152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493146
ENSMUSG00000015126.10_25459144_25461772_1	chr17	+	1671	4	NIC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	415	junction_1	23.4426012966897	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4603	False	NA	28	True	AATAAA	-18	NA	25459143	25461772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUSG00000015126.10_25459144_25461772_2	chr17	+	1173	6	NNC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	164.613000701646	816	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4603	False	NA	28	True	AATAAA	-18	NA	25459143	25461772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_25459320_25459417_25459638_25460037_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUSG00000015126.10_25459144_25461772_3	chr17	+	1183	6	NNC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	169.643154886957	1221	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4603	False	NA	28	True	AATAAA	-18	NA	25459143	25461772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_25459339_25459417_25459638_25460037_25460232_25460670_25460836_25461132_25461197_25461427
ENSMUSG00000015126.10_25459144_25461772_4	chr17	+	953	5	NNC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	191.317145075918	337	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4603	False	NA	28	True	AATAAA	-18	NA	25459143	25461772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_25459320_25460037_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUSG00000015126.10_25459144_25461772_5	chr17	+	1128	5	NIC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_4	166.386598017989	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4603	False	NA	28	True	AATAAA	-18	NA	25459143	25461772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_25459339_25459417_25459638_25460037_25460232_25460661_25460836_25461427
ENSMUSG00000015126.10_25459144_25461772_6	chr17	+	1182	6	NNC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	161.762047464787	1497	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4603	False	NA	28	True	AATAAA	-18	NA	25459143	25461772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_25459339_25459417_25459638_25460037_25460232_25460661_25460836_25461132_25461197_25461437
ENSMUSG00000015126.10_25459144_25461772_7	chr17	+	1018	5	NIC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	181.241551527237	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4603	False	NA	28	True	AATAAA	-18	NA	25459143	25461772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_25459339_25459417_25459638_25460037_25460232_25461132_25461197_25461427
ENSMUSG00000015134.16_66058259_66077265_1	chr7	-	1540	7	ISM	ENSMUSG00000015134.16	ENSMUST00000015278.15	3443	13	0	17621	0	0	5prime_fragment	FALSE	canonical	3	14	junction_3	2.80871659105879	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGACTCTGGCCTACAACC	NA	False	NA	NA	False	NA	NA	NA	66077265	66058258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_66059028_66061249_66061379_66062105_66062168_66062648_66062779_66068850_66068992_66071958_66072064_66077061
ENSMUSG00000015149.15_28466192_28488085_1	chr7	+	1765	16	NNC	ENSMUSG00000015149.15	novel	1843	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	27.6903513079115	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGACTTGTGTGGCCTCT	NA	False	NA	12	True	ATTAAA	-21	NA	28466191	28488085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_28466293_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341_28487682_28487712
ENSMUSG00000015165.17_28518254_28521674_1	chr7	+	976	6	ISM	ENSMUSG00000015165.17	ENSMUST00000174882.8	1850	13	5484	0	995	0	3prime_fragment	FALSE	canonical	3	4757	junction_1	533.031931501294	6314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGCTGGGGCTCCAAG	NA	False	NA	16	True	AATAAA	-19	NA	28518253	28521674	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
ENSMUSG00000015176.12_46064452_46068177_1	chr19	+	612	5	NNC	ENSMUSG00000015176.12	novel	1854	9	NA	NA	0	-207	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	404.493124169002	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTGCTCATTGTCCTTA	28	False	NA	NA	False	AATAAA	-36	NA	46064451	46068177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068032
ENSMUSG00000015217.12_70599524_70604282_1	chrX	+	1557	5	NNC	ENSMUSG00000015217.12	novel	1571	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	430.775100835691	3341	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599523	70604282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_70599615_70601662_70601814_70602038_70602179_70602703_70602869_70603272
ENSMUSG00000015217.12_70599596_70604282_1	chrX	+	1492	5	NNC	ENSMUSG00000015217.12	novel	1571	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	317.511023430683	2515	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599595	70604282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_70599615_70601658_70601807_70602038_70602179_70602703_70602879_70603272
ENSMUSG00000015247.11_53011950_53021723_1	chr4	+	1145	6	FSM	ENSMUSG00000015247.11	ENSMUST00000015391.10	1552	6	70	337	0	147	multi-exon	FALSE	canonical	3	527	junction_3	32.5785205311721	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCATGTTCATTTTTCCTG	2	True	NA	16	True	AATAAA	-18	NA	53011949	53021723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_53012048_53015014_53015226_53017048_53017208_53020181_53020332_53021110_53021198_53021283
ENSMUSG00000015247.11_53011950_53021916_1	chr4	+	1338	6	FSM	ENSMUSG00000015247.11	ENSMUST00000015391.10	1552	6	70	144	0	-144	multi-exon	FALSE	canonical	3	527	junction_3	32.5785205311721	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTCTTAGTGTGTTTGT	2	True	NA	NA	False	AATATA	-22	NA	53011949	53021916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_53012048_53015014_53015226_53017048_53017208_53020181_53020332_53021110_53021198_53021283
ENSMUSG00000015289.5_73395767_73397224_1	chrX	-	720	3	NNC	ENSMUSG00000015289.5	novel	761	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	696.5	14509	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGCCTCTAAATTTTC	4493	False	NA	-18	True	AATAAA	-30	NA	73397224	73395766	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_73396105_73396520_73396609_73396930
ENSMUSG00000015290.16_73409324_73412164_1	chrX	-	2327	4	FSM	ENSMUSG00000015290.16	ENSMUST00000155676.8	2442	4	115	0	0	0	multi-exon	FALSE	canonical	3	1598	junction_1	83.5636816379513	12398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTGAATCCTGTGTAATA	NA	False	NA	-6	True	AATAAA	-20	NA	73412164	73409323	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_73411193_73411306_73411516_73411758_73411865_73412021
ENSMUSG00000015290.16_73411071_73412164_1	chrX	-	580	4	FSM	ENSMUSG00000015290.16	ENSMUST00000155676.8	2442	4	115	1747	0	0	multi-exon	FALSE	canonical	3	1598	junction_1	83.5636816379513	4379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGGGAGAAATCCCAGGT	NA	False	NA	-65	True	AAAAAG	-26	NA	73412164	73411070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_73411193_73411306_73411516_73411758_73411865_73412021
ENSMUSG00000015291.11_73348862_73355468_1	chrX	+	567	2	NNC	ENSMUSG00000015291.11	novel	462	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	140	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	6206	False	NA	15	True	AATAAA	-16	NA	73348861	73355468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_73349018_73355057
ENSMUSG00000015291.11_73348862_73355468_2	chrX	+	2408	11	FSM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	258	0	0	0	multi-exon	FALSE	canonical	3	553	junction_5	84.5884152824723	907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	6206	False	NA	15	True	AATAAA	-16	NA	73348861	73355468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
ENSMUSG00000015312.10_80765907_80767593_1	chr10	+	833	4	NNC	ENSMUSG00000015312.10	novel	1284	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	50.6776303927307	902	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCCGTGATACCTTCTGG	248	False	NA	50	True	NA	NA	NA	80765906	80767593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80766194_80766281_80766384_80766862_80767080_80767366
ENSMUSG00000015312.10_80765907_80767593_2	chr10	+	839	4	FSM	ENSMUSG00000015312.10	ENSMUST00000015456.10	1284	4	0	445	0	0	multi-exon	FALSE	canonical	3	88	junction_3	10.2089285540757	972	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCCGTGATACCTTCTGG	248	False	NA	50	True	NA	NA	NA	80765906	80767593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80766194_80766281_80766384_80766862_80767086_80767366
ENSMUSG00000015335.17_29980956_29983636_1	chr2	-	1241	4	FSM	ENSMUSG00000015335.17	ENSMUST00000137001.2	846	4	-8	-387	-8	0	multi-exon	FALSE	canonical	3	619	junction_3	30.9443945740671	2366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGTGGACTCTTTCC	NA	False	NA	-3	True	ATTAAA	-16	NA	29983636	29980955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_29981846_29981999_29982078_29982416_29982554_29983500
ENSMUSG00000015337.6_30061505_30064081_1	chr2	+	565	3	NNC	ENSMUSG00000015337.6	novel	1063	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	184.5	172	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTCCTGTCCTGCTGCTT	NA	False	NA	34	True	NA	NA	NA	30061504	30064081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_30061581_30062853_30062964_30063702
ENSMUSG00000015337.6_30061940_30064081_1	chr2	+	628	3	FSM	ENSMUSG00000015337.6	ENSMUST00000015481.6	1063	3	435	0	435	0	multi-exon	FALSE	canonical	3	314	junction_1	35	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTCCTGTCCTGCTGCTT	15	False	NA	34	True	NA	NA	NA	30061939	30064081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_30062079_30062853_30062964_30063702
ENSMUSG00000015337.6_30063483_30068462_1	chr2	+	1797	12	NNC	ENSMUSG00000015337.6	novel	1063	3	NA	NA	1978	4381	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1197	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTAGCCTCGCCTCTTCC	757	False	NA	NA	False	NA	NA	NA	30063482	30068462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067734_30067931_30067978_30068409
ENSMUSG00000015337.6_30063483_30068462_2	chr2	+	2003	11	NIC	ENSMUSG00000015337.6	novel	1063	3	NA	NA	1978	4381	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTAGCCTCGCCTCTTCC	757	False	NA	NA	False	NA	NA	NA	30063482	30068462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067978_30068401
ENSMUSG00000015341.18_23732425_23747082_1	chr8	-	721	6	FSM	ENSMUSG00000015341.18	ENSMUST00000051094.9	1792	6	8	1063	0	-143	multi-exon	FALSE	canonical	3	715	junction_5	234.329170185873	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCAAAGCCATTTAAAACAC	NA	False	NA	NA	False	AATAAA	-22	NA	23747082	23732424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689_23746823_23747035
ENSMUSG00000015354.9_95519792_95522258_1	chr9	+	1689	2	ISM	ENSMUSG00000015354.9	ENSMUST00000015498.9	4438	9	138	57891	138	-54478	5prime_fragment	FALSE	canonical	3	310	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAGAAAAAAAAAAAGA	8513	False	NA	NA	False	NA	NA	NA	95519791	95522258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_95519927_95520704
ENSMUSG00000015354.9_95519792_95577217_1	chr9	+	1368	9	FSM	ENSMUSG00000015354.9	ENSMUST00000015498.9	4438	9	138	2932	138	481	multi-exon	FALSE	canonical	3	281	junction_3	14.5982661641717	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAACCACGCTA	8513	False	NA	NA	False	NA	NA	NA	95519791	95577217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_95519927_95520704_95520814_95552057_95552314_95560397_95560523_95563585_95563723_95568738_95568894_95574913_95574998_95576676_95576845_95577018
ENSMUSG00000015363.14_88960275_88970336_1	chr15	+	1436	10	FSM	ENSMUSG00000015363.14	ENSMUST00000081702.12	2439	10	59	944	0	0	multi-exon	FALSE	canonical	3	86	junction_1	6.70175948888899	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGGCTTCCCAGCAGCC	NA	False	NA	NA	False	AATAAA	-19	NA	88960274	88970336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_88960345_88965182_88965248_88965555_88965635_88966153_88966321_88966853_88966995_88968900_88969012_88969105_88969246_88969476_88969650_88969728_88969841_88969958
ENSMUSG00000015467.15_34824835_34832392_1	chr17	-	2159	7	NIC	ENSMUSG00000015467.15	novel	1478	5	NA	NA	1902	7488	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGGTCTATGATGGGCA	7047	False	NA	NA	False	GGGGCT	-10	NA	34832392	34824834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_34825146_34829418_34829619_34829845_34829980_34830247_34830424_34830578_34830675_34830764_34830841_34831226
ENSMUSG00000015474.17_34835636_34847166_1	chr17	-	1674	9	NIC	ENSMUSG00000015474.17	novel	1710	9	NA	NA	-153	0	combination_of_known_junctions	FALSE	canonical	2	13	junction_8	19.4148783153539	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGCTTGGCTTATTCCCA	9920	False	NA	0	True	AATAAA	-17	NA	34847166	34835635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34847091
ENSMUSG00000015478.14_34820065_34822379_1	chr17	-	953	6	FSM	ENSMUSG00000015478.14	ENSMUST00000015622.8	1238	6	285	0	-29	0	multi-exon	FALSE	canonical	3	1022	junction_5	40.2124358874217	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTCCCCAGTCTCTCCC	1080	False	NA	-23	True	NA	NA	NA	34822379	34820064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34820641_34820714_34820833_34820907_34820963_34821058_34821172_34821264_34821284_34822307
ENSMUSG00000015478.14_34820065_34822635_1	chr17	-	1209	6	FSM	ENSMUSG00000015478.14	ENSMUST00000015622.8	1238	6	29	0	0	0	multi-exon	FALSE	canonical	3	1022	junction_5	40.2124358874217	5700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTCCCCAGTCTCTCCC	824	False	NA	-23	True	NA	NA	NA	34822635	34820064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34820641_34820714_34820833_34820907_34820963_34821058_34821172_34821264_34821284_34822307
ENSMUSG00000015478.14_34820065_34822635_2	chr17	-	1202	5	NNC	ENSMUSG00000015478.14	novel	1238	6	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_4	470.136682253151	1698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTCCCCAGTCTCTCCC	824	False	NA	-23	True	NA	NA	NA	34822635	34820064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_34820641_34820714_34820833_34820907_34820963_34821058_34821172_34822295
ENSMUSG00000015478.14_34820065_34822635_3	chr17	-	1154	5	NIC	ENSMUSG00000015478.14	novel	1238	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	17	junction_2	458.87927333886	499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTCCCCAGTCTCTCCC	824	False	NA	-23	True	NA	NA	NA	34822635	34820064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_34820641_34820714_34820833_34821058_34821172_34821264_34821284_34822307
ENSMUSG00000015522.19_95341715_95368179_1	chr3	+	379	5	NNC	ENSMUSG00000015522.19	novel	4260	21	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	128.63587174657	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGGTTTTACTTTTAG	NA	False	NA	NA	False	ATTAAA	-21	NA	95341714	95368179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95368160
ENSMUSG00000015536.15_114954795_114965265_2	chr13	+	1080	7	NIC	ENSMUSG00000015536.15	novel	1193	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_5	58.0672502840935	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCCTGTCTCCTTTTTA	NA	False	NA	NA	False	AATAAA	-24	NA	114954794	114965265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746_114961802_114962693_114962818_114964824
ENSMUSG00000015536.15_114954795_114965265_3	chr13	+	1054	6	FSM	ENSMUSG00000015536.15	ENSMUST00000166176.9	1855	6	0	801	0	0	multi-exon	FALSE	canonical	3	20	junction_1	59.3450924677011	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCCTGTCTCCTTTTTA	NA	False	NA	NA	False	AATAAA	-24	NA	114954794	114965265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_114954860_114957337_114957483_114961102_114961231_114961746_114961898_114962693_114962818_114964824
ENSMUSG00000015542.18_115073658_115078115_1	chr11	-	1096	7	NNC	ENSMUSG00000015542.18	novel	1204	7	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	51.6139516022558	610	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTTGTTTGTTCACC	NA	False	NA	-5	True	AGTAAA	-16	NA	115078115	115073657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_115074092_115074180_115074276_115074450_115074504_115075308_115075453_115075832_115075943_115077574_115077664_115077944
ENSMUSG00000015542.18_115073658_115078181_1	chr11	-	1154	7	NNC	ENSMUSG00000015542.18	novel	1204	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	49.7016096318821	1178	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTTGTTTGTTCACC	NA	False	NA	-5	True	AGTAAA	-16	NA	115078181	115073657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_115074092_115074180_115074261_115074450_115074511_115075308_115075453_115075832_115075943_115077574_115077664_115077944
ENSMUSG00000015542.18_115073658_115078181_2	chr11	-	1450	6	ISM	ENSMUSG00000015542.18	ENSMUST00000103039.2	1158	7	0	0	0	0	intron_retention	FALSE	canonical	2	2	junction_5	44.6345157921535	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTTGTTTGTTCACC	NA	False	NA	-5	True	AGTAAA	-16	NA	115078181	115073657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574
ENSMUSG00000015575.16_26895386_26918621_1	chr17	+	765	4	NNC	ENSMUSG00000015575.16	novel	823	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	381	junction_3	528.401993435553	12182	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCTCCAGTGTTTAAAA	NA	False	NA	37	True	AATAAA	-25	NA	26895385	26918621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_26895553_26901651_26901700_26914328_26914443_26918185
ENSMUSG00000015652.10_5786325_5799326_1	chr5	-	1107	4	NIC	ENSMUSG00000015652.10	novel	1230	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_3	12.684198393627	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTTAGTTTGTATCACA	NA	False	NA	NA	False	AATAAA	-18	NA	5799326	5786324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_5786674_5789795_5789961_5790349_5790863_5799246
ENSMUSG00000015653.14_5732640_5744052_1	chr5	-	637	3	ISM	ENSMUSG00000015653.14	ENSMUST00000015797.11	3657	6	15	11149	0	-6545	5prime_fragment	FALSE	canonical	3	27	junction_2	6.5	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGAGTACCTGGCTTCAT	5299	False	NA	NA	False	AGTAAA	-19	NA	5744052	5732639	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_5733056_5733291_5733418_5743957
ENSMUSG00000015656.18_40712572_40713857_1	chr9	+	427	3	ISM	ENSMUSG00000015656.18	ENSMUST00000140984.2	1152	4	-11	818	0	0	5prime_fragment	FALSE	canonical	3	16906	junction_2	154	756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAAGTGTCCTCCATGGTT	2459	False	NA	NA	False	AATACA	-28	NA	40712571	40713857	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_40712645_40713213_40713424_40713713
ENSMUSG00000015656.18_40712572_40716496_1	chr9	+	2092	9	NNC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	7690.53829390375	61775	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2459	False	NA	10	True	AATAAA	-20	NA	40712571	40716496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715768_40715992_40716227
ENSMUSG00000015656.18_40712572_40716496_2	chr9	+	2094	9	NNC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	7912.77222280536	71291	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2459	False	NA	10	True	AATAAA	-20	NA	40712571	40716496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715043_40715239_40715460_40715660_40715758_40715992_40716227
ENSMUSG00000015656.18_40712572_40716496_3	chr9	+	2095	9	NNC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	246	junction_8	7347.50570665821	62634	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2459	False	NA	10	True	AATAAA	-20	NA	40712571	40716496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716234
ENSMUSG00000015656.18_40712757_40716496_1	chr9	+	2189	9	NIC	ENSMUSG00000015656.18	novel	514	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_1	7902.13270955221	27339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2644	False	NA	10	True	AATAAA	-20	NA	40712756	40716496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_40712917_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
ENSMUSG00000015659.13_6114478_6130017_1	chr17	-	1609	8	ISM	ENSMUSG00000015659.13	ENSMUST00000097432.10	4007	17	-1	22007	-1	746	5prime_fragment	FALSE	canonical	3	78	junction_3	11.8545608204141	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCCCACAGAGCAGGTTT	2592	False	NA	NA	False	GATAAA	-45	NA	6130017	6114477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_6115353_6116945_6117068_6117803_6117936_6119573_6119664_6121027_6121165_6122108_6122146_6124430_6124523_6129893
ENSMUSG00000015668.14_99666492_99669541_1	chrX	-	1008	7	NNC	ENSMUSG00000015668.14	novel	1626	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	208.783314041669	3113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTACTGCTTGAATATAA	NA	False	NA	-7	True	AATAAA	-14	NA	99669541	99666491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669476
ENSMUSG00000015668.14_99666492_99669541_2	chrX	-	998	7	NNC	ENSMUSG00000015668.14	novel	1626	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	208.783314041669	2764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTACTGCTTGAATATAA	NA	False	NA	-7	True	AATAAA	-14	NA	99669541	99666491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669486
ENSMUSG00000015668.14_99666492_99669541_3	chrX	-	980	6	NNC	ENSMUSG00000015668.14	novel	1626	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	228.618459447176	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTACTGCTTGAATATAA	NA	False	NA	-7	True	AATAAA	-14	NA	99669541	99666491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_99667082_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669491
ENSMUSG00000015668.14_99666492_99669541_4	chrX	-	1366	5	NIC	ENSMUSG00000015668.14	novel	1626	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	301	junction_4	119.69962405956	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTACTGCTTGAATATAA	NA	False	NA	-7	True	AATAAA	-14	NA	99669541	99666491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669491
ENSMUSG00000015671.12_14787825_14800174_1	chr13	+	849	8	NNC	ENSMUSG00000015671.12	novel	2911	8	NA	NA	0	-2047	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1622.04870457086	5794	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAGTTTTTAAGAGTAAA	NA	False	NA	14	True	AATAAA	-14	NA	14787824	14800174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14793995_14795309_14795392_14798182_14798257_14799787_14799846_14799933
ENSMUSG00000015671.12_14787825_14800174_10	chr13	+	848	7	NNC	ENSMUSG00000015671.12	novel	2911	8	NA	NA	0	-2047	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1761.40661120594	709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAGTTTTTAAGAGTAAA	NA	False	NA	14	True	AATAAA	-14	NA	14787824	14800174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798271_14799905
ENSMUSG00000015671.12_14787825_14800174_11	chr13	+	849	8	NNC	ENSMUSG00000015671.12	novel	2911	8	NA	NA	0	-2047	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1626.99130110691	6175	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAGTTTTTAAGAGTAAA	NA	False	NA	14	True	AATAAA	-14	NA	14787824	14800174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_14787901_14790596_14790674_14791321_14791455_14793901_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
ENSMUSG00000015671.12_14787825_14800174_12	chr13	+	851	8	NNC	ENSMUSG00000015671.12	novel	2911	8	NA	NA	0	-2047	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1640.64072849603	7134	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAGTTTTTAAGAGTAAA	NA	False	NA	14	True	AATAAA	-14	NA	14787824	14800174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_14787901_14790609_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
ENSMUSG00000015671.12_14787825_14800174_13	chr13	+	834	7	NNC	ENSMUSG00000015671.12	novel	2911	8	NA	NA	0	-2047	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	1761.40661120594	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAGTTTTTAAGAGTAAA	NA	False	NA	14	True	AATAAA	-14	NA	14787824	14800174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799905
ENSMUSG00000015671.12_14787825_14800174_15	chr13	+	860	8	NNC	ENSMUSG00000015671.12	novel	2911	8	NA	NA	0	-2047	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1626.99130110691	5533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAGTTTTTAAGAGTAAA	NA	False	NA	14	True	AATAAA	-14	NA	14787824	14800174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_14787901_14790596_14790674_14791321_14791466_14793901_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
ENSMUSG00000015671.12_14787825_14800174_2	chr13	+	870	8	NNC	ENSMUSG00000015671.12	novel	2911	8	NA	NA	0	-2047	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1626.99130110691	22671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAGTTTTTAAGAGTAAA	NA	False	NA	14	True	AATAAA	-14	NA	14787824	14800174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_14787901_14790596_14790674_14791321_14791461_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
ENSMUSG00000015671.12_14787825_14800174_3	chr13	+	849	8	NNC	ENSMUSG00000015671.12	novel	2911	8	NA	NA	0	-2047	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1596.10964535648	3006	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAGTTTTTAAGAGTAAA	NA	False	NA	14	True	AATAAA	-14	NA	14787824	14800174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_14787901_14790596_14790674_14791336_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
ENSMUSG00000015671.12_14787825_14800174_4	chr13	+	853	8	NNC	ENSMUSG00000015671.12	novel	2911	8	NA	NA	0	-2047	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1642.66581494589	7820	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAGTTTTTAAGAGTAAA	NA	False	NA	14	True	AATAAA	-14	NA	14787824	14800174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799798_14799846_14799933
ENSMUSG00000015671.12_14787825_14800174_5	chr13	+	842	8	NNC	ENSMUSG00000015671.12	novel	2911	8	NA	NA	0	-2047	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1626.99130110691	2513	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAGTTTTTAAGAGTAAA	NA	False	NA	14	True	AATAAA	-14	NA	14787824	14800174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_14787901_14790596_14790674_14791321_14791433_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
ENSMUSG00000015671.12_14787825_14800174_6	chr13	+	855	8	NNC	ENSMUSG00000015671.12	novel	2911	8	NA	NA	0	-2047	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1626.99130110691	3871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAGTTTTTAAGAGTAAA	NA	False	NA	14	True	AATAAA	-14	NA	14787824	14800174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_14787901_14790596_14790674_14791321_14791461_14793901_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
ENSMUSG00000015671.12_14787825_14800174_7	chr13	+	872	8	NNC	ENSMUSG00000015671.12	novel	2911	8	NA	NA	0	-2047	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1596.10964535648	18021	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAGTTTTTAAGAGTAAA	NA	False	NA	14	True	AATAAA	-14	NA	14787824	14800174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_14787901_14790596_14790682_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
ENSMUSG00000015671.12_14787825_14800174_8	chr13	+	859	8	NNC	ENSMUSG00000015671.12	novel	2911	8	NA	NA	0	-2047	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1596.10964535648	6458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAGTTTTTAAGAGTAAA	NA	False	NA	14	True	AATAAA	-14	NA	14787824	14800174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_14787901_14790596_14790684_14791336_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
ENSMUSG00000015671.12_14787825_14800174_9	chr13	+	859	8	NNC	ENSMUSG00000015671.12	novel	2911	8	NA	NA	0	-2047	at_least_one_novel_splicesite	FALSE	canonical	2	143	junction_7	1591.22562183741	28864	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAGTTTTTAAGAGTAAA	NA	False	NA	14	True	AATAAA	-14	NA	14787824	14800174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799938
ENSMUSG00000015672.5_14784710_14787617_1	chr13	-	939	3	FSM	ENSMUSG00000015672.5	ENSMUST00000220621.2	3013	3	133	1941	-5	0	multi-exon	FALSE	canonical	3	1082	junction_1	15.5	12195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	14787617	14784709	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_14785326_14786007_14786190_14787476
ENSMUSG00000015672.5_14784958_14787617_2	chr13	-	691	3	FSM	ENSMUSG00000015672.5	ENSMUST00000220621.2	3013	3	133	2189	-5	0	multi-exon	FALSE	canonical	3	1082	junction_1	15.5	3258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAGTTGTTACTTTTAAA	NA	False	NA	-83	True	TTTAAA	-9	NA	14787617	14784957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_14785326_14786007_14786190_14787476
ENSMUSG00000015697.15_95222578_95230910_1	chr3	-	2221	10	NIC	ENSMUSG00000015697.15	novel	5652	21	NA	NA	33490	8258	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1026	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGGGCCGGGTCCTCTCC	1263	False	NA	NA	False	NA	NA	NA	95230910	95222577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228559_95228646_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
ENSMUSG00000015697.15_95222578_95230910_2	chr3	-	2033	11	NIC	ENSMUSG00000015697.15	novel	5652	21	NA	NA	33490	8258	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1022	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGGGCCGGGTCCTCTCC	1263	False	NA	NA	False	NA	NA	NA	95230910	95222577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228559_95228646_95228698_95228885_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
ENSMUSG00000015697.15_95222578_95230910_3	chr3	-	2309	9	NIC	ENSMUSG00000015697.15	novel	5652	21	NA	NA	33490	8258	intron_retention	FALSE	non_canonical	0	0	junction_1	0	133	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGGGCCGGGTCCTCTCC	1263	False	NA	NA	False	NA	NA	NA	95230910	95222577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
ENSMUSG00000015697.15_95230836_95235939_1	chr3	-	2002	8	ISM	ENSMUSG00000015697.15	ENSMUST00000124638.8	5652	21	28527	0	28461	0	3prime_fragment	FALSE	canonical	3	215	junction_2	13.7573727914326	111	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGGTCTGAAATGGTC	5231	False	NA	-4	True	ATTAAA	-15	NA	95235939	95230835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858
ENSMUSG00000015733.14_17637034_17666381_1	chr6	+	1895	10	FSM	ENSMUSG00000015733.14	ENSMUST00000015877.14	2537	10	52	590	0	-590	multi-exon	FALSE	canonical	3	1705	junction_7	87.4846018197234	4520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTTTGTATATTGTCAT	-4	True	NA	32	True	AGTAAA	-39	NA	17637033	17666381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
ENSMUSG00000015733.14_17637034_17666723_1	chr6	+	2237	10	FSM	ENSMUSG00000015733.14	ENSMUST00000015877.14	2537	10	52	248	0	-248	multi-exon	FALSE	canonical	3	1705	junction_7	87.4846018197234	5859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTATAGATTTTTAAAAAT	-4	True	NA	-18	True	AATAAA	-19	NA	17637033	17666723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
ENSMUSG00000015747.6_95907144_95965038_1	chr3	-	1897	15	FSM	ENSMUSG00000015747.6	ENSMUST00000015891.6	2637	15	740	0	-7	0	multi-exon	TRUE	canonical	3	42	junction_11	13.9571136130707	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTTCAGTGTTTGATGG	NA	False	NA	-5	True	AATAAA	-26	NA	95965038	95907143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95907464_95926920_95927053_95938317_95938440_95940090_95940199_95940976_95941136_95948649_95948818_95949620_95949735_95950105_95950241_95953663_95953775_95954309_95954448_95954558_95954628_95955619_95955700_95960350_95960412_95964291_95964427_95964993
ENSMUSG00000015747.6_95907144_95965157_1	chr3	-	2016	15	FSM	ENSMUSG00000015747.6	ENSMUST00000015891.6	2637	15	621	0	-15	0	multi-exon	FALSE	canonical	3	42	junction_11	13.9571136130707	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTTCAGTGTTTGATGG	NA	False	NA	-5	True	AATAAA	-26	NA	95965157	95907143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95907464_95926920_95927053_95938317_95938440_95940090_95940199_95940976_95941136_95948649_95948818_95949620_95949735_95950105_95950241_95953663_95953775_95954309_95954448_95954558_95954628_95955619_95955700_95960350_95960412_95964291_95964427_95964993
ENSMUSG00000015747.6_95964199_95965157_1	chr3	-	392	2	FSM	ENSMUSG00000015747.6	ENSMUST00000140518.2	266	2	-126	0	-15	0	multi-exon	FALSE	canonical	3	103	junction_1	0	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGGCATCATAATTATC	NA	False	NA	NA	False	AATAAA	-16	NA	95965157	95964198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95964427_95964993
ENSMUSG00000015748.14_95737934_95741448_1	chr3	-	540	4	NNC	ENSMUSG00000015748.14	novel	2732	16	NA	NA	-1328	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	220.989190283648	496	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAGTATGATATTTTT	NA	False	NA	-38	True	ATTAAA	-12	NA	95741448	95737933	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_95738271_95739868_95739935_95741064_95741149_95741395
ENSMUSG00000015748.14_95737934_95741448_2	chr3	-	543	4	ISM	ENSMUSG00000015748.14	ENSMUST00000160155.8	2548	13	15438	4	-1328	0	3prime_fragment	FALSE	canonical	3	427	junction_1	21.0449254902195	1978	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAGTATGATATTTTT	NA	False	NA	-38	True	ATTAAA	-12	NA	95741448	95737933	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395
ENSMUSG00000015748.14_95737934_95742784_1	chr3	-	728	5	ISM	ENSMUSG00000015748.14	ENSMUST00000160155.8	2548	13	14102	4	193	0	3prime_fragment	FALSE	canonical	3	427	junction_1	20.0561711201316	2978	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAGTATGATATTTTT	NA	False	NA	-38	True	ATTAAA	-12	NA	95742784	95737933	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665
ENSMUSG00000015749.13_95836595_95852878_1	chr3	+	1407	7	NNC	ENSMUSG00000015749.13	novel	3274	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	586.704567904495	5422	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGTGTAGTTTGGTGCA	NA	False	NA	13	True	ATTAAA	-16	NA	95836594	95852878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845199_95845352_95851618_95851674_95852491
ENSMUSG00000015749.13_95836595_95854702_1	chr3	+	3201	7	FSM	ENSMUSG00000015749.13	ENSMUST00000015893.13	1381	7	5	-1825	0	0	multi-exon	FALSE	canonical	3	152	junction_5	557.690301352123	6738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTTCAGTGTGTGATTG	NA	False	NA	105	True	AATAAA	-22	NA	95836594	95854702	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845316_95851618_95851674_95852491
ENSMUSG00000015749.13_95836853_95852878_1	chr3	+	1119	7	FSM	ENSMUSG00000015749.13	ENSMUST00000015893.13	1381	7	263	-1	0	1	multi-exon	FALSE	canonical	3	152	junction_5	557.690301352123	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGTGTAGTTTGGTGCA	NA	False	NA	13	True	ATTAAA	-16	NA	95836852	95852878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845316_95851618_95851674_95852491
ENSMUSG00000015757.11_7668685_7685360_1	chr10	+	1220	11	NNC	ENSMUSG00000015757.11	novel	3471	13	NA	NA	0	2230	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_10	81.8537720572485	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTAGGCTGTATTGATTT	1152	False	NA	NA	False	AATAAA	-20	NA	7668684	7685360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7685152
ENSMUSG00000015757.11_7668685_7697422_1	chr10	+	1964	13	FSM	ENSMUSG00000015757.11	ENSMUST00000015901.11	3471	13	30	1477	0	-1477	multi-exon	FALSE	canonical	3	182	junction_12	33.3716446503115	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTCCTTCTGTGACTTT	1152	False	NA	NA	False	NA	NA	NA	7668684	7697422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7686125_7686223_7690427_7690576_7696715
ENSMUSG00000015757.11_7668685_7698327_1	chr10	+	2869	13	FSM	ENSMUSG00000015757.11	ENSMUST00000015901.11	3471	13	30	572	0	-572	multi-exon	FALSE	canonical	3	182	junction_12	33.3716446503115	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTTACTTTTTTCTT	1152	False	NA	10	True	AGTAAA	-15	NA	7668684	7698327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7686125_7686223_7690427_7690576_7696715
ENSMUSG00000015759.12_47013127_47025791_1	chr14	-	1351	5	NNC	ENSMUSG00000015759.12	novel	789	6	NA	NA	0	-103	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	230.767604962222	4650	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTTTGCTGTGCATTGT	NA	False	NA	NA	False	AATAAA	-14	NA	47025791	47013126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_47014007_47016345_47016490_47017569_47017683_47021568_47021631_47025639
ENSMUSG00000015776.13_26795274_26800689_1	chr2	-	1407	4	FSM	ENSMUSG00000015776.13	ENSMUST00000015920.12	973	4	-108	-326	0	0	multi-exon	FALSE	canonical	3	133	junction_1	17.7951304200522	767	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTCTGTCTTTCTTGAT	NA	False	NA	-4	True	AATAAA	-18	NA	26800689	26795273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_26796006_26798104_26798314_26799004_26799086_26800304
ENSMUSG00000015790.17_26803393_26806347_1	chr2	-	1091	8	NIC	ENSMUSG00000015790.17	novel	1151	9	NA	NA	-3	0	intron_retention	FALSE	canonical	3	32	junction_6	116.811727116059	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTCAGTCTGAAACCGT	NA	False	NA	-3	True	AATAAA	-21	NA	26806347	26803392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805782_26805966_26806019_26806268
ENSMUSG00000015790.17_26803393_26806347_2	chr2	-	1020	9	FSM	ENSMUSG00000015790.17	ENSMUST00000167661.7	1151	9	133	-2	-3	0	multi-exon	FALSE	canonical	3	32	junction_7	110.059571937201	2341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTCAGTCTGAAACCGT	NA	False	NA	-3	True	AATAAA	-21	NA	26806347	26803392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805782_26805966_26806019_26806268
ENSMUSG00000015790.17_26803393_26806347_3	chr2	-	1015	8	NNC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	-3	0	intron_retention	FALSE	canonical	3	36	junction_3	115.47347075835	227	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTCAGTCTGAAACCGT	NA	False	NA	-3	True	AATAAA	-21	NA	26806347	26803392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_26803671_26803924_26804088_26804186_26804224_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
ENSMUSG00000015790.17_26803393_26806347_4	chr2	-	944	9	NNC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_4	108.788498932562	456	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTCAGTCTGAAACCGT	NA	False	NA	-3	True	AATAAA	-21	NA	26806347	26803392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804224_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
ENSMUSG00000015790.17_26803393_26806347_5	chr2	-	744	7	NIC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_2	125.371004976784	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTCAGTCTGAAACCGT	NA	False	NA	-3	True	AATAAA	-21	NA	26806347	26803392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_26803518_26803588_26803671_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
ENSMUSG00000015790.17_26803393_26806347_6	chr2	-	974	9	NNC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	120.034370077907	1792	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTCAGTCTGAAACCGT	NA	False	NA	-3	True	AATAAA	-21	NA	26806347	26803392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806013_26806268
ENSMUSG00000015790.17_26803393_26806347_7	chr2	-	1051	8	NIC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	-3	0	intron_retention	FALSE	canonical	3	328	junction_3	29.0460577254084	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTCAGTCTGAAACCGT	NA	False	NA	-3	True	AATAAA	-21	NA	26806347	26803392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
ENSMUSG00000015790.17_26803393_26806347_8	chr2	-	791	8	NIC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_4	125.628542187852	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTCAGTCTGAAACCGT	NA	False	NA	-3	True	AATAAA	-21	NA	26806347	26803392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26805443_26805527_26805607_26805742_26805966_26806019_26806268
ENSMUSG00000015790.17_26803393_26806542_1	chr2	-	1246	8	NIC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	328	junction_3	29.0460577254084	1696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTCAGTCTGAAACCGT	NA	False	NA	-3	True	AATAAA	-21	NA	26806542	26803392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
ENSMUSG00000015790.17_26805269_26806358_1	chr2	-	534	4	ISM	ENSMUSG00000015790.17	ENSMUST00000183520.8	975	9	-46	1874	-1	200	5prime_fragment	FALSE	canonical	3	329	junction_2	5.35412613473634	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGATTTCCCTTTTCAGG	NA	False	NA	NA	False	CATAAA	-22	NA	26806358	26805268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_26805527_26805607_26805742_26805966_26806019_26806268
ENSMUSG00000015804.15_45677645_45682943_1	chr5	+	811	4	FSM	ENSMUSG00000015804.15	ENSMUST00000156481.8	4560	4	74	3675	0	3	multi-exon	FALSE	canonical	3	1736	junction_3	82.366390124991	4896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTTGTTGTTTGTATTC	7406	False	NA	25	True	AGTAAA	-14	NA	45677644	45682943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_45677827_45679777_45679845_45680763_45680877_45682494
ENSMUSG00000015806.13_45591395_45607529_1	chr5	-	1323	7	NNC	ENSMUSG00000015806.13	novel	1380	7	NA	NA	-11	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	371.301614444226	5521	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	False	NA	-19	True	AATAAA	-15	NA	45607529	45591394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_45592021_45595184_45595269_45596634_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607348
ENSMUSG00000015837.16_50090979_50101618_1	chr11	-	1887	8	FSM	ENSMUSG00000015837.16	ENSMUST00000015981.12	2673	8	0	786	0	0	multi-exon	TRUE	canonical	3	390	junction_1	128.516496201532	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGTGATCCGTACGAGT	NA	False	NA	-14	True	AATAAA	-22	NA	50101618	50090978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_50091775_50093339_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
ENSMUSG00000015839.7_75505857_75534860_1	chr2	-	2350	5	FSM	ENSMUSG00000015839.7	ENSMUST00000102672.5	2475	5	125	0	-27	0	multi-exon	FALSE	canonical	3	494	junction_1	38.2058568808501	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGACTTTTTGAATTTA	NA	False	NA	1	True	AATAAA	-22	NA	75534860	75505856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
ENSMUSG00000015839.7_75521547_75534860_1	chr2	-	1323	2	FSM	ENSMUSG00000015839.7	ENSMUST00000152371.2	1447	2	-27	151	-27	-151	multi-exon	FALSE	canonical	3	19	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCACTGTGTTGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	75534860	75521546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_75522717_75534707
ENSMUSG00000015869.17_116361671_116368117_1	chr11	-	1019	4	FSM	ENSMUSG00000015869.17	ENSMUST00000142480.2	912	4	448	-555	448	0	multi-exon	FALSE	canonical	3	859	junction_1	35.565276448931	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGCTGCTGAGCTCCCAG	NA	False	NA	-7	True	AATAAA	-27	NA	116368117	116361670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116362382_116363002_116363150_116363769_116363841_116368027
ENSMUSG00000015869.17_116361671_116380990_1	chr11	-	1657	10	FSM	ENSMUSG00000015869.17	ENSMUST00000106391.8	1841	10	184	0	125	0	multi-exon	FALSE	canonical	3	803	junction_5	49.0028973696177	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGCTGCTGAGCTCCCAG	NA	False	NA	-7	True	AATAAA	-27	NA	116380990	116361670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116362382_116363002_116363150_116363769_116363841_116368027_116368174_116368885_116368942_116369350_116369467_116370477_116370651_116376694_116376762_116378943_116378997_116380873
ENSMUSG00000015880.14_45827261_45857469_1	chr5	+	3284	21	FSM	ENSMUSG00000015880.14	ENSMUST00000117396.3	3703	21	0	419	0	0	multi-exon	FALSE	canonical	3	453	junction_14	43.4953733171702	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTATACTCAGTATTTAT	NA	False	NA	18	True	ATTAAA	-25	NA	45827260	45857469	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
ENSMUSG00000015880.14_45853416_45857469_2	chr5	+	517	4	ISM	ENSMUSG00000015880.14	ENSMUST00000198274.2	2440	14	18159	-54	-2592	0	3prime_fragment	FALSE	canonical	3	504	junction_1	35.3364778474973	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTATACTCAGTATTTAT	NA	False	NA	18	True	ATTAAA	-25	NA	45853415	45857469	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_45853511_45853814_45853887_45856182_45856253_45857189
ENSMUSG00000015882.19_45858671_46014843_1	chr5	-	1446	7	FSM	ENSMUSG00000015882.19	ENSMUST00000045586.13	5708	7	114	4148	0	-879	multi-exon	FALSE	canonical	3	11	junction_1	22.5197444232586	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTATCAGTTCCCTTTC	NA	False	NA	NA	False	ATTAAA	-28	NA	46014843	45858670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_45859340_45893072_45893167_45904397_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014688
ENSMUSG00000015932.9_143757469_143784252_1	chr2	+	690	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	229	992	229	-992	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATTTGTCTTGTCATCTT	NA	False	NA	18	True	AGTAAA	-30	NA	143757468	143784252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
ENSMUSG00000015932.9_143757469_143784373_1	chr2	+	811	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	229	871	229	-871	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGTTTTCATGAGGTGA	NA	False	NA	11	True	ATTAAA	-16	NA	143757468	143784373	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
ENSMUSG00000015932.9_143757469_143785244_1	chr2	+	1682	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	229	0	229	0	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	7405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCTTTGTGTGGTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	143757468	143785244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
ENSMUSG00000015937.16_56221435_56283253_1	chr13	-	1852	9	FSM	ENSMUSG00000015937.16	ENSMUST00000016081.13	2046	9	191	3	0	0	multi-exon	FALSE	canonical	3	557	junction_5	233.718279933342	741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGACTGGCCGTGTTTTGTGT	6096	False	NA	-8	True	AGTAAA	-15	NA	56283253	56221434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244048_56252114_56252313_56252701_56252809_56276089_56276295_56283158
ENSMUSG00000015937.16_56221435_56283722_1	chr13	-	1865	9	NIC	ENSMUSG00000015937.16	novel	2046	9	NA	NA	-278	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_8	438.229516777453	735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGACTGGCCGTGTTTTGTGT	5627	False	NA	-8	True	AGTAAA	-15	NA	56283722	56221434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244048_56252114_56252313_56252701_56252809_56276089_56276295_56283614
ENSMUSG00000015961.9_177590742_177624067_1	chr1	-	2547	13	FSM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	10	214	0	0	multi-exon	FALSE	canonical	3	944	junction_9	76.3848079718008	1609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGTGTGTTGTTTTTC	NA	False	NA	-3	True	ATTAAA	-22	NA	177624067	177590741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
ENSMUSG00000015961.9_177591097_177624067_1	chr1	-	2192	13	FSM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	10	569	0	-355	multi-exon	FALSE	canonical	3	944	junction_9	76.3848079718008	1095	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATGGATATTTTTCTTT	NA	False	NA	-3	True	ATTAAA	-19	NA	177624067	177591096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
ENSMUSG00000015971.6_29700374_29715176_1	chr14	+	2039	13	FSM	ENSMUSG00000015971.6	ENSMUST00000016115.6	2119	13	80	0	0	0	multi-exon	FALSE	canonical	3	289	junction_4	26.6816364232448	757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACACTGATTTGAGATAAT	NA	False	NA	21	True	ATTAAA	-25	NA	29700373	29715176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917
ENSMUSG00000015980.15_138815499_138822889_1	chr7	+	708	4	NNC	ENSMUSG00000015980.15	novel	527	3	NA	NA	-310	1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	4.02768199119819	66	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAACTGTTCTCTTCTGT	NA	False	NA	NA	False	ATTAAA	-21	NA	138815498	138822889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_138815610_138816785_138816905_138818491_138818616_138822535
ENSMUSG00000016018.5_112935755_113004305_2	chr13	-	1002	5	NNC	ENSMUSG00000016018.5	novel	3689	27	NA	NA	5248	68197	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	57	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGTTTACTAAGAGAGTG	NA	False	NA	NA	False	NA	NA	NA	113004305	112935754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_112935912_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUSG00000016018.5_112935755_113004428_1	chr13	-	1125	5	NNC	ENSMUSG00000016018.5	novel	498	4	NA	NA	5125	68197	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	157	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGTTTACTAAGAGAGTG	NA	False	NA	NA	False	NA	NA	NA	113004428	112935754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_112935912_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUSG00000016018.5_112935755_113004428_2	chr13	-	1280	6	NNC	ENSMUSG00000016018.5	novel	498	4	NA	NA	5125	68197	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	194	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGTTTACTAAGAGAGTG	NA	False	NA	NA	False	NA	NA	NA	113004428	112935754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_112935912_112971392_112971548_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUSG00000016018.5_112937326_113004305_1	chr13	-	1475	6	NIC	ENSMUSG00000016018.5	novel	3689	27	NA	NA	5248	66626	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGCGCGGGGACGAAACCC	NA	False	NA	NA	False	NA	NA	NA	113004305	112937325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_112937801_112971392_112971548_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUSG00000016018.5_113004389_113017561_1	chr13	-	621	6	ISM	ENSMUSG00000016018.5	ENSMUST00000022281.5	3689	27	46371	437	500	0	3prime_fragment	FALSE	canonical	3	630	junction_4	30.5195019618604	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCAACATCATTCTGAGA	4459	False	NA	-105	True	NA	NA	NA	113017561	113004388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_113004530_113005544_113005650_113009432_113009596_113011129_113011187_113012969_113013076_113017512
ENSMUSG00000016018.5_113004389_113063917_1	chr13	-	3237	27	FSM	ENSMUSG00000016018.5	ENSMUST00000022281.5	3689	27	15	437	-11	0	multi-exon	FALSE	canonical	3	524	junction_21	59.6473487509525	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCAACATCATTCTGAGA	7251	False	NA	-105	True	NA	NA	NA	113063917	113004388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_113004530_113005544_113005650_113009432_113009596_113011129_113011187_113012969_113013076_113017512_113017677_113019633_113019823_113023288_113023400_113023968_113024098_113027812_113027882_113028421_113028595_113032006_113032158_113035298_113035425_113038006_113038109_113039932_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113046349_113046449_113047443_113047569_113049633_113049725_113050889_113051065_113054122_113054236_113055101_113055165_113056893_113056961_113058163_113058302_113063763
ENSMUSG00000016200.15_192705816_192718031_1	chr1	-	309	3	NNC	ENSMUSG00000016200.15	novel	9274	9	NA	NA	-6	-93445	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	9	98	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGTGTCTGGAATCTTA	180	False	NA	NA	False	AATAAA	-42	NA	192718031	192705815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_192705976_192709277_192709326_192717930
ENSMUSG00000016253.13_174257644_174269295_1	chr2	+	2225	15	NNC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	157.844682766164	681	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATTTTACTCATTTCTT	NA	False	NA	40	True	AATAAA	-21	NA	174257643	174269295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264366_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
ENSMUSG00000016253.13_174257644_174269295_2	chr2	+	2226	15	NNC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	148.36931650996	934	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATTTTACTCATTTCTT	NA	False	NA	40	True	AATAAA	-21	NA	174257643	174269295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_174257750_174261825_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
ENSMUSG00000016253.13_174257644_174269295_3	chr2	+	2227	15	NNC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	154.754512643973	601	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATTTTACTCATTTCTT	NA	False	NA	40	True	AATAAA	-21	NA	174257643	174269295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268114_174268206_174268281_174268423_174268609_174268740_174268823
ENSMUSG00000016253.13_174257644_174269295_4	chr2	+	2101	14	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_6	158.919241892815	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATTTTACTCATTTCTT	NA	False	NA	40	True	AATAAA	-21	NA	174257643	174269295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
ENSMUSG00000016253.13_174269286_174280089_1	chr2	+	1119	5	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	1131	10794	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACAGGTACTCATGCGGC	NA	False	NA	NA	False	NA	NA	NA	174269285	174280089	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_174269776_174270370_174270537_174270848_174271000_174275280_174275461_174279957
ENSMUSG00000016253.13_174269286_174280832_1	chr2	+	1366	7	NNC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	1131	11537	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCCCGCTGCTCCTGCC	NA	False	NA	NA	False	NA	NA	NA	174269285	174280832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_174269590_174269664_174269776_174270370_174270537_174270848_174271000_174275280_174275461_174279957_174280122_174280542
ENSMUSG00000016253.13_174269286_174280832_2	chr2	+	1435	6	NNC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	1131	11537	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4274	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCCCGCTGCTCCTGCC	NA	False	NA	NA	False	NA	NA	NA	174269285	174280832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_174269770_174270370_174270537_174270848_174271000_174275280_174275461_174279957_174280122_174280542
ENSMUSG00000016256.11_174257644_174269295_1	chr2	-	2232	15	NIC	ENSMUSG00000016256.11	novel	1441	6	NA	NA	11537	11642	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCGTGCGCCGGACACAA	6711	False	NA	NA	False	NA	NA	NA	174269295	174257643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
ENSMUSG00000016256.11_174269286_174270432_1	chr2	-	552	2	ISM	ENSMUSG00000016256.11	ENSMUST00000016400.9	1441	6	10400	0	10400	0	3prime_fragment	FALSE	canonical	3	526	junction_1	0	2485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTACTTTATTTACA	5574	False	NA	0	True	AGTAAA	-17	NA	174270432	174269285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_174269776_174270370
ENSMUSG00000016257.16_174306860_174314691_1	chr2	-	1370	6	FSM	ENSMUSG00000016257.16	ENSMUST00000016401.15	1553	6	183	0	0	0	multi-exon	FALSE	canonical	3	812	junction_2	54.463198583998	3907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCAGCTCTTCCCAT	NA	False	NA	-4	True	AATAAA	-45	NA	174314691	174306859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174311129_174311299_174314624
ENSMUSG00000016257.16_174306965_174314746_1	chr2	-	1320	6	FSM	ENSMUSG00000016257.16	ENSMUST00000016401.15	1553	6	128	105	-19	-105	multi-exon	FALSE	canonical	3	812	junction_2	54.463198583998	3122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTTTGTGATTTCGC	NA	False	NA	-5	True	AGTAAA	-19	NA	174314746	174306964	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174311129_174311299_174314624
ENSMUSG00000016257.16_174307124_174314746_1	chr2	-	1161	6	FSM	ENSMUSG00000016257.16	ENSMUST00000016401.15	1553	6	128	264	-19	254	multi-exon	FALSE	canonical	3	812	junction_2	54.463198583998	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTTTGGATTTGGTAC	NA	False	NA	NA	False	TATAAA	-21	NA	174314746	174307123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174311129_174311299_174314624
ENSMUSG00000016308.13_36138011_36146903_2	chrX	+	693	6	NNC	ENSMUSG00000016308.13	novel	1732	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	358.50991618085	12893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGTTTCTGTCTTCCC	NA	False	NA	23	True	ATTAAA	-15	NA	36138010	36146903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_36138183_36138363_36138449_36138827_36138846_36145309_36145400_36146251_36146341_36146664
ENSMUSG00000016308.13_36138011_36146903_3	chrX	+	675	5	NNC	ENSMUSG00000016308.13	novel	1732	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	391.813093196233	1337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGTTTCTGTCTTCCC	NA	False	NA	23	True	ATTAAA	-15	NA	36138010	36146903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_36138183_36138363_36138449_36145309_36145400_36146251_36146341_36146664
ENSMUSG00000016308.13_36138011_36146903_4	chrX	+	668	5	NNC	ENSMUSG00000016308.13	novel	552	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	465.46609704682	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGTTTCTGTCTTCCC	NA	False	NA	23	True	ATTAAA	-15	NA	36138010	36146903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_36138183_36138370_36138449_36145309_36145400_36146251_36146341_36146664
ENSMUSG00000016319.4_36059304_36062261_1	chrX	+	1041	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	199	0	55	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	1630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACAGATTCTCTGGGCTT	NA	False	NA	9	True	AATATA	-18	NA	36059303	36062261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
ENSMUSG00000016344.15_180829040_180830299_1	chr2	+	780	5	FSM	ENSMUSG00000016344.15	ENSMUST00000108841.2	689	5	-89	-2	0	2	multi-exon	TRUE	canonical	3	258	junction_1	248.035279748668	3046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGTATGTTTGAAACAT	3336	False	NA	3	True	AATAAA	-19	NA	180829039	180830299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_180829248_180829457_180829530_180829601_180829680_180829796_180829894_180829974
ENSMUSG00000016344.15_180829040_180830299_2	chr2	+	852	4	FSM	ENSMUSG00000016344.15	ENSMUST00000146089.8	750	4	-100	-2	0	2	multi-exon	FALSE	canonical	3	258	junction_1	285.921123544395	2525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGTATGTTTGAAACAT	3336	False	NA	3	True	AATAAA	-19	NA	180829039	180830299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_180829248_180829457_180829680_180829796_180829894_180829974
ENSMUSG00000016344.15_180829040_180830299_3	chr2	+	895	5	FSM	ENSMUSG00000016344.15	ENSMUST00000016488.13	1160	5	0	265	0	2	multi-exon	FALSE	canonical	3	201	junction_1	270.955139275859	6293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGTATGTTTGAAACAT	3336	False	NA	3	True	AATAAA	-19	NA	180829039	180830299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_180829248_180829342_180829530_180829601_180829680_180829796_180829894_180829974
ENSMUSG00000016344.15_180829040_180830299_4	chr2	+	967	4	FSM	ENSMUSG00000016344.15	ENSMUST00000127971.8	1153	4	-49	235	0	2	multi-exon	FALSE	canonical	3	201	junction_1	312.789954371229	3350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGTATGTTTGAAACAT	3336	False	NA	3	True	AATAAA	-19	NA	180829039	180830299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_180829248_180829342_180829680_180829796_180829894_180829974
ENSMUSG00000016344.15_180829140_180830299_1	chr2	+	867	4	FSM	ENSMUSG00000016344.15	ENSMUST00000127971.8	1153	4	51	235	0	2	multi-exon	FALSE	canonical	3	201	junction_1	312.789954371229	1459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGTATGTTTGAAACAT	3436	False	NA	3	True	AATAAA	-19	NA	180829139	180830299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_180829248_180829342_180829680_180829796_180829894_180829974
ENSMUSG00000016344.15_180829140_180830299_2	chr2	+	795	5	FSM	ENSMUSG00000016344.15	ENSMUST00000016488.13	1160	5	100	265	0	2	multi-exon	FALSE	canonical	3	201	junction_1	270.955139275859	4076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGTATGTTTGAAACAT	3436	False	NA	3	True	AATAAA	-19	NA	180829139	180830299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_180829248_180829342_180829530_180829601_180829680_180829796_180829894_180829974
ENSMUSG00000016409.5_36390448_36411941_1	chrX	+	1772	9	FSM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	0	2458	0	-2458	multi-exon	TRUE	canonical	3	360	junction_3	33.4381425171914	415	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTTAAGTTATTTGAGGC	NA	False	NA	NA	False	AATAAA	-19	NA	36390447	36411941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404_36400546_36403329_36403394_36405290_36405401_36405489_36405566_36406557_36406708_36411443
ENSMUSG00000016481.16_194780967_194813869_1	chr1	-	1297	9	NIC	ENSMUSG00000016481.16	novel	1501	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	78.6018447620665	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTGGTATCAGGAGTGAG	NA	False	NA	53	True	NA	NA	NA	194813869	194780966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_194781150_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813809
ENSMUSG00000016481.16_194786104_194813670_2	chr1	-	1446	10	FSM	ENSMUSG00000016481.16	ENSMUST00000075451.12	1651	10	199	6	-7	0	multi-exon	FALSE	canonical	3	104	junction_9	54.0893179933677	631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATCTAGGTGTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	194813670	194786103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813495
ENSMUSG00000016481.16_194786104_194813869_1	chr1	-	1468	10	NNC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	76.5724058217667	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATCTAGGTGTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	194813869	194786103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813672
ENSMUSG00000016481.16_194786104_194813869_2	chr1	-	1331	10	NIC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	121	junction_9	50.3432661280975	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATCTAGGTGTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	194813869	194786103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813809
ENSMUSG00000016481.16_194786104_194813869_3	chr1	-	1325	9	NNC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	86.6804476222868	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATCTAGGTGTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	194813869	194786103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_194786216_194789125_194789231_194793387_194793464_194796945_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813809
ENSMUSG00000016481.16_194811168_194813670_1	chr1	-	742	3	FSM	ENSMUSG00000016481.16	ENSMUST00000193719.2	3859	3	172	2945	-7	334	multi-exon	FALSE	canonical	3	104	junction_2	96	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGACTTTGTGGGAAAGAT	NA	False	NA	NA	False	ATTAAA	-17	NA	194813670	194811167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_194811555_194812137_194812318_194813495
ENSMUSG00000016481.16_194811168_194813869_1	chr1	-	941	3	FSM	ENSMUSG00000016481.16	ENSMUST00000193719.2	3859	3	-27	2945	0	334	multi-exon	FALSE	canonical	3	104	junction_2	96	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGACTTTGTGGGAAAGAT	NA	False	NA	NA	False	ATTAAA	-17	NA	194813869	194811167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_194811555_194812137_194812318_194813495
ENSMUSG00000016495.13_29326105_29339247_1	chr19	-	660	5	NIC	ENSMUSG00000016495.13	novel	1012	7	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	17.2825779327044	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAATCATGGCAGTATTC	NA	False	NA	-105	True	AATAAA	-15	NA	29339247	29326104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_29326406_29327759_29327870_29335716_29335804_29338216_29338328_29339196
ENSMUSG00000016495.13_29326105_29339247_3	chr19	-	790	6	NNC	ENSMUSG00000016495.13	novel	1012	7	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	21.3410402745508	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAATCATGGCAGTATTC	NA	False	NA	-105	True	AATAAA	-15	NA	29339247	29326104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_29326406_29327759_29327870_29328443_29328575_29335716_29335804_29338216_29338323_29339192
ENSMUSG00000016495.13_29326105_29339247_4	chr19	-	791	6	FSM	ENSMUSG00000016495.13	ENSMUST00000143467.8	1020	6	123	106	-23	0	multi-exon	FALSE	canonical	3	35	junction_3	10.1390334845093	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAATCATGGCAGTATTC	NA	False	NA	-105	True	AATAAA	-15	NA	29339247	29326104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_29326406_29327759_29327870_29328443_29328575_29335716_29335804_29338216_29338328_29339196
ENSMUSG00000016495.13_29326105_29339370_1	chr19	-	914	6	FSM	ENSMUSG00000016495.13	ENSMUST00000143467.8	1020	6	0	106	0	0	multi-exon	FALSE	canonical	3	35	junction_3	10.1390334845093	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAATCATGGCAGTATTC	NA	False	NA	-105	True	AATAAA	-15	NA	29339370	29326104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_29326406_29327759_29327870_29328443_29328575_29335716_29335804_29338216_29338328_29339196
ENSMUSG00000016503.19_146885515_146892417_1	chr5	+	1238	9	NNC	ENSMUSG00000016503.19	novel	1298	9	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	170.603341116169	271	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCGACTCTTTGCTGTTT	NA	False	NA	16	True	ATTAAA	-16	NA	146885514	146892417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933_146891994_146892182
ENSMUSG00000016510.12_146885515_146892417_1	chr5	-	1243	9	NIC	ENSMUSG00000016510.12	novel	2131	5	NA	NA	8136	2868	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGGAGACTTTGAACTTC	4679	False	NA	NA	False	NA	NA	NA	146892417	146885514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933_146891994_146892177
ENSMUSG00000016510.12_146891741_146900597_1	chr5	-	1560	4	FSM	ENSMUSG00000016510.12	ENSMUST00000110566.2	1134	4	10	-436	0	-411	multi-exon	FALSE	canonical	3	88	junction_3	16.996731711976	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTTGTGTAGTGAATCTG	NA	False	NA	-20	True	AATAAA	-15	NA	146900597	146891740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900532
ENSMUSG00000016510.12_146891741_146900597_2	chr5	-	1571	4	FSM	ENSMUSG00000016510.12	ENSMUST00000066675.10	4927	4	-2	3358	0	-411	multi-exon	FALSE	canonical	3	65	junction_3	27.6445694888204	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTTGTGTAGTGAATCTG	NA	False	NA	-20	True	AATAAA	-15	NA	146900597	146891740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900521
ENSMUSG00000016534.16_37510529_37545291_1	chrX	-	1419	9	FSM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	40	2145	0	-2145	multi-exon	FALSE	canonical	3	893	junction_3	45.9604109533411	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTATTGAAGGTACATTAG	NA	False	NA	NA	False	AATAAA	-25	NA	37545291	37510528	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
ENSMUSG00000016541.11_85220446_85347413_1	chr15	+	1930	12	NNC	ENSMUSG00000016541.11	novel	1937	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	371.622842664552	2971	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGACCCTTGATTGGA	NA	False	NA	25	True	AATAAA	-33	NA	85220445	85347413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_85220775_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
ENSMUSG00000016541.11_85220558_85347413_1	chr15	+	1817	12	NNC	ENSMUSG00000016541.11	novel	1937	12	NA	NA	112	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	371.622842664552	2800	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGACCCTTGATTGGA	NA	False	NA	25	True	AATAAA	-33	NA	85220557	85347413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_85220782_85243662_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
ENSMUSG00000016541.11_85220558_85347413_2	chr15	+	1825	12	FSM	ENSMUSG00000016541.11	ENSMUST00000163242.3	1937	12	112	0	112	0	multi-exon	FALSE	canonical	3	1134	junction_3	91.244743989915	3048	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGACCCTTGATTGGA	NA	False	NA	25	True	AATAAA	-33	NA	85220557	85347413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
ENSMUSG00000016541.11_85220609_85347413_1	chr15	+	1767	12	NNC	ENSMUSG00000016541.11	novel	1937	12	NA	NA	163	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	371.622842664552	934	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGACCCTTGATTGGA	NA	False	NA	25	True	AATAAA	-33	NA	85220608	85347413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_85220775_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
ENSMUSG00000016554.10_77843198_77855013_1	chr15	-	1898	15	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	452.831821058619	4969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCGTCCTGTGCTCCCGTT	2745	False	NA	-11	True	AATAAA	-24	NA	77855013	77843197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846127_77846635_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
ENSMUSG00000016554.10_77843198_77855013_2	chr15	-	1893	15	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	447.556175929061	4139	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCGTCCTGTGCTCCCGTT	2745	False	NA	-11	True	AATAAA	-24	NA	77855013	77843197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_77843317_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
ENSMUSG00000016554.10_77843198_77855013_3	chr15	-	1894	15	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	452.696343691703	4086	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCGTCCTGTGCTCCCGTT	2745	False	NA	-11	True	AATAAA	-24	NA	77855013	77843197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851635_77852375_77852422_77852656_77852790_77854882
ENSMUSG00000016559.15_115913117_115915330_1	chr11	-	1663	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	0	330	0	-330	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	48248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	-15	True	AATAAA	-14	NA	115915330	115913116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
ENSMUSG00000016619.11_84807612_84824210_1	chr15	+	1812	8	FSM	ENSMUSG00000016619.11	ENSMUST00000165443.4	4766	8	0	2954	0	2	multi-exon	FALSE	canonical	3	399	junction_4	38.703477668983	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTTCTCCCTTCCTAAGA	NA	False	NA	25	True	AATAAA	-19	NA	84807611	84824210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_84807852_84811568_84811648_84813572_84813657_84817735_84817920_84819064_84819725_84821687_84821770_84822558_84822678_84823846
ENSMUSG00000016637.8_78043663_78058307_1	chr15	-	895	6	NIC	ENSMUSG00000016637.8	novel	1013	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	105.289315697273	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACGGCTTCTGTTCTTAGT	NA	False	NA	-2	True	AATAAA	-14	NA	78058307	78043662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_78043909_78048389_78048500_78050173_78050234_78051269_78051330_78052112_78052193_78057968
ENSMUSG00000016757.12_83459843_83479358_1	chr15	-	3222	14	FSM	ENSMUSG00000016757.12	ENSMUST00000016901.5	3774	14	0	552	0	-523	multi-exon	FALSE	canonical	3	239	junction_9	15.0977093760069	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTCTTTTCTCTTTGGG	4671	False	NA	-1	True	AGTAAA	-17	NA	83479358	83459842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_83461250_83461947_83462087_83462835_83462905_83464268_83464351_83464695_83464848_83465868_83465981_83466245_83466441_83466546_83466664_83468856_83468934_83471051_83471186_83471274_83471435_83472703_83472903_83475579_83475750_83479149
ENSMUSG00000016757.12_83460930_83479358_1	chr15	-	2135	14	FSM	ENSMUSG00000016757.12	ENSMUST00000016901.5	3774	14	0	1639	0	-1610	multi-exon	FALSE	canonical	3	239	junction_9	15.0977093760069	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGTGTTCCTGCTCCATAT	4671	False	NA	1	True	NA	NA	NA	83479358	83460929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_83461250_83461947_83462087_83462835_83462905_83464268_83464351_83464695_83464848_83465868_83465981_83466245_83466441_83466546_83466664_83468856_83468934_83471051_83471186_83471274_83471435_83472703_83472903_83475579_83475750_83479149
ENSMUSG00000016831.13_52517022_52524829_1	chr14	+	737	5	ISM	ENSMUSG00000016831.13	ENSMUST00000022766.8	5350	10	419	9029	0	25	internal_fragment	FALSE	canonical	3	458	junction_4	49.6890329952194	146	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGACCCAAATGAACCTCA	NA	False	NA	NA	False	AAAAAG	-28	NA	52517021	52524829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757
ENSMUSG00000016831.13_52517022_52530928_1	chr14	+	2156	9	ISM	ENSMUSG00000016831.13	ENSMUST00000022766.8	5350	10	419	2930	0	1114	3prime_fragment	FALSE	canonical	3	458	junction_4	39.6389959509572	282	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCCGGCCAAAAGCCTGTT	NA	False	NA	NA	False	NA	NA	NA	52517021	52530928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529676_52529976_52530141_52530657
ENSMUSG00000016831.13_52517022_52531969_1	chr14	+	3197	9	ISM	ENSMUSG00000016831.13	ENSMUST00000022766.8	5350	10	419	1889	0	-1889	3prime_fragment	FALSE	canonical	3	458	junction_4	39.6389959509572	519	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTTTAAATGTGCATTC	NA	False	NA	8	True	AGTAAA	-20	NA	52517021	52531969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529676_52529976_52530141_52530657
ENSMUSG00000016831.13_52532314_52542444_1	chr14	+	1868	11	NIC	ENSMUSG00000016831.13	novel	5350	10	NA	NA	9123	8586	intron_retention	FALSE	non_canonical	0	0	junction_1	0	157	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGCTCCCAGCGCGGACT	NA	False	NA	NA	False	NA	NA	NA	52532313	52542444	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_52532551_52533530_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542344
ENSMUSG00000016831.13_52532314_52542581_1	chr14	+	2005	11	NIC	ENSMUSG00000016831.13	novel	5350	10	NA	NA	9123	8723	intron_retention	FALSE	non_canonical	0	0	junction_1	0	172	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGGCGAACCAGCCGGAC	NA	False	NA	NA	False	NA	NA	NA	52532313	52542581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_52532551_52533530_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542344
ENSMUSG00000016833.15_100946615_100952337_1	chr5	+	516	6	FSM	ENSMUSG00000016833.15	ENSMUST00000016977.15	638	6	122	0	2	0	multi-exon	FALSE	canonical	3	1615	junction_5	130.796636042369	15849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTGGAAATGTCTTTC	NA	False	NA	51	True	AATAAA	-33	NA	100946614	100952337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100950918_100950977_100951835_100951896_100952197
ENSMUSG00000016921.15_162775412_162777130_1	chr2	+	1151	4	ISM	ENSMUSG00000016921.15	ENSMUST00000193611.6	2897	5	1964	-2	1831	2	3prime_fragment	FALSE	canonical	3	867	junction_3	54.1376845541891	241	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGATTGCCTTATTGAATA	NA	False	NA	16	True	AATAAA	-14	NA	162775411	162777130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_162775471_162775573_162775783_162776147_162776232_162776331
ENSMUSG00000016921.15_162775412_162777268_1	chr2	+	1289	4	ISM	ENSMUSG00000016921.15	ENSMUST00000193611.6	2897	5	1964	-140	1831	140	3prime_fragment	FALSE	canonical	3	867	junction_3	54.1376845541891	402	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTATTTTGTGCTGTTAAT	NA	False	NA	5	True	AATAAA	-18	NA	162775411	162777268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_162775471_162775573_162775783_162776147_162776232_162776331
ENSMUSG00000016946.7_24266708_24278287_1	chr17	-	2025	4	ISM	ENSMUSG00000016946.7	ENSMUST00000017090.6	2443	6	14172	0	1004	0	3prime_fragment	FALSE	canonical	3	983	junction_3	72.8209371601938	313	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGCAACTGTGAATATC	NA	False	NA	-22	True	AATAAA	-20	NA	24278287	24266707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_24268419_24274898_24275025_24276714_24276811_24278195
ENSMUSG00000016946.7_24268303_24278287_1	chr17	-	430	4	ISM	ENSMUSG00000016946.7	ENSMUST00000017090.6	2443	6	14172	1595	1004	-1595	3prime_fragment	FALSE	canonical	3	983	junction_3	72.8209371601938	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTTTTGATCATTTCTC	NA	False	NA	NA	False	GATAAA	-41	NA	24278287	24268302	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_24268419_24274898_24275025_24276714_24276811_24278195
ENSMUSG00000017009.4_164267394_164285106_1	chr2	-	1231	5	FSM	ENSMUSG00000017009.4	ENSMUST00000017153.4	2458	5	0	1227	0	426	multi-exon	FALSE	canonical	3	26	junction_3	6.36396103067893	896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGGGAGGGCGGGGTGAA	NA	False	NA	NA	False	TTTAAA	-10	NA	164285106	164267393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_164268158_164270812_164271009_164271599_164271647_164273106_164273234_164285009
ENSMUSG00000017009.4_164267652_164285106_1	chr2	-	973	5	FSM	ENSMUSG00000017009.4	ENSMUST00000017153.4	2458	5	0	1485	0	168	multi-exon	FALSE	canonical	3	26	junction_3	6.36396103067893	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCCTGTAGTAAACATGTC	NA	False	NA	NA	False	AATATA	-12	NA	164285106	164267651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_164268158_164270812_164271009_164271599_164271647_164273106_164273234_164285009
ENSMUSG00000017057.10_35375763_35433088_1	chrX	+	1888	11	FSM	ENSMUSG00000017057.10	ENSMUST00000033418.8	3712	11	0	1824	0	-1824	multi-exon	FALSE	canonical	3	38	junction_2	4.27083130081252	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCATTTTCCTCTGCTTTG	NA	False	NA	NA	False	ATTAAA	-25	NA	35375762	35433088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_35375929_35390297_35390438_35394256_35394396_35396616_35396738_35404865_35405051_35407663_35407816_35412302_35412351_35412631_35412765_35415670_35415768_35419195_35419281_35432466
ENSMUSG00000017144.9_51021392_51039122_1	chr2	-	1885	5	FSM	ENSMUSG00000017144.9	ENSMUST00000017288.9	2828	5	1	942	0	455	multi-exon	FALSE	canonical	3	429	junction_2	50.2792203599061	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTGATAGCGTGATTAAA	NA	False	NA	NA	False	AATAAA	-15	NA	51039122	51021391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_51022558_51024094_51024230_51027147_51027258_51038235_51038324_51038736
ENSMUSG00000017146.13_101430449_101442705_1	chr11	-	622	3	ISM	ENSMUSG00000017146.13	ENSMUST00000142086.3	1917	9	76	14116	0	-7540	5prime_fragment	FALSE	canonical	3	286	junction_2	14	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACATAGCCATGTTGTACA	NA	False	NA	NA	False	NA	NA	NA	101442705	101430448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_101430861_101439840_101439940_101442594
ENSMUSG00000017176.18_100320179_100331899_1	chr11	-	1499	8	FSM	ENSMUSG00000017176.18	ENSMUST00000107397.2	1348	8	-145	-6	0	0	multi-exon	FALSE	canonical	3	485	junction_1	42.2470866040561	2742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACGCGTCTTTAATCCC	NA	False	NA	-2	True	ATTAAA	-19	NA	100331899	100320178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654
ENSMUSG00000017176.18_100320179_100331899_2	chr11	-	1381	9	NNC	ENSMUSG00000017176.18	novel	1399	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	176.686471963758	2608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACGCGTCTTTAATCCC	NA	False	NA	-2	True	ATTAAA	-19	NA	100331899	100320178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325605_100326976_100327067_100330865_100330913_100331010_100331081_100331654_100331754_100331869
ENSMUSG00000017176.18_100330379_100331899_1	chr11	-	628	5	NIC	ENSMUSG00000017176.18	novel	598	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	208.6975982133	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGGGTTTATTTTTATTA	NA	False	NA	NA	False	AGTAAA	-17	NA	100331899	100330378	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_100330761_100330865_100330913_100331010_100331081_100331654_100331754_100331869
ENSMUSG00000017188.4_101168794_101169777_1	chr11	-	723	2	FSM	ENSMUSG00000017188.4	ENSMUST00000017332.4	886	2	163	0	-8	0	multi-exon	FALSE	canonical	3	1870	junction_1	0	2255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGCTAGTGTGTGGGGG	5665	False	NA	-5	True	AATAAA	-20	NA	101169777	101168793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_101169279_101169539
ENSMUSG00000017188.4_101168794_101169777_2	chr11	-	722	2	NNC	ENSMUSG00000017188.4	novel	886	2	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2187	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGCTAGTGTGTGGGGG	5665	False	NA	-5	True	AATAAA	-20	NA	101169777	101168793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_101169279_101169540
ENSMUSG00000017188.4_101169164_101169777_1	chr11	-	353	2	FSM	ENSMUSG00000017188.4	ENSMUST00000017332.4	886	2	163	370	-8	0	multi-exon	FALSE	canonical	3	1870	junction_1	0	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGGACCATCTTCAAACT	5665	False	NA	NA	False	NA	NA	NA	101169777	101169163	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_101169279_101169539
ENSMUSG00000017204.5_98564290_98567478_1	chr11	+	810	3	ISM	ENSMUSG00000017204.5	ENSMUST00000017348.3	2726	12	9113	1056	9113	-1056	3prime_fragment	FALSE	canonical	2	2	junction_1	0.5	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTACTTTGAGTCACTTC	NA	False	NA	NA	False	NA	NA	NA	98564289	98567478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_98564547_98566698_98566773_98566999
ENSMUSG00000017221.15_98573391_98586805_1	chr11	+	2131	12	NNC	ENSMUSG00000017221.15	novel	2148	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	345.092369955716	10581	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTGTGCACGGTGTCAG	NA	False	NA	16	True	AATAAA	-14	NA	98573390	98586805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_98573764_98576307_98576499_98576759_98576898_98578509_98578641_98581288_98581480_98581741_98581846_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
ENSMUSG00000017286.16_76111467_76134501_1	chr11	-	2253	9	FSM	ENSMUSG00000017286.16	ENSMUST00000017430.12	1434	9	50	-869	0	869	multi-exon	FALSE	canonical	3	653	junction_6	49.1602926659311	4966	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCTGTGATCATGGTG	NA	False	NA	NA	False	NA	NA	NA	76134501	76111466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_76112858_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
ENSMUSG00000017286.16_76112620_76134501_2	chr11	-	1094	9	NNC	ENSMUSG00000017286.16	novel	1434	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	249.232321338947	665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGGCAAATTCCTACTGT	NA	False	NA	-13	True	AATGAA	-20	NA	76134501	76112619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_76112848_76123843_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
ENSMUSG00000017299.14_164596059_164610140_1	chr2	+	904	10	ISM	ENSMUSG00000017299.14	ENSMUST00000017443.14	1664	13	8156	387	0	-387	3prime_fragment	FALSE	canonical	3	563	junction_7	42.9653894589357	1420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGGTAGTGAGCCTGCTA	NA	False	NA	15	True	AATAAA	-1	NA	164596058	164610140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171_164601218_164604988_164605048_164605140_164605202_164607080_164607153_164609626_164609683_164609782
ENSMUSG00000017299.14_164596059_164610140_2	chr2	+	897	10	NNC	ENSMUSG00000017299.14	novel	1664	13	NA	NA	0	-387	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	201.811793510687	709	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGGTAGTGAGCCTGCTA	NA	False	NA	15	True	AATAAA	-1	NA	164596058	164610140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164596129_164599309_164599379_164599602_164599657_164599927_164599980_164601171_164601218_164604988_164605048_164605140_164605202_164607080_164607153_164609626_164609683_164609782
ENSMUSG00000017299.14_164596059_164610140_3	chr2	+	738	7	NIC	ENSMUSG00000017299.14	novel	1664	13	NA	NA	0	-387	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	244.13708580768	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGGTAGTGAGCCTGCTA	NA	False	NA	15	True	AATAAA	-1	NA	164596058	164610140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164607080_164607153_164609626_164609683_164609782
ENSMUSG00000017390.16_78213994_78217586_1	chr11	+	1365	8	NIC	ENSMUSG00000017390.16	novel	2786	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_7	55.6079571460702	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCGCTCTGTCTGTCTGT	NA	False	NA	18	True	AATAAA	-18	NA	78213993	78217586	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_78214049_78215215_78215340_78215429_78215642_78215734_78215790_78215874_78216036_78216154_78216239_78216467_78216643_78217087
ENSMUSG00000017390.16_78213994_78217586_2	chr11	+	1565	9	FSM	ENSMUSG00000017390.16	ENSMUST00000017534.15	2786	9	200	1021	0	0	multi-exon	FALSE	canonical	3	130	junction_5	18.6547581061776	611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCGCTCTGTCTGTCTGT	NA	False	NA	18	True	AATAAA	-18	NA	78213993	78217586	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78214049_78215215_78215340_78215429_78215642_78215734_78215790_78215874_78216036_78216154_78216239_78216467_78216643_78216760_78216961_78217087
ENSMUSG00000017404.13_97917783_97921318_1	chr11	+	706	6	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	6163.94327034245	12104	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917782	97921318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920330_97920600_97920712_97921096
ENSMUSG00000017404.13_97917783_97921318_10	chr11	+	699	6	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6422.31984254911	19806	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917782	97921318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97917817_97918667_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
ENSMUSG00000017404.13_97917783_97921318_11	chr11	+	711	6	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	6525.83719073653	40562	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917782	97921318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921103
ENSMUSG00000017404.13_97917783_97921318_12	chr11	+	709	6	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	1994	junction_1	5636.22526164453	34445	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917782	97921318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97917817_97918657_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
ENSMUSG00000017404.13_97917783_97921318_13	chr11	+	754	6	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	1515	junction_1	5824.77595792319	68725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917782	97921318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97917853_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
ENSMUSG00000017404.13_97917783_97921318_2	chr11	+	705	6	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	6525.83719073653	14010	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917782	97921318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921109
ENSMUSG00000017404.13_97917783_97921318_3	chr11	+	713	6	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6298.77421725847	29732	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917782	97921318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97917817_97918648_97918756_97919176_97919295_97920220_97920342_97920600_97920712_97921096
ENSMUSG00000017404.13_97917783_97921318_4	chr11	+	1550	5	ISM	ENSMUSG00000017404.13	ENSMUST00000092425.11	737	6	247	0	0	0	3prime_fragment	FALSE	canonical	3	13947	junction_4	1138.33373291843	20488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917782	97921318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
ENSMUSG00000017404.13_97917783_97921318_5	chr11	+	708	6	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6965.31246678855	11225	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917782	97921318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97917817_97918648_97918756_97919176_97919295_97920225_97920342_97920600_97920712_97921096
ENSMUSG00000017404.13_97917783_97921318_6	chr11	+	709	6	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6298.77421725847	23504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917782	97921318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97917817_97918648_97918760_97919184_97919295_97920220_97920342_97920600_97920712_97921096
ENSMUSG00000017404.13_97917783_97921318_7	chr11	+	709	6	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6163.94327034245	22943	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917782	97921318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920609_97920712_97921096
ENSMUSG00000017404.13_97917783_97921318_8	chr11	+	700	6	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	6525.83719073653	10977	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917782	97921318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920694_97921096
ENSMUSG00000017404.13_97917783_97921318_9	chr11	+	697	6	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	6525.83719073653	4319	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917782	97921318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921117
ENSMUSG00000017404.13_97917915_97921318_1	chr11	+	909	6	NNC	ENSMUSG00000017404.13	novel	737	6	NA	NA	132	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	6419.95020541437	20078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917914	97921318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97918140_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
ENSMUSG00000017421.19_80274157_80286584_1	chr11	+	1727	11	FSM	ENSMUSG00000017421.19	ENSMUST00000017567.14	2245	11	28	490	0	192	multi-exon	FALSE	canonical	3	695	junction_8	108.208317610062	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTATGGCTTCTTTTTC	NA	False	NA	22	True	AATAAA	-30	NA	80274156	80286584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215
ENSMUSG00000017421.19_80274157_80286584_2	chr11	+	1820	12	FSM	ENSMUSG00000017421.19	ENSMUST00000053740.15	1562	12	-66	-192	0	192	multi-exon	FALSE	canonical	3	261	junction_9	283.951136525079	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTATGGCTTCTTTTTC	NA	False	NA	22	True	AATAAA	-30	NA	80274156	80286584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
ENSMUSG00000017421.19_80274157_80286968_1	chr11	+	2111	11	FSM	ENSMUSG00000017421.19	ENSMUST00000017567.14	2245	11	28	106	0	-103	multi-exon	FALSE	canonical	3	695	junction_8	108.208317610062	1549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGCCTTTTTATTCATA	NA	False	NA	24	True	AATAAA	-13	NA	80274156	80286968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215
ENSMUSG00000017421.19_80274157_80286968_2	chr11	+	2099	11	NNC	ENSMUSG00000017421.19	novel	2245	11	NA	NA	0	-103	intron_retention	FALSE	canonical	3	172	junction_7	258.380823591845	1198	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGCCTTTTTATTCATA	NA	False	NA	24	True	AATAAA	-13	NA	80274156	80286968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282216_80282660_80282819_80285111_80285358_80285927_80286088_80286215
ENSMUSG00000017421.19_80274157_80286968_3	chr11	+	2204	12	FSM	ENSMUSG00000017421.19	ENSMUST00000053740.15	1562	12	-66	-576	0	-103	multi-exon	FALSE	canonical	3	261	junction_9	283.951136525079	1147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGCCTTTTTATTCATA	NA	False	NA	24	True	AATAAA	-13	NA	80274156	80286968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
ENSMUSG00000017421.19_80274157_80287074_1	chr11	+	2310	12	FSM	ENSMUSG00000017421.19	ENSMUST00000053740.15	1562	12	-66	-682	0	0	multi-exon	FALSE	canonical	3	261	junction_9	283.951136525079	1494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGATACATGATTGAAT	NA	False	NA	130	True	AATAAA	-18	NA	80274156	80287074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
ENSMUSG00000017428.17_80319449_80362792_1	chr11	+	1563	14	NNC	ENSMUSG00000017428.17	novel	2848	14	NA	NA	0	57	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	282.687231770233	7341	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAAAGCTGTGCTCTCTGC	NA	False	NA	13	True	NA	NA	NA	80319448	80362792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353441_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80362535
ENSMUSG00000017428.17_80319449_80362792_2	chr11	+	1568	14	FSM	ENSMUSG00000017428.17	ENSMUST00000017572.14	2848	14	-2	1282	0	57	multi-exon	FALSE	canonical	3	918	junction_5	68.6804624122448	7558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAAAGCTGTGCTCTCTGC	NA	False	NA	13	True	NA	NA	NA	80319448	80362792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80362535
ENSMUSG00000017428.17_80362289_80362792_1	chr11	+	389	2	ISM	ENSMUSG00000017428.17	ENSMUST00000148895.9	796	8	15095	-91	8848	57	3prime_fragment	FALSE	canonical	3	930	junction_1	0	1178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAAAGCTGTGCTCTCTGC	NA	False	NA	13	True	NA	NA	NA	80362288	80362792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_80362421_80362535
ENSMUSG00000017453.5_77771441_77784624_1	chr11	-	1749	8	NNC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	298	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	95.9908584082838	1116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCGGTGGTCTTTATTT	NA	False	NA	-2	True	AATAAA	-22	NA	77784624	77771440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_77772130_77772326_77772403_77772943_77773103_77773442_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
ENSMUSG00000017453.5_77771441_77784624_2	chr11	-	1700	8	FSM	ENSMUSG00000017453.5	ENSMUST00000017597.5	1998	8	298	0	298	0	multi-exon	FALSE	canonical	3	213	junction_3	30.9654184996286	1156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCGGTGGTCTTTATTT	NA	False	NA	-2	True	AATAAA	-22	NA	77784624	77771440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_77772081_77772326_77772403_77772943_77773103_77773442_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
ENSMUSG00000017453.5_77771441_77784624_3	chr11	-	2040	7	NIC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	298	0	intron_retention	FALSE	canonical	3	232	junction_1	25.5304828696121	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCGGTGGTCTTTATTT	NA	False	NA	-2	True	AATAAA	-22	NA	77784624	77771440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_77772081_77772326_77772403_77772943_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
ENSMUSG00000017453.5_77771441_77784675_1	chr11	-	1709	8	NNC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	247	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	94.5053718373852	1069	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCGGTGGTCTTTATTT	NA	False	NA	-2	True	AATAAA	-22	NA	77784675	77771440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_77772081_77772326_77772361_77772943_77773103_77773442_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
ENSMUSG00000017677.12_79130214_79145498_1	chr11	-	2637	10	NIC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_4	142.650916403006	902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTACATTGCCGATATTTC	974	False	NA	-24	True	ATTAAA	-12	NA	79145498	79130213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79134225_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
ENSMUSG00000017677.12_79130214_79145498_2	chr11	-	2356	10	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	150.950895457782	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTACATTGCCGATATTTC	974	False	NA	-24	True	ATTAAA	-12	NA	79145498	79130213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_79130463_79130567_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
ENSMUSG00000017677.12_79130214_79145498_4	chr11	-	3880	9	NIC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	0	intron_retention	FALSE	canonical	3	190	junction_4	93.9730679503442	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTACATTGCCGATATTTC	974	False	NA	-24	True	ATTAAA	-12	NA	79145498	79130213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
ENSMUSG00000017677.12_79130214_79145498_5	chr11	-	2625	10	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_4	144.381524757699	966	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTACATTGCCGATATTTC	974	False	NA	-24	True	ATTAAA	-12	NA	79145498	79130213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79134237_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
ENSMUSG00000017677.12_79141191_79145498_1	chr11	-	753	3	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	-6257	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	188	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAAAATCTGGGTGGCC	974	False	NA	NA	False	NA	NA	NA	79145498	79141190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_79141384_79141735_79141976_79145178
ENSMUSG00000017686.18_80099910_80157577_1	chr11	+	2952	19	FSM	ENSMUSG00000017686.18	ENSMUST00000092857.13	3687	19	0	735	0	0	multi-exon	FALSE	canonical	3	336	junction_18	65.0695971182841	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATTTTTTCCATCATTGA	NA	False	NA	18	True	AATAAA	-29	NA	80099909	80157577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80156567
ENSMUSG00000017697.4_163568734_163592159_1	chr2	-	1458	12	FSM	ENSMUSG00000017697.4	ENSMUST00000017841.4	1688	12	0	230	0	-230	multi-exon	FALSE	canonical	3	45	junction_1	12.1526108476007	603	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGCAGCACATGGTGAAT	NA	False	NA	-6	True	AATAAA	-18	NA	163592159	163568733	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_163568969_163569463_163569564_163570036_163570167_163571931_163571997_163572217_163572320_163572400_163572473_163573024_163573153_163574176_163574293_163574773_163574918_163577268_163577392_163580082_163580145_163591978
ENSMUSG00000017707.10_163466582_163487045_1	chr2	-	2287	10	FSM	ENSMUSG00000017707.10	ENSMUST00000017851.4	3683	10	6	1390	0	-1390	multi-exon	FALSE	canonical	3	366	junction_6	56.7393868903371	2335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTTTGTTTGTGTATTT	NA	False	NA	-10	True	ATTAAA	-15	NA	163487045	163466581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
ENSMUSG00000017707.10_163466690_163487045_1	chr2	-	2179	10	FSM	ENSMUSG00000017707.10	ENSMUST00000017851.4	3683	10	6	1498	0	-1498	multi-exon	FALSE	canonical	3	366	junction_6	56.7393868903371	1978	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGCAGAGTTATGTAATG	NA	False	NA	-10	True	ATTAAA	-22	NA	163487045	163466689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
ENSMUSG00000017715.12_117877711_117896437_1	chr11	+	1108	7	ISM	ENSMUSG00000017715.12	ENSMUST00000017859.10	2197	10	0	18400	0	-18314	5prime_fragment	FALSE	canonical	3	280	junction_4	13.7719521734091	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGAGCGCGGAGCTAA	NA	False	NA	NA	False	NA	NA	NA	117877710	117896437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_117877840_117888266_117888457_117891024_117891103_117892441_117892542_117893176_117893367_117894166_117894346_117896195
ENSMUSG00000017715.12_117894306_117896437_1	chr11	+	282	2	ISM	ENSMUSG00000017715.12	ENSMUST00000100185.10	1953	8	2685	18314	2685	-18314	internal_fragment	FALSE	canonical	3	294	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGAGCGCGGAGCTAA	NA	False	NA	NA	False	NA	NA	NA	117894305	117896437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_117894346_117896195
ENSMUSG00000017715.12_117896416_117914837_1	chr11	+	1039	3	NNC	ENSMUSG00000017715.12	novel	2863	10	NA	NA	4795	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117896415	117914837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_117896718_117910432_117910563_117914230
ENSMUSG00000017715.12_117898891_117914837_1	chr11	+	950	4	NNC	ENSMUSG00000017715.12	novel	3113	3	NA	NA	-4278	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	169.36023408371	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117898890	117914837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_117898955_117905399_117905549_117910432_117910563_117914230
ENSMUSG00000017715.12_117899165_117914837_1	chr11	+	952	4	NNC	ENSMUSG00000017715.12	novel	3113	3	NA	NA	-4004	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	173.005459130309	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117899164	117914837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_117899231_117905399_117905549_117910432_117910563_117914230
ENSMUSG00000017716.16_117740145_117746291_1	chr11	+	612	4	FSM	ENSMUSG00000017716.16	ENSMUST00000081387.11	947	4	68	267	0	-267	multi-exon	FALSE	canonical	3	1683	junction_1	206.515536138729	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTACCTCTCTTTGGTT	NA	False	NA	NA	False	TTTAAA	-1	NA	117740144	117746291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_117740288_117740579_117740690_117743488_117743607_117746050
ENSMUSG00000017716.16_117740145_117746569_1	chr11	+	780	3	NIC	ENSMUSG00000017716.16	novel	3334	3	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	60	junction_1	950.5	3456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTCTTGGAGAAATGG	NA	False	NA	40	True	AATAAA	-29	NA	117740144	117746569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_117740288_117743488_117743607_117746050
ENSMUSG00000017721.16_164339455_164350221_1	chr2	+	2322	13	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_12	51.0299476342623	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTTGCTTCCTTCCTAA	5127	False	NA	7	True	AATAAA	-16	NA	164339454	164350221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349543_164349767
ENSMUSG00000017723.12_164404499_164410430_1	chr2	+	549	3	FSM	ENSMUSG00000017723.12	ENSMUST00000109344.9	429	3	-120	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	240.5	1840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	113	False	NA	26	True	AATAAA	-32	NA	164404498	164410430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_164404725_164407711_164407859_164410254
ENSMUSG00000017723.12_164404634_164410430_1	chr2	+	570	4	NIC	ENSMUSG00000017723.12	novel	849	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_1	229.843908386153	1615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	248	False	NA	26	True	AATAAA	-32	NA	164404633	164410430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_164404725_164405976_164406133_164407711_164407859_164410254
ENSMUSG00000017723.12_164404634_164410430_2	chr2	+	756	6	NNC	ENSMUSG00000017723.12	novel	849	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_4	216.583101833915	5559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	248	False	NA	26	True	AATAAA	-32	NA	164404633	164410430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164404725_164405227_164405372_164405976_164406133_164407711_164407859_164409269_164409312_164410254
ENSMUSG00000017723.12_164404634_164410430_3	chr2	+	714	5	FSM	ENSMUSG00000017723.12	ENSMUST00000017867.10	849	5	135	0	0	0	multi-exon	FALSE	canonical	3	478	junction_3	30.4251129825347	6173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	248	False	NA	26	True	AATAAA	-32	NA	164404633	164410430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_164404725_164405227_164405372_164405976_164406133_164407711_164407859_164410254
ENSMUSG00000017724.15_101660568_101664488_1	chr11	-	1322	6	ISM	ENSMUSG00000017724.15	ENSMUST00000164750.8	2336	13	11648	0	-1481	0	3prime_fragment	FALSE	canonical	3	16	junction_2	2.71293199325011	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCTCTTTGCTTCCAT	NA	False	NA	-1	True	AATAAA	-24	NA	101664488	101660567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434
ENSMUSG00000017754.14_164675727_164681504_1	chr2	-	1819	15	NIC	ENSMUSG00000017754.14	novel	2226	15	NA	NA	17212	5711	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGTCATGTGTAGCTCT	NA	False	NA	NA	False	NA	NA	NA	164681504	164675726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_164675771_164675949_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ENSMUSG00000017754.14_164681438_164698462_1	chr2	-	1547	14	NNC	ENSMUSG00000017754.14	novel	2226	15	NA	NA	254	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_13	100.554910078168	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTCTCTAGCTCTG	NA	False	NA	-1	True	NA	NA	NA	164698462	164681437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698385
ENSMUSG00000017760.17_164675727_164681504_1	chr2	+	1902	15	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	0	-435	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	269.468751738055	1322	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	18	True	ATTAAA	-18	NA	164675726	164681504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164675854_164675949_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ENSMUSG00000017760.17_164675727_164681504_2	chr2	+	1782	14	NIC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	0	-435	combination_of_known_junctions	FALSE	canonical	3	77	junction_1	258.285906443723	219	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	18	True	ATTAAA	-18	NA	164675726	164681504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_164675913_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ENSMUSG00000017760.17_164675727_164681504_3	chr2	+	1998	14	ISM	ENSMUSG00000017760.17	ENSMUST00000103093.10	2534	15	934	435	0	-435	3prime_fragment	FALSE	canonical	3	937	junction_10	54.6384566651142	1354	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	18	True	ATTAAA	-18	NA	164675726	164681504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ENSMUSG00000017760.17_164675727_164681504_4	chr2	+	1813	15	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	0	-435	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	272.62244955249	1291	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	18	True	ATTAAA	-18	NA	164675726	164681504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164675771_164675949_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679411_164679996_164680073_164680560_164680651_164680764_164680870_164681070
ENSMUSG00000017760.17_164681438_164698421_1	chr2	+	1572	14	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	2336	15469	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	419	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGGTCCAAGCTACAAT	NA	False	NA	NA	False	NA	NA	NA	164681437	164698421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698319
ENSMUSG00000017760.17_164681438_164699561_1	chr2	+	1745	16	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	2336	16609	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1365	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGGTAGCGCGGGTCCAG	NA	False	NA	NA	False	NA	NA	NA	164681437	164699561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696179_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503
ENSMUSG00000017760.17_164681438_164699561_2	chr2	+	1805	16	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	2336	16609	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1630	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGGTAGCGCGGGTCCAG	NA	False	NA	NA	False	NA	NA	NA	164681437	164699561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699437
ENSMUSG00000017760.17_164681438_164699561_3	chr2	+	1734	16	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	2336	16609	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1473	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGGTAGCGCGGGTCCAG	NA	False	NA	NA	False	NA	NA	NA	164681437	164699561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698719_164698806_164698918_164699503
ENSMUSG00000017776.16_75583295_75591637_2	chr11	+	361	2	ISM	ENSMUSG00000017776.16	ENSMUST00000093115.4	965	3	13158	-22	12927	22	3prime_fragment	FALSE	canonical	3	19	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATACCGTTCTTTTTGAGT	6162	False	NA	NA	False	TTTAAA	-7	NA	75583294	75591637	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_75583389_75591370
ENSMUSG00000017778.15_86192935_86194914_1	chr13	-	431	3	FSM	ENSMUSG00000017778.15	ENSMUST00000131011.2	540	3	109	0	-21	0	multi-exon	FALSE	canonical	3	10515	junction_1	2196	132250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGCCTCGTCTCTGCA	NA	False	NA	-14	True	AATAAA	-16	NA	86194914	86192934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_86193028_86193845_86193989_86194719
ENSMUSG00000017781.18_75489058_75517132_1	chr11	+	920	9	NNC	ENSMUSG00000017781.18	novel	1665	12	NA	NA	10073	0	intron_retention	FALSE	canonical	0	0	junction_2	223.14649756382	170	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTGATCCTCTAAGATAC	1916	False	NA	22	True	TATAAA	-16	NA	75489057	75517132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_75489155_75494214_75494311_75499930_75500006_75503045_75503130_75510065_75510144_75510281_75510393_75511079_75511203_75516290_75516357_75516942
ENSMUSG00000017781.18_75489060_75517556_1	chr11	+	1342	9	NNC	ENSMUSG00000017781.18	novel	1665	12	NA	NA	10075	0	intron_retention	FALSE	canonical	0	0	junction_2	223.14649756382	504	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCATCTCTGGTTAATAT	1918	False	NA	11	True	AATAAA	-18	NA	75489059	75517556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_75489155_75494214_75494311_75499930_75500006_75503045_75503130_75510065_75510144_75510281_75510393_75511079_75511203_75516290_75516357_75516942
ENSMUSG00000017801.16_100978130_100982344_1	chr11	+	1104	8	NNC	ENSMUSG00000017801.16	novel	1826	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	91.1912097446562	361	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTTTGCCTCTGCTTGGTC	8250	False	NA	6	True	NA	NA	NA	100978129	100982344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_100978188_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
ENSMUSG00000017801.16_100978130_100982344_2	chr11	+	1110	8	FSM	ENSMUSG00000017801.16	ENSMUST00000107302.8	1826	8	27	689	0	0	multi-exon	FALSE	canonical	0	0	junction_1	91.1912097446562	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTTTGCCTCTGCTTGGTC	8250	False	NA	6	True	NA	NA	NA	100978129	100982344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_100978194_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
ENSMUSG00000017801.16_100978130_100983033_1	chr11	+	1793	8	NNC	ENSMUSG00000017801.16	novel	1826	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	91.1912097446562	764	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTTAAGTCCTTGT	8250	False	NA	18	True	AATAAA	-22	NA	100978129	100983033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_100978188_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
ENSMUSG00000017801.16_100982983_100986236_1	chr11	+	923	8	NNC	ENSMUSG00000017801.16	novel	1826	8	NA	NA	2495	3203	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	645	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCGGTTGCTCCGGGAAAC	NA	False	NA	NA	False	NA	NA	NA	100982982	100986236	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_100983283_100983357_100983418_100983549_100983596_100983688_100983835_100984506_100984619_100985761_100985852_100985983_100986085_100986168
ENSMUSG00000017801.16_100982983_100986236_2	chr11	+	924	8	NNC	ENSMUSG00000017801.16	novel	1826	8	NA	NA	2495	3203	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	793	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCGGTTGCTCCGGGAAAC	NA	False	NA	NA	False	NA	NA	NA	100982982	100986236	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985845_100985983_100986085_100986168
ENSMUSG00000017801.16_100982983_100986236_3	chr11	+	924	8	NNC	ENSMUSG00000017801.16	novel	1826	8	NA	NA	2495	3203	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	533	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCGGTTGCTCCGGGAAAC	NA	False	NA	NA	False	NA	NA	NA	100982982	100986236	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_100983283_100983357_100983411_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983_100986085_100986168
ENSMUSG00000017831.9_53786509_53814708_1	chr17	+	2119	6	FSM	ENSMUSG00000017831.9	ENSMUST00000017975.7	2366	6	247	0	194	0	multi-exon	FALSE	canonical	3	761	junction_1	72.5131712173726	511	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGAGTTTTCTCTGTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	53786508	53814708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_53786637_53790848_53791104_53804554_53804707_53805415_53805539_53807403_53807498_53813341
ENSMUSG00000017837.13_100513702_100517243_1	chr11	+	907	4	FSM	ENSMUSG00000017837.13	ENSMUST00000017981.10	2097	4	0	1190	0	1	multi-exon	FALSE	canonical	3	328	junction_1	10.0332779621949	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGGCCCTCCCTTGACC	NA	False	NA	NA	False	NA	NA	NA	100513701	100517243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_100513835_100515017_100515126_100515768_100516011_100516819
ENSMUSG00000017837.13_100513702_100518433_1	chr11	+	2005	5	NIC	ENSMUSG00000017837.13	novel	2097	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_3	123.71413621733	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCCGTCCCCTACCCCT	NA	False	NA	17	True	AATAAA	-24	NA	100513701	100518433	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_100513835_100515017_100515126_100515768_100515843_100515934_100516011_100516819
ENSMUSG00000017843.15_110450404_110537347_1	chr12	+	1688	12	NNC	ENSMUSG00000017843.15	novel	956	8	NA	NA	-1768	2	at_least_one_novel_splicesite	TRUE	canonical	3	32	junction_1	278.776903604784	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCTCTTGTATAAGTACT	3152	False	NA	15	True	AATAAA	-20	NA	110450403	110537347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_110450715_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
ENSMUSG00000017843.15_110452293_110537347_1	chr12	+	1471	12	FSM	ENSMUSG00000017843.15	ENSMUST00000221715.2	2367	12	121	775	0	2	multi-exon	FALSE	canonical	3	738	junction_1	90.3704039902189	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCTCTTGTATAAGTACT	5041	False	NA	15	True	AATAAA	-20	NA	110452292	110537347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
ENSMUSG00000017843.15_110534221_110537347_1	chr12	+	389	3	ISM	ENSMUSG00000017843.15	ENSMUST00000221715.2	2367	12	82049	775	81928	2	3prime_fragment	FALSE	canonical	3	966	junction_2	39	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCTCTTGTATAAGTACT	NA	False	NA	15	True	AATAAA	-20	NA	110534220	110537347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_110534290_110535387_110535490_110537129
ENSMUSG00000017858.13_162859411_162875483_1	chr2	+	1080	9	ISM	ENSMUSG00000017858.13	ENSMUST00000018002.13	2248	13	137	12578	0	2293	5prime_fragment	FALSE	canonical	3	222	junction_1	43.5026938821034	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAGTTGGAAGAAATTAGC	NA	False	NA	NA	False	NA	NA	NA	162859410	162875483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_162859454_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154
ENSMUSG00000017858.13_162859411_162887820_1	chr2	+	1740	12	NIC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	0	-241	combination_of_known_splicesites	FALSE	canonical	3	25	junction_3	106.160567612002	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCTGGAACATGATATTG	NA	False	NA	15	True	AATAAA	-23	NA	162859410	162887820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_162859454_162864294_162864420_162865269_162865358_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017858.13_162859411_162887820_2	chr2	+	1993	13	NIC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	0	-241	combination_of_known_junctions	FALSE	canonical	3	47	junction_1	92.6614207148201	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCTGGAACATGATATTG	NA	False	NA	15	True	AATAAA	-23	NA	162859410	162887820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_162859577_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017858.13_162859411_162888061_1	chr2	+	2234	13	NIC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_1	92.6614207148201	1578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162859410	162888061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_162859577_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017858.13_162859411_162888061_2	chr2	+	1981	12	NIC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_3	106.160567612002	1026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162859410	162888061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_162859454_162864294_162864420_162865269_162865358_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017858.13_162873953_162887820_1	chr2	+	1322	6	NNC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	9590	-241	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	144.162963343572	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCTGGAACATGATATTG	NA	False	NA	15	True	AATAAA	-23	NA	162873952	162887820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_162874156_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017858.13_162873953_162888061_1	chr2	+	1563	6	NNC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	9590	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	144.162963343572	750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162873952	162888061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_162874156_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017858.13_162874201_162887813_1	chr2	+	1247	6	NNC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	9838	-248	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	153.088993725872	107	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGGCTCATCTGGAACAT	NA	False	NA	8	True	AATAAA	-16	NA	162874200	162887813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_162874336_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUSG00000017969.14_167045114_167049624_1	chr2	-	705	4	NNC	ENSMUSG00000017969.14	novel	2107	10	NA	NA	712	-287	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	37.8505834389203	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGCTTCCAAATCGGGC	7307	False	NA	-31	True	AATAAA	-22	NA	167049624	167045113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_167045389_167048653_167048806_167049101_167049284_167049528
ENSMUSG00000017969.14_167045114_167063280_1	chr2	-	1112	6	ISM	ENSMUSG00000017969.14	ENSMUST00000018113.8	2107	10	19244	287	-12944	-287	3prime_fragment	FALSE	canonical	3	46	junction_5	14.8404851672713	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGCTTCCAAATCGGGC	NA	False	NA	-31	True	AATAAA	-22	NA	167063280	167045113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167056727_167056910_167063128
ENSMUSG00000017969.14_167045114_167063282_1	chr2	-	932	5	NIC	ENSMUSG00000017969.14	novel	2107	10	NA	NA	-12946	-287	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	34.8164831653055	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGCTTCCAAATCGGGC	NA	False	NA	-31	True	AATAAA	-22	NA	167063282	167045113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167063128
ENSMUSG00000017969.14_167045114_167082509_1	chr2	-	1805	10	FSM	ENSMUSG00000017969.14	ENSMUST00000018113.8	2107	10	15	287	0	-287	multi-exon	FALSE	canonical	3	9	junction_8	29.1890390386528	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGCTTCCAAATCGGGC	5262	False	NA	-31	True	AATAAA	-22	NA	167082509	167045113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167056727_167056910_167063128_167063281_167065904_167066049_167067195_167067375_167069381_167069506_167082263
ENSMUSG00000017999.17_166857230_166876867_1	chr2	+	2597	21	FSM	ENSMUSG00000017999.17	ENSMUST00000018143.16	2714	21	117	0	0	0	multi-exon	FALSE	canonical	3	666	junction_12	71.8993045863449	2258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCTGTTGTCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	166857229	166876867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876465_166876558
ENSMUSG00000017999.17_166873554_166876867_1	chr2	+	705	6	ISM	ENSMUSG00000017999.17	ENSMUST00000018143.16	2714	21	16441	0	-2213	0	3prime_fragment	FALSE	canonical	3	777	junction_1	62.6399233716006	1443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCTGTTGTCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	166873553	166876867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876465_166876558
ENSMUSG00000018012.12_120612840_120614795_1	chr11	+	1121	5	FSM	ENSMUSG00000018012.12	ENSMUST00000134322.2	717	5	0	-404	0	0	multi-exon	FALSE	canonical	3	54	junction_2	3.80788655293195	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCGCTGTCTGCCC	4342	False	NA	14	True	AATAAA	-14	NA	120612839	120614795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120613129_120613334_120613453_120613631_120613695_120614006_120614167_120614304
ENSMUSG00000018012.12_120613041_120614795_1	chr11	+	920	5	FSM	ENSMUSG00000018012.12	ENSMUST00000134322.2	717	5	201	-404	201	0	multi-exon	FALSE	canonical	3	54	junction_2	3.80788655293195	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCGCTGTCTGCCC	4543	False	NA	14	True	AATAAA	-14	NA	120613040	120614795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120613129_120613334_120613453_120613631_120613695_120614006_120614167_120614304
ENSMUSG00000018040.10_82984490_83000872_1	chr15	-	1263	11	Fusion	ENSMUSG00000090964.2_ENSMUSG00000018040.10	novel	4363	7	NA	NA	945	1783	multi-exon	FALSE	non_canonical	0	0	junction_1	0	477	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCAGAAGCTCACGCCCC	4106	False	NA	NA	False	NA	NA	NA	83000872	82984489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr15_-_82984549_82985844_82985995_82986072_82986187_82986499_82986542_82987134_82987210_82988509_82988623_82989811_82989892_82996410_82996446_82998557_82998641_82999767_82999865_83000457
ENSMUSG00000018040.10_83000049_83006952_1	chr15	-	1869	8	NNC	ENSMUSG00000018040.10	novel	4363	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	321.200871729826	5295	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTGTCTCTCCTGAGCT	NA	False	NA	NA	False	AATAAA	-13	NA	83006952	83000048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_83000330_83000355_83001173_83001749_83001946_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
ENSMUSG00000018040.10_83000049_83006952_2	chr15	-	1872	8	NNC	ENSMUSG00000018040.10	novel	4363	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	832	junction_4	68.5907710814729	5643	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTGTCTCTCCTGAGCT	NA	False	NA	NA	False	AATAAA	-13	NA	83006952	83000048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_83000330_83000355_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
ENSMUSG00000018040.10_83000049_83006952_3	chr15	-	1870	8	NNC	ENSMUSG00000018040.10	novel	4363	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	323.560863908263	1514	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTGTCTCTCCTGAGCT	NA	False	NA	NA	False	AATAAA	-13	NA	83006952	83000048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_83000335_83000362_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
ENSMUSG00000018040.10_83000049_83006952_4	chr15	-	1871	8	NNC	ENSMUSG00000018040.10	novel	4363	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	323.560863908263	2405	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTGTCTCTCCTGAGCT	NA	False	NA	NA	False	AATAAA	-13	NA	83006952	83000048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_83000334_83000360_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
ENSMUSG00000018040.10_83000049_83006952_5	chr15	-	1869	8	NNC	ENSMUSG00000018040.10	novel	4363	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	308.297828439333	5001	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTGTCTCTCCTGAGCT	NA	False	NA	NA	False	AATAAA	-13	NA	83006952	83000048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_83000330_83000355_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004216_83006032_83006176_83006862
ENSMUSG00000018102.6_23868182_23876471_1	chr13	+	736	2	FSM	ENSMUSG00000018102.6	ENSMUST00000018246.6	1156	2	0	420	0	-420	multi-exon	FALSE	canonical	3	53	junction_1	0	1522	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGTCATGTTATATCACGT	183	False	NA	NA	False	NA	NA	NA	23868181	23876471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_23868605_23876158
ENSMUSG00000018160.16_98048285_98084110_1	chr11	-	2517	18	NIC	ENSMUSG00000018160.16	novel	8024	17	NA	NA	-8	294	combination_of_known_junctions	FALSE	canonical	3	134	junction_1	37.2323667653306	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGCTGACCTTATTGCAG	NA	False	NA	-8	True	AATGAA	-15	NA	98084110	98048284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_98048961_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
ENSMUSG00000018160.16_98051316_98084110_1	chr11	-	2147	16	ISM	ENSMUSG00000018160.16	ENSMUST00000107545.9	8024	17	9	8335	-8	-2737	5prime_fragment	FALSE	canonical	3	176	junction_2	32.5798847279865	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTCACTGTTGCCTCCATA	NA	False	NA	NA	False	AATAAA	-18	NA	98084110	98051315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
ENSMUSG00000018171.10_86475519_86512133_1	chr11	-	1307	7	NNC	ENSMUSG00000018171.10	novel	2787	12	NA	NA	-19012	237	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_6	352.567093693605	817	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCCGTTTTCTTTAGT	NA	False	NA	0	True	TATAAA	-23	NA	86512133	86475518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498119_86502167_86502249_86511730_86511856_86512073
ENSMUSG00000018171.10_86475519_86574662_1	chr11	-	1959	12	FSM	ENSMUSG00000018171.10	ENSMUST00000018315.10	2787	12	0	828	0	237	multi-exon	FALSE	canonical	3	615	junction_5	55.9317766244166	2500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCCGTTTTCTTTAGT	9872	False	NA	0	True	TATAAA	-23	NA	86574662	86475518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498119_86502167_86502249_86526000_86526133_86534323_86534492_86551948_86552060_86554308_86554400_86555479_86555616_86556602_86556705_86574565
ENSMUSG00000018189.13_143653043_143682545_1	chr1	+	1162	11	FSM	ENSMUSG00000018189.13	ENSMUST00000018333.13	1845	11	24	659	0	-134	multi-exon	FALSE	canonical	3	576	junction_8	227.497274708951	999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAATTGACTCAGTGCAC	NA	False	NA	11	True	AATAAA	-18	NA	143653042	143682545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143682421
ENSMUSG00000018189.13_143653043_143682679_1	chr1	+	1296	11	FSM	ENSMUSG00000018189.13	ENSMUST00000018333.13	1845	11	24	525	0	0	multi-exon	FALSE	canonical	3	576	junction_8	227.497274708951	6077	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCCATTCTTCAATTC	NA	False	NA	25	True	NA	NA	NA	143653042	143682679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143682421
ENSMUSG00000018189.13_143653043_143682679_2	chr1	+	1446	12	NIC	ENSMUSG00000018189.13	novel	1845	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	124	junction_10	458.199927492049	699	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCCATTCTTCAATTC	NA	False	NA	25	True	NA	NA	NA	143653042	143682679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143678665_143678816_143682421
ENSMUSG00000018189.13_143653059_143662410_1	chr1	+	763	3	FSM	ENSMUSG00000018189.13	ENSMUST00000189433.2	436	3	16	-343	0	343	multi-exon	FALSE	canonical	3	1300	junction_2	18.5	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCAAAACCCAAAAAACAAAG	NA	False	NA	NA	False	NA	NA	NA	143653058	143662410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_143653215_143659703_143659768_143661867
ENSMUSG00000018189.13_143653059_143682679_1	chr1	+	1280	11	FSM	ENSMUSG00000018189.13	ENSMUST00000018333.13	1845	11	40	525	0	0	multi-exon	FALSE	canonical	3	576	junction_8	227.497274708951	5680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCCATTCTTCAATTC	NA	False	NA	25	True	NA	NA	NA	143653058	143682679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143682421
ENSMUSG00000018196.19_143615348_143622514_1	chr1	+	659	4	FSM	ENSMUSG00000018196.19	ENSMUST00000185362.7	3337	4	53	2625	0	0	multi-exon	FALSE	canonical	3	459	junction_1	59.84981202978	6528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCGATTGGCCAGTTTT	NA	False	NA	31	True	AATAAA	-18	NA	143615347	143622514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_143615497_143617385_143617450_143620784_143620962_143622245
ENSMUSG00000018196.19_143615384_143622426_1	chr1	+	535	4	FSM	ENSMUSG00000018196.19	ENSMUST00000185362.7	3337	4	89	2713	0	2	multi-exon	FALSE	canonical	3	459	junction_1	59.84981202978	650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGACTTGAGGCTGTTT	NA	False	NA	-57	True	AGTAAA	-21	NA	143615383	143622426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_143615497_143617385_143617450_143620784_143620962_143622245
ENSMUSG00000018209.16_163916058_163994140_1	chr2	+	1928	11	FSM	ENSMUSG00000018209.16	ENSMUST00000018353.14	5232	11	0	3304	0	-3304	multi-exon	FALSE	canonical	3	214	junction_9	12.953763931769	251	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTGGTGGTGTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	163916057	163994140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_163916168_163921432_163921514_163925549_163925679_163928414_163928530_163930760_163930926_163938658_163938827_163940358_163940497_163941616_163941746_163942329_163942517_163959888_163960047_163993592
ENSMUSG00000018239.10_53215506_53223306_1	chr11	+	445	4	FSM	ENSMUSG00000018239.10	ENSMUST00000018383.10	1267	4	0	822	0	0	multi-exon	FALSE	canonical	3	238	junction_3	30.2691628926573	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCCTCCTCCTCCTCGGA	NA	False	NA	NA	False	NA	NA	NA	53215505	53223306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_53215569_53218095_53218255_53221513_53221559_53223128
ENSMUSG00000018239.10_53215506_53224128_1	chr11	+	1391	5	NIC	ENSMUSG00000018239.10	novel	1267	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	136.466799991793	1053	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGATGTAAGTTTCAAGT	NA	False	NA	14	True	TATAAA	-27	NA	53215505	53224128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_53215569_53218095_53218255_53221513_53221559_53222474_53222599_53223128
ENSMUSG00000018239.10_53215506_53224128_2	chr11	+	1262	4	NNC	ENSMUSG00000018239.10	novel	1267	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	130.876532146396	1150	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGATGTAAGTTTCAAGT	NA	False	NA	14	True	TATAAA	-27	NA	53215505	53224128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_53215569_53218100_53218255_53221513_53221559_53223128
ENSMUSG00000018239.10_53215506_53224128_3	chr11	+	1222	3	NIC	ENSMUSG00000018239.10	novel	1267	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_2	118	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGATGTAAGTTTCAAGT	NA	False	NA	14	True	TATAAA	-27	NA	53215505	53224128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_53215569_53218095_53218255_53223128
ENSMUSG00000018239.10_53215506_53224128_4	chr11	+	1322	5	NNC	ENSMUSG00000018239.10	novel	1267	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	135.234980681775	1213	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGATGTAAGTTTCAAGT	NA	False	NA	14	True	TATAAA	-27	NA	53215505	53224128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_53215569_53218095_53218255_53221513_53221559_53222474_53222530_53223128
ENSMUSG00000018287.13_70554597_70560120_1	chr11	-	1007	7	NIC	ENSMUSG00000018287.13	novel	1159	7	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	296.921239089127	5493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGTGGATACTAGTCC	NA	False	NA	-9	True	AATAAA	-33	NA	70560120	70554596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_70555047_70555145_70555303_70555403_70555494_70555608_70555694_70555813_70555873_70556122_70556191_70560022
ENSMUSG00000018287.13_70554597_70560120_2	chr11	-	1079	7	NNC	ENSMUSG00000018287.13	novel	1159	7	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_5	366.341825803898	5669	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGTGGATACTAGTCC	NA	False	NA	-9	True	AATAAA	-33	NA	70560120	70554596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_70555047_70555145_70555303_70555403_70555494_70555608_70555694_70555813_70555903_70556075_70556186_70560022
ENSMUSG00000018293.5_70542676_70545304_1	chr11	-	695	3	FSM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	166	0	120	0	multi-exon	FALSE	canonical	3	9692	junction_2	172	3203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGACCTGTGTTGGTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	70545304	70542675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70543048_70543612_70543806_70545174
ENSMUSG00000018293.5_70542676_70545470_1	chr11	-	859	3	NNC	ENSMUSG00000018293.5	novel	861	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4846	22759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGACCTGTGTTGGTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	70545470	70542675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_70543042_70543608_70543806_70545174
ENSMUSG00000018326.10_163837123_163858733_1	chr2	+	995	6	FSM	ENSMUSG00000018326.10	ENSMUST00000018470.10	3013	6	243	1775	243	1530	multi-exon	FALSE	canonical	3	1292	junction_3	139.446620611616	948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGACTTTCGATTTTTCA	NA	False	NA	7	True	GATAAA	-19	NA	163837122	163858733	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_163837286_163853521_163853825_163855925_163856050_163857150_163857315_163858022_163858119_163858588
ENSMUSG00000018339.13_54793752_54801203_1	chr11	+	1440	5	FSM	ENSMUSG00000018339.13	ENSMUST00000082430.11	1594	5	154	0	0	0	multi-exon	FALSE	canonical	3	86	junction_4	9.98436277385793	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAGCCTACTTGGAATTT	NA	False	NA	9	True	AGTAAA	-16	NA	54793751	54801203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_54793879_54797952_54798107_54799366_54799485_54799865_54799966_54800262
ENSMUSG00000018340.14_54869934_54924241_1	chr11	-	2461	25	NNC	ENSMUSG00000018340.14	novel	2471	25	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	122.14460919564	1985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	-4	True	NA	NA	NA	54924241	54869933	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54882196_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
ENSMUSG00000018362.15_106879455_106890290_1	chr11	-	1956	11	NIC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	138	junction_10	946.562882221778	3233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTTTTCTTAATTGA	9743	False	NA	NA	False	AATAAA	-27	NA	106890290	106879454	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888141_106890184
ENSMUSG00000018372.14_106708705_106709682_1	chr11	+	497	3	ISM	ENSMUSG00000018372.14	ENSMUST00000124898.2	712	4	0	1074	0	3	5prime_fragment	FALSE	canonical	3	58	junction_1	6.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTACTGCTTTTGAATTTA	NA	False	NA	13	True	AATAAA	-15	NA	106708704	106709682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_106708807_106709021_106709094_106709359
ENSMUSG00000018381.16_95733062_95736560_1	chr11	-	492	4	NNC	ENSMUSG00000018381.16	novel	4006	8	NA	NA	-3258	-5159	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	82	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGGAGGGAAGGCAGAGC	NA	False	NA	NA	False	NA	NA	NA	95736560	95733061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_95733109_95734637_95734722_95735857_95735967_95736308
ENSMUSG00000018395.20_53458206_53477744_1	chr11	+	1359	9	ISM	ENSMUSG00000018395.20	ENSMUST00000057330.15	2290	17	0	14188	0	22	5prime_fragment	FALSE	canonical	3	61	junction_1	8.55496931613434	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAGAAGGGGTAAGTT	919	False	NA	NA	False	AAAAAG	-1	NA	53458205	53477744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661
ENSMUSG00000018411.18_104122310_104219275_1	chr11	+	1425	9	NIC	ENSMUSG00000018411.18	novel	5253	10	NA	NA	0	14	combination_of_known_splicesites	FALSE	canonical	3	21	junction_2	219.953652788491	1288	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGTAAAAACATGGCCAAA	NA	False	NA	19	True	AATAAA	-23	NA	104122309	104219275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_104122434_104173193_104173307_104185684_104185751_104193186_104193237_104197451_104197585_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_104200490_104219077_1	chr11	+	802	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8369	10	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	201.516128386787	117	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGAATGATCTGGCC	9487	False	NA	NA	False	NA	NA	NA	104200489	104219077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_104200551_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_104200490_104219275_1	chr11	+	1000	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8369	14	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	201.516128386787	1390	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGTAAAAACATGGCCAAA	9487	False	NA	19	True	AATAAA	-23	NA	104200489	104219275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_104200551_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_104200490_104219275_2	chr11	+	1147	6	NNC	ENSMUSG00000018411.18	novel	779	5	NA	NA	-8369	14	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_3	204.272954646473	1246	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGTAAAAACATGGCCAAA	9487	False	NA	19	True	AATAAA	-23	NA	104200489	104219275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_104200605_104201094_104201361_104208982_104209076_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_104200543_104219077_1	chr11	+	803	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8316	10	at_least_one_novel_splicesite	FALSE	canonical	3	288	junction_1	100.158312186258	191	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGAATGATCTGGCC	9540	False	NA	NA	False	NA	NA	NA	104200542	104219077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_104200605_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_104200543_104219275_1	chr11	+	1001	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8316	14	at_least_one_novel_splicesite	FALSE	canonical	3	288	junction_1	100.158312186258	1476	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGTAAAAACATGGCCAAA	9540	False	NA	19	True	AATAAA	-23	NA	104200542	104219275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_104200605_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_104200699_104219077_1	chr11	+	890	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8160	10	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	186.526640188473	130	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGAATGATCTGGCC	9696	False	NA	NA	False	NA	NA	NA	104200698	104219077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_104200848_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_104200699_104219275_1	chr11	+	1181	6	NNC	ENSMUSG00000018411.18	novel	779	5	NA	NA	-8160	14	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_3	222.439744650096	735	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGTAAAAACATGGCCAAA	9696	False	NA	19	True	AATAAA	-23	NA	104200698	104219275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_104200848_104201094_104201361_104208982_104209076_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018411.18_104200699_104219275_2	chr11	+	1088	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8160	14	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	186.526640188473	1368	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGTAAAAACATGGCCAAA	9696	False	NA	19	True	AATAAA	-23	NA	104200698	104219275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_104200848_104201094_104201361_104212176_104212259_104213253_104213367_104218797
ENSMUSG00000018415.15_60308413_60332914_1	chr11	+	769	6	FSM	ENSMUSG00000018415.15	ENSMUST00000070681.7	4283	6	325	3189	325	-3189	multi-exon	FALSE	canonical	3	383	junction_3	37.1408131305711	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTTTGCGAGGAAATTAT	NA	False	NA	NA	False	AATAAA	-19	NA	60308412	60332914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_60308671_60315599_60315660_60323158_60323267_60327173_60327276_60329268_60329400_60332804
ENSMUSG00000018415.15_60308421_60333616_1	chr11	+	1463	6	FSM	ENSMUSG00000018415.15	ENSMUST00000070681.7	4283	6	333	2487	333	-2487	multi-exon	FALSE	canonical	3	383	junction_3	37.1408131305711	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTATTTTTATGGTACCT	NA	False	NA	NA	False	AATAAA	-20	NA	60308420	60333616	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_60308671_60315599_60315660_60323158_60323267_60327173_60327276_60329268_60329400_60332804
ENSMUSG00000018425.19_86660575_86698431_1	chr11	-	2769	18	FSM	ENSMUSG00000018425.19	ENSMUST00000018569.14	3813	18	141	903	141	-903	multi-exon	FALSE	canonical	3	128	junction_4	18.4312056730034	375	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCAAGGCCTTCTTAT	8668	False	NA	-5	True	ATTAAA	-17	NA	86698431	86660574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_86661088_86661855_86662085_86662719_86662790_86664629_86664725_86666485_86666595_86667440_86667556_86675704_86675863_86676582_86676664_86679992_86680176_86680311_86680399_86683987_86684088_86688448_86688581_86689747_86689815_86690245_86690474_86691794_86691915_86695082_86695229_86697285_86697454_86698263
ENSMUSG00000018428.16_88721729_88755412_1	chr11	-	3647	11	FSM	ENSMUSG00000018428.16	ENSMUST00000018572.11	3758	11	0	111	0	-111	multi-exon	FALSE	canonical	3	816	junction_2	49.6891336209437	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTTGCAGTGGTGTTGA	NA	False	NA	-19	True	NA	NA	NA	88755412	88721728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
ENSMUSG00000018433.15_107057489_107080178_1	chr11	-	3069	18	FSM	ENSMUSG00000018433.15	ENSMUST00000106757.8	3098	18	29	0	0	0	multi-exon	FALSE	canonical	3	50	junction_5	109.451004980994	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATGAAAATGTCTCTC	1130	False	NA	NA	False	TATAAA	-12	NA	107080178	107057488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064228_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
ENSMUSG00000018433.15_107057753_107080178_1	chr11	-	2805	18	FSM	ENSMUSG00000018433.15	ENSMUST00000106757.8	3098	18	29	264	0	-264	multi-exon	FALSE	canonical	3	50	junction_5	109.451004980994	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCTGCAAAACATCTCTG	1130	False	NA	NA	False	NA	NA	NA	107080178	107057752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064228_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
ENSMUSG00000018433.15_107072635_107080178_1	chr11	-	689	6	ISM	ENSMUSG00000018433.15	ENSMUST00000106757.8	3098	18	29	15146	0	-3273	5prime_fragment	FALSE	canonical	3	283	junction_2	76.478493709016	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAAAATCTGTTAAACC	1130	False	NA	NA	False	AATACA	-18	NA	107080178	107072634	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
ENSMUSG00000018442.14_70900759_70910069_1	chr11	-	1115	7	FSM	ENSMUSG00000018442.14	ENSMUST00000143850.8	3666	7	60	2491	0	0	multi-exon	FALSE	canonical	3	526	junction_4	25.493463214453	1023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTGTATTTAAGCTTTCG	NA	False	NA	-9	True	AATAAA	-20	NA	70910069	70900758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70901253_70903935_70904027_70904268_70904465_70905375_70905470_70906552_70906627_70909137_70909204_70909969
ENSMUSG00000018442.14_70900759_70910069_2	chr11	-	1021	6	FSM	ENSMUSG00000018442.14	ENSMUST00000018586.6	629	6	26	-418	0	0	multi-exon	FALSE	canonical	2	7	junction_3	222.522268548566	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTGTATTTAAGCTTTCG	NA	False	NA	-9	True	AATAAA	-20	NA	70910069	70900758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70901253_70903935_70904027_70904268_70904465_70906552_70906627_70909137_70909204_70909969
ENSMUSG00000018446.9_70868674_70873466_1	chr11	-	1040	6	NNC	ENSMUSG00000018446.9	novel	1175	6	NA	NA	367	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	2089.26833125858	1179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAAGTTGAGGTTCTTT	NA	False	NA	-38	True	AATAAA	-20	NA	70873466	70868673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_70869071_70869253_70869377_70869514_70869611_70870835_70870930_70872995_70873147_70873287
ENSMUSG00000018446.9_70868674_70873833_1	chr11	-	517	2	NNC	ENSMUSG00000018446.9	novel	703	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	696	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAAGTTGAGGTTCTTT	NA	False	NA	-38	True	AATAAA	-20	NA	70873833	70868673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_70869071_70873713
ENSMUSG00000018449.13_70861312_70868628_1	chr11	+	543	5	NIC	ENSMUSG00000018449.13	novel	548	6	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	23	junction_4	157.733953225043	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGGTGTTCTGATGT	NA	False	NA	14	True	ATTAAA	-15	NA	70861311	70868628	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_70861414_70862589_70862761_70863840_70863902_70864894_70864959_70868483
ENSMUSG00000018449.13_70861312_70868628_2	chr11	+	479	4	FSM	ENSMUSG00000018449.13	ENSMUST00000169965.8	343	4	-21	-115	0	1	multi-exon	FALSE	canonical	3	26	junction_3	151.702193641211	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGGTGTTCTGATGT	NA	False	NA	14	True	ATTAAA	-15	NA	70861311	70868628	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70868483
ENSMUSG00000018449.13_70861312_70868628_3	chr11	+	684	6	FSM	ENSMUSG00000018449.13	ENSMUST00000171254.8	548	6	-21	-115	0	1	multi-exon	FALSE	canonical	3	39	junction_3	115.373480488369	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGGTGTTCTGATGT	NA	False	NA	14	True	ATTAAA	-15	NA	70861311	70868628	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864894_70864959_70865725_70865867_70868483
ENSMUSG00000018449.13_70861312_70868628_4	chr11	+	1563	6	NIC	ENSMUSG00000018449.13	novel	1100	7	NA	NA	0	1	intron_retention	FALSE	canonical	3	224	junction_4	52.6748516846512	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGGTGTTCTGATGT	NA	False	NA	14	True	ATTAAA	-15	NA	70861311	70868628	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70865867_70868483
ENSMUSG00000018449.13_70861312_70868755_1	chr11	+	606	4	FSM	ENSMUSG00000018449.13	ENSMUST00000169965.8	343	4	-21	-242	0	96	multi-exon	FALSE	canonical	3	26	junction_3	151.702193641211	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCCAAAGGAATAGCGAATG	NA	False	NA	141	True	AATAAA	-19	NA	70861311	70868755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70868483
ENSMUSG00000018449.13_70861312_70868755_2	chr11	+	670	5	NIC	ENSMUSG00000018449.13	novel	548	6	NA	NA	0	96	combination_of_known_junctions	FALSE	canonical	3	23	junction_4	157.733953225043	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCCAAAGGAATAGCGAATG	NA	False	NA	141	True	AATAAA	-19	NA	70861311	70868755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_70861414_70862589_70862761_70863840_70863902_70864894_70864959_70868483
ENSMUSG00000018449.13_70861312_70868755_3	chr11	+	811	6	FSM	ENSMUSG00000018449.13	ENSMUST00000171254.8	548	6	-21	-242	0	96	multi-exon	FALSE	canonical	3	39	junction_3	115.373480488369	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCCAAAGGAATAGCGAATG	NA	False	NA	141	True	AATAAA	-19	NA	70861311	70868755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864894_70864959_70865725_70865867_70868483
ENSMUSG00000018470.9_69222195_69223868_1	chr11	+	1278	3	ISM	ENSMUSG00000018470.9	ENSMUST00000134561.2	750	7	1045	-899	1045	0	3prime_fragment	FALSE	canonical	3	49	junction_1	1	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACCACGTCTGAAATTGCA	NA	False	NA	11	True	AATAAA	-20	NA	69222194	69223868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_69222407_69222561_69222651_69222891
ENSMUSG00000018474.19_69254850_69264535_1	chr11	-	438	3	NNC	ENSMUSG00000018474.19	novel	6066	39	NA	NA	-4303	-3300	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	6	134	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAGAAAAAAACAAAAAGGAG	NA	False	NA	NA	False	NA	NA	NA	69264535	69254849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_69254970_69255517_69255631_69264330
ENSMUSG00000018501.18_62349286_62404730_1	chr11	-	1661	7	NIC	ENSMUSG00000018501.18	novel	646	5	NA	NA	-55363	-38730	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	484	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGGTAAGTGGCACTGCG	6182	False	NA	NA	False	AAGAAA	-15	NA	62404730	62349285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403729
ENSMUSG00000018509.9_62415772_62429841_1	chr11	-	786	5	FSM	ENSMUSG00000018509.9	ENSMUST00000018653.8	1032	5	246	0	-12	0	multi-exon	FALSE	canonical	3	1369	junction_4	69.2639877569867	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACTATGACATATTTCT	8617	False	NA	-14	True	AATAAA	-19	NA	62429841	62415771	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_62416114_62418317_62418433_62424710_62424781_62427107_62427207_62429681
ENSMUSG00000018537.17_97580646_97590407_1	chr11	-	1613	10	ISM	ENSMUSG00000018537.17	ENSMUST00000103148.8	1438	11	60	0	0	0	intron_retention	FALSE	canonical	3	57	junction_9	50.8265022732564	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATATACATACTTATTT	NA	False	NA	8	True	NA	NA	NA	97590407	97580645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590031
ENSMUSG00000018537.17_97580646_97590467_1	chr11	-	1337	10	NNC	ENSMUSG00000018537.17	novel	1438	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	74.4830745543021	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATATACATACTTATTT	NA	False	NA	8	True	NA	NA	NA	97590467	97580645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582729_97582848_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590361
ENSMUSG00000018537.17_97580646_97590467_2	chr11	-	1343	10	FSM	ENSMUSG00000018537.17	ENSMUST00000169807.8	2347	10	7	997	0	0	multi-exon	FALSE	canonical	3	83	junction_9	43.2000800182158	892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATATACATACTTATTT	NA	False	NA	8	True	NA	NA	NA	97590467	97580645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590361
ENSMUSG00000018565.18_69859050_69871089_1	chr11	-	1106	8	NNC	ENSMUSG00000018565.18	novel	1454	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	201.064919965707	2517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTGGTAATGCTTAAACA	9889	False	NA	0	True	AATAAA	-30	NA	69871089	69859049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_69859359_69859916_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824_69870886_69871039
ENSMUSG00000018565.18_69859050_69871089_2	chr11	-	1187	8	NNC	ENSMUSG00000018565.18	novel	1454	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_4	185.270789133426	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTGGTAATGCTTAAACA	9889	False	NA	0	True	AATAAA	-30	NA	69871089	69859049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865787_69866087_69870655_69870737_69870824_69870886_69871039
ENSMUSG00000018565.18_69859050_69871089_3	chr11	-	1109	8	ISM	ENSMUSG00000018565.18	ENSMUST00000108594.8	1454	9	989	0	0	0	3prime_fragment	FALSE	canonical	3	471	junction_7	49.073455978081	3158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTGGTAATGCTTAAACA	9889	False	NA	0	True	AATAAA	-30	NA	69871089	69859049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824_69870886_69871039
ENSMUSG00000018565.18_69859050_69871349_1	chr11	-	1369	8	ISM	ENSMUSG00000018565.18	ENSMUST00000108594.8	1454	9	729	0	173	0	3prime_fragment	FALSE	canonical	3	471	junction_7	49.073455978081	3657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTGGTAATGCTTAAACA	9629	False	NA	0	True	AATAAA	-30	NA	69871349	69859049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824_69870886_69871039
ENSMUSG00000018567.15_69882465_69885777_1	chr11	+	849	4	NNC	ENSMUSG00000018567.15	novel	1351	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	424.221902101037	8595	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCCTGTGTCATTCCAC	5224	False	NA	16	True	AATAAA	-26	NA	69882464	69885777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_69882623_69883190_69883270_69883407_69883527_69885284
ENSMUSG00000018567.15_69882465_69885777_2	chr11	+	855	4	FSM	ENSMUSG00000018567.15	ENSMUST00000018711.15	1351	4	496	0	0	0	multi-exon	FALSE	canonical	3	795	junction_2	75.6350888587213	9359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCCTGTGTCATTCCAC	5224	False	NA	16	True	AATAAA	-26	NA	69882464	69885777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69882629_69883190_69883270_69883407_69883527_69885284
ENSMUSG00000018569.13_69856327_69858708_1	chr11	+	1227	4	FSM	ENSMUSG00000018569.13	ENSMUST00000018713.13	1335	4	105	3	105	0	multi-exon	FALSE	canonical	3	113	junction_1	5.71547606649408	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTCTTTCCAGGCCGCT	8848	False	NA	6	True	AATAAA	-16	NA	69856326	69858708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69856976_69857768_69857934_69858045_69858131_69858380
ENSMUSG00000018569.13_69856502_69858708_1	chr11	+	1052	4	FSM	ENSMUSG00000018569.13	ENSMUST00000018713.13	1335	4	280	3	280	0	multi-exon	FALSE	canonical	3	113	junction_1	5.71547606649408	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTCTTTCCAGGCCGCT	9023	False	NA	6	True	AATAAA	-16	NA	69856501	69858708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69856976_69857768_69857934_69858045_69858131_69858380
ENSMUSG00000018572.11_69886603_69890593_1	chr11	+	1563	5	FSM	ENSMUSG00000018572.11	ENSMUST00000101526.9	1706	5	-99	242	0	2	multi-exon	FALSE	canonical	3	83	junction_3	201.26273251648	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTCCCCTCATGTTTCTT	2317	False	NA	8	True	TATAAA	-18	NA	69886602	69890593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889327_69889959_69890063
ENSMUSG00000018572.11_69886603_69890835_1	chr11	+	1805	5	FSM	ENSMUSG00000018572.11	ENSMUST00000101526.9	1706	5	-99	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	201.26273251648	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCTTGTCCTATTTGG	2317	False	NA	16	True	AATAAA	-26	NA	69886602	69890835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889327_69889959_69890063
ENSMUSG00000018581.16_117807623_117842441_1	chr12	-	2584	10	NIC	ENSMUSG00000018581.16	novel	8260	52	NA	NA	37032	34094	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGCGCGGCCCCGAGCA	NA	False	NA	NA	False	NA	NA	NA	117842441	117807622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_117807693_117828764_117828900_117833740_117833873_117835818_117836173_117837455_117837528_117837630_117837802_117838418_117838542_117839309_117839460_117840640_117840778_117841201
ENSMUSG00000018593.14_55285326_55310726_1	chr11	-	2112	10	NNC	ENSMUSG00000018593.14	novel	2300	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	234.825440815771	1545	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGTCCCGGGTGATGG	3856	False	NA	-2	True	AATAAA	-22	NA	55310726	55285325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310621
ENSMUSG00000018593.14_55286247_55310726_1	chr11	-	1188	10	NNC	ENSMUSG00000018593.14	novel	1269	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	235.133899336705	728	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	3856	False	NA	NA	False	AATACA	-28	NA	55310726	55286246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310624
ENSMUSG00000018593.14_55286247_55310726_2	chr11	-	1196	10	FSM	ENSMUSG00000018593.14	ENSMUST00000108858.8	2115	10	-2	921	0	0	multi-exon	FALSE	canonical	3	134	junction_8	195.999685058956	1203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	3856	False	NA	NA	False	AATACA	-28	NA	55310726	55286246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298103_55300753_55300824_55310613
ENSMUSG00000018593.14_55286247_55310726_3	chr11	-	1179	10	NNC	ENSMUSG00000018593.14	novel	1269	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	235.133899336705	403	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	3856	False	NA	NA	False	AATACA	-28	NA	55310726	55286246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310633
ENSMUSG00000018593.14_55286247_55310726_4	chr11	-	1191	10	NNC	ENSMUSG00000018593.14	novel	1269	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	234.825440815771	604	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	3856	False	NA	NA	False	AATACA	-28	NA	55310726	55286246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310621
ENSMUSG00000018593.14_55286247_55314009_1	chr11	-	1514	12	NNC	ENSMUSG00000018593.14	novel	1269	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_9	307.494218181214	409	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	573	False	NA	NA	False	AATACA	-28	NA	55314009	55286246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310904_55311027_55312068_55312192_55313826
ENSMUSG00000018593.14_55286247_55314009_2	chr11	-	1574	13	NNC	ENSMUSG00000018593.14	novel	1304	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	324.063040420636	593	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	573	False	NA	NA	False	AATACA	-28	NA	55314009	55286246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310621_55310682_55310904_55311027_55312068_55312192_55313826
ENSMUSG00000018604.19_119818314_119822074_1	chr5	+	2196	2	ISM	ENSMUSG00000018604.19	ENSMUST00000018748.9	4856	8	9231	715	0	-552	3prime_fragment	FALSE	canonical	3	1076	junction_1	0	183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTTATGTAATTATTTGA	NA	False	NA	25	True	AATAAA	-25	NA	119818313	119822074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_119819131_119820695
ENSMUSG00000018651.15_83969746_84020426_1	chr11	-	2091	15	NIC	ENSMUSG00000018651.15	novel	2151	16	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_12	142.244346396026	1901	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGGTGTGTCAGATAT	NA	False	NA	-4	True	ATTAAA	-17	NA	84020426	83969745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84011907_84012015_84017813_84017922_84020362
ENSMUSG00000018659.13_96828651_96834605_1	chr11	-	1787	7	FSM	ENSMUSG00000018659.13	ENSMUST00000018803.12	1994	7	207	0	0	0	multi-exon	FALSE	canonical	3	181	junction_4	10.434983894999	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTTAACTTGATTCCAT	NA	False	NA	-2	True	AATAAA	-25	NA	96834605	96828650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_96829910_96830080_96830152_96830473_96830603_96830841_96830896_96831681_96831782_96833235_96833361_96834556
ENSMUSG00000018666.14_96679985_96698975_1	chr11	+	1141	6	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	188	junction_5	206.095705923243	2491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679984	96698975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441_96697591_96698628
ENSMUSG00000018666.14_96679985_96698975_2	chr11	+	2179	5	ISM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	0	491	0	0	5prime_fragment	FALSE	canonical	3	583	junction_4	77.1508263079534	2157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679984	96698975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441
ENSMUSG00000018666.14_96679985_96698975_3	chr11	+	1317	6	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_4	289.614916742905	2394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679984	96698975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693825_96697441_96697591_96698628
ENSMUSG00000018666.14_96679985_96698975_4	chr11	+	992	5	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_4	247.637335634189	1102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679984	96698975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96698628
ENSMUSG00000018666.14_96679985_96698975_5	chr11	+	1171	6	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	271.902188295718	2439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679984	96698975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441_96697621_96698628
ENSMUSG00000018669.15_96798642_96807240_1	chr11	-	1965	13	ISM	ENSMUSG00000018669.15	ENSMUST00000103152.11	2250	14	82	390	0	0	intron_retention	FALSE	canonical	3	982	junction_6	81.183776430735	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGGCTGGCAGTCACT	NA	False	NA	-41	True	AATAAA	-15	NA	96807240	96798641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976
ENSMUSG00000018677.10_102293971_102298313_1	chr11	-	1468	12	FSM	ENSMUSG00000018677.10	ENSMUST00000018821.9	1685	12	57	160	0	0	multi-exon	FALSE	canonical	3	4398	junction_3	174.765959202208	6362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGCTGTAGTGTC	7745	False	NA	95	True	NA	NA	NA	102298313	102293970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
ENSMUSG00000018677.10_102293971_102298313_2	chr11	-	1463	12	NNC	ENSMUSG00000018677.10	novel	1685	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_2	1375.97727253958	5970	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGCTGTAGTGTC	7745	False	NA	95	True	NA	NA	NA	102298313	102293970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_102294362_102294458_102294535_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
ENSMUSG00000018677.10_102293971_102298772_1	chr11	-	1539	12	NIC	ENSMUSG00000018677.10	novel	1685	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_11	1345.10671179491	2136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGCTGTAGTGTC	7286	False	NA	95	True	NA	NA	NA	102298772	102293970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298603
ENSMUSG00000018677.10_102294075_102298313_1	chr11	-	1364	12	FSM	ENSMUSG00000018677.10	ENSMUST00000018821.9	1685	12	57	264	0	-104	multi-exon	FALSE	canonical	3	4398	junction_3	174.765959202208	856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTGTATCCCCATGTT	7745	False	NA	-9	True	NA	NA	NA	102298313	102294074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
ENSMUSG00000018678.14_96851563_96868537_1	chr11	-	1444	3	ISM	ENSMUSG00000018678.14	ENSMUST00000107624.8	3055	7	0	7396	0	-6518	5prime_fragment	FALSE	canonical	3	58	junction_2	224.5	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATAACAGCAAGAATGAG	NA	False	NA	-11	True	AATAAA	-21	NA	96868537	96851562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_96852836_96854190_96854271_96868446
ENSMUSG00000018727.20_113588998_113599793_2	chr11	-	1192	7	ISM	ENSMUSG00000018727.20	ENSMUST00000173655.8	1213	8	553	0	0	0	3prime_fragment	FALSE	canonical	3	9	junction_4	70.2125740559022	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113599793	113588997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593336_113594096_113594193_113597242_113597396_113599629
ENSMUSG00000018727.20_113588998_113600352_1	chr11	-	1107	7	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_2	76.0453081319873	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600352	113588997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_113589493_113590661_113590740_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600212
ENSMUSG00000018727.20_113588998_113600352_2	chr11	-	1338	7	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	87.8116671569837	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600352	113588997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_113589493_113590661_113590809_113593238_113593336_113594096_113594193_113597242_113597396_113599629_113599681_113600053
ENSMUSG00000018727.20_113588998_113600352_3	chr11	-	1179	7	NIC	ENSMUSG00000018727.20	novel	1213	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	83.6381093361951	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600352	113588997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_113589493_113590661_113590809_113593238_113593336_113594096_113594193_113597242_113597396_113599629_113599681_113600212
ENSMUSG00000018727.20_113588998_113600466_1	chr11	-	1489	8	FSM	ENSMUSG00000018727.20	ENSMUST00000100248.6	1375	8	-114	0	-114	0	multi-exon	FALSE	canonical	3	47	junction_7	53.4469028903587	813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600466	113588997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600053
ENSMUSG00000018727.20_113588998_113600466_2	chr11	-	1293	7	NIC	ENSMUSG00000018727.20	novel	1213	8	NA	NA	-114	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	83.6381093361951	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600466	113588997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_113589493_113590661_113590809_113593238_113593336_113594096_113594193_113597242_113597396_113599629_113599681_113600212
ENSMUSG00000018727.20_113588998_113600466_3	chr11	-	1221	7	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-114	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_2	76.0453081319873	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600466	113588997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_113589493_113590661_113590740_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600212
ENSMUSG00000018727.20_113588998_113600844_1	chr11	-	1186	8	NNC	ENSMUSG00000018727.20	novel	1213	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_7	82.283234089606	156	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600844	113588997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593336_113594096_113594193_113597242_113597396_113599629_113599681_113600737
ENSMUSG00000018727.20_113588998_113600844_2	chr11	-	1276	8	NIC	ENSMUSG00000018727.20	novel	1213	8	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	75.7547061917877	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600844	113588997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593336_113594096_113594193_113597242_113597396_113599629_113599681_113600647
ENSMUSG00000018736.15_68712260_68743961_1	chr11	-	2417	10	NIC	ENSMUSG00000018736.15	novel	2382	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	74.7099742130432	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCGAGATTGCTTTATTT	NA	False	NA	NA	False	AATAAA	-24	NA	68743961	68712259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_68713492_68716995_68717031_68720740_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
ENSMUSG00000018740.15_68863310_68864669_1	chr11	+	663	4	NIC	ENSMUSG00000018740.15	novel	3648	5	NA	NA	4336	-522	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTTAAGATCTGGTCACG	9911	False	NA	NA	False	NA	NA	NA	68863309	68864669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_68863568_68863768_68863855_68864266_68864384_68864467
ENSMUSG00000018740.15_68863310_68864669_2	chr11	+	781	5	NNC	ENSMUSG00000018740.15	novel	3648	5	NA	NA	4336	-522	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2146	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTTAAGATCTGGTCACG	9911	False	NA	NA	False	NA	NA	NA	68863309	68864669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_68863568_68863807_68863855_68863942_68864100_68864266_68864384_68864467
ENSMUSG00000018740.15_68863310_68864669_3	chr11	+	800	5	NNC	ENSMUSG00000018740.15	novel	3648	5	NA	NA	4336	-522	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5068	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTTAAGATCTGGTCACG	9911	False	NA	NA	False	NA	NA	NA	68863309	68864669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_68863568_68863768_68863855_68863942_68864100_68864266_68864364_68864467
ENSMUSG00000018740.15_68863310_68864669_4	chr11	+	811	5	NNC	ENSMUSG00000018740.15	novel	3648	5	NA	NA	4336	-522	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10321	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTTAAGATCTGGTCACG	9911	False	NA	NA	False	NA	NA	NA	68863309	68864669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_68863568_68863768_68863846_68863942_68864100_68864266_68864384_68864467
ENSMUSG00000018740.15_68863310_68864669_5	chr11	+	904	4	NIC	ENSMUSG00000018740.15	novel	3648	5	NA	NA	4336	-522	intron_retention	FALSE	non_canonical	0	0	junction_1	0	7785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTTAAGATCTGGTCACG	9911	False	NA	NA	False	NA	NA	NA	68863309	68864669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_68863568_68863768_68863855_68863942_68864100_68864266
ENSMUSG00000018761.15_69547523_69549079_1	chr11	-	1180	4	FSM	ENSMUSG00000018761.15	ENSMUST00000127118.2	664	4	0	-516	0	0	multi-exon	FALSE	canonical	3	628	junction_2	21.5458168149231	825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTAGTGTGCATTCT	6912	False	NA	-4	True	AATAAA	-33	NA	69549079	69547522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761
ENSMUSG00000018761.15_69547523_69553413_1	chr11	-	1260	7	NNC	ENSMUSG00000018761.15	novel	1321	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	234.139144290076	1773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTAGTGTGCATTCT	6816	False	NA	-4	True	AATAAA	-33	NA	69553413	69547522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_69548145_69548241_69548357_69548550_69548670_69548761_69548848_69549391_69549525_69549636_69549703_69553294
ENSMUSG00000018761.15_69547523_69553413_3	chr11	-	1301	7	FSM	ENSMUSG00000018761.15	ENSMUST00000148242.8	971	7	0	-330	0	0	multi-exon	FALSE	canonical	3	35	junction_4	228.446018423026	2428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTAGTGTGCATTCT	6816	False	NA	-4	True	AATAAA	-33	NA	69553413	69547522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69548883_69549391_69549525_69549636_69549703_69553294
ENSMUSG00000018761.15_69547523_69553413_4	chr11	-	1180	6	FSM	ENSMUSG00000018761.15	ENSMUST00000125389.2	646	6	-69	-465	0	0	multi-exon	FALSE	canonical	3	53	junction_3	239.282761602252	950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTAGTGTGCATTCT	6816	False	NA	-4	True	AATAAA	-33	NA	69553413	69547522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69549391_69549525_69549636_69549703_69553294
ENSMUSG00000018765.6_69523816_69544123_1	chr11	+	890	4	NNC	ENSMUSG00000018765.6	novel	2951	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	556.054154037376	1588	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTCCCATGTTGCC	NA	False	NA	12	True	AATAAA	-15	NA	69523815	69544123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_69523854_69542839_69542900_69543035_69543134_69543429
ENSMUSG00000018765.6_69523816_69544123_2	chr11	+	922	4	NNC	ENSMUSG00000018765.6	novel	2951	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	556.054154037376	1592	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTCCCATGTTGCC	NA	False	NA	12	True	AATAAA	-15	NA	69523815	69544123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_69523886_69542839_69542900_69543035_69543134_69543429
ENSMUSG00000018765.6_69541758_69544123_1	chr11	+	1428	6	ISM	ENSMUSG00000018765.6	ENSMUST00000018909.4	2951	17	17942	0	-197	0	3prime_fragment	FALSE	canonical	3	1063	junction_4	117.696219140633	1734	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTCCCATGTTGCC	NA	False	NA	12	True	AATAAA	-15	NA	69541757	69544123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_69541899_69542064_69542263_69542348_69542550_69542803_69542900_69543035_69543134_69543429
ENSMUSG00000018770.10_73738791_73741643_1	chr2	-	677	5	NNC	ENSMUSG00000018770.10	novel	714	5	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1751.4433155258	33060	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	-21	True	ATTAAA	-15	NA	73741643	73738790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_73739052_73739527_73739712_73740207_73740286_73741298_73741405_73741595
ENSMUSG00000018774.14_69555039_69556979_1	chr11	-	676	4	NIC	ENSMUSG00000018774.14	novel	1230	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_3	62.8242699033494	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTTCTTTCCTCATTAA	3250	False	NA	-1	True	AATAAA	-19	NA	69556979	69555038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_69555331_69555576_69555748_69555860_69555940_69556845
ENSMUSG00000018820.14_42159033_42180157_1	chr19	+	2691	12	NIC	ENSMUSG00000018820.14	novel	2573	12	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	125	junction_1	17.7223769463382	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTGTCAGGTCTCCTA	NA	False	NA	8	True	AATAAA	-15	NA	42159032	42180157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_42159225_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174243_42174389_42177635_42177683_42177960_42178043_42178821
ENSMUSG00000018820.14_42159139_42180157_1	chr19	+	2585	12	NIC	ENSMUSG00000018820.14	novel	5611	13	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	125	junction_1	17.7223769463382	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTGTCAGGTCTCCTA	NA	False	NA	8	True	AATAAA	-15	NA	42159138	42180157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_42159225_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174243_42174389_42177635_42177683_42177960_42178043_42178821
ENSMUSG00000018821.4_42111842_42117440_1	chr19	-	856	3	FSM	ENSMUSG00000018821.4	ENSMUST00000018965.4	1044	3	58	130	-12	-130	multi-exon	FALSE	canonical	3	851	junction_1	12	3636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTCTCACCATCTCT	NA	False	NA	0	True	AATAAA	-18	NA	42117440	42111841	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_42112288_42113186_42113466_42117309
ENSMUSG00000018841.18_82768622_82781441_1	chr11	-	2330	10	FSM	ENSMUSG00000018841.18	ENSMUST00000018985.15	3426	10	-1	1097	-1	941	multi-exon	TRUE	canonical	3	107	junction_4	12.9099444873581	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGGTTGTTTATGGACCA	NA	False	NA	78	True	AATAAA	-17	NA	82781441	82768621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_82769850_82770010_82770179_82772426_82772498_82772596_82772688_82773712_82773809_82774318_82774454_82774708_82774791_82780517_82780637_82780795_82780858_82781163
ENSMUSG00000018841.18_82769279_82781441_1	chr11	-	1673	10	FSM	ENSMUSG00000018841.18	ENSMUST00000018985.15	3426	10	-1	1754	-1	284	multi-exon	FALSE	canonical	3	107	junction_4	12.9099444873581	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTTTATGCATATCCTAC	NA	False	NA	NA	False	NA	NA	NA	82781441	82769278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_82769850_82770010_82770179_82772426_82772498_82772596_82772688_82773712_82773809_82774318_82774454_82774708_82774791_82780517_82780637_82780795_82780858_82781163
ENSMUSG00000018841.18_82769458_82781415_1	chr11	-	1468	10	FSM	ENSMUSG00000018841.18	ENSMUST00000018985.15	3426	10	25	1933	0	105	multi-exon	FALSE	canonical	3	107	junction_4	12.9099444873581	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATAGTGTCCTGGTCCTG	NA	False	NA	-2	True	AAGAAA	-17	NA	82781415	82769457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_82769850_82770010_82770179_82772426_82772498_82772596_82772688_82773712_82773809_82774318_82774454_82774708_82774791_82780517_82780637_82780795_82780858_82781163
ENSMUSG00000018844.7_82791594_82799237_1	chr11	+	1719	13	NIC	ENSMUSG00000018844.7	novel	2166	4	NA	NA	8644	7610	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	558	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCGCCGGGCAACCTCCG	6219	False	NA	NA	False	NA	NA	NA	82791593	82799237	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_82791877_82792382_82792454_82792534_82792695_82793820_82793960_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
ENSMUSG00000018849.7_35729227_35733015_1	chr11	-	1402	3	ISM	ENSMUSG00000018849.7	ENSMUST00000018993.7	4531	23	138339	0	11366	0	3prime_fragment	FALSE	canonical	3	308	junction_1	4	350	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTTGTCATTTGTCCC	NA	False	NA	NA	False	AATAAA	-18	NA	35733015	35729226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_35730072_35731136_35731259_35732580
ENSMUSG00000018858.16_115294583_115301745_1	chr11	+	776	5	FSM	ENSMUSG00000018858.16	ENSMUST00000106539.10	2522	5	3	1743	0	0	multi-exon	FALSE	canonical	3	79	junction_2	428.298377302553	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTTCCAGTGAGAGCT	NA	False	NA	16	True	AATAAA	-16	NA	115294582	115301745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_115294787_115297376_115297414_115300885_115300969_115301057_115301228_115301463
ENSMUSG00000018858.16_115294583_115301745_2	chr11	+	836	6	FSM	ENSMUSG00000018858.16	ENSMUST00000153983.8	2596	6	5	1755	0	0	multi-exon	FALSE	canonical	3	944	junction_3	61.9825781974258	6745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTTCCAGTGAGAGCT	NA	False	NA	16	True	AATAAA	-16	NA	115294582	115301745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_115294787_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
ENSMUSG00000018861.9_115158850_115167749_1	chr11	-	1821	12	FSM	ENSMUSG00000018861.9	ENSMUST00000021078.3	1948	12	127	0	-9	0	multi-exon	FALSE	canonical	3	83	junction_7	15.1766458254911	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGGCTGATAGCTACCA	NA	False	NA	0	True	AATAAA	-17	NA	115167749	115158849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115159281_115159403_115159575_115160270_115160443_115160522_115160723_115160840_115160926_115161148_115161257_115162087_115162190_115162482_115162597_115162702_115162826_115163012_115163109_115166904_115167009_115167634
ENSMUSG00000018865.10_83960298_83989828_1	chr15	-	2385	8	FSM	ENSMUSG00000018865.10	ENSMUST00000229826.2	1319	8	-18	-1048	-18	0	multi-exon	FALSE	canonical	3	60	junction_2	10.0285307284481	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGTCTGTGTGC	NA	False	NA	-1	True	AATAAA	-17	NA	83989828	83960297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_83961784_83962969_83963099_83964387_83964527_83970800_83970896_83974159_83974287_83974792_83974874_83976490_83976622_83989631
ENSMUSG00000018882.13_97206734_97219937_1	chr11	+	1430	8	FSM	ENSMUSG00000018882.13	ENSMUST00000019026.10	2431	8	192	809	0	-809	multi-exon	FALSE	canonical	3	2561	junction_3	172.211545276531	3961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTCTGTACATTTT	NA	False	NA	NA	False	AATAAA	-24	NA	97206733	97219937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607_97217758_97218911_97219086_97219307
ENSMUSG00000018882.13_97206734_97219937_2	chr11	+	1604	8	NNC	ENSMUSG00000018882.13	novel	2431	8	NA	NA	0	-809	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_5	1010.03465287088	3640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTCTGTACATTTT	NA	False	NA	NA	False	AATAAA	-24	NA	97206733	97219937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217433_97217758_97218911_97219086_97219307
ENSMUSG00000018906.15_54010895_54022478_1	chr11	+	1098	8	ISM	ENSMUSG00000018906.15	ENSMUST00000019050.12	2230	16	19106	0	-4604	0	3prime_fragment	FALSE	canonical	3	35	junction_4	18.7224627718924	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAATAGCCTTATTTT	NA	False	NA	15	True	AATAAA	-17	NA	54010894	54022478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017171_54017238_54019873_54019943_54020291_54020389_54022015
ENSMUSG00000018923.14_70342758_70344390_1	chr11	+	726	3	FSM	ENSMUSG00000018923.14	ENSMUST00000019067.8	902	3	13	163	0	0	multi-exon	FALSE	canonical	3	117	junction_2	11	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGTACTTGGGAAGTAGAGG	NA	False	NA	33	True	AATAAA	-43	NA	70342757	70344390	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70342890_70343033_70343165_70343927
ENSMUSG00000018923.14_70342758_70344553_1	chr11	+	1033	2	FSM	ENSMUSG00000018923.14	ENSMUST00000152348.2	870	2	0	-163	0	0	multi-exon	FALSE	canonical	3	117	junction_1	0	1020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAGAGTCTCTCTCTCGC	NA	False	NA	NA	False	AATAAA	-20	NA	70342757	70344553	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70343165_70343927
ENSMUSG00000018965.12_33176222_33185310_1	chr5	+	1702	2	FSM	ENSMUSG00000018965.12	ENSMUST00000019109.8	1764	2	62	0	0	0	multi-exon	FALSE	canonical	3	1727	junction_1	0	2322	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGCCTGGCCTTGATTT	NA	False	NA	9	True	AATAAA	-20	NA	33176221	33185310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_33176499_33183885
ENSMUSG00000019054.14_136990931_136995088_1	chr5	+	791	5	NNC	ENSMUSG00000019054.14	novel	786	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	234.909956153416	2595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGTGTGAGCGAGCA	3268	False	NA	20	True	AATAAA	-21	NA	136990930	136995088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_136991088_136991852_136991986_136993946_136994024_136994418_136994525_136994770
ENSMUSG00000019055.16_147994518_148021182_1	chr4	-	2893	19	FSM	ENSMUSG00000019055.16	ENSMUST00000019199.14	3243	19	42	308	0	-308	multi-exon	FALSE	canonical	3	68	junction_3	12.7855049099544	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATGAGAGATGCCTGGG	NA	False	NA	-4	True	ATTAAA	-15	NA	148021182	147994517	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_147995332_147997676_147997803_148000253_148000401_148001761_148001867_148002590_148002657_148003236_148003351_148004625_148004768_148005463_148005590_148005854_148005960_148007580_148007703_148009973_148010106_148010603_148010706_148011479_148011578_148012914_148012979_148013996_148014110_148015578_148015743_148016083_148016221_148017187_148017280_148021058
ENSMUSG00000019080.9_76585665_76587774_1	chr15	+	1581	5	FSM	ENSMUSG00000019080.9	ENSMUST00000019224.9	2246	5	0	665	0	84	multi-exon	FALSE	canonical	3	46	junction_1	6.01560470775798	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCAGTTTGGATCTTCT	9243	False	NA	16	True	CATAAA	-19	NA	76585664	76587774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76586551_76586843_76586992_76587078_76587204_76587273_76587384_76587462
ENSMUSG00000019080.9_76585665_76587774_2	chr15	+	773	5	NNC	ENSMUSG00000019080.9	novel	2246	5	NA	NA	0	84	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	24.9537071394212	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCAGTTTGGATCTTCT	9243	False	NA	16	True	CATAAA	-19	NA	76585664	76587774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_76585743_76586843_76586992_76587078_76587204_76587273_76587384_76587462
ENSMUSG00000019080.9_76585766_76587774_1	chr15	+	1480	5	FSM	ENSMUSG00000019080.9	ENSMUST00000019224.9	2246	5	101	665	101	84	multi-exon	FALSE	canonical	3	46	junction_1	6.01560470775798	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCAGTTTGGATCTTCT	9344	False	NA	16	True	CATAAA	-19	NA	76585765	76587774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76586551_76586843_76586992_76587078_76587204_76587273_76587384_76587462
ENSMUSG00000019087.14_73340749_73341718_1	chrX	+	669	2	ISM	ENSMUSG00000019087.14	ENSMUST00000135914.8	1128	4	-34	3246	0	-3246	5prime_fragment	FALSE	canonical	3	672	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGGAAGCAATGGAT	NA	False	NA	NA	False	NA	NA	NA	73340748	73341718	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_73340928_73341228
ENSMUSG00000019087.14_73340749_73348296_1	chrX	+	2106	10	NIC	ENSMUSG00000019087.14	novel	2189	10	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	20	junction_5	212.313069560432	4925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGCTTCGTGTCACTC	NA	False	NA	15	True	AATAAA	-20	NA	73340748	73348296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344965_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347402
ENSMUSG00000019088.15_73316823_73325204_1	chrX	-	1487	8	FSM	ENSMUSG00000019088.15	ENSMUST00000239458.2	1625	8	138	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	3.01018678652935	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGTATGCTTAATTCAAT	NA	False	NA	NA	False	AATAAA	-17	NA	73325204	73316822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_73317298_73317383_73317633_73317711_73317825_73317973_73318075_73320084_73320163_73320251_73320341_73320644_73320949_73325126
ENSMUSG00000019102.11_61104258_61109247_1	chr11	+	1412	9	ISM	ENSMUSG00000019102.11	ENSMUST00000019246.4	1729	11	4687	0	4687	0	3prime_fragment	TRUE	canonical	2	6	junction_2	5.14629721255973	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATGCAATGCTTCTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	61104257	61109247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_61104509_61105010_61105097_61105375_61105585_61106315_61106434_61107104_61107247_61107906_61108074_61108488_61108589_61108816_61108948_61109039
ENSMUSG00000019102.11_61104475_61109247_1	chr11	+	1195	9	ISM	ENSMUSG00000019102.11	ENSMUST00000019246.4	1729	11	4904	0	4904	0	3prime_fragment	FALSE	canonical	2	6	junction_2	5.14629721255973	59	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATGCAATGCTTCTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	61104474	61109247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_61104509_61105010_61105097_61105375_61105585_61106315_61106434_61107104_61107247_61107906_61108074_61108488_61108589_61108816_61108948_61109039
ENSMUSG00000019122.9_83465486_83473161_1	chr11	-	1080	4	NNC	ENSMUSG00000019122.9	novel	3006	4	NA	NA	-3699	658	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_3	12.9614813968157	246	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTCTGTCTGCCTCTTTT	NA	False	NA	-1	True	AATAAA	-18	NA	83473161	83465485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_83466322_83466668_83466778_83467200_83467273_83473098
ENSMUSG00000019143.16_36899581_36916210_1	chr18	+	1334	8	NNC	ENSMUSG00000019143.16	novel	896	5	NA	NA	-16480	-3301	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	654	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTCGGATGACTTCCGGT	NA	False	NA	NA	False	NA	NA	NA	36899580	36916210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36903894_36915732_36915823_36916063
ENSMUSG00000019143.16_36899743_36916210_1	chr18	+	1773	13	NNC	ENSMUSG00000019143.16	novel	3336	13	NA	NA	-16318	-3301	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1620	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTCGGATGACTTCCGGT	NA	False	NA	NA	False	NA	NA	NA	36899742	36916210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36903952_36904148_36904248_36904386_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
ENSMUSG00000019143.16_36916322_36924926_1	chr18	+	2386	13	FSM	ENSMUSG00000019143.16	ENSMUST00000152954.8	3336	13	261	689	0	179	multi-exon	FALSE	canonical	3	88	junction_10	16.7752711519731	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGACCTGAGTTCATTTCC	NA	False	NA	13	True	NA	NA	NA	36916321	36924926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36922419_36922663_36923186_36923304_36923521_36923669_36924122
ENSMUSG00000019143.16_36916322_36924926_2	chr18	+	2143	12	FSM	ENSMUSG00000019143.16	ENSMUST00000019287.9	2002	12	38	-179	0	179	multi-exon	FALSE	canonical	3	6	junction_9	36.3770429831556	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGACCTGAGTTCATTTCC	NA	False	NA	13	True	NA	NA	NA	36916321	36924926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36923186_36923304_36923521_36923669_36924122
ENSMUSG00000019158.10_16186888_16189419_1	chr7	+	635	3	FSM	ENSMUSG00000019158.10	ENSMUST00000019302.10	815	3	184	-4	0	0	multi-exon	FALSE	canonical	3	728	junction_1	16.5	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTCTGAGTGATAGCTC	NA	False	NA	20	True	ATTAAA	-21	NA	16186887	16189419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_16187096_16188045_16188139_16189085
ENSMUSG00000019173.12_100608989_100629005_1	chr11	-	776	3	ISM	ENSMUSG00000019173.12	ENSMUST00000019317.12	1967	6	36	3152	-3	337	5prime_fragment	FALSE	canonical	3	135	junction_2	8	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCTCATTTCAGACCACT	NA	False	NA	NA	False	NA	NA	NA	100629005	100608988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_100609409_100610740_100610995_100628903
ENSMUSG00000019179.11_135807516_135819245_1	chr5	+	1279	9	NNC	ENSMUSG00000019179.11	novel	1456	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1677.35203799769	10294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTGTAGATTTCCTTT	635	False	NA	38	True	AGTAAA	-25	NA	135807515	135819245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818160_135818479_135818632_135818930
ENSMUSG00000019179.11_135807516_135819245_2	chr5	+	1258	9	NNC	ENSMUSG00000019179.11	novel	1456	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1679.44328573489	10232	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTGTAGATTTCCTTT	635	False	NA	38	True	AGTAAA	-25	NA	135807515	135819245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_135807656_135812158_135812328_135813037_135813106_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
ENSMUSG00000019179.11_135807516_135819245_3	chr5	+	1262	9	NNC	ENSMUSG00000019179.11	novel	1456	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1659.57155615538	10039	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTGTAGATTTCCTTT	635	False	NA	38	True	AGTAAA	-25	NA	135807515	135819245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818066_135818155_135818479_135818632_135818930
ENSMUSG00000019188.17_152511381_152523583_1	chr2	+	1016	3	FSM	ENSMUSG00000019188.17	ENSMUST00000148156.2	2769	3	-25	1778	0	-1778	multi-exon	FALSE	canonical	3	150	junction_2	4.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTCTCAGTCAATAAGTA	NA	False	NA	NA	False	TTTAAA	-38	NA	152511380	152523583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_152511685_152519461_152519561_152522970
ENSMUSG00000019188.17_152511408_152546972_1	chr2	+	1559	12	FSM	ENSMUSG00000019188.17	ENSMUST00000125366.8	5204	12	27	3618	0	16	multi-exon	FALSE	canonical	3	117	junction_7	14.82905345753	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGCCTAGTGTTTCGTG	NA	False	NA	37	True	NA	NA	NA	152511407	152546972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017_152528107_152530582_152530669_152530756_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152546541
ENSMUSG00000019188.17_152535466_152546972_1	chr2	+	883	5	NNC	ENSMUSG00000019188.17	novel	5204	12	NA	NA	1707	16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	71.0932486246057	198	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGCCTAGTGTTTCGTG	NA	False	NA	37	True	NA	NA	NA	152535465	152546972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_152535692_152536406_152536444_152537401_152537505_152542102_152542189_152546541
ENSMUSG00000019210.11_120772205_120799660_1	chr6	-	1285	10	NNC	ENSMUSG00000019210.11	novel	1312	9	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	409.922214843526	1497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTTGTTGTTCCTTATG	NA	False	NA	-3	True	ATTAAA	-19	NA	120799660	120772204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_120772726_120773358_120773426_120774837_120774926_120778003_120778099_120780268_120780338_120781003_120781094_120784546_120784614_120785322_120785433_120795294_120795361_120799548
ENSMUSG00000019210.11_120772205_120799660_2	chr6	-	1212	9	NNC	ENSMUSG00000019210.11	novel	1312	9	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	337.361985669696	5231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTTGTTGTTCCTTATG	NA	False	NA	-3	True	ATTAAA	-19	NA	120799660	120772204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_120772716_120774833_120774926_120778003_120778099_120780268_120780338_120781003_120781094_120784546_120784614_120785322_120785433_120795294_120795361_120799548
ENSMUSG00000019210.11_120772205_120799660_3	chr6	-	1212	9	NNC	ENSMUSG00000019210.11	novel	1312	9	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	325.921745784168	4960	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTTGTTGTTCCTTATG	NA	False	NA	-3	True	ATTAAA	-19	NA	120799660	120772204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_120772726_120774837_120774926_120778003_120778099_120780268_120780338_120781003_120781094_120784546_120784614_120785322_120785433_120795294_120795355_120799548
ENSMUSG00000019210.11_120772205_120799660_4	chr6	-	1209	9	NIC	ENSMUSG00000019210.11	novel	1312	9	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	337.321966932188	5419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTTGTTGTTCCTTATG	NA	False	NA	-3	True	ATTAAA	-19	NA	120799660	120772204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_120772726_120774837_120774926_120778003_120778099_120780268_120780338_120781012_120781094_120784546_120784614_120785322_120785433_120795294_120795361_120799548
ENSMUSG00000019214.15_25938021_25946384_1	chr17	-	3084	22	FSM	ENSMUSG00000019214.15	ENSMUST00000048054.14	3214	22	9	121	0	0	multi-exon	FALSE	canonical	3	337	junction_21	100.708127696462	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTGGGTCAGGCTCATAG	5683	False	NA	-18	True	TATAAA	-17	NA	25946384	25938020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946095_25946220
ENSMUSG00000019235.10_85182533_85187241_1	chr12	-	1678	7	NNC	ENSMUSG00000019235.10	novel	2881	11	NA	NA	-478	-119	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	54.9989898897142	245	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGTGTGTTTAAGAGCGG	613	False	NA	-12	True	AATAAA	-17	NA	85187241	85182532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_85183079_85183109_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851_85186443_85187117
ENSMUSG00000019235.10_85182533_85187241_2	chr12	-	1675	7	NNC	ENSMUSG00000019235.10	novel	2881	11	NA	NA	-478	-119	at_least_one_novel_splicesite	TRUE	non_canonical	3	76	junction_1	28.7981480886069	255	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGTGTGTTTAAGAGCGG	613	False	NA	-12	True	AATAAA	-17	NA	85187241	85182532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_85183083_85183116_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851_85186443_85187117
ENSMUSG00000019261.4_71367586_71370173_1	chr8	+	755	3	ISM	ENSMUSG00000019261.4	ENSMUST00000213083.2	4635	5	8949	0	3124	0	3prime_fragment	FALSE	canonical	3	276	junction_1	27	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTCTTACTGTCTTAT	-7	True	NA	15	True	AATAAA	-15	NA	71367585	71370173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_71367639_71368994_71369219_71369695
ENSMUSG00000019295.9_33810560_33815200_1	chr5	-	2268	4	FSM	ENSMUSG00000019295.9	ENSMUST00000019439.9	2828	4	560	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	8.99382504215469	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACTTCATTTTGTTTAAC	NA	False	NA	1	True	AATAAA	-19	NA	33815200	33810559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_33811959_33812056_33812217_33812666_33813142_33814966
ENSMUSG00000019297.10_55983897_55991521_1	chr14	+	1651	9	ISM	ENSMUSG00000019297.10	ENSMUST00000019441.9	3694	10	747	1436	747	-1436	3prime_fragment	FALSE	canonical	3	659	junction_1	23.4464149711635	1336	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTATTTTATTTTTTA	NA	False	NA	27	True	NA	NA	NA	55983896	55991521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_55984068_55986788_55986900_55987448_55987591_55988509_55988703_55989514_55989656_55989993_55990120_55990268_55990506_55990716_55990823_55991097
ENSMUSG00000019301.6_100969858_100971353_1	chr11	+	940	4	ISM	ENSMUSG00000019301.6	ENSMUST00000019445.6	1339	6	621	0	621	0	3prime_fragment	FALSE	canonical	2	5	junction_1	8.04155872120988	106	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTGGAGGGGGACACAT	NA	False	NA	NA	False	NA	NA	NA	100969857	100971353	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_100969935_100970014_100970109_100970485_100970661_100970759
ENSMUSG00000019301.6_100970510_100971353_1	chr11	+	745	2	ISM	ENSMUSG00000019301.6	ENSMUST00000019445.6	1339	6	1273	0	1273	0	3prime_fragment	FALSE	canonical	3	24	junction_1	0	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTGGAGGGGGACACAT	630	False	NA	NA	False	NA	NA	NA	100970509	100971353	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_100970661_100970759
ENSMUSG00000019302.17_100900313_100918328_1	chr11	+	905	7	ISM	ENSMUSG00000019302.17	ENSMUST00000103110.10	2716	21	35	34922	0	2	5prime_fragment	FALSE	canonical	3	25	junction_5	68.6547319725467	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAAGCTTACTCCCCTC	NA	False	NA	NA	False	ATTAAA	-22	NA	100900312	100918328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917485_100917590_100918092
ENSMUSG00000019302.17_100900313_100918328_2	chr11	+	884	7	ISM	ENSMUSG00000019302.17	ENSMUST00000154896.8	4162	16	35	17321	0	2	5prime_fragment	FALSE	canonical	3	165	junction_5	19.5256241897666	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAAGCTTACTCCCCTC	NA	False	NA	NA	False	ATTAAA	-22	NA	100900312	100918328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092
ENSMUSG00000019303.15_100978130_100983033_1	chr11	-	1961	8	NIC	ENSMUSG00000019303.15	novel	1291	8	NA	NA	1953	4519	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCAGCGGACTGGCCCC	1840	False	NA	NA	False	NA	NA	NA	100983033	100978129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_100978356_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
ENSMUSG00000019303.15_100982983_100986236_1	chr11	-	1037	7	NIC	ENSMUSG00000019303.15	novel	1030	7	NA	NA	-10	0	intron_retention	FALSE	canonical	3	23	junction_5	148.134698463557	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATTTCCTCTGGATGAT	NA	False	NA	-21	True	TATAAA	-5	NA	100986236	100982982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984641_100985761_100985852_100985983
ENSMUSG00000019303.15_100982983_100986236_2	chr11	-	925	8	NNC	ENSMUSG00000019303.15	novel	1291	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	1	20	junction_5	138.653583893568	978	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATTTCCTCTGGATGAT	NA	False	NA	-21	True	TATAAA	-5	NA	100986236	100982982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984613_100985761_100985852_100985983_100986085_100986168
ENSMUSG00000019303.15_100982983_100986236_3	chr11	-	931	8	FSM	ENSMUSG00000019303.15	ENSMUST00000019447.15	1291	8	26	334	-10	0	multi-exon	FALSE	canonical	3	316	junction_7	41.1021624139417	2428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATTTCCTCTGGATGAT	NA	False	NA	-21	True	TATAAA	-5	NA	100986236	100982982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983_100986085_100986168
ENSMUSG00000019303.15_100982983_100986236_4	chr11	-	953	8	NIC	ENSMUSG00000019303.15	novel	1291	8	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_5	137.651141421689	1446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATTTCCTCTGGATGAT	NA	False	NA	-21	True	TATAAA	-5	NA	100986236	100982982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984641_100985761_100985852_100985983_100986085_100986168
ENSMUSG00000019362.9_84972867_84976348_1	chr8	-	595	4	NNC	ENSMUSG00000019362.9	novel	616	3	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	854.068433375739	12786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCTGTGTGCTGTTTGGT	9834	False	NA	-7	True	AATAAA	-12	NA	84976348	84972866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_84972950_84972970_84973323_84976102_84976159_84976244
ENSMUSG00000019362.9_84972867_84976348_2	chr8	-	593	4	NNC	ENSMUSG00000019362.9	novel	616	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	854.068433375739	11577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCTGTGTGCTGTTTGGT	9834	False	NA	-7	True	AATAAA	-12	NA	84976348	84972866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_84972955_84972977_84973323_84976102_84976159_84976244
ENSMUSG00000019370.11_16649304_16657885_1	chr7	-	2136	6	FSM	ENSMUSG00000019370.11	ENSMUST00000019514.10	2290	6	154	0	-131	0	multi-exon	FALSE	canonical	3	2296	junction_1	82.9925297843125	9639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGACTCTTCCGTCTG	NA	False	NA	-14	True	AATAAA	-15	NA	16657885	16649303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_16650902_16650999_16651136_16651310_16651418_16651509_16651654_16653559_16653591_16657765
ENSMUSG00000019370.11_16650732_16657885_1	chr7	-	697	6	NNC	ENSMUSG00000019370.11	novel	2290	6	NA	NA	-131	337	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	980.640810898669	4319	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCATGACTGCTCTCTCT	NA	False	NA	-8	True	GATAAA	-22	NA	16657885	16650731	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_16650891_16650999_16651136_16651310_16651418_16651509_16651654_16653559_16653591_16657765
ENSMUSG00000019370.11_16650732_16657885_2	chr7	-	708	6	FSM	ENSMUSG00000019370.11	ENSMUST00000019514.10	2290	6	154	1428	-131	337	multi-exon	FALSE	canonical	3	2296	junction_1	82.9925297843125	7832	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCATGACTGCTCTCTCT	NA	False	NA	-8	True	GATAAA	-22	NA	16657885	16650731	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_16650902_16650999_16651136_16651310_16651418_16651509_16651654_16653559_16653591_16657765
ENSMUSG00000019370.11_16650732_16657885_3	chr7	-	695	5	NNC	ENSMUSG00000019370.11	novel	2290	6	NA	NA	-131	337	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1051.65904645945	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCATGACTGCTCTCTCT	NA	False	NA	-8	True	GATAAA	-22	NA	16657885	16650731	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_16650902_16650999_16651136_16651310_16651418_16651509_16651654_16657747
ENSMUSG00000019370.11_16650732_16657885_5	chr7	-	700	5	NNC	ENSMUSG00000019370.11	novel	2290	6	NA	NA	-131	337	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1051.65904645945	1729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCATGACTGCTCTCTCT	NA	False	NA	-8	True	GATAAA	-22	NA	16657885	16650731	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_16650902_16650999_16651136_16651310_16651418_16651509_16651654_16657742
ENSMUSG00000019373.12_59708621_59730638_1	chr11	-	1688	12	NIC	ENSMUSG00000019373.12	novel	1646	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_8	191.53818426898	1307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAATGTGTGTTCTCTCA	NA	False	NA	-4	True	ATTAAA	-27	NA	59730638	59708620	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59715100_59715275_59717115_59717257_59718671_59718852_59720972_59721134_59723709_59723760_59723857_59723971_59727716_59727847_59730495
ENSMUSG00000019428.17_70980397_70987978_1	chr8	+	1698	9	NNC	ENSMUSG00000019428.17	novel	1698	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	448.998590615828	2678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTCTAGGCCTCTTTC	NA	False	NA	27	True	AATAAA	-19	NA	70980396	70987978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_70980491_70982046_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ENSMUSG00000019432.16_35460781_35472659_1	chr17	+	1648	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	717.228757092185	6241	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	13	True	AATGAA	-2	NA	35460780	35472659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35460821_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
ENSMUSG00000019432.16_35460781_35472659_2	chr17	+	1517	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	2	59	junction_1	920.681899463653	1113	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	13	True	AATGAA	-2	NA	35460780	35472659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35460829_35462222_35462427_35463116_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
ENSMUSG00000019432.16_35460781_35472659_3	chr17	+	1648	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_10	696.743288449914	2306	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	13	True	AATGAA	-2	NA	35460780	35472659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472456
ENSMUSG00000019432.16_35460781_35472659_4	chr17	+	1651	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	698.222571963983	3935	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	13	True	AATGAA	-2	NA	35460780	35472659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472453
ENSMUSG00000019432.16_35460781_35472659_5	chr17	+	1648	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	705.255620325	4229	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	13	True	AATGAA	-2	NA	35460780	35472659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472190_35472331_35472448
ENSMUSG00000019432.16_35460781_35472659_6	chr17	+	1651	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	2	81	junction_2	688.851914419928	5212	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	13	True	AATGAA	-2	NA	35460780	35472659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35460829_35462088_35462427_35463116_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
ENSMUSG00000019432.16_35460781_35472659_7	chr17	+	1637	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	127	junction_8	671.17267524833	2375	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	13	True	AATGAA	-2	NA	35460780	35472659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471958_35472085_35472182_35472331_35472448
ENSMUSG00000019432.16_35460781_35472659_8	chr17	+	1646	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	714.925093978383	4498	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	13	True	AATGAA	-2	NA	35460780	35472659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470345_35471722_35471833_35471939_35472085_35472182_35472331_35472448
ENSMUSG00000019432.16_35471948_35472659_1	chr17	+	495	3	NNC	ENSMUSG00000019432.16	novel	2848	10	NA	NA	10305	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1254.5	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	284	False	NA	13	True	AATGAA	-2	NA	35471947	35472659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35472085_35472182_35472335_35472453
ENSMUSG00000019433.10_84379315_84391418_1	chr8	+	1702	6	NIC	ENSMUSG00000019433.10	novel	1522	7	NA	NA	0	95	intron_retention	FALSE	canonical	3	964	junction_1	105.526489565417	1175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTGCTCTCCCTGCTTT	NA	False	NA	21	True	NA	NA	NA	84379314	84391418	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_84379367_84387587_84387910_84388583_84389045_84389677_84389791_84390548_84390631_84390746
ENSMUSG00000019437.18_78069557_78071307_1	chr11	+	1027	4	FSM	ENSMUSG00000019437.18	ENSMUST00000127587.8	1412	4	46	339	0	1	multi-exon	FALSE	canonical	3	157	junction_1	14.2672897060218	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCTGAAGTCCTGTTCT	NA	False	NA	NA	False	AATGAA	-2	NA	78069556	78071307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78069883_78070195_78070279_78070365_78070449_78070772
ENSMUSG00000019437.18_78071761_78074025_1	chr11	+	707	4	NIC	ENSMUSG00000019437.18	novel	2700	4	NA	NA	1662	1290	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	7929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGAATAAGGACTACTTTT	1792	False	NA	NA	False	NA	NA	NA	78071760	78074025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_78071824_78071979_78072050_78072242_78072420_78073628
ENSMUSG00000019437.18_78071761_78074410_1	chr11	+	1769	4	NIC	ENSMUSG00000019437.18	novel	2700	4	NA	NA	1662	1675	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAATGGAGGCTCATAAA	1792	False	NA	NA	False	NA	NA	NA	78071760	78074410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_78071824_78071979_78072050_78072242_78073813_78074344
ENSMUSG00000019437.18_78071761_78074410_10	chr11	+	694	5	NNC	ENSMUSG00000019437.18	novel	2700	4	NA	NA	1662	1675	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAATGGAGGCTCATAAA	1792	False	NA	NA	False	NA	NA	NA	78071760	78074410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_78071824_78071979_78072050_78072242_78072420_78073628_78073813_78074210
ENSMUSG00000019437.18_78071761_78074410_11	chr11	+	1092	4	NIC	ENSMUSG00000019437.18	novel	2700	4	NA	NA	1662	1675	intron_retention	FALSE	non_canonical	0	0	junction_1	0	8131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAATGGAGGCTCATAAA	1792	False	NA	NA	False	NA	NA	NA	78071760	78074410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_78071824_78071979_78072050_78072242_78072420_78073628
ENSMUSG00000019437.18_78071761_78074410_2	chr11	+	551	5	NNC	ENSMUSG00000019437.18	novel	2700	4	NA	NA	1662	1675	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	94224	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAATGGAGGCTCATAAA	1792	False	NA	NA	False	NA	NA	NA	78071760	78074410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_78071824_78071979_78072050_78072242_78072420_78073628_78073804_78074344
ENSMUSG00000019437.18_78071761_78074410_3	chr11	+	552	5	NNC	ENSMUSG00000019437.18	novel	2700	4	NA	NA	1662	1675	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	16674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAATGGAGGCTCATAAA	1792	False	NA	NA	False	NA	NA	NA	78071760	78074410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_78071824_78071979_78072050_78072242_78072420_78073628_78073795_78074334
ENSMUSG00000019437.18_78071761_78074410_4	chr11	+	543	5	NNC	ENSMUSG00000019437.18	novel	2700	4	NA	NA	1662	1675	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11473	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAATGGAGGCTCATAAA	1792	False	NA	NA	False	NA	NA	NA	78071760	78074410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_78071824_78071979_78072050_78072259_78072420_78073628_78073813_78074344
ENSMUSG00000019437.18_78071761_78074410_5	chr11	+	553	5	NNC	ENSMUSG00000019437.18	novel	2700	4	NA	NA	1662	1675	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	68125	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAATGGAGGCTCATAAA	1792	False	NA	NA	False	NA	NA	NA	78071760	78074410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_78071824_78071979_78072050_78072242_78072420_78073635_78073813_78074344
ENSMUSG00000019437.18_78071761_78074410_6	chr11	+	541	5	NNC	ENSMUSG00000019437.18	novel	2700	4	NA	NA	1662	1675	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11020	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAATGGAGGCTCATAAA	1792	False	NA	NA	False	NA	NA	NA	78071760	78074410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_78071824_78071979_78072031_78072242_78072420_78073628_78073813_78074344
ENSMUSG00000019437.18_78071761_78074410_7	chr11	+	548	5	NNC	ENSMUSG00000019437.18	novel	2700	4	NA	NA	1662	1675	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	33811	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAATGGAGGCTCATAAA	1792	False	NA	NA	False	NA	NA	NA	78071760	78074410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_78071824_78071991_78072050_78072242_78072420_78073628_78073813_78074344
ENSMUSG00000019437.18_78071761_78074410_8	chr11	+	753	4	NIC	ENSMUSG00000019437.18	novel	2700	4	NA	NA	1662	1675	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAATGGAGGCTCATAAA	1792	False	NA	NA	False	NA	NA	NA	78071760	78074410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_78071824_78071979_78072420_78073628_78073813_78074344
ENSMUSG00000019437.18_78071761_78074410_9	chr11	+	553	5	NNC	ENSMUSG00000019437.18	novel	2700	4	NA	NA	1662	1675	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	33116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAATGGAGGCTCATAAA	1792	False	NA	NA	False	NA	NA	NA	78071760	78074410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_78071824_78071979_78072039_78072238_78072420_78073628_78073813_78074344
ENSMUSG00000019461.13_69737443_69741862_1	chr11	+	1763	8	FSM	ENSMUSG00000019461.13	ENSMUST00000108633.9	2785	8	0	1022	0	0	multi-exon	FALSE	canonical	3	60	junction_1	4.6246897303539	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTAGAAGCCGGATGT	NA	False	NA	15	True	TATAAA	-15	NA	69737442	69741862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69737518_69737733_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
ENSMUSG00000019471.11_21050727_21061238_1	chr9	-	1749	8	NIC	ENSMUSG00000019471.11	novel	7851	8	NA	NA	0	1522	combination_of_known_junctions	FALSE	canonical	3	62	junction_6	586.784875227641	4814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGCTGGTTCAGTGCTGT	NA	False	NA	-8	True	AATAAA	-18	NA	21061238	21050726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_21051260_21052053_21052126_21052248_21052432_21053306_21053430_21053508_21053625_21053717_21053974_21054242_21054522_21061051
ENSMUSG00000019471.11_21050727_21061238_2	chr9	-	1593	8	NNC	ENSMUSG00000019471.11	novel	7851	8	NA	NA	0	1522	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	605.159685453318	4795	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGCTGGTTCAGTGCTGT	NA	False	NA	-8	True	AATAAA	-18	NA	21061238	21050726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_21051260_21052053_21052126_21052248_21052432_21053306_21053430_21053517_21053625_21053717_21053827_21054242_21054522_21061051
ENSMUSG00000019471.11_21050727_21061238_3	chr9	-	1602	8	FSM	ENSMUSG00000019471.11	ENSMUST00000019615.11	7851	8	40	6209	0	1522	multi-exon	FALSE	canonical	3	1564	junction_6	89.7352113903194	4846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGCTGGTTCAGTGCTGT	NA	False	NA	-8	True	AATAAA	-18	NA	21061238	21050726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21051260_21052053_21052126_21052248_21052432_21053306_21053430_21053508_21053625_21053717_21053827_21054242_21054522_21061051
ENSMUSG00000019478.18_124532724_124562026_1	chr8	+	1385	8	NNC	ENSMUSG00000019478.18	novel	1419	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	159.435483721121	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTACACTGTCCTGCTC	NA	False	NA	12	True	AATAAA	-21	NA	124532723	124562026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_124532906_124550552_124550634_124554062_124554178_124555734_124555798_124557009_124557131_124559541_124559638_124560753_124560887_124561432
ENSMUSG00000019487.12_57556500_57570427_1	chr17	+	1962	14	NNC	ENSMUSG00000019487.12	novel	2136	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	104.323064444771	672	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTGGAGTCTGCACCGC	NA	False	NA	13	True	ATTAAA	-23	NA	57556499	57570427	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_57556572_57557741_57557858_57557954_57558012_57560261_57560410_57560496_57560560_57561062_57561162_57561259_57561389_57562017_57562165_57562272_57562468_57564234_57564345_57568289_57568423_57568639_57568789_57569356_57569473_57569999
ENSMUSG00000019487.12_57556500_57570427_2	chr17	+	1911	13	NIC	ENSMUSG00000019487.12	novel	2136	15	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_2	103.173666967669	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTGGAGTCTGCACCGC	NA	False	NA	13	True	ATTAAA	-23	NA	57556499	57570427	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_57556572_57557741_57557858_57560261_57560410_57560496_57560560_57561056_57561162_57561259_57561389_57562017_57562165_57562272_57562468_57564234_57564345_57568289_57568423_57568639_57568789_57569356_57569473_57569999
ENSMUSG00000019494.15_138159362_138162243_1	chr5	+	1093	10	FSM	ENSMUSG00000019494.15	ENSMUST00000019638.15	1787	10	29	665	0	3	multi-exon	FALSE	canonical	3	3954	junction_1	284.410501446999	17699	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCCTTCCAGTGGCTTT	NA	False	NA	14	True	AATAAA	-15	NA	138159361	138162243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_138159445_138159636_138159760_138159935_138160068_138160398_138160488_138160583_138160647_138160996_138161045_138161391_138161507_138161588_138161682_138161770_138161872_138161997
ENSMUSG00000019494.15_138162862_138170114_1	chr5	+	2375	15	NIC	ENSMUSG00000019494.15	novel	1787	10	NA	NA	1823	7206	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	4169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATTGGCGCGAAACGTCG	675	False	NA	NA	False	NA	NA	NA	138162861	138170114	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
ENSMUSG00000019505.8_62442330_62443883_1	chr11	+	1010	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	333	156	-172	-156	multi-exon	FALSE	canonical	3	35417	junction_1	0	12534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAATTATTCGGTCTGCA	NA	False	NA	NA	False	NA	NA	NA	62442329	62443883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_62442422_62442965
ENSMUSG00000019505.8_62442330_62444039_1	chr11	+	1166	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	333	0	-172	0	multi-exon	FALSE	canonical	3	35417	junction_1	0	92687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	25	True	AATAAA	-24	NA	62442329	62444039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_62442422_62442965
ENSMUSG00000019518.12_138170330_138176949_1	chr5	+	1766	14	NIC	ENSMUSG00000019518.12	novel	3479	15	NA	NA	0	0	intron_retention	FALSE	canonical	3	48	junction_6	10.1742219800537	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTCCTCCTTCCTCCCTC	8143	False	NA	19	True	AAAAAG	-18	NA	138170329	138176949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174526_138174873_138174981_138175078_138175174_138175417_138175463_138176184_138176443_138176538
ENSMUSG00000019518.12_138176879_138185478_1	chr5	+	2401	15	NNC	ENSMUSG00000019518.12	novel	3479	15	NA	NA	2048	6787	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCTGACAGGAGTAGGT	4714	False	NA	NA	False	NA	NA	NA	138176878	138185478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185324
ENSMUSG00000019518.12_138176879_138185478_2	chr5	+	2294	15	NIC	ENSMUSG00000019518.12	novel	3479	15	NA	NA	2048	6787	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCTGACAGGAGTAGGT	4714	False	NA	NA	False	NA	NA	NA	138176878	138185478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185431
ENSMUSG00000019539.12_44732337_44741613_1	chr7	-	1430	7	FSM	ENSMUSG00000019539.12	ENSMUST00000019683.11	1462	7	32	0	-4	0	multi-exon	FALSE	canonical	3	94	junction_6	35.1362427637839	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	6692	False	NA	-4	True	AATAAA	-25	NA	44741613	44732336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741519
ENSMUSG00000019539.12_44732337_44741613_2	chr7	-	1366	7	NIC	ENSMUSG00000019539.12	novel	1453	7	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_6	63.9463751035889	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	6692	False	NA	-4	True	AATAAA	-25	NA	44741613	44732336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741583
ENSMUSG00000019558.15_72719335_72724912_1	chrX	+	1761	12	ISM	ENSMUSG00000019558.15	ENSMUST00000114467.9	2509	14	2487	334	222	15	3prime_fragment	FALSE	canonical	3	360	junction_2	47.1901376445237	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATGCCTCTCCTCCCCAC	NA	False	NA	24	True	AATAAA	-30	NA	72719334	72724912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_72719376_72720255_72720506_72720926_72721060_72722241_72722377_72722471_72722576_72722669_72722795_72723290_72723404_72723524_72723663_72723737_72723841_72723937_72724039_72724110_72724282_72724565
ENSMUSG00000019578.12_56369846_56375027_1	chr17	-	1468	5	NIC	ENSMUSG00000019578.12	novel	2949	11	NA	NA	1407	4199	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCGTCACTGTCTACCTC	NA	False	NA	NA	False	NA	NA	NA	56375027	56369845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_56369892_56370327_56370421_56371000_56371257_56371973_56372426_56374406
ENSMUSG00000019579.14_56483268_56490920_1	chr17	-	1186	6	FSM	ENSMUSG00000019579.14	ENSMUST00000019723.8	1710	6	0	524	0	-524	multi-exon	FALSE	canonical	3	1137	junction_1	57.4505004329814	6277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTATGCTCTCTCTGTGTG	NA	False	NA	1	True	AATGAA	-22	NA	56490920	56483267	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_56484004_56484698_56484772_56485263_56485346_56486363_56486426_56489664_56489716_56490738
ENSMUSG00000019579.14_56483547_56490920_1	chr17	-	907	6	FSM	ENSMUSG00000019579.14	ENSMUST00000019723.8	1710	6	0	803	0	-803	multi-exon	FALSE	canonical	3	1137	junction_1	57.4505004329814	5933	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGAGATGGATTCTCATC	NA	False	NA	-6	True	AATAAA	-43	NA	56490920	56483546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_56484004_56484698_56484772_56485263_56485346_56486363_56486426_56489664_56489716_56490738
ENSMUSG00000019579.14_56483547_56490920_2	chr17	-	900	6	NNC	ENSMUSG00000019579.14	novel	1710	6	NA	NA	0	-803	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	476.623541172695	5796	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGAGATGGATTCTCATC	NA	False	NA	-6	True	AATAAA	-43	NA	56490920	56483546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_56484004_56484698_56484772_56485263_56485339_56486363_56486426_56489664_56489716_56490738
ENSMUSG00000019659.9_110485610_110540532_1	chr9	+	653	7	FSM	ENSMUSG00000019659.9	ENSMUST00000019803.9	834	7	39	142	0	0	multi-exon	FALSE	canonical	3	695	junction_3	22.4258035902098	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTGGTGTGACCTGTT	8521	False	NA	NA	False	NA	NA	NA	110485609	110540532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_110485727_110521383_110521452_110537513_110537594_110538961_110539024_110539194_110539230_110540153_110540231_110540318
ENSMUSG00000019710.14_87826843_87830741_1	chr3	+	984	7	NIC	ENSMUSG00000019710.14	novel	1339	6	NA	NA	0	-228	combination_of_known_junctions	FALSE	canonical	3	77	junction_1	348.953992510315	1743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	37	True	AATAAA	-15	NA	87826842	87830741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_87827013_87827109_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019710.14_87826843_87830741_2	chr3	+	983	6	NNC	ENSMUSG00000019710.14	novel	1339	6	NA	NA	0	-228	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	402.013233613024	1683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	37	True	AATAAA	-15	NA	87826842	87830741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_87827038_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019710.14_87826843_87830741_3	chr3	+	958	6	FSM	ENSMUSG00000019710.14	ENSMUST00000019854.13	1226	6	30	238	0	-228	multi-exon	FALSE	canonical	3	263	junction_1	297.101329515706	2448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	37	True	AATAAA	-15	NA	87826842	87830741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_87827013_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019710.14_87826843_87830974_1	chr3	+	1217	7	NIC	ENSMUSG00000019710.14	novel	1339	6	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	77	junction_1	348.953992510315	2876	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAGTCTTAAAAGCTTTA	NA	False	NA	21	True	AATAAA	-23	NA	87826842	87830974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_87827013_87827109_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019710.14_87827005_87830741_1	chr3	+	822	7	NIC	ENSMUSG00000019710.14	novel	1339	6	NA	NA	135	-228	combination_of_known_junctions	FALSE	canonical	3	77	junction_1	348.953992510315	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	37	True	AATAAA	-15	NA	87827004	87830741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_87827013_87827109_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019710.14_87827005_87830741_2	chr3	+	919	6	FSM	ENSMUSG00000019710.14	ENSMUST00000119968.8	1339	6	192	228	135	-228	multi-exon	FALSE	canonical	3	595	junction_1	165.189103756876	2457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	37	True	AATAAA	-15	NA	87827004	87830741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019710.14_87827005_87830741_3	chr3	+	796	6	FSM	ENSMUSG00000019710.14	ENSMUST00000019854.13	1226	6	192	238	135	-228	multi-exon	FALSE	canonical	3	263	junction_1	297.101329515706	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	37	True	AATAAA	-15	NA	87827004	87830741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_87827013_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUSG00000019715.15_29825440_29848670_1	chr2	+	2315	16	FSM	ENSMUSG00000019715.15	ENSMUST00000019859.9	4030	16	2	1713	0	441	multi-exon	FALSE	canonical	3	458	junction_9	44.6713430387859	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTGTCATTCTCTTGTC	NA	False	NA	6	True	NA	NA	NA	29825439	29848670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093_29830349_29832549_29832779_29833736_29833850_29834000_29834071_29838901_29839045_29839167_29839359_29840613_29840744_29842566_29842672_29845617_29845701_29847761_29847826_29848458
ENSMUSG00000019715.15_29825440_29848941_1	chr2	+	2586	16	FSM	ENSMUSG00000019715.15	ENSMUST00000019859.9	4030	16	2	1442	0	712	multi-exon	FALSE	canonical	3	458	junction_9	44.6713430387859	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCAGGTACTGTTTGCAG	NA	False	NA	7	True	AATAAA	-20	NA	29825439	29848941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093_29830349_29832549_29832779_29833736_29833850_29834000_29834071_29838901_29839045_29839167_29839359_29840613_29840744_29842566_29842672_29845617_29845701_29847761_29847826_29848458
ENSMUSG00000019715.15_29825440_29849430_1	chr2	+	3075	16	FSM	ENSMUSG00000019715.15	ENSMUST00000019859.9	4030	16	2	953	0	-953	multi-exon	FALSE	canonical	3	458	junction_9	44.6713430387859	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTCCTGATATGTGGT	NA	False	NA	6	True	AATAAA	-16	NA	29825439	29849430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093_29830349_29832549_29832779_29833736_29833850_29834000_29834071_29838901_29839045_29839167_29839359_29840613_29840744_29842566_29842672_29845617_29845701_29847761_29847826_29848458
ENSMUSG00000019732.15_73178020_73197597_1	chr8	-	1652	9	FSM	ENSMUSG00000019732.15	ENSMUST00000019876.12	1769	9	117	0	117	0	multi-exon	FALSE	canonical	3	18	junction_4	4.64858849544676	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAAAATATTTTGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	73197597	73178019	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_73178600_73179610_73179704_73181005_73181138_73181913_73182010_73185216_73185406_73188633_73188729_73192275_73192480_73197238_73197341_73197436
ENSMUSG00000019734.17_3668790_3670201_1	chr7	-	608	4	ISM	ENSMUSG00000019734.17_ENSMUSG00000078813.4	ENSMUST00000136678.3	1529	6	3280	-167	-319	0	3prime_fragment	FALSE	canonical	3	25	junction_3	7.48331477354788	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGCGTTTTGAAACCCC	7341	False	NA	-13	True	AATAAA	-15	NA	3670201	3668789	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_3669008_3669100_3669180_3669817_3669974_3670046
ENSMUSG00000019737.15_30014241_30018467_1	chr7	+	1286	8	NIC	ENSMUSG00000019737.15	novel	1355	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	69.7438461918516	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATGTCTGAGAATATCAG	NA	False	NA	7	True	ATTAAA	-14	NA	30014240	30018467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_30014512_30014686_30014826_30015719_30015799_30015997_30016193_30016267_30016517_30017392_30017468_30018097_30018157_30018248
ENSMUSG00000019738.16_29931373_29932812_1	chr7	+	793	7	NNC	ENSMUSG00000019738.16	novel	819	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	152	junction_1	393.380823404271	13721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGTTTCCCGTGTTTAT	NA	False	NA	15	True	AATAAA	-15	NA	29931372	29932812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_29931625_29931647_29931830_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
ENSMUSG00000019738.16_29931457_29932812_1	chr7	+	709	7	NNC	ENSMUSG00000019738.16	novel	819	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	152	junction_1	393.380823404271	12177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGTTTCCCGTGTTTAT	NA	False	NA	15	True	AATAAA	-15	NA	29931456	29932812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_29931625_29931647_29931830_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
ENSMUSG00000019738.16_29931757_29932812_1	chr7	+	432	6	FSM	ENSMUSG00000019738.16	ENSMUST00000019882.16	819	6	384	3	0	0	multi-exon	FALSE	canonical	3	1146	junction_5	44.9239357136037	10917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGTTTCCCGTGTTTAT	NA	False	NA	15	True	AATAAA	-15	NA	29931756	29932812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_29931830_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
ENSMUSG00000019761.11_99276080_99276818_1	chr11	-	465	2	FSM	ENSMUSG00000019761.11	ENSMUST00000211768.2	557	2	105	-13	105	0	multi-exon	FALSE	canonical	3	10	junction_1	0	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTCAGAATTATTATTTA	8444	False	NA	NA	False	AATAAA	-38	NA	99276818	99276079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_99276463_99276736
ENSMUSG00000019763.12_4353171_4382334_1	chr10	-	1829	13	FSM	ENSMUSG00000019763.12	ENSMUST00000042251.11	3139	13	54	1256	0	0	multi-exon	FALSE	canonical	3	107	junction_3	17.5220099684178	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTTCAGCTCTTAAT	5716	False	NA	-5	True	NA	NA	NA	4382334	4353170	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_4353502_4353873_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382265
ENSMUSG00000019773.8_5749160_5755423_1	chr10	-	1763	5	FSM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	177	0	177	0	multi-exon	FALSE	canonical	3	762	junction_1	15.5623744974859	1764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGATGTGTGCAGGTTTTT	NA	False	NA	-9	True	AATAAA	-45	NA	5755423	5749159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
ENSMUSG00000019773.8_5749160_5755423_2	chr10	-	1538	6	NNC	ENSMUSG00000019773.8	novel	1940	5	NA	NA	177	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	312.210441849724	556	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGATGTGTGCAGGTTTTT	NA	False	NA	-9	True	AATAAA	-45	NA	5755423	5749159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5751961_5752185_5752533_5755258
ENSMUSG00000019773.8_5749160_5755423_3	chr10	-	1757	5	NNC	ENSMUSG00000019773.8	novel	1940	5	NA	NA	177	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	339.359230757025	1735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGATGTGTGCAGGTTTTT	NA	False	NA	-9	True	AATAAA	-45	NA	5755423	5749159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752521_5755252
ENSMUSG00000019773.8_5749527_5755423_1	chr10	-	1396	5	FSM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	177	367	177	-367	multi-exon	FALSE	canonical	3	762	junction_1	15.5623744974859	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCAACTTTAATTTAAGAA	NA	False	NA	NA	False	AAAAAG	-11	NA	5755423	5749526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
ENSMUSG00000019774.9_5763059_5768919_1	chr10	-	886	5	ISM	ENSMUSG00000019774.9	ENSMUST00000019908.9	2588	7	4991	1172	-3164	153	3prime_fragment	FALSE	canonical	3	26	junction_4	10.1612007164508	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGACAGTTGTTTTATGC	NA	False	NA	-2	True	TATAAA	-19	NA	5768919	5763058	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_5763407_5764040_5764178_5765551_5765670_5767448_5767613_5768800
ENSMUSG00000019774.9_5763059_5773638_1	chr10	-	1017	7	NNC	ENSMUSG00000019774.9	novel	2588	7	NA	NA	-92	153	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_4	8.85061203156784	56	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGACAGTTGTTTTATGC	NA	False	NA	-2	True	TATAAA	-19	NA	5773638	5763058	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_5763407_5764040_5764178_5765551_5765670_5767448_5767613_5768927_5768985_5770024_5770105_5773525
ENSMUSG00000019775.18_5782875_5872366_1	chr10	-	875	5	FSM	ENSMUSG00000019775.18	ENSMUST00000131996.8	8107	5	20	7212	0	221	multi-exon	FALSE	canonical	0	0	junction_2	0.433012701892219	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAAATTGAGTTCCTGAA	NA	False	NA	NA	False	AATAAA	-16	NA	5872366	5782874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_5783142_5791271_5791507_5792535_5792626_5812518_5812663_5872227
ENSMUSG00000019777.17_36869806_36877885_1	chr10	+	1031	7	ISM	ENSMUSG00000019777.17	ENSMUST00000019911.14	2005	14	19266	0	2044	0	3prime_fragment	FALSE	canonical	3	1167	junction_6	73.2243508373789	769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTTCTGTCTGTTTATT	NA	False	NA	14	True	ATTAAA	-15	NA	36869805	36877885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_36869881_36872984_36873126_36873389_36873499_36873962_36874094_36874409_36874566_36876364_36876423_36877524
ENSMUSG00000019777.17_36874047_36877885_1	chr10	+	622	4	ISM	ENSMUSG00000019777.17	ENSMUST00000019911.14	2005	14	23507	0	-121	0	3prime_fragment	FALSE	canonical	3	1167	junction_3	69.7567201063812	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTTCTGTCTGTTTATT	NA	False	NA	14	True	ATTAAA	-15	NA	36874046	36877885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_36874094_36874409_36874566_36876364_36876423_36877524
ENSMUSG00000019791.13_30484379_30494475_1	chr10	-	633	5	FSM	ENSMUSG00000019791.13	ENSMUST00000161074.8	875	5	0	242	0	0	multi-exon	FALSE	canonical	3	129	junction_1	42.7492689995981	2040	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATGGACAAGTTCCTTAC	NA	False	NA	-32	True	AATAAA	-8	NA	30494475	30484378	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_30484420_30486312_30486440_30487643_30487714_30490708_30490827_30494198
ENSMUSG00000019791.13_30484379_30505645_1	chr10	-	552	6	FSM	ENSMUSG00000019791.13	ENSMUST00000216617.2	687	6	-17	152	-17	0	multi-exon	TRUE	canonical	2	5	junction_5	98.2148664917893	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATGGACAAGTTCCTTAC	NA	False	NA	-32	True	AATAAA	-8	NA	30505645	30484378	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_30484420_30486312_30486440_30487643_30487714_30490708_30490827_30505319_30505398_30505527
ENSMUSG00000019794.14_7601772_7638914_1	chr10	+	1593	10	NNC	ENSMUSG00000019794.14	novel	1775	11	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	166.281852049427	313	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTTTCAATTTAGCACC	NA	False	NA	10	True	AATAAA	-19	NA	7601771	7638914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_7601888_7617171_7617330_7619319_7619501_7624539_7624662_7627307_7627414_7628507_7628667_7635460_7635588_7636498_7636634_7637005_7637134_7638553
ENSMUSG00000019794.14_7601772_7638914_2	chr10	+	1759	11	NIC	ENSMUSG00000019794.14	novel	1775	11	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_10	123.735403179527	1485	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTTTCAATTTAGCACC	NA	False	NA	10	True	AATAAA	-19	NA	7601771	7638914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7624539_7624662_7627307_7627414_7628507_7628667_7635460_7635588_7636498_7636634_7637006_7637126_7638553
ENSMUSG00000019795.18_7505145_7539067_1	chr10	-	2444	8	FSM	ENSMUSG00000019795.18	ENSMUST00000162606.8	2757	8	305	8	0	0	multi-exon	FALSE	canonical	3	339	junction_1	146.985630284746	2508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCACCAGTCTGGATCCTT	NA	False	NA	-8	True	AATAAA	-12	NA	7539067	7505144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ENSMUSG00000019795.18_7505958_7539025_1	chr10	-	1589	8	FSM	ENSMUSG00000019795.18	ENSMUST00000162606.8	2757	8	347	821	0	-813	multi-exon	FALSE	canonical	3	339	junction_1	146.985630284746	1523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCATTGGTGGCCTTTGA	NA	False	NA	-1	True	AATAAA	-14	NA	7539025	7505957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ENSMUSG00000019795.18_7505958_7539067_1	chr10	-	1678	8	FSM	ENSMUSG00000019795.18	ENSMUST00000159917.8	2491	8	0	813	0	-813	multi-exon	FALSE	canonical	3	173	junction_1	203.876012741638	1269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCATTGGTGGCCTTTGA	NA	False	NA	-1	True	AATAAA	-14	NA	7539067	7505957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_7506741_7513772_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ENSMUSG00000019795.18_7506449_7539067_1	chr10	-	1140	8	FSM	ENSMUSG00000019795.18	ENSMUST00000162606.8	2757	8	305	1312	0	-1304	multi-exon	FALSE	canonical	3	339	junction_1	146.985630284746	1724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTTTTGAAGAGTGGCTT	NA	False	NA	-9	True	ATTAAA	-26	NA	7539067	7506448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ENSMUSG00000019795.18_7506449_7539067_2	chr10	-	1187	8	FSM	ENSMUSG00000019795.18	ENSMUST00000159917.8	2491	8	0	1304	0	-1304	multi-exon	FALSE	canonical	3	173	junction_1	203.876012741638	922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTTTTGAAGAGTGGCTT	NA	False	NA	-9	True	ATTAAA	-26	NA	7539067	7506448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_7506741_7513772_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ENSMUSG00000019802.14_42674750_42705278_1	chr10	+	1900	14	ISM	ENSMUSG00000019802.14	ENSMUST00000019937.5	6032	21	37258	3232	-19174	-1	3prime_fragment	FALSE	canonical	3	208	junction_8	25.1125278149062	210	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAGTGTGGGCTGTGCAT	NA	False	NA	22	True	AATAAA	-22	NA	42674749	42705278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_42674852_42677628_42677724_42677817_42677951_42679885_42679979_42681071_42681227_42682519_42682668_42686838_42686922_42688431_42688492_42688660_42688835_42691050_42691210_42692363_42692466_42699876_42699976_42703872_42703978_42704886
ENSMUSG00000019802.14_42692364_42705278_1	chr10	+	698	4	ISM	ENSMUSG00000019802.14	ENSMUST00000155410.8	5206	20	54753	1110	-1560	-1	3prime_fragment	FALSE	canonical	3	254	junction_2	17.2111075245674	153	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAGTGTGGGCTGTGCAT	NA	False	NA	22	True	AATAAA	-22	NA	42692363	42705278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_42692466_42699876_42699976_42703872_42703978_42704886
ENSMUSG00000019804.13_42378286_42411366_1	chr10	+	1087	4	NNC	ENSMUSG00000019804.13	novel	1401	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_3	1054.41579401423	3698	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGCTCTGGTTGC	NA	False	NA	12	True	AATAAA	-13	NA	42378285	42411366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_42378489_42401949_42402046_42409144_42409270_42410703
ENSMUSG00000019804.13_42378286_42411366_2	chr10	+	1142	4	FSM	ENSMUSG00000019804.13	ENSMUST00000019939.12	1401	4	259	0	0	0	multi-exon	FALSE	canonical	3	2006	junction_3	141.176800108548	10460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGCTCTGGTTGC	NA	False	NA	12	True	AATAAA	-13	NA	42378285	42411366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_42378489_42401949_42402046_42409144_42409270_42410648
ENSMUSG00000019806.14_13522798_13744575_1	chr10	-	1405	6	FSM	ENSMUSG00000019806.14	ENSMUST00000162610.8	1554	6	149	0	-2	0	multi-exon	FALSE	canonical	3	87	junction_1	15.3179633110933	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGTCTGCACTGTTCA	NA	False	NA	0	True	AATAAA	-17	NA	13744575	13522797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_13523451_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
ENSMUSG00000019806.14_13528460_13744575_1	chr10	-	1048	6	FSM	ENSMUSG00000019806.14	ENSMUST00000019942.6	1439	6	126	265	-2	-265	multi-exon	FALSE	canonical	3	37	junction_1	33.5654584357193	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACGGAAGCAGACTGGTT	NA	False	NA	NA	False	AATAAA	-16	NA	13744575	13528459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_13528756_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
ENSMUSG00000019808.9_13428945_13438710_1	chr10	+	749	6	FSM	ENSMUSG00000019808.9	ENSMUST00000019944.9	1466	6	307	410	307	-410	multi-exon	FALSE	non_canonical	0	0	junction_3	288.190631353623	6343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCGCTCGTCATTTGC	NA	False	NA	-36	True	NA	NA	NA	13428944	13438710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_13429106_13432595_13432701_13435857_13436009_13437447_13437555_13438380_13438454_13438558
ENSMUSG00000019808.9_13428945_13438763_1	chr10	+	795	6	NNC	ENSMUSG00000019808.9	novel	1466	6	NA	NA	307	-357	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	328.833453286006	8127	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTGGCAATGTAAACAAC	NA	False	NA	17	True	TTTAAA	-3	NA	13428944	13438763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_13429106_13432602_13432701_13435857_13436009_13437447_13437555_13438380_13438454_13438558
ENSMUSG00000019808.9_13428997_13438763_1	chr10	+	750	6	FSM	ENSMUSG00000019808.9	ENSMUST00000019944.9	1466	6	359	357	359	-357	multi-exon	FALSE	non_canonical	0	0	junction_3	288.190631353623	7895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTGGCAATGTAAACAAC	NA	False	NA	17	True	TTTAAA	-3	NA	13428996	13438763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_13429106_13432595_13432701_13435857_13436009_13437447_13437555_13438380_13438454_13438558
ENSMUSG00000019809.17_13399886_13428864_1	chr10	-	2084	12	FSM	ENSMUSG00000019809.17	ENSMUST00000019945.15	2129	12	19	26	0	0	multi-exon	FALSE	canonical	3	96	junction_6	16.7987602848376	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATATAGCTTTGTTT	NA	False	NA	NA	False	AATAAA	-8	NA	13428864	13399885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428569
ENSMUSG00000019809.17_13400517_13428864_1	chr10	-	1453	12	FSM	ENSMUSG00000019809.17	ENSMUST00000019945.15	2129	12	19	657	0	-631	multi-exon	FALSE	canonical	3	96	junction_6	16.7987602848376	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTTCATTTCATAATGAAG	NA	False	NA	-3	True	AATAAA	-18	NA	13428864	13400516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428569
ENSMUSG00000019809.17_13400517_13428883_1	chr10	-	1472	12	FSM	ENSMUSG00000019809.17	ENSMUST00000019945.15	2129	12	0	657	0	-631	multi-exon	FALSE	canonical	3	96	junction_6	16.7987602848376	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTTCATTTCATAATGAAG	NA	False	NA	-3	True	AATAAA	-18	NA	13428883	13400516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428569
ENSMUSG00000019813.17_41618698_41628258_1	chr10	-	922	3	NNC	ENSMUSG00000019813.17	novel	711	3	NA	NA	-5624	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	97	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTGTGAGGCCTTGGTC	5888	False	NA	NA	False	NA	NA	NA	41628258	41618697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_41619218_41621766_41621918_41628007
ENSMUSG00000019818.16_41395410_41405044_1	chr10	+	922	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	0	2000	0	2	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGTGTGGCTGTCGTCTTT	NA	False	NA	6	True	TTTAAA	-15	NA	41395409	41405044	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
ENSMUSG00000019818.16_41395410_41405328_1	chr10	+	1206	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	0	1716	0	286	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATCCCTAGAGTAAATTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	41395409	41405328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
ENSMUSG00000019822.13_41361404_41363028_1	chr10	-	745	6	NIC	ENSMUSG00000019822.13	novel	4150	6	NA	NA	1213	234	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGCTTCAGGAACTTAGCA	NA	False	NA	NA	False	NA	NA	NA	41363028	41361403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
ENSMUSG00000019837.9_40125198_40133672_1	chr10	-	1032	6	FSM	ENSMUSG00000019837.9	ENSMUST00000217537.2	2526	6	-5	1499	0	148	multi-exon	FALSE	canonical	3	403	junction_5	105.423716496811	3190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGTGCAGCGAACACTT	8581	False	NA	-12	True	NA	NA	NA	40133672	40125197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133574
ENSMUSG00000019837.9_40125520_40133672_1	chr10	-	710	6	FSM	ENSMUSG00000019837.9	ENSMUST00000217537.2	2526	6	-5	1821	0	0	multi-exon	FALSE	canonical	3	403	junction_5	105.423716496811	2812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGTCTTGTATGCAATT	8581	False	NA	-16	True	AAAACA	-21	NA	40133672	40125519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133574
ENSMUSG00000019837.9_40125520_40134120_1	chr10	-	1158	6	FSM	ENSMUSG00000019837.9	ENSMUST00000217537.2	2526	6	-453	1821	-16	0	multi-exon	FALSE	canonical	3	403	junction_5	105.423716496811	3018	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGTCTTGTATGCAATT	8133	False	NA	-16	True	AAAACA	-21	NA	40134120	40125519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133574
ENSMUSG00000019842.7_39489239_39530821_1	chr10	+	2076	9	FSM	ENSMUSG00000019842.7	ENSMUST00000019987.7	2867	9	309	482	309	0	multi-exon	FALSE	canonical	3	53	junction_2	7.56534037568701	263	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGTTTATCTCAGTGG	NA	False	NA	5	True	AATAAA	-18	NA	39489238	39530821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_39489343_39501845_39502656_39510530_39510721_39515215_39515395_39517301_39517391_39521703_39521773_39522844_39522962_39526901_39526977_39530378
ENSMUSG00000019843.15_39409266_39440419_1	chr10	+	1087	5	NIC	ENSMUSG00000019843.15	novel	333	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	54.9152756525905	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCAGGACAGGTGTTTGG	NA	False	NA	NA	False	AATAAA	-27	NA	39409265	39440419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_39409330_39409629_39409707_39409804_39409959_39427382_39427515_39439759
ENSMUSG00000019845.9_39010019_39025724_1	chr10	+	1599	12	FSM	ENSMUSG00000019845.9	ENSMUST00000019991.8	2929	12	0	1330	0	2	multi-exon	FALSE	canonical	3	143	junction_3	7.58423767804153	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGTTTCTATTTTATTA	NA	False	NA	9	True	NA	NA	NA	39010018	39025724	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_39010104_39010201_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39020559_39020751_39020928_39021568_39021710_39023307_39023449_39023758_39023934_39025454
ENSMUSG00000019845.9_39010019_39026093_1	chr10	+	1968	12	FSM	ENSMUSG00000019845.9	ENSMUST00000019991.8	2929	12	0	961	0	0	multi-exon	FALSE	canonical	3	143	junction_3	7.58423767804153	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTCAGGGTAGTTTTTG	NA	False	NA	-89	True	AATATA	-13	NA	39010018	39026093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_39010104_39010201_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39020559_39020751_39020928_39021568_39021710_39023307_39023449_39023758_39023934_39025454
ENSMUSG00000019845.9_39010019_39026198_1	chr10	+	2073	12	FSM	ENSMUSG00000019845.9	ENSMUST00000019991.8	2929	12	0	856	0	105	multi-exon	FALSE	canonical	3	143	junction_3	7.58423767804153	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTAAACGGCTGCTACGG	NA	False	NA	16	True	AATAAA	-16	NA	39010018	39026198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_39010104_39010201_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39020559_39020751_39020928_39021568_39021710_39023307_39023449_39023758_39023934_39025454
ENSMUSG00000019849.12_44943299_45035091_1	chr10	+	2730	15	FSM	ENSMUSG00000019849.12	ENSMUST00000099858.4	10933	15	0	8203	0	-8203	multi-exon	FALSE	canonical	3	732	junction_5	67.3298687395854	1087	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCTTTAGTTTTGGTTC	NA	False	NA	31	True	AATAAA	-16	NA	44943298	45035091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_44943472_44948148_44948224_44967088_44967223_44968757_44968889_44971076_44971287_44973488_44973611_44983867_44983974_44991158_44991351_44996738_44996937_45002059_45002164_45024080_45024218_45026531_45026627_45029150_45029283_45031611_45031769_45034327
ENSMUSG00000019849.12_45026589_45035091_1	chr10	+	1091	4	ISM	ENSMUSG00000019849.12	ENSMUST00000099858.4	10933	15	83290	8203	83290	-8203	3prime_fragment	FALSE	canonical	3	820	junction_3	27.1456974286698	1005	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCTTTAGTTTTGGTTC	NA	False	NA	31	True	AATAAA	-16	NA	45026588	45035091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_45026627_45029150_45029283_45031611_45031769_45034327
ENSMUSG00000019853.7_18416506_18421672_1	chr10	-	1123	4	FSM	ENSMUSG00000019853.7	ENSMUST00000020000.7	2535	4	152	1260	-37	0	multi-exon	FALSE	canonical	3	26	junction_2	0.471404520791032	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCCTTGCCTCCGCTGTT	NA	False	NA	NA	False	AGTAAA	-22	NA	18421672	18416505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_18417081_18420012_18420194_18420825_18420962_18421441
ENSMUSG00000019857.8_53473204_53484155_1	chr10	+	879	4	FSM	ENSMUSG00000019857.8	ENSMUST00000020004.8	2201	4	156	1166	-147	77	multi-exon	FALSE	canonical	3	699	junction_3	57.7119282875444	985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTCTCTAATGTGTTA	1677	False	NA	6	True	TATAAA	-19	NA	53473203	53484155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_53473395_53478443_53478560_53482204_53482382_53483760
ENSMUSG00000019857.8_53473204_53484155_2	chr10	+	871	4	NNC	ENSMUSG00000019857.8	novel	2201	4	NA	NA	-147	77	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	336.305747134294	948	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTCTCTAATGTGTTA	1677	False	NA	6	True	TATAAA	-19	NA	53473203	53484155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_53473395_53478451_53478560_53482204_53482382_53483760
ENSMUSG00000019857.8_53473351_53484155_1	chr10	+	732	4	FSM	ENSMUSG00000019857.8	ENSMUST00000020004.8	2201	4	303	1166	0	77	multi-exon	FALSE	canonical	3	699	junction_3	57.7119282875444	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTCTCTAATGTGTTA	1824	False	NA	6	True	TATAAA	-19	NA	53473350	53484155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_53473395_53478443_53478560_53482204_53482382_53483760
ENSMUSG00000019868.17_14531099_14581244_1	chr10	-	1314	8	FSM	ENSMUSG00000019868.17	ENSMUST00000154132.8	1974	8	60	600	0	0	multi-exon	FALSE	canonical	3	590	junction_6	66.3663302881692	3085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAGATTACCAGAATAG	NA	False	NA	-32	True	ATTAAA	-6	NA	14581244	14531098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_14531590_14536809_14536897_14543675_14543853_14551677_14551787_14559807_14559884_14560624_14560753_14563357_14563453_14581093
ENSMUSG00000019873.9_66849461_66932625_1	chr10	-	838	8	FSM	ENSMUSG00000019873.9	ENSMUST00000020023.9	5430	8	99	4493	0	-2010	multi-exon	FALSE	canonical	3	113	junction_7	23.5068379109447	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATTTTCTAACCTGATG	NA	False	NA	-10	True	AATAAA	-16	NA	66932625	66849460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_66849566_66850680_66850827_66857527_66857673_66870377_66870492_66871663_66871785_66875279_66875357_66898777_66898851_66932568
ENSMUSG00000019877.11_57392576_57408573_1	chr10	-	2121	9	FSM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	53	706	0	-706	multi-exon	FALSE	canonical	3	187	junction_6	44.2279252848243	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTGCTCTTTGTGAACA	NA	False	NA	NA	False	AAGAAA	-34	NA	57408573	57392575	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_57393389_57395458_57395690_57395793_57395939_57399051_57399313_57400056_57400195_57400415_57400496_57401420_57401591_57403760_57403923_57408452
ENSMUSG00000019877.11_57393108_57408573_1	chr10	-	1589	9	FSM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	53	1238	0	-1238	multi-exon	FALSE	canonical	3	187	junction_6	44.2279252848243	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTTCTTGCTAAGTCT	NA	False	NA	NA	False	AATAGA	-19	NA	57408573	57393107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_57393389_57395458_57395690_57395793_57395939_57399051_57399313_57400056_57400195_57400415_57400496_57401420_57401591_57403760_57403923_57408452
ENSMUSG00000019883.12_29189496_29221947_1	chr10	+	2338	6	FSM	ENSMUSG00000019883.12	ENSMUST00000020034.6	3856	6	0	1518	0	391	multi-exon	FALSE	canonical	3	81	junction_5	6.04648658313239	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCACGACCTATGGATCTT	NA	False	NA	12	True	AATAAA	-28	NA	29189495	29221947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_29189730_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
ENSMUSG00000019883.12_29189659_29221947_1	chr10	+	2175	6	FSM	ENSMUSG00000019883.12	ENSMUST00000020034.6	3856	6	163	1518	0	391	multi-exon	FALSE	canonical	3	81	junction_5	6.04648658313239	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCACGACCTATGGATCTT	NA	False	NA	12	True	AATAAA	-28	NA	29189658	29221947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_29189730_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
ENSMUSG00000019883.12_29222172_29238043_1	chr10	+	1989	4	NIC	ENSMUSG00000019883.12	novel	3856	6	NA	NA	32513	14578	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGACGCGCGCGGCCGTCA	6153	False	NA	NA	False	NA	NA	NA	29222171	29238043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_29223880_29230287_29230444_29237280_29237342_29237979
ENSMUSG00000019889.11_28461616_28472033_1	chr10	+	1194	8	ISM	ENSMUSG00000019889.11	ENSMUST00000218276.2	4754	34	510766	-71	-1373	71	3prime_fragment	FALSE	canonical	3	153	junction_2	29.1148324636731	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGACTGTATGAGAGCA	NA	False	NA	29	True	AATAAA	-17	NA	28461615	28472033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_28461692_28461918_28462069_28462903_28463078_28464923_28465056_28465254_28465381_28467880_28468045_28468765_28468902_28471797
ENSMUSG00000019894.15_103203644_103231231_1	chr10	+	1482	5	NIC	ENSMUSG00000019894.15	novel	3543	12	NA	NA	0	-1788	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	32.0341614530488	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTAGTATCATTTATAGT	NA	False	NA	2	True	ATTAAA	-15	NA	103203643	103231231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_103204015_103224757_103225203_103229251_103229410_103229761_103229889_103230850
ENSMUSG00000019894.15_103203644_103231231_2	chr10	+	1352	5	ISM	ENSMUSG00000019894.15	ENSMUST00000179636.3	3543	12	-25	24005	0	-1788	5prime_fragment	FALSE	canonical	3	31	junction_1	35.7596140918774	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTAGTATCATTTATAGT	NA	False	NA	2	True	ATTAAA	-15	NA	103203643	103231231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_103204015_103224887_103225203_103229251_103229410_103229761_103229889_103230850
ENSMUSG00000019894.15_103204094_103231231_1	chr10	+	1199	5	NNC	ENSMUSG00000019894.15	novel	2395	3	NA	NA	390	-1788	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	44.144648599802	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTAGTATCATTTATAGT	NA	False	NA	2	True	ATTAAA	-15	NA	103204093	103231231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_103204182_103224757_103225203_103229251_103229410_103229761_103229889_103230850
ENSMUSG00000019894.15_103204094_103231231_2	chr10	+	1069	5	NNC	ENSMUSG00000019894.15	novel	2395	3	NA	NA	390	-1788	at_least_one_novel_splicesite	FALSE	canonical	2	18	junction_1	41.1969355656461	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTAGTATCATTTATAGT	NA	False	NA	2	True	ATTAAA	-15	NA	103204093	103231231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_103204182_103224887_103225203_103229251_103229410_103229761_103229889_103230850
ENSMUSG00000019897.9_105677365_105683141_1	chr10	+	823	4	FSM	ENSMUSG00000019897.9	ENSMUST00000020049.9	1813	4	437	553	0	-553	multi-exon	FALSE	canonical	3	411	junction_3	54.9201440477192	1421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGATTGTTAAATTATTTT	NA	False	NA	12	True	AATGAA	-20	NA	105677364	105683141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_105677517_105678402_105678710_105681210_105681311_105682877
ENSMUSG00000019897.9_105677365_105683285_1	chr10	+	967	4	FSM	ENSMUSG00000019897.9	ENSMUST00000020049.9	1813	4	437	409	0	-409	multi-exon	FALSE	canonical	3	411	junction_3	54.9201440477192	2636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTGAGCTCACAGTGAGA	NA	False	NA	8	True	AATATA	-14	NA	105677364	105683285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_105677517_105678402_105678710_105681210_105681311_105682877
ENSMUSG00000019897.9_105677365_105683694_1	chr10	+	1376	4	FSM	ENSMUSG00000019897.9	ENSMUST00000020049.9	1813	4	437	0	0	0	multi-exon	FALSE	canonical	3	411	junction_3	54.9201440477192	2902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGTGTAATAGAAGCGTT	NA	False	NA	NA	False	AATAAA	-18	NA	105677364	105683694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_105677517_105678402_105678710_105681210_105681311_105682877
ENSMUSG00000019916.15_59159190_59207783_1	chr10	+	2628	15	FSM	ENSMUSG00000019916.15	ENSMUST00000009789.15	4043	15	72	1343	0	5	multi-exon	FALSE	canonical	3	22	junction_8	56.7996838163088	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTGTGTGGTATTTTCA	NA	False	NA	23	True	TTTAAA	-3	NA	59159189	59207783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59184002_59184243_59186225_59186423_59187904_59188082_59190161_59190233_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
ENSMUSG00000019916.15_59159190_59207783_2	chr10	+	2628	15	FSM	ENSMUSG00000019916.15	ENSMUST00000105466.3	2918	15	0	290	0	5	multi-exon	FALSE	canonical	3	143	junction_7	20.6288880070682	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTGTGTGGTATTTTCA	NA	False	NA	23	True	TTTAAA	-3	NA	59159189	59207783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59184002_59184243_59186225_59186423_59187904_59188082_59191171_59191243_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
ENSMUSG00000019920.19_58159288_58257620_1	chr10	+	1434	10	FSM	ENSMUSG00000019920.19	ENSMUST00000020078.14	4327	10	0	2893	0	15	multi-exon	FALSE	canonical	3	235	junction_4	23.8875968642854	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAAAAAAAGGTTAAAGG	NA	False	NA	NA	False	ATTAAA	-27	NA	58159287	58257620	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_58159510_58234842_58235003_58243891_58243959_58245381_58245503_58245874_58246025_58248224_58248376_58249794_58249888_58252455_58252505_58254220_58254297_58257275
ENSMUSG00000019920.19_58159392_58236144_1	chr10	+	1420	2	ISM	ENSMUSG00000019920.19	ENSMUST00000020078.14	4327	10	104	24369	104	-10014	5prime_fragment	FALSE	canonical	3	317	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCCATTTGTGAATTGTC	NA	False	NA	NA	False	AAAACA	-43	NA	58159391	58236144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_58159510_58234842
ENSMUSG00000019920.19_58159392_58257620_1	chr10	+	1330	10	FSM	ENSMUSG00000019920.19	ENSMUST00000020078.14	4327	10	104	2893	104	15	multi-exon	FALSE	canonical	3	235	junction_4	23.8875968642854	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAAAAAAAGGTTAAAGG	NA	False	NA	NA	False	ATTAAA	-27	NA	58159391	58257620	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_58159510_58234842_58235003_58243891_58243959_58245381_58245503_58245874_58246025_58248224_58248376_58249794_58249888_58252455_58252505_58254220_58254297_58257275
ENSMUSG00000019942.14_69174154_69188745_1	chr10	-	1174	8	FSM	ENSMUSG00000019942.14	ENSMUST00000020099.13	4375	8	23	3178	-5	0	multi-exon	FALSE	canonical	3	2056	junction_1	102.156542539739	8558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTCTGTATATGTGCA	NA	False	NA	-28	True	TTTAAA	-1	NA	69188745	69174153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69188665
ENSMUSG00000019943.11_98750536_98830617_1	chr10	+	1420	8	NIC	ENSMUSG00000019943.11	novel	1249	4	NA	NA	268	188	combination_of_known_junctions	FALSE	canonical	3	223	junction_6	12.7022414862697	270	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGTGTTACAGGGGAAACT	NA	False	NA	NA	False	AAAAAG	-7	NA	98750535	98830617	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_98750656_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923_98827065_98829728_98829768_98830507
ENSMUSG00000019947.11_67937764_67972456_1	chr10	-	770	6	ISM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	0	5480	0	-5480	5prime_fragment	TRUE	canonical	3	87	junction_5	23.2292918531754	205	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGAGAACACCCCCAA	NA	False	NA	NA	False	AAGAAA	-1	NA	67972456	67937763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_67972315
ENSMUSG00000019947.11_67937764_67972598_1	chr10	-	912	6	ISM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	-142	5480	-142	-5480	5prime_fragment	FALSE	canonical	3	87	junction_5	23.2292918531754	446	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGAGAACACCCCCAA	NA	False	NA	NA	False	AAGAAA	-1	NA	67972598	67937763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_67972315
ENSMUSG00000019948.5_89547833_89568158_1	chr10	-	1756	11	NIC	ENSMUSG00000019948.5	novel	1705	11	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_7	88.8560633834293	1374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATCTGTTTAATGTTTA	NA	False	NA	-18	True	AATAAA	-21	NA	89568158	89547832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_89548423_89550731_89550871_89552934_89553107_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561816_89562498_89562623_89564015_89564085_89564761_89564880_89568035
ENSMUSG00000019948.5_89547833_89568158_2	chr10	-	1701	11	NNC	ENSMUSG00000019948.5	novel	1705	11	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	91.1333638136989	1882	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATCTGTTTAATGTTTA	NA	False	NA	-18	True	AATAAA	-21	NA	89568158	89547832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_89548423_89550731_89550871_89552934_89553102_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561766_89562498_89562623_89564015_89564085_89564761_89564880_89568035
ENSMUSG00000019948.5_89547833_89568158_3	chr10	-	1702	11	NNC	ENSMUSG00000019948.5	novel	1705	11	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	92.0845263874447	1875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATCTGTTTAATGTTTA	NA	False	NA	-18	True	AATAAA	-21	NA	89568158	89547832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_89548423_89550731_89550863_89552930_89553107_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561766_89562498_89562623_89564015_89564085_89564761_89564880_89568035
ENSMUSG00000019948.5_89561638_89568158_2	chr10	-	444	4	ISM	ENSMUSG00000019948.5	ENSMUST00000218965.2	618	7	-23	730	-1	-151	5prime_fragment	FALSE	canonical	3	25	junction_3	131.788551180375	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATTCGGTGAGCTACATT	NA	False	NA	NA	False	AAAAAG	-13	NA	89568158	89561637	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_89561766_89562498_89562623_89564015_89564085_89568035
ENSMUSG00000019961.18_90984978_90989208_1	chr10	-	1008	5	FSM	ENSMUSG00000019961.18	ENSMUST00000213262.2	788	5	348	-568	348	0	multi-exon	FALSE	canonical	3	670	junction_4	84.0903531922658	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGATTTATGACTTATT	NA	False	NA	-7	True	ATTAAA	-18	NA	90989208	90984977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_90985621_90987570_90987660_90988489_90988601_90988946_90989043_90989139
ENSMUSG00000019969.15_83734946_83781275_1	chr12	+	2076	12	FSM	ENSMUSG00000019969.15	ENSMUST00000041806.13	2690	12	20	594	0	-594	multi-exon	FALSE	canonical	3	287	junction_9	21.5122490573192	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTACTGTCCAGGAGGTT	3365	False	NA	NA	False	AATAAA	-17	NA	83734945	83781275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_83735068_83746128_83746196_83746285_83746426_83759077_83759329_83761537_83761680_83769764_83769833_83771269_83771491_83774999_83775099_83775471_83775559_83777312_83777487_83778447_83778567_83780689
ENSMUSG00000019970.16_21870582_21875802_1	chr10	+	2434	12	NNC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	280.256051755274	1311	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	18	True	AATAAA	-24	NA	21870581	21875802	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871697_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ENSMUSG00000019971.11_100408127_100425097_1	chr10	+	2404	7	Fusion	ENSMUSG00000019971.11_ENSMUSG00000112000.2	novel	2170	2	NA	NA	331	5524	multi-exon	FALSE	non_canonical	0	0	junction_1	0	161	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGAGAGGCGGGGACTCAC	NA	False	NA	NA	False	NA	NA	NA	100408126	100425097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr10_+_100409623_100411578_100411749_100413022_100413221_100414176_100414294_100419775_100419872_100422052_100422171_100424888
ENSMUSG00000019971.11_100409258_100425097_1	chr10	+	1273	7	Fusion	ENSMUSG00000019971.11_ENSMUSG00000112000.2	novel	1860	2	NA	NA	1462	5524	multi-exon	FALSE	non_canonical	0	0	junction_1	0	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGAGAGGCGGGGACTCAC	NA	False	NA	NA	False	NA	NA	NA	100409257	100425097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr10_+_100409623_100411578_100411749_100413022_100413221_100414176_100414294_100419775_100419872_100422052_100422171_100424888
ENSMUSG00000019975.13_90918919_90938475_1	chr10	+	1217	3	FSM	ENSMUSG00000019975.13	ENSMUST00000020150.10	1328	3	117	-6	0	6	multi-exon	FALSE	canonical	3	39	junction_2	32.5	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTCCATAATATTTTT	755	False	NA	18	True	AATAAA	-23	NA	90918918	90938475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_90919159_90929000_90929119_90937616
ENSMUSG00000019978.17_25377889_25399417_1	chr10	+	2032	6	ISM	ENSMUSG00000019978.17	ENSMUST00000092645.7	4280	20	93623	0	0	0	3prime_fragment	FALSE	canonical	3	365	junction_1	14.319217855735	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCACTTCTCTTTTCAT	302	False	NA	NA	False	AATAAA	-20	NA	25377888	25399417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
ENSMUSG00000019996.18_20149163_20157268_1	chr10	+	2097	7	ISM	ENSMUSG00000019996.18	ENSMUST00000116259.5	3831	18	124433	68	3916	0	3prime_fragment	FALSE	canonical	3	250	junction_2	26.2958594121246	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTTCTATTTATTTAAAT	166	False	NA	14	True	ATTAAA	-19	NA	20149162	20157268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_20149201_20149524_20149627_20149991_20150043_20150347_20150406_20151921_20152022_20153870_20154092_20155741
ENSMUSG00000019998.7_24025225_24064182_1	chr10	+	1497	10	FSM	ENSMUSG00000019998.7	ENSMUST00000220041.2	3435	10	0	1938	0	-677	multi-exon	FALSE	canonical	3	188	junction_6	15.4632180063243	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGATGTGTATGTATATA	NA	False	NA	14	True	AATAAA	-15	NA	24025224	24064182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_24025307_24031132_24031283_24053063_24053134_24055014_24055109_24055823_24055962_24056760_24056814_24057415_24057513_24058666_24058740_24060884_24060968_24063525
ENSMUSG00000019998.7_24025225_24064859_2	chr10	+	2174	10	FSM	ENSMUSG00000019998.7	ENSMUST00000220041.2	3435	10	0	1261	0	0	multi-exon	FALSE	canonical	3	188	junction_6	15.4632180063243	892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTCCCAAGAACTCT	NA	False	NA	23	True	AATAAA	-25	NA	24025224	24064859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_24025307_24031132_24031283_24053063_24053134_24055014_24055109_24055823_24055962_24056760_24056814_24057415_24057513_24058666_24058740_24060884_24060968_24063525
ENSMUSG00000020018.7_93419259_93425568_1	chr10	-	493	4	FSM	ENSMUSG00000020018.7	ENSMUST00000020203.7	861	4	0	368	0	-368	multi-exon	FALSE	canonical	3	2132	junction_3	195.841772867792	32836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTTGACTTGTGGACTA	NA	False	NA	-9	True	AATAAA	-20	NA	93425568	93419258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_93419393_93419891_93419957_93423859_93423986_93425400
ENSMUSG00000020021.5_93973365_93977856_1	chr10	+	581	4	ISM	ENSMUSG00000020021.5	ENSMUST00000020208.5	8044	21	101502	3345	4340	2123	3prime_fragment	FALSE	canonical	3	18	junction_3	3.68178700572909	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTGGTCATAACTGTTT	NA	False	NA	2	True	ATTAAA	-14	NA	93973364	93977856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_93973426_93974145_93974275_93975600_93975750_93977614
ENSMUSG00000020024.8_94602301_94626199_1	chr10	+	1295	6	ISM	ENSMUSG00000020024.8	ENSMUST00000218076.2	1692	10	26355	-144	26355	144	3prime_fragment	FALSE	canonical	0	0	junction_3	91.260067937735	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTTGTGTTTAATTTTC	NA	False	NA	7	True	AATAAA	-16	NA	94602300	94626199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_94602380_94604680_94604839_94606806_94606937_94622605_94622710_94624508_94624699_94625565
ENSMUSG00000020027.19_95223658_95252719_1	chr10	-	1435	5	NIC	ENSMUSG00000020027.19	novel	4242	5	NA	NA	0	-129	combination_of_known_splicesites	FALSE	canonical	3	22	junction_3	175.888281303787	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAACAACTAAAA	NA	False	NA	NA	False	NA	NA	NA	95252719	95223657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_95224258_95224751_95224905_95226426_95226508_95250692_95251054_95252479
ENSMUSG00000020027.19_95247897_95252719_1	chr10	-	1677	3	FSM	ENSMUSG00000020027.19	ENSMUST00000020215.16	2222	3	0	545	0	385	multi-exon	FALSE	canonical	3	447	junction_2	23.5	1086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95252719	95247896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_95248973_95250692_95251054_95252479
ENSMUSG00000020027.19_95247897_95253042_1	chr10	-	1472	3	FSM	ENSMUSG00000020027.19	ENSMUST00000135822.8	497	3	0	-975	0	385	multi-exon	FALSE	canonical	0	0	junction_2	247	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95253042	95247896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_95248973_95250692_95251054_95253007
ENSMUSG00000020027.19_95248478_95252719_1	chr10	-	1096	3	FSM	ENSMUSG00000020027.19	ENSMUST00000020215.16	2222	3	0	1126	0	0	multi-exon	FALSE	canonical	3	447	junction_2	23.5	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACACATGCCTCATAT	NA	False	NA	NA	False	TTTAAA	-6	NA	95252719	95248477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_95248973_95250692_95251054_95252479
ENSMUSG00000020048.14_86526704_86541326_1	chr10	-	2773	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	881.160535472031	4784	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	-40	True	AATAAA	-16	NA	86541326	86526703	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531823_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
ENSMUSG00000020056.17_88037046_88081871_1	chr10	+	804	7	NNC	ENSMUSG00000020056.17	novel	1052	7	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	144.466451315022	2650	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGTTTGTTGACCAAATA	NA	False	NA	16	True	AATAAA	-19	NA	88037045	88081871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055119_88055223_88070255_88070321_88081617
ENSMUSG00000020056.17_88037046_88081871_2	chr10	+	801	7	NNC	ENSMUSG00000020056.17	novel	838	7	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	159.335774039884	970	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGTTTGTTGACCAAATA	NA	False	NA	16	True	AATAAA	-19	NA	88037045	88081871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055114_88055223_88070255_88070321_88081625
ENSMUSG00000020056.17_88037046_88081871_3	chr10	+	805	7	NNC	ENSMUSG00000020056.17	novel	1052	7	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	135.967418482844	2165	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGTTTGTTGACCAAATA	NA	False	NA	16	True	AATAAA	-19	NA	88037045	88081871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_88037155_88037680_88037773_88049508_88049575_88051828_88051937_88055111_88055223_88070255_88070321_88081617
ENSMUSG00000020056.17_88037046_88081871_4	chr10	+	802	7	NNC	ENSMUSG00000020056.17	novel	1052	7	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	140.86331041908	2253	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGTTTGTTGACCAAATA	NA	False	NA	16	True	AATAAA	-19	NA	88037045	88081871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_88037155_88037673_88037773_88049518_88049575_88051828_88051937_88055111_88055223_88070255_88070321_88081617
ENSMUSG00000020059.10_88295431_88309098_1	chr10	+	1135	9	NNC	ENSMUSG00000020059.10	novel	1139	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	40.6138446222467	1162	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGGTTTCAGTATATC	NA	False	NA	4	True	AATAAA	-16	NA	88295430	88309098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_88295575_88298322_88298466_88299229_88299289_88299697_88299733_88302300_88302419_88303144_88303245_88305407_88305507_88308537_88308643_88308766
ENSMUSG00000020059.10_88295526_88302522_1	chr10	+	513	5	ISM	ENSMUSG00000020059.10	ENSMUST00000125612.2	1169	8	0	6576	0	-6575	5prime_fragment	FALSE	canonical	3	104	junction_4	9.69535971483266	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGGCTCTTTTTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	88295525	88302522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88302300
ENSMUSG00000020061.19_88354144_88362220_1	chr10	-	689	4	ISM	ENSMUSG00000020061.19	ENSMUST00000238199.2	3650	27	78667	-57	-3080	0	3prime_fragment	FALSE	canonical	1	1	junction_2	1.63299316185545	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTTGTGCTGTCCTACT	NA	False	NA	NA	False	ATTAAA	-14	NA	88362220	88354143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_88354432_88358828_88359016_88360830_88360968_88362143
ENSMUSG00000020064.10_63152483_63153657_1	chr10	+	698	2	ISM	ENSMUSG00000020064.10	ENSMUST00000219789.2	713	3	2217	-72	2217	0	3prime_fragment	FALSE	canonical	3	392	junction_1	0	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTAGTTTCTATGGTTG	NA	False	NA	17	True	AATAAA	-31	NA	63152482	63153657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_63152582_63153058
ENSMUSG00000020069.17_62851207_62859626_1	chr10	-	1384	10	NNC	ENSMUSG00000020069.17	novel	2213	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_6	144.393751788488	539	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5828	False	NA	-6	True	AATAAA	-15	NA	62859626	62851206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853837_62854005_62854538_62854678_62855171_62855307_62859498
ENSMUSG00000020069.17_62851207_62859673_1	chr10	-	1531	10	NNC	ENSMUSG00000020069.17	novel	2213	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_9	143.298789980504	1186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5781	False	NA	-6	True	AATAAA	-15	NA	62859673	62851206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859416
ENSMUSG00000020069.17_62851207_62859673_2	chr10	-	1310	9	FSM	ENSMUSG00000020069.17	ENSMUST00000140743.8	1633	9	323	0	0	0	multi-exon	FALSE	canonical	3	177	junction_7	118.49762655851	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5781	False	NA	-6	True	AATAAA	-15	NA	62859673	62851206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62855171_62855307_62859498
ENSMUSG00000020069.17_62851207_62859673_3	chr10	-	1404	10	FSM	ENSMUSG00000020069.17	ENSMUST00000118898.8	2168	10	0	764	0	0	multi-exon	FALSE	canonical	3	179	junction_6	104.074166337115	987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5781	False	NA	-6	True	AATAAA	-15	NA	62859673	62851206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864_62854005_62854538_62854678_62855171_62855307_62859498
ENSMUSG00000020069.17_62851207_62859673_4	chr10	-	1265	9	NIC	ENSMUSG00000020069.17	novel	2168	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	177	junction_7	135.128411150283	497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5781	False	NA	-6	True	AATAAA	-15	NA	62859673	62851206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864_62854005_62855171_62855307_62859498
ENSMUSG00000020069.17_62851207_62859673_5	chr10	-	1469	10	NNC	ENSMUSG00000020069.17	novel	2213	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	158.544070284014	1115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5781	False	NA	-6	True	AATAAA	-15	NA	62859673	62851206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859478
ENSMUSG00000020069.17_62851207_62859673_6	chr10	-	1449	10	FSM	ENSMUSG00000020069.17	ENSMUST00000020263.14	2213	10	0	764	0	0	multi-exon	FALSE	canonical	3	275	junction_6	80.8621750760186	1534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5781	False	NA	-6	True	AATAAA	-15	NA	62859673	62851206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859498
ENSMUSG00000020070.19_62851207_62859673_1	chr10	+	1486	10	Genic_Genomic	ENSMUSG00000020070.19	novel	4502	19	NA	NA	13171	6684	multi-exon	FALSE	non_canonical	0	0	junction_1	0	749	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGGATGGGAGGGGGGCG	NA	False	NA	NA	False	NA	NA	NA	62851206	62859673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864_62854005_62854538_62854678_62855171_62855307_62859416
ENSMUSG00000020070.19_62851207_62859673_2	chr10	+	1149	8	Genic_Genomic	ENSMUSG00000020070.19	novel	4502	19	NA	NA	13171	6684	multi-exon	FALSE	non_canonical	0	0	junction_1	0	293	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGGATGGGAGGGGGGCG	NA	False	NA	NA	False	NA	NA	NA	62851206	62859673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853302_62853390_62853864_62854005_62855171_62855307_62859498
ENSMUSG00000020070.19_62851207_62859673_3	chr10	+	1194	8	Genic_Genomic	ENSMUSG00000020070.19	novel	4502	19	NA	NA	13171	6684	multi-exon	FALSE	non_canonical	0	0	junction_1	0	306	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGGATGGGAGGGGGGCG	NA	False	NA	NA	False	NA	NA	NA	62851206	62859673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853302_62853390_62853819_62854005_62855171_62855307_62859498
ENSMUSG00000020070.19_62851207_62859673_4	chr10	+	1490	11	Genic_Genomic	ENSMUSG00000020070.19	novel	4502	19	NA	NA	13171	6684	multi-exon	FALSE	non_canonical	0	0	junction_1	0	522	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGGATGGGAGGGGGGCG	NA	False	NA	NA	False	NA	NA	NA	62851206	62859673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864_62854005_62854538_62854678_62855171_62855307_62855993_62856080_62859498
ENSMUSG00000020074.8_62588954_62592417_1	chr10	-	395	2	ISM	ENSMUSG00000020074.8	ENSMUST00000220236.2	589	3	3711	-98	3711	0	3prime_fragment	FALSE	canonical	3	375	junction_1	0	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCTGTAATTTCCAAGATA	9898	False	NA	-1	True	GATAAA	-30	NA	62592417	62588953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_62589193_62592261
ENSMUSG00000020074.8_62589052_62592417_1	chr10	-	297	2	ISM	ENSMUSG00000020074.8	ENSMUST00000220236.2	589	3	3711	0	3711	0	3prime_fragment	FALSE	canonical	3	375	junction_1	0	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAGAAAGAGAAGA	9898	False	NA	-99	True	AAAAAG	-39	NA	62592417	62589051	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_62589193_62592261
ENSMUSG00000020074.8_62617828_62628061_1	chr10	-	761	6	NNC	ENSMUSG00000020074.8	novel	4352	25	NA	NA	4	-1583	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	172.50437675607	190	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAACTTGTTGCTGTTCC	NA	False	NA	NA	False	NA	NA	NA	62628061	62617827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_62618072_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627908
ENSMUSG00000020074.8_62617828_62628061_2	chr10	-	675	6	NNC	ENSMUSG00000020074.8	novel	4352	25	NA	NA	4	-1583	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	144.804696056447	204	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAACTTGTTGCTGTTCC	NA	False	NA	NA	False	NA	NA	NA	62628061	62617827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_62618072_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
ENSMUSG00000020074.8_62617828_62628061_3	chr10	-	686	6	NNC	ENSMUSG00000020074.8	novel	4352	25	NA	NA	4	-1583	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	171.38891446065	192	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAACTTGTTGCTGTTCC	NA	False	NA	NA	False	NA	NA	NA	62628061	62617827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_62618072_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627983
ENSMUSG00000020076.8_62476080_62486997_1	chr10	-	1187	6	ISM	ENSMUSG00000020076.8	ENSMUST00000020270.6	2535	15	0	24286	0	194	5prime_fragment	FALSE	canonical	3	233	junction_5	19.5714077163601	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCAAAGCGTACTCTGAAT	8106	False	NA	NA	False	ATTAAA	-28	NA	62486997	62476079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62486803
ENSMUSG00000020077.15_62330207_62363230_1	chr10	-	1132	4	FSM	ENSMUSG00000020077.15	ENSMUST00000160987.8	1727	4	0	595	0	0	multi-exon	FALSE	canonical	2	4	junction_3	6.34209919681348	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTGGCTATGTGACATGG	NA	False	NA	-2	True	AATAAA	-21	NA	62363230	62330206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_62330886_62333557_62333703_62343420_62343616_62363117
ENSMUSG00000020078.17_62291051_62322527_2	chr10	-	2469	8	NIC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	111	junction_6	333.910900983958	1429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAGTTTGTAGTTTAAAT	5255	False	NA	-6	True	AATAAA	-17	NA	62322527	62291050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62316336_62316487_62322436
ENSMUSG00000020078.17_62291051_62322527_3	chr10	-	2538	9	NNC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	348.775155902768	1778	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAGTTTGTAGTTTAAAT	5255	False	NA	-6	True	AATAAA	-17	NA	62322527	62291050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_62292638_62294702_62294846_62299469_62299532_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
ENSMUSG00000020078.17_62291751_62322527_1	chr10	-	1769	8	NIC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	-2	-695	combination_of_known_junctions	FALSE	canonical	3	111	junction_6	333.910900983958	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATTTTTTAATTTAAG	5255	False	NA	-17	True	CATAAA	-15	NA	62322527	62291750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62316336_62316487_62322436
ENSMUSG00000020078.17_62292350_62322511_1	chr10	-	1154	8	NIC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	0	-1294	combination_of_known_junctions	FALSE	canonical	3	111	junction_6	333.910900983958	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTTCTTGGAAACACTGG	5271	False	NA	-20	True	ATTAAA	-27	NA	62322511	62292349	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62316336_62316487_62322436
ENSMUSG00000020080.9_62218916_62221620_1	chr10	-	950	2	ISM	ENSMUSG00000020080.9	ENSMUST00000020277.9	3517	18	36650	0	14520	0	3prime_fragment	FALSE	canonical	3	16	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGAGGTATTAAGCTTTC	9630	False	NA	NA	False	AATAAA	-22	NA	62221620	62218915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_62219702_62221456
ENSMUSG00000020083.14_61943989_61946792_1	chr10	-	1287	5	NNC	ENSMUSG00000020083.14	novel	1769	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	57.1505686760858	496	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCGGTGAATGACTGAC	NA	False	NA	-10	True	AATAAA	-21	NA	61946792	61943988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_61944903_61945315_61945426_61945662_61945792_61946014_61946094_61946737
ENSMUSG00000020083.14_61943989_61946792_2	chr10	-	1171	4	NNC	ENSMUSG00000020083.14	novel	1769	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	51.3290041464538	827	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCGGTGAATGACTGAC	NA	False	NA	-10	True	AATAAA	-21	NA	61946792	61943988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_61944903_61945662_61945786_61946014_61946094_61946737
ENSMUSG00000020083.14_61943989_61946792_3	chr10	-	1177	4	FSM	ENSMUSG00000020083.14	ENSMUST00000125704.8	1769	4	37	555	0	0	multi-exon	FALSE	canonical	3	105	junction_3	8.33999733546454	909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCGGTGAATGACTGAC	NA	False	NA	-10	True	AATAAA	-21	NA	61946792	61943988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_61944903_61945662_61945792_61946014_61946094_61946737
ENSMUSG00000020085.16_61551090_61564091_1	chr10	+	627	5	NNC	ENSMUSG00000020085.16	novel	1442	10	NA	NA	0	391	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	64.4069095672196	279	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTTGTTTGATTGTTTA	NA	False	NA	NA	False	AAAAAG	-15	NA	61551089	61564091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_61551132_61561634_61561834_61562143_61562260_61563459_61563546_61563907
ENSMUSG00000020085.16_61551090_61564091_2	chr10	+	661	5	ISM	ENSMUSG00000020085.16	ENSMUST00000099706.9	3086	9	-12	10335	0	391	5prime_fragment	FALSE	canonical	3	116	junction_1	28.6050694807756	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTTGTTTGATTGTTTA	NA	False	NA	NA	False	AAAAAG	-15	NA	61551089	61564091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907
ENSMUSG00000020086.7_61551090_61575040_1	chr10	-	1443	10	NIC	ENSMUSG00000020086.7	novel	2175	9	NA	NA	44886	23354	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGTCGGGGCGTGCCCAT	NA	False	NA	NA	False	NA	NA	NA	61575040	61551089	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574806
ENSMUSG00000020086.7_61574444_61619699_1	chr10	-	1948	9	FSM	ENSMUSG00000020086.7	ENSMUST00000020283.5	2175	9	227	0	227	0	multi-exon	FALSE	canonical	3	267	junction_7	26.0813031691286	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCAGCGTCTTTCTTATA	NA	False	NA	-26	True	NA	NA	NA	61619699	61574443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_61575242_61576913_61577089_61582411_61582502_61583450_61583551_61585054_61585166_61587455_61587654_61589240_61589348_61593502_61593734_61619561
ENSMUSG00000020088.11_61516109_61527226_1	chr10	+	743	7	FSM	ENSMUSG00000020088.11	ENSMUST00000020285.10	2613	7	20	1850	0	4	multi-exon	FALSE	canonical	3	1130	junction_5	94.5492229241233	2831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAGCTTCCTCATGGAC	NA	False	NA	30	True	AATAAA	-26	NA	61516108	61527226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_61516193_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
ENSMUSG00000020088.11_61516109_61527629_1	chr10	+	1146	7	FSM	ENSMUSG00000020088.11	ENSMUST00000020285.10	2613	7	20	1447	0	312	multi-exon	FALSE	canonical	3	1130	junction_5	94.5492229241233	2932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCATTGGGCTCTGCTGTG	NA	False	NA	NA	False	AGTAAA	-37	NA	61516108	61527629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_61516193_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
ENSMUSG00000020088.11_61516144_61527226_1	chr10	+	702	7	NNC	ENSMUSG00000020088.11	novel	897	8	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	493.044510048422	1294	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAGCTTCCTCATGGAC	NA	False	NA	30	True	AATAAA	-26	NA	61516143	61527226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_61516193_61520658_61520733_61520844_61520965_61521338_61521399_61522153_61522258_61525552_61525685_61527063
ENSMUSG00000020088.11_61516144_61527226_2	chr10	+	758	8	NIC	ENSMUSG00000020088.11	novel	897	8	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	31	junction_2	573.138691054507	985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAGCTTCCTCATGGAC	NA	False	NA	30	True	AATAAA	-26	NA	61516143	61527226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_61516193_61517877_61517928_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
ENSMUSG00000020089.9_61484400_61509846_1	chr10	+	1194	11	FSM	ENSMUSG00000020089.9	ENSMUST00000020286.7	1364	11	69	101	0	-101	multi-exon	FALSE	canonical	3	3777	junction_3	128.102654148929	13292	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGTGGGGACATGGAAGTC	2121	False	NA	-86	True	ATTAAA	-15	NA	61484399	61509846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
ENSMUSG00000020107.11_59823730_59838935_1	chr10	-	1331	4	FSM	ENSMUSG00000020107.11	ENSMUST00000182898.8	1852	4	22	499	-2	0	multi-exon	FALSE	canonical	3	296	junction_3	30.5650490302604	4286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGCTGTGCGTATCCTTT	NA	False	NA	-4	True	AATAAA	-18	NA	59838935	59823729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838777
ENSMUSG00000020107.11_59824226_59838817_1	chr10	-	717	4	FSM	ENSMUSG00000020107.11	ENSMUST00000182898.8	1852	4	140	995	0	0	multi-exon	FALSE	canonical	3	296	junction_3	30.5650490302604	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTGGGGATCAGATGGAG	NA	False	NA	NA	False	NA	NA	NA	59838817	59824225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838777
ENSMUSG00000020107.11_59824226_59838935_1	chr10	-	834	4	NNC	ENSMUSG00000020107.11	novel	1852	4	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	169.776323437634	2694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTGGGGATCAGATGGAG	NA	False	NA	NA	False	NA	NA	NA	59838935	59824225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_59824661_59826654_59826730_59832269_59832432_59838773
ENSMUSG00000020107.11_59824226_59838935_2	chr10	-	835	4	FSM	ENSMUSG00000020107.11	ENSMUST00000182898.8	1852	4	22	995	-2	0	multi-exon	FALSE	canonical	3	296	junction_3	30.5650490302604	3237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTGGGGATCAGATGGAG	NA	False	NA	NA	False	NA	NA	NA	59838935	59824225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838777
ENSMUSG00000020109.14_59715448_59733838_1	chr10	+	1739	9	FSM	ENSMUSG00000020109.14	ENSMUST00000146590.8	3070	9	51	1280	0	2	multi-exon	FALSE	canonical	3	91	junction_8	64.4659551623956	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGGGATTCAATTAAGAT	NA	False	NA	22	True	TTTAAA	-5	NA	59715447	59733838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732324_59733312
ENSMUSG00000020109.14_59715448_59733838_2	chr10	+	1733	9	FSM	ENSMUSG00000020109.14	ENSMUST00000020309.7	2238	9	0	505	0	2	multi-exon	FALSE	canonical	3	36	junction_8	81.8458917722814	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGGGATTCAATTAAGAT	NA	False	NA	22	True	TTTAAA	-5	NA	59715447	59733838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732318_59733312
ENSMUSG00000020111.16_59538385_59569143_1	chr10	+	626	3	ISM	ENSMUSG00000020111.16	ENSMUST00000167872.8	4699	4	0	11575	0	-7437	5prime_fragment	FALSE	canonical	3	180	junction_2	29.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACTTTTCCTGGGGAGT	NA	False	NA	NA	False	NA	NA	NA	59538384	59569143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_59538510_59563778_59563941_59568804
ENSMUSG00000020114.13_119038550_119045961_1	chr10	-	1087	5	ISM	ENSMUSG00000020114.13	ENSMUST00000020315.13	7766	15	29999	3390	-1847	-3390	3prime_fragment	FALSE	canonical	3	758	junction_4	26.7441582406327	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCATGGATTTCTTGGTT	NA	False	NA	-29	True	ATTAAA	-15	NA	119045961	119038549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_119039111_119042620_119042729_119043931_119044097_119044177_119044348_119045878
ENSMUSG00000020115.4_121406132_121422652_1	chr10	-	1032	7	NNC	ENSMUSG00000020115.4	novel	442	4	NA	NA	-6	1674	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	53.7817089931347	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAGACTTGTGGAGTGAAG	3918	False	NA	NA	False	AGTAAA	-19	NA	121422652	121406131	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_121406351_121406535_121406697_121407747_121407930_121412178_121412309_121414484_121414626_121420100_121420247_121422599
ENSMUSG00000020116.8_17153198_17161568_1	chr11	-	1538	7	NNC	ENSMUSG00000020116.8	novel	1544	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	558.345696380537	2249	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCAGTCTCTTTTTCTAA	NA	False	NA	48	True	AGTAAA	-19	NA	17161568	17153197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_17154002_17154500_17154572_17158788_17158907_17159076_17159138_17159316_17159395_17160987_17161138_17161312
ENSMUSG00000020116.8_17153446_17161568_1	chr11	-	1296	7	FSM	ENSMUSG00000020116.8	ENSMUST00000020317.8	1544	7	0	248	0	-248	multi-exon	FALSE	canonical	3	1392	junction_5	81.0276016072438	818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGATGTTAAAATATTT	NA	False	NA	-21	True	AATAAA	-18	NA	17161568	17153445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_17154002_17154500_17154572_17158788_17158907_17159076_17159138_17159310_17159395_17160987_17161138_17161312
ENSMUSG00000020116.8_17153446_17161568_2	chr11	-	1290	7	NNC	ENSMUSG00000020116.8	novel	1544	7	NA	NA	0	-248	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	558.345696380537	799	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGATGTTAAAATATTT	NA	False	NA	-21	True	AATAAA	-18	NA	17161568	17153445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_17154002_17154500_17154572_17158788_17158907_17159076_17159138_17159316_17159395_17160987_17161138_17161312
ENSMUSG00000020124.11_122949133_122957495_1	chr10	-	568	3	ISM	ENSMUSG00000020124.11	ENSMUST00000219937.2	1587	9	6295	0	-2109	0	3prime_fragment	FALSE	canonical	3	594	junction_1	23	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTTTTCTTTAATTTTT	NA	False	NA	2	True	AATAAA	-32	NA	122957495	122949132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_122949593_122955013_122955103_122957476
ENSMUSG00000020124.11_122949133_123032831_1	chr10	-	3147	21	FSM	ENSMUSG00000020124.11	ENSMUST00000020334.9	4666	21	27	1492	0	0	multi-exon	TRUE	canonical	3	255	junction_15	80.7788802843912	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTTTTCTTTAATTTTT	NA	False	NA	2	True	AATAAA	-32	NA	123032831	122949132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
ENSMUSG00000020130.10_115034363_115087372_1	chr10	-	3166	17	FSM	ENSMUSG00000020130.10	ENSMUST00000020339.10	3752	17	0	586	0	-586	multi-exon	FALSE	canonical	3	391	junction_16	42.5718143259129	734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGTGTTTTCAGTTACA	NA	False	NA	-1	True	ATTAAA	-15	NA	115087372	115034362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753_115076853_115087286
ENSMUSG00000020130.10_115034766_115087372_1	chr10	-	2763	17	FSM	ENSMUSG00000020130.10	ENSMUST00000020339.10	3752	17	0	989	0	535	multi-exon	FALSE	canonical	3	391	junction_16	42.5718143259129	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGCTGATTCAACAAAATT	NA	False	NA	NA	False	AATAAA	-19	NA	115087372	115034765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753_115076853_115087286
ENSMUSG00000020130.10_115070299_115087372_1	chr10	-	376	4	NNC	ENSMUSG00000020130.10	novel	3752	17	NA	NA	0	-5194	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	208.487143222044	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCCTGGTGTTGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	115087372	115070298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_115070415_115075176_115075252_115076753_115076853_115087286
ENSMUSG00000020133.9_80154542_80156371_1	chr10	-	962	2	NNC	ENSMUSG00000020133.9	novel	1649	2	NA	NA	0	-454	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	87	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTTCTCCCTTAAGCCA	8717	False	NA	-16	True	ATTAAA	-18	NA	80156371	80154541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_80155382_80156249
ENSMUSG00000020133.9_80154542_80156371_2	chr10	-	1186	2	NNC	ENSMUSG00000020133.9	novel	1649	2	NA	NA	0	-454	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1285	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTTCTCCCTTAAGCCA	8717	False	NA	-16	True	ATTAAA	-18	NA	80156371	80154541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_80155373_80156016
ENSMUSG00000020137.6_115208065_115220409_2	chr10	-	1283	3	FSM	ENSMUSG00000020137.6	ENSMUST00000218842.2	4970	3	-69	3756	-61	-2688	multi-exon	FALSE	canonical	3	8	junction_1	6.5	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATGTATTTTGTATGAAT	2299	False	NA	NA	False	ATTAAA	-17	NA	115220409	115208064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_115208852_115212256_115212453_115220109
ENSMUSG00000020137.6_115208065_115220676_1	chr10	-	1550	3	FSM	ENSMUSG00000020137.6	ENSMUST00000218842.2	4970	3	-336	3756	-328	-2688	multi-exon	FALSE	canonical	3	8	junction_1	6.5	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATGTATTTTGTATGAAT	2032	False	NA	NA	False	ATTAAA	-17	NA	115220676	115208064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_115208852_115212256_115212453_115220109
ENSMUSG00000020142.13_20257846_20282713_1	chr11	-	1516	6	ISM	ENSMUSG00000020142.13	ENSMUST00000109594.8	3926	8	0	5666	0	-5641	5prime_fragment	FALSE	canonical	3	286	junction_2	12.5698050899765	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATGTGTGTGTGTCTGCG	7761	False	NA	NA	False	NA	NA	NA	20282713	20257845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_20258087_20258403_20258638_20263915_20264083_20268659_20268723_20270191_20270235_20281945
ENSMUSG00000020142.13_20281481_20282713_1	chr11	-	923	2	NNC	ENSMUSG00000020142.13	novel	3926	8	NA	NA	0	-29276	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGTTGCCCAGCTACGTG	7761	False	NA	NA	False	AATAAA	-21	NA	20282713	20281480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_20281636_20281945
ENSMUSG00000020149.18_20151439_20175464_1	chr11	+	1428	6	FSM	ENSMUSG00000020149.18	ENSMUST00000020358.12	2827	6	7	1392	0	0	multi-exon	FALSE	canonical	3	1848	junction_1	130.08397287906	6998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATGGTGATAAGTATTG	NA	False	NA	16	True	AATAAA	-29	NA	20151438	20175464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
ENSMUSG00000020149.18_20151602_20175464_1	chr11	+	1265	6	FSM	ENSMUSG00000020149.18	ENSMUST00000163483.2	2657	6	0	1392	0	0	multi-exon	FALSE	canonical	3	1848	junction_1	130.08397287906	4084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATGGTGATAAGTATTG	NA	False	NA	16	True	AATAAA	-29	NA	20151601	20175464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
ENSMUSG00000020150.14_80093985_80096802_1	chr10	-	746	6	NNC	ENSMUSG00000020150.14	novel	988	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	11.4821600755259	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTTGGTTGGCAGTGAG	9293	False	NA	NA	False	AATAAA	-18	NA	80096802	80093984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_80094292_80094773_80094885_80095010_80095079_80095434_80095499_80095601_80095748_80096752
ENSMUSG00000020152.8_20014670_20062887_1	chr11	-	1233	9	NNC	ENSMUSG00000020152.8	novel	3631	9	NA	NA	-20	-2366	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	269.125174175513	1247	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGCCTCTAATGCTTTTT	1362	False	NA	-3	True	GATAAA	-19	NA	20062887	20014669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044235_20044446_20050822_20050934_20062804
ENSMUSG00000020153.15_80085286_80092627_1	chr10	+	747	8	NNC	ENSMUSG00000020153.15	novel	758	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	941.593395499873	2904	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTGTTCTGTGTGGAC	9692	False	NA	24	True	AATAAA	-15	NA	80085285	80092627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80085326_80088230_80088268_80088912_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091840_80092469
ENSMUSG00000020153.15_80085286_80092627_10	chr10	+	757	7	NNC	ENSMUSG00000020153.15	novel	758	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	838.349453125339	1105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTGTTCTGTGTGGAC	9692	False	NA	24	True	AATAAA	-15	NA	80085285	80092627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090673_80090899_80091757_80091847_80092469
ENSMUSG00000020153.15_80085286_80092627_2	chr10	+	753	8	NNC	ENSMUSG00000020153.15	novel	758	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	794.476621456425	5690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTGTTCTGTGTGGAC	9692	False	NA	24	True	AATAAA	-15	NA	80085285	80092627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80085326_80088230_80088272_80088917_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
ENSMUSG00000020153.15_80085286_80092627_3	chr10	+	752	8	NNC	ENSMUSG00000020153.15	novel	758	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	768.810531049791	12269	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTGTTCTGTGTGGAC	9692	False	NA	24	True	AATAAA	-15	NA	80085285	80092627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80085326_80088230_80088268_80088907_80088992_80089500_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
ENSMUSG00000020153.15_80085286_80092627_4	chr10	+	749	8	NNC	ENSMUSG00000020153.15	novel	758	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	794.476621456425	3291	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTGTTCTGTGTGGAC	9692	False	NA	24	True	AATAAA	-15	NA	80085285	80092627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80085326_80088230_80088268_80088917_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
ENSMUSG00000020153.15_80085286_80092627_5	chr10	+	754	8	NNC	ENSMUSG00000020153.15	novel	758	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	791.752254592976	10209	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTGTTCTGTGTGGAC	9692	False	NA	24	True	AATAAA	-15	NA	80085285	80092627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090678_80090854_80090923_80090971_80091757_80091847_80092469
ENSMUSG00000020153.15_80085286_80092627_6	chr10	+	747	8	NNC	ENSMUSG00000020153.15	novel	758	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	903.963291651304	3887	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTGTTCTGTGTGGAC	9692	False	NA	24	True	AATAAA	-15	NA	80085285	80092627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80085326_80088230_80088268_80088912_80088992_80089500_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
ENSMUSG00000020153.15_80085286_80092627_7	chr10	+	675	7	NIC	ENSMUSG00000020153.15	novel	758	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	164	junction_2	752.472295540212	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTGTTCTGTGTGGAC	9692	False	NA	24	True	AATAAA	-15	NA	80085285	80092627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_80085326_80088230_80088268_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
ENSMUSG00000020153.15_80085286_80092627_8	chr10	+	715	8	NNC	ENSMUSG00000020153.15	novel	758	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_7	789.099667795067	733	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTGTTCTGTGTGGAC	9692	False	NA	24	True	AATAAA	-15	NA	80085285	80092627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092513
ENSMUSG00000020153.15_80085286_80092627_9	chr10	+	739	7	NNC	ENSMUSG00000020153.15	novel	758	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1017.70729529118	836	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTGTTCTGTGTGGAC	9692	False	NA	24	True	AATAAA	-15	NA	80085285	80092627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80085326_80088883_80088992_80089500_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
ENSMUSG00000020166.16_116321071_116417406_2	chr10	-	2390	13	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_9	144.203246804255	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCAGTGTTGGCTTTGAT	NA	False	NA	-6	True	AATAAA	-18	NA	116417406	116321070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116353221_116353289_116363731_116363855_116384937_116385081_116417357
ENSMUSG00000020166.16_116321692_116417406_1	chr10	-	1769	13	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_9	144.203246804255	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTGAAGATCCTTC	NA	False	NA	-12	True	AATAAA	-19	NA	116417406	116321691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116353221_116353289_116363731_116363855_116384937_116385081_116417357
ENSMUSG00000020171.9_117051127_117060396_1	chr10	-	1218	6	NIC	ENSMUSG00000020171.9	novel	1327	7	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	135.207987929708	793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTGTCTGCCTCTTGTG	3387	False	NA	-14	True	AATAAA	-14	NA	117060396	117051126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_117051742_117053116_117053205_117056237_117056333_117056436_117056504_117058078_117058199_117060163
ENSMUSG00000020171.9_117051509_117060396_1	chr10	-	929	7	FSM	ENSMUSG00000020171.9	ENSMUST00000020382.8	1327	7	16	382	-1	-176	multi-exon	FALSE	canonical	3	274	junction_4	39.2074256005444	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTTCTGGGAGGAGCTG	3387	False	NA	NA	False	NA	NA	NA	117060396	117051508	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_117051742_117053116_117053205_117053333_117053427_117056237_117056333_117056436_117056504_117058078_117058199_117060163
ENSMUSG00000020180.11_75353848_75371297_1	chr10	+	643	4	NNC	ENSMUSG00000020180.11	novel	3036	4	NA	NA	0	45	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1771.60611373472	24896	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGTGAGGCTTTTTTG	1865	False	NA	30	True	AATAAA	-17	NA	75353847	75371297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_75353960_75355147_75355295_75368010_75368204_75371106
ENSMUSG00000020180.11_75353848_75371297_2	chr10	+	655	4	FSM	ENSMUSG00000020180.11	ENSMUST00000020397.11	3036	4	463	1918	0	45	multi-exon	FALSE	canonical	3	3512	junction_3	116.998575489904	26369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGTGAGGCTTTTTTG	1865	False	NA	30	True	AATAAA	-17	NA	75353847	75371297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_75353960_75355147_75355295_75368010_75368204_75371094
ENSMUSG00000020182.17_11764101_11772588_1	chr11	-	892	5	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	333	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_4	40.5362492098122	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	NA	False	NA	-1	True	AATAAA	-21	NA	11772588	11764100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11772532
ENSMUSG00000020182.17_11764101_11772953_1	chr11	-	1011	5	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	42.6438741204408	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	NA	False	NA	-1	True	AATAAA	-21	NA	11772953	11764100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11772778
ENSMUSG00000020182.17_11764101_11779329_2	chr11	-	1084	6	ISM	ENSMUSG00000020182.17	ENSMUST00000109659.9	1954	15	61079	-2	-6408	0	3prime_fragment	FALSE	canonical	3	63	junction_5	20.3666393889615	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	NA	False	NA	-1	True	AATAAA	-21	NA	11779329	11764100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101
ENSMUSG00000020182.17_11814377_11823239_1	chr11	-	377	3	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	7390	-2536	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	28.5	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTGTATTTACTTGACT	NA	False	NA	NA	False	AATAAA	-21	NA	11823239	11814376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_11814513_11814893_11815029_11823133
ENSMUSG00000020185.17_110581329_110590306_1	chr10	+	670	3	FSM	ENSMUSG00000020185.17	ENSMUST00000174857.8	2865	3	3	2192	0	-132	multi-exon	FALSE	canonical	3	33	junction_1	1.5	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCGTTCGTTAAGCATGGC	NA	False	NA	NA	False	TTTAAA	-27	NA	110581328	110590306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_110581541_110582192_110582286_110589941
ENSMUSG00000020186.8_110756054_110775375_1	chr10	+	872	6	FSM	ENSMUSG00000020186.8	ENSMUST00000020403.7	1384	6	404	108	0	0	multi-exon	FALSE	canonical	3	157	junction_1	20.350921355064	2670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACCTTTCAGAGGAGCTG	NA	False	NA	31	True	AATAAA	-32	NA	110756053	110775375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_110756116_110767815_110767929_110771008_110771178_110773597_110773728_110774497_110774592_110775071
ENSMUSG00000020186.8_110756054_110775488_1	chr10	+	985	6	FSM	ENSMUSG00000020186.8	ENSMUST00000020403.7	1384	6	404	-5	0	5	multi-exon	FALSE	canonical	3	157	junction_1	20.350921355064	2811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAATCAATTCCTTTATGC	NA	False	NA	NA	False	ATTAAA	-26	NA	110756053	110775488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_110756116_110767815_110767929_110771008_110771178_110773597_110773728_110774497_110774592_110775071
ENSMUSG00000020186.8_110767489_110775375_1	chr10	+	945	6	NNC	ENSMUSG00000020186.8	novel	736	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	81.7620939066509	2040	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACCTTTCAGAGGAGCTG	NA	False	NA	31	True	AATAAA	-32	NA	110767488	110775375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_110767624_110767815_110767929_110771008_110771178_110773597_110773728_110774497_110774592_110775071
ENSMUSG00000020196.11_75581113_75600104_1	chr10	-	1587	10	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	46	99167	0	4787	5prime_fragment	FALSE	canonical	3	63	junction_8	9.01986833004551	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGAAAGTGGATTTCCA	NA	False	NA	NA	False	NA	NA	NA	75600104	75581112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_75581232_75582321_75582609_75583659_75583810_75585877_75586008_75587269_75587451_75589210_75589346_75590084_75590199_75590645_75590739_75591202_75591335_75599858
ENSMUSG00000020211.16_80631933_80634074_1	chr10	+	942	5	NIC	ENSMUSG00000020211.16	novel	2213	9	NA	NA	-2099	-4161	intron_retention	FALSE	non_canonical	0	0	junction_1	0	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGCCAGCGCCACAAAAGT	2253	False	NA	NA	False	NA	NA	NA	80631932	80634074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_80632489_80632565_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUSG00000020211.16_80631933_80634074_2	chr10	+	1019	4	NIC	ENSMUSG00000020211.16	novel	2213	9	NA	NA	-2099	-4161	intron_retention	FALSE	non_canonical	0	0	junction_1	0	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGCCAGCGCCACAAAAGT	2253	False	NA	NA	False	NA	NA	NA	80631932	80634074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUSG00000020211.16_80631933_80634074_3	chr10	+	864	6	NNC	ENSMUSG00000020211.16	novel	2213	9	NA	NA	-2099	-4161	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1895	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGCCAGCGCCACAAAAGT	2253	False	NA	NA	False	NA	NA	NA	80631932	80634074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80632357_80632424_80632489_80632565_80632657_80633606_80633664_80633743_80633812_80633914
ENSMUSG00000020211.16_80631933_80634074_4	chr10	+	866	6	NNC	ENSMUSG00000020211.16	novel	2213	9	NA	NA	-2099	-4161	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1012	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGCCAGCGCCACAAAAGT	2253	False	NA	NA	False	NA	NA	NA	80631932	80634074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633743_80633804_80633914
ENSMUSG00000020211.16_80631933_80634074_6	chr10	+	874	6	NNC	ENSMUSG00000020211.16	novel	2213	9	NA	NA	-2099	-4161	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGCCAGCGCCACAAAAGT	2253	False	NA	NA	False	NA	NA	NA	80631932	80634074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633743_80633804_80633906
ENSMUSG00000020211.16_80631933_80634074_7	chr10	+	883	4	NIC	ENSMUSG00000020211.16	novel	2213	9	NA	NA	-2099	-4161	intron_retention	FALSE	non_canonical	0	0	junction_1	0	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGCCAGCGCCACAAAAGT	2253	False	NA	NA	False	NA	NA	NA	80631932	80634074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_80632357_80632424_80632657_80633606_80633674_80633914
ENSMUSG00000020211.16_80631933_80634074_8	chr10	+	770	5	NIC	ENSMUSG00000020211.16	novel	2213	9	NA	NA	-2099	-4161	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGCCAGCGCCACAAAAGT	2253	False	NA	NA	False	NA	NA	NA	80631932	80634074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_80632357_80632424_80632453_80632565_80632657_80633606_80633674_80633914
ENSMUSG00000020211.16_80631933_80634128_1	chr10	+	998	5	NIC	ENSMUSG00000020211.16	novel	2213	9	NA	NA	-2099	-4107	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCGCCTGCGCGTTGTTG	2253	False	NA	NA	False	NA	NA	NA	80631932	80634128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_80632357_80632424_80632489_80632565_80632657_80633606_80633812_80633914
ENSMUSG00000020211.16_80631933_80634394_1	chr10	+	1090	5	NIC	ENSMUSG00000020211.16	novel	2213	9	NA	NA	-2099	-3841	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCACTCTGCGCCCCGACGC	2253	False	NA	NA	False	NA	NA	NA	80631932	80634394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_80632357_80632424_80632453_80632565_80632657_80633606_80633674_80633914
ENSMUSG00000020211.16_80634566_80640758_1	chr10	+	1679	9	FSM	ENSMUSG00000020211.16	ENSMUST00000148665.8	2213	9	534	0	0	0	multi-exon	FALSE	canonical	3	1171	junction_7	118.037004261376	1192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGTCTGCTGTGTGTTT	4886	False	NA	29	True	ATTAAA	-17	NA	80634565	80640758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80634640_80637029_80637193_80637289_80637362_80638231_80638279_80638625_80638736_80639293_80639344_80639416_80639558_80639653_80639723_80639805
ENSMUSG00000020211.16_80634566_80640758_2	chr10	+	1698	9	FSM	ENSMUSG00000020211.16	ENSMUST00000151928.8	781	9	0	-917	0	0	multi-exon	FALSE	canonical	3	55	junction_7	448.68263770175	1181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGTCTGCTGTGTGTTT	4886	False	NA	29	True	ATTAAA	-17	NA	80634565	80640758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80634640_80637029_80637193_80637289_80637362_80638231_80638279_80638625_80638736_80639293_80639344_80639416_80639558_80639634_80639723_80639805
ENSMUSG00000020211.16_80634566_80640758_3	chr10	+	1625	9	NNC	ENSMUSG00000020211.16	novel	2213	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	103	junction_1	429.244230450451	1078	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGTCTGCTGTGTGTTT	4886	False	NA	29	True	ATTAAA	-17	NA	80634565	80640758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80634586_80637029_80637193_80637289_80637362_80638231_80638279_80638625_80638736_80639293_80639344_80639416_80639558_80639653_80639723_80639805
ENSMUSG00000020219.8_80735500_80736626_1	chr10	-	832	3	FSM	ENSMUSG00000020219.8	ENSMUST00000020440.7	1225	3	177	216	-7	-216	multi-exon	FALSE	canonical	3	3643	junction_2	39.5	27252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGTCTGCCCAGCACTT	5625	False	NA	-1	True	NA	NA	NA	80736626	80735499	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80736094_80736315_80736385_80736457
ENSMUSG00000020219.8_80735738_80736626_1	chr10	-	594	3	FSM	ENSMUSG00000020219.8	ENSMUST00000020440.7	1225	3	177	454	-7	0	multi-exon	FALSE	canonical	3	3643	junction_2	39.5	26001	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCACCTCACTGCTTCA	5625	False	NA	-7	True	AATAAA	-25	NA	80736626	80735737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80736094_80736315_80736385_80736457
ENSMUSG00000020224.16_120062975_120067567_1	chr10	+	718	3	NNC	ENSMUSG00000020224.16	novel	1664	3	NA	NA	0	98	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	632	11926	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTATGCTGAAGTTGT	NA	False	NA	7	True	AATAAA	-19	NA	120062974	120067567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_120063029_120063878_120064083_120067107
ENSMUSG00000020224.16_120062975_120067567_2	chr10	+	1170	3	FSM	ENSMUSG00000020224.16	ENSMUST00000130198.3	1463	3	-116	409	0	98	multi-exon	FALSE	canonical	3	35	junction_1	477.5	7647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTATGCTGAAGTTGT	NA	False	NA	7	True	AATAAA	-19	NA	120062974	120067567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_120063455_120063878_120064109_120067107
ENSMUSG00000020224.16_120062975_120067976_1	chr10	+	1579	3	FSM	ENSMUSG00000020224.16	ENSMUST00000130198.3	1463	3	-116	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	477.5	18134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGGAGTTTGACATTT	NA	False	NA	8	True	AATAAA	-17	NA	120062974	120067976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_120063455_120063878_120064109_120067107
ENSMUSG00000020224.16_120062975_120067976_2	chr10	+	1306	4	FSM	ENSMUSG00000020224.16	ENSMUST00000220107.2	767	4	-32	-507	0	0	multi-exon	FALSE	canonical	3	16	junction_3	586.90373997786	14949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGGAGTTTGACATTT	NA	False	NA	8	True	AATAAA	-17	NA	120062974	120067976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_120063029_120063878_120064109_120066314_120066468_120067107
ENSMUSG00000020227.11_120037495_120039113_1	chr10	-	810	4	NNC	ENSMUSG00000020227.11	novel	3097	12	NA	NA	-1078	-36614	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	30	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGCCCGCCCTGCGACG	NA	False	NA	NA	False	NA	NA	NA	120039113	120037494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_120037755_120038006_120038101_120038417_120038613_120038852
ENSMUSG00000020228.12_119946789_119948830_1	chr10	-	586	2	ISM	ENSMUSG00000020228.12	ENSMUST00000154501.2	3095	12	-60	26114	-60	-26114	5prime_fragment	FALSE	canonical	3	65	junction_1	0	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTACACCAAGGGAGCAG	NA	False	NA	NA	False	GATAAA	-5	NA	119948830	119946788	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_119947134_119948589
ENSMUSG00000020232.18_81181885_81186261_1	chr10	-	1697	9	NIC	ENSMUSG00000020232.18	novel	1463	10	NA	NA	-1	0	intron_retention	FALSE	canonical	3	169	junction_8	141.437044298868	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	False	NA	-11	True	AATAAA	-17	NA	81186261	81181884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81185323_81185967_81186024_81186240
ENSMUSG00000020246.14_82535045_82575312_1	chr10	+	2283	14	ISM	ENSMUSG00000020246.14	ENSMUST00000020478.14	3422	15	204	2950	0	-1917	5prime_fragment	FALSE	canonical	3	69	junction_7	9.81666256450355	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTATATGGATTCTTCCT	NA	False	NA	17	True	AATAAA	-26	NA	82535044	82575312	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_82535141_82536752_82536902_82538276_82538438_82544842_82545052_82545797_82545883_82547668_82547776_82547883_82548073_82559452_82559621_82560177_82560231_82564086_82564262_82568436_82568511_82570183_82570316_82574112_82574299_82574813
ENSMUSG00000020248.19_82584535_82597747_1	chr10	-	2413	7	ISM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	2231	0	1733	0	3prime_fragment	FALSE	canonical	3	756	junction_4	66.4540359112138	733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCGCCTTGCGTGTGGGT	NA	False	NA	-4	True	AATAAA	-43	NA	82597747	82584534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666
ENSMUSG00000020248.19_82585838_82599978_1	chr10	-	1251	8	FSM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	0	1303	0	470	multi-exon	FALSE	canonical	3	756	junction_4	63.4932103071032	3297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGAATGAAAGTTGCCTT	NA	False	NA	NA	False	AATAAA	-19	NA	82599978	82585837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
ENSMUSG00000020248.19_82585838_82599978_2	chr10	-	1241	8	NNC	ENSMUSG00000020248.19	novel	2554	8	NA	NA	0	470	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	315.57779855176	2120	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGAATGAAAGTTGCCTT	NA	False	NA	NA	False	AATAAA	-19	NA	82599978	82585837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_82586282_82586571_82586652_82587217_82587290_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
ENSMUSG00000020248.19_82585838_82599978_3	chr10	-	1266	8	NNC	ENSMUSG00000020248.19	novel	2554	8	NA	NA	0	470	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_4	315.938446601259	2565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGAATGAAAGTTGCCTT	NA	False	NA	NA	False	AATAAA	-19	NA	82599978	82585837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588454_82590798_82590930_82592535_82592630_82597666_82597748_82599837
ENSMUSG00000020248.19_82586015_82599935_1	chr10	-	1046	8	NNC	ENSMUSG00000020248.19	novel	2554	8	NA	NA	0	293	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_4	315.938446601259	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGAGTTTGTTGCTCTGTA	NA	False	NA	-6	True	ATTAAA	-17	NA	82599935	82586014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588454_82590798_82590930_82592535_82592630_82597666_82597748_82599837
ENSMUSG00000020248.19_82586015_82599978_1	chr10	-	1074	8	FSM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	0	1480	0	293	multi-exon	FALSE	canonical	3	756	junction_4	63.4932103071032	1441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGAGTTTGTTGCTCTGTA	NA	False	NA	-6	True	ATTAAA	-17	NA	82599978	82586014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
ENSMUSG00000020255.9_83196085_83201776_1	chr10	+	586	4	FSM	ENSMUSG00000020255.9	ENSMUST00000020488.9	123179	4	0	122593	0	-122593	multi-exon	FALSE	canonical	3	119	junction_1	5.24933858267454	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCAGTGAAATGACCCAC	NA	False	NA	NA	False	AGTAAA	-6	NA	83196084	83201776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_83196238_83197910_83197998_83200242_83200380_83201567
ENSMUSG00000020255.9_83196085_83201995_1	chr10	+	805	4	FSM	ENSMUSG00000020255.9	ENSMUST00000020488.9	123179	4	0	122374	0	-122374	multi-exon	FALSE	canonical	3	119	junction_1	5.24933858267454	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTTTGCTCTAGAGTGTG	NA	False	NA	NA	False	AAGAAA	-21	NA	83196084	83201995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_83196238_83197910_83197998_83200242_83200380_83201567
ENSMUSG00000020255.9_83196085_83202392_1	chr10	+	1202	4	FSM	ENSMUSG00000020255.9	ENSMUST00000020488.9	123179	4	0	121977	0	-121977	multi-exon	FALSE	canonical	3	119	junction_1	5.24933858267454	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAATGCCTCCAGTTCTA	NA	False	NA	3	True	NA	NA	NA	83196084	83202392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_83196238_83197910_83197998_83200242_83200380_83201567
ENSMUSG00000020256.15_83326256_83369945_1	chr10	-	3026	23	FSM	ENSMUSG00000020256.15	ENSMUST00000020497.14	6027	23	59	2942	0	-963	multi-exon	FALSE	canonical	3	47	junction_9	8.2773463628096	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTAACCTCTTTTTAAC	NA	False	NA	-17	True	AAGAAA	-26	NA	83369945	83326255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_83326499_83328338_83328539_83329292_83329399_83331732_83331899_83333335_83333435_83335702_83335803_83337757_83337852_83338305_83338394_83339805_83339912_83339989_83340061_83342461_83342613_83343878_83344007_83344476_83344597_83348153_83348302_83349446_83349539_83350318_83350445_83351911_83352047_83354207_83354298_83354496_83354599_83356133_83356300_83358565_83358801_83363168_83363314_83369830
ENSMUSG00000020265.17_77442059_77452544_1	chr10	+	881	4	FSM	ENSMUSG00000020265.17	ENSMUST00000020501.15	2630	4	128	1621	0	0	multi-exon	FALSE	canonical	3	1171	junction_3	110.14031454871	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGCTTTGTCAAACATA	NA	False	NA	5	True	ATTAAA	-20	NA	77442058	77452544	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_77442176_77445645_77445775_77449813_77449886_77451981
ENSMUSG00000020265.17_77442059_77453256_1	chr10	+	1593	4	FSM	ENSMUSG00000020265.17	ENSMUST00000020501.15	2630	4	128	909	0	0	multi-exon	FALSE	canonical	3	1171	junction_3	110.14031454871	2376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTGGCCTATGTTAAAC	NA	False	NA	25	True	AGTAAA	-18	NA	77442058	77453256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_77442176_77445645_77445775_77449813_77449886_77451981
ENSMUSG00000020268.15_54731496_54751423_1	chr11	-	805	5	FSM	ENSMUSG00000020268.15	ENSMUST00000144164.9	3431	5	315	2311	-9	422	multi-exon	FALSE	canonical	3	120	junction_4	23.1557228347551	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAACGTTCCCCTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	54751423	54731495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_54732029_54739404_54739487_54741170_54741242_54744052_54744126_54751377
ENSMUSG00000020268.15_54731628_54751423_1	chr11	-	673	5	FSM	ENSMUSG00000020268.15	ENSMUST00000144164.9	3431	5	315	2443	-9	290	multi-exon	FALSE	canonical	3	120	junction_4	23.1557228347551	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAAGTTGGTAAAAAATT	NA	False	NA	NA	False	ATTAAA	-21	NA	54751423	54731627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_54732029_54739404_54739487_54741170_54741242_54744052_54744126_54751377
ENSMUSG00000020277.11_77823740_77826084_1	chr10	-	941	6	ISM	ENSMUSG00000020277.11	ENSMUST00000020522.9	3730	22	19557	959	1926	-959	3prime_fragment	FALSE	canonical	3	1163	junction_2	47.9933328703061	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGTCACTGGGACAACA	1010	False	NA	-30	True	AATAAA	-15	NA	77826084	77823739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975
ENSMUSG00000020277.11_77823740_77845580_1	chr10	-	2710	22	FSM	ENSMUSG00000020277.11	ENSMUST00000020522.9	3730	22	61	959	-10	-959	multi-exon	FALSE	canonical	3	1016	junction_15	83.2280695716646	840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGTCACTGGGACAACA	NA	False	NA	-30	True	AATAAA	-15	NA	77845580	77823739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
ENSMUSG00000020280.13_23598822_23615883_1	chr11	+	1727	4	NIC	ENSMUSG00000020280.13	novel	3177	18	NA	NA	-16852	-7398	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGGCTGGGTGAAGGAGCG	NA	False	NA	NA	False	NA	NA	NA	23598821	23615883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_23599591_23600929_23601056_23605435_23606131_23615746
ENSMUSG00000020280.13_23599456_23615883_1	chr11	+	1093	4	NIC	ENSMUSG00000020280.13	novel	3177	18	NA	NA	-16218	-7398	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGGCTGGGTGAAGGAGCG	NA	False	NA	NA	False	NA	NA	NA	23599455	23615883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_23599591_23600929_23601056_23605435_23606131_23615746
ENSMUSG00000020280.13_23616188_23682876_1	chr11	+	3378	18	FSM	ENSMUSG00000020280.13	ENSMUST00000058163.11	3559	18	181	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	15.9356404539699	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGCATTGTTTTTTTTT	NA	False	NA	10	True	ATTAAA	-17	NA	23616187	23682876	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_23616454_23617277_23617415_23622507_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678974_23679075_23681320
ENSMUSG00000020287.16_32176505_32182024_1	chr11	+	1046	4	NNC	ENSMUSG00000020287.16	novel	1737	4	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	161.765948895997	1898	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGTCTCAGCCAGAATT	NA	False	NA	27	True	AATAAA	-24	NA	32176504	32182024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_32176697_32177751_32177950_32179848_32180054_32181573
ENSMUSG00000020287.16_32176505_32182024_2	chr11	+	1067	4	FSM	ENSMUSG00000020287.16	ENSMUST00000020528.14	1737	4	-6	676	0	2	multi-exon	FALSE	canonical	3	333	junction_1	11.8977121983832	1965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGTCTCAGCCAGAATT	NA	False	NA	27	True	AATAAA	-24	NA	32176504	32182024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_32176718_32177751_32177950_32179848_32180054_32181573
ENSMUSG00000020287.16_32182669_32217635_1	chr11	+	2087	13	NIC	ENSMUSG00000020287.16	novel	1737	4	NA	NA	6130	34935	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCACCTCGGCCTCGGCGCT	NA	False	NA	NA	False	NA	NA	NA	32182668	32217635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_32183117_32183903_32184097_32184731_32184922_32186787_32186918_32187299_32187407_32189796_32189954_32191797_32191936_32198144_32198227_32200124_32200279_32203874_32203950_32205438_32205569_32213024_32213095_32217422
ENSMUSG00000020288.14_23439736_23447946_1	chr11	-	1750	9	FSM	ENSMUSG00000020288.14	ENSMUST00000020529.13	3023	9	84	1189	-16	-153	multi-exon	TRUE	canonical	3	225	junction_2	27.6394193137265	771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAAGTGTGCTTTATTTC	NA	False	NA	-4	True	AATAAA	-20	NA	23447946	23439735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_23440571_23440668_23440721_23441012_23441115_23441474_23441583_23442217_23442307_23443278_23443394_23444978_23445065_23446690_23446882_23447774
ENSMUSG00000020288.14_23440074_23447839_1	chr11	-	1305	9	FSM	ENSMUSG00000020288.14	ENSMUST00000020529.13	3023	9	191	1527	56	247	multi-exon	FALSE	canonical	3	225	junction_2	27.6394193137265	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTTATTCTAAGCCAGT	NA	False	NA	-17	True	AATAAA	-16	NA	23447839	23440073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_23440571_23440668_23440721_23441012_23441115_23441474_23441583_23442217_23442307_23443278_23443394_23444978_23445065_23446690_23446882_23447774
ENSMUSG00000020288.14_23440074_23447946_1	chr11	-	1407	9	FSM	ENSMUSG00000020288.14	ENSMUST00000109539.8	3583	9	-16	2192	-16	247	multi-exon	FALSE	canonical	3	33	junction_8	76.5816557669002	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTTATTCTAAGCCAGT	NA	False	NA	-17	True	AATAAA	-16	NA	23447946	23440073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_23440571_23440668_23440721_23441012_23441115_23441474_23441583_23442217_23442307_23443278_23443394_23444978_23445065_23446690_23446877_23447774
ENSMUSG00000020288.14_23440427_23447946_2	chr11	-	1059	9	FSM	ENSMUSG00000020288.14	ENSMUST00000020529.13	3023	9	84	1880	-16	0	multi-exon	FALSE	canonical	3	225	junction_2	27.6394193137265	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGAGCTTACCGCCCAG	NA	False	NA	-18	True	AATAAA	-6	NA	23447946	23440426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_23440571_23440668_23440721_23441012_23441115_23441474_23441583_23442217_23442307_23443278_23443394_23444978_23445065_23446690_23446882_23447774
ENSMUSG00000020289.16_32176505_32182024_1	chr11	-	1061	4	NNC	ENSMUSG00000020289.16	novel	3531	12	NA	NA	2377	-877	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1926	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAGAGGGCGGGGACTGG	NA	False	NA	NA	False	NA	NA	NA	32182024	32176504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_32176718_32177751_32177950_32179848_32180048_32181573
ENSMUSG00000020290.15_23206041_23246233_1	chr11	+	4025	25	FSM	ENSMUSG00000020290.15	ENSMUST00000102869.8	6004	25	-37	2016	0	0	multi-exon	FALSE	canonical	2	1142	junction_7	252.998761388053	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATGTGTTTTTTGTAT	NA	False	NA	12	True	ATTAAA	-21	NA	23206040	23246233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
ENSMUSG00000020299.7_31915592_31929089_1	chr11	+	1438	5	FSM	ENSMUSG00000020299.7	ENSMUST00000102829.4	2000	5	0	562	0	-562	multi-exon	FALSE	canonical	3	12	junction_4	0.707106781186548	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAATGTGAATTTCCTCCT	2284	False	NA	NA	False	AATATA	-23	NA	31915591	31929089	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_31915952_31923555_31923642_31925036_31925136_31926785_31926831_31928241
ENSMUSG00000020303.3_31309439_31320074_1	chr11	-	1808	4	FSM	ENSMUSG00000020303.3	ENSMUST00000020546.3	3940	4	0	2132	0	-1453	multi-exon	FALSE	canonical	3	131	junction_2	14.613540144522	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACTGGGTCACAAAAACCA	NA	False	NA	NA	False	AATAAA	-17	NA	31320074	31309438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_31310529_31315331_31315544_31317725_31317869_31319711
ENSMUSG00000020303.3_31309897_31320074_1	chr11	-	1350	4	FSM	ENSMUSG00000020303.3	ENSMUST00000020546.3	3940	4	0	2590	0	-1911	multi-exon	FALSE	canonical	3	131	junction_2	14.613540144522	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCGGTCTGTGGAGTTAG	NA	False	NA	NA	False	NA	NA	NA	31320074	31309896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_31310529_31315331_31315544_31317725_31317869_31319711
ENSMUSG00000020303.3_31310045_31319888_1	chr11	-	1016	4	FSM	ENSMUSG00000020303.3	ENSMUST00000020546.3	3940	4	186	2738	159	-2059	multi-exon	FALSE	canonical	3	131	junction_2	14.613540144522	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGTGTGCAAATTGTGG	NA	False	NA	-19	True	ATTAAA	-20	NA	31319888	31310044	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_31310529_31315331_31315544_31317725_31317869_31319711
ENSMUSG00000020303.3_31318003_31319888_1	chr11	-	502	2	ISM	ENSMUSG00000020303.3	ENSMUST00000152094.2	447	3	159	4	159	0	3prime_fragment	FALSE	canonical	3	18	junction_1	0	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGAAAATAATGACATTTT	NA	False	NA	NA	False	AATACA	-18	NA	31319888	31318002	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_31318328_31319711
ENSMUSG00000020303.3_31318003_31320074_1	chr11	-	688	2	ISM	ENSMUSG00000020303.3	ENSMUST00000152094.2	447	3	-27	4	0	0	intron_retention	FALSE	canonical	3	18	junction_1	0	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGAAAATAATGACATTTT	NA	False	NA	NA	False	AATACA	-18	NA	31320074	31318002	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_31318328_31319711
ENSMUSG00000020303.3_31318003_31320124_1	chr11	-	738	2	ISM	ENSMUSG00000020303.3	ENSMUST00000152094.2	447	3	-77	4	-50	0	intron_retention	FALSE	canonical	3	18	junction_1	0	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGAAAATAATGACATTTT	NA	False	NA	NA	False	AATACA	-18	NA	31320124	31318002	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_31318328_31319711
ENSMUSG00000020305.14_30904448_31051471_1	chr11	+	1942	10	FSM	ENSMUSG00000020305.14	ENSMUST00000020551.13	3228	10	53	1233	0	138	multi-exon	FALSE	canonical	3	71	junction_7	7.49979423586054	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTGCTGGATGTGACTT	NA	False	NA	13	True	AATAAA	-13	NA	30904447	31051471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_30904570_30948312_30948522_30978907_30979067_31005457_31005571_31006101_31006238_31008821_31009000_31011388_31011587_31031361_31031623_31035000_31035132_31051036
ENSMUSG00000020307.16_79518029_79524232_1	chr10	+	1099	6	NNC	ENSMUSG00000020307.16	novel	1266	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	763.990157004657	2986	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAGAGAATCACCTAGGA	NA	False	NA	21	True	AATAAA	-21	NA	79518028	79524232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79518060_79518226_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682
ENSMUSG00000020307.16_79518029_79524232_2	chr10	+	1100	6	NNC	ENSMUSG00000020307.16	novel	1266	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	763.990157004657	2821	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAGAGAATCACCTAGGA	NA	False	NA	21	True	AATAAA	-21	NA	79518028	79524232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79518083_79518248_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682
ENSMUSG00000020307.16_79518029_79524232_3	chr10	+	1127	6	NNC	ENSMUSG00000020307.16	novel	1266	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	763.990157004657	3046	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAGAGAATCACCTAGGA	NA	False	NA	21	True	AATAAA	-21	NA	79518028	79524232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79518097_79518235_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682
ENSMUSG00000020307.16_79518238_79523951_1	chr10	+	772	5	FSM	ENSMUSG00000020307.16	ENSMUST00000218964.2	979	5	-70	277	0	0	multi-exon	FALSE	canonical	3	168	junction_4	778.055749930556	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCGACAGACTACCTCACCG	NA	False	NA	49	True	AATAAA	-40	NA	79518237	79523951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523686
ENSMUSG00000020307.16_79520837_79524232_1	chr10	+	778	3	ISM	ENSMUSG00000020307.16	ENSMUST00000218938.2	422	5	616	-457	0	0	3prime_fragment	FALSE	canonical	3	123	junction_2	838.5	1590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAGAGAATCACCTAGGA	NA	False	NA	21	True	AATAAA	-21	NA	79520836	79524232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_79520937_79521066_79521202_79523689
ENSMUSG00000020307.16_79521064_79524232_1	chr10	+	688	2	ISM	ENSMUSG00000020307.16	ENSMUST00000166603.2	1078	6	2926	-4	227	0	3prime_fragment	FALSE	canonical	3	1645	junction_1	0	1912	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAGAGAATCACCTAGGA	NA	False	NA	21	True	AATAAA	-21	NA	79521063	79524232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_79521202_79523682
ENSMUSG00000020307.16_79521182_79523951_1	chr10	+	289	2	ISM	ENSMUSG00000020307.16	ENSMUST00000166603.2	1078	6	3044	277	345	0	3prime_fragment	FALSE	canonical	3	1645	junction_1	0	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCGACAGACTACCTCACCG	NA	False	NA	49	True	AATAAA	-40	NA	79521181	79523951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_79521202_79523682
ENSMUSG00000020307.16_79521182_79524232_1	chr10	+	570	2	ISM	ENSMUSG00000020307.16	ENSMUST00000166603.2	1078	6	3044	-4	345	0	3prime_fragment	FALSE	canonical	3	1645	junction_1	0	1836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAGAGAATCACCTAGGA	NA	False	NA	21	True	AATAAA	-21	NA	79521181	79524232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_79521202_79523682
ENSMUSG00000020308.8_79505717_79511961_1	chr10	+	843	2	NNC	ENSMUSG00000020308.8	novel	368	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_1	0	407	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTTGCTGGTCACCTG	8479	False	NA	11	True	AATAAA	-13	NA	79505716	79511961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79505832_79511233
ENSMUSG00000020308.8_79505717_79511961_2	chr10	+	987	2	FSM	ENSMUSG00000020308.8	ENSMUST00000220175.2	278	2	-30	-679	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTTGCTGGTCACCTG	8479	False	NA	11	True	AATAAA	-13	NA	79505716	79511961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_79505976_79511233
ENSMUSG00000020309.7_30926707_30936350_1	chr11	-	1279	2	FSM	ENSMUSG00000020309.7	ENSMUST00000020553.5	1018	2	-16	-245	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTAAGTGTCATTTCT	NA	False	NA	NA	False	AATAAA	-33	NA	30936350	30926706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_30927747_30936111
ENSMUSG00000020309.7_30926952_30936350_1	chr11	-	1070	3	FSM	ENSMUSG00000020309.7	ENSMUST00000101394.5	1315	3	0	245	0	0	multi-exon	FALSE	canonical	3	30	junction_1	6	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAATTGTACTTTTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	30936350	30926951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_30927747_30929564_30929601_30936111
ENSMUSG00000020321.17_21507242_21521815_1	chr11	-	1289	9	FSM	ENSMUSG00000020321.17	ENSMUST00000239073.2	1958	9	119	550	119	-455	multi-exon	FALSE	canonical	3	1237	junction_4	96.8522553944925	12770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTCAGACTCTGTTTCTA	NA	False	NA	-8	True	AATAAA	-19	NA	21521815	21507241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_21507569_21508461_21508552_21509191_21509306_21509698_21509876_21512864_21512988_21514040_21514217_21515823_21515921_21516619_21516719_21521729
ENSMUSG00000020321.17_21507242_21521815_2	chr11	-	1289	9	NNC	ENSMUSG00000020321.17	novel	1958	9	NA	NA	119	-455	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	459.37675169734	3135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTCAGACTCTGTTTCTA	NA	False	NA	-8	True	AATAAA	-19	NA	21521815	21507241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_21507569_21508461_21508546_21509185_21509306_21509698_21509876_21512864_21512988_21514040_21514217_21515823_21515921_21516619_21516719_21521729
ENSMUSG00000020321.17_21507242_21521934_1	chr11	-	1408	9	FSM	ENSMUSG00000020321.17	ENSMUST00000239073.2	1958	9	0	550	0	-455	multi-exon	FALSE	canonical	3	1237	junction_4	96.8522553944925	12883	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTCAGACTCTGTTTCTA	NA	False	NA	-8	True	AATAAA	-19	NA	21521934	21507241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_21507569_21508461_21508552_21509191_21509306_21509698_21509876_21512864_21512988_21514040_21514217_21515823_21515921_21516619_21516719_21521729
ENSMUSG00000020326.8_40641575_40645866_1	chr11	-	1044	6	FSM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	272	2196	272	-1658	multi-exon	FALSE	canonical	3	618	junction_3	51.9422756528822	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAGTGAATTGTTGACT	NA	False	NA	87	True	TATAAA	-23	NA	40645866	40641574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
ENSMUSG00000020326.8_40641575_40646138_1	chr11	-	1316	6	FSM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	0	2196	0	-1658	multi-exon	FALSE	canonical	3	618	junction_3	51.9422756528822	1361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAGTGAATTGTTGACT	NA	False	NA	87	True	TATAAA	-23	NA	40646138	40641574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
ENSMUSG00000020326.8_40641917_40646138_1	chr11	-	1175	5	ISM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	0	2538	0	-2000	5prime_fragment	FALSE	canonical	3	618	junction_2	50.9043220168975	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGGCTTTTTTTTTTAAT	NA	False	NA	NA	False	TATAAA	-5	NA	40646138	40641916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
ENSMUSG00000020328.11_40624494_40630873_1	chr11	+	1678	4	FSM	ENSMUSG00000020328.11	ENSMUST00000141839.2	577	4	-538	-563	0	0	multi-exon	FALSE	canonical	3	90	junction_1	492.487788906712	8146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTACTTTTTCTTTTCT	NA	False	NA	29	True	AATAAA	-21	NA	40624493	40630873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_40625083_40626844_40626894_40627319_40627472_40629985
ENSMUSG00000020328.11_40624494_40630873_2	chr11	+	1502	4	FSM	ENSMUSG00000020328.11	ENSMUST00000127382.2	727	4	-279	-496	0	0	multi-exon	FALSE	canonical	3	70	junction_2	523.696052644619	6847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTACTTTTTCTTTTCT	NA	False	NA	29	True	AATAAA	-21	NA	40624493	40630873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_40624982_40626844_40626894_40627394_40627472_40629985
ENSMUSG00000020328.11_40624773_40630436_1	chr11	+	861	4	FSM	ENSMUSG00000020328.11	ENSMUST00000020578.11	1577	4	279	437	0	59	multi-exon	FALSE	canonical	3	1122	junction_2	37.9326889224701	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGAGTAAGAGTTGTAT	NA	False	NA	7	True	AGTAAA	-1	NA	40624772	40630436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_40624982_40626844_40626894_40627319_40627472_40629985
ENSMUSG00000020328.11_40624773_40630873_1	chr11	+	1223	4	FSM	ENSMUSG00000020328.11	ENSMUST00000127382.2	727	4	0	-496	0	0	multi-exon	FALSE	canonical	3	70	junction_2	523.696052644619	2343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTACTTTTTCTTTTCT	NA	False	NA	29	True	AATAAA	-21	NA	40624772	40630873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_40624982_40626844_40626894_40627394_40627472_40629985
ENSMUSG00000020328.11_40625032_40630873_1	chr11	+	1140	4	FSM	ENSMUSG00000020328.11	ENSMUST00000141839.2	577	4	0	-563	0	0	multi-exon	FALSE	canonical	3	90	junction_1	492.487788906712	944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTACTTTTTCTTTTCT	NA	False	NA	29	True	AATAAA	-21	NA	40625031	40630873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_40625083_40626844_40626894_40627319_40627472_40629985
ENSMUSG00000020329.13_79571961_79574241_1	chr10	-	1012	10	ISM	ENSMUSG00000020329.13	ENSMUST00000020580.13	3755	21	8172	-3	224	0	3prime_fragment	TRUE	canonical	3	141	junction_6	13.7284061639532	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGACGCTGCGCTCGGCGC	NA	False	NA	-4	True	NA	NA	NA	79574241	79571960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_79572118_79572200_79572278_79572356_79572449_79572567_79572641_79573097_79573197_79573290_79573344_79573433_79573548_79573633_79573721_79573864_79574045_79574161
ENSMUSG00000020330.17_40605239_40624243_1	chr11	-	1406	10	ISM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	6	13017	0	6491	5prime_fragment	FALSE	canonical	3	534	junction_2	71.1602260942008	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCAGTGTGATGATTTTAC	NA	False	NA	NA	False	NA	NA	NA	40624243	40605238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
ENSMUSG00000020333.18_54194624_54252365_1	chr11	+	2587	21	FSM	ENSMUSG00000020333.18	ENSMUST00000093106.12	5804	21	0	3217	0	0	multi-exon	FALSE	canonical	3	16	junction_10	11.8346947573649	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTGTACTTAATTATTT	NA	False	NA	9	True	ATTAAA	-23	NA	54194623	54252365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_54194749_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227761_54227840_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
ENSMUSG00000020349.5_51989870_52013441_1	chr11	+	1576	7	FSM	ENSMUSG00000020349.5	ENSMUST00000020608.3	7102	7	362	5164	362	2922	multi-exon	TRUE	canonical	3	1809	junction_6	129.264586539908	1441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGGTTTGAATTGTATCA	NA	False	NA	27	True	AATAAA	-17	NA	51989869	52013441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_51989978_52003946_52004157_52008813_52008988_52009495_52009586_52009969_52010132_52011759_52011879_52012728
ENSMUSG00000020349.5_51989870_52013441_2	chr11	+	1569	7	NNC	ENSMUSG00000020349.5	novel	7102	7	NA	NA	362	2922	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	751.531639756807	361	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGGTTTGAATTGTATCA	NA	False	NA	27	True	AATAAA	-17	NA	51989869	52013441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_51989978_52003953_52004157_52008813_52008988_52009495_52009586_52009969_52010132_52011759_52011879_52012728
ENSMUSG00000020349.5_51989870_52013566_1	chr11	+	1694	7	NNC	ENSMUSG00000020349.5	novel	7102	7	NA	NA	362	3047	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	751.531639756807	1516	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCTGGCAACTCCTTGG	NA	False	NA	24	True	AATAAA	-20	NA	51989869	52013566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_51989978_52003953_52004157_52008813_52008988_52009495_52009586_52009969_52010132_52011759_52011879_52012728
ENSMUSG00000020349.5_51989870_52013566_2	chr11	+	1701	7	FSM	ENSMUSG00000020349.5	ENSMUST00000020608.3	7102	7	362	5039	362	3047	multi-exon	FALSE	canonical	3	1809	junction_6	129.264586539908	2579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCTGGCAACTCCTTGG	NA	False	NA	24	True	AATAAA	-20	NA	51989869	52013566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_51989978_52003946_52004157_52008813_52008988_52009495_52009586_52009969_52010132_52011759_52011879_52012728
ENSMUSG00000020349.5_51989870_52014219_1	chr11	+	2354	7	FSM	ENSMUSG00000020349.5	ENSMUST00000020608.3	7102	7	362	4386	362	3700	multi-exon	FALSE	canonical	3	1809	junction_6	129.264586539908	2807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGTTGAATTTGGAACCA	NA	False	NA	11	True	AATAAA	-18	NA	51989869	52014219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_51989978_52003946_52004157_52008813_52008988_52009495_52009586_52009969_52010132_52011759_52011879_52012728
ENSMUSG00000020359.14_51491696_51497198_1	chr11	+	1205	6	NIC	ENSMUSG00000020359.14	novel	829	2	NA	NA	1602	1882	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	27630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTCGCCCTCCGCGCCGT	NA	False	NA	NA	False	NA	NA	NA	51491695	51497198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_51492306_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166
ENSMUSG00000020359.14_51491696_51497198_2	chr11	+	1346	7	NIC	ENSMUSG00000020359.14	novel	829	2	NA	NA	1602	1882	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	29085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTCGCCCTCCGCGCCGT	NA	False	NA	NA	False	NA	NA	NA	51491695	51497198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_51492306_51492576_51492718_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166
ENSMUSG00000020359.14_51492001_51497198_1	chr11	+	900	6	NIC	ENSMUSG00000020359.14	novel	1609	13	NA	NA	1907	1882	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTCGCCCTCCGCGCCGT	NA	False	NA	NA	False	NA	NA	NA	51492000	51497198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_51492306_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166
ENSMUSG00000020359.14_51492001_51497198_2	chr11	+	1041	7	NIC	ENSMUSG00000020359.14	novel	1609	13	NA	NA	1907	1882	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTCGCCCTCCGCGCCGT	NA	False	NA	NA	False	NA	NA	NA	51492000	51497198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_51492306_51492576_51492718_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166
ENSMUSG00000020361.14_53152401_53160584_1	chr11	-	1071	8	NNC	ENSMUSG00000020361.14	novel	4618	19	NA	NA	-2516	1306	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	689.542261657866	1885	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTAAGTTGTCAACTTTG	NA	False	NA	-44	True	ATTAAA	-16	NA	53160584	53152400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_53152643_53153090_53153253_53153706_53153827_53155860_53155969_53156750_53156871_53157792_53157946_53159316_53159413_53160514
ENSMUSG00000020361.14_53152401_53160584_2	chr11	-	1077	8	ISM	ENSMUSG00000020361.14	ENSMUST00000020630.8	4618	19	30700	1760	-2516	1306	3prime_fragment	FALSE	canonical	3	1816	junction_4	182.057290825875	1919	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTAAGTTGTCAACTTTG	NA	False	NA	-44	True	ATTAAA	-16	NA	53160584	53152400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_53152643_53153090_53153253_53153706_53153827_53155860_53155969_53156750_53156877_53157792_53157946_53159316_53159413_53160514
ENSMUSG00000020363.7_49717690_49729440_1	chr11	+	1505	6	ISM	ENSMUSG00000020363.7	ENSMUST00000020629.5	2947	19	32676	0	32676	0	3prime_fragment	FALSE	canonical	3	375	junction_2	70.8971085447072	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCGACTTGTTTGAATT	4748	False	NA	27	True	AATAAA	-17	NA	49717689	49729440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_49717729_49717957_49718073_49720566_49720695_49723687_49723856_49726438_49726601_49728547
ENSMUSG00000020366.19_49737720_49774704_1	chr11	+	1991	12	FSM	ENSMUSG00000020366.19	ENSMUST00000020634.14	4675	12	140	2544	0	567	multi-exon	FALSE	canonical	3	274	junction_7	40.7615521322656	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGCTATTCTTAAATTTG	NA	False	NA	NA	False	AATAAA	-7	NA	49737719	49774704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49759998_49760138_49763560_49763727_49765090_49765163_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773973
ENSMUSG00000020368.16_50185780_50216500_1	chr11	-	3289	15	FSM	ENSMUSG00000020368.16	ENSMUST00000179865.8	4281	15	0	992	0	-486	multi-exon	FALSE	canonical	3	497	junction_14	977.081357713797	1493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTGTGGCTTGTA	8136	False	NA	-2	True	AATAAA	-23	NA	50216500	50185779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202608_50216319
ENSMUSG00000020368.16_50185780_50216500_2	chr11	-	3253	15	NNC	ENSMUSG00000020368.16	novel	4281	15	NA	NA	0	-486	at_least_one_novel_splicesite	FALSE	canonical	3	201	junction_14	1051.7507173416	1080	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTGTGGCTTGTA	8136	False	NA	-2	True	AATAAA	-23	NA	50216500	50185779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202608_50216355
ENSMUSG00000020368.16_50186607_50216500_1	chr11	-	2462	15	FSM	ENSMUSG00000020368.16	ENSMUST00000179865.8	4281	15	0	1819	0	419	multi-exon	FALSE	canonical	3	497	junction_14	977.081357713797	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAATCACGTTCAAGTGC	8136	False	NA	-6	True	ATTAAA	-24	NA	50216500	50186606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202608_50216319
ENSMUSG00000020372.16_48691187_48696920_1	chr11	+	1106	8	FSM	ENSMUSG00000020372.16	ENSMUST00000020640.8	1447	8	0	341	0	0	multi-exon	FALSE	canonical	1	1907	junction_2	1651.73542626153	63920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATATGTGAGTCCTGGA	NA	False	NA	28	True	AATAAA	-20	NA	48691186	48696920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_48691400_48692489_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
ENSMUSG00000020385.17_51154013_51163636_1	chr11	+	1314	4	NIC	ENSMUSG00000020385.17	novel	742	7	NA	NA	0	445	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	34.3737626039914	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACAATTGTGTTGTTTTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	51154012	51163636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626
ENSMUSG00000020385.17_51154013_51172591_1	chr11	+	1845	13	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	39.9666527661916	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51154012	51172591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUSG00000020385.17_51154013_51172591_2	chr11	+	1786	12	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_2	35.3321898042513	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51154012	51172591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_51154097_51157997_51158159_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUSG00000020386.6_51654521_51682582_1	chr11	+	1024	7	FSM	ENSMUSG00000020386.6	ENSMUST00000020653.6	1201	7	7	170	0	-170	multi-exon	FALSE	canonical	3	666	junction_5	46.9006041183551	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGTGAAACTTTTATGTA	3572	False	NA	6	True	TATAAA	-18	NA	51654520	51682582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_51654619_51668313_51668389_51670515_51670636_51673598_51673665_51678976_51679081_51680023_51680156_51682153
ENSMUSG00000020386.6_51654521_51682753_1	chr11	+	1189	7	NNC	ENSMUSG00000020386.6	novel	1201	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	284.278277201915	3171	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTTGGGCAGCTGTT	3572	False	NA	13	True	AATAAA	-19	NA	51654520	51682753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_51654619_51668313_51668389_51670515_51670636_51673604_51673665_51678976_51679081_51680023_51680156_51682153
ENSMUSG00000020386.6_51654521_51682753_2	chr11	+	1188	7	NNC	ENSMUSG00000020386.6	novel	1201	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	279.793773260871	3174	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTTGGGCAGCTGTT	3572	False	NA	13	True	AATAAA	-19	NA	51654520	51682753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_51654619_51668313_51668389_51670515_51670636_51673598_51673665_51678983_51679081_51680023_51680156_51682153
ENSMUSG00000020388.13_53945754_53946882_1	chr11	-	697	3	ISM	ENSMUSG00000020388.13	ENSMUST00000018755.10	1182	7	12958	0	8512	0	3prime_fragment	FALSE	canonical	3	220	junction_1	9	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTAGTGTCTGGCCTGA	NA	False	NA	-2	True	AATAAA	-22	NA	53946882	53945753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_53946066_53946182_53946301_53946615
ENSMUSG00000020388.13_53945754_53959840_1	chr11	-	1030	6	NIC	ENSMUSG00000020388.13	novel	1182	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	11	junction_5	88.019543284432	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTAGTGTCTGGCCTGA	NA	False	NA	-2	True	AATAAA	-22	NA	53959840	53945753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_53946066_53946182_53946301_53946615_53946780_53946968_53947151_53950763_53950843_53959665
ENSMUSG00000020390.13_51877085_51891188_1	chr11	-	908	6	FSM	ENSMUSG00000020390.13	ENSMUST00000020657.13	1792	6	123	761	118	409	multi-exon	FALSE	canonical	3	559	junction_4	76.342910607338	3803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTTTGTCACTTATTTC	NA	False	NA	-1	True	AATACA	-15	NA	51891188	51877084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119
ENSMUSG00000020390.13_51877085_51891190_1	chr11	-	940	6	NNC	ENSMUSG00000020390.13	novel	1792	6	NA	NA	116	409	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	274.754435814966	1275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTTTGTCACTTATTTC	NA	False	NA	-1	True	AATACA	-15	NA	51891190	51877084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888614_51888726_51891119
ENSMUSG00000020390.13_51877085_51891306_1	chr11	-	1030	5	NNC	ENSMUSG00000020390.13	novel	1792	6	NA	NA	0	409	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	308.507698445274	2567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTTTGTCACTTATTTC	NA	False	NA	-1	True	AATACA	-15	NA	51891306	51877084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_51877638_51879438_51879528_51882220_51882311_51888614_51888726_51891119
ENSMUSG00000020390.13_51877085_51891590_1	chr11	-	995	7	FSM	ENSMUSG00000020390.13	ENSMUST00000109086.8	585	7	-1	-409	-1	409	multi-exon	FALSE	canonical	3	81	junction_6	225.904662782039	3913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTTTGTCACTTATTTC	NA	False	NA	-1	True	AATACA	-15	NA	51891590	51877084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119_51891189_51891503
ENSMUSG00000020390.13_51877211_51891190_1	chr11	-	788	5	NNC	ENSMUSG00000020390.13	novel	1792	6	NA	NA	116	283	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	308.507698445274	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTTCAAATATTGAATG	NA	False	NA	-30	True	AATATA	-20	NA	51891190	51877210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_51877638_51879438_51879528_51882220_51882311_51888614_51888726_51891119
ENSMUSG00000020390.13_51877211_51891306_1	chr11	-	900	6	FSM	ENSMUSG00000020390.13	ENSMUST00000020657.13	1792	6	5	887	0	283	multi-exon	FALSE	canonical	3	559	junction_4	76.342910607338	2263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTTCAAATATTGAATG	NA	False	NA	-30	True	AATATA	-20	NA	51891306	51877210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119
ENSMUSG00000020392.9_51858488_51867101_1	chr11	+	772	3	FSM	ENSMUSG00000020392.9	ENSMUST00000102763.5	1832	3	0	1060	0	30	multi-exon	FALSE	canonical	3	1066	junction_1	20	2438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGTTTGTCCTGAGCCA	NA	False	NA	46	True	AATACA	-23	NA	51858487	51867101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_51858785_51860970_51861071_51866726
ENSMUSG00000020397.16_46327788_46332356_1	chr11	+	1368	3	FSM	ENSMUSG00000020397.16	ENSMUST00000109232.4	2547	3	-13	1192	0	2	multi-exon	FALSE	canonical	3	262	junction_1	137	1864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATTGTCATTCTTGGAAA	NA	False	NA	14	True	AATAAA	-16	NA	46327787	46332356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_46328019_46330632_46330803_46331389
ENSMUSG00000020397.16_46327788_46332356_2	chr11	+	1016	2	FSM	ENSMUSG00000020397.16	ENSMUST00000152119.2	381	2	36	-671	0	2	multi-exon	FALSE	canonical	3	22	junction_1	0	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATTGTCATTCTTGGAAA	NA	False	NA	14	True	AATAAA	-16	NA	46327787	46332356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_46327837_46331389
ENSMUSG00000020397.16_46327788_46332356_3	chr11	+	1114	3	NNC	ENSMUSG00000020397.16	novel	1193	3	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	268	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATTGTCATTCTTGGAAA	NA	False	NA	14	True	AATAAA	-16	NA	46327787	46332356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_46327837_46330704_46330803_46331389
ENSMUSG00000020397.16_46327788_46332435_1	chr11	+	1375	3	NNC	ENSMUSG00000020397.16	novel	2547	3	NA	NA	0	81	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	268	1048	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTAGATTTATTCCAAAA	NA	False	NA	19	True	AATAAA	-32	NA	46327787	46332435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_46328019_46330704_46330803_46331389
ENSMUSG00000020397.16_46327832_46332356_1	chr11	+	1252	3	NNC	ENSMUSG00000020397.16	novel	2547	3	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	268	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATTGTCATTCTTGGAAA	NA	False	NA	14	True	AATAAA	-16	NA	46327831	46332356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_46328019_46330704_46330803_46331389
ENSMUSG00000020397.16_46327832_46332435_1	chr11	+	1403	3	FSM	ENSMUSG00000020397.16	ENSMUST00000109232.4	2547	3	31	1113	0	81	multi-exon	FALSE	canonical	3	262	junction_1	137	1998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTAGATTTATTCCAAAA	NA	False	NA	19	True	AATAAA	-32	NA	46327831	46332435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_46328019_46330632_46330803_46331389
ENSMUSG00000020397.16_46327832_46332435_2	chr11	+	1051	2	FSM	ENSMUSG00000020397.16	ENSMUST00000152119.2	381	2	80	-750	0	81	multi-exon	FALSE	canonical	3	22	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTAGATTTATTCCAAAA	NA	False	NA	19	True	AATAAA	-32	NA	46327831	46332435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_46327837_46331389
ENSMUSG00000020400.18_54801613_54811628_1	chr11	-	1434	7	ISM	ENSMUSG00000020400.18	ENSMUST00000108889.10	2834	18	35320	2	273	0	3prime_fragment	FALSE	canonical	3	102	junction_1	67.8126504094594	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	NA	False	NA	-5	True	CATAAA	-18	NA	54811628	54801612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586
ENSMUSG00000020400.18_54801613_54846883_1	chr11	-	2521	17	NIC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_16	54.30350903717	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3647	False	NA	-5	True	CATAAA	-18	NA	54846883	54801612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846846
ENSMUSG00000020400.18_54801613_54846883_2	chr11	-	2693	18	NIC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	179	junction_17	40.9030417393305	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3647	False	NA	-5	True	CATAAA	-18	NA	54846883	54801612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
ENSMUSG00000020402.12_52251962_52280224_1	chr11	+	1747	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	275	0	0	0	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	9003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5406	False	NA	30	True	AATAAA	-26	NA	52251961	52280224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
ENSMUSG00000020407.14_9068103_9086168_1	chr11	+	1159	9	FSM	ENSMUSG00000020407.14	ENSMUST00000101525.9	1157	9	-4	2	0	1	multi-exon	FALSE	canonical	3	102	junction_1	904.856126339983	10639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTGACTCTGCGGTA	NA	False	NA	24	True	AATAAA	-18	NA	9068102	9086168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_9068163_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ENSMUSG00000020407.14_9068548_9086168_1	chr11	+	1206	9	NNC	ENSMUSG00000020407.14	novel	1252	9	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	934.618697317254	15665	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTGACTCTGCGGTA	NA	False	NA	24	True	AATAAA	-18	NA	9068547	9086168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079600_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ENSMUSG00000020407.14_9068787_9086168_1	chr11	+	1180	9	NIC	ENSMUSG00000020407.14	novel	518	6	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	101	junction_1	905.183821110386	7405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTGACTCTGCGGTA	NA	False	NA	24	True	AATAAA	-18	NA	9068786	9086168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_9068868_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ENSMUSG00000020409.11_43324586_43337138_1	chr11	+	1955	16	FSM	ENSMUSG00000020409.11	ENSMUST00000020681.10	3625	16	0	1670	0	926	multi-exon	FALSE	canonical	3	184	junction_1	28.1705914425349	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTCTCAACAGTCAAGAA	NA	False	NA	14	True	AATAAA	-19	NA	43324585	43337138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_43324647_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
ENSMUSG00000020409.11_43324586_43337862_1	chr11	+	2679	16	FSM	ENSMUSG00000020409.11	ENSMUST00000020681.10	3625	16	0	946	0	-946	multi-exon	FALSE	canonical	3	184	junction_1	28.1705914425349	976	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGGATTTTCGTACACTT	NA	False	NA	14	True	AATAAA	-25	NA	43324585	43337862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_43324647_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
ENSMUSG00000020412.17_4587747_4601423_1	chr11	+	651	5	NNC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	0	-31962	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	143.630385016542	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGTAGATATTTATGAATT	NA	False	NA	NA	False	AATAAA	-27	NA	4587746	4601423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_4587823_4596561_4596721_4597062_4597234_4599739_4599870_4601308
ENSMUSG00000020412.17_4587747_4601423_2	chr11	+	749	6	NNC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	0	-31962	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_5	127.679912280672	310	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGTAGATATTTATGAATT	NA	False	NA	NA	False	AATAAA	-27	NA	4587746	4601423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4601308
ENSMUSG00000020412.17_4587747_4607765_1	chr11	+	957	7	NNC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	0	-25620	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_6	120.00370364655	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAGCCTAATCAGTCAAAT	NA	False	NA	NA	False	NA	NA	NA	4587746	4607765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4606268_4606337_4607510
ENSMUSG00000020412.17_4629333_4633385_1	chr11	+	794	5	ISM	ENSMUSG00000020412.17	ENSMUST00000070257.14	2650	20	41586	0	41586	0	3prime_fragment	FALSE	canonical	3	214	junction_1	23.032585612562	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTGTGACATGCTCCAG	NA	False	NA	8	True	AATAAA	-20	NA	4629332	4633385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_4629346_4629430_4629553_4630082_4630183_4631438_4631519_4632906
ENSMUSG00000020413.12_8946609_8961128_1	chr11	-	1105	8	FSM	ENSMUSG00000020413.12	ENSMUST00000020683.10	4640	8	63	3472	0	731	multi-exon	FALSE	canonical	3	104	junction_5	37.6557988054094	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTTGTTTTGTTTTC	NA	False	NA	NA	False	AAGAAA	-20	NA	8961128	8946608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496_8960625_8961058
ENSMUSG00000020419.12_4295814_4391090_1	chr11	-	1920	11	FSM	ENSMUSG00000020419.12	ENSMUST00000109949.8	1343	11	-8	-569	-8	0	multi-exon	FALSE	canonical	3	44	junction_4	69.004347689113	822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTTTGATAATTTATGT	NA	False	NA	-20	True	AATAAA	-11	NA	4391090	4295813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_4296667_4358589_4358844_4359006_4359159_4362212_4362281_4370703_4370731_4371588_4371610_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
ENSMUSG00000020419.12_4374248_4391163_1	chr11	-	501	6	NNC	ENSMUSG00000020419.12	novel	583	5	NA	NA	-58	0	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_5	60.0066662963374	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAATTAAAGACTCATCT	NA	False	NA	NA	False	NA	NA	NA	4391163	4374247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876_4390941_4391080
ENSMUSG00000020420.9_27560010_27577286_1	chr7	+	547	5	FSM	ENSMUSG00000020420.9	ENSMUST00000205534.2	3511	5	0	2964	0	-1706	multi-exon	FALSE	canonical	3	36	junction_1	11.4127122105133	749	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTGATCTCAAGATTTGC	3327	False	NA	6	True	AATAAA	-15	NA	27560009	27577286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27560182_27561961_27562015_27562813_27562941_27564994_27565094_27577190
ENSMUSG00000020427.12_7156086_7163545_1	chr11	-	2069	5	FSM	ENSMUSG00000020427.12	ENSMUST00000020702.11	2421	5	352	0	352	0	multi-exon	FALSE	canonical	3	177	junction_4	11.7340317027013	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTTTGTCTGTTTCTGG	NA	False	NA	NA	False	AATAAA	-23	NA	7163545	7156085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_7157507_7158368_7158509_7159458_7159579_7160018_7160246_7163384
ENSMUSG00000020430.13_3914009_3929221_1	chr11	+	927	6	NNC	ENSMUSG00000020430.13	novel	2923	15	NA	NA	0	-783	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	450.580070575697	1071	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTCTGTGTTCAGAAG	NA	False	NA	25	True	NA	NA	NA	3914008	3929221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_3914061_3918262_3918323_3927100_3927201_3927625_3927784_3927870_3928033_3928826
ENSMUSG00000020430.13_3914009_3929221_2	chr11	+	2087	15	NNC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	0	-783	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	301.370610541173	3325	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTCTGTGTTCAGAAG	NA	False	NA	25	True	NA	NA	NA	3914008	3929221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925746_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
ENSMUSG00000020430.13_3914009_3929221_3	chr11	+	2085	15	NNC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	0	-783	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	301.394717123914	2069	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTCTGTGTTCAGAAG	NA	False	NA	25	True	NA	NA	NA	3914008	3929221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927879_3928033_3928826
ENSMUSG00000020430.13_3914009_3929221_4	chr11	+	2084	15	NNC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	0	-783	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	294.498995182098	2473	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTCTGTGTTCAGAAG	NA	False	NA	25	True	NA	NA	NA	3914008	3929221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_3914061_3918272_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
ENSMUSG00000020441.7_59099147_59100831_1	chr11	+	857	4	NIC	ENSMUSG00000020441.7	novel	1285	7	NA	NA	0	-733	intron_retention	FALSE	canonical	3	140	junction_3	16.4181471413663	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGAAAAAGAAGAAGAAAC	NA	False	NA	NA	False	AAGAAA	-15	NA	59099146	59100831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_59099500_59099645_59099692_59099794_59100220_59100798
ENSMUSG00000020441.7_59099147_59101565_1	chr11	+	1280	7	NNC	ENSMUSG00000020441.7	novel	1285	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	60.7444556226236	633	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTATATTATCTCGCTG	NA	False	NA	8	True	AGTAAA	-16	NA	59099146	59101565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_59099500_59099645_59099692_59099794_59099878_59099953_59100027_59100133_59100220_59100798_59100931_59101058
ENSMUSG00000020444.20_59074701_59082638_1	chr11	-	938	8	FSM	ENSMUSG00000020444.20	ENSMUST00000170202.9	1078	8	140	0	0	0	multi-exon	FALSE	canonical	3	619	junction_7	90.3745042609262	4237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGTGTCACAGCCCTCC	1610	False	NA	-20	True	AATAAA	-13	NA	59082638	59074700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_59075014_59075261_59075348_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082576
ENSMUSG00000020444.20_59074701_59082638_2	chr11	-	933	8	NNC	ENSMUSG00000020444.20	novel	1078	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	292.487222815295	3688	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGTGTCACAGCCCTCC	1610	False	NA	-20	True	AATAAA	-13	NA	59082638	59074700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_59075014_59075261_59075348_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077604_59077714_59082576
ENSMUSG00000020444.20_59074701_59082638_3	chr11	-	929	8	NNC	ENSMUSG00000020444.20	novel	1078	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	285.042710727315	1205	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGTGTCACAGCCCTCC	1610	False	NA	-20	True	AATAAA	-13	NA	59082638	59074700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_59075005_59075261_59075348_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082576
ENSMUSG00000020444.20_59074701_59082638_4	chr11	-	933	8	NNC	ENSMUSG00000020444.20	novel	1078	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	289.016982764907	2936	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGTGTCACAGCCCTCC	1610	False	NA	-20	True	AATAAA	-13	NA	59082638	59074700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_59075014_59075261_59075343_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082576
ENSMUSG00000020444.20_59074701_59082778_1	chr11	-	901	8	NNC	ENSMUSG00000020444.20	novel	1078	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	290.128261572818	639	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGTGTCACAGCCCTCC	1470	False	NA	-20	True	AATAAA	-13	NA	59082778	59074700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_59075014_59075261_59075348_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082753
ENSMUSG00000020444.20_59074701_59082882_1	chr11	-	962	8	NNC	ENSMUSG00000020444.20	novel	1078	8	NA	NA	-104	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	289.785635057562	625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGTGTCACAGCCCTCC	1366	False	NA	-20	True	AATAAA	-13	NA	59082882	59074700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_59075014_59075261_59075348_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082796
ENSMUSG00000020448.17_3365982_3402336_1	chr11	-	2745	6	NNC	ENSMUSG00000020448.17	novel	2787	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	62.7279841856886	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGAGTGTGGAGCTTGTG	6842	False	NA	-5	True	ATTAAA	-14	NA	3402336	3365981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3382395_3382621_3402208
ENSMUSG00000020448.17_3367651_3402336_2	chr11	-	1091	7	FSM	ENSMUSG00000020448.17	ENSMUST00000077078.12	2787	7	27	1669	-2	225	multi-exon	FALSE	canonical	3	133	junction_2	17.6391294821737	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTATTTACAGAAACTTAC	6842	False	NA	NA	False	AATGAA	-14	NA	3402336	3367650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3382399_3382621_3402208
ENSMUSG00000020451.18_3295477_3298691_1	chr11	-	895	5	ISM	ENSMUSG00000020451.18	ENSMUST00000110029.9	2939	12	7450	1221	4126	-1221	3prime_fragment	FALSE	canonical	3	202	junction_1	18.3354165483089	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAAGAGTCTGTTACTCG	NA	False	NA	-22	True	GATAAA	-16	NA	3298691	3295476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593
ENSMUSG00000020451.18_3295477_3300578_1	chr11	-	1050	6	ISM	ENSMUSG00000020451.18	ENSMUST00000110029.9	2939	12	5563	1221	2239	-1221	3prime_fragment	FALSE	canonical	3	202	junction_1	16.9044372872923	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAAGAGTCTGTTACTCG	NA	False	NA	-22	True	GATAAA	-16	NA	3300578	3295476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391
ENSMUSG00000020451.18_3295477_3321343_1	chr11	-	2439	15	FSM	ENSMUSG00000020451.18	ENSMUST00000101642.10	3693	15	33	1221	-8	-1221	multi-exon	FALSE	canonical	3	120	junction_14	38.572023804931	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAAGAGTCTGTTACTCG	9847	False	NA	-22	True	GATAAA	-16	NA	3321343	3295476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3320968
ENSMUSG00000020453.18_3243193_3245429_1	chr11	+	1125	2	ISM	ENSMUSG00000020453.18	ENSMUST00000136285.2	652	3	325	-534	325	0	3prime_fragment	FALSE	canonical	3	69	junction_1	0	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGGCTTTGTGTGTTTT	9206	False	NA	NA	False	GATAAA	-17	NA	3243192	3245429	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_3243344_3244455
ENSMUSG00000020457.14_3200097_3216392_1	chr11	-	1355	9	FSM	ENSMUSG00000020457.14	ENSMUST00000020741.12	1546	9	1	190	0	0	multi-exon	FALSE	canonical	3	1733	junction_5	106.427719016241	1601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCAGGCTGGCTTTGAAC	NA	False	NA	NA	False	NA	NA	NA	3216392	3200096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_3200366_3202159_3202283_3202643_3202812_3204511_3204643_3206542_3206713_3209305_3209376_3212488_3212665_3214766_3214891_3216268
ENSMUSG00000020458.17_29668713_29692285_1	chr11	+	992	7	FSM	ENSMUSG00000020458.17	ENSMUST00000060992.6	1773	7	150	631	150	0	multi-exon	FALSE	canonical	3	50	junction_1	322.410409605866	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTATATTCTGTTG	NA	False	NA	7	True	AATAAA	-15	NA	29668712	29692285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_29668883_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
ENSMUSG00000020458.17_29668713_29692916_1	chr11	+	1623	7	FSM	ENSMUSG00000020458.17	ENSMUST00000060992.6	1773	7	150	0	150	0	multi-exon	FALSE	canonical	3	50	junction_1	322.410409605866	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29668712	29692916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_29668883_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
ENSMUSG00000020459.15_29476447_29495452_1	chr11	+	2955	14	FSM	ENSMUSG00000020459.15	ENSMUST00000093239.11	2741	14	-10	-204	0	173	multi-exon	FALSE	canonical	3	166	junction_5	30.3862706462472	598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAAATATTTTCCCTTCA	NA	False	NA	6	True	NA	NA	NA	29476446	29495452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
ENSMUSG00000020460.16_29495846_29497896_1	chr11	-	633	6	NNC	ENSMUSG00000020460.16	novel	791	6	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6097.42649320187	472654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	-31	True	AATAAA	-16	NA	29497896	29495845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_29496030_29496290_29496478_29496702_29496789_29497205_29497261_29497680_29497746_29497840
ENSMUSG00000020461.11_29495846_29498109_4	chr11	+	789	6	NNC	ENSMUSG00000020461.11	novel	2200	12	NA	NA	-2104	-30095	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	486397	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGGGGGCTTGTGAAAC	NA	False	NA	NA	False	NA	NA	NA	29495845	29498109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680_29497740_29497836
ENSMUSG00000020464.16_29105756_29111680_1	chr11	+	686	6	ISM	ENSMUSG00000020464.16	ENSMUST00000154924.8	3368	27	25012	0	17569	0	3prime_fragment	FALSE	canonical	3	581	junction_3	21.8229237271269	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATTTTTATATCTTAGGA	NA	False	NA	8	True	AATAAA	-20	NA	29105755	29111680	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
ENSMUSG00000020469.9_5846637_5848027_1	chr11	-	469	4	ISM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	755	0	755	0	3prime_fragment	FALSE	canonical	3	77	junction_3	8.80656320908194	664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTGTTGGCTTGACTG	NA	False	NA	2	True	AATAAA	-20	NA	5848027	5846636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831
ENSMUSG00000020469.9_5846637_5848782_1	chr11	-	811	6	ISM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	0	0	0	0	intron_retention	FALSE	canonical	3	38	junction_4	23.9115035077261	748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTGTTGGCTTGACTG	NA	False	NA	2	True	AATAAA	-20	NA	5848782	5846636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831_5847937_5848159_5848236_5848425
ENSMUSG00000020471.12_5822188_5828219_1	chr11	-	1571	11	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	786.821860397892	4096	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGAACCTTGTTCACTT	9578	False	NA	-6	True	AATAAA	-17	NA	5828219	5822187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828185
ENSMUSG00000020476.15_5738522_5750458_1	chr11	+	1796	13	FSM	ENSMUSG00000020476.15	ENSMUST00000109845.8	2001	13	34	171	0	170	multi-exon	FALSE	canonical	3	305	junction_7	40.5239126936183	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGACTAGCCCGTGAGTT	NA	False	NA	29	True	NA	NA	NA	5738521	5750458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747286_5747336_5747626_5747721_5748015_5748112_5748215_5748326_5749233_5749340_5749859
ENSMUSG00000020477.11_5654171_5657687_1	chr11	-	807	4	FSM	ENSMUSG00000020477.11	ENSMUST00000154330.2	995	4	0	188	0	155	multi-exon	FALSE	canonical	3	1753	junction_3	448.803099612984	3239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGCCTCTCTTGGTCTC	NA	False	NA	0	True	NA	NA	NA	5657687	5654170	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_5654733_5657297_5657410_5657486_5657556_5657623
ENSMUSG00000020477.11_5654171_5657687_2	chr11	-	786	4	NNC	ENSMUSG00000020477.11	novel	995	4	NA	NA	0	155	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_3	1216.61890317205	1894	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGCCTCTCTTGGTCTC	NA	False	NA	0	True	NA	NA	NA	5657687	5654170	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_5654733_5657297_5657410_5657486_5657556_5657644
ENSMUSG00000020477.11_5654326_5657687_1	chr11	-	652	4	FSM	ENSMUSG00000020477.11	ENSMUST00000154330.2	995	4	0	343	0	0	multi-exon	FALSE	canonical	3	1753	junction_3	448.803099612984	2945	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCTGGGTCTCTCTCTC	NA	False	NA	-25	True	AATAAA	-18	NA	5657687	5654325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_5654733_5657297_5657410_5657486_5657556_5657623
ENSMUSG00000020477.11_5654326_5657687_2	chr11	-	631	4	NNC	ENSMUSG00000020477.11	novel	995	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_3	1216.61890317205	1387	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCTGGGTCTCTCTCTC	NA	False	NA	-25	True	AATAAA	-18	NA	5657687	5654325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_5654733_5657297_5657410_5657486_5657556_5657644
ENSMUSG00000020483.15_87872089_87878359_1	chr11	-	738	3	FSM	ENSMUSG00000020483.15	ENSMUST00000020775.9	2476	3	0	1738	0	-1108	multi-exon	FALSE	canonical	3	615	junction_2	8	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTTTAGTTGCCTGGG	NA	False	NA	-24	True	AGTAAA	-16	NA	87878359	87872088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_87872397_87874697_87874837_87878068
ENSMUSG00000020483.15_87872089_87922644_1	chr11	-	691	3	NNC	ENSMUSG00000020483.15	novel	2443	3	NA	NA	-44285	-1108	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_2	289.5	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTTTAGTTGCCTGGG	NA	False	NA	-24	True	AGTAAA	-16	NA	87922644	87872088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_87872397_87874697_87874837_87922400
ENSMUSG00000020484.20_5470995_5474637_1	chr11	+	837	4	ISM	ENSMUSG00000020484.20	ENSMUST00000239150.2	1116	6	0	605	0	-306	intron_retention	FALSE	canonical	3	908	junction_2	26.2339898266013	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACATTCATTCTAATAGTG	NA	False	NA	NA	False	ACTAAA	-19	NA	5470994	5474637	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_5471201_5471922_5472020_5473332_5473468_5474238
ENSMUSG00000020484.20_5470995_5475893_1	chr11	+	1793	5	FSM	ENSMUSG00000020484.20	ENSMUST00000063084.16	2129	5	336	0	0	0	multi-exon	FALSE	canonical	3	876	junction_4	35.2801289680182	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGTTCTGTGATTTCTA	NA	False	NA	34	True	ATTAAA	-17	NA	5470994	5475893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_5471201_5471922_5472020_5473332_5473468_5474238_5474385_5474684
ENSMUSG00000020484.20_5470995_5475893_2	chr11	+	1788	5	NNC	ENSMUSG00000020484.20	novel	2129	5	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_3	399.293125410393	608	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGTTCTGTGATTTCTA	NA	False	NA	34	True	ATTAAA	-17	NA	5470994	5475893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_5471201_5471922_5472020_5473332_5473468_5474243_5474385_5474684
ENSMUSG00000020485.15_87628378_87634443_1	chr11	+	712	5	NNC	ENSMUSG00000020485.15	novel	706	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	239.946348169752	5579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAGGGTACTGAGGCCT	NA	False	NA	2	True	AATAAA	-19	NA	87628377	87634443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_87628495_87628992_87629100_87633621_87633678_87633883_87633944_87634071
ENSMUSG00000020485.15_87628378_87634443_2	chr11	+	696	5	NNC	ENSMUSG00000020485.15	novel	706	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	232.502688156503	4918	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAGGGTACTGAGGCCT	NA	False	NA	2	True	AATAAA	-19	NA	87628377	87634443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_87628485_87628992_87629100_87633621_87633678_87633883_87633938_87634071
ENSMUSG00000020485.15_87628378_87634443_3	chr11	+	840	6	NNC	ENSMUSG00000020485.15	novel	706	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	263.120960776598	171	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAGGGTACTGAGGCCT	NA	False	NA	2	True	AATAAA	-19	NA	87628377	87634443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_87628495_87628726_87628861_87628992_87629100_87633621_87633678_87633883_87633938_87634071
ENSMUSG00000020485.15_87628378_87634443_4	chr11	+	810	6	NNC	ENSMUSG00000020485.15	novel	706	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	262.630082054589	287	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAGGGTACTGAGGCCT	NA	False	NA	2	True	AATAAA	-19	NA	87628377	87634443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_87628495_87628726_87628831_87628992_87629100_87633621_87633678_87633883_87633938_87634071
ENSMUSG00000020485.15_87628378_87634443_5	chr11	+	699	5	NNC	ENSMUSG00000020485.15	novel	706	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	233.79625210854	5140	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAGGGTACTGAGGCCT	NA	False	NA	2	True	AATAAA	-19	NA	87628377	87634443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_87628495_87628999_87629100_87633621_87633678_87633883_87633938_87634071
ENSMUSG00000020485.15_87628378_87634443_7	chr11	+	652	5	NNC	ENSMUSG00000020485.15	novel	706	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	233.79625210854	211	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAGGGTACTGAGGCCT	NA	False	NA	2	True	AATAAA	-19	NA	87628377	87634443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_87628441_87628992_87629100_87633621_87633678_87633883_87633938_87634071
ENSMUSG00000020485.15_87628378_87634443_8	chr11	+	631	5	NNC	ENSMUSG00000020485.15	novel	706	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	229.915745437323	180	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAGGGTACTGAGGCCT	NA	False	NA	2	True	AATAAA	-19	NA	87628377	87634443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_87628420_87628992_87629100_87633621_87633678_87633883_87633938_87634071
ENSMUSG00000020492.12_87000077_87013036_1	chr11	+	595	4	FSM	ENSMUSG00000020492.12	ENSMUST00000020794.6	3037	4	17	2425	0	103	multi-exon	FALSE	canonical	3	189	junction_1	6.12825877028341	1194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCAGCATTCATTTTAGG	NA	False	NA	5	True	AATAAA	-17	NA	87000076	87013036	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_87000131_87006929_87007017_87008493_87008671_87012759
ENSMUSG00000020492.12_87000077_87013206_1	chr11	+	765	4	FSM	ENSMUSG00000020492.12	ENSMUST00000020794.6	3037	4	17	2255	0	273	multi-exon	FALSE	canonical	3	189	junction_1	6.12825877028341	1303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGTGTTGTTTGCTCTT	NA	False	NA	NA	False	TATAAA	-3	NA	87000076	87013206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_87000131_87006929_87007017_87008493_87008671_87012759
ENSMUSG00000020492.12_87000077_87013690_1	chr11	+	1249	4	FSM	ENSMUSG00000020492.12	ENSMUST00000020794.6	3037	4	17	1771	0	757	multi-exon	FALSE	canonical	3	189	junction_1	6.12825877028341	1603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTTTAGACTTTCTAT	NA	False	NA	5	True	AATAAA	-23	NA	87000076	87013690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_87000131_87006929_87007017_87008493_87008671_87012759
ENSMUSG00000020492.12_87000077_87015461_1	chr11	+	903	5	NIC	ENSMUSG00000020492.12	novel	861	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	84.7481563221289	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGCCTCCATGTTATATT	NA	False	NA	13	True	AATAAA	-21	NA	87000076	87015461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_87000131_87006929_87007017_87008493_87008671_87012759_87012966_87015082
ENSMUSG00000020493.9_86992281_86999594_1	chr11	-	726	5	ISM	ENSMUSG00000020493.9	ENSMUST00000051395.9	3824	10	-60	12302	-60	-12302	5prime_fragment	FALSE	canonical	3	68	junction_1	3.67423461417477	124	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTCCCTCCACCTCCAC	NA	False	NA	NA	False	NA	NA	NA	86999594	86992280	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_86992472_86994012_86994136_86994365_86994517_86996834_86996968_86999466
ENSMUSG00000020493.9_86994096_86999603_1	chr11	-	461	4	ISM	ENSMUSG00000020493.9	ENSMUST00000051395.9	3824	10	-69	14117	-69	-14117	5prime_fragment	FALSE	canonical	3	68	junction_2	3.74165738677394	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTACCACAGAGAACTTCAC	NA	False	NA	NA	False	NA	NA	NA	86999603	86994095	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_86994136_86994365_86994517_86996834_86996968_86999466
ENSMUSG00000020496.11_58823114_58828037_1	chr11	-	1406	3	ISM	ENSMUSG00000020496.11	ENSMUST00000094151.6	1949	4	1705	0	1705	0	3prime_fragment	TRUE	canonical	3	1063	junction_2	88.5	493	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTTTCCATACCTCCT	NA	False	NA	-16	True	AATAAA	-17	NA	58828037	58823113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_58824223_58824832_58825058_58827965
ENSMUSG00000020513.16_86436007_86458186_1	chr11	+	1681	9	FSM	ENSMUSG00000020513.16	ENSMUST00000069503.13	1871	9	190	0	190	0	multi-exon	FALSE	canonical	3	29	junction_1	8.83087623059003	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTCAGTCTGTTAAGTAAT	NA	False	NA	NA	False	AATAAA	-19	NA	86436006	86458186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_86436057_86439608_86439829_86440149_86440298_86443613_86443831_86445898_86446131_86448550_86448716_86452061_86452203_86456510_86456695_86457862
ENSMUSG00000020514.9_58062487_58070392_1	chr11	+	718	7	NNC	ENSMUSG00000020514.9	novel	722	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	492.788578736697	11091	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTTCATTGAATTATTG	1481	False	NA	13	True	AGTAAA	-16	NA	58062486	58070392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_58062540_58062619_58062669_58063858_58063977_58066102_58066169_58066957_58067036_58068042_58068113_58070108
ENSMUSG00000020514.9_58062487_58070392_2	chr11	+	902	7	NIC	ENSMUSG00000020514.9	novel	722	7	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	41	junction_2	483.207138698187	10769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTTCATTGAATTATTG	1481	False	NA	13	True	AGTAAA	-16	NA	58062486	58070392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_58062540_58062619_58062848_58063858_58063977_58066102_58066169_58066957_58067036_58068042_58068113_58070103
ENSMUSG00000020515.14_57993694_58008673_1	chr11	+	1577	7	NNC	ENSMUSG00000020515.14	novel	231	3	NA	NA	-1285	589	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	266.148872291848	520	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTGTCATTCTTCTTCT	NA	False	NA	16	True	AGTAAA	-17	NA	57993693	58008673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_57994039_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
ENSMUSG00000020515.14_57993694_58009420_1	chr11	+	2324	7	NNC	ENSMUSG00000020515.14	novel	231	3	NA	NA	-1285	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	266.148872291848	1892	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGAAGTGTGGTCTTTG	NA	False	NA	14	True	AATAAA	-19	NA	57993693	58009420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_57994039_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
ENSMUSG00000020515.14_57994828_58008673_1	chr11	+	1439	7	FSM	ENSMUSG00000020515.14	ENSMUST00000020822.12	2035	7	-151	747	-151	589	multi-exon	FALSE	canonical	3	691	junction_3	50.6603614497787	1150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTGTCATTCTTCTTCT	NA	False	NA	16	True	AGTAAA	-17	NA	57994827	58008673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_57995035_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
ENSMUSG00000020515.14_57994979_58008673_1	chr11	+	1288	7	FSM	ENSMUSG00000020515.14	ENSMUST00000020822.12	2035	7	0	747	0	589	multi-exon	FALSE	canonical	3	691	junction_3	50.6603614497787	978	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTGTCATTCTTCTTCT	NA	False	NA	16	True	AGTAAA	-17	NA	57994978	58008673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_57995035_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
ENSMUSG00000020516.16_86392859_86435600_1	chr11	-	2338	15	FSM	ENSMUSG00000020516.16	ENSMUST00000154617.8	5531	15	31	3162	0	0	multi-exon	FALSE	canonical	3	211	junction_9	22.8179351227342	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCTGTGGCTTGTCTG	NA	False	NA	-4	True	AATAAA	-21	NA	86435600	86392858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
ENSMUSG00000020516.16_86393425_86435600_1	chr11	-	1772	15	FSM	ENSMUSG00000020516.16	ENSMUST00000154617.8	5531	15	31	3728	0	0	multi-exon	FALSE	canonical	3	211	junction_9	22.8179351227342	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCTTTCGATGGAGGAAA	NA	False	NA	NA	False	AATAAA	-35	NA	86435600	86393424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
ENSMUSG00000020521.8_86375511_86386991_1	chr11	+	1564	9	FSM	ENSMUSG00000020521.8	ENSMUST00000020827.7	4452	9	28	2860	0	-2860	multi-exon	TRUE	canonical	3	265	junction_2	21.9146070008111	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTATTTGACAAATAATTGC	NA	False	NA	NA	False	AATAAA	-19	NA	86375510	86386991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_86375626_86376886_86377332_86377481_86377559_86379892_86379994_86381183_86381338_86382504_86382664_86383986_86384053_86386053_86386156_86386646
ENSMUSG00000020521.8_86375511_86387370_2	chr11	+	1728	9	NNC	ENSMUSG00000020521.8	novel	4452	9	NA	NA	0	-2481	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	100.903419169025	293	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACCTGGTGGACCTGTTA	NA	False	NA	3	True	AATAAA	-14	NA	86375510	86387370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_86375626_86376886_86377117_86377481_86377559_86379892_86379994_86381183_86381338_86382504_86382664_86383986_86384053_86386053_86386156_86386646
ENSMUSG00000020523.15_57374618_57409453_1	chr11	-	1768	14	FSM	ENSMUSG00000020523.15	ENSMUST00000020831.13	2557	14	-10	799	-10	0	multi-exon	FALSE	canonical	3	63	junction_13	118.75144346678	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	57409453	57374617	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405115_57409398
ENSMUSG00000020526.13_84801776_84807175_1	chr11	-	963	4	NNC	ENSMUSG00000020526.13	novel	998	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	172.111075245674	1862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTTCCCTTAGTAAAC	NA	False	NA	69	True	AATAAA	-16	NA	84807175	84801775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_84802475_84804047_84804129_84805036_84805112_84807067
ENSMUSG00000020526.13_84801958_84807175_1	chr11	-	799	5	FSM	ENSMUSG00000020526.13	ENSMUST00000103195.5	998	5	17	182	0	159	multi-exon	FALSE	canonical	3	360	junction_2	22.0609949911603	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGGCTATTTATATTTAG	NA	False	NA	-113	True	NA	NA	NA	84807175	84801957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_84802475_84804047_84804129_84805036_84805112_84806924_84806957_84807081
ENSMUSG00000020527.15_84801776_84807175_2	chr11	+	1079	5	NIC	ENSMUSG00000020527.15	novel	3644	23	NA	NA	28364	5123	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2159	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGACACCCGCGCTCACT	NA	False	NA	NA	False	NA	NA	NA	84801775	84807175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_84802475_84804047_84804129_84805036_84805210_84806924_84806957_84807081
ENSMUSG00000020527.15_84801776_84807175_3	chr11	+	976	5	NNC	ENSMUSG00000020527.15	novel	3644	23	NA	NA	28364	5123	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2251	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGACACCCGCGCTCACT	NA	False	NA	NA	False	NA	NA	NA	84801775	84807175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_84802475_84804047_84804129_84805036_84805107_84806924_84806957_84807081
ENSMUSG00000020528.15_61620618_61652875_1	chr11	-	1633	11	FSM	ENSMUSG00000020528.15	ENSMUST00000151966.8	1734	11	-37	138	-9	-138	multi-exon	FALSE	canonical	3	27	junction_8	65.5872701063248	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTAGAATCAAAAAGCTACT	255	False	NA	NA	False	AATAAA	-19	NA	61652875	61620617	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61647020_61647172_61647407_61647504_61652779
ENSMUSG00000020528.15_61620618_61652875_2	chr11	-	1590	11	FSM	ENSMUSG00000020528.15	ENSMUST00000168115.8	1771	11	39	142	-9	-138	multi-exon	FALSE	canonical	3	49	junction_10	57.9565354382058	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTAGAATCAAAAAGCTACT	255	False	NA	NA	False	AATAAA	-19	NA	61652875	61620617	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61652779
ENSMUSG00000020530.15_84723408_84760812_1	chr11	-	2536	13	FSM	ENSMUSG00000020530.15	ENSMUST00000154915.9	2528	13	216	-224	216	-221	multi-exon	FALSE	canonical	3	231	junction_7	87.5523256242929	637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTAGAATGTGGTGTACAT	NA	False	NA	-6	True	AATAAA	-20	NA	84760812	84723407	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020530.15_84723798_84760812_1	chr11	-	2146	13	FSM	ENSMUSG00000020530.15	ENSMUST00000154915.9	2528	13	216	166	216	0	multi-exon	FALSE	canonical	3	231	junction_7	87.5523256242929	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGACTACTGCGCCTTCTC	NA	False	NA	NA	False	AATAAA	-34	NA	84760812	84723797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020530.15_84723798_84761028_1	chr11	-	2362	13	FSM	ENSMUSG00000020530.15	ENSMUST00000154915.9	2528	13	0	166	0	0	multi-exon	FALSE	canonical	3	231	junction_7	87.5523256242929	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGACTACTGCGCCTTCTC	NA	False	NA	NA	False	AATAAA	-34	NA	84761028	84723797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020530.15_84742657_84760812_1	chr11	-	1364	6	NIC	ENSMUSG00000020530.15	novel	386	4	NA	NA	216	551	combination_of_known_junctions	FALSE	canonical	3	79	junction_1	192.335748107314	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTGTTTTGTTTGTAT	NA	False	NA	0	True	ATTAAA	-16	NA	84760812	84742656	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_84743363_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020530.15_84742805_84760812_1	chr11	-	1216	6	NIC	ENSMUSG00000020530.15	novel	386	4	NA	NA	216	403	combination_of_known_junctions	FALSE	canonical	3	79	junction_1	192.335748107314	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTGGCTTTATTTTAAA	NA	False	NA	NA	False	AATAAA	-22	NA	84760812	84742804	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_84743363_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020530.15_84743038_84760812_1	chr11	-	983	6	NIC	ENSMUSG00000020530.15	novel	386	4	NA	NA	216	170	combination_of_known_junctions	FALSE	canonical	3	79	junction_1	192.335748107314	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATATGTGTTAACGAAATCC	NA	False	NA	NA	False	AATAAA	-17	NA	84760812	84743037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_84743363_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020530.15_84748755_84760812_1	chr11	-	739	5	NNC	ENSMUSG00000020530.15	novel	386	4	NA	NA	216	2790	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	230.740519848595	321	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGAGTTAAATATCTCAG	NA	False	NA	-30	True	AATAAA	-15	NA	84760812	84748754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_84748950_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020530.15_84748755_84761028_1	chr11	-	955	5	NNC	ENSMUSG00000020530.15	novel	386	4	NA	NA	0	2790	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	230.740519848595	520	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGAGTTAAATATCTCAG	NA	False	NA	-30	True	AATAAA	-15	NA	84761028	84748754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_84748950_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020530.15_84748755_84761317_1	chr11	-	956	6	NNC	ENSMUSG00000020530.15	novel	386	4	NA	NA	0	2790	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_5	260.709493498031	435	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGAGTTAAATATCTCAG	NA	False	NA	-30	True	AATAAA	-15	NA	84761317	84748754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_84748950_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761186
ENSMUSG00000020530.15_84748755_84761616_1	chr11	-	1011	6	NNC	ENSMUSG00000020530.15	novel	386	4	NA	NA	-1	2790	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	253.787785364071	471	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGAGTTAAATATCTCAG	NA	False	NA	-30	True	AATAAA	-15	NA	84761616	84748754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_84748950_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761430
ENSMUSG00000020530.15_84748904_84760812_1	chr11	-	590	5	NNC	ENSMUSG00000020530.15	novel	386	4	NA	NA	216	2641	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	230.740519848595	71	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGATGTGTATTTGTGTA	NA	False	NA	NA	False	ATTAAA	-21	NA	84760812	84748903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_84748950_84749265_84749365_84751370_84751625_84753063_84753145_84760702
ENSMUSG00000020534.15_60678930_60701988_1	chr11	-	2755	12	FSM	ENSMUSG00000020534.15	ENSMUST00000018744.15	2858	12	103	0	-71	0	multi-exon	TRUE	canonical	3	983	junction_2	78.1211180853749	2339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCCTCATATTATTTATT	NA	False	NA	-8	True	AATAAA	-19	NA	60701988	60678929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
ENSMUSG00000020534.15_60679177_60701988_1	chr11	-	2508	12	FSM	ENSMUSG00000020534.15	ENSMUST00000018744.15	2858	12	103	247	-71	-247	multi-exon	FALSE	canonical	3	983	junction_2	78.1211180853749	2021	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAGGCTTTATATTCCAC	NA	False	NA	NA	False	NA	NA	NA	60701988	60679176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
ENSMUSG00000020534.15_60679727_60701988_1	chr11	-	1958	12	FSM	ENSMUSG00000020534.15	ENSMUST00000018744.15	2858	12	103	797	-71	0	multi-exon	FALSE	canonical	3	983	junction_2	78.1211180853749	1701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTTTCTGCTTACTCGG	NA	False	NA	-16	True	ATTAAA	-12	NA	60701988	60679726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
ENSMUSG00000020537.10_60345450_60359580_1	chr11	+	1747	13	NNC	ENSMUSG00000020537.10	novel	1788	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	139.597312732811	1447	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGGAACTTGTGTTTCT	NA	False	NA	40	True	NA	NA	NA	60345449	60359580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_60345570_60347384_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
ENSMUSG00000020537.10_60345450_60359580_2	chr11	+	1749	13	NNC	ENSMUSG00000020537.10	novel	1788	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_6	138.557048018336	1469	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGGAACTTGTGTTTCT	NA	False	NA	40	True	NA	NA	NA	60345449	60359580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_60345570_60347376_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352345_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
ENSMUSG00000020537.10_60345450_60359580_3	chr11	+	1750	13	NNC	ENSMUSG00000020537.10	novel	1788	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	135.531950927529	1466	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGGAACTTGTGTTTCT	NA	False	NA	40	True	NA	NA	NA	60345449	60359580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_60345570_60347376_60347533_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
ENSMUSG00000020541.13_90528999_90535487_1	chr11	-	954	4	NIC	ENSMUSG00000020541.13	novel	4308	16	NA	NA	5268	5292	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCGCCTGGCGGGGCCGCT	NA	False	NA	NA	False	NA	NA	NA	90535487	90528998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_90529379_90531202_90531359_90534478_90534605_90535195
ENSMUSG00000020541.13_90528999_90535762_1	chr11	-	1229	4	NIC	ENSMUSG00000020541.13	novel	4308	16	NA	NA	4993	5292	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCGCCTGGCGGGGCCGCT	NA	False	NA	NA	False	NA	NA	NA	90535762	90528998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_90529379_90531202_90531359_90534478_90534605_90535195
ENSMUSG00000020544.15_90528999_90535762_1	chr11	+	1241	4	NNC	ENSMUSG00000020544.15	novel	1224	4	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	152.067967260257	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGACAACTTGATTTCT	NA	False	NA	15	True	NA	NA	NA	90528998	90535762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_90529379_90531190_90531359_90534478_90534605_90535195
ENSMUSG00000020547.6_36142254_36206765_1	chr12	-	1392	12	FSM	ENSMUSG00000020547.6	ENSMUST00000020856.6	1871	12	59	420	0	-420	multi-exon	FALSE	canonical	3	931	junction_9	81.950499068161	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAAATTAAAACGC	NA	False	NA	NA	False	AAGAAA	-32	NA	36206765	36142253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
ENSMUSG00000020561.9_33479634_33488024_1	chr12	+	950	4	NNC	ENSMUSG00000020561.9	novel	4325	4	NA	NA	0	310	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	247.517002782974	1400	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAGAAAGCACAGTGAAG	NA	False	NA	NA	False	AAGAAA	-6	NA	33479633	33488024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_33479908_33483511_33483646_33486934_33487144_33487691
ENSMUSG00000020562.8_33445078_33451268_1	chr12	+	450	4	FSM	ENSMUSG00000020562.8	ENSMUST00000020878.8	673	4	225	-2	225	2	multi-exon	FALSE	canonical	3	39	junction_3	13.0213499897497	473	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATGTGTCTGGTTTCATT	NA	False	NA	6	True	AATAAA	-16	NA	33445077	33451268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_33445198_33448277_33448443_33448546_33448635_33451191
ENSMUSG00000020570.16_33004246_33025831_1	chr12	+	884	5	FSM	ENSMUSG00000020570.16	ENSMUST00000020885.13	2019	5	63	1072	0	118	multi-exon	FALSE	canonical	3	256	junction_3	20.9806458432528	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTGGGTTTAAAAATTTG	8488	False	NA	NA	False	AATAAA	-23	NA	33004245	33025831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_33004359_33015371_33015500_33017534_33017743_33024126_33024319_33025588
ENSMUSG00000020570.16_33004246_33026631_1	chr12	+	1684	5	FSM	ENSMUSG00000020570.16	ENSMUST00000020885.13	2019	5	63	272	0	-272	multi-exon	FALSE	canonical	3	256	junction_3	20.9806458432528	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTAAGATTCATTCTTC	8488	False	NA	NA	False	AATAAA	-16	NA	33004245	33026631	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_33004359_33015371_33015500_33017534_33017743_33024126_33024319_33025588
ENSMUSG00000020571.14_17316596_17334372_1	chr12	+	1713	13	NNC	ENSMUSG00000020571.14	novel	2125	13	NA	NA	0	-399	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	806.38125115991	6831	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGATAAATGTATGAAAT	NA	False	NA	15	True	AATAAA	-17	NA	17316595	17334372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330391_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
ENSMUSG00000020571.14_17316596_17334372_2	chr12	+	1726	13	NNC	ENSMUSG00000020571.14	novel	2125	13	NA	NA	0	-399	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	808.211721951618	5721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGATAAATGTATGAAAT	NA	False	NA	15	True	AATAAA	-17	NA	17316595	17334372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330477_17330580_17330641_17330911_17331071_17333200_17333298_17333938
ENSMUSG00000020571.14_17316596_17334372_3	chr12	+	1721	13	NNC	ENSMUSG00000020571.14	novel	2125	13	NA	NA	0	-399	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	796.398385789982	8271	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGATAAATGTATGAAAT	NA	False	NA	15	True	AATAAA	-17	NA	17316595	17334372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333293_17333938
ENSMUSG00000020571.14_17316596_17334372_4	chr12	+	1716	13	NNC	ENSMUSG00000020571.14	novel	2125	13	NA	NA	0	-399	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	805.395809352285	7657	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGATAAATGTATGAAAT	NA	False	NA	15	True	AATAAA	-17	NA	17316595	17334372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_17316653_17320406_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
ENSMUSG00000020571.14_17316596_17334372_5	chr12	+	1723	12	NNC	ENSMUSG00000020571.14	novel	2125	13	NA	NA	0	-399	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	822.823891865564	6732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGATAAATGTATGAAAT	NA	False	NA	15	True	AATAAA	-17	NA	17316595	17334372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_17316653_17320396_17320543_17324333_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
ENSMUSG00000020571.14_17316596_17334372_6	chr12	+	1719	13	NNC	ENSMUSG00000020571.14	novel	2125	13	NA	NA	0	-399	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	808.198352132005	6219	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGATAAATGTATGAAAT	NA	False	NA	15	True	AATAAA	-17	NA	17316595	17334372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328843_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
ENSMUSG00000020571.14_17330911_17334372_1	chr12	+	686	3	NNC	ENSMUSG00000020571.14	novel	2175	13	NA	NA	3669	-399	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1352.5	595	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGATAAATGTATGAAAT	NA	False	NA	15	True	AATAAA	-17	NA	17330910	17334372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_17331071_17333200_17333293_17333938
ENSMUSG00000020571.14_17330911_17334372_2	chr12	+	679	3	NNC	ENSMUSG00000020571.14	novel	2175	13	NA	NA	3669	-399	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1352.5	315	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGATAAATGTATGAAAT	NA	False	NA	15	True	AATAAA	-17	NA	17330910	17334372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_17331071_17333200_17333298_17333950
ENSMUSG00000020577.18_36065554_36092488_1	chr12	-	934	6	FSM	ENSMUSG00000020577.18	ENSMUST00000020896.17	1932	6	0	998	0	-998	multi-exon	FALSE	canonical	3	804	junction_3	64.3913037606787	1059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTCCAGACATTTTTTT	NA	False	NA	-8	True	ATTAAA	-15	NA	36092488	36065553	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_36065772_36070488_36070603_36071799_36071914_36072751_36072833_36073903_36074072_36092249
ENSMUSG00000020585.5_8972048_8988226_1	chr12	+	873	7	FSM	ENSMUSG00000020585.5	ENSMUST00000020909.4	1773	7	384	516	384	-516	multi-exon	FALSE	canonical	3	924	junction_4	59.5158708991886	866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGTCTTGTTTATTTTA	NA	False	NA	13	True	AATAAA	-13	NA	8972047	8988226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_8972295_8981627_8981749_8984695_8984773_8984865_8984989_8985986_8986083_8986696_8986796_8988116
ENSMUSG00000020585.5_8972048_8988742_1	chr12	+	1389	7	FSM	ENSMUSG00000020585.5	ENSMUST00000020909.4	1773	7	384	0	384	0	multi-exon	FALSE	canonical	3	924	junction_4	59.5158708991886	7873	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCTCATGTTTATGCTA	NA	False	NA	38	True	AATAAA	-29	NA	8972047	8988742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_8972295_8981627_8981749_8984695_8984773_8984865_8984989_8985986_8986083_8986696_8986796_8988116
ENSMUSG00000020592.15_8821323_8843074_1	chr12	+	2516	5	FSM	ENSMUSG00000020592.15	ENSMUST00000020911.14	3157	5	0	641	0	12	multi-exon	FALSE	canonical	3	214	junction_4	19.0574788468989	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTACTGCTTCTGCTTCTT	NA	False	NA	17	True	AATAAA	-26	NA	8821322	8843074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_8821702_8839406_8839489_8840384_8840867_8841290_8841427_8841637
ENSMUSG00000020599.14_109138858_109180382_1	chr11	-	951	12	NNC	ENSMUSG00000020599.14	novel	2313	17	NA	NA	8510	7970	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	5.1889902519383	93	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTTTGTTTGATTTTAT	NA	False	NA	NA	False	TTTAAA	-42	NA	109180382	109138857	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_109139004_109139804_109139867_109140852_109140883_109150661_109150725_109159748_109159831_109164101_109164179_109166086_109166146_109166404_109166457_109166645_109166753_109167395_109167447_109172274_109172372_109180257
ENSMUSG00000020599.14_109148402_109180385_1	chr11	-	1743	11	NNC	ENSMUSG00000020599.14	novel	3464	10	NA	NA	8507	-1574	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	10.0776981498753	35	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGATAGATTATGGGGTCC	NA	False	NA	NA	False	NA	NA	NA	109180385	109148401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_109148571_109148676_109149526_109150652_109150725_109159748_109159831_109164101_109164179_109166086_109166146_109166404_109166457_109166645_109166753_109167395_109167447_109172274_109172372_109180257
ENSMUSG00000020605.10_8363432_8372682_1	chr12	+	1396	3	ISM	ENSMUSG00000020605.10	ENSMUST00000020927.10	2959	7	0	21142	0	-1316	5prime_fragment	FALSE	canonical	3	118	junction_1	13.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAGCTGAGTGATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	8363431	8372682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_8363498_8367784_8367951_8371518
ENSMUSG00000020608.8_11316106_11333141_1	chr12	+	677	6	NIC	ENSMUSG00000020608.8	novel	5272	26	NA	NA	0	2738	combination_of_known_junctions	FALSE	canonical	3	100	junction_2	237.697623042385	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAACAAAGGAACAAATAAAT	4536	False	NA	NA	False	AAGAAA	-1	NA	11316105	11333141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_11316290_11321729_11321873_11329605_11329743_11330341_11330404_11332360_11332442_11333071
ENSMUSG00000020608.8_11316106_11368248_1	chr12	+	3846	27	FSM	ENSMUSG00000020608.8	ENSMUST00000020931.6	5603	27	219	1538	0	204	multi-exon	TRUE	canonical	3	574	junction_19	50.8148542090207	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTTTCCAGGTTG	4536	False	NA	15	True	AATAAA	-16	NA	11316105	11368248	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526_11341732_11344485_11344601_11344923_11345085_11347150_11347287_11348262_11348344_11349259_11349431_11350571_11350710_11351522_11351669_11356078_11356205_11359199_11359306_11364607_11364761_11366619_11366718_11367770
ENSMUSG00000020608.8_11316170_11339154_1	chr12	+	1114	11	ISM	ENSMUSG00000020608.8	ENSMUST00000020931.6	5603	27	283	30632	0	1499	5prime_fragment	FALSE	canonical	3	606	junction_10	47.1454133506113	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTACAAAGATATACAAGATA	4600	False	NA	NA	False	TTTAAA	-28	NA	11316169	11339154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128
ENSMUSG00000020610.18_109316808_109327584_1	chr11	+	1390	9	FSM	ENSMUSG00000020610.18	ENSMUST00000092500.11	2816	9	36	1390	0	-231	multi-exon	FALSE	canonical	3	91	junction_1	26.8953411393126	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTCGTGGGTAGAGTTC	NA	False	NA	12	True	AATAAA	-14	NA	109316807	109327584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_109316857_109317311_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
ENSMUSG00000020610.18_109316808_109327815_1	chr11	+	1621	9	FSM	ENSMUSG00000020610.18	ENSMUST00000092500.11	2816	9	36	1159	0	0	multi-exon	FALSE	canonical	3	91	junction_1	26.8953411393126	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTGGCCCTAGGAAT	NA	False	NA	19	True	AATAAA	-15	NA	109316807	109327815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_109316857_109317311_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
ENSMUSG00000020610.18_109317046_109327584_1	chr11	+	1607	8	FSM	ENSMUSG00000020610.18	ENSMUST00000103061.3	1832	8	-6	231	0	-231	multi-exon	FALSE	canonical	3	149	junction_3	12.4638252063927	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTCGTGGGTAGAGTTC	NA	False	NA	12	True	AATAAA	-14	NA	109317045	109327584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
ENSMUSG00000020610.18_109343552_109364025_1	chr11	+	2259	6	NIC	ENSMUSG00000020610.18	novel	1152	2	NA	NA	12570	20386	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCCGCGCCCCGGCCCCGC	NA	False	NA	NA	False	NA	NA	NA	109343551	109364025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109363763
ENSMUSG00000020610.18_109343552_109365804_1	chr11	+	2140	6	NNC	ENSMUSG00000020610.18	novel	1152	2	NA	NA	12570	22165	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	401	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACCGCCTGTCGCAGGCT	NA	False	NA	NA	False	NA	NA	NA	109343551	109365804	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109365661
ENSMUSG00000020612.17_109541747_109558621_2	chr11	+	1491	11	NNC	ENSMUSG00000020612.17	novel	3359	11	NA	NA	0	819	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	483.487497253031	2315	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTCACCGCTTCTC	NA	False	NA	28	True	AATAAA	-17	NA	109541746	109558621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557476_109557552_109558255
ENSMUSG00000020612.17_109541747_109558621_3	chr11	+	1498	11	FSM	ENSMUSG00000020612.17	ENSMUST00000049527.7	3359	11	0	1861	0	819	multi-exon	FALSE	canonical	3	1417	junction_9	119.858458191318	2906	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTCACCGCTTCTC	NA	False	NA	28	True	AATAAA	-17	NA	109541746	109558621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
ENSMUSG00000020612.17_109541747_109560003_1	chr11	+	2880	11	FSM	ENSMUSG00000020612.17	ENSMUST00000049527.7	3359	11	0	479	0	-479	multi-exon	FALSE	canonical	3	1417	junction_9	119.858458191318	3019	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAATTTGATATTTGTTT	NA	False	NA	11	True	AATAAA	-21	NA	109541746	109560003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
ENSMUSG00000020621.7_10440878_10445562_1	chr12	+	1374	2	FSM	ENSMUSG00000020621.7	ENSMUST00000020947.7	1480	2	106	0	106	0	multi-exon	FALSE	canonical	3	67	junction_1	0	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGTGCATTTCTTTAA	NA	False	NA	11	True	AATAAA	-17	NA	10440877	10445562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_10441227_10444537
ENSMUSG00000020621.7_10441082_10445562_1	chr12	+	1170	2	FSM	ENSMUSG00000020621.7	ENSMUST00000020947.7	1480	2	310	0	310	0	multi-exon	FALSE	canonical	3	67	junction_1	0	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGTGCATTTCTTTAA	NA	False	NA	11	True	AATAAA	-17	NA	10441081	10445562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_10441227_10444537
ENSMUSG00000020623.12_110381648_110404467_1	chr11	+	1588	9	ISM	ENSMUSG00000020623.12	ENSMUST00000020949.12	2068	12	91700	0	11783	0	3prime_fragment	FALSE	canonical	3	81	junction_4	9.25253343684853	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGCATAGTATTAGTG	NA	False	NA	14	True	AGTAAA	-24	NA	110381647	110404467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_110381702_110383338_110383459_110383721_110383839_110385120_110385173_110387164_110387293_110388722_110388801_110390208_110390349_110397531_110397578_110403614
ENSMUSG00000020629.13_28725230_28731607_1	chr12	+	1085	4	FSM	ENSMUSG00000020629.13	ENSMUST00000020957.13	1652	4	0	567	0	-122	multi-exon	FALSE	canonical	3	316	junction_2	13.6950923894494	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTATGTGATTTTTATA	NA	False	NA	8	True	ATTAAA	-15	NA	28725229	28731607	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_28725372_28727776_28727897_28729388_28729569_28730964
ENSMUSG00000020630.10_28699623_28709587_1	chr12	+	1574	8	NNC	ENSMUSG00000020630.10	novel	1455	8	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	86.8063761412461	1701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACACATCTAGTTTGAGTT	NA	False	NA	12	True	AATAAA	-20	NA	28699622	28709587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_28699816_28702023_28702140_28703061_28703366_28705583_28705684_28707270_28707326_28707631_28707717_28708169_28708295_28708991
ENSMUSG00000020630.10_28699623_28709587_2	chr12	+	1394	8	NNC	ENSMUSG00000020630.10	novel	1455	8	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	86.0924989029064	1623	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACACATCTAGTTTGAGTT	NA	False	NA	12	True	AATAAA	-20	NA	28699622	28709587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_28699778_28702023_28702140_28703061_28703224_28705583_28705684_28707270_28707326_28707631_28707717_28708169_28708295_28708991
ENSMUSG00000020634.13_4930176_4957481_1	chr12	-	1328	7	FSM	ENSMUSG00000020634.13	ENSMUST00000020962.12	2696	7	224	1144	-42	214	multi-exon	FALSE	canonical	3	1036	junction_3	130.609362434534	857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAGCATCAATGTAGTT	NA	False	NA	-45	True	AATACA	-23	NA	4957481	4930175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_4930772_4933822_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957348
ENSMUSG00000020635.9_4883174_4891591_1	chr12	-	1021	4	FSM	ENSMUSG00000020635.9	ENSMUST00000219880.2	246	4	-156	-619	0	0	multi-exon	FALSE	canonical	1	5	junction_1	23.2999761564017	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGTTGTGGGAGGTTCTT	NA	False	NA	0	True	AATAAA	-29	NA	4891591	4883173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_4883841_4884738_4884852_4888168_4888217_4891398
ENSMUSG00000020636.15_28603754_28615479_1	chr12	-	1054	8	ISM	ENSMUSG00000020636.15	ENSMUST00000110917.2	1384	12	17035	0	17035	0	3prime_fragment	FALSE	canonical	1	2	junction_3	2.37332110369088	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCTTGATCTCCTGTTG	7980	False	NA	NA	False	AATAAA	-17	NA	28615479	28603753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_28604047_28605262_28605388_28607340_28607450_28609237_28609312_28609868_28610025_28613369_28613503_28614233_28614314_28615395
ENSMUSG00000020646.18_24881608_25010288_2	chr12	+	2780	13	FSM	ENSMUSG00000020646.18	ENSMUST00000110942.11	2351	13	-14	-415	0	3	multi-exon	FALSE	canonical	3	86	junction_3	25.3874148611735	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGTTAAAATGGGTGTT	NA	False	NA	NA	False	ATTAAA	-15	NA	24881607	25010288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_24881774_24928189_24928336_24932715_24932794_24974197_24974294_24984565_24984622_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
ENSMUSG00000020648.4_31690049_31704834_1	chr12	-	1802	7	NNC	ENSMUSG00000020648.4	novel	1773	7	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	41.3145118437685	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGGTATGACTCGCCTGTA	9051	False	NA	-5	True	AATAAA	-17	NA	31704834	31690048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_31690944_31691500_31691748_31692762_31692886_31696619_31696738_31698764_31698887_31702289_31702441_31704688
ENSMUSG00000020649.12_24758240_24763340_1	chr12	+	1388	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	0	805	0	0	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	1208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTCTAAAAAGCTGTGTAG	NA	False	NA	56	True	ATTAAA	-13	NA	24758239	24763340	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
ENSMUSG00000020649.12_24758240_24763797_1	chr12	+	1845	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	0	348	0	-348	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	1518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTCACTTTTTTTTTTT	NA	False	NA	NA	False	AGTAAA	-19	NA	24758239	24763797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
ENSMUSG00000020650.16_31666779_31684657_1	chr12	-	961	6	ISM	ENSMUSG00000020650.16	ENSMUST00000177962.9	6155	8	-23	25813	0	17295	5prime_fragment	FALSE	canonical	3	313	junction_1	47.6931860961291	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACATTTTCTTCTGTCAT	NA	False	NA	NA	False	TATAAA	-20	NA	31684657	31666778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_31667180_31674113_31674250_31676724_31676876_31680791_31680893_31684261_31684380_31684603
ENSMUSG00000020652.18_4263482_4283938_1	chr12	-	2147	7	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_6	14.9666295470958	196	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACCTGCAGATTCTTTGT	NA	False	NA	-9	True	AATAAA	-19	NA	4283938	4263481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283781
ENSMUSG00000020652.18_4263482_4283938_2	chr12	-	2217	7	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	27.9026084005699	190	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACCTGCAGATTCTTTGT	NA	False	NA	-9	True	AATAAA	-19	NA	4283938	4263481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281445_4281683_4283530_4283658_4283781
ENSMUSG00000020654.16_4263482_4283938_1	chr12	+	2177	7	NIC	ENSMUSG00000020654.16	novel	5621	21	NA	NA	10214	20413	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAACGTAACCCACTGATC	NA	False	NA	NA	False	NA	NA	NA	4263481	4283938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283751
ENSMUSG00000020664.11_31381561_31401424_1	chr12	-	2231	14	FSM	ENSMUSG00000020664.11	ENSMUST00000110857.5	2544	14	28	285	-11	-285	multi-exon	FALSE	canonical	3	710	junction_4	70.0417457938204	3374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGGTTATTCTGAGTG	NA	False	NA	-10	True	AATAAA	-18	NA	31401424	31381560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_31382242_31382337_31382428_31383423_31383562_31383865_31384056_31384611_31384783_31385464_31385656_31390278_31390381_31390862_31391007_31391376_31391478_31392742_31392813_31393373_31393443_31394821_31394902_31399595_31399675_31401299
ENSMUSG00000020664.11_31381708_31401424_1	chr12	-	2084	14	FSM	ENSMUSG00000020664.11	ENSMUST00000110857.5	2544	14	28	432	-11	-432	multi-exon	FALSE	canonical	3	710	junction_4	70.0417457938204	3088	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTTAACTTCCAAATTG	NA	False	NA	-4	True	AATAAA	-16	NA	31401424	31381707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_31382242_31382337_31382428_31383423_31383562_31383865_31384056_31384611_31384783_31385464_31385656_31390278_31390381_31390862_31391007_31391376_31391478_31392742_31392813_31393373_31393443_31394821_31394902_31399595_31399675_31401299
ENSMUSG00000020668.11_3438133_3454066_1	chr12	+	1921	6	ISM	ENSMUSG00000020668.11	ENSMUST00000219895.2	2962	8	752	867	752	2	3prime_fragment	FALSE	canonical	3	43	junction_1	11.2071405808975	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATTGACCTTTATTTT	NA	False	NA	6	True	AGTAAA	-21	NA	3438132	3454066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_3438258_3439622_3439742_3440437_3440555_3451682_3451792_3452433_3452607_3452788
ENSMUSG00000020669.16_30962186_31010156_1	chr12	+	1226	10	FSM	ENSMUSG00000020669.16	ENSMUST00000020997.15	1750	10	519	5	0	1	multi-exon	FALSE	canonical	3	40	junction_1	6.36153564813317	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAGTACTTTGTGTTCAC	8558	False	NA	11	True	AATAAA	-19	NA	30962185	31010156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_30962227_30972233_30972345_30974762_30974877_30976808_30976874_30989572_30989686_30990289_30990419_30991965_30992129_30992788_30992868_31008846_31008904_31009802
ENSMUSG00000020673.15_30104658_30124149_1	chr12	-	562	2	ISM	ENSMUSG00000020673.15	ENSMUST00000021005.15	3299	17	58474	0	20849	0	3prime_fragment	FALSE	canonical	3	5	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCTTTATAAGCCGTAG	8493	False	NA	NA	False	ATTAAA	-20	NA	30124149	30104657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_30105163_30124092
ENSMUSG00000020677.8_83832991_83837276_1	chr11	+	779	4	ISM	ENSMUSG00000020677.8	ENSMUST00000049257.8	3194	15	103	16638	103	-5711	5prime_fragment	FALSE	canonical	3	311	junction_3	37.1872140511882	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGATGCCATCATTTCCTT	NA	False	NA	NA	False	TATAAA	-16	NA	83832990	83837276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_83833091_83834068_83834268_83835361_83835496_83836930
ENSMUSG00000020677.8_83832991_83839927_1	chr11	+	1012	7	NNC	ENSMUSG00000020677.8	novel	3194	15	NA	NA	103	-3060	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	164.202534152863	156	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGATCAGTGTCTTCAGC	NA	False	NA	NA	False	NA	NA	NA	83832990	83839927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_83833091_83834068_83834268_83835361_83835496_83836930_83837117_83839270_83839415_83839646_83839757_83839788
ENSMUSG00000020680.16_83363941_83373504_1	chr11	+	837	2	FSM	ENSMUSG00000020680.16	ENSMUST00000152405.2	649	2	4	-192	0	192	multi-exon	FALSE	canonical	3	40	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTATGGGTGTTCAGTT	8683	False	NA	NA	False	ATTAAA	-4	NA	83363940	83373504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_83364033_83372759
ENSMUSG00000020680.16_83395576_83397569_1	chr11	+	681	2	ISM	ENSMUSG00000020680.16	ENSMUST00000133170.2	1260	11	15723	0	15723	0	3prime_fragment	FALSE	canonical	3	139	junction_1	0	753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGAGTGCATTATTTGTC	NA	False	NA	41	True	AATAAA	-21	NA	83395575	83397569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_83395931_83397243
ENSMUSG00000020680.16_83395714_83397569_1	chr11	+	543	2	ISM	ENSMUSG00000020680.16	ENSMUST00000133170.2	1260	11	15861	0	15861	0	3prime_fragment	FALSE	canonical	3	139	junction_1	0	537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGAGTGCATTATTTGTC	NA	False	NA	41	True	AATAAA	-21	NA	83395713	83397569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_83395931_83397243
ENSMUSG00000020680.16_83395819_83397569_1	chr11	+	438	2	ISM	ENSMUSG00000020680.16	ENSMUST00000133170.2	1260	11	15966	0	15966	0	3prime_fragment	FALSE	canonical	3	139	junction_1	0	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGAGTGCATTATTTGTC	NA	False	NA	41	True	AATAAA	-21	NA	83395818	83397569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_83395931_83397243
ENSMUSG00000020691.14_105017305_105019132_1	chr11	+	1659	2	ISM	ENSMUSG00000020691.14	ENSMUST00000021030.8	1867	9	54	12088	0	-7350	5prime_fragment	FALSE	canonical	3	278	junction_1	0	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACTTA	NA	False	NA	NA	False	NA	NA	NA	105017304	105019132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_105017433_105017601
ENSMUSG00000020691.14_105017305_105030839_1	chr11	+	1432	9	FSM	ENSMUSG00000020691.14	ENSMUST00000021030.8	1867	9	54	381	0	-381	multi-exon	FALSE	canonical	3	226	junction_6	21.0698243941424	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGCGTATTTTCTGGAG	NA	False	NA	NA	False	AAAAAG	-24	NA	105017304	105030839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_105017433_105017601_105017694_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
ENSMUSG00000020691.14_105017305_105031972_1	chr11	+	2565	9	FSM	ENSMUSG00000020691.14	ENSMUST00000021030.8	1867	9	54	-752	0	752	multi-exon	FALSE	canonical	3	226	junction_6	21.0698243941424	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGGTGGTGTGGCTT	NA	False	NA	4	True	AATAAA	-14	NA	105017304	105031972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_105017433_105017601_105017694_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
ENSMUSG00000020705.7_106127822_106139756_1	chr11	+	2530	9	ISM	ENSMUSG00000020705.7	ENSMUST00000021046.6	4011	18	20070	209	0	-209	3prime_fragment	FALSE	canonical	3	440	junction_2	33.1339610520686	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAATTTTGTGATTTTT	NA	False	NA	8	True	TATAAA	-16	NA	106127821	106139756	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
ENSMUSG00000020705.7_106127822_106139966_1	chr11	+	2740	9	ISM	ENSMUSG00000020705.7	ENSMUST00000021046.6	4011	18	20070	-1	0	1	3prime_fragment	FALSE	canonical	3	440	junction_2	33.1339610520686	685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTTATCTTTTTATTC	NA	False	NA	29	True	ATTAAA	-16	NA	106127821	106139966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
ENSMUSG00000020706.14_106139968_106140560_1	chr11	-	506	2	ISM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	6345	0	964	0	3prime_fragment	FALSE	canonical	3	951	junction_1	0	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTTTTCTGATAGTTTA	NA	False	NA	-14	True	AATAAA	-13	NA	106140560	106139967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_106140443_106140529
ENSMUSG00000020706.14_106139968_106146630_1	chr11	-	2869	21	FSM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	275	0	0	0	multi-exon	FALSE	canonical	3	632	junction_7	76.5847732907789	1638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTTTTCTGATAGTTTA	NA	False	NA	-14	True	AATAAA	-13	NA	106146630	106139967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
ENSMUSG00000020707.7_80074677_80090583_1	chr11	+	1821	4	NIC	ENSMUSG00000020707.7	novel	1984	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_2	26.4491125665032	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGAGTTCATTGGGT	NA	False	NA	34	True	NA	NA	NA	80074676	80090583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_80075082_80080049_80080194_80087698_80087774_80089386
ENSMUSG00000020707.7_80074677_80090583_2	chr11	+	1840	4	NIC	ENSMUSG00000020707.7	novel	1984	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	17.6131264181639	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGAGTTCATTGGGT	NA	False	NA	34	True	NA	NA	NA	80074676	80090583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_80075082_80084711_80084875_80087698_80087774_80089386
ENSMUSG00000020709.16_80055988_80068055_1	chr11	+	1079	3	NNC	ENSMUSG00000020709.16	novel	601	5	NA	NA	11046	-1729	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGGGGCGTCTTGTCCAGT	NA	False	NA	NA	False	NA	NA	NA	80055987	80068055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_80056876_80067781_80067899_80067981
ENSMUSG00000020713.7_106191097_106192537_1	chr11	-	891	4	ISM	ENSMUSG00000020713.7	ENSMUST00000103071.4	862	5	154	0	154	0	3prime_fragment	FALSE	canonical	1	2	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCACCCGGCTAGAGGTC	7211	False	NA	NA	False	AATAAA	-14	NA	106192537	106191096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_106191393_106191590_106191753_106191920_106192038_106192221
ENSMUSG00000020717.20_106545044_106615248_1	chr11	-	3283	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9028	0	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_16	418.075950037789	733	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	396	False	NA	-10	True	AATAAA	-18	NA	106615248	106545043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
ENSMUSG00000020717.20_106545044_106615248_2	chr11	-	3288	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9028	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_15	368.337888357959	805	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	396	False	NA	-10	True	AATAAA	-18	NA	106615248	106545043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
ENSMUSG00000020718.13_106659079_106670364_1	chr11	-	1104	8	NNC	ENSMUSG00000020718.13	novel	1770	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	20.9469689980217	111	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	4296	False	NA	NA	False	AATAAA	-33	NA	106670364	106659078	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106670209
ENSMUSG00000020719.15_106672374_106679320_1	chr11	-	2322	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	1167.70350355825	5041	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	9654	False	NA	-9	True	AATAAA	-45	NA	106679320	106672373	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677361_106677730_106677901_106679098
ENSMUSG00000020719.15_106672374_106680011_1	chr11	-	2463	14	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	497	junction_13	995.534526816042	4996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	8963	False	NA	-9	True	AATAAA	-45	NA	106680011	106672373	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679841
ENSMUSG00000020720.14_107370354_107388617_1	chr11	+	1478	11	FSM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	44	382	0	58	multi-exon	FALSE	canonical	3	2673	junction_3	110.503800839609	11127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGGTGTATATGTTGTT	NA	False	NA	12	True	ATTAAA	-15	NA	107370353	107388617	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
ENSMUSG00000020728.18_108316092_108363011_1	chr11	+	824	6	ISM	ENSMUSG00000020728.18	ENSMUST00000150863.9	3453	27	74	388430	0	-608	5prime_fragment	FALSE	canonical	3	43	junction_4	6.34350061086148	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTATTAAACGTTTATTA	NA	False	NA	NA	False	ATTAAA	-21	NA	108316091	108363011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_108316178_108324951_108325066_108328031_108328223_108331249_108331423_108361117_108361209_108362842
ENSMUSG00000020736.13_115381246_115382650_1	chr11	-	795	5	NNC	ENSMUSG00000020736.13	novel	858	5	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	85.4382086656784	498	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGATCTTTGATGCT	NA	False	NA	-8	True	AATAAA	-19	NA	115382650	115381245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_115381571_115381678_115381794_115381988_115382025_115382096_115382198_115382432
ENSMUSG00000020736.13_115381246_115382650_2	chr11	-	814	5	NNC	ENSMUSG00000020736.13	novel	858	5	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	86.0243424851361	1427	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGATCTTTGATGCT	NA	False	NA	-8	True	AATAAA	-19	NA	115382650	115381245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_115381565_115381678_115381794_115381963_115382025_115382096_115382198_115382432
ENSMUSG00000020736.13_115381246_115382650_3	chr11	-	1098	3	FSM	ENSMUSG00000020736.13	ENSMUST00000124778.8	907	3	27	-218	-9	0	multi-exon	FALSE	canonical	3	183	junction_2	15.5	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGATCTTTGATGCT	NA	False	NA	-8	True	AATAAA	-19	NA	115382650	115381245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115382025_115382096_115382198_115382432
ENSMUSG00000020737.13_115388179_115405213_1	chr11	-	1378	4	NNC	ENSMUSG00000020737.13	novel	1375	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	825.422046928452	13622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCGTGTTTTGTCTTTCT	NA	False	NA	NA	False	AGTAAA	-19	NA	115405213	115388178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_115389126_115392808_115392929_115393857_115394001_115405045
ENSMUSG00000020737.13_115388858_115405213_2	chr11	-	696	5	FSM	ENSMUSG00000020737.13	ENSMUST00000021083.7	1375	5	0	679	0	0	multi-exon	FALSE	canonical	3	1461	junction_2	125.475844288851	9568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTACCGCTGTCTTTCCCT	NA	False	NA	-12	True	ATTAAA	-14	NA	115405213	115388857	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115389126_115391491_115391511_115392830_115392929_115393857_115394001_115405045
ENSMUSG00000020738.17_115413928_115425460_1	chr11	-	819	3	ISM	ENSMUSG00000020738.17	ENSMUST00000021084.10	1000	4	1595	0	1183	0	3prime_fragment	FALSE	canonical	0	0	junction_2	1909.5	2104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115425460	115413927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_115414596_115421171_115421244_115425381
ENSMUSG00000020739.12_115455351_115474732_1	chr11	+	1976	18	NIC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_11	247.898824098904	899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	NA	False	NA	12	True	AATAAA	-18	NA	115455350	115474732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
ENSMUSG00000020739.12_115455351_115474732_2	chr11	+	2054	19	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	240.944546921814	1673	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	NA	False	NA	12	True	AATAAA	-18	NA	115455350	115474732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_115455383_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
ENSMUSG00000020739.12_115455351_115474732_3	chr11	+	1974	19	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_16	235.991113297843	963	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	NA	False	NA	12	True	AATAAA	-18	NA	115455350	115474732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473788_115473855_115474151_115474254_115474546
ENSMUSG00000020739.12_115455351_115474732_4	chr11	+	2100	19	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	235.082307624425	1668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	NA	False	NA	12	True	AATAAA	-18	NA	115455350	115474732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_115455429_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
ENSMUSG00000020740.14_115475081_115477217_1	chr11	-	1773	3	ISM	ENSMUSG00000020740.14	ENSMUST00000123485.8	1221	8	2664	-1449	1636	0	3prime_fragment	FALSE	canonical	3	362	junction_2	3.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCATCTTTCAATACAG	NA	False	NA	-2	True	AATAAA	-15	NA	115477217	115475080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_115476667_115476911_115477023_115477141
ENSMUSG00000020743.16_115498744_115503746_1	chr11	-	1266	6	FSM	ENSMUSG00000020743.16	ENSMUST00000106506.8	993	6	-42	-231	0	0	multi-exon	FALSE	canonical	2	5	junction_2	146.078608974757	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503746	115498743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115499440_115499886_115499923_115500105_115500262_115500364_115500475_115502728_115502861_115503610
ENSMUSG00000020743.16_115498744_115503746_2	chr11	-	1896	4	FSM	ENSMUSG00000020743.16	ENSMUST00000142637.2	621	4	-16	-1259	0	0	multi-exon	FALSE	canonical	3	324	junction_3	34.4222150491349	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503746	115498743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115500262_115500364_115500475_115502728_115502861_115503610
ENSMUSG00000020743.16_115498744_115503746_3	chr11	-	1319	6	NNC	ENSMUSG00000020743.16	novel	1372	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	147.293448598368	1207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503746	115498743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728_115502848_115503601
ENSMUSG00000020743.16_115498744_115503746_4	chr11	-	1449	5	NIC	ENSMUSG00000020743.16	novel	1372	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	324	junction_4	32.8129166640212	1087	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503746	115498743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_115499440_115499886_115500262_115500364_115500475_115502728_115502861_115503610
ENSMUSG00000020743.16_115498744_115503746_5	chr11	-	1431	5	NNC	ENSMUSG00000020743.16	novel	1372	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	33	junction_4	150.308017084918	291	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503746	115498743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_115499440_115499886_115500262_115500364_115500475_115502728_115502861_115503628
ENSMUSG00000020743.16_115498744_115503746_6	chr11	-	1208	6	NNC	ENSMUSG00000020743.16	novel	1372	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	138.613707835841	110	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503746	115498743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_115499325_115499886_115499980_115500105_115500262_115500364_115500475_115502728_115502861_115503610
ENSMUSG00000020743.16_115498744_115503746_7	chr11	-	1334	5	NNC	ENSMUSG00000020743.16	novel	1372	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	20	junction_1	154.741720295465	164	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503746	115498743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_115499325_115499886_115500262_115500364_115500475_115502728_115502861_115503610
ENSMUSG00000020744.14_115505808_115507860_1	chr11	-	807	3	NNC	ENSMUSG00000020744.14	novel	826	5	NA	NA	871	212	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	83.5	120	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTGTGTCACTCCTATA	6523	False	NA	-11	True	ATTAAA	-13	NA	115507860	115505807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_115506418_115507346_115507478_115507794
ENSMUSG00000020745.16_74568197_74614874_1	chr11	-	1759	11	FSM	ENSMUSG00000020745.16	ENSMUST00000021091.15	5803	11	622	3422	-190	-3421	multi-exon	FALSE	canonical	3	936	junction_5	79.0964600977819	1899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAATAGTTGACAGTGTCA	NA	False	NA	NA	False	AATAAA	-19	NA	74614874	74568196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_74568569_74570283_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614824
ENSMUSG00000020745.16_74568386_74614874_1	chr11	-	1570	11	FSM	ENSMUSG00000020745.16	ENSMUST00000021091.15	5803	11	622	3611	-190	-3610	multi-exon	FALSE	canonical	3	936	junction_5	79.0964600977819	1280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGGATGTAGATTGA	NA	False	NA	-8	True	AATAAA	-20	NA	74614874	74568385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_74568569_74570283_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614824
ENSMUSG00000020745.16_74568386_74615176_1	chr11	-	1600	11	NNC	ENSMUSG00000020745.16	novel	5803	11	NA	NA	-15	-3610	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	315.952781282267	399	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGGATGTAGATTGA	NA	False	NA	-8	True	AATAAA	-20	NA	74615176	74568385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_74568569_74570283_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74615096
ENSMUSG00000020745.16_74568386_74615176_2	chr11	-	1872	11	FSM	ENSMUSG00000020745.16	ENSMUST00000021091.15	5803	11	320	3611	-15	-3610	multi-exon	FALSE	canonical	3	936	junction_5	79.0964600977819	2029	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGGATGTAGATTGA	NA	False	NA	-8	True	AATAAA	-20	NA	74615176	74568385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_74568569_74570283_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614824
ENSMUSG00000020755.10_115824463_115855475_1	chr11	+	1223	11	FSM	ENSMUSG00000020755.10	ENSMUST00000140991.2	3654	11	355	2076	0	-886	multi-exon	FALSE	canonical	3	284	junction_4	19.7585424563656	1341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGCATGTCAGGTGGAC	399	False	NA	16	True	ATTAAA	-17	NA	115824462	115855475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_115824608_115826191_115826302_115828835_115828884_115842792_115842836_115848186_115848276_115851325_115851418_115852181_115852243_115852564_115852617_115853319_115853379_115854768_115854854_115855036
ENSMUSG00000020755.10_115824463_115855475_2	chr11	+	1175	10	NIC	ENSMUSG00000020755.10	novel	3654	11	NA	NA	0	-886	combination_of_known_splicesites	FALSE	canonical	3	29	junction_2	90.9346529718518	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGCATGTCAGGTGGAC	399	False	NA	16	True	ATTAAA	-17	NA	115824462	115855475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_115824608_115826191_115826302_115842792_115842836_115848186_115848276_115851325_115851418_115852181_115852243_115852564_115852617_115853319_115853379_115854768_115854854_115855036
ENSMUSG00000020755.10_115824463_115855475_3	chr11	+	1218	11	NNC	ENSMUSG00000020755.10	novel	3654	11	NA	NA	0	-886	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	98.0122441330674	1214	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGCATGTCAGGTGGAC	399	False	NA	16	True	ATTAAA	-17	NA	115824462	115855475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_115824608_115826191_115826302_115828835_115828884_115842792_115842836_115848186_115848276_115851325_115851418_115852181_115852243_115852564_115852617_115853324_115853379_115854768_115854854_115855036
ENSMUSG00000020755.10_115824463_115856361_1	chr11	+	2109	11	FSM	ENSMUSG00000020755.10	ENSMUST00000140991.2	3654	11	355	1190	0	0	multi-exon	FALSE	canonical	3	284	junction_4	19.7585424563656	1432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCTGTCCTTGGGTGCAC	399	False	NA	NA	False	AATGAA	-17	NA	115824462	115856361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_115824608_115826191_115826302_115828835_115828884_115842792_115842836_115848186_115848276_115851325_115851418_115852181_115852243_115852564_115852617_115853319_115853379_115854768_115854854_115855036
ENSMUSG00000020770.14_115921148_115932231_1	chr11	+	827	3	FSM	ENSMUSG00000020770.14	ENSMUST00000176788.2	471	3	-1	-355	0	355	multi-exon	FALSE	canonical	2	5	junction_2	1	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTAGTTTTTTATTAAT	8822	False	NA	NA	False	ATTAAA	-18	NA	115921147	115932231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_115921318_115929365_115929610_115931818
ENSMUSG00000020773.12_115996578_115998873_1	chr11	-	1018	5	NNC	ENSMUSG00000020773.12	novel	1503	4	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	54.7083174663597	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	115998873	115996577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_115996921_115997333_115997468_115997757_115997830_115998249_115998449_115998603
ENSMUSG00000020773.12_115996578_116000472_1	chr11	-	1188	7	NNC	ENSMUSG00000020773.12	novel	2192	6	NA	NA	591	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	49.5527216429352	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	116000472	115996577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_115996921_115997333_115997468_115997757_115997830_115998249_115998449_115998603_115998835_115999091_115999188_116000359
ENSMUSG00000020774.10_73195818_73215460_1	chr11	-	1683	7	NIC	ENSMUSG00000020774.10	novel	1530	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_5	6.39444203108363	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAGTGATGACTGTGATA	NA	False	NA	NA	False	ATTAAA	-16	NA	73215460	73195817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_73196460_73199534_73199645_73204335_73204444_73210620_73210715_73212911_73213108_73213904_73214058_73215080
ENSMUSG00000020774.10_73196065_73215460_2	chr11	-	1436	7	NIC	ENSMUSG00000020774.10	novel	1530	6	NA	NA	0	-247	combination_of_known_junctions	FALSE	canonical	3	7	junction_5	6.39444203108363	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCAAGTGTGCTTCTGGT	NA	False	NA	NA	False	GATAAA	-42	NA	73215460	73196064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_73196460_73199534_73199645_73204335_73204444_73210620_73210715_73212911_73213108_73213904_73214058_73215080
ENSMUSG00000020775.14_116022643_116029630_1	chr11	-	1421	8	NIC	ENSMUSG00000020775.14	novel	1411	9	NA	NA	-15	0	intron_retention	FALSE	canonical	3	763	junction_7	35.5883493891596	2954	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTCTTCACTTTCGGG	471	False	NA	-2	True	AATAAA	-20	NA	116029630	116022642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116026152_116029267_116029448_116029536
ENSMUSG00000020775.14_116028864_116029630_1	chr11	-	678	2	FSM	ENSMUSG00000020775.14	ENSMUST00000138457.2	995	2	61	256	-15	-256	multi-exon	FALSE	canonical	3	763	junction_1	0	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCATTATTTGGCTTTTT	471	False	NA	NA	False	NA	NA	NA	116029630	116028863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116029448_116029536
ENSMUSG00000020777.17_116068695_116089555_1	chr11	-	1574	9	ISM	ENSMUSG00000020777.17	ENSMUST00000066587.12	3987	14	316	5981	0	1851	5prime_fragment	TRUE	canonical	3	53	junction_7	16.7663166795811	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAATTCGAAAGTTCCAG	NA	False	NA	NA	False	NA	NA	NA	116089555	116068694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116074289_116074451_116089047_116089208_116089421
ENSMUSG00000020778.13_116089681_116106144_1	chr11	+	744	3	NIC	ENSMUSG00000020778.13	novel	902	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	63.5	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGTGTGCTGATGCGG	9067	False	NA	7	True	AATAAA	-14	NA	116089680	116106144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_116089810_116095670_116095806_116105664
ENSMUSG00000020778.13_116089681_116106144_2	chr11	+	907	4	NNC	ENSMUSG00000020778.13	novel	902	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	57.5113515365059	2011	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGTGTGCTGATGCGG	9067	False	NA	7	True	AATAAA	-14	NA	116089680	116106144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_116089810_116095670_116095806_116096436_116096600_116105664
ENSMUSG00000020780.16_116135992_116164961_1	chr11	-	2444	16	FSM	ENSMUSG00000020780.16	ENSMUST00000021133.16	2526	16	82	0	0	0	multi-exon	FALSE	canonical	3	572	junction_9	48.1105209099031	1138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCTGGTTTTTGCA	9899	False	NA	-2	True	ATTAAA	-17	NA	116164961	116135991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116159099_116159214_116162738_116162806_116164751
ENSMUSG00000020780.16_116136412_116164961_1	chr11	-	2024	16	FSM	ENSMUSG00000020780.16	ENSMUST00000021133.16	2526	16	82	420	0	-420	multi-exon	FALSE	canonical	3	572	junction_9	48.1105209099031	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGCGGCCGTTCATCTT	9899	False	NA	-22	True	ATTAAA	-41	NA	116164961	116136411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116159099_116159214_116162738_116162806_116164751
ENSMUSG00000020780.16_116136412_116165043_1	chr11	-	2106	16	FSM	ENSMUSG00000020780.16	ENSMUST00000021133.16	2526	16	0	420	0	-420	multi-exon	FALSE	canonical	3	572	junction_9	48.1105209099031	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGCGGCCGTTCATCTT	9817	False	NA	-22	True	ATTAAA	-41	NA	116165043	116136411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116159099_116159214_116162738_116162806_116164751
ENSMUSG00000020781.15_115705572_115713920_1	chr11	+	2052	10	NIC	ENSMUSG00000020781.15	novel	1979	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	180	junction_1	22.7063922038174	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTCAATACTTACAGGGG	5954	False	NA	NA	False	ATTAAA	-21	NA	115705571	115713920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_115705906_115706000_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
ENSMUSG00000020782.19_115714884_115736466_1	chr11	+	789	6	ISM	ENSMUSG00000020782.19	ENSMUST00000177736.8	3612	26	0	10138	0	164	5prime_fragment	FALSE	canonical	3	674	junction_1	80.564508314766	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAGTTGCGTCTCAGTCA	6809	False	NA	NA	False	AGTAAA	-15	NA	115714883	115736466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199
ENSMUSG00000020782.19_115745637_115746604_1	chr11	+	467	4	ISM	ENSMUSG00000020782.19	ENSMUST00000177736.8	3612	26	30753	0	-221	0	3prime_fragment	FALSE	canonical	3	765	junction_1	89.1827088372828	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACCTGAGGACCCGTGC	NA	False	NA	38	True	AATAAA	-23	NA	115745636	115746604	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_115745686_115745888_115745932_115746017_115746080_115746291
ENSMUSG00000020788.16_72879833_72883869_1	chr11	+	1509	3	ISM	ENSMUSG00000020788.16	ENSMUST00000021142.8	4593	22	27838	0	6910	0	3prime_fragment	FALSE	canonical	3	82	junction_2	6.5	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTAGTCTTTTCTGAG	NA	False	NA	22	True	AATAAA	-22	NA	72879832	72883869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_72879914_72880300_72880374_72882514
ENSMUSG00000020792.16_116179714_116197553_1	chr11	-	2311	18	FSM	ENSMUSG00000020792.16	ENSMUST00000106411.10	3205	18	7	887	0	175	multi-exon	FALSE	canonical	3	153	junction_14	26.4175940114993	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGTCTGCTTTCATCCC	8927	False	NA	1	True	NA	NA	NA	116197553	116179713	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
ENSMUSG00000020792.16_116179935_116197553_1	chr11	-	2090	18	FSM	ENSMUSG00000020792.16	ENSMUST00000106411.10	3205	18	7	1108	0	0	multi-exon	FALSE	canonical	3	153	junction_14	26.4175940114993	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGAGCCGGGTGAGTGT	8927	False	NA	-6	True	CATAAA	-15	NA	116197553	116179934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
ENSMUSG00000020794.14_72498109_72575129_1	chr11	+	1637	6	FSM	ENSMUSG00000020794.14	ENSMUST00000021148.13	3815	6	0	2178	0	-2178	multi-exon	FALSE	canonical	3	783	junction_5	11.0453610171873	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCATCTTAGTGAAATTTA	NA	False	NA	7	True	AATAAA	-19	NA	72498108	72575129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_72498462_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
ENSMUSG00000020794.14_72498109_72575438_1	chr11	+	1941	6	NNC	ENSMUSG00000020794.14	novel	3815	6	NA	NA	0	-1869	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	310.570700485413	812	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCAAGTTGTTGGCTTTT	NA	False	NA	NA	False	AATATA	-16	NA	72498108	72575438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_72498462_72553896_72554000_72563790_72563884_72568530_72568710_72570194_72570319_72574349
ENSMUSG00000020794.14_72498109_72575438_2	chr11	+	1946	6	FSM	ENSMUSG00000020794.14	ENSMUST00000021148.13	3815	6	0	1869	0	-1869	multi-exon	FALSE	canonical	3	783	junction_5	11.0453610171873	905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCAAGTTGTTGGCTTTT	NA	False	NA	NA	False	AATATA	-16	NA	72498108	72575438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_72498462_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
ENSMUSG00000020794.14_72498145_72575438_1	chr11	+	1910	6	FSM	ENSMUSG00000020794.14	ENSMUST00000021148.13	3815	6	36	1869	0	-1869	multi-exon	FALSE	canonical	3	783	junction_5	11.0453610171873	588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCAAGTTGTTGGCTTTT	NA	False	NA	NA	False	AATATA	-16	NA	72498144	72575438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_72498462_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
ENSMUSG00000020799.17_72235548_72247620_1	chr11	-	845	5	NNC	ENSMUSG00000020799.17	novel	1403	8	NA	NA	4502	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	17.8518206354422	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72247620	72235547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_72235798_72236411_72236609_72242653_72242877_72246035_72246165_72247574
ENSMUSG00000020799.17_72235548_72247620_2	chr11	-	989	6	NNC	ENSMUSG00000020799.17	novel	1403	8	NA	NA	4502	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_5	10.6320270880016	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72247620	72235547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72247574
ENSMUSG00000020799.17_72235548_72248487_1	chr11	-	1120	6	ISM	ENSMUSG00000020799.17	ENSMUST00000108502.8	1403	8	3635	0	3635	0	3prime_fragment	FALSE	canonical	3	33	junction_5	9.09065454189081	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72248487	72235547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72248310
ENSMUSG00000020801.9_72102550_72105879_1	chr11	-	622	4	FSM	ENSMUSG00000020801.9	ENSMUST00000021157.9	1161	4	539	0	0	0	multi-exon	FALSE	canonical	3	203	junction_2	14.0079342596338	3443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGATTGCTCCACTTTGA	NA	False	NA	-5	True	AATAAA	-15	NA	72105879	72102549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_72102904_72104602_72104700_72104963_72105042_72105786
ENSMUSG00000020803.4_72098373_72100613_1	chr11	+	677	3	NIC	ENSMUSG00000020803.4	novel	981	4	NA	NA	0	-228	combination_of_known_splicesites	FALSE	canonical	3	23	junction_2	739	2201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTAAGTTTTTTAACACG	NA	False	NA	16	True	AATAAA	-16	NA	72098372	72100613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_72098595_72099078_72099161_72100240
ENSMUSG00000020803.4_72098441_72100498_1	chr11	+	570	4	FSM	ENSMUSG00000020803.4	ENSMUST00000021158.4	981	4	68	343	0	-343	multi-exon	FALSE	canonical	3	1302	junction_3	85.4959388249264	851	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTATTGATTGCCTGGT	NA	False	NA	-99	True	AAAAAG	-15	NA	72098440	72100498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_72098595_72099078_72099161_72099555_72099632_72100240
ENSMUSG00000020803.4_72098441_72100613_1	chr11	+	685	4	FSM	ENSMUSG00000020803.4	ENSMUST00000021158.4	981	4	68	228	0	-228	multi-exon	FALSE	canonical	3	1302	junction_3	85.4959388249264	18543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTAAGTTTTTTAACACG	NA	False	NA	16	True	AATAAA	-16	NA	72098440	72100613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_72098595_72099078_72099161_72099555_72099632_72100240
ENSMUSG00000020805.15_72150656_72157430_1	chr11	-	960	4	ISM	ENSMUSG00000020805.15	ENSMUST00000137701.3	1746	11	9	16442	-2	261	5prime_fragment	FALSE	canonical	3	49	junction_1	1.4142135623731	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGCTAGACTTATTTTC	NA	False	NA	NA	False	ATTAAA	-21	NA	72157430	72150655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_72151209_72152438_72152576_72152848_72152978_72157289
ENSMUSG00000020808.4_71933281_71938196_1	chr11	+	1235	5	NIC	ENSMUSG00000020808.4	novel	1513	6	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	37	junction_2	82.8930033235616	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCATGTTTTTAGATATCT	NA	False	NA	14	True	AATAAA	-18	NA	71933280	71938196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_71933361_71933842_71934164_71936504_71936601_71937165_71937220_71937512
ENSMUSG00000020808.4_71933328_71938196_1	chr11	+	1062	6	NNC	ENSMUSG00000020808.4	novel	1513	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	106.202448182704	249	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCATGTTTTTAGATATCT	NA	False	NA	14	True	AATAAA	-18	NA	71933327	71938196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_71933361_71933842_71934164_71935806_71936085_71936504_71936601_71937165_71937220_71937916
ENSMUSG00000020817.17_70833903_70860785_1	chr11	+	2419	17	NIC	ENSMUSG00000020817.17	novel	5408	18	NA	NA	98102	26854	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	713	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCTCAGGATTGAGGGG	NA	False	NA	NA	False	NA	NA	NA	70833902	70860785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
ENSMUSG00000020817.17_70833903_70860785_2	chr11	+	2434	17	NIC	ENSMUSG00000020817.17	novel	5408	18	NA	NA	98102	26854	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	690	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCTCAGGATTGAGGGG	NA	False	NA	NA	False	NA	NA	NA	70833902	70860785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
ENSMUSG00000020829.10_78356523_78362771_1	chr11	+	1125	4	FSM	ENSMUSG00000020829.10	ENSMUST00000146431.3	749	4	-53	-323	0	0	multi-exon	FALSE	canonical	3	25	junction_1	30.8796948747159	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGCTTTGGGGCTTTCTG	8337	False	NA	26	True	AGTAAA	-27	NA	78356522	78362771	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78356832_78359450_78359535_78361520_78361678_78362196
ENSMUSG00000020831.19_70126032_70128630_1	chr11	-	567	4	FSM	ENSMUSG00000020831.19	ENSMUST00000108579.8	667	4	100	0	0	0	multi-exon	FALSE	canonical	3	142	junction_2	177.768263634304	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128630	70126031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70126295_70126849_70127038_70128356_70128452_70128609
ENSMUSG00000020831.19_70126032_70128630_2	chr11	-	658	5	NIC	ENSMUSG00000020831.19	novel	779	5	NA	NA	0	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_2	211.660695453832	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128630	70126031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_70126295_70126849_70127038_70127713_70127805_70128356_70128452_70128609
ENSMUSG00000020831.19_70126032_70128694_1	chr11	-	760	5	NIC	ENSMUSG00000020831.19	novel	779	5	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	53	junction_1	190.587742260619	2127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128694	70126031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_70126295_70126822_70127038_70127702_70127805_70128356_70128452_70128609
ENSMUSG00000020832.15_77964373_77971209_1	chr11	-	1843	10	FSM	ENSMUSG00000020832.15	ENSMUST00000021183.4	2014	10	0	171	0	-171	multi-exon	FALSE	canonical	3	178	junction_8	16.2890556304942	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTATTATTATTATTATT	NA	False	NA	NA	False	NA	NA	NA	77971209	77964372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_77965001_77965105_77965187_77965303_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
ENSMUSG00000020840.11_76836565_76877673_1	chr11	+	1730	12	FSM	ENSMUSG00000020840.11	ENSMUST00000021197.10	2497	12	235	532	0	18	multi-exon	FALSE	canonical	3	631	junction_4	56.5853410915431	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTTGCTCTCCTCATCTC	NA	False	NA	3	True	AATAAA	-18	NA	76836564	76877673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
ENSMUSG00000020840.11_76836565_76878205_1	chr11	+	2262	12	FSM	ENSMUSG00000020840.11	ENSMUST00000021197.10	2497	12	235	0	0	0	multi-exon	FALSE	canonical	3	631	junction_4	56.5853410915431	3235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCCGGCGTGTCTGGTC	NA	False	NA	30	True	AATAAA	-19	NA	76836564	76878205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
ENSMUSG00000020840.11_76836565_76878205_2	chr11	+	2081	12	NNC	ENSMUSG00000020840.11	novel	2497	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_2	205.538036133268	1719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCCGGCGTGTCTGGTC	NA	False	NA	30	True	AATAAA	-19	NA	76836564	76878205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_76836720_76837067_76837085_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
ENSMUSG00000020843.16_76298017_76305207_1	chr11	+	858	4	FSM	ENSMUSG00000020843.16	ENSMUST00000021203.7	2817	4	48	1911	0	52	multi-exon	FALSE	canonical	3	248	junction_1	9.62635271879577	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGGACTGTTACGCAT	NA	False	NA	3	True	AGTAAA	-15	NA	76298016	76305207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_76298269_76300467_76300665_76301952_76302026_76304871
ENSMUSG00000020843.16_76298017_76305207_2	chr11	+	661	3	FSM	ENSMUSG00000020843.16	ENSMUST00000152183.2	362	3	0	-299	0	52	multi-exon	FALSE	canonical	3	21	junction_1	125	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGGACTGTTACGCAT	NA	False	NA	3	True	AGTAAA	-15	NA	76298016	76305207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_76298269_76301952_76302026_76304871
ENSMUSG00000020843.16_76298017_76305398_1	chr11	+	1049	4	FSM	ENSMUSG00000020843.16	ENSMUST00000021203.7	2817	4	48	1720	0	243	multi-exon	FALSE	canonical	3	248	junction_1	9.62635271879577	3135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGTTAGTATCTTTGCT	NA	False	NA	17	True	AGTAAA	-27	NA	76298016	76305398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_76298269_76300467_76300665_76301952_76302026_76304871
ENSMUSG00000020843.16_76298017_76305398_2	chr11	+	852	3	FSM	ENSMUSG00000020843.16	ENSMUST00000152183.2	362	3	0	-490	0	243	multi-exon	FALSE	canonical	3	21	junction_1	125	953	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGTTAGTATCTTTGCT	NA	False	NA	17	True	AGTAAA	-27	NA	76298016	76305398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_76298269_76301952_76302026_76304871
ENSMUSG00000020843.16_76298017_76305552_1	chr11	+	1203	4	FSM	ENSMUSG00000020843.16	ENSMUST00000021203.7	2817	4	48	1566	0	397	multi-exon	FALSE	canonical	3	248	junction_1	9.62635271879577	5192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGCTCAGTAGTTAATAC	NA	False	NA	NA	False	NA	NA	NA	76298016	76305552	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_76298269_76300467_76300665_76301952_76302026_76304871
ENSMUSG00000020849.14_75623739_75656404_1	chr11	+	1784	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	0	-267	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4203.75149598546	9147	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3035	False	NA	16	True	NA	NA	NA	75623738	75656404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647647_75647850_75650117_75650255_75655445
ENSMUSG00000020849.14_75623739_75656404_2	chr11	+	1554	5	FSM	ENSMUSG00000020849.14	ENSMUST00000134745.8	599	5	0	-955	0	-267	multi-exon	FALSE	canonical	0	0	junction_3	4641.68485035337	1754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3035	False	NA	16	True	NA	NA	NA	75623738	75656404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646479_75650117_75650255_75655445
ENSMUSG00000020849.14_75623787_75656455_1	chr11	+	1792	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	92	216	0	-216	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	9017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTTGACAGTATTGTTT	3083	False	NA	14	True	AATAAA	-15	NA	75623786	75656455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
ENSMUSG00000020857.12_93840643_93846702_1	chr11	-	621	5	NNC	ENSMUSG00000020857.12	novel	1012	5	NA	NA	-93	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2819.82964911003	46785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGCAGTGTTCAGTAC	NA	False	NA	-31	True	NA	NA	NA	93846702	93840642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_93840873_93842725_93842830_93843621_93843728_93846320_93846451_93846651
ENSMUSG00000020857.12_93840643_93846702_2	chr11	-	626	5	FSM	ENSMUSG00000020857.12	ENSMUST00000021217.11	1012	5	383	3	-93	0	multi-exon	FALSE	canonical	3	5665	junction_4	866.911327645452	61217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGCAGTGTTCAGTAC	NA	False	NA	-31	True	NA	NA	NA	93846702	93840642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93846651
ENSMUSG00000020863.16_94181965_94212784_1	chr11	-	1937	11	NNC	ENSMUSG00000020863.16	novel	2050	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	78.8542960148653	1659	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGATTGTCTGTGTCAT	NA	False	NA	-5	True	AATAAA	-23	NA	94212784	94181964	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_94182405_94183910_94184100_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ENSMUSG00000020863.16_94187882_94212784_1	chr11	-	1121	9	NNC	ENSMUSG00000020863.16	novel	5244	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	103.580810843515	204	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAGACGAAGAGAA	NA	False	NA	6	True	NA	NA	NA	94212784	94187881	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_94187994_94188584_94188747_94189775_94189922_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ENSMUSG00000020865.17_94234124_94242433_1	chr11	-	1006	4	NNC	ENSMUSG00000020865.17	novel	4999	31	NA	NA	-421	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	32.8937684067971	148	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGGGTCACATGTTAC	514	False	NA	-7	True	AATAAA	-14	NA	94242433	94234123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_94234602_94236772_94236968_94241761_94241929_94242267
ENSMUSG00000020865.17_94234124_94242914_1	chr11	-	1130	4	ISM	ENSMUSG00000020865.17	ENSMUST00000021231.8	4999	31	40888	0	-902	0	intron_retention	FALSE	canonical	3	69	junction_3	10.6249183003395	328	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGGGTCACATGTTAC	3	True	NA	-7	True	AATAAA	-14	NA	94242914	94234123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_94234602_94236772_94236968_94241761_94241929_94242624
ENSMUSG00000020865.17_94234124_94242975_1	chr11	-	1069	5	ISM	ENSMUSG00000020865.17	ENSMUST00000021231.8	4999	31	40827	0	-963	0	3prime_fragment	FALSE	canonical	3	20	junction_4	28.5164426252645	263	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGGGTCACATGTTAC	NA	False	NA	-7	True	AATAAA	-14	NA	94242975	94234123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_94234602_94236772_94236968_94241761_94241929_94242624_94242784_94242905
ENSMUSG00000020869.9_94520593_94534700_1	chr11	+	1495	7	FSM	ENSMUSG00000020869.9	ENSMUST00000021239.7	2837	7	0	1342	0	-1342	multi-exon	FALSE	canonical	3	2480	junction_6	120.266371026983	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATACTTTTGTATGTCAT	NA	False	NA	-12	True	ACTAAA	-19	NA	94520592	94534700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_94520936_94522906_94522967_94525370_94525530_94525737_94525843_94529356_94529430_94532045_94532220_94534119
ENSMUSG00000020869.9_94532044_94534700_1	chr11	+	757	2	ISM	ENSMUSG00000020869.9	ENSMUST00000021239.7	2837	7	11451	1342	11404	-1342	3prime_fragment	FALSE	canonical	3	2480	junction_1	0	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATACTTTTGTATGTCAT	NA	False	NA	-12	True	ACTAAA	-19	NA	94532043	94534700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_94532220_94534119
ENSMUSG00000020869.9_94535822_94544569_1	chr11	+	2223	9	NIC	ENSMUSG00000020869.9	novel	2837	7	NA	NA	15182	8527	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTATCCCGGTAGCGGA	NA	False	NA	NA	False	NA	NA	NA	94535821	94544569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_94536432_94536641_94536832_94538116_94538233_94538453_94538575_94538769_94538889_94538968_94539056_94540833_94540965_94541048_94541850_94544521
ENSMUSG00000020873.16_95275732_95282485_2	chr11	+	1192	9	FSM	ENSMUSG00000020873.16	ENSMUST00000021243.16	1523	9	214	117	0	-117	multi-exon	FALSE	canonical	3	233	junction_2	19.5923294939627	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATCAAAGGAAG	NA	False	NA	-96	True	NA	NA	NA	95275731	95282485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95275940_95276626_95276731_95277311_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
ENSMUSG00000020873.16_95275732_95282602_1	chr11	+	1309	9	FSM	ENSMUSG00000020873.16	ENSMUST00000021243.16	1523	9	214	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	19.5923294939627	1688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGACCCTGCTGCTGC	NA	False	NA	21	True	AATAAA	-22	NA	95275731	95282602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95275940_95276626_95276731_95277311_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
ENSMUSG00000020873.16_95275732_95282602_2	chr11	+	1303	9	NNC	ENSMUSG00000020873.16	novel	1523	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	92.2994447437253	1630	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGACCCTGCTGCTGC	NA	False	NA	21	True	AATAAA	-22	NA	95275731	95282602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_95275940_95276632_95276731_95277311_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
ENSMUSG00000020882.18_97895751_97903811_1	chr11	-	1276	9	NIC	ENSMUSG00000020882.18	novel	1880	13	NA	NA	-434	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_6	25.6855990780826	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTCTGGTGTCTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	97903811	97895750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97902691_97902769_97903010_97903148_97903637
ENSMUSG00000020888.17_69891647_69900937_1	chr11	+	2742	15	FSM	ENSMUSG00000020888.17	ENSMUST00000019362.15	2968	15	226	0	0	0	multi-exon	FALSE	canonical	3	488	junction_4	30.5160546571265	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCAAGCCTCTGGCTCC	7361	False	NA	12	True	AATAAA	-16	NA	69891646	69900937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339_69897417_69898278_69898347_69898640_69898770_69898845_69898978_69899106_69899287_69899602_69899822_69899969
ENSMUSG00000020888.17_69901015_69906225_1	chr11	+	2087	19	NIC	ENSMUSG00000020888.17	novel	5037	16	NA	NA	3209	3098	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCCCTGACTCATGCTCCA	5983	False	NA	NA	False	NA	NA	NA	69901014	69906225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783_69903910_69903997_69904128_69904259_69904405_69905070_69905206_69905304_69905370_69905456_69905530_69905942_69906022_69906088
ENSMUSG00000020888.17_69901015_69906225_2	chr11	+	2153	20	NIC	ENSMUSG00000020888.17	novel	5037	16	NA	NA	3209	3098	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCCCTGACTCATGCTCCA	5983	False	NA	NA	False	NA	NA	NA	69901014	69906225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783_69903910_69903997_69904128_69904259_69904405_69905070_69905206_69905304_69905370_69905456_69905530_69905618_69905685_69905942_69906022_69906088
ENSMUSG00000020889.12_98644412_98659832_1	chr11	-	1960	9	NIC	ENSMUSG00000020889.12	novel	2721	8	NA	NA	1420	14346	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTTCAATTCCATCCAGG	NA	False	NA	NA	False	NA	NA	NA	98659832	98644411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_98644465_98646933_98647002_98647748_98647850_98651701_98651850_98652546_98652753_98653746_98653894_98654354_98654614_98655103_98655232_98658982
ENSMUSG00000020892.11_69024968_69039941_1	chr11	+	1433	7	ISM	ENSMUSG00000020892.11	ENSMUST00000021268.9	3019	15	8246	0	0	0	3prime_fragment	FALSE	canonical	2	6	junction_1	2.58198889747161	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTTGTTTTGATGATG	4061	False	NA	21	True	AATAAA	-22	NA	69024967	69039941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_69025194_69025282_69025370_69025831_69026002_69026697_69026820_69033011_69033113_69033672_69033844_69039385
ENSMUSG00000020895.15_68961637_68963856_1	chr11	+	1000	4	FSM	ENSMUSG00000020895.15	ENSMUST00000094081.5	1263	4	0	263	0	0	multi-exon	FALSE	canonical	3	354	junction_2	22.0655588845805	1478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGGCGTATACTATTTTT	4652	False	NA	NA	False	AATAAA	-19	NA	68961636	68963856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248
ENSMUSG00000020895.15_68961762_68963856_1	chr11	+	649	5	FSM	ENSMUSG00000020895.15	ENSMUST00000075980.12	779	5	130	0	0	0	multi-exon	FALSE	canonical	3	348	junction_4	23.6893963620857	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGGCGTATACTATTTTT	4777	False	NA	NA	False	AATAAA	-19	NA	68961761	68963856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248_68963346_68963571
ENSMUSG00000020897.13_68936473_68942490_1	chr11	+	1757	9	NNC	ENSMUSG00000020897.13	novel	1831	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	91	junction_1	184.266790279746	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	16	True	AATAAA	-26	NA	68936472	68942490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_68936497_68936694_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
ENSMUSG00000020898.19_68926442_68927296_1	chr11	+	625	3	ISM	ENSMUSG00000020898.19	ENSMUST00000161271.2	516	4	737	-290	737	0	3prime_fragment	FALSE	canonical	3	458	junction_2	2.5	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTGTTCATCTCTGA	NA	False	NA	18	True	AATAAA	-18	NA	68926441	68927296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_68926497_68926592_68926720_68926853
ENSMUSG00000020903.14_67857316_68094705_1	chr11	+	828	8	FSM	ENSMUSG00000020903.14	ENSMUST00000021285.14	4394	8	297	3269	0	109	multi-exon	FALSE	canonical	3	260	junction_1	20.1626043021455	2246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTGGTGTACCTTGTTT	NA	False	NA	17	True	AATAAA	-17	NA	67857315	68094705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_67857344_67860597_67860698_67864058_67864154_67875388_67875500_67902140_67902266_67911731_67911825_68000102_68000205_68094531
ENSMUSG00000020910.17_66928731_66943435_1	chr11	-	1458	5	FSM	ENSMUSG00000020910.17	ENSMUST00000116363.2	1283	5	-39	-136	-15	0	multi-exon	FALSE	canonical	3	79	junction_4	11.1579568022107	895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCATGTGGGCATATAC	NA	False	NA	NA	False	AATAAA	-10	NA	66943435	66928730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_66929272_66931044_66931162_66932306_66932934_66942506_66942605_66943360
ENSMUSG00000020910.17_66928731_66943435_2	chr11	-	1360	4	NIC	ENSMUSG00000020910.17	novel	1531	5	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_3	43.2229362980145	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCATGTGGGCATATAC	NA	False	NA	NA	False	AATAAA	-10	NA	66943435	66928730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_66929272_66931044_66931162_66932306_66932934_66943360
ENSMUSG00000020910.17_66928867_66943435_2	chr11	-	2467	4	NIC	ENSMUSG00000020910.17	novel	1283	5	NA	NA	-15	0	intron_retention	FALSE	canonical	3	79	junction_3	12.2474487139159	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCTGTTTGTGTACAAA	NA	False	NA	2	True	CATAAA	-28	NA	66943435	66928866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_66929272_66931044_66932934_66942506_66942605_66943360
ENSMUSG00000020910.17_66928867_66943435_3	chr11	-	1224	4	NIC	ENSMUSG00000020910.17	novel	1283	5	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_3	43.2229362980145	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCTGTTTGTGTACAAA	NA	False	NA	2	True	CATAAA	-28	NA	66943435	66928866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_66929272_66931044_66931162_66932306_66932934_66943360
ENSMUSG00000020911.15_100031636_100036632_1	chr11	-	1262	6	FSM	ENSMUSG00000020911.15	ENSMUST00000007317.8	1576	6	314	0	314	0	multi-exon	FALSE	canonical	2	8	junction_5	2.56124969497314	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATACCTTGCTTATTTCAG	9913	False	NA	NA	False	AATAAA	-21	NA	100036632	100031635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100031994_100032105_100032232_100032348_100032511_100032877_100033035_100033251_100033335_100036256
ENSMUSG00000020911.15_100031636_100036754_1	chr11	-	1384	6	FSM	ENSMUSG00000020911.15	ENSMUST00000007317.8	1576	6	192	0	192	0	multi-exon	FALSE	canonical	2	8	junction_5	2.56124969497314	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATACCTTGCTTATTTCAG	9791	False	NA	NA	False	AATAAA	-21	NA	100036754	100031635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100031994_100032105_100032232_100032348_100032511_100032877_100033035_100033251_100033335_100036256
ENSMUSG00000020912.5_99306492_99309244_1	chr11	-	880	4	ISM	ENSMUSG00000020912.5	ENSMUST00000017741.4	1852	8	3841	0	3841	0	3prime_fragment	FALSE	canonical	1	1	junction_3	2.62466929133727	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGTGCCTCTCCTTGA	9353	False	NA	NA	False	ATTAAA	-20	NA	99309244	99306491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_99306935_99307720_99307792_99308740_99308962_99309099
ENSMUSG00000020914.18_98883769_98887691_1	chr11	-	1192	7	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	-1141	0	combination_of_known_junctions	FALSE	canonical	3	459	junction_1	548.684487357413	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATTCCTCTTATTTTAAC	NA	False	NA	0	True	AATAAA	-22	NA	98887691	98883768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_98884152_98884589_98884762_98885032_98885233_98886069_98886202_98886506_98886551_98886675_98886800_98887554
ENSMUSG00000020914.18_98883769_98891854_1	chr11	-	1709	11	ISM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	23161	0	232	0	3prime_fragment	FALSE	canonical	3	1094	junction_4	253.173873059603	964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATTCCTCTTATTTTAAC	NA	False	NA	0	True	AATAAA	-22	NA	98891854	98883768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_98884240_98884589_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799
ENSMUSG00000020914.18_98909395_98915016_1	chr11	-	826	5	ISM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	-1	25626	-1	-1976	5prime_fragment	FALSE	canonical	3	1379	junction_1	89.0182565544844	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAATCCTTTAACTCACTA	NA	False	NA	NA	False	NA	NA	NA	98915016	98909394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
ENSMUSG00000020914.18_98909395_98915016_2	chr11	-	1391	4	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	-1	-1976	intron_retention	FALSE	canonical	3	1379	junction_1	98.0034013015195	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAATCCTTTAACTCACTA	NA	False	NA	NA	False	NA	NA	NA	98915016	98909394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_98909768_98912536_98913257_98913665_98913819_98914871
ENSMUSG00000020917.18_100367182_100385025_1	chr11	-	2438	12	ISM	ENSMUSG00000020917.18	ENSMUST00000165111.8	4162	27	29399	-2	0	0	3prime_fragment	FALSE	canonical	3	3497	junction_4	188.959482298225	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	1749	False	NA	-17	True	AATAAA	-15	NA	100385025	100367181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709
ENSMUSG00000020921.7_102043372_102047233_1	chr11	-	1641	4	NIC	ENSMUSG00000020921.7	novel	1574	4	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	131.230924539742	1247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTTTGCTTCTGTCT	4462	False	NA	0	True	AATAAA	-16	NA	102047233	102043371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_102044421_102045382_102045530_102046549_102046731_102046969
ENSMUSG00000020922.12_102054298_102076100_1	chr11	-	1259	5	FSM	ENSMUSG00000020922.12	ENSMUST00000021297.6	2256	5	22	975	-13	480	multi-exon	FALSE	canonical	3	919	junction_1	21.856063231973	1445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGCTTCTTGCAGGTC	6378	False	NA	NA	False	ATTAAA	-15	NA	102076100	102054297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
ENSMUSG00000020922.12_102054778_102076055_1	chr11	-	734	5	FSM	ENSMUSG00000020922.12	ENSMUST00000021297.6	2256	5	67	1455	0	0	multi-exon	FALSE	canonical	3	919	junction_1	21.856063231973	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTTTCAAAAAAAAAAACCTA	6423	False	NA	-112	True	NA	NA	NA	102076055	102054777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
ENSMUSG00000020925.17_102575512_102588560_1	chr11	-	2315	5	NNC	ENSMUSG00000020925.17	novel	2366	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	239.593405585379	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTTCTGTCTTGTTCTTT	NA	False	NA	-4	True	AATAAA	-16	NA	102588560	102575511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_102577323_102579626_102579681_102581024_102581163_102582936_102583025_102588336
ENSMUSG00000020935.9_102884873_102907994_1	chr11	-	1738	5	NNC	ENSMUSG00000020935.9	novel	1744	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	487.729625407356	2273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAATTCCACTTGGCCT	8193	False	NA	-5	True	NA	NA	NA	102907994	102884872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975_102891173_102907871
ENSMUSG00000020935.9_102885495_102907994_1	chr11	-	1122	5	FSM	ENSMUSG00000020935.9	ENSMUST00000021313.9	1744	5	0	622	0	-620	multi-exon	FALSE	canonical	3	1121	junction_2	32.0965340808007	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCATTCCTAACTACCACT	8193	False	NA	NA	False	NA	NA	NA	102907994	102885494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102907875
ENSMUSG00000020936.9_102884873_102919089_1	chr11	+	1902	6	NIC	ENSMUSG00000020936.9	novel	449	3	NA	NA	-34143	-14935	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTCAACATGGAACTGCAA	3601	False	NA	NA	False	NA	NA	NA	102884872	102919089	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102918085_102918248_102918974
ENSMUSG00000020936.9_102919172_102956931_1	chr11	+	1963	13	NNC	ENSMUSG00000020936.9	novel	4861	12	NA	NA	0	-2807	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	375.712988862509	2471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAATATTCTAAATATCT	NA	False	NA	14	True	AATAAA	-20	NA	102919171	102956931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_102919256_102919350_102919529_102933993_102934103_102937204_102937350_102943031_102943151_102946023_102946116_102947208_102947326_102948190_102948362_102949030_102949144_102950903_102951075_102954633_102954802_102955555_102955694_102956573
ENSMUSG00000020936.9_102919411_102956931_1	chr11	+	1809	12	NNC	ENSMUSG00000020936.9	novel	4861	12	NA	NA	0	-2807	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	292.181082761987	2305	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAATATTCTAAATATCT	NA	False	NA	14	True	AATAAA	-20	NA	102919410	102956931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_102919529_102933993_102934103_102937204_102937350_102943031_102943151_102946023_102946116_102947208_102947326_102948190_102948362_102949030_102949140_102950903_102951069_102954633_102954802_102955555_102955694_102956573
ENSMUSG00000020936.9_102919411_102956931_2	chr11	+	1815	12	FSM	ENSMUSG00000020936.9	ENSMUST00000021314.8	4861	12	239	2807	0	-2807	multi-exon	FALSE	canonical	3	928	junction_6	43.300411312535	2314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAATATTCTAAATATCT	NA	False	NA	14	True	AATAAA	-20	NA	102919410	102956931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_102919529_102933993_102934103_102937204_102937350_102943031_102943151_102946023_102946116_102947208_102947326_102948190_102948362_102949030_102949140_102950903_102951075_102954633_102954802_102955555_102955694_102956573
ENSMUSG00000020940.14_103089773_103090315_1	chr11	-	344	2	ISM	ENSMUSG00000020940.14	ENSMUST00000021323.11	1199	10	9059	3	9033	0	3prime_fragment	FALSE	canonical	3	22	junction_1	0	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTGGCTGCGCCTAGTG	NA	False	NA	NA	False	AGTAAA	-14	NA	103090315	103089772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_103089945_103090143
ENSMUSG00000020946.14_103567675_103588524_1	chr11	-	2925	5	FSM	ENSMUSG00000020946.14	ENSMUST00000107013.3	1044	5	-4	-1877	0	0	multi-exon	TRUE	canonical	3	79	junction_1	134.545531326759	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTGGCATTCTTTGTCT	NA	False	NA	2	True	AATAAA	-31	NA	103588524	103567674	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_103570224_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ENSMUSG00000020946.14_103567675_103588524_2	chr11	-	3066	6	FSM	ENSMUSG00000020946.14	ENSMUST00000021329.14	3266	6	200	0	0	0	multi-exon	FALSE	canonical	3	264	junction_1	54.6867442804927	1352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTGGCATTCTTTGTCT	NA	False	NA	2	True	AATAAA	-31	NA	103588524	103567674	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ENSMUSG00000020946.14_103569920_103588524_1	chr11	-	821	6	FSM	ENSMUSG00000020946.14	ENSMUST00000021329.14	3266	6	200	2245	0	-161	multi-exon	FALSE	canonical	3	264	junction_1	54.6867442804927	910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTTTGTTTTCTGTGAC	NA	False	NA	-2	True	NA	NA	NA	103588524	103569919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ENSMUSG00000020946.14_103569920_103588524_2	chr11	-	680	5	FSM	ENSMUSG00000020946.14	ENSMUST00000107013.3	1044	5	-4	368	0	-161	multi-exon	FALSE	canonical	3	79	junction_1	134.545531326759	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTTTGTTTTCTGTGAC	NA	False	NA	-2	True	NA	NA	NA	103588524	103569919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_103570224_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ENSMUSG00000020946.14_103569920_103588724_1	chr11	-	1021	6	FSM	ENSMUSG00000020946.14	ENSMUST00000021329.14	3266	6	0	2245	0	-161	multi-exon	FALSE	canonical	3	264	junction_1	54.6867442804927	965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTTTGTTTTCTGTGAC	NA	False	NA	-2	True	NA	NA	NA	103588724	103569919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ENSMUSG00000020949.10_65109210_65120721_1	chr12	-	945	7	NNC	ENSMUSG00000020949.10	novel	981	7	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	3855.04114764032	28112	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACTGACTTATTTATTGT	NA	False	NA	-14	True	AATAAA	-17	NA	65120721	65109209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116729_65116827_65120588
ENSMUSG00000020949.10_65113491_65120721_1	chr12	-	408	4	ISM	ENSMUSG00000020949.10	ENSMUST00000221166.2	981	7	15	4293	15	0	5prime_fragment	FALSE	canonical	0	0	junction_2	5059.50395021313	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGGATGTTGTTCACTGC	NA	False	NA	NA	False	GATAAA	-17	NA	65120721	65113490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_65113552_65115775_65115884_65116720_65116827_65120588
ENSMUSG00000020956.15_52045683_52053284_1	chr12	-	1171	3	FSM	ENSMUSG00000020956.15	ENSMUST00000021339.8	2564	3	0	1393	0	-1393	multi-exon	FALSE	canonical	3	170	junction_1	5	1516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGTTTTTCTTAAAGCC	NA	False	NA	3	True	AATAAA	-20	NA	52053284	52045682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_52046657_52051661_52051732_52053157
ENSMUSG00000020956.15_52045683_52053284_2	chr12	-	1381	3	NNC	ENSMUSG00000020956.15	novel	2564	3	NA	NA	0	-1393	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	74	1296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGTTTTTCTTAAAGCC	NA	False	NA	3	True	AATAAA	-20	NA	52053284	52045682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_52046657_52051661_52051732_52052947
ENSMUSG00000020956.15_52045683_52053284_3	chr12	-	1245	4	NNC	ENSMUSG00000020956.15	novel	2564	3	NA	NA	0	-1393	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_2	77.1895214535122	1462	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGTTTTTCTTAAAGCC	NA	False	NA	3	True	AATAAA	-20	NA	52053284	52045682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_52046657_52051079_52051154_52051661_52051732_52053157
ENSMUSG00000020956.15_52045964_52053284_1	chr12	-	890	3	FSM	ENSMUSG00000020956.15	ENSMUST00000021339.8	2564	3	0	1674	0	-1674	multi-exon	FALSE	canonical	3	170	junction_1	5	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATACTTTTCAAAGTGAAGA	NA	False	NA	NA	False	NA	NA	NA	52053284	52045963	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_52046657_52051661_52051732_52053157
ENSMUSG00000020973.8_69235861_69243907_1	chr12	-	2094	3	FSM	ENSMUSG00000020973.8	ENSMUST00000021356.6	3390	3	1296	0	1296	0	multi-exon	FALSE	canonical	3	240	junction_2	19	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTTACCTACATTCTC	NA	False	NA	-8	True	AATAAA	-16	NA	69243907	69235860	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_69237169_69239581_69239726_69243265
ENSMUSG00000020973.8_69236613_69243907_1	chr12	-	1342	3	FSM	ENSMUSG00000020973.8	ENSMUST00000021356.6	3390	3	1296	752	1296	-752	multi-exon	FALSE	canonical	3	240	junction_2	19	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACAGGTTGTTTGTGTTTT	NA	False	NA	-2	True	AGTAAA	-16	NA	69243907	69236612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_69237169_69239581_69239726_69243265
ENSMUSG00000020974.7_69248547_69274958_3	chr12	-	1689	19	NNC	ENSMUSG00000020974.7	novel	1706	19	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	100.520451208255	1108	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTACACATTGTAGTTT	NA	False	NA	-5	True	AATAAA	-20	NA	69274958	69248546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_69248657_69249680_69249749_69250864_69251042_69253183_69253293_69254632_69254711_69254794_69254855_69255690_69255746_69256085_69256176_69256595_69256769_69258146_69258220_69258996_69259046_69259760_69259812_69260602_69260687_69262084_69262160_69268750_69268845_69269172_69269251_69269877_69269954_69273111_69273213_69274870
ENSMUSG00000020974.7_69269722_69274953_1	chr12	-	416	3	ISM	ENSMUSG00000020974.7	ENSMUST00000221411.2	1641	19	0	21175	0	-11845	5prime_fragment	FALSE	canonical	3	441	junction_2	40	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATCATTTTTTTCTAGT	NA	False	NA	NA	False	ATTAAA	-9	NA	69274953	69269721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_69269954_69273111_69273213_69274870
ENSMUSG00000020982.10_69387752_69403923_1	chr12	-	1370	14	NNC	ENSMUSG00000020982.10	novel	1340	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	89.7923969844497	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAAGCAGCTGCAGAAGC	NA	False	NA	NA	False	NA	NA	NA	69403923	69387751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391523_69391676_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
ENSMUSG00000020986.14_59005575_59058803_1	chr12	-	3703	20	FSM	ENSMUSG00000020986.14	ENSMUST00000021375.12	4109	20	0	406	0	-406	multi-exon	FALSE	canonical	3	521	junction_10	53.3728846882441	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTAGTTATTTTAAAATC	2678	False	NA	-9	True	AATAAA	-18	NA	59058803	59005574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
ENSMUSG00000020988.10_69737207_69771647_1	chr12	-	3142	8	NIC	ENSMUSG00000020988.10	novel	3340	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_4	181.049998731887	655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTTATGATCATATT	NA	False	NA	0	True	AATAAA	-34	NA	69771647	69737206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69759395_69759528_69768085_69768238_69768851_69768968_69771427
ENSMUSG00000020994.6_59113729_59118322_1	chr12	+	964	9	FSM	ENSMUSG00000020994.6	ENSMUST00000021381.6	3485	9	59	2462	0	0	multi-exon	FALSE	canonical	3	465	junction_8	34.8308412186671	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAGAAGGCGGAACAAGAA	NA	False	NA	NA	False	AAAAAG	-25	NA	59113728	59118322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
ENSMUSG00000020994.6_59113729_59119844_1	chr12	+	2486	9	FSM	ENSMUSG00000020994.6	ENSMUST00000021381.6	3485	9	59	940	0	-940	multi-exon	FALSE	canonical	3	465	junction_8	34.8308412186671	658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTGTCATCTTTTTTAA	NA	False	NA	2	True	AATAAA	-13	NA	59113728	59119844	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
ENSMUSG00000020994.6_59113729_59120641_1	chr12	+	3283	9	FSM	ENSMUSG00000020994.6	ENSMUST00000021381.6	3485	9	59	143	0	-143	multi-exon	FALSE	canonical	3	465	junction_8	34.8308412186671	992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTGTTTAAAATTAGTAC	NA	False	NA	10	True	AATAAA	-16	NA	59113728	59120641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
ENSMUSG00000021018.9_20536580_20541017_1	chr16	+	780	5	NNC	ENSMUSG00000021018.9	novel	950	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	317.100437558828	8818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTCCATTGTCATTGC	1069	False	NA	15	True	ATTAAA	-16	NA	20536579	20541017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_20536745_20537573_20537658_20537740_20537840_20539278_20539353_20540659
ENSMUSG00000021018.9_20536580_20541017_2	chr16	+	751	6	NNC	ENSMUSG00000021018.9	novel	950	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	317.588664785127	7948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTCCATTGTCATTGC	1069	False	NA	15	True	ATTAAA	-16	NA	20536579	20541017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_20536745_20537573_20537658_20537740_20537835_20539268_20539353_20540659_20540921_20540954
ENSMUSG00000021018.9_20536580_20541017_3	chr16	+	701	4	NIC	ENSMUSG00000021018.9	novel	950	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	360.607820214704	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTCCATTGTCATTGC	1069	False	NA	15	True	ATTAAA	-16	NA	20536579	20541017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_20536745_20537573_20537658_20537740_20537835_20540659
ENSMUSG00000021018.9_20536580_20541017_4	chr16	+	792	5	NNC	ENSMUSG00000021018.9	novel	950	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	331.022185812371	9188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTCCATTGTCATTGC	1069	False	NA	15	True	ATTAAA	-16	NA	20536579	20541017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_20536752_20537573_20537658_20537740_20537835_20539268_20539353_20540659
ENSMUSG00000021022.10_55328296_55349451_1	chr12	-	1483	13	ISM	ENSMUSG00000021022.10	ENSMUST00000021410.10	4216	14	332	2520	-4	-2520	3prime_fragment	FALSE	canonical	3	216	junction_9	34.6025047262959	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACAGCAAATATCTTGC	NA	False	NA	NA	False	AATAAA	-19	NA	55349451	55328295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378
ENSMUSG00000021022.10_55328296_55349451_3	chr12	-	1285	11	NNC	ENSMUSG00000021022.10	novel	4216	14	NA	NA	-4	-2520	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_7	85.4534376137087	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACAGCAAATATCTTGC	NA	False	NA	NA	False	AATAAA	-19	NA	55349451	55328295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55344591_55344676_55345195_55345301_55345678_55345807_55349378
ENSMUSG00000021022.10_55328296_55349783_1	chr12	-	1696	14	FSM	ENSMUSG00000021022.10	ENSMUST00000021410.10	4216	14	0	2520	0	-2520	multi-exon	FALSE	canonical	3	69	junction_13	62.3614203298973	1366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACAGCAAATATCTTGC	NA	False	NA	NA	False	AATAAA	-19	NA	55349783	55328295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378_55349581_55349699
ENSMUSG00000021022.10_55328296_55349783_2	chr12	-	1815	13	ISM	ENSMUSG00000021022.10	ENSMUST00000021410.10	4216	14	0	2520	0	-2520	intron_retention	FALSE	canonical	3	216	junction_9	34.6025047262959	1346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACAGCAAATATCTTGC	NA	False	NA	NA	False	AATAAA	-19	NA	55349783	55328295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378
ENSMUSG00000021022.10_55328296_55349783_3	chr12	-	1678	14	NNC	ENSMUSG00000021022.10	novel	4216	14	NA	NA	0	-2520	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_13	69.7240545793362	1369	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACAGCAAATATCTTGC	NA	False	NA	NA	False	AATAAA	-19	NA	55349783	55328295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378_55349581_55349717
ENSMUSG00000021022.10_55336537_55349451_1	chr12	-	431	5	NNC	ENSMUSG00000021022.10	novel	4216	14	NA	NA	-4	2777	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	126.198999599838	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTGGACGGGCTGGAGA	NA	False	NA	NA	False	NA	NA	NA	55349451	55336536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_55336578_55344591_55344676_55345195_55345301_55345678_55345807_55349378
ENSMUSG00000021023.15_55350046_55429281_1	chr12	+	2498	7	FSM	ENSMUSG00000021023.15	ENSMUST00000021411.15	3122	7	624	0	0	0	multi-exon	FALSE	canonical	3	113	junction_3	136.205726751851	1813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTTAGTTGGTTTTGCA	NA	False	NA	19	True	AATAAA	-20	NA	55350045	55429281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_55351670_55353123_55353172_55355521_55355655_55384944_55385053_55423898_55424048_55426066_55426263_55429041
ENSMUSG00000021023.15_55423930_55429281_1	chr12	+	516	3	NNC	ENSMUSG00000021023.15	novel	3122	7	NA	NA	73859	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	210.5	104	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTTAGTTGGTTTTGCA	NA	False	NA	19	True	AATAAA	-20	NA	55423929	55429281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_55424010_55426066_55426263_55429041
ENSMUSG00000021023.15_55423981_55429281_1	chr12	+	503	3	ISM	ENSMUSG00000021023.15	ENSMUST00000183654.2	943	7	73910	17	73910	0	3prime_fragment	FALSE	canonical	3	389	junction_1	18	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTTAGTTGGTTTTGCA	NA	False	NA	19	True	AATAAA	-20	NA	55423980	55429281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_55424048_55426066_55426263_55429041
ENSMUSG00000021025.9_55536629_55539432_1	chr12	-	1144	6	FSM	ENSMUSG00000021025.9	ENSMUST00000021413.9	1578	6	0	434	0	-434	multi-exon	FALSE	canonical	3	201	junction_5	20.9914268214431	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAGAAAAAAAATGAGA	NA	False	NA	NA	False	AATAGA	-31	NA	55539432	55536628	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_55536755_55537190_55537452_55537555_55537645_55537904_55538116_55538454_55538564_55539084
ENSMUSG00000021028.9_56375088_56392611_1	chr12	-	1752	8	NIC	ENSMUSG00000021028.9	novel	1512	9	NA	NA	-5	0	intron_retention	FALSE	canonical	3	215	junction_1	41.3481978977047	899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATGTCTTTTTTACTGT	NA	False	NA	NA	False	AATAAA	-33	NA	56392611	56375087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_56375585_56377013_56377053_56382582_56382681_56384087_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
ENSMUSG00000021033.12_87204382_87211497_1	chr12	+	1582	9	FSM	ENSMUSG00000021033.12	ENSMUST00000222222.2	724	9	0	-858	0	0	multi-exon	FALSE	canonical	3	69	junction_1	142.509429512576	650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTTTTGTCATGGACAA	3847	False	NA	13	True	NA	NA	NA	87204381	87211497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_87204435_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
ENSMUSG00000021036.11_87356413_87360012_1	chr12	-	923	2	ISM	ENSMUSG00000021036.11	ENSMUST00000170720.2	704	4	15375	0	15375	0	3prime_fragment	FALSE	canonical	3	597	junction_1	0	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTATTCTACTTGTGAA	9013	False	NA	-11	True	ATTAAA	-14	NA	87360012	87356412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_87356795_87359471
ENSMUSG00000021036.11_87356413_87435015_1	chr12	-	2015	12	FSM	ENSMUSG00000021036.11	ENSMUST00000021424.5	6710	12	114	4581	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.0427457550466	1524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTATTCTACTTGTGAA	8810	False	NA	-11	True	ATTAAA	-14	NA	87435015	87356412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_87356795_87359471_87359602_87360824_87360961_87382805_87382933_87388310_87388531_87389417_87389524_87393481_87393576_87397034_87397160_87402299_87402449_87403321_87403477_87415704_87415900_87434819
ENSMUSG00000021036.11_87356413_87435129_1	chr12	-	2129	12	FSM	ENSMUSG00000021036.11	ENSMUST00000021424.5	6710	12	0	4581	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.0427457550466	1542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTATTCTACTTGTGAA	8696	False	NA	-11	True	ATTAAA	-14	NA	87435129	87356412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_87356795_87359471_87359602_87360824_87360961_87382805_87382933_87388310_87388531_87389417_87389524_87393481_87393576_87397034_87397160_87402299_87402449_87403321_87403477_87415704_87415900_87434819
ENSMUSG00000021037.8_87313484_87320754_1	chr12	+	1361	9	NNC	ENSMUSG00000021037.8	novel	1377	9	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	2	244	junction_3	909.82889016287	12273	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTCTTACAATCTATG	NA	False	NA	-1	True	AGTAAA	-17	NA	87313483	87320754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_87313696_87314928_87315120_87316648_87316732_87317115_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
ENSMUSG00000021037.8_87313484_87320754_2	chr12	+	1357	9	NNC	ENSMUSG00000021037.8	novel	1377	9	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1003.75568958537	12056	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTCTTACAATCTATG	NA	False	NA	-1	True	AGTAAA	-17	NA	87313483	87320754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320229_87320273_87320364
ENSMUSG00000021037.8_87313632_87320754_1	chr12	+	1218	9	FSM	ENSMUSG00000021037.8	ENSMUST00000021425.8	1377	9	160	-1	148	1	multi-exon	FALSE	canonical	3	2699	junction_7	143.152890295656	8004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTCTTACAATCTATG	NA	False	NA	-1	True	AGTAAA	-17	NA	87313631	87320754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
ENSMUSG00000021039.10_87489971_87496694_1	chr12	-	408	4	Fusion	ENSMUSG00000079036.11_ENSMUSG00000021039.10	novel	2232	14	NA	NA	4233	310	multi-exon	FALSE	non_canonical	0	0	junction_1	0	536	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGTTAATCCGTTGGGCCT	NA	False	NA	NA	False	GATAAA	-24	NA	87496694	87489970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr12_-_87490091_87494333_87494393_87496062_87496171_87496573
ENSMUSG00000021039.10_87490682_87496694_1	chr12	-	397	4	Fusion	ENSMUSG00000079036.11_ENSMUSG00000021039.10	novel	2232	14	NA	NA	4233	-401	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2103	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACCCTGGAGTCGTGACC	NA	False	NA	NA	False	AATGAA	-3	NA	87496694	87490681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr12_-_87490797_87494333_87494393_87496062_87496165_87496573
ENSMUSG00000021039.10_87490682_87496694_2	chr12	-	390	4	Fusion	ENSMUSG00000079036.11_ENSMUSG00000021039.10	novel	2232	14	NA	NA	4233	-401	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1608	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACCCTGGAGTCGTGACC	NA	False	NA	NA	False	AATGAA	-3	NA	87496694	87490681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr12_-_87490797_87494333_87494393_87496062_87496171_87496586
ENSMUSG00000021039.10_87490682_87496694_4	chr12	-	344	3	Fusion	ENSMUSG00000079036.11_ENSMUSG00000021039.10	novel	2232	14	NA	NA	4233	-401	multi-exon	FALSE	non_canonical	0	0	junction_1	0	455	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACCCTGGAGTCGTGACC	NA	False	NA	NA	False	AATGAA	-3	NA	87496694	87490681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr12_-_87490797_87496062_87496171_87496573
ENSMUSG00000021039.10_87490682_87499116_1	chr12	-	416	5	Fusion	ENSMUSG00000079036.11_ENSMUSG00000021039.10	novel	2232	14	NA	NA	1811	-401	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17600	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACCCTGGAGTCGTGACC	NA	False	NA	NA	False	AATGAA	-3	NA	87499116	87490681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr12_-_87490797_87494333_87494393_87496062_87496171_87496573_87496696_87499104
ENSMUSG00000021039.10_87496680_87519049_1	chr12	-	1859	14	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	274.030728635835	625	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTGTTTATTTAGTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	87519049	87496679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_87497148_87497614_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
ENSMUSG00000021039.10_87497033_87519049_1	chr12	-	1884	14	FSM	ENSMUSG00000021039.10	ENSMUST00000021428.9	2232	14	-5	353	-5	-353	multi-exon	FALSE	canonical	3	814	junction_13	97.7330623652505	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCCAGCACTCCTTTTCA	NA	False	NA	-36	True	ATTAAA	-15	NA	87519049	87497032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
ENSMUSG00000021040.16_87490682_87496694_1	chr12	+	403	4	FSM	ENSMUSG00000021040.16	ENSMUST00000161023.8	2701	4	16	2282	0	0	multi-exon	FALSE	canonical	3	3495	junction_2	126.36015546401	17552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTTTTATTTGAAATGAGG	NA	False	NA	36	True	AATAAA	-23	NA	87490681	87496694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_87490797_87494333_87494393_87496062_87496171_87496573
ENSMUSG00000021040.16_87490682_87496694_2	chr12	+	402	4	NNC	ENSMUSG00000021040.16	novel	2701	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1688.58362738322	13822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTTTTATTTGAAATGAGG	NA	False	NA	36	True	AATAAA	-23	NA	87490681	87496694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_87490801_87494338_87494393_87496062_87496171_87496573
ENSMUSG00000021044.16_88327324_88335961_2	chr12	+	899	2	ISM	ENSMUSG00000021044.16	ENSMUST00000101165.9	2158	11	0	92528	0	-2199	5prime_fragment	FALSE	canonical	3	29	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGTGAATGTTC	NA	False	NA	NA	False	NA	NA	NA	88327323	88335961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_88327366_88335104
ENSMUSG00000021044.16_88327324_88428488_1	chr12	+	2345	11	FSM	ENSMUSG00000021044.16	ENSMUST00000222695.2	2253	11	-94	2	0	0	multi-exon	TRUE	canonical	3	17	junction_1	17.7822945651004	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGACTGTTCCTTCTCA	NA	False	NA	9	True	AATAAA	-22	NA	88327323	88428488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_88327554_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
ENSMUSG00000021048.8_76302187_76366577_1	chr12	+	3126	28	FSM	ENSMUSG00000021048.8	ENSMUST00000021443.7	3241	28	115	0	0	0	multi-exon	FALSE	canonical	3	837	junction_20	135.484134190258	954	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	8026	False	NA	9	True	AATAAA	-17	NA	76302186	76366577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
ENSMUSG00000021048.8_76358683_76366577_1	chr12	+	653	5	ISM	ENSMUSG00000021048.8	ENSMUST00000220046.2	3040	27	56496	-1	4843	0	3prime_fragment	FALSE	canonical	3	1433	junction_2	60.7222158686588	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	NA	False	NA	9	True	AATAAA	-17	NA	76358682	76366577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
ENSMUSG00000021056.9_76245460_76263755_1	chr12	-	774	4	NIC	ENSMUSG00000021056.9	novel	2137	10	NA	NA	12483	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_1	11.0855260988773	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTCTCTCCTGTGCTTG	1129	False	NA	NA	False	AATAAA	-24	NA	76263755	76245459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_76245726_76259148_76259332_76261186_76261493_76263736
ENSMUSG00000021056.9_76250760_76261492_1	chr12	-	1021	4	ISM	ENSMUSG00000021056.9	ENSMUST00000218426.2	1980	9	32028	0	14746	0	3prime_fragment	TRUE	canonical	3	7	junction_2	10.7806410858642	114	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATAGATGGTTTGAACTA	3392	False	NA	NA	False	AATAAA	-20	NA	76261492	76250759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_76251085_76253561_76253769_76259148_76259332_76261186
ENSMUSG00000021072.13_70499869_70514398_1	chr12	+	2379	8	FSM	ENSMUSG00000021072.13	ENSMUST00000021471.13	2795	8	0	416	0	-416	multi-exon	FALSE	canonical	3	450	junction_7	45.1044140108849	852	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGATGTTGAAGAGAAGTTT	NA	False	NA	12	True	AATAAA	-18	NA	70499868	70514398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_70500095_70502785_70502902_70503354_70503401_70505552_70505682_70507118_70507165_70507252_70507355_70511173_70511241_70512751
ENSMUSG00000021076.7_70984689_70995752_1	chr12	+	1909	5	FSM	ENSMUSG00000021076.7	ENSMUST00000222291.2	615	5	-28	-1266	0	1266	multi-exon	FALSE	canonical	3	306	junction_4	20.5836707124847	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTTTGTACTCAATGT	9703	False	NA	NA	False	NA	NA	NA	70984688	70995752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225
ENSMUSG00000021076.7_70984689_71008835_1	chr12	+	1307	13	FSM	ENSMUSG00000021076.7	ENSMUST00000021479.6	4022	13	58	2657	0	0	multi-exon	FALSE	canonical	3	306	junction_4	23.8006769278149	2482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGCCTTGCTTATTTCAA	9703	False	NA	NA	False	AATAAA	-13	NA	70984688	71008835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477_70996546_70999723_70999804_71001392_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640
ENSMUSG00000021076.7_70984689_71008977_1	chr12	+	1449	13	FSM	ENSMUSG00000021076.7	ENSMUST00000021479.6	4022	13	58	2515	0	142	multi-exon	FALSE	canonical	3	306	junction_4	23.8006769278149	3197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTCTTGTGTCGTAT	9703	False	NA	4	True	NA	NA	NA	70984688	71008977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477_70996546_70999723_70999804_71001392_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640
ENSMUSG00000021076.7_70984689_71009828_1	chr12	+	2078	14	NNC	ENSMUSG00000021076.7	novel	4022	13	NA	NA	0	993	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	94.5177106850144	3345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGCTCTTGTGCTTTCT	9703	False	NA	NA	False	AATAAA	-21	NA	70984688	71009828	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477_70996546_70999723_70999804_71001392_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640_71009566_71009787
ENSMUSG00000021078.6_71169947_71183447_1	chr12	+	978	6	NNC	ENSMUSG00000021078.6	novel	578	5	NA	NA	11703	13452	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2493	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGGGCAGTGATGTCAAG	NA	False	NA	NA	False	NA	NA	NA	71169946	71183447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71180673_71180772_71183328
ENSMUSG00000021078.6_71169947_71183447_2	chr12	+	880	5	NIC	ENSMUSG00000021078.6	novel	578	5	NA	NA	11703	13452	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3380	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGGGCAGTGATGTCAAG	NA	False	NA	NA	False	NA	NA	NA	71169946	71183447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71183328
ENSMUSG00000021078.6_71169947_71183447_3	chr12	+	1016	6	NIC	ENSMUSG00000021078.6	novel	578	5	NA	NA	11703	13452	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	372	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGGGCAGTGATGTCAAG	NA	False	NA	NA	False	NA	NA	NA	71169946	71183447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71179280_71179417_71183328
ENSMUSG00000021079.17_71169947_71183447_1	chr12	-	875	5	NNC	ENSMUSG00000021079.17	novel	794	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	120.575702361628	3187	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71183447	71169946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178856_71183328
ENSMUSG00000021079.17_71169947_71183447_2	chr12	-	880	5	NNC	ENSMUSG00000021079.17	novel	794	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	120.575702361628	3230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71183447	71169946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178856_71183323
ENSMUSG00000021096.12_72831013_72834184_1	chr12	+	1037	2	ISM	ENSMUSG00000021096.12	ENSMUST00000222896.2	1103	3	536	6452	536	-1990	5prime_fragment	FALSE	canonical	3	418	junction_1	0	249	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGCAATGCATTTAAG	NA	False	NA	NA	False	NA	NA	NA	72831012	72834184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_72831311_72833445
ENSMUSG00000021096.12_72831013_72841338_1	chr12	+	1436	5	ISM	ENSMUSG00000021096.12	ENSMUST00000021514.10	7668	6	23028	5255	536	0	3prime_fragment	FALSE	canonical	3	299	junction_2	42.9498253779919	302	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATCATGTATGCGTGAT	NA	False	NA	NA	False	AATAAA	-23	NA	72831012	72841338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_72831311_72833445_72833564_72837406_72837516_72839551_72839610_72840485
ENSMUSG00000021098.15_72958433_72964631_1	chr12	-	1929	5	ISM	ENSMUSG00000021098.15	ENSMUST00000131033.8	1939	8	0	5425	0	0	5prime_fragment	FALSE	canonical	3	10	junction_4	10.280442597476	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGGGTATTTTGCCT	NA	False	NA	NA	False	AATAAA	-21	NA	72964631	72958432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_72960049_72962129_72962257_72963447_72963505_72963596_72963654_72964559
ENSMUSG00000021098.15_72958433_72964713_1	chr12	-	1923	5	NNC	ENSMUSG00000021098.15	novel	640	5	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	10.917302780449	153	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGGGTATTTTGCCT	NA	False	NA	NA	False	AATAAA	-21	NA	72964713	72958432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_72960049_72962129_72962257_72963447_72963505_72963596_72963654_72964647
ENSMUSG00000021098.15_72959825_72964631_1	chr12	-	615	5	ISM	ENSMUSG00000021098.15	ENSMUST00000044000.12	2051	18	49	31942	0	136	5prime_fragment	FALSE	canonical	3	18	junction_2	8.16624148553054	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGCCTATTATAAATTCC	NA	False	NA	NA	False	AGTAAA	-24	NA	72964631	72959824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_72960049_72962129_72962257_72963447_72963505_72963596_72963654_72964481
ENSMUSG00000021098.15_72959825_72964631_2	chr12	-	537	5	ISM	ENSMUSG00000021098.15	ENSMUST00000131033.8	1939	8	0	6817	0	136	5prime_fragment	FALSE	canonical	3	10	junction_4	10.280442597476	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGCCTATTATAAATTCC	NA	False	NA	NA	False	AGTAAA	-24	NA	72964631	72959824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_72960049_72962129_72962257_72963447_72963505_72963596_72963654_72964559
ENSMUSG00000021098.15_72959825_72964713_1	chr12	-	531	5	NNC	ENSMUSG00000021098.15	novel	640	5	NA	NA	-33	136	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	10.917302780449	77	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGCCTATTATAAATTCC	NA	False	NA	NA	False	AGTAAA	-24	NA	72964713	72959824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_72960049_72962129_72962257_72963447_72963505_72963596_72963654_72964647
ENSMUSG00000021103.13_73158875_73319626_1	chr12	+	1461	9	NNC	ENSMUSG00000021103.13	novel	2505	8	NA	NA	-11616	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	125.672938614485	621	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTTGTGGGATTTTTTT	NA	False	NA	7	True	AATAAA	-17	NA	73158874	73319626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_73159029_73170552_73170701_73214773_73214927_73217367_73217442_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
ENSMUSG00000021103.13_73170491_73319625_1	chr12	+	1368	8	FSM	ENSMUSG00000021103.13	ENSMUST00000021523.7	2505	8	0	1137	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	110.46488037344	2440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTTTGTGGGATTTTTT	NA	False	NA	6	True	AATAAA	-16	NA	73170490	73319625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_73170701_73214773_73214927_73217367_73217442_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
ENSMUSG00000021103.13_73170491_73319626_1	chr12	+	1366	8	NNC	ENSMUSG00000021103.13	novel	2505	8	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	135.958727230745	1928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTTGTGGGATTTTTTT	NA	False	NA	7	True	AATAAA	-17	NA	73170490	73319626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_73170705_73214780_73214927_73217367_73217442_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
ENSMUSG00000021103.13_73170491_73319626_2	chr12	+	1369	8	FSM	ENSMUSG00000021103.13	ENSMUST00000021523.7	2505	8	0	1136	0	1	multi-exon	FALSE	non_canonical	0	0	junction_6	110.46488037344	2464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTTGTGGGATTTTTTT	NA	False	NA	7	True	AATAAA	-17	NA	73170490	73319626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_73170701_73214773_73214927_73217367_73217442_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
ENSMUSG00000021109.14_73989060_73993665_1	chr12	+	1676	4	ISM	ENSMUSG00000021109.14	ENSMUST00000021530.8	4724	15	34382	639	4616	-639	3prime_fragment	FALSE	canonical	3	468	junction_2	17.8200885394982	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGGGTCAGCGCTTAC	NA	False	NA	19	True	AATAAA	-19	NA	73989059	73993665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_73989160_73990852_73990962_73991684_73991812_73992325
ENSMUSG00000021111.16_105750997_105777671_1	chr12	+	1381	10	ISM	ENSMUSG00000021111.16	ENSMUST00000166498.8	2076	12	5	2657	0	0	5prime_fragment	FALSE	canonical	3	944	junction_9	257.973776062224	1095	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGTATATTTTTTTATT	NA	False	NA	NA	False	AATAAA	-14	NA	105750996	105777671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295
ENSMUSG00000021111.16_105751131_105775968_1	chr12	+	918	9	FSM	ENSMUSG00000021111.16	ENSMUST00000166735.8	1033	9	115	0	0	0	multi-exon	FALSE	canonical	3	1577	junction_3	94.8235202890085	2320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAGTCTTATTTCTGTGA	NA	False	NA	17	True	AATAAA	-20	NA	105751130	105775968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782
ENSMUSG00000021113.6_74011255_74031165_1	chr12	+	1745	10	FSM	ENSMUSG00000021113.6	ENSMUST00000021532.6	6275	10	-45	4575	0	284	multi-exon	FALSE	canonical	3	65	junction_3	11.7473401244707	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTAGTGTGTGAAATTT	NA	False	NA	9	True	AATAAA	-21	NA	74011254	74031165	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_74011521_74014681_74014842_74015012_74015154_74016300_74016406_74016954_74017114_74018658_74018728_74019310_74019374_74021784_74021936_74029251_74029354_74030636
ENSMUSG00000021113.6_74011300_74016736_1	chr12	+	958	4	ISM	ENSMUSG00000021113.6	ENSMUST00000021532.6	6275	10	0	19004	0	1963	5prime_fragment	FALSE	canonical	3	65	junction_3	14.8174071805952	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	74011299	74016736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_74011521_74014681_74014842_74015012_74015154_74016300
ENSMUSG00000021114.10_78889776_78908273_1	chr12	-	1248	9	NNC	ENSMUSG00000021114.10	novel	3667	9	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	345.738249981109	1484	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAATGATTTTAAAAACA	108	False	NA	-21	True	TTTAAA	-18	NA	78908273	78889775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_78890385_78891999_78892079_78894540_78894608_78895169_78895274_78896513_78896559_78897245_78897314_78899038_78899119_78904000_78904112_78908188
ENSMUSG00000021114.10_78889776_78908327_2	chr12	-	1297	9	NNC	ENSMUSG00000021114.10	novel	3667	9	NA	NA	-58	0	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_6	328.779466360051	3626	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAATGATTTTAAAAACA	54	False	NA	-21	True	TTTAAA	-18	NA	78908327	78889775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_78890385_78891999_78892079_78894540_78894608_78895169_78895274_78896513_78896559_78897245_78897306_78899038_78899119_78904000_78904119_78908192
ENSMUSG00000021114.10_78889776_78908327_3	chr12	-	1301	8	NNC	ENSMUSG00000021114.10	novel	3667	9	NA	NA	-58	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	355.676303193031	2450	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAATGATTTTAAAAACA	54	False	NA	-21	True	TTTAAA	-18	NA	78908327	78889775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_78890385_78891999_78892079_78894540_78894608_78895169_78895274_78897204_78897314_78899038_78899119_78904000_78904119_78908192
ENSMUSG00000021114.10_78889776_78908327_4	chr12	-	1302	9	NNC	ENSMUSG00000021114.10	novel	3667	9	NA	NA	-58	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	343.872046515852	3619	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAATGATTTTAAAAACA	54	False	NA	-21	True	TTTAAA	-18	NA	78908327	78889775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_78890378_78891995_78892079_78894540_78894608_78895169_78895274_78896513_78896559_78897245_78897314_78899038_78899119_78904000_78904119_78908192
ENSMUSG00000021115.16_105976542_106041459_1	chr12	+	1424	14	NNC	ENSMUSG00000021115.16	novel	2520	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	91	junction_1	273.081235068881	1278	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976541	106041459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_105976548_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
ENSMUSG00000021115.16_105976551_106041459_1	chr12	+	573	5	NIC	ENSMUSG00000021115.16	novel	3711	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	6	junction_3	400.29770171711	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976550	106041459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_105976618_106002798_106002964_106009095_106009152_106036783_106036875_106041265
ENSMUSG00000021115.16_105976551_106041459_2	chr12	+	1497	14	NIC	ENSMUSG00000021115.16	novel	1742	15	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_13	331.233913308169	1961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976550	106041459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106037828_106037901_106041265
ENSMUSG00000021115.16_105976551_106041459_3	chr12	+	1125	10	NIC	ENSMUSG00000021115.16	novel	3711	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	83	junction_3	320.534314720874	588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976550	106041459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_105976618_106002798_106002964_106009095_106009152_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
ENSMUSG00000021115.16_105976551_106041459_4	chr12	+	1419	13	NNC	ENSMUSG00000021115.16	novel	3711	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	298.618892663468	1712	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976550	106041459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025882_106025936_106028888_106029068_106036783_106036875_106041265
ENSMUSG00000021115.16_105976551_106041459_5	chr12	+	633	6	NIC	ENSMUSG00000021115.16	novel	3711	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	6	junction_3	353.824250158182	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976550	106041459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_105976618_106002798_106002964_106009095_106009152_106036783_106036875_106039877_106039938_106041265
ENSMUSG00000021115.16_105976551_106041459_6	chr12	+	1065	9	NIC	ENSMUSG00000021115.16	novel	3711	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	83	junction_3	336.388168638554	570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976550	106041459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_105976618_106002798_106002964_106009095_106009152_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106041265
ENSMUSG00000021115.16_105976551_106041459_7	chr12	+	1836	14	NNC	ENSMUSG00000021115.16	novel	3711	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	286.853445871379	1325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976550	106041459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_105976969_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
ENSMUSG00000021115.16_105976551_106041459_8	chr12	+	1557	15	FSM	ENSMUSG00000021115.16	ENSMUST00000021539.16	1742	15	-24	209	0	0	multi-exon	FALSE	canonical	3	113	junction_12	308.222032678671	1926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976550	106041459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106037828_106037901_106039877_106039938_106041265
ENSMUSG00000021115.16_105976551_106041668_1	chr12	+	1274	9	NIC	ENSMUSG00000021115.16	novel	3711	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	83	junction_3	336.388168638554	799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAAGCGTTTATTGAATG	NA	False	NA	23	True	AATAAA	-29	NA	105976550	106041668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_105976618_106002798_106002964_106009095_106009152_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106041265
ENSMUSG00000021116.11_78908859_78932095_1	chr12	+	1450	8	FSM	ENSMUSG00000021116.11	ENSMUST00000071230.8	3405	8	266	1689	0	-1689	multi-exon	FALSE	canonical	3	3896	junction_3	411.382487498445	16922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTAGGCTTCTTCCTTCTT	NA	False	NA	24	True	AATAAA	-17	NA	78908858	78932095	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
ENSMUSG00000021116.11_78908859_78932303_1	chr12	+	1658	8	FSM	ENSMUSG00000021116.11	ENSMUST00000071230.8	3405	8	266	1481	0	-1481	multi-exon	FALSE	canonical	3	3896	junction_3	411.382487498445	17428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTACTTGAAAGCAGTGATA	NA	False	NA	26	True	ATTAAA	-19	NA	78908858	78932303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
ENSMUSG00000021120.12_79128805_79136419_1	chr12	-	966	4	FSM	ENSMUSG00000021120.12	ENSMUST00000072154.9	2339	4	6	1367	0	-783	multi-exon	FALSE	canonical	3	102	junction_1	16.0485374896143	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACACTGAAAACTTTAAGT	NA	False	NA	NA	False	NA	NA	NA	79136419	79128804	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_79129271_79130389_79130474_79132420_79132631_79136213
ENSMUSG00000021120.12_79128973_79136419_1	chr12	-	798	4	FSM	ENSMUSG00000021120.12	ENSMUST00000072154.9	2339	4	6	1535	0	-951	multi-exon	FALSE	canonical	3	102	junction_1	16.0485374896143	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATCAAGGGGAGACCTTAA	NA	False	NA	NA	False	AATACA	-17	NA	79136419	79128972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_79129271_79130389_79130474_79132420_79132631_79136213
ENSMUSG00000021124.14_79203103_79219222_1	chr12	-	1042	7	NNC	ENSMUSG00000021124.14	novel	1490	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	35	junction_5	321.69641485931	129	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGTGAAGGAACAGCAACA	NA	False	NA	-75	True	NA	NA	NA	79219222	79203102	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79213124_79213184_79218391_79218475_79218993
ENSMUSG00000021124.14_79203103_79219222_2	chr12	-	959	6	FSM	ENSMUSG00000021124.14	ENSMUST00000055262.13	1490	6	219	312	0	0	multi-exon	FALSE	canonical	3	652	junction_4	37.0534748707864	2061	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGTGAAGGAACAGCAACA	NA	False	NA	-75	True	NA	NA	NA	79219222	79203102	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79213124_79213184_79218993
ENSMUSG00000021124.14_79203103_79219222_3	chr12	-	954	6	NNC	ENSMUSG00000021124.14	novel	1490	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	289.79095914124	1417	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGTGAAGGAACAGCAACA	NA	False	NA	-75	True	NA	NA	NA	79219222	79203102	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79213124_79213179_79218993
ENSMUSG00000021124.14_79203103_79219441_1	chr12	-	1178	6	FSM	ENSMUSG00000021124.14	ENSMUST00000055262.13	1490	6	0	312	0	0	multi-exon	FALSE	canonical	3	652	junction_4	37.0534748707864	2654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGTGAAGGAACAGCAACA	NA	False	NA	-75	True	NA	NA	NA	79219441	79203102	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79213124_79213184_79218993
ENSMUSG00000021131.15_80680796_80690574_1	chr12	-	809	5	FSM	ENSMUSG00000021131.15	ENSMUST00000166931.2	506	5	32	-335	0	0	multi-exon	FALSE	canonical	3	979	junction_4	3763.79924411491	75175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTTTTCTTATTTATTT	NA	False	NA	-1	True	AATAAA	-31	NA	80690574	80680795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80689562_80689620_80690537
ENSMUSG00000021131.15_80680796_80690622_1	chr12	-	800	4	FSM	ENSMUSG00000021131.15	ENSMUST00000021559.14	1293	4	493	0	0	0	multi-exon	FALSE	canonical	3	8000	junction_3	570.898122843881	84552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTTTTCTTATTTATTT	NA	False	NA	-1	True	AATAAA	-31	NA	80690622	80680795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80690537
ENSMUSG00000021131.15_80680952_80690622_1	chr12	-	644	4	FSM	ENSMUSG00000021131.15	ENSMUST00000021559.14	1293	4	493	156	0	-156	multi-exon	FALSE	canonical	3	8000	junction_3	570.898122843881	7721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGTTCCGGTCCTTGAA	NA	False	NA	NA	False	AATACA	-26	NA	80690622	80680951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80690537
ENSMUSG00000021134.18_80992306_80993644_1	chr12	+	436	2	FSM	ENSMUSG00000021134.18	ENSMUST00000151968.2	489	2	-47	100	0	22	multi-exon	FALSE	canonical	3	1278	junction_1	0	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGTGGGTAGAGCTCTTG	NA	False	NA	NA	False	NA	NA	NA	80992305	80993644	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_80992447_80993349
ENSMUSG00000021134.18_80992306_80996947_1	chr12	+	1168	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110351.8	1498	8	0	330	0	-324	multi-exon	FALSE	canonical	3	289	junction_7	580.121838012305	4100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCTCACACTTTTGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	80992305	80996947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
ENSMUSG00000021134.18_80992306_80996947_2	chr12	+	1291	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110356.3	1568	8	-53	330	0	-324	multi-exon	FALSE	canonical	3	562	junction_1	476.276244656911	2093	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCTCACACTTTTGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	80992305	80996947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
ENSMUSG00000021134.18_80992306_80997132_1	chr12	+	1353	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110351.8	1498	8	0	145	0	-139	multi-exon	FALSE	canonical	3	289	junction_7	580.121838012305	5436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTCTAAATTTGCTTGTA	NA	False	NA	7	True	ATTAAA	-29	NA	80992305	80997132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
ENSMUSG00000021136.14_81066200_81231563_1	chr12	+	1558	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7382	-1621	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	43.9365072196991	75	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTTATTCTCTCTTTTA	NA	False	NA	NA	False	AAGAAA	-2	NA	81066199	81231563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_81066271_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
ENSMUSG00000021136.14_81066200_81233188_1	chr12	+	3183	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7382	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	43.9365072196991	416	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81066199	81233188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_81066271_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
ENSMUSG00000021136.14_81230659_81233188_1	chr12	+	2023	2	ISM	ENSMUSG00000021136.14	ENSMUST00000021564.11	3439	13	157057	-4	157057	0	3prime_fragment	FALSE	canonical	3	175	junction_1	0	301	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81230658	81233188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_81230816_81231322
ENSMUSG00000021139.18_81405800_81579651_1	chr12	-	849	6	FSM	ENSMUSG00000021139.18	ENSMUST00000164386.8	1043	6	28	166	0	-166	multi-exon	FALSE	canonical	3	129	junction_3	83.1899032335054	650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGTTCTCAGTGTTCC	NA	False	NA	-46	True	AATAAA	-19	NA	81579651	81405799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
ENSMUSG00000021139.18_81405800_81579651_2	chr12	-	712	5	NIC	ENSMUSG00000021139.18	novel	1043	6	NA	NA	0	-166	combination_of_known_junctions	FALSE	canonical	3	34	junction_4	124.884696820707	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGTTCTCAGTGTTCC	NA	False	NA	-46	True	AATAAA	-19	NA	81579651	81405799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_81406119_81521360_81521424_81527704_81527777_81551317_81551414_81579489
ENSMUSG00000021139.18_81405800_81579651_3	chr12	-	616	4	Fusion	ENSMUSG00000090935.11_ENSMUSG00000091803.8	novel	668	4	NA	NA	3	0	multi-exon	FALSE	canonical	1	2	junction_3	152.685588347063	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGTTCTCAGTGTTCC	NA	False	NA	-46	True	AATAAA	-19	NA	81579651	81405799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr12_-_81406119_81521360_81521424_81527704_81527777_81579489
ENSMUSG00000021139.18_81518869_81579651_1	chr12	-	607	6	NIC	ENSMUSG00000021139.18	novel	2284	6	NA	NA	0	-1492	combination_of_known_splicesites	FALSE	canonical	3	31	junction_1	113.684827483706	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTGTATGCTTTTCAGT	NA	False	NA	-8	True	ATTAAA	-12	NA	81579651	81518868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_81518946_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
ENSMUSG00000021139.18_81518869_81579651_2	chr12	-	787	6	FSM	ENSMUSG00000021139.18	ENSMUST00000166664.2	2284	6	5	1492	0	-1492	multi-exon	FALSE	canonical	3	129	junction_3	88.6715286887511	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTGTATGCTTTTCAGT	NA	False	NA	-8	True	ATTAAA	-12	NA	81579651	81518868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_81519126_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
ENSMUSG00000021149.9_9022516_9046086_1	chr13	-	2601	17	FSM	ENSMUSG00000021149.9	ENSMUST00000222098.2	8783	17	33	6149	0	0	multi-exon	FALSE	canonical	3	688	junction_6	47.6523871385264	3505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	AATAAA	-41	NA	9046086	9022515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
ENSMUSG00000021149.9_9022661_9046086_1	chr13	-	2456	17	FSM	ENSMUSG00000021149.9	ENSMUST00000222098.2	8783	17	33	6294	0	-145	multi-exon	FALSE	canonical	3	688	junction_6	47.6523871385264	3305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGATGACTTACATTTTG	NA	False	NA	-14	True	AGTAAA	-18	NA	9046086	9022660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
ENSMUSG00000021156.18_9745711_9815196_1	chr13	-	724	6	ISM	ENSMUSG00000021156.18	ENSMUST00000062658.15	3796	14	0	10837	0	-537	5prime_fragment	FALSE	canonical	3	34	junction_5	56.1334125098412	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTCTTTGTAATTCATAC	NA	False	NA	0	True	ATTAAA	-22	NA	9815196	9745710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_9745863_9747679_9747773_9748663_9748742_9770808_9770969_9785367_9785503_9815090
ENSMUSG00000021176.7_99684935_99849682_1	chr12	-	905	6	FSM	ENSMUSG00000021176.7	ENSMUST00000046485.5	2068	6	19	1144	0	0	multi-exon	FALSE	canonical	3	69	junction_2	7.87400787401181	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTGTCATTGCCATTCAC	NA	False	NA	NA	False	NA	NA	NA	99849682	99684934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_99685363_99820868_99820960_99821796_99821899_99844615_99844662_99849020_99849117_99849540
ENSMUSG00000021176.7_99685165_99849682_1	chr12	-	675	6	FSM	ENSMUSG00000021176.7	ENSMUST00000046485.5	2068	6	19	1374	0	-184	multi-exon	FALSE	canonical	3	69	junction_2	7.87400787401181	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTGAATGCTGATATTG	NA	False	NA	-14	True	AGTAAA	-13	NA	99849682	99685164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_99685363_99820868_99820960_99821796_99821899_99844615_99844662_99849020_99849117_99849540
ENSMUSG00000021177.17_99850776_99872758_1	chr12	+	1301	7	ISM	ENSMUSG00000021177.17	ENSMUST00000151019.8	3945	14	0	30863	0	-6080	5prime_fragment	FALSE	canonical	3	362	junction_1	62.5604152444304	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGTTGGTTTGTGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	99850775	99872758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294
ENSMUSG00000021180.10_100560643_100691330_1	chr12	-	1175	8	NIC	ENSMUSG00000021180.10	novel	1039	8	NA	NA	-43	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	9.9979589753844	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAACGTGTTTATAAAC	NA	False	NA	NA	False	NA	NA	NA	100691330	100560642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_100560824_100562073_100562178_100564148_100564233_100582255_100582364_100585784_100585901_100620529_100620749_100644776_100644849_100691039
ENSMUSG00000021188.15_101868494_101879382_1	chr12	-	604	3	ISM	ENSMUSG00000021188.15	ENSMUST00000176728.2	1186	9	17	12489	0	10041	5prime_fragment	FALSE	canonical	3	11	junction_2	5	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCAAGAGCTGGTTTTCG	7565	False	NA	NA	False	NA	NA	NA	101879382	101868493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_101868602_101872013_101872076_101878948
ENSMUSG00000021189.12_101888403_101924428_1	chr12	-	2043	11	FSM	ENSMUSG00000021189.12	ENSMUST00000021606.12	5363	11	77	3243	-21	937	multi-exon	FALSE	canonical	3	190	junction_2	46.8375917399689	623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTGGGTTGACCCTTGC	NA	False	NA	NA	False	AATAAA	-15	NA	101924428	101888402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_101889464_101892742_101892841_101899226_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
ENSMUSG00000021189.12_101889340_101924428_1	chr12	-	1106	11	FSM	ENSMUSG00000021189.12	ENSMUST00000021606.12	5363	11	77	4180	-21	0	multi-exon	FALSE	canonical	3	190	junction_2	46.8375917399689	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTTTGTAACATTGTCTG	NA	False	NA	NA	False	AAGAAA	-34	NA	101924428	101889339	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_101889464_101892742_101892841_101899226_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
ENSMUSG00000021189.12_101892427_101924502_1	chr12	-	1372	10	ISM	ENSMUSG00000021189.12	ENSMUST00000021606.12	5363	11	3	7267	0	-3087	5prime_fragment	FALSE	canonical	3	190	junction_1	41.7943229649526	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCTTTTCCTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	101924502	101892426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_101892841_101899226_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
ENSMUSG00000021193.11_6598195_6615245_1	chr13	+	1855	15	ISM	ENSMUSG00000021193.11	ENSMUST00000222485.2	3906	27	8	15306	0	-5447	5prime_fragment	FALSE	canonical	3	407	junction_1	154.246886648698	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTTGTAGAGCTCTGCT	NA	False	NA	NA	False	AAAACA	-14	NA	6598194	6615245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026
ENSMUSG00000021193.11_6627480_6630078_1	chr13	+	714	4	ISM	ENSMUSG00000021193.11	ENSMUST00000021611.10	3318	26	29295	0	283	0	3prime_fragment	FALSE	canonical	3	974	junction_1	64.1924190747371	153	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGTTTTACTCATTATT	NA	False	NA	16	True	TATAAA	-17	NA	6627479	6630078	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_6627552_6628476_6628623_6629453_6629557_6629685
ENSMUSG00000021196.15_6598195_6630078_1	chr13	-	3425	27	NIC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	7053	31609	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCCAGTGTGGGACTGC	6591	False	NA	NA	False	NA	NA	NA	6630078	6598194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
ENSMUSG00000021196.15_6631218_6686686_1	chr13	-	2614	22	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	76	junction_21	274.502022841759	1939	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCCCATGGTACTTGG	NA	False	NA	-14	True	ATTAAA	-10	NA	6686686	6631217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6686596
ENSMUSG00000021196.15_6631218_6698761_1	chr13	-	2672	22	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	275.753965398698	1910	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCCCATGGTACTTGG	NA	False	NA	-14	True	ATTAAA	-10	NA	6698761	6631217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_6631629_6632438_6632542_6634636_6634730_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
ENSMUSG00000021200.15_103287405_103290210_1	chr12	-	718	2	ISM	ENSMUSG00000021200.15	ENSMUST00000127447.2	2399	6	11633	0	11633	0	3prime_fragment	FALSE	canonical	3	41	junction_1	0	465	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTTCTGCCCTGTGATT	NA	False	NA	-6	True	AATAAA	-11	NA	103290210	103287404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_103287934_103290021
ENSMUSG00000021218.11_3588130_3615262_1	chr13	+	1627	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	67	2609	0	45	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCAGTGAATGCTCCTTCA	NA	False	NA	NA	False	NA	NA	NA	3588129	3615262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
ENSMUSG00000021218.11_3588130_3615821_1	chr13	+	2186	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	67	2050	0	1	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	3081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	36	True	AATAAA	-19	NA	3588129	3615821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
ENSMUSG00000021218.11_3588130_3616207_1	chr13	+	2572	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	67	1664	0	387	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	3217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACTTTTGTAGTGCAGCA	NA	False	NA	7	True	AATAAA	-16	NA	3588129	3616207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
ENSMUSG00000021222.10_83567358_83588694_1	chr12	+	1895	14	FSM	ENSMUSG00000021222.10	ENSMUST00000021645.9	2008	14	118	-5	-50	0	multi-exon	FALSE	canonical	3	216	junction_9	23.528907060372	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAATTTTGCCAAAGTATA	NA	False	NA	15	True	NA	NA	NA	83567357	83588694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_83567392_83572917_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580640_83580785_83581633_83581684_83582673_83582754_83584486_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
ENSMUSG00000021224.16_83878602_83968665_1	chr12	-	529	4	ISM	ENSMUSG00000021224.16	ENSMUST00000136848.8	567	6	-8	23651	-1	0	5prime_fragment	FALSE	canonical	3	81	junction_2	23.3666428910958	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAACATCT	NA	False	NA	NA	False	NA	NA	NA	83968665	83878601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_83878771_83888991_83889133_83923441_83923587_83968591
ENSMUSG00000021235.14_84408815_84420566_1	chr12	+	1462	11	NIC	ENSMUSG00000021235.14	novel	1776	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_6	69.5125887879311	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTCTTTTCCTCTT	NA	False	NA	13	True	AATAAA	-13	NA	84408814	84420566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
ENSMUSG00000021235.14_84408815_84420566_2	chr12	+	1520	12	NNC	ENSMUSG00000021235.14	novel	1776	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	68.1940595071603	1875	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTCTTTTCCTCTT	NA	False	NA	13	True	AATAAA	-13	NA	84408814	84420566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418224_84418333_84418917_84419116_84419192_84419309_84419424_84419592_84420452
ENSMUSG00000021235.14_84408815_84420566_3	chr12	+	1518	12	NNC	ENSMUSG00000021235.14	novel	1776	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	68.2834394210892	1929	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTCTTTTCCTCTT	NA	False	NA	13	True	AATAAA	-13	NA	84408814	84420566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417888_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
ENSMUSG00000021240.7_84649307_84660929_1	chr12	-	2200	16	NIC	ENSMUSG00000021240.7	novel	2581	19	NA	NA	1232	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_14	54.7530212256213	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATAGACTGATTTTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	84660929	84649306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659220_84659553_84659671_84660678
ENSMUSG00000021240.7_84649307_84664157_1	chr12	-	2442	19	FSM	ENSMUSG00000021240.7	ENSMUST00000021666.6	2309	19	-13	-120	-13	0	multi-exon	FALSE	canonical	3	128	junction_18	37.2765772285566	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATAGACTGATTTTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	84664157	84649306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
ENSMUSG00000021241.8_84820052_84821579_1	chr12	+	576	4	FSM	ENSMUSG00000021241.8	ENSMUST00000021667.7	883	4	27	280	0	1	multi-exon	FALSE	canonical	0	0	junction_3	133.217449641137	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGGCTCTCATCTTATT	NA	False	NA	NA	False	NA	NA	NA	84820051	84821579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84820146_84820348_84820452_84820566_84820683_84821316
ENSMUSG00000021241.8_84820052_84821862_1	chr12	+	722	3	FSM	ENSMUSG00000021241.8	ENSMUST00000222449.2	374	3	0	-348	0	0	multi-exon	FALSE	canonical	3	86	junction_1	24	1119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	15	True	TATAAA	-18	NA	84820051	84821862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84820146_84820369_84820452_84821316
ENSMUSG00000021241.8_84820052_84821862_2	chr12	+	1608	2	FSM	ENSMUSG00000021241.8	ENSMUST00000223089.2	843	2	-13	-752	0	0	multi-exon	FALSE	canonical	3	319	junction_1	0	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	15	True	TATAAA	-18	NA	84820051	84821862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84820146_84820348
ENSMUSG00000021241.8_84820052_84821862_3	chr12	+	743	3	FSM	ENSMUSG00000021241.8	ENSMUST00000222022.2	485	3	-47	-211	0	0	multi-exon	FALSE	canonical	3	134	junction_2	92.5	1205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	15	True	TATAAA	-18	NA	84820051	84821862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84820146_84820348_84820452_84821316
ENSMUSG00000021242.10_84803266_84819688_1	chr12	-	1131	4	FSM	ENSMUSG00000021242.10	ENSMUST00000021668.10	3299	4	238	1930	0	0	multi-exon	FALSE	canonical	3	2850	junction_3	124.194292228839	23636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGCTTGGTTTTGTTTTT	NA	False	NA	-27	True	ATTAAA	-17	NA	84819688	84803265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_84803987_84807493_84807667_84812050_84812159_84819559
ENSMUSG00000021242.10_84803266_84819732_1	chr12	-	1175	4	FSM	ENSMUSG00000021242.10	ENSMUST00000021668.10	3299	4	194	1930	-44	0	multi-exon	FALSE	canonical	3	2850	junction_3	124.194292228839	24331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGCTTGGTTTTGTTTTT	NA	False	NA	-27	True	ATTAAA	-17	NA	84819732	84803265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_84803987_84807493_84807667_84812050_84812159_84819559
ENSMUSG00000021242.10_84803266_84819788_1	chr12	-	1231	4	FSM	ENSMUSG00000021242.10	ENSMUST00000021668.10	3299	4	138	1930	-100	0	multi-exon	FALSE	canonical	3	2850	junction_3	124.194292228839	24550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGCTTGGTTTTGTTTTT	NA	False	NA	-27	True	ATTAAA	-17	NA	84819788	84803265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_84803987_84807493_84807667_84812050_84812159_84819559
ENSMUSG00000021243.15_85017671_85030077_1	chr12	+	742	8	NNC	ENSMUSG00000021243.15	novel	749	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	762.358370921633	2894	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTTGTCTCAATTCTTA	4629	False	NA	23	True	ATTAAA	-25	NA	85017670	85030077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_85017740_85017988_85018057_85019763_85019836_85020871_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
ENSMUSG00000021243.15_85017671_85030077_2	chr12	+	744	8	NNC	ENSMUSG00000021243.15	novel	749	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	766.577684868778	2212	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTTGTCTCAATTCTTA	4629	False	NA	23	True	ATTAAA	-25	NA	85017670	85030077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_85017740_85017988_85018057_85019768_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
ENSMUSG00000021243.15_85017988_85030077_1	chr12	+	681	7	ISM	ENSMUSG00000021243.15	ENSMUST00000171040.2	731	8	233	-12	233	0	3prime_fragment	FALSE	canonical	3	1987	junction_6	120.703148260516	2069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTTGTCTCAATTCTTA	4946	False	NA	23	True	ATTAAA	-25	NA	85017987	85030077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_85018057_85019763_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
ENSMUSG00000021248.10_85389562_85421464_1	chr12	-	1319	5	NNC	ENSMUSG00000021248.10	novel	1482	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_3	558.623755313001	5791	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTCCTTGTGTATGTGT	8621	False	NA	-5	True	ATTAAA	-20	NA	85421464	85389561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_85390324_85390998_85391126_85397576_85397645_85401568_85401681_85421214
ENSMUSG00000021248.10_85389562_85421464_2	chr12	-	1325	5	FSM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	157	0	0	0	multi-exon	FALSE	canonical	3	1293	junction_2	34.3110769285955	5847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTCCTTGTGTATGTGT	8621	False	NA	-5	True	ATTAAA	-20	NA	85421464	85389561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
ENSMUSG00000021248.10_85389937_85421464_1	chr12	-	950	5	FSM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	157	375	0	202	multi-exon	FALSE	canonical	3	1293	junction_2	34.3110769285955	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGGTTACCTAGATAACG	8621	False	NA	NA	False	ATTAAA	-42	NA	85421464	85389936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
ENSMUSG00000021252.12_85862222_85871318_1	chr12	-	1266	5	NNC	ENSMUSG00000021252.12	novel	1169	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	344.212416249037	4761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCGTCTGTGTACTTTGGC	NA	False	NA	-4	True	AATAAA	-21	NA	85871318	85862221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_85862968_85863089_85863209_85866177_85866344_85868861_85869023_85871244
ENSMUSG00000021252.12_85862222_85871318_2	chr12	-	1030	4	NIC	ENSMUSG00000021252.12	novel	1169	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_3	367.864407387046	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCGTCTGTGTACTTTGGC	NA	False	NA	-4	True	AATAAA	-21	NA	85871318	85862221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_85862968_85863089_85863209_85866252_85866344_85871244
ENSMUSG00000021252.12_85862222_85871652_1	chr12	-	1525	5	FSM	ENSMUSG00000021252.12	ENSMUST00000021676.12	1169	5	-356	0	-328	0	multi-exon	FALSE	canonical	3	716	junction_4	65.9104506129339	5177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCGTCTGTGTACTTTGGC	NA	False	NA	-4	True	AATAAA	-21	NA	85871652	85862221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_85862968_85863089_85863209_85866252_85866344_85868861_85869023_85871244
ENSMUSG00000021255.18_86516891_86568402_1	chr12	+	668	2	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1680	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTTCATGCGTTGTCTGT	NA	False	NA	19	True	AATAAA	-19	NA	86516890	86568402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_86517123_86567966
ENSMUSG00000021262.16_108642362_108654775_1	chr12	+	989	8	ISM	ENSMUSG00000021262.16	ENSMUST00000172409.2	1955	15	40350	-3	0	0	3prime_fragment	FALSE	canonical	3	151	junction_2	17.4274004290452	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGGCTCTGGCTCACTCT	6116	False	NA	17	True	AATAAA	-17	NA	108642361	108654775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_108642483_108646087_108646149_108647749_108647814_108649453_108649521_108649606_108649670_108652308_108652376_108652666_108652725_108654287
ENSMUSG00000021262.16_108652681_108654775_1	chr12	+	532	2	ISM	ENSMUSG00000021262.16	ENSMUST00000223548.2	569	3	325	0	325	0	3prime_fragment	FALSE	canonical	3	199	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGGCTCTGGCTCACTCT	4276	False	NA	17	True	AATAAA	-17	NA	108652680	108654775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_108652725_108654287
ENSMUSG00000021266.17_108825956_108860063_1	chr12	-	1859	11	NIC	ENSMUSG00000021266.17	novel	2878	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	246	junction_1	519.514003661114	1431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	-31	True	AATAAA	-19	NA	108860063	108825955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_108826260_108827194_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
ENSMUSG00000021268.18_109506888_109538160_1	chr12	+	1763	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	187	junction_2	97.0602261485105	884	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506887	109538160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ENSMUSG00000021268.18_109506888_109538160_2	chr12	+	1682	8	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	137.349249457471	810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506887	109538160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109512312_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ENSMUSG00000021268.18_109506888_109538160_3	chr12	+	1726	8	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	128.442792792777	931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506887	109538160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ENSMUSG00000021268.18_109506888_109538160_4	chr12	+	1807	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	241	junction_3	82.0182906430023	950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	ACTAAA	-1	NA	109506887	109538160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
ENSMUSG00000021270.14_110657462_110662743_1	chr12	-	2772	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	86	423	-20	0	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	59543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGAATGTGTCTTTTCT	NA	False	NA	-5	True	GATAAA	-21	NA	110662743	110657461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
ENSMUSG00000021270.14_110660609_110662743_1	chr12	-	890	5	ISM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	86	3570	-20	0	5prime_fragment	FALSE	canonical	3	11114	junction_1	618.781261836523	29370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAGAAGATAAAGGAAAAG	NA	False	NA	NA	False	NA	NA	NA	110662743	110660608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
ENSMUSG00000021273.12_63383852_63415260_1	chr14	-	1628	8	FSM	ENSMUSG00000021273.12	ENSMUST00000054963.10	2860	8	-18	1250	-14	-1250	multi-exon	FALSE	canonical	3	727	junction_5	70.2819395037456	4097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCCTTGTCTTTCTCAT	4293	False	NA	-34	True	AATAGA	-13	NA	63415260	63383851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_63384418_63388598_63388752_63389775_63389953_63394007_63394200_63396466_63396596_63400750_63400935_63401980_63402079_63415131
ENSMUSG00000021273.12_63383852_63415312_1	chr14	-	1680	8	FSM	ENSMUSG00000021273.12	ENSMUST00000054963.10	2860	8	-70	1250	-66	-1250	multi-exon	FALSE	canonical	3	727	junction_5	70.2819395037456	4206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCCTTGTCTTTCTCAT	4241	False	NA	-34	True	AATAGA	-13	NA	63415312	63383851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_63384418_63388598_63388752_63389775_63389953_63394007_63394200_63396466_63396596_63400750_63400935_63401980_63402079_63415131
ENSMUSG00000021276.11_110839596_110855559_1	chr12	-	1457	5	FSM	ENSMUSG00000021276.11	ENSMUST00000043716.9	2029	5	20	552	-1	0	multi-exon	FALSE	canonical	3	237	junction_1	85.0951673128386	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACATATTAATCCTGTTG	3369	False	NA	-10	True	NA	NA	NA	110855559	110839595	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_110840564_110843274_110843405_110846118_110846249_110850323_110850493_110855499
ENSMUSG00000021276.11_110839596_110855559_2	chr12	-	1327	4	FSM	ENSMUSG00000021276.11	ENSMUST00000221102.2	536	4	-6	-785	-1	0	multi-exon	FALSE	canonical	2	10	junction_1	203.882318997995	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACATATTAATCCTGTTG	3369	False	NA	-10	True	NA	NA	NA	110855559	110839595	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_110840564_110846118_110846249_110850323_110850493_110855499
ENSMUSG00000021276.11_110840082_110855559_1	chr12	-	841	4	FSM	ENSMUSG00000021276.11	ENSMUST00000221102.2	536	4	-6	-299	-1	0	multi-exon	FALSE	canonical	2	10	junction_1	203.882318997995	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTCTTTTTTGTG	3369	False	NA	6	True	NA	NA	NA	110855559	110840081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_110840564_110846118_110846249_110850323_110850493_110855499
ENSMUSG00000021276.11_110840082_110855559_2	chr12	-	971	5	FSM	ENSMUSG00000021276.11	ENSMUST00000043716.9	2029	5	20	1038	-1	0	multi-exon	FALSE	canonical	3	237	junction_1	85.0951673128386	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTCTTTTTTGTG	3369	False	NA	6	True	NA	NA	NA	110855559	110840081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_110840564_110843274_110843405_110846118_110846249_110850323_110850493_110855499
ENSMUSG00000021276.11_110844029_110855559_1	chr12	-	757	4	NNC	ENSMUSG00000021276.11	novel	744	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	208.591040608705	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTAGTTATTTCTGT	3369	False	NA	-3	True	AATAAA	-18	NA	110855559	110844028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_110844427_110846118_110846249_110850323_110850493_110855499
ENSMUSG00000021276.11_110844029_110855559_2	chr12	-	809	5	NNC	ENSMUSG00000021276.11	novel	744	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	213.008802635008	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTAGTTATTTCTGT	3369	False	NA	-3	True	AATAAA	-18	NA	110855559	110844028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_110844427_110845421_110845474_110846118_110846249_110850323_110850493_110855499
ENSMUSG00000021276.11_110844029_110855559_3	chr12	-	1867	4	NNC	ENSMUSG00000021276.11	novel	744	5	NA	NA	-1	0	intron_retention	FALSE	canonical	3	5	junction_1	206.236649399556	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTAGTTATTTCTGT	3369	False	NA	-3	True	AATAAA	-18	NA	110855559	110844028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_110844549_110845130_110846249_110850323_110850493_110855499
ENSMUSG00000021276.11_110844029_110855559_4	chr12	-	1222	5	NNC	ENSMUSG00000021276.11	novel	744	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	211.668815605889	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTAGTTATTTCTGT	3369	False	NA	-3	True	AATAAA	-18	NA	110855559	110844028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_110844549_110845130_110845474_110846118_110846249_110850323_110850493_110855499
ENSMUSG00000021278.8_111237266_111242693_1	chr12	+	1654	12	NNC	ENSMUSG00000021278.8	novel	1024	7	NA	NA	-263	7	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	8.49696105130758	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCTGGTCCTACTTGTAA	NA	False	NA	35	True	AATAAA	-28	NA	111237265	111242693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_111237456_111238130_111238250_111238331_111238377_111240576_111240665_111240792_111241011_111241144_111241283_111241387_111241497_111241590_111241674_111241778_111241927_111242005_111242184_111242266_111242361_111242449
ENSMUSG00000021278.8_111237529_111242693_1	chr12	+	1534	12	FSM	ENSMUSG00000021278.8	ENSMUST00000021707.8	1701	12	0	167	0	7	multi-exon	FALSE	canonical	3	12	junction_1	7.23969772438711	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCTGGTCCTACTTGTAA	NA	False	NA	35	True	AATAAA	-28	NA	111237528	111242693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_111237599_111238130_111238250_111238331_111238377_111240576_111240665_111240792_111241011_111241144_111241283_111241387_111241497_111241590_111241674_111241778_111241927_111242005_111242184_111242266_111242361_111242449
ENSMUSG00000021282.18_111506252_111511362_1	chr12	+	1511	9	ISM	ENSMUSG00000021282.18	ENSMUST00000050993.11	1969	11	1036	-5	175	5	3prime_fragment	FALSE	canonical	3	2160	junction_5	88.1524779855904	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTTGGGCTATGAATGGC	NA	False	NA	23	True	AATAAA	-24	NA	111506251	111511362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_111506317_111506563_111506737_111506894_111507007_111508139_111508280_111508585_111508745_111509113_111509276_111509533_111509699_111509960_111510096_111510962
ENSMUSG00000021286.9_111780669_111794820_1	chr12	+	1235	7	NNC	ENSMUSG00000021286.9	novel	1308	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	286.732550568567	3967	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCAGGCTCTGGCCTCA	NA	False	NA	16	True	ATTAAA	-17	NA	111780668	111794820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_111780812_111789683_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111793976_111794120_111794251
ENSMUSG00000021286.9_111780669_111794820_2	chr12	+	1297	8	FSM	ENSMUSG00000021286.9	ENSMUST00000223211.2	794	8	27	-530	0	0	multi-exon	FALSE	canonical	3	188	junction_5	258.732309855699	4710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCAGGCTCTGGCCTCA	NA	False	NA	16	True	ATTAAA	-17	NA	111780668	111794820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111792012_111792067_111793976_111794120_111794251
ENSMUSG00000021286.9_111780669_111794820_3	chr12	+	1234	7	NNC	ENSMUSG00000021286.9	novel	1308	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	284.428667097159	3756	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCAGGCTCTGGCCTCA	NA	False	NA	16	True	ATTAAA	-17	NA	111780668	111794820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111793976_111794120_111794260
ENSMUSG00000021290.7_111927809_111933414_2	chr12	-	358	3	NNC	ENSMUSG00000021290.7	novel	366	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1348	27930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGCTTCCCCTGAGTA	NA	False	NA	-7	True	AATAAA	-18	NA	111933414	111927808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_111927982_111929659_111929788_111933357
ENSMUSG00000021290.7_111927809_111933414_3	chr12	-	359	3	NNC	ENSMUSG00000021290.7	novel	366	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1348	27996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGCTTCCCCTGAGTA	NA	False	NA	-7	True	AATAAA	-18	NA	111933414	111927808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_111927983_111929659_111929788_111933357
ENSMUSG00000021290.7_111927950_111933414_1	chr12	-	228	4	FSM	ENSMUSG00000021290.7	ENSMUST00000021719.7	366	4	-3	141	-3	0	multi-exon	FALSE	canonical	3	2424	junction_1	129.659382828839	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAACTGCTCCGAATCCA	NA	False	NA	NA	False	NA	NA	NA	111933414	111927949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_111927973_111928866_111928891_111929663_111929788_111933357
ENSMUSG00000021302.11_14228263_14237836_1	chr13	-	988	4	FSM	ENSMUSG00000021302.11	ENSMUST00000170957.3	4244	4	237	3019	122	291	multi-exon	FALSE	canonical	3	192	junction_3	35.1883819210577	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGACTCAGTAGCTTCTTT	NA	False	NA	-4	True	AATAAA	-20	NA	14237836	14228262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14237790
ENSMUSG00000021302.11_14228263_14237998_1	chr13	-	1150	4	FSM	ENSMUSG00000021302.11	ENSMUST00000170957.3	4244	4	75	3019	0	291	multi-exon	FALSE	canonical	3	192	junction_3	35.1883819210577	822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGACTCAGTAGCTTCTTT	NA	False	NA	-4	True	AATAAA	-20	NA	14237998	14228262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14237790
ENSMUSG00000021302.11_14228433_14237998_1	chr13	-	980	4	FSM	ENSMUSG00000021302.11	ENSMUST00000170957.3	4244	4	75	3189	0	121	multi-exon	FALSE	canonical	3	192	junction_3	35.1883819210577	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGAGGATGTAGGTTCTT	NA	False	NA	NA	False	ATTAAA	-18	NA	14237998	14228432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14237790
ENSMUSG00000021306.12_13535496_13568180_1	chr13	-	1310	7	FSM	ENSMUSG00000021306.12	ENSMUST00000220628.2	3634	7	29	2295	0	-2295	multi-exon	FALSE	canonical	3	175	junction_3	22.9249984853992	904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAATTTGTCATTCTTAA	NA	False	NA	-3	True	AATATA	-44	NA	13568180	13535495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
ENSMUSG00000021311.10_12201424_12208620_1	chr13	-	1182	5	ISM	ENSMUSG00000021311.10	ENSMUST00000220473.2	1784	8	6756	0	6753	0	3prime_fragment	FALSE	canonical	3	181	junction_4	14.2543852901484	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGTTGAATACAAGGAGAA	NA	False	NA	46	True	ATTAAA	-15	NA	12208620	12201423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_12201978_12202926_12203040_12204232_12204426_12205089_12205291_12208499
ENSMUSG00000021314.14_19132521_19270971_1	chr13	+	661	5	ISM	ENSMUSG00000021314.14	ENSMUST00000200273.2	1756	9	-47	14825	0	-14825	5prime_fragment	FALSE	canonical	3	55	junction_2	6.83282518435822	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCCTCTTAGTGAACGCT	NA	False	NA	NA	False	AATAAA	-21	NA	19132520	19270971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692
ENSMUSG00000021322.9_21120557_21207873_1	chr13	+	1314	11	NNC	ENSMUSG00000021322.9	novel	2921	21	NA	NA	-74246	-549	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_6	9.14549069213894	92	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGGCATGTGTAGGTTAT	NA	False	NA	NA	False	AATGAA	-43	NA	21120556	21207873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_21120623_21125983_21126076_21163633_21163717_21178800_21178838_21179589_21179665_21184067_21184241_21186824_21186884_21187066_21187127_21189200_21189298_21197281_21197359_21207378
ENSMUSG00000021322.9_21120557_21208422_1	chr13	+	1863	11	NNC	ENSMUSG00000021322.9	novel	2921	21	NA	NA	-74246	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_6	9.14549069213894	162	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGGGCATAATTGTG	NA	False	NA	23	True	AATAAA	-16	NA	21120556	21208422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_21120623_21125983_21126076_21163633_21163717_21178800_21178838_21179589_21179665_21184067_21184241_21186824_21186884_21187066_21187127_21189200_21189298_21197281_21197359_21207378
ENSMUSG00000021339.5_25176921_25177720_1	chr13	-	319	2	ISM	ENSMUSG00000021339.5	ENSMUST00000021772.4	7035	11	26642	5455	1062	678	3prime_fragment	FALSE	canonical	3	177	junction_1	0	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTTTGAGACTAAGAAGAG	NA	False	NA	-3	True	ACTAAA	-20	NA	25177720	25176920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_25177172_25177652
ENSMUSG00000021339.5_25176921_25179454_1	chr13	-	610	4	ISM	ENSMUSG00000021339.5	ENSMUST00000021772.4	7035	11	24908	5455	-672	678	3prime_fragment	FALSE	canonical	3	172	junction_3	13.589211407093	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTTTGAGACTAAGAAGAG	NA	False	NA	-3	True	ACTAAA	-20	NA	25179454	25176920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_25177172_25177652_25177767_25178707_25178826_25179327
ENSMUSG00000021361.8_41169768_41176062_1	chr13	+	855	5	NIC	ENSMUSG00000021361.8	novel	914	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	108	junction_1	251.069089097005	7524	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTGTCGTCTTTGTTAG	NA	False	NA	15	True	AATAAA	-22	NA	41169767	41176062	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_41169875_41171181_41171259_41171831_41171934_41174594_41174683_41175581
ENSMUSG00000021368.16_43305320_43324884_1	chr13	-	1066	8	FSM	ENSMUSG00000021368.16	ENSMUST00000179852.9	1246	8	76	104	-20	0	multi-exon	FALSE	canonical	3	148	junction_7	48.9393627307283	984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATCACCTGCTCTACCAA	NA	False	NA	-121	True	NA	NA	NA	43324884	43305319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_43305457_43306545_43306676_43308164_43308311_43312738_43312877_43318754_43318943_43322249_43322331_43323277_43323424_43324784
ENSMUSG00000021373.17_46655601_46763584_1	chr13	+	577	6	ISM	ENSMUSG00000021373.17	ENSMUST00000021802.16	3713	13	277	40173	0	-27895	5prime_fragment	FALSE	canonical	3	12	junction_1	4.87442304278158	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTTTACACAAACAGGGT	NA	False	NA	NA	False	NA	NA	NA	46655600	46763584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_46655688_46678890_46679013_46684452_46684554_46713979_46714058_46763071_46763216_46763539
ENSMUSG00000021373.17_46655601_46802028_1	chr13	+	1707	13	FSM	ENSMUSG00000021373.17	ENSMUST00000021802.16	3713	13	277	1729	0	26	multi-exon	FALSE	canonical	3	12	junction_1	4.58257569495584	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGTGATTTTACTTC	NA	False	NA	NA	False	NA	NA	NA	46655600	46802028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_46655688_46678890_46679013_46684452_46684554_46713979_46714058_46763071_46763216_46763539_46763626_46768725_46768832_46789096_46789287_46791324_46791498_46793298_46793423_46793515_46793599_46800001_46800143_46801756
ENSMUSG00000021373.17_46799301_46802028_1	chr13	+	505	3	NNC	ENSMUSG00000021373.17	novel	3713	13	NA	NA	5767	26	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	13.5	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGTGATTTTACTTC	NA	False	NA	NA	False	NA	NA	NA	46799300	46802028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_46799393_46800001_46800143_46801756
ENSMUSG00000021373.17_46799869_46802028_1	chr13	+	546	2	ISM	ENSMUSG00000021373.17	ENSMUST00000225824.2	1634	12	144227	-26	6335	26	3prime_fragment	FALSE	canonical	3	30	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGTGATTTTACTTC	NA	False	NA	NA	False	NA	NA	NA	46799868	46802028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_46800143_46801756
ENSMUSG00000021375.12_46966216_46969140_1	chr13	-	834	2	NNC	ENSMUSG00000021375.12	novel	3426	26	NA	NA	-6607	-10224	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTATTTAAAGGTGAGAAGG	NA	False	NA	NA	False	NA	NA	NA	46969140	46966215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_46966409_46968499
ENSMUSG00000021376.12_47178655_47196614_1	chr13	-	1016	9	NIC	ENSMUSG00000021376.12	novel	2708	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_8	42.5996992360275	1082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATTAGCCATGGTTTC	NA	False	NA	-2	True	ATTAAA	-17	NA	47196614	47178654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195072_47196579
ENSMUSG00000021376.12_47178655_47196614_2	chr13	-	977	9	NIC	ENSMUSG00000021376.12	novel	2708	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_8	30.2438010177292	790	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATTAGCCATGGTTTC	NA	False	NA	-2	True	ATTAAA	-17	NA	47196614	47178654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196602
ENSMUSG00000021376.12_47178655_47196614_3	chr13	-	1000	9	FSM	ENSMUSG00000021376.12	ENSMUST00000021806.11	2708	9	72	1636	0	0	multi-exon	FALSE	canonical	3	68	junction_8	22.6436387314407	1226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATTAGCCATGGTTTC	NA	False	NA	-2	True	ATTAAA	-17	NA	47196614	47178654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196579
ENSMUSG00000021384.15_49384305_49401630_1	chr13	-	1139	5	FSM	ENSMUSG00000021384.15	ENSMUST00000058196.13	1418	5	140	139	0	0	multi-exon	FALSE	canonical	2	5	junction_4	5.02493781056044	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTAGCCACCTTATCATC	NA	False	NA	4	True	AATAAA	-16	NA	49401630	49384304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_49384808_49390899_49391089_49392264_49392413_49393958_49394148_49401520
ENSMUSG00000021385.11_49617499_49806243_1	chr13	+	948	6	NIC	ENSMUSG00000021385.11	novel	4421	13	NA	NA	42409	188194	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	129	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGAGCGCGCGCGCTCCTG	8350	False	NA	NA	False	NA	NA	NA	49617498	49806243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49803596_49803776_49806058
ENSMUSG00000021385.11_49617499_49806243_2	chr13	+	943	6	NNC	ENSMUSG00000021385.11	novel	4421	13	NA	NA	42409	188194	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	125	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGAGCGCGCGCGCTCCTG	8350	False	NA	NA	False	NA	NA	NA	49617498	49806243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_49617814_49618170_49618263_49619154_49619235_49780730_49780823_49803596_49803776_49806058
ENSMUSG00000021385.11_49617499_49806243_3	chr13	+	1037	7	NIC	ENSMUSG00000021385.11	novel	4421	13	NA	NA	42409	188194	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	180	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGAGCGCGCGCGCTCCTG	8350	False	NA	NA	False	NA	NA	NA	49617498	49806243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49794701_49794791_49803596_49803776_49806058
ENSMUSG00000021385.11_49617499_49806243_4	chr13	+	1037	7	NIC	ENSMUSG00000021385.11	novel	4421	13	NA	NA	42409	188194	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	172	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGAGCGCGCGCGCTCCTG	8350	False	NA	NA	False	NA	NA	NA	49617498	49806243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49801041_49801131_49803596_49803776_49806058
ENSMUSG00000021385.11_49617499_49806243_5	chr13	+	1120	8	NNC	ENSMUSG00000021385.11	novel	4421	13	NA	NA	42409	188194	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1180	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGAGCGCGCGCGCTCCTG	8350	False	NA	NA	False	NA	NA	NA	49617498	49806243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_49617808_49618170_49618263_49619154_49619235_49780730_49780828_49794701_49794791_49801041_49801131_49803596_49803776_49806058
ENSMUSG00000021391.11_49617499_49806243_1	chr13	-	1119	8	NNC	ENSMUSG00000021391.11	novel	1144	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	70.2926825814024	1231	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAGTGCTTTGTACAGTT	NA	False	NA	-4	True	AATAAA	-21	NA	49806243	49617498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49794701_49794784_49801041_49801131_49803596_49803776_49806058
ENSMUSG00000021391.11_49617499_49806243_2	chr13	-	1118	8	NNC	ENSMUSG00000021391.11	novel	1144	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	70.3333172131393	1168	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAGTGCTTTGTACAGTT	NA	False	NA	-4	True	AATAAA	-21	NA	49806243	49617498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49794701_49794791_49801041_49801123_49803596_49803776_49806058
ENSMUSG00000021392.9_49826139_49832455_1	chr13	+	1030	5	ISM	ENSMUSG00000021392.9	ENSMUST00000021824.8	4242	18	19313	36	2961	0	3prime_fragment	FALSE	canonical	3	121	junction_1	30.9222816105151	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTTTATTCCTAATTA	7546	False	NA	7	True	AATAAA	-13	NA	49826138	49832455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_49826300_49828861_49828989_49829797_49829866_49830230_49830311_49831861
ENSMUSG00000021395.12_51254916_51303258_1	chr13	+	1110	6	FSM	ENSMUSG00000021395.12	ENSMUST00000095797.6	4434	6	0	3324	0	-3272	multi-exon	FALSE	canonical	3	703	junction_1	64.2227374066226	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGATTGCTTTCCAGTT	NA	False	NA	NA	False	ATTAAA	-22	NA	51254915	51303258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_51255027_51277123_51277325_51281960_51282010_51293392_51293647_51298337_51298572_51302997
ENSMUSG00000021395.12_51254916_51304112_1	chr13	+	1964	6	FSM	ENSMUSG00000021395.12	ENSMUST00000095797.6	4434	6	0	2470	0	-2418	multi-exon	FALSE	canonical	3	703	junction_1	64.2227374066226	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGTCCATTTGTACACA	NA	False	NA	20	True	AATAAA	-20	NA	51254915	51304112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_51255027_51277123_51277325_51281960_51282010_51293392_51293647_51298337_51298572_51302997
ENSMUSG00000021395.12_51298406_51303258_1	chr13	+	427	2	ISM	ENSMUSG00000021395.12	ENSMUST00000223152.2	4085	4	10051	3272	10051	-3272	3prime_fragment	FALSE	canonical	3	720	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGATTGCTTTCCAGTT	NA	False	NA	NA	False	ATTAAA	-22	NA	51298405	51303258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_51298572_51302997
ENSMUSG00000021396.6_51325259_51329224_1	chr13	+	966	2	FSM	ENSMUSG00000021396.6	ENSMUST00000021828.6	1167	2	201	0	164	0	multi-exon	FALSE	canonical	1	2	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTCTGATGTCCTTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	51325258	51329224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_51325661_51328660
ENSMUSG00000021403.4_33211399_33224564_1	chr13	+	1950	7	FSM	ENSMUSG00000021403.4	ENSMUST00000006392.3	3253	7	0	1303	0	-1303	multi-exon	FALSE	canonical	3	32	junction_4	6.66874967458085	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGACATGCCATGGTCT	NA	False	NA	5	True	AATAAA	-18	NA	33211398	33224564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_33211584_33213434_33213613_33216898_33217037_33217509_33217628_33219498_33219642_33221954_33222111_33223532
ENSMUSG00000021403.4_33211534_33224564_1	chr13	+	1815	7	FSM	ENSMUSG00000021403.4	ENSMUST00000006392.3	3253	7	135	1303	0	-1303	multi-exon	FALSE	canonical	3	32	junction_4	6.66874967458085	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGACATGCCATGGTCT	NA	False	NA	5	True	AATAAA	-18	NA	33211533	33224564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_33211584_33213434_33213613_33216898_33217037_33217509_33217628_33219498_33219642_33221954_33222111_33223532
ENSMUSG00000021415.14_35130768_35147793_1	chr13	+	1176	9	Genic_Genomic	ENSMUSG00000021415.14	novel	1045	5	NA	NA	22376	7935	multi-exon	FALSE	non_canonical	0	0	junction_1	0	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGACAAACAGAGCCGAGA	NA	False	NA	NA	False	NA	NA	NA	35130767	35147793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_35131074_35132054_35132199_35132727_35132818_35136963_35137085_35138064_35138165_35140843_35140914_35143856_35144046_35144383_35144483_35147736
ENSMUSG00000021418.16_36080687_36090342_1	chr13	-	1127	8	NNC	ENSMUSG00000021418.16	novel	4380	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_5	198.227657206639	327	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTTGCTTGTTTGTTGTC	NA	False	NA	-6	True	CATAAA	-23	NA	36090342	36080686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086071_36087670_36087740_36088401_36088547_36090186
ENSMUSG00000021418.16_36080687_36090342_2	chr13	-	1142	8	NNC	ENSMUSG00000021418.16	novel	4380	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_3	191.868577470122	3013	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTTGCTTGTTTGTTGTC	NA	False	NA	-6	True	CATAAA	-23	NA	36090342	36080686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_36080909_36082547_36082683_36082797_36082991_36085288_36085415_36085995_36086092_36087670_36087740_36088401_36088547_36090186
ENSMUSG00000021418.16_36080687_36090342_3	chr13	-	1148	8	FSM	ENSMUSG00000021418.16	ENSMUST00000171686.9	4380	8	0	3232	0	0	multi-exon	FALSE	canonical	3	464	junction_5	45.6195446836425	3672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTTGCTTGTTTGTTGTC	NA	False	NA	-6	True	CATAAA	-23	NA	36090342	36080686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36087670_36087740_36088401_36088547_36090186
ENSMUSG00000021420.14_36301855_36721567_1	chr13	+	1665	7	FSM	ENSMUSG00000021420.14	ENSMUST00000021857.13	2125	7	460	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	25.2300526268883	734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACATAGCATTTGTCTTT	NA	False	NA	9	True	AATAAA	-20	NA	36301854	36721567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_36301989_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
ENSMUSG00000021420.14_36301855_36721567_2	chr13	+	1724	8	NNC	ENSMUSG00000021420.14	novel	2125	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	104.310955849345	728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACATAGCATTTGTCTTT	NA	False	NA	9	True	AATAAA	-20	NA	36301854	36721567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_36301989_36320335_36320395_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
ENSMUSG00000021420.14_36404301_36721567_1	chr13	+	1072	6	NNC	ENSMUSG00000021420.14	novel	726	5	NA	NA	-11804	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	93.2660710011953	173	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACATAGCATTTGTCTTT	NA	False	NA	9	True	AATAAA	-20	NA	36404300	36721567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_36404475_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
ENSMUSG00000021427.11_38161989_38178133_1	chr13	-	2661	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	60	6612	0	-6612	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	1594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATAGTGTTTAACTAAAAA	5906	False	NA	-1	True	ATTAAA	-14	NA	38178133	38161988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
ENSMUSG00000021427.11_38162171_38178133_1	chr13	-	2479	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	60	6794	0	-6794	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	1589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGCTGTATAATCTGTTT	5906	False	NA	-43	True	AATATA	-18	NA	38178133	38162170	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
ENSMUSG00000021427.11_38163471_38178133_1	chr13	-	1170	8	NNC	ENSMUSG00000021427.11	novel	1825	10	NA	NA	0	-8094	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	348.635064448867	190	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTGAGCAGTTGTCTT	5906	False	NA	36	True	ATTAAA	-16	NA	38178133	38163470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176077_38177980
ENSMUSG00000021427.11_38163471_38178133_2	chr13	-	1179	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	60	8094	0	-8094	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTGAGCAGTTGTCTT	5906	False	NA	36	True	ATTAAA	-16	NA	38178133	38163470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
ENSMUSG00000021427.11_38163471_38178133_3	chr13	-	1173	8	NNC	ENSMUSG00000021427.11	novel	1825	10	NA	NA	0	-8094	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	347.400844758293	173	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTGAGCAGTTGTCTT	5906	False	NA	36	True	ATTAAA	-16	NA	38178133	38163470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_38163777_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
ENSMUSG00000021427.11_38163471_38178193_1	chr13	-	1239	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	0	8094	0	-8094	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTGAGCAGTTGTCTT	5846	False	NA	36	True	ATTAAA	-16	NA	38178193	38163470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
ENSMUSG00000021428.10_38221221_38229121_1	chr13	+	1817	4	ISM	ENSMUSG00000021428.10	ENSMUST00000226006.2	2307	5	-37	2456	0	75	5prime_fragment	FALSE	canonical	3	187	junction_3	20.3960780543711	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTGTCTCTGAA	4738	False	NA	NA	False	NA	NA	NA	38221220	38229121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884
ENSMUSG00000021431.16_38388921_38399573_1	chr13	+	1427	5	ISM	ENSMUSG00000021431.16	ENSMUST00000223557.2	871	6	7	-167	0	167	intron_retention	FALSE	canonical	3	102	junction_4	60.6356949329353	800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38388920	38399573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38398580
ENSMUSG00000021431.16_38388921_38399573_2	chr13	+	1063	6	NNC	ENSMUSG00000021431.16	novel	871	6	NA	NA	0	167	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	98.3959348753799	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	38388920	38399573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38398580_38398676_38399039
ENSMUSG00000021431.16_38388921_38410956_1	chr13	+	1092	9	NNC	ENSMUSG00000021431.16	novel	1785	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	90.005208182638	769	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTGCATAGGGGAAAATG	NA	False	NA	-64	True	AATAAA	-21	NA	38388920	38410956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38400300_38400490_38401349_38401472_38404663_38404753_38405210_38405370_38410857
ENSMUSG00000021431.16_38388921_38411028_1	chr13	+	1362	11	NNC	ENSMUSG00000021431.16	novel	1785	9	NA	NA	0	72	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	100.210578283932	967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAAAATTGTACACTACAC	NA	False	NA	8	True	AATAAA	-16	NA	38388920	38411028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38398580_38398644_38399033_38399157_38400300_38400490_38401349_38401476_38404663_38404753_38405210_38405370_38410849
ENSMUSG00000021458.18_63387846_63447486_1	chr13	+	1364	5	ISM	ENSMUSG00000021458.18	ENSMUST00000220884.2	772	7	-76	1560	0	0	5prime_fragment	FALSE	canonical	3	67	junction_1	29.0387671914632	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGTAATGTTTATTT	NA	False	NA	NA	False	ATTAAA	-35	NA	63387845	63447486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_63387970_63388070_63388146_63429955_63430073_63444671_63444759_63446525
ENSMUSG00000021458.18_63387846_63450688_1	chr13	+	1644	6	FSM	ENSMUSG00000021458.18	ENSMUST00000222929.2	1055	6	3	-592	0	3	multi-exon	FALSE	canonical	3	67	junction_1	29.9933325924279	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCACTCTGGCCTTGCTT	NA	False	NA	29	True	AATAAA	-29	NA	63387845	63450688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_63387970_63388070_63388146_63429955_63430073_63444671_63444759_63446525_63446671_63449592
ENSMUSG00000021458.18_63420630_63450098_1	chr13	+	1389	5	ISM	ENSMUSG00000021458.18	ENSMUST00000220885.2	894	6	315	-241	0	0	3prime_fragment	FALSE	canonical	3	17	junction_1	48.7769156466458	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGTTTGCTTCTGAATT	NA	False	NA	5	True	AATAAA	-19	NA	63420629	63450098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_63421164_63429955_63430073_63444671_63444759_63446525_63446671_63449592
ENSMUSG00000021460.18_52989155_53083545_1	chr13	-	1168	10	FSM	ENSMUSG00000021460.18	ENSMUST00000021913.16	1320	10	152	0	-51	0	multi-exon	FALSE	canonical	3	269	junction_3	77.7090172246741	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGTTATACCAAATGT	NA	False	NA	-14	True	AATAAA	-22	NA	53083545	52989154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53041276_53041334_53043138_53043232_53052685_53052773_53073036_53073125_53073234_53073303_53083490
ENSMUSG00000021460.18_52989155_53083545_3	chr13	-	1234	10	NIC	ENSMUSG00000021460.18	novel	1320	10	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_9	115.424605289223	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGTTATACCAAATGT	NA	False	NA	-14	True	AATAAA	-22	NA	53083545	52989154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53041276_53041334_53043138_53043232_53052685_53052773_53073036_53073125_53073234_53073303_53083424
ENSMUSG00000021460.18_53066885_53083545_1	chr13	-	424	4	FSM	ENSMUSG00000021460.18	ENSMUST00000110031.4	3235	4	172	2639	-51	0	multi-exon	FALSE	canonical	3	117	junction_1	164.004742478855	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTCGGTTCCCAGTGTGG	NA	False	NA	-10	True	AATAAA	-15	NA	53083545	53066884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_53067098_53073036_53073125_53073234_53073303_53083490
ENSMUSG00000021460.18_53066885_53083697_1	chr13	-	576	4	FSM	ENSMUSG00000021460.18	ENSMUST00000110031.4	3235	4	20	2639	0	0	multi-exon	FALSE	canonical	3	117	junction_1	164.004742478855	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTCGGTTCCCAGTGTGG	NA	False	NA	-10	True	AATAAA	-15	NA	53083697	53066884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_53067098_53073036_53073125_53073234_53073303_53083490
ENSMUSG00000021464.16_53271193_53314476_1	chr13	-	1182	7	NNC	ENSMUSG00000021464.16	novel	3730	9	NA	NA	115218	-7840	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_6	40.1787671952903	89	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGACGTACCCCCGTG	NA	False	NA	NA	False	AATAAA	-16	NA	53314476	53271192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_53271417_53272726_53273042_53275699_53275828_53284952_53284984_53285785_53286074_53300669_53300748_53314358
ENSMUSG00000021474.10_54225888_54260797_1	chr13	+	1285	12	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	0	-1564	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_6	341.21576509169	2865	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACCCTTCTGGTAGATT	NA	False	NA	NA	False	NA	NA	NA	54225887	54260797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247571_54247638_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
ENSMUSG00000021474.10_54225888_54260797_2	chr13	+	1214	11	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	0	-1564	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	278.894047982383	2851	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACCCTTCTGGTAGATT	NA	False	NA	NA	False	NA	NA	NA	54225887	54260797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_54225952_54239467_54239643_54242912_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
ENSMUSG00000021474.10_54225888_54260797_3	chr13	+	1219	11	FSM	ENSMUSG00000021474.10	ENSMUST00000021930.10	2783	11	0	1564	0	-1564	multi-exon	FALSE	canonical	3	779	junction_1	55.358919787149	2922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACCCTTCTGGTAGATT	NA	False	NA	NA	False	NA	NA	NA	54225887	54260797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
ENSMUSG00000021477.10_64511610_64518120_1	chr13	-	1383	8	NNC	ENSMUSG00000021477.10	novel	1971	8	NA	NA	0	-582	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	475.148011311277	23010	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGACTTCAGTGTGTAA	NA	False	NA	-6	True	AATAAA	-22	NA	64518120	64511609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514901_64515673_64515821_64515929_64516053_64516841_64516979_64518049
ENSMUSG00000021477.10_64511610_64518120_2	chr13	-	1389	8	FSM	ENSMUSG00000021477.10	ENSMUST00000021933.8	1971	8	0	582	0	-582	multi-exon	FALSE	canonical	3	1187	junction_3	95.3616103822386	23216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGACTTCAGTGTGTAA	NA	False	NA	-6	True	AATAAA	-22	NA	64518120	64511609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
ENSMUSG00000021484.9_55493208_55510424_1	chr13	-	2581	8	FSM	ENSMUSG00000021484.9	ENSMUST00000021940.8	4315	8	172	1562	0	1198	multi-exon	FALSE	canonical	3	2192	junction_4	110.260729960528	6765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCGGCTGATGGTCTCTG	3011	False	NA	1	True	AATAAA	-18	NA	55510424	55493207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_55494851_55496127_55496248_55498968_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55509933_55510053_55510200
ENSMUSG00000021484.9_55494558_55510424_1	chr13	-	1226	8	NNC	ENSMUSG00000021484.9	novel	4315	8	NA	NA	0	-152	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	853.44327788754	1122	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTTCTTGCCCAGCTG	3011	False	NA	-6	True	ATTAAA	-14	NA	55510424	55494557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_55494851_55496127_55496248_55498973_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55509933_55510053_55510200
ENSMUSG00000021484.9_55494558_55510424_2	chr13	-	1231	8	FSM	ENSMUSG00000021484.9	ENSMUST00000021940.8	4315	8	172	2912	0	-152	multi-exon	FALSE	canonical	3	2192	junction_4	110.260729960528	6457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTTCTTGCCCAGCTG	3011	False	NA	-6	True	ATTAAA	-14	NA	55510424	55494557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_55494851_55496127_55496248_55498968_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55509933_55510053_55510200
ENSMUSG00000021484.9_55494558_55510612_1	chr13	-	1419	8	FSM	ENSMUSG00000021484.9	ENSMUST00000021940.8	4315	8	-16	2912	-16	-152	multi-exon	FALSE	canonical	3	2192	junction_4	110.260729960528	6948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTTCTTGCCCAGCTG	2823	False	NA	-6	True	ATTAAA	-14	NA	55510612	55494557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_55494851_55496127_55496248_55498968_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55509933_55510053_55510200
ENSMUSG00000021485.15_55469832_55473085_1	chr13	-	1097	6	NNC	ENSMUSG00000021485.15	novel	1327	6	NA	NA	4080	3149	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	3062	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCGGATGCATAGGATCG	9708	False	NA	NA	False	NA	NA	NA	55473085	55469831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_55470095_55470665_55470892_55472143_55472258_55472339_55472419_55472642_55472879_55472906
ENSMUSG00000021485.15_55469832_55473085_10	chr13	-	1082	4	NNC	ENSMUSG00000021485.15	novel	1327	6	NA	NA	4080	3149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCGGATGCATAGGATCG	9708	False	NA	NA	False	NA	NA	NA	55473085	55469831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_55470095_55470665_55470892_55472143_55472258_55472606
ENSMUSG00000021485.15_55469832_55473085_2	chr13	-	1120	5	NNC	ENSMUSG00000021485.15	novel	1327	6	NA	NA	4080	3149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	14387	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCGGATGCATAGGATCG	9708	False	NA	NA	False	NA	NA	NA	55473085	55469831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_55470095_55470665_55470892_55472143_55472258_55472339_55472419_55472647
ENSMUSG00000021485.15_55469832_55473085_3	chr13	-	1004	6	NNC	ENSMUSG00000021485.15	novel	1327	6	NA	NA	4080	3149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCGGATGCATAGGATCG	9708	False	NA	NA	False	NA	NA	NA	55473085	55469831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_55470095_55470665_55470892_55472143_55472258_55472339_55472419_55472642_55472811_55472931
ENSMUSG00000021485.15_55469832_55473085_4	chr13	-	1031	6	NNC	ENSMUSG00000021485.15	novel	1327	6	NA	NA	4080	3149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCGGATGCATAGGATCG	9708	False	NA	NA	False	NA	NA	NA	55473085	55469831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_55470095_55470665_55470892_55472143_55472258_55472339_55472419_55472642_55472811_55472904
ENSMUSG00000021485.15_55469832_55473085_5	chr13	-	1116	5	NNC	ENSMUSG00000021485.15	novel	1327	6	NA	NA	4080	3149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5244	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCGGATGCATAGGATCG	9708	False	NA	NA	False	NA	NA	NA	55473085	55469831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_55470095_55470665_55470892_55472152_55472258_55472339_55472419_55472642
ENSMUSG00000021485.15_55469832_55473085_6	chr13	-	1100	5	NNC	ENSMUSG00000021485.15	novel	1327	6	NA	NA	4080	3149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1742	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCGGATGCATAGGATCG	9708	False	NA	NA	False	NA	NA	NA	55473085	55469831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_55470095_55470665_55470892_55472143_55472240_55472346_55472419_55472642
ENSMUSG00000021485.15_55469832_55473085_7	chr13	-	1081	5	NNC	ENSMUSG00000021485.15	novel	1327	6	NA	NA	4080	3149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	586	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCGGATGCATAGGATCG	9708	False	NA	NA	False	NA	NA	NA	55473085	55469831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_55470095_55470665_55470892_55472187_55472258_55472339_55472419_55472642
ENSMUSG00000021485.15_55469832_55473085_8	chr13	-	1128	5	NNC	ENSMUSG00000021485.15	novel	1327	6	NA	NA	4080	3149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCGGATGCATAGGATCG	9708	False	NA	NA	False	NA	NA	NA	55473085	55469831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_55470077_55470644_55470892_55472143_55472258_55472339_55472419_55472642
ENSMUSG00000021485.15_55469832_55473085_9	chr13	-	1044	5	NNC	ENSMUSG00000021485.15	novel	1327	6	NA	NA	4080	3149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	531	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCGGATGCATAGGATCG	9708	False	NA	NA	False	NA	NA	NA	55473085	55469831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_55470095_55470665_55470820_55472152_55472258_55472339_55472419_55472642
ENSMUSG00000021485.15_55473300_55477546_1	chr13	-	953	5	NIC	ENSMUSG00000021485.15	novel	1327	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_3	39.2006058626649	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTAAGTTCCTGTCCAT	6180	False	NA	-8	True	ATTAAA	-7	NA	55477546	55473299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_55473712_55473825_55474010_55476182_55476298_55477081_55477188_55477410
ENSMUSG00000021486.8_55469832_55472838_1	chr13	+	878	5	FSM	ENSMUSG00000021486.8	ENSMUST00000021942.8	2644	5	1519	247	0	-244	multi-exon	FALSE	canonical	3	1299	junction_2	62.1248742453456	870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCTCTGCTGTCTGGGG	5553	False	NA	NA	False	ATTAAA	-13	NA	55469831	55472838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_55470095_55470665_55470892_55472143_55472258_55472339_55472419_55472642
ENSMUSG00000021486.8_55469832_55473085_1	chr13	+	1125	5	FSM	ENSMUSG00000021486.8	ENSMUST00000021942.8	2644	5	1519	0	0	0	multi-exon	FALSE	canonical	3	1299	junction_2	62.1248742453456	18677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGAGTCAGATAGCTT	5553	False	NA	18	True	NA	NA	NA	55469831	55473085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_55470095_55470665_55470892_55472143_55472258_55472339_55472419_55472642
ENSMUSG00000021488.9_55359632_55388662_1	chr13	+	846	6	NNC	ENSMUSG00000021488.9	novel	1001	6	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	108.536445491825	333	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGTCTTTTTTTTCCC	NA	False	NA	NA	False	AATACA	-17	NA	55359631	55388662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_55359657_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
ENSMUSG00000021493.16_55654587_55661251_2	chr13	-	886	7	NIC	ENSMUSG00000021493.16	novel	1006	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_3	53.4716955241016	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTTGCCTCTGTCTCCC	NA	False	NA	-3	True	AATAAA	-16	NA	55661251	55654586	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_55654937_55655142_55655180_55655300_55655438_55656592_55656624_55656704_55656857_55660124_55660232_55661179
ENSMUSG00000021494.10_55678223_55684336_1	chr13	-	2070	17	FSM	ENSMUSG00000021494.10	ENSMUST00000021956.9	2205	17	135	0	-2	0	multi-exon	FALSE	canonical	3	642	junction_9	44.9861089671023	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTCTCTCACCCACCTG	NA	False	NA	1	True	ATTAAA	-27	NA	55684336	55678222	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
ENSMUSG00000021497.11_55862463_55874040_1	chr13	+	1521	5	NNC	ENSMUSG00000021497.11	novel	1527	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	106.534912118047	1967	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAAGTGGTTTCGCTTGT	NA	False	NA	18	True	AATAAA	-14	NA	55862462	55874040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_55862658_55865610_55866081_55869391_55869556_55872320_55872452_55873479
ENSMUSG00000021497.11_55862463_55874040_2	chr13	+	1521	5	NNC	ENSMUSG00000021497.11	novel	1527	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	108.617160246436	1959	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAAGTGGTTTCGCTTGT	NA	False	NA	18	True	AATAAA	-14	NA	55862462	55874040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_55862658_55865604_55866081_55869391_55869556_55872320_55872452_55873485
ENSMUSG00000021500.18_55823854_55826761_1	chr13	+	458	4	ISM	ENSMUSG00000021500.18	ENSMUST00000223736.2	5612	24	40990	2308	6277	-2308	3prime_fragment	FALSE	canonical	3	370	junction_3	6.37704215656966	152	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTCGTCTGTAAGTACTA	NA	False	NA	NA	False	AATACA	-21	NA	55823853	55826761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_55823928_55824582_55824728_55825333_55825408_55826596
ENSMUSG00000021500.18_55823854_55826928_1	chr13	+	625	4	ISM	ENSMUSG00000021500.18	ENSMUST00000223736.2	5612	24	40990	2141	6277	-2141	3prime_fragment	FALSE	canonical	3	370	junction_3	6.37704215656966	682	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCACTGACCTGTCCTTT	NA	False	NA	8	True	AATAAA	-17	NA	55823853	55826928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_55823928_55824582_55824728_55825333_55825408_55826596
ENSMUSG00000021500.18_55823854_55826928_2	chr13	+	621	4	NNC	ENSMUSG00000021500.18	novel	5664	22	NA	NA	6277	-2141	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	177.811385712189	161	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCACTGACCTGTCCTTT	NA	False	NA	8	True	AATAAA	-17	NA	55823853	55826928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_55823932_55824590_55824728_55825333_55825408_55826596
ENSMUSG00000021500.18_55823854_55827077_1	chr13	+	774	4	ISM	ENSMUSG00000021500.18	ENSMUST00000223736.2	5612	24	40990	1992	6277	-1992	3prime_fragment	FALSE	canonical	3	370	junction_3	6.37704215656966	1083	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCTCAGAGTTTTTATTT	NA	False	NA	15	True	NA	NA	NA	55823853	55827077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_55823928_55824582_55824728_55825333_55825408_55826596
ENSMUSG00000021509.6_56586168_56619720_1	chr13	+	1820	8	NNC	ENSMUSG00000021509.6	novel	3374	8	NA	NA	0	-2332	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_7	4.23300925429402	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATGTGTTTTTGCGTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	56586167	56619720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_56586349_56590601_56590646_56596810_56596883_56598833_56599093_56611315_56611559_56612767_56612902_56618162_56618294_56618964
ENSMUSG00000021514.19_65426666_65452035_1	chr13	+	843	5	NIC	ENSMUSG00000021514.19	novel	1580	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	10	junction_4	17.9234483289349	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGCTGTGATAGCTG	NA	False	NA	26	True	AATAAA	-19	NA	65426665	65452035	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_65426802_65427074_65427155_65428075_65428203_65432734_65432831_65451631
ENSMUSG00000021518.5_67055032_67081105_1	chr13	+	1387	8	Fusion	ENSMUSG00000021518.5_ENSMUSG00000074826.11	novel	2067	3	NA	NA	1553	23805	multi-exon	FALSE	non_canonical	0	0	junction_1	0	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGATACGGTGCACCGTAG	NA	False	NA	NA	False	NA	NA	NA	67055031	67081105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr13_+_67055248_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67080998
ENSMUSG00000021518.5_67060182_67081105_2	chr13	+	1093	7	NIC	ENSMUSG00000021518.5	novel	3424	13	NA	NA	-20712	-30327	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGATACGGTGCACCGTAG	NA	False	NA	NA	False	NA	NA	NA	67060181	67081105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67080998
ENSMUSG00000021518.5_67081512_67145542_1	chr13	+	1883	13	FSM	ENSMUSG00000021518.5	ENSMUST00000021990.4	3424	13	618	923	0	273	multi-exon	FALSE	canonical	3	153	junction_7	19.2476549798209	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCTGCCTGTCCATTTG	8476	False	NA	38	True	AATGAA	-24	NA	67081511	67145542	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_67081751_67093340_67093433_67101583_67101629_67104445_67104571_67111376_67111536_67114453_67114606_67120557_67120700_67122508_67122622_67124809_67124876_67135817_67135918_67142016_67142086_67143410_67143481_67145031
ENSMUSG00000021518.5_67081512_67146073_1	chr13	+	2414	13	FSM	ENSMUSG00000021518.5	ENSMUST00000021990.4	3424	13	618	392	0	-117	multi-exon	FALSE	canonical	3	153	junction_7	19.2476549798209	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCTTTGTTAGAATGAT	8476	False	NA	29	True	ATTAAA	-15	NA	67081511	67146073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_67081751_67093340_67093433_67101583_67101629_67104445_67104571_67111376_67111536_67114453_67114606_67120557_67120700_67122508_67122622_67124809_67124876_67135817_67135918_67142016_67142086_67143410_67143481_67145031
ENSMUSG00000021519.12_67060182_67081105_1	chr13	-	1427	8	NIC	ENSMUSG00000021519.12	novel	1479	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_4	109.238178270405	1617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTTTCAATATTA	424	False	NA	NA	False	AATAAA	-18	NA	67081105	67060181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065233_67070819_67071010_67076233_67076387_67077948_67078288_67080998
ENSMUSG00000021519.12_67060182_67081105_2	chr13	-	1284	7	NIC	ENSMUSG00000021519.12	novel	1479	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	24	junction_3	122.900253141408	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTTTCAATATTA	424	False	NA	NA	False	AATAAA	-18	NA	67081105	67060181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_67060443_67062690_67062853_67064676_67064749_67070819_67071010_67076233_67076387_67077948_67078288_67080998
ENSMUSG00000021519.12_67060182_67081105_3	chr13	-	1432	8	NNC	ENSMUSG00000021519.12	novel	1479	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	125.19209729248	1672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTTTCAATATTA	424	False	NA	NA	False	AATAAA	-18	NA	67081105	67060181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065233_67070814_67071010_67076233_67076387_67077948_67078288_67080998
ENSMUSG00000021519.12_67060301_67081105_1	chr13	-	1313	8	FSM	ENSMUSG00000021519.12	ENSMUST00000021991.11	1479	8	47	119	0	0	multi-exon	FALSE	canonical	3	328	junction_6	16.4005973012185	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTGCCAAAGCTTCACTA	424	False	NA	NA	False	GATAAA	-14	NA	67081105	67060300	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67080998
ENSMUSG00000021532.12_68730382_68740401_1	chr13	+	2264	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	45.0175891550551	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAATTGTCCGTCTTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	68730381	68740401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_68730384_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
ENSMUSG00000021532.12_68730382_68740401_2	chr13	+	886	6	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	59.4763818670907	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAATTGTCCGTCTTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	68730381	68740401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_68730470_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
ENSMUSG00000021532.12_68730382_68740401_3	chr13	+	2598	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	39.5010548382361	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAATTGTCCGTCTTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	68730381	68740401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_68730718_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
ENSMUSG00000021537.10_81931397_81945153_1	chr13	+	904	5	FSM	ENSMUSG00000021537.10	ENSMUST00000022009.10	1226	5	201	121	0	118	multi-exon	FALSE	canonical	3	1314	junction_2	32.392128673491	14702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAATGTTTGGTAAATTT	NA	False	NA	8	True	AATAAA	-19	NA	81931396	81945153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_81931477_81932759_81932896_81934961_81935077_81940074_81940267_81944772
ENSMUSG00000021537.10_81931397_81945274_1	chr13	+	1025	5	FSM	ENSMUSG00000021537.10	ENSMUST00000022009.10	1226	5	201	0	0	0	multi-exon	FALSE	canonical	3	1314	junction_2	32.392128673491	16012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAATAGTCTGGAACATT	NA	False	NA	NA	False	AATAAA	-15	NA	81931396	81945274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_81931477_81932759_81932896_81934961_81935077_81940074_81940267_81944772
ENSMUSG00000021537.10_81931950_81945038_1	chr13	+	742	5	NIC	ENSMUSG00000021537.10	novel	598	5	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	582.813166889699	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTGGTGTATGTTATTT	NA	False	NA	24	True	TATAAA	-17	NA	81931949	81945038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_81931983_81932759_81932896_81934961_81935077_81940074_81940267_81944772
ENSMUSG00000021546.19_58539053_58549933_1	chr13	-	2622	15	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2380.72947254168	2847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	5148	False	NA	-23	True	AATAAA	-15	NA	58549933	58539052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ENSMUSG00000021546.19_58539053_58550279_1	chr13	-	2655	14	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2494.09319471132	2393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	4802	False	NA	-23	True	AATAAA	-15	NA	58550279	58539052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000021546.19_58539053_58550330_1	chr13	-	2749	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2558.70782618804	3515	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	4751	False	NA	-23	True	AATAAA	-15	NA	58550330	58539052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542292_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000021546.19_58539764_58549384_1	chr13	-	1951	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2561.53390449503	1684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	5697	False	NA	-5	True	AATAAA	-14	NA	58549384	58539763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549348
ENSMUSG00000021546.19_58539764_58549933_1	chr13	-	1911	15	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2380.72947254168	2048	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	5148	False	NA	-5	True	AATAAA	-14	NA	58549933	58539763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ENSMUSG00000021546.19_58539764_58549933_2	chr13	-	1960	15	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2351.55163386533	2384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	5148	False	NA	-5	True	AATAAA	-14	NA	58549933	58539763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541884_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ENSMUSG00000021546.19_58539764_58549933_3	chr13	-	1899	14	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2859.79353746439	1729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	5148	False	NA	-5	True	AATAAA	-14	NA	58549933	58539763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ENSMUSG00000021546.19_58539764_58550279_1	chr13	-	1944	14	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2494.09319471132	1633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4802	False	NA	-5	True	AATAAA	-14	NA	58550279	58539763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000021546.19_58539764_58550279_2	chr13	-	1856	14	NNC	ENSMUSG00000021546.19	novel	2653	15	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2619.59134985529	1715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4802	False	NA	-5	True	AATAAA	-14	NA	58550279	58539763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000021546.19_58539764_58550279_3	chr13	-	1987	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2558.70782618804	1829	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4802	False	NA	-5	True	AATAAA	-14	NA	58550279	58539763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542292_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000021546.19_58539764_58550330_1	chr13	-	1967	14	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2590.86606113584	1790	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4751	False	NA	-5	True	AATAAA	-14	NA	58550330	58539763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000021546.19_58539764_58550330_2	chr13	-	1978	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2586.84150252459	2129	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4751	False	NA	-5	True	AATAAA	-14	NA	58550330	58539763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542292_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000021546.19_58545466_58550330_1	chr13	-	509	5	ISM	ENSMUSG00000021546.19	ENSMUST00000224182.2	2754	16	0	6417	0	-615	5prime_fragment	FALSE	canonical	3	6496	junction_4	601.852349002644	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTTTTTCAAGTTTCTG	4751	False	NA	NA	False	ATTAAA	-21	NA	58550330	58545465	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000021548.11_85337554_85361029_1	chr13	+	1025	9	NIC	ENSMUSG00000021548.11	novel	2045	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	310.456921327259	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTGTGATTGTTTTA	NA	False	NA	15	True	ATTAAA	-22	NA	85337553	85361029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_85337772_85338872_85338996_85344370_85344445_85345649_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
ENSMUSG00000021548.11_85337554_85361029_2	chr13	+	1200	9	NNC	ENSMUSG00000021548.11	novel	2045	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_7	319.703671389617	913	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTGTGATTGTTTTA	NA	False	NA	15	True	ATTAAA	-22	NA	85337553	85361029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85357004_85359972_85360034_85360858
ENSMUSG00000021548.11_85337554_85361029_3	chr13	+	1205	9	FSM	ENSMUSG00000021548.11	ENSMUST00000022030.11	2045	9	27	813	0	0	multi-exon	FALSE	canonical	3	824	junction_5	83.2840583485219	2783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTGTGATTGTTTTA	NA	False	NA	15	True	ATTAAA	-22	NA	85337553	85361029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
ENSMUSG00000021548.11_85337554_85361029_4	chr13	+	1202	9	NNC	ENSMUSG00000021548.11	novel	2045	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	318.014912189664	1854	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTGTGATTGTTTTA	NA	False	NA	15	True	ATTAAA	-22	NA	85337553	85361029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_85337772_85338872_85339000_85344377_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
ENSMUSG00000021548.11_85337554_85361228_1	chr13	+	1404	9	FSM	ENSMUSG00000021548.11	ENSMUST00000022030.11	2045	9	27	614	0	0	multi-exon	FALSE	canonical	3	824	junction_5	83.2840583485219	2827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAACCTGAACA	NA	False	NA	NA	False	AATAAA	-32	NA	85337553	85361228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
ENSMUSG00000021550.7_58529496_58533039_1	chr13	-	1186	4	FSM	ENSMUSG00000021550.7	ENSMUST00000022032.7	3051	4	0	1865	0	-1865	multi-exon	TRUE	canonical	3	402	junction_2	21.2289111041209	426	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTGGTGCACGCCTTT	NA	False	NA	-17	True	TATAAA	-19	NA	58533039	58529495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_58529824_58530221_58530418_58531963_58532224_58532637
ENSMUSG00000021552.8_58381160_58391662_1	chr13	-	675	6	ISM	ENSMUSG00000021552.8	ENSMUST00000091579.6	1523	12	30340	0	103	0	3prime_fragment	FALSE	canonical	0	0	junction_5	66.2299026120377	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTGATCTTCACTGTC	9893	False	NA	2	True	AATAAA	-22	NA	58391662	58381159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_58381473_58384330_58384409_58384800_58384872_58386462_58386527_58389467_58389570_58391615
ENSMUSG00000021555.16_59733208_59734460_1	chr13	+	407	3	NNC	ENSMUSG00000021555.16	novel	779	10	NA	NA	0	-13144	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	328.5	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGGATGTTGGCGATTTTT	1309	False	NA	NA	False	TTTAAA	-1	NA	59733207	59734460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_59733274_59733966_59734096_59734248
ENSMUSG00000021555.16_59733208_59747651_1	chr13	+	446	4	NNC	ENSMUSG00000021555.16	novel	779	10	NA	NA	0	47	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	397.211390683712	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGCCTACCTGATTCTT	1309	False	NA	NA	False	AATAAA	-23	NA	59733207	59747651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_59733274_59733966_59734123_59745853_59745969_59747542
ENSMUSG00000021555.16_59733208_59749187_1	chr13	+	889	6	ISM	ENSMUSG00000021555.16	ENSMUST00000166923.9	779	10	0	7444	0	1110	5prime_fragment	FALSE	canonical	3	670	junction_1	88.4655865294522	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGTGGGCTTCTCTGCAG	1309	False	NA	NA	False	AGTAAA	-20	NA	59733207	59749187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717
ENSMUSG00000021555.16_59733208_59756201_1	chr13	+	941	9	ISM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	99	27535	0	-430	5prime_fragment	FALSE	canonical	3	649	junction_6	91.2269662709442	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTAAGTGTTCCTGGG	1309	False	NA	NA	False	AATACA	-21	NA	59733207	59756201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958
ENSMUSG00000021555.16_59733208_59756322_1	chr13	+	1062	9	ISM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	99	27414	0	-309	5prime_fragment	FALSE	canonical	3	649	junction_6	91.2269662709442	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAACTGCTAACTACTTG	1309	False	NA	NA	False	NA	NA	NA	59733207	59756322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958
ENSMUSG00000021555.16_59733208_59756401_1	chr13	+	1141	9	ISM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	99	27335	0	-230	5prime_fragment	FALSE	canonical	3	649	junction_6	91.2269662709442	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCAGCATAGCTTCTTCTC	1309	False	NA	NA	False	ATTAAA	-20	NA	59733207	59756401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958
ENSMUSG00000021555.16_59733208_59782600_1	chr13	+	2474	22	NIC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	0	34	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	170.857036683091	1462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAAGCTGCCCT	1309	False	NA	55	True	AATAAA	-17	NA	59733207	59782600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
ENSMUSG00000021555.16_59733208_59782600_2	chr13	+	2558	23	FSM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	99	1136	0	34	multi-exon	FALSE	canonical	3	649	junction_6	70.4314478267713	1503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAAGCTGCCCT	1309	False	NA	55	True	AATAAA	-17	NA	59733207	59782600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
ENSMUSG00000021555.16_59733234_59773943_1	chr13	+	2145	17	ISM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	125	9793	0	465	5prime_fragment	FALSE	canonical	3	649	junction_6	71.965025142426	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGGAGAAGAGAGAGTGC	1335	False	NA	NA	False	AATAAA	-31	NA	59733233	59773943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232
ENSMUSG00000021555.16_59733518_59747651_1	chr13	+	663	5	NNC	ENSMUSG00000021555.16	novel	1207	14	NA	NA	284	47	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	374.420468858208	432	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGCCTACCTGATTCTT	1619	False	NA	NA	False	AATAAA	-23	NA	59733517	59747651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_59733794_59733966_59734096_59743162_59743197_59745853_59745969_59747542
ENSMUSG00000021556.13_59782810_59823599_1	chr13	-	3558	10	FSM	ENSMUSG00000021556.13	ENSMUST00000022039.7	3954	10	26	370	-5	0	multi-exon	TRUE	canonical	3	421	junction_9	46.3947102135844	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTAGGGTTGTTTGGTGT	NA	False	NA	-5	True	AATAAA	-22	NA	59823599	59782809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59823540
ENSMUSG00000021556.13_59784998_59823599_1	chr13	-	1370	10	FSM	ENSMUSG00000021556.13	ENSMUST00000022039.7	3954	10	26	2558	-5	-2188	multi-exon	FALSE	canonical	3	421	junction_9	46.3947102135844	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGACCATCTCAGACAGTT	NA	False	NA	-16	True	AAGAAA	-7	NA	59823599	59784997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59823540
ENSMUSG00000021556.13_59784998_59827230_1	chr13	-	1484	10	NNC	ENSMUSG00000021556.13	novel	3954	10	NA	NA	-3605	-2188	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	157.741779931008	136	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGACCATCTCAGACAGTT	NA	False	NA	-16	True	AAGAAA	-7	NA	59827230	59784997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59827057
ENSMUSG00000021569.11_74060577_74085802_1	chr13	-	2173	13	NNC	ENSMUSG00000021569.11	novel	3399	13	NA	NA	101	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	139.652445576709	959	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTTATTTTTATTCTAA	NA	False	NA	-20	True	ATTAAA	-14	NA	74085802	74060576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_74061459_74062606_74062677_74063576_74063690_74066529_74066684_74068113_74068221_74068466_74068554_74069291_74069356_74076029_74076103_74077777_74077869_74078278_74078335_74080976_74081107_74084225_74084378_74085608
ENSMUSG00000021569.11_74060577_74085903_1	chr13	-	2302	13	NIC	ENSMUSG00000021569.11	novel	3399	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_6	137.026431959515	998	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTTATTTTTATTCTAA	NA	False	NA	-20	True	ATTAAA	-14	NA	74085903	74060576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_74061459_74062606_74062677_74063576_74063690_74066529_74066684_74068113_74068221_74068466_74068568_74069291_74069356_74076029_74076103_74077777_74077869_74078278_74078335_74080976_74081107_74084225_74084392_74085608
ENSMUSG00000021572.10_74185751_74210399_1	chr13	-	2490	12	FSM	ENSMUSG00000021572.10	ENSMUST00000036456.8	3641	12	19	1132	-19	0	multi-exon	FALSE	canonical	3	27	junction_5	28.6590098045136	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGGTTCACTCTTTTTG	NA	False	NA	1	True	NA	NA	NA	74210399	74185750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198178_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
ENSMUSG00000021577.15_74470851_74498358_1	chr13	-	2381	15	FSM	ENSMUSG00000021577.15	ENSMUST00000022062.8	2900	15	41	478	0	0	multi-exon	FALSE	canonical	3	1480	junction_7	176.694897308026	3341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGTGTGAAGTAGGGCA	NA	False	NA	20	True	NA	NA	NA	74498358	74470850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
ENSMUSG00000021578.18_74498470_74505551_1	chr13	+	1166	3	FSM	ENSMUSG00000021578.18	ENSMUST00000022063.14	9559	3	42	8351	0	384	multi-exon	FALSE	canonical	3	416	junction_2	9.5	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTCAGTTTTTACCT	4392	False	NA	NA	False	AATACA	-20	NA	74498469	74505551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_74498528_74500974_74501106_74504574
ENSMUSG00000021578.18_74498470_74505796_1	chr13	+	1280	2	FSM	ENSMUSG00000021578.18	ENSMUST00000223491.2	369	2	0	-911	0	629	multi-exon	FALSE	canonical	3	10	junction_1	0	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTGCTTTTTTTTTTT	4392	False	NA	31	True	TTTAAA	-6	NA	74498469	74505796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_74498528_74504574
ENSMUSG00000021578.18_74498470_74505796_2	chr13	+	1411	3	FSM	ENSMUSG00000021578.18	ENSMUST00000022063.14	9559	3	42	8106	0	629	multi-exon	FALSE	canonical	3	416	junction_2	9.5	1692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTGCTTTTTTTTTTT	4392	False	NA	31	True	TTTAAA	-6	NA	74498469	74505796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_74498528_74500974_74501106_74504574
ENSMUSG00000021578.18_74498470_74505959_1	chr13	+	1574	3	FSM	ENSMUSG00000021578.18	ENSMUST00000022063.14	9559	3	42	7943	0	792	multi-exon	FALSE	canonical	3	416	junction_2	9.5	1690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCGGGCATGGTATTACTT	4392	False	NA	NA	False	NA	NA	NA	74498469	74505959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_74498528_74500974_74501106_74504574
ENSMUSG00000021591.9_75988195_75998270_1	chr13	+	1137	3	FSM	ENSMUSG00000021591.9	ENSMUST00000022082.8	1345	3	208	0	0	0	multi-exon	FALSE	canonical	3	287	junction_1	16	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTTTGTCCGGTTCTGT	NA	False	NA	30	True	ATTAAA	-22	NA	75988194	75998270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_75988295_75995288_75995418_75997362
ENSMUSG00000021597.17_77251696_77283584_1	chr13	-	1028	8	ISM	ENSMUSG00000021597.17	ENSMUST00000151524.9	3747	21	8	60489	0	0	5prime_fragment	FALSE	canonical	3	56	junction_1	25.2352199620018	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGGAAAAAGAACAAAAAAGA	NA	False	NA	NA	False	GATAAA	-25	NA	77283584	77251695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_77251744_77252652_77252797_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
ENSMUSG00000021607.10_73476632_73480297_1	chr13	+	1159	3	FSM	ENSMUSG00000021607.10	ENSMUST00000221730.2	717	3	0	-442	0	0	multi-exon	FALSE	canonical	3	17	junction_1	303	4837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGAGTAGTAGTGTTCT	9283	False	NA	13	True	ATTAAA	-26	NA	73476631	73480297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_73476740_73478978_73479211_73479478
ENSMUSG00000021607.10_73479145_73479878_1	chr13	+	466	2	FSM	ENSMUSG00000021607.10	ENSMUST00000022098.10	923	2	38	419	0	23	multi-exon	FALSE	canonical	3	623	junction_1	0	2175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATGGGCCTTAGGGCTTT	NA	False	NA	20	True	AATAAA	-20	NA	73479144	73479878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_73479211_73479478
ENSMUSG00000021615.14_89997040_90237201_1	chr13	-	1501	8	NIC	ENSMUSG00000021615.14	novel	1540	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_7	49.108792180095	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAATGTTATTTAACTG	NA	False	NA	-7	True	AATAAA	-14	NA	90237201	89997039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_89997583_90089080_90089229_90139191_90139284_90140572_90140726_90149036_90149204_90210127_90210304_90219659_90219809_90237128
ENSMUSG00000021619.7_91083475_91365974_1	chr13	-	1675	8	NNC	ENSMUSG00000021619.7	novel	1583	8	NA	NA	6104	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	7.14856914468389	280	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTGACTACTGTTACTT	4984	False	NA	NA	False	ATTAAA	-15	NA	91365974	91083474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_91084365_91084705_91084822_91085411_91085510_91170688_91170787_91188968_91189108_91302335_91302432_91356436_91356553_91365852
ENSMUSG00000021619.7_91083988_91365974_1	chr13	-	1162	8	NNC	ENSMUSG00000021619.7	novel	1583	8	NA	NA	6104	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	7.14856914468389	220	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATGACACATCTTAAAT	4984	False	NA	NA	False	ATTAAA	-37	NA	91365974	91083987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_91084365_91084705_91084822_91085411_91085510_91170688_91170787_91188968_91189108_91302335_91302432_91356436_91356553_91365852
ENSMUSG00000021621.16_91944653_91955824_1	chr13	-	1471	5	NIC	ENSMUSG00000021621.16	novel	1541	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	56.3427013906859	1002	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTTTGTTGAACTGATC	NA	False	NA	NA	False	AATAAA	-15	NA	91955824	91944652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_91945374_91948729_91948823_91948984_91949136_91953869_91954280_91955728
ENSMUSG00000021635.15_100753672_100787510_1	chr13	-	2662	17	FSM	ENSMUSG00000021635.15	ENSMUST00000177848.3	2392	17	45	-315	0	0	multi-exon	FALSE	canonical	3	174	junction_16	17.1335516968899	260	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTTCTTCTTATCCTTT	NA	False	NA	-6	True	ATTAAA	-15	NA	100787510	100753671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787457
ENSMUSG00000021639.18_100596277_100629098_1	chr13	-	2002	17	NIC	ENSMUSG00000021639.18	novel	1630	18	NA	NA	-11	449	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	76.8251871133419	708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACTGTCTTCTTAAAACAA	NA	False	NA	NA	False	NA	NA	NA	100629098	100596276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_100596929_100605422_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
ENSMUSG00000021639.18_100605202_100628882_1	chr13	-	1569	16	ISM	ENSMUSG00000021639.18	ENSMUST00000145266.8	1630	18	-36	8476	0	114	5prime_fragment	FALSE	canonical	3	30	junction_15	76.4776219992925	1147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGTTATTTTGAGCCA	NA	False	NA	-10	True	ATTAAA	-16	NA	100628882	100605201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628750
ENSMUSG00000021639.18_100605202_100629098_1	chr13	-	1561	16	NNC	ENSMUSG00000021639.18	novel	1656	16	NA	NA	-11	114	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	83.7426215655246	1904	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGTTATTTTGAGCCA	NA	False	NA	-10	True	ATTAAA	-16	NA	100629098	100605201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619542_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
ENSMUSG00000021639.18_100605316_100628882_1	chr13	-	1455	16	ISM	ENSMUSG00000021639.18	ENSMUST00000145266.8	1630	18	-36	8590	0	0	5prime_fragment	FALSE	canonical	3	30	junction_15	76.4776219992925	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATGAAAGCACTTTGA	NA	False	NA	-19	True	AATAAA	-32	NA	100628882	100605315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628750
ENSMUSG00000021639.18_100605316_100629098_1	chr13	-	1447	16	NNC	ENSMUSG00000021639.18	novel	1656	16	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	83.7426215655246	1678	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATGAAAGCACTTTGA	NA	False	NA	-19	True	AATAAA	-32	NA	100629098	100605315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619542_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
ENSMUSG00000021660.15_98446404_98453278_1	chr13	-	894	6	FSM	ENSMUSG00000021660.15	ENSMUST00000022163.15	1091	6	197	0	197	0	multi-exon	FALSE	canonical	3	579	junction_5	2432.68485422999	5078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTTATCATTTTACTTA	NA	False	NA	-16	True	AATAAA	-37	NA	98453278	98446403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453132
ENSMUSG00000021660.15_98446450_98453484_1	chr13	-	813	6	FSM	ENSMUSG00000021660.15	ENSMUST00000152704.8	888	6	30	45	-9	0	multi-exon	FALSE	canonical	3	5972	junction_2	361.40138350593	13271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGAATAAAGTTTGGAAAG	NA	False	NA	-62	True	AATAAA	-13	NA	98453484	98446449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453373
ENSMUSG00000021661.17_98399647_98410426_1	chr13	+	1871	9	NNC	ENSMUSG00000021661.17	novel	1755	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	62.5658403204177	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399646	98410426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_98399985_98402658_98403054_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98409885
ENSMUSG00000021661.17_98399647_98410426_2	chr13	+	1858	9	FSM	ENSMUSG00000021661.17	ENSMUST00000022164.16	1755	9	-103	0	0	0	multi-exon	TRUE	canonical	3	142	junction_1	23.3559414282533	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399646	98410426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98409885
ENSMUSG00000021665.10_97312839_97334803_1	chr13	-	1832	14	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	645.602832824856	131	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGCTGCCCTGTGTGGAT	NA	False	NA	1	True	AATAAA	-27	NA	97334803	97312838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_97313087_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
ENSMUSG00000021665.10_97312839_97334803_2	chr13	-	1838	14	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	646.613920458087	416	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGCTGCCCTGTGTGGAT	NA	False	NA	1	True	AATAAA	-27	NA	97334803	97312838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320310_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
ENSMUSG00000021665.10_97312839_97334865_1	chr13	-	1759	13	NIC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_12	664.703750846111	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGCTGCCCTGTGTGGAT	NA	False	NA	1	True	AATAAA	-27	NA	97334865	97312838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97334533
ENSMUSG00000021665.10_97312839_97334865_2	chr13	-	1896	14	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	876.700761293197	705	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGCTGCCCTGTGTGGAT	NA	False	NA	1	True	AATAAA	-27	NA	97334865	97312838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313647_97314387_97314563_97315851_97315925_97317590_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
ENSMUSG00000021665.10_97312839_97334865_3	chr13	-	1900	14	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	646.613920458087	1734	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGCTGCCCTGTGTGGAT	NA	False	NA	1	True	AATAAA	-27	NA	97334865	97312838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320310_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
ENSMUSG00000021666.17_97312839_97334803_1	chr13	+	1837	14	NNC	ENSMUSG00000021666.17	novel	2542	5	NA	NA	4882	17100	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	187	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAACCTTCCAGTCTGGGT	NA	False	NA	NA	False	NA	NA	NA	97312838	97334803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315857_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
ENSMUSG00000021666.17_97312839_97334803_2	chr13	+	1843	14	NIC	ENSMUSG00000021666.17	novel	2542	5	NA	NA	4882	17100	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	988	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAACCTTCCAGTCTGGGT	NA	False	NA	NA	False	NA	NA	NA	97312838	97334803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
ENSMUSG00000021666.17_97312839_97334803_3	chr13	+	1835	14	NNC	ENSMUSG00000021666.17	novel	2542	5	NA	NA	4882	17100	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	162	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAACCTTCCAGTCTGGGT	NA	False	NA	NA	False	NA	NA	NA	97312838	97334803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97313098_97313304_97313402_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
ENSMUSG00000021666.17_97312839_97334865_1	chr13	+	1899	14	NNC	ENSMUSG00000021666.17	novel	2542	5	NA	NA	4882	17162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	685	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGAGCTCCCCGCCCGGG	NA	False	NA	NA	False	AAGAAA	-30	NA	97312838	97334865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315857_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
ENSMUSG00000021666.17_97312839_97334865_2	chr13	+	1899	14	NNC	ENSMUSG00000021666.17	novel	2542	5	NA	NA	4882	17162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1931	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGAGCTCCCCGCCCGGG	NA	False	NA	NA	False	AAGAAA	-30	NA	97312838	97334865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97313098_97313304_97313410_97313563_97313655_97314387_97314557_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
ENSMUSG00000021666.17_97312839_97334865_3	chr13	+	1629	14	NNC	ENSMUSG00000021666.17	novel	2542	5	NA	NA	4882	17162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	203	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGAGCTCCCCGCCCGGG	NA	False	NA	NA	False	AAGAAA	-30	NA	97312838	97334865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334809
ENSMUSG00000021666.17_97312839_97334865_6	chr13	+	1907	14	NNC	ENSMUSG00000021666.17	novel	2542	5	NA	NA	4882	17162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGAGCTCCCCGCCCGGG	NA	False	NA	NA	False	AAGAAA	-30	NA	97312838	97334865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318517_97320177_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
ENSMUSG00000021666.17_97312839_97334865_7	chr13	+	1896	14	NNC	ENSMUSG00000021666.17	novel	2542	5	NA	NA	4882	17162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	752	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGAGCTCCCCGCCCGGG	NA	False	NA	NA	False	AAGAAA	-30	NA	97312838	97334865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334542
ENSMUSG00000021666.17_97312839_97334865_8	chr13	+	1900	14	NNC	ENSMUSG00000021666.17	novel	2542	5	NA	NA	4882	17162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	856	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGAGCTCCCCGCCCGGG	NA	False	NA	NA	False	AAGAAA	-30	NA	97312838	97334865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97313098_97313309_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
ENSMUSG00000021666.17_97312839_97334865_9	chr13	+	1900	14	NNC	ENSMUSG00000021666.17	novel	2542	5	NA	NA	4882	17162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1015	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGAGCTCCCCGCCCGGG	NA	False	NA	NA	False	AAGAAA	-30	NA	97312838	97334865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318517_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
ENSMUSG00000021681.9_95487191_95501239_1	chr13	-	1814	9	ISM	ENSMUSG00000021681.9	ENSMUST00000022189.9	3249	14	10621	0	10603	0	3prime_fragment	FALSE	canonical	3	209	junction_4	27.1431390962799	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTCTTTGTATTTGC	NA	False	NA	27	True	AATAAA	-14	NA	95501239	95487190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_95488211_95489254_95489355_95490457_95490586_95492900_95492984_95493704_95493871_95495217_95495320_95498976_95499029_95499344_95499457_95501188
ENSMUSG00000021684.18_95162444_95169628_1	chr13	-	883	4	ISM	ENSMUSG00000021684.18	ENSMUST00000162882.2	2060	9	12946	606	1133	167	3prime_fragment	TRUE	canonical	1	2	junction_3	2.44948974278318	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACTCAGTGACAAAACGAG	NA	False	NA	NA	False	AATAAA	-17	NA	95169628	95162443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_95162738_95164125_95164256_95166820_95166989_95169337
ENSMUSG00000021692.10_107083663_107095294_1	chr13	+	1081	12	FSM	ENSMUSG00000021692.10	ENSMUST00000022203.10	2051	12	-4	974	0	-974	multi-exon	TRUE	canonical	3	504	junction_4	50.5395680025492	1158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCATTTAAATTATTTAAT	NA	False	NA	NA	False	AATACA	-21	NA	107083662	107095294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086125_107086199_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
ENSMUSG00000021692.10_107083663_107095428_1	chr13	+	1215	12	FSM	ENSMUSG00000021692.10	ENSMUST00000022203.10	2051	12	-4	840	0	-840	multi-exon	FALSE	canonical	3	504	junction_4	50.5395680025492	4169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCTAGTGTTTTATATATA	NA	False	NA	15	True	NA	NA	NA	107083662	107095428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086125_107086199_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
ENSMUSG00000021692.10_107083663_107095428_2	chr13	+	1290	11	NIC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	0	-840	intron_retention	FALSE	canonical	3	551	junction_5	39.2372272210971	4025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCTAGTGTTTTATATATA	NA	False	NA	15	True	NA	NA	NA	107083662	107095428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
ENSMUSG00000021692.10_107083663_107095428_3	chr13	+	1086	10	NIC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	0	-840	combination_of_known_splicesites	FALSE	canonical	3	22	junction_8	191.021296724918	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCTAGTGTTTTATATATA	NA	False	NA	15	True	NA	NA	NA	107083662	107095428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086125_107086199_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107093601_107093709_107095162
ENSMUSG00000021693.21_107098360_107105212_1	chr13	-	678	4	ISM	ENSMUSG00000021693.21	ENSMUST00000117423.9	2023	20	28052	-271	8414	0	3prime_fragment	FALSE	canonical	3	116	junction_3	16.3571255285137	131	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCCTTGCCAATTTTATT	NA	False	NA	-2	True	AATAAA	-17	NA	107105212	107098359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_107098733_107100848_107100985_107101525_107101628_107105145
ENSMUSG00000021693.21_107098360_107113626_1	chr13	-	1279	8	ISM	ENSMUSG00000021693.21	ENSMUST00000117423.9	2023	20	19638	-271	0	0	3prime_fragment	FALSE	canonical	3	95	junction_4	20.1474158975026	154	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCCTTGCCAATTTTATT	NA	False	NA	-2	True	AATAAA	-17	NA	107113626	107098359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_107098733_107100848_107100985_107101525_107101628_107105145_107105297_107111002_107111071_107111878_107111990_107113163_107113369_107113493
ENSMUSG00000021694.19_108295272_108331047_1	chr13	+	1537	11	FSM	ENSMUSG00000021694.19	ENSMUST00000123657.8	2395	11	7	851	0	-464	multi-exon	FALSE	canonical	3	37	junction_2	15.1489273547667	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACTTGTCTCCTTGAG	NA	False	NA	12	True	AATATA	-21	NA	108295271	108331047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
ENSMUSG00000021694.19_108295272_108331519_1	chr13	+	2009	11	FSM	ENSMUSG00000021694.19	ENSMUST00000123657.8	2395	11	7	379	0	0	multi-exon	FALSE	canonical	3	37	junction_2	15.1489273547667	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTTTCCTTTCCTTGT	NA	False	NA	7	True	ATTAAA	-18	NA	108295271	108331519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
ENSMUSG00000021696.10_108350944_108419241_2	chr13	+	1031	8	FSM	ENSMUSG00000021696.10	ENSMUST00000022207.10	4013	8	6	2976	0	-1366	multi-exon	FALSE	canonical	0	0	junction_3	37.4045724586758	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGACTGATATCTTGCCT	NA	False	NA	6	True	AATACA	-21	NA	108350943	108419241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_108351035_108393200_108393333_108403723_108403915_108407166_108407248_108408338_108408396_108410819_108410926_108416110_108416248_108419005
ENSMUSG00000021696.10_108350944_108420000_2	chr13	+	1790	8	FSM	ENSMUSG00000021696.10	ENSMUST00000022207.10	4013	8	6	2217	0	-607	multi-exon	FALSE	canonical	0	0	junction_3	37.4045724586758	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGTTGGATTCAATGAGG	NA	False	NA	7	True	AATAAA	-14	NA	108350943	108420000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_108351035_108393200_108393333_108403723_108403915_108407166_108407248_108408338_108408396_108410819_108410926_108416110_108416248_108419005
ENSMUSG00000021707.6_92491654_92521391_1	chr13	+	757	6	FSM	ENSMUSG00000021707.6	ENSMUST00000022218.6	5347	6	420	4170	420	-4170	multi-exon	FALSE	canonical	3	1135	junction_5	174.184270242752	1673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTATGAGTAATTATTTC	NA	False	NA	27	True	NA	NA	NA	92491653	92521391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92504692_92504809_92521232
ENSMUSG00000021707.6_92491654_92521391_2	chr13	+	641	5	NIC	ENSMUSG00000021707.6	novel	5347	6	NA	NA	420	-4170	combination_of_known_splicesites	TRUE	canonical	3	22	junction_4	636.728896391549	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTATGAGTAATTATTTC	NA	False	NA	27	True	NA	NA	NA	92491653	92521391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92521232
ENSMUSG00000021707.6_92491654_92521826_1	chr13	+	1192	6	FSM	ENSMUSG00000021707.6	ENSMUST00000022218.6	5347	6	420	3735	420	-3735	multi-exon	FALSE	canonical	3	1135	junction_5	174.184270242752	2733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAGACTGGATTATTGTA	NA	False	NA	11	True	TATAAA	-16	NA	92491653	92521826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92504692_92504809_92521232
ENSMUSG00000021707.6_92491654_92522192_1	chr13	+	1558	6	FSM	ENSMUSG00000021707.6	ENSMUST00000022218.6	5347	6	420	3369	420	-3369	multi-exon	FALSE	canonical	3	1135	junction_5	174.184270242752	4007	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTTCCTCATCTCAGCA	NA	False	NA	14	True	AATAAA	-17	NA	92491653	92522192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92504692_92504809_92521232
ENSMUSG00000021710.12_104161093_104187262_1	chr13	-	1411	6	ISM	ENSMUSG00000021710.12	ENSMUST00000109315.5	4162	13	58860	1528	11100	0	3prime_fragment	FALSE	canonical	3	279	junction_1	19.6672316303032	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATATCTTGAAGTTTTAT	NA	False	NA	95	True	TTTAAA	-33	NA	104187262	104161092	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_104161589_104172094_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002
ENSMUSG00000021710.12_104161203_104246094_1	chr13	-	2496	13	FSM	ENSMUSG00000021710.12	ENSMUST00000109315.5	4162	13	28	1638	0	-110	multi-exon	TRUE	canonical	3	279	junction_1	22.4276614920058	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCATATGACTGTAATTT	NA	False	NA	-15	True	TATAAA	-37	NA	104246094	104161202	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_104161589_104172094_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
ENSMUSG00000021711.18_104279825_104314923_1	chr13	-	2316	12	FSM	ENSMUSG00000021711.18	ENSMUST00000144060.8	3538	12	54	1168	-8	0	multi-exon	TRUE	canonical	3	331	junction_5	157.730704704606	2691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGATTTTTTTCTTTC	NA	False	NA	-2	True	AATAAA	-42	NA	104314923	104279824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
ENSMUSG00000021711.18_104280462_104314923_1	chr13	-	1694	13	FSM	ENSMUSG00000021711.18	ENSMUST00000141557.8	3502	13	10	1798	-8	0	multi-exon	FALSE	canonical	3	258	junction_6	206.169209766045	2165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAACATTTCTTTATTT	NA	False	NA	22	True	AAAACA	-33	NA	104314923	104280461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_104280754_104280911_104281060_104283751_104283853_104284591_104284791_104286557_104286692_104288672_104288691_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
ENSMUSG00000021711.18_104280462_104314923_2	chr13	-	1686	12	NNC	ENSMUSG00000021711.18	novel	1689	13	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	249.125412341616	1694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAACATTTCTTTATTT	NA	False	NA	22	True	AAAACA	-33	NA	104314923	104280461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_104280754_104280911_104281060_104283751_104283853_104284591_104284791_104286557_104286698_104290799_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
ENSMUSG00000021711.18_104280462_104314923_3	chr13	-	1679	12	FSM	ENSMUSG00000021711.18	ENSMUST00000144060.8	3538	12	54	1805	-8	0	multi-exon	FALSE	canonical	3	331	junction_5	157.730704704606	2097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAACATTTCTTTATTT	NA	False	NA	22	True	AAAACA	-33	NA	104314923	104280461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
ENSMUSG00000021712.16_104315347_104339358_1	chr13	+	3207	11	FSM	ENSMUSG00000021712.16	ENSMUST00000022225.12	3416	11	42	167	0	-167	multi-exon	FALSE	canonical	3	141	junction_1	34.1	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGAGACTTTGAATTGT	NA	False	NA	3	True	AATAAA	-14	NA	104315346	104339358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_104315470_104317581_104317745_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
ENSMUSG00000021712.16_104315347_104339884_1	chr13	+	3733	11	FSM	ENSMUSG00000021712.16	ENSMUST00000022225.12	3416	11	42	-359	0	4	multi-exon	FALSE	canonical	3	141	junction_1	34.1	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGTTGTTATTCTAAAAAT	NA	False	NA	6	True	AATAAA	-16	NA	104315346	104339884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_104315470_104317581_104317745_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
ENSMUSG00000021714.16_104365474_104386125_1	chr13	+	998	10	FSM	ENSMUSG00000021714.16	ENSMUST00000224500.2	1353	10	355	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	127.2119840616	2909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	10	True	AATAAA	-21	NA	104365473	104386125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370741_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
ENSMUSG00000021714.16_104365474_104386125_2	chr13	+	1107	10	NNC	ENSMUSG00000021714.16	novel	1353	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	143.102139125249	2858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	10	True	AATAAA	-21	NA	104365473	104386125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_104365633_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
ENSMUSG00000021714.16_104365474_104394019_1	chr13	+	924	11	NNC	ENSMUSG00000021714.16	novel	1353	10	NA	NA	0	5119	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_10	133.925501679105	176	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAGAACACCAATTGCTC	NA	False	NA	NA	False	NA	NA	NA	104365473	104394019	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868_104386006_104393960
ENSMUSG00000021715.13_104767648_104797895_1	chr13	-	784	3	ISM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	155566	0	131228	0	3prime_fragment	FALSE	canonical	3	752	junction_1	56.5	2990	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGCCTCCCGCTTTATT	NA	False	NA	1	True	AATAAA	-37	NA	104797895	104767647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_104768247_104794536_104794641_104797814
ENSMUSG00000021715.13_104767839_104797895_1	chr13	-	593	3	ISM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	155566	191	131228	-191	3prime_fragment	FALSE	canonical	3	752	junction_1	56.5	1741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAACCATTTGCAGATTG	NA	False	NA	-11	True	AATAAA	-23	NA	104797895	104767838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_104768247_104794536_104794641_104797814
ENSMUSG00000021715.13_104767839_104953461_1	chr13	-	1880	14	FSM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	0	191	0	-191	multi-exon	FALSE	canonical	3	502	junction_8	84.1316241226496	3472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAACCATTTGCAGATTG	NA	False	NA	-11	True	AATAAA	-23	NA	104953461	104767838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
ENSMUSG00000021715.13_104767839_104953461_2	chr13	-	1889	14	NNC	ENSMUSG00000021715.13	novel	2071	14	NA	NA	0	-191	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_5	188.393143005155	3438	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAACCATTTGCAGATTG	NA	False	NA	-11	True	AATAAA	-23	NA	104953461	104767838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929168_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
ENSMUSG00000021716.15_104767839_104953650_1	chr13	+	1781	15	NNC	ENSMUSG00000021716.15	novel	1443	5	NA	NA	-161153	-17127	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCTCCGCGGTAGGACA	NA	False	NA	NA	False	NA	NA	NA	104767838	104953650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194_104953331_104953618
ENSMUSG00000021716.15_104953685_104973998_1	chr13	+	581	5	FSM	ENSMUSG00000021716.15	ENSMUST00000022230.15	2365	5	0	1784	0	-870	multi-exon	FALSE	canonical	3	138	junction_4	17.2536228079786	2646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAGAAAAAAGGAAAAGC	NA	False	NA	NA	False	AAAAAG	-42	NA	104953684	104973998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_104953875_104963562_104963611_104969361_104969506_104970755_104970829_104973872
ENSMUSG00000021716.15_104953747_104973947_1	chr13	+	468	5	FSM	ENSMUSG00000021716.15	ENSMUST00000022230.15	2365	5	62	1835	0	-921	multi-exon	FALSE	canonical	3	138	junction_4	17.2536228079786	1502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAAAAAGAACAAGTCAA	NA	False	NA	NA	False	AAAAAG	-11	NA	104953746	104973947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_104953875_104963562_104963611_104969361_104969506_104970755_104970829_104973872
ENSMUSG00000021716.15_104953747_104974871_1	chr13	+	1392	5	FSM	ENSMUSG00000021716.15	ENSMUST00000022230.15	2365	5	62	911	0	3	multi-exon	FALSE	canonical	3	138	junction_4	17.2536228079786	2558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGTGTATATGATGCCTA	NA	False	NA	NA	False	ATTAAA	-17	NA	104953746	104974871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_104953875_104963562_104963611_104969361_104969506_104970755_104970829_104973872
ENSMUSG00000021747.13_13803533_13825794_1	chr14	+	938	4	ISM	ENSMUSG00000021747.13	ENSMUST00000225744.2	2390	13	-1	141558	0	-141558	5prime_fragment	FALSE	canonical	3	157	junction_2	15.5134350376268	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTTTAGTCAGTTGAAC	NA	False	NA	NA	False	NA	NA	NA	13803532	13825794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303
ENSMUSG00000021748.10_14296836_14303527_1	chr14	+	1175	10	FSM	ENSMUSG00000021748.10	ENSMUST00000022268.10	1513	10	88	250	0	0	multi-exon	FALSE	canonical	3	2290	junction_6	170.664134819183	1443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAATGCTGAAGTGACAGC	NA	False	NA	-13	True	CATAAA	-1	NA	14296835	14303527	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
ENSMUSG00000021748.10_14296836_14303545_1	chr14	+	1193	10	FSM	ENSMUSG00000021748.10	ENSMUST00000022268.10	1513	10	88	232	0	18	multi-exon	FALSE	canonical	3	2290	junction_6	170.664134819183	2116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGTGTCTGAACTGTAAG	NA	False	NA	5	True	CATAAA	-19	NA	14296835	14303545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
ENSMUSG00000021748.10_14296836_14303777_1	chr14	+	1421	9	NNC	ENSMUSG00000021748.10	novel	1513	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	834.7358770144	12597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCTTGGAGTACTATT	NA	False	NA	NA	False	AATAAA	-16	NA	14296835	14303777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298539_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
ENSMUSG00000021748.10_14296836_14303777_2	chr14	+	1420	10	NNC	ENSMUSG00000021748.10	novel	1513	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	799.417720192657	14003	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCTTGGAGTACTATT	NA	False	NA	NA	False	AATAAA	-16	NA	14296835	14303777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_14296883_14296955_14297010_14298242_14298351_14298448_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
ENSMUSG00000021756.13_112600615_112611925_1	chr13	+	618	3	ISM	ENSMUSG00000021756.13	ENSMUST00000184276.8	3009	18	-160	29154	0	-4666	5prime_fragment	FALSE	canonical	3	401	junction_2	2.5	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTAGTCCTTTTCTTCTC	NA	False	NA	NA	False	AATAAA	-24	NA	112600614	112611925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_112600785_112609120_112609208_112611564
ENSMUSG00000021756.13_112600615_112620150_2	chr13	+	1810	6	NNC	ENSMUSG00000021756.13	novel	3004	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	158.377523657873	69	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCGTTCCAATATTATTGC	NA	False	NA	NA	False	AATAAA	-19	NA	112600614	112620150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_112600785_112609120_112609208_112611564_112611644_112616518_112616825_112617957_112618079_112619103
ENSMUSG00000021758.15_112734869_112736186_1	chr13	-	732	2	ISM	ENSMUSG00000021758.15	ENSMUST00000075748.7	2762	21	52649	2	52649	0	3prime_fragment	FALSE	canonical	3	72	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTTCCAACAGCATTTT	9892	False	NA	-1	True	AATAAA	-22	NA	112736186	112734868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_112735566_112736151
ENSMUSG00000021758.15_112734869_112788897_1	chr13	-	2900	22	FSM	ENSMUSG00000021758.15	ENSMUST00000099166.10	3012	22	112	0	-62	0	multi-exon	FALSE	canonical	3	36	junction_3	9.06389513461723	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTTCCAACAGCATTTT	NA	False	NA	-1	True	AATAAA	-22	NA	112788897	112734868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_112735566_112736151_112736269_112736385_112736657_112737945_112738046_112741020_112741167_112748508_112748676_112750230_112750361_112757149_112757305_112757741_112757895_112758698_112758842_112759191_112759240_112759332_112759381_112761314_112761357_112761878_112761960_112762855_112762958_112765371_112765432_112770418_112770470_112772501_112772580_112777683_112777762_112781042_112781101_112787865_112787953_112788809
ENSMUSG00000021759.15_112937326_113004305_1	chr13	+	1320	5	NIC	ENSMUSG00000021759.15	novel	1598	6	NA	NA	0	-123	combination_of_known_splicesites	FALSE	canonical	3	68	junction_1	115.720298565118	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTCCCACCTGTACATT	9637	False	NA	NA	False	ATTAAA	-24	NA	112937325	113004305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_112937801_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUSG00000021759.15_112937326_113004305_2	chr13	+	1472	6	FSM	ENSMUSG00000021759.15	ENSMUST00000070951.8	1272	6	-71	-129	0	-123	multi-exon	FALSE	canonical	3	38	junction_1	139.137342219837	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTCCCACCTGTACATT	9637	False	NA	NA	False	ATTAAA	-24	NA	112937325	113004305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_112937801_112987936_112988089_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUSG00000021759.15_112937326_113004428_2	chr13	+	1595	6	FSM	ENSMUSG00000021759.15	ENSMUST00000070951.8	1272	6	-71	-252	0	0	multi-exon	FALSE	canonical	3	38	junction_1	139.137342219837	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTTGTAGTCAGTTGCAA	9637	False	NA	14	True	AATAAA	-29	NA	112937325	113004428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_112937801_112987936_112988089_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUSG00000021759.15_112937326_113004428_3	chr13	+	1443	5	NIC	ENSMUSG00000021759.15	novel	1598	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	68	junction_1	115.720298565118	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTTGTAGTCAGTTGCAA	9637	False	NA	14	True	AATAAA	-29	NA	112937325	113004428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_112937801_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUSG00000021759.15_112937326_113004428_4	chr13	+	1593	6	NNC	ENSMUSG00000021759.15	novel	1598	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	130.580856177313	962	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTTGTAGTCAGTTGCAA	9637	False	NA	14	True	AATAAA	-29	NA	112937325	113004428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_112937801_112971392_112971548_112993284_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUSG00000021760.6_113179293_113182927_1	chr13	-	922	3	NNC	ENSMUSG00000021760.6	novel	1042	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	10.5	85	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAAGTGCATTTTTTTTT	NA	False	NA	NA	False	AATAAA	-23	NA	113182927	113179292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_113179834_113182068_113182228_113182705
ENSMUSG00000021764.9_114424331_114524616_1	chr13	-	1520	5	FSM	ENSMUSG00000021764.9	ENSMUST00000022286.8	1698	5	178	0	0	0	multi-exon	FALSE	canonical	3	1521	junction_3	83.4187478927849	31758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGCTGTTATGTTTTTA	NA	False	NA	NA	False	AATAAA	-23	NA	114524616	114424330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114487983_114488063_114524494
ENSMUSG00000021764.9_114425184_114524616_1	chr13	-	593	4	FSM	ENSMUSG00000021764.9	ENSMUST00000232101.2	716	4	-30	153	0	0	multi-exon	FALSE	canonical	3	49	junction_1	693.907454604399	2255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACTTGGCAGTTTCTA	NA	False	NA	-18	True	AATAAA	-19	NA	114524616	114425183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_114425403_114453392_114453566_114487983_114488063_114524494
ENSMUSG00000021764.9_114425184_114524616_2	chr13	-	514	3	NIC	ENSMUSG00000021764.9	novel	571	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	58	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACTTGGCAGTTTCTA	NA	False	NA	-18	True	AATAAA	-19	NA	114524616	114425183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_114425403_114453392_114453566_114524494
ENSMUSG00000021764.9_114425184_114524616_3	chr13	-	656	5	NNC	ENSMUSG00000021764.9	novel	686	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	703.231291965879	28732	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACTTGGCAGTTTCTA	NA	False	NA	-18	True	AATAAA	-19	NA	114524616	114425183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_114425403_114444352_114444427_114453392_114453566_114487983_114488063_114524505
ENSMUSG00000021767.20_21531502_21672138_1	chr14	+	1416	6	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	0	93	combination_of_known_junctions	FALSE	canonical	3	106	junction_5	10.1113797278116	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGCAACGATTGTTGTA	NA	False	NA	NA	False	AATAAA	-41	NA	21531501	21672138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022
ENSMUSG00000021771.15_21881634_21895587_1	chr14	+	1297	10	FSM	ENSMUSG00000021771.15	ENSMUST00000022293.14	1954	10	297	360	0	0	multi-exon	FALSE	canonical	3	2055	junction_4	139.679350612946	12742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGGTGTGCATGTTTGTT	NA	False	NA	22	True	AATAGA	-18	NA	21881633	21895587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
ENSMUSG00000021771.15_21881634_21895587_2	chr14	+	1291	10	NNC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	723.804216076334	12496	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGGTGTGCATGTTTGTT	NA	False	NA	22	True	AATAGA	-18	NA	21881633	21895587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893955_21894008_21895213
ENSMUSG00000021771.15_21881634_21895947_1	chr14	+	1657	10	FSM	ENSMUSG00000021771.15	ENSMUST00000022293.14	1954	10	297	0	0	0	multi-exon	FALSE	canonical	3	2055	junction_4	139.679350612946	15392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCTGCAGTTTCTAAGTT	NA	False	NA	12	True	AATAAA	-22	NA	21881633	21895947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
ENSMUSG00000021772.16_4137952_4186974_1	chr14	-	1197	6	NIC	ENSMUSG00000021772.16	novel	4598	4	NA	NA	11458	47741	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCCTGGCCACTCGTGTCT	NA	False	NA	NA	False	NA	NA	NA	4186974	4137951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_4138010_4138657_4138747_4143265_4143317_4184427_4184561_4185274_4185423_4186256
ENSMUSG00000021772.16_4189259_4198458_1	chr14	-	930	4	FSM	ENSMUSG00000021772.16	ENSMUST00000132374.9	4598	4	102	3566	0	0	multi-exon	FALSE	canonical	3	85	junction_3	10.6144555520604	1258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATACCATGGGAACTCTT	NA	False	NA	-39	True	AATAAA	-14	NA	4198458	4189258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_4189750_4191150_4191393_4192889_4193001_4198372
ENSMUSG00000021772.16_4189259_4198560_1	chr14	-	1032	4	FSM	ENSMUSG00000021772.16	ENSMUST00000132374.9	4598	4	0	3566	0	0	multi-exon	FALSE	canonical	3	85	junction_3	10.6144555520604	1310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATACCATGGGAACTCTT	NA	False	NA	-39	True	AATAAA	-14	NA	4198560	4189258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_4189750_4191150_4191393_4192889_4193001_4198372
ENSMUSG00000021773.12_21897247_21898975_1	chr14	-	1106	6	NIC	ENSMUSG00000021773.12	novel	2314	7	NA	NA	-13	0	intron_retention	FALSE	canonical	3	244	junction_2	16.9870538940689	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGAGCATCCTCTTCC	NA	False	NA	-10	True	AATAAA	-17	NA	21898975	21897246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_21897816_21897940_21897996_21898069_21898189_21898277_21898384_21898608_21898737_21898846
ENSMUSG00000021773.12_21897247_21898975_2	chr14	-	920	7	FSM	ENSMUSG00000021773.12	ENSMUST00000124549.9	2314	7	70	1324	-13	0	multi-exon	FALSE	canonical	3	244	junction_3	15.9661099415815	2999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGAGCATCCTCTTCC	NA	False	NA	-10	True	AATAAA	-17	NA	21898975	21897246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_21897496_21897681_21897816_21897940_21897996_21898069_21898189_21898277_21898384_21898608_21898737_21898846
ENSMUSG00000021782.15_24184021_24194584_1	chr14	-	2428	6	ISM	ENSMUSG00000021782.15	ENSMUST00000042009.13	6336	27	33273	0	1672	0	3prime_fragment	TRUE	canonical	3	145	junction_4	6.05309838016862	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGTGTGTAGACCCTGG	NA	False	NA	-4	True	AATAAA	-16	NA	24194584	24184020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675_24188820_24194369
ENSMUSG00000021794.17_34064075_34066215_1	chr14	+	719	2	ISM	ENSMUSG00000021794.17	ENSMUST00000022322.17	3390	13	31391	1007	6746	-1007	3prime_fragment	FALSE	canonical	3	1643	junction_1	0	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTTCAACCACTTAAGC	NA	False	NA	16	True	AATAAA	-24	NA	34064074	34066215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_34064139_34065560
ENSMUSG00000021794.17_34064075_34066864_1	chr14	+	1368	2	ISM	ENSMUSG00000021794.17	ENSMUST00000022322.17	3390	13	31391	358	6746	-358	3prime_fragment	FALSE	canonical	3	1643	junction_1	0	301	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATGTTTCTTTTCTGTGT	NA	False	NA	16	True	ATTAAA	-19	NA	34064074	34066864	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_34064139_34065560
ENSMUSG00000021806.5_19861021_19861855_1	chr14	+	716	2	ISM	ENSMUSG00000021806.5	ENSMUST00000224263.2	4105	19	42716	0	5717	0	3prime_fragment	FALSE	canonical	3	1731	junction_1	0	1980	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGGTCTAAATATCTAT	NA	False	NA	24	True	AATAAA	-16	NA	19861020	19861855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_19861135_19861253
ENSMUSG00000021807.7_19861985_19873892_1	chr14	-	984	8	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	0	-566	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	902.815347133847	2618	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTTTGTTTTGCTCTG	1688	False	NA	-24	True	AATAAA	-16	NA	19873892	19861984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872743_19873732
ENSMUSG00000021807.7_19861985_19873892_3	chr14	-	990	8	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	0	-566	at_least_one_novel_splicesite	FALSE	canonical	3	123	junction_1	904.637801012321	7280	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTTTGTTTTGCTCTG	1688	False	NA	-24	True	AATAAA	-16	NA	19873892	19861984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_19862300_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
ENSMUSG00000021807.7_19861985_19873892_4	chr14	-	992	8	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	0	-566	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	966.653389540534	14925	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTTTGTTTTGCTCTG	1688	False	NA	-24	True	AATAAA	-16	NA	19873892	19861984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867208_19869970_19870075_19872633_19872759_19873736
ENSMUSG00000021807.7_19861985_19873892_5	chr14	-	980	7	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	0	-566	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1014.18134746975	699	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTTTGTTTTGCTCTG	1688	False	NA	-24	True	AATAAA	-16	NA	19873892	19861984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_19862331_19864596_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
ENSMUSG00000021807.7_19861985_19873892_6	chr14	-	988	8	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	0	-566	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	966.653389540534	12846	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTTTGTTTTGCTCTG	1688	False	NA	-24	True	AATAAA	-16	NA	19873892	19861984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867208_19869974_19870075_19872633_19872759_19873736
ENSMUSG00000021807.7_19861985_19873892_7	chr14	-	987	8	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	0	-566	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	902.815347133847	6228	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTTTGTTTTGCTCTG	1688	False	NA	-24	True	AATAAA	-16	NA	19873892	19861984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872750_19873736
ENSMUSG00000021807.7_19861985_19873892_8	chr14	-	1005	8	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	0	-566	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_4	945.86932263934	6897	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTTTGTTTTGCTCTG	1688	False	NA	-24	True	AATAAA	-16	NA	19873892	19861984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867119_19867216_19869974_19870075_19872633_19872759_19873736
ENSMUSG00000021807.7_19861985_19873892_9	chr14	-	975	7	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	0	-566	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1014.18134746975	516	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTTTGTTTTGCTCTG	1688	False	NA	-24	True	AATAAA	-16	NA	19873892	19861984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_19862306_19864576_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
ENSMUSG00000021810.4_20370320_20398134_1	chr14	-	2677	14	FSM	ENSMUSG00000021810.4	ENSMUST00000022344.4	3132	14	55	400	0	-400	multi-exon	FALSE	canonical	3	477	junction_8	30.9081479462529	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTCAGTCTGTGACATTC	NA	False	NA	-1	True	AATAGA	-16	NA	20398134	20370319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_20371020_20374440_20374650_20377291_20377360_20378670_20378858_20378950_20379058_20380021_20380108_20383396_20383526_20386136_20386266_20386949_20387143_20388196_20388376_20388476_20388565_20393323_20393442_20396678_20396890_20397861
ENSMUSG00000021810.4_20370443_20398134_1	chr14	-	2554	14	FSM	ENSMUSG00000021810.4	ENSMUST00000022344.4	3132	14	55	523	0	-523	multi-exon	FALSE	canonical	3	477	junction_8	30.9081479462529	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGGTGTAATTCTGAATA	NA	False	NA	-16	True	AGTAAA	-17	NA	20398134	20370442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_20371020_20374440_20374650_20377291_20377360_20378670_20378858_20378950_20379058_20380021_20380108_20383396_20383526_20386136_20386266_20386949_20387143_20388196_20388376_20388476_20388565_20393323_20393442_20396678_20396890_20397861
ENSMUSG00000021811.8_20434928_20438944_1	chr14	-	1375	5	FSM	ENSMUSG00000021811.8	ENSMUST00000022345.7	1631	5	34	222	0	-222	multi-exon	FALSE	canonical	3	896	junction_2	62.1711347813437	3527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTGGTGGATTATTTAAA	NA	False	NA	-16	True	AATAAA	-15	NA	20438944	20434927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_20435547_20435867_20435955_20438024_20438280_20438367_20438509_20438671
ENSMUSG00000021811.8_20434928_20438944_2	chr14	-	1369	5	NNC	ENSMUSG00000021811.8	novel	1631	5	NA	NA	0	-222	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	426.925344761821	3501	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTGGTGGATTATTTAAA	NA	False	NA	-16	True	AATAAA	-15	NA	20438944	20434927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_20435547_20435867_20435949_20438024_20438280_20438367_20438509_20438671
ENSMUSG00000021814.18_20506236_20529976_1	chr14	-	1833	13	FSM	ENSMUSG00000021814.18	ENSMUST00000224975.2	2727	13	3	891	0	361	multi-exon	FALSE	canonical	3	93	junction_12	241.43268845696	993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTTTAATGTTAAAAGA	8203	False	NA	-18	True	AATAAA	-19	NA	20529976	20506235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529847
ENSMUSG00000021814.18_20506236_20530019_2	chr14	-	1761	13	FSM	ENSMUSG00000021814.18	ENSMUST00000065504.17	2851	13	182	908	-10	361	multi-exon	FALSE	canonical	3	603	junction_12	120.241741458151	1320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTTTAATGTTAAAAGA	8160	False	NA	-18	True	AATAAA	-19	NA	20530019	20506235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
ENSMUSG00000021816.12_20557739_20581827_1	chr14	-	2136	11	ISM	ENSMUSG00000021816.12	ENSMUST00000161989.2	2322	12	14681	0	-7716	0	3prime_fragment	FALSE	canonical	3	102	junction_2	34.294168600507	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTAATCTGGCTCGTT	NA	False	NA	-7	True	AATAAA	-19	NA	20581827	20557738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_20558790_20559483_20559569_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727
ENSMUSG00000021820.19_20786695_20844119_1	chr14	-	1812	19	FSM	ENSMUSG00000021820.19	ENSMUST00000100837.11	3564	19	0	1752	0	0	multi-exon	FALSE	canonical	3	16	junction_6	6.2610396328366	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATTGTTTAAAAAAACGGAA	NA	False	NA	NA	False	NA	NA	NA	20844119	20786694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
ENSMUSG00000021823.11_21079313_21083744_1	chr14	+	2330	3	ISM	ENSMUSG00000021823.11	ENSMUST00000022369.9	5267	21	99847	0	7242	0	3prime_fragment	FALSE	canonical	3	294	junction_1	8	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTAATTGAGGTTATTT	2289	False	NA	NA	False	AATAAA	-19	NA	21079312	21083744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_21079448_21079849_21079955_21081654
ENSMUSG00000021824.14_21084875_21102274_1	chr14	-	3123	9	FSM	ENSMUSG00000021824.14	ENSMUST00000154460.8	6732	9	244	3365	-11	1207	multi-exon	FALSE	canonical	3	207	junction_8	42.1092329543059	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTTAAAGTTTGATTG	NA	False	NA	-8	True	AATAAA	-17	NA	21102274	21084874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102207
ENSMUSG00000021824.14_21085818_21102274_1	chr14	-	2180	9	FSM	ENSMUSG00000021824.14	ENSMUST00000154460.8	6732	9	244	4308	-11	264	multi-exon	FALSE	canonical	3	207	junction_8	42.1092329543059	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGCCATTCTCATGTTT	NA	False	NA	4	True	ATTAAA	-27	NA	21102274	21085817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102207
ENSMUSG00000021824.14_21086637_21102274_1	chr14	-	1361	9	FSM	ENSMUSG00000021824.14	ENSMUST00000154460.8	6732	9	244	5127	-11	0	multi-exon	FALSE	canonical	3	207	junction_8	42.1092329543059	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAAGTGTCATTGCAATT	NA	False	NA	NA	False	NA	NA	NA	21102274	21086636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102207
ENSMUSG00000021832.9_45567285_45586284_1	chr14	+	1487	14	NIC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	0	-878	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	461.412777759015	8096	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTATGTAATTCAGTAATT	NA	False	NA	26	True	AATAAA	-19	NA	45567284	45586284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_45567561_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
ENSMUSG00000021832.9_45567285_45586284_2	chr14	+	1309	14	NNC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	0	-878	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	477.345086243639	8158	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTATGTAATTCAGTAATT	NA	False	NA	26	True	AATAAA	-19	NA	45567284	45586284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574941_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
ENSMUSG00000021832.9_45567285_45586284_3	chr14	+	1316	14	FSM	ENSMUSG00000021832.9	ENSMUST00000022380.9	2234	14	40	878	0	-878	multi-exon	FALSE	canonical	3	1632	junction_5	93.5359944006622	8266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTATGTAATTCAGTAATT	NA	False	NA	26	True	AATAAA	-19	NA	45567284	45586284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
ENSMUSG00000021840.18_47535723_47557074_1	chr14	+	1067	4	FSM	ENSMUSG00000021840.18	ENSMUST00000166743.9	4542	4	-3	3478	0	-3478	multi-exon	FALSE	canonical	3	218	junction_2	12.2836838484589	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGTGTGCTTAATGTGA	9627	False	NA	16	True	GATAAA	-16	NA	47535722	47557074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868
ENSMUSG00000021840.18_47535723_47557184_1	chr14	+	1177	4	FSM	ENSMUSG00000021840.18	ENSMUST00000166743.9	4542	4	-3	3368	0	-3368	multi-exon	FALSE	canonical	3	218	junction_2	12.2836838484589	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCTTAATTGACAACATCA	9627	False	NA	126	True	NA	NA	NA	47535722	47557184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868
ENSMUSG00000021843.18_47886768_47901419_2	chr14	+	336	2	ISM	ENSMUSG00000021843.18	ENSMUST00000190252.7	4436	41	0	72595	0	-353	5prime_fragment	FALSE	canonical	3	625	junction_1	0	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGAAGAATAAAAAGAAAG	NA	False	NA	NA	False	AAAACA	-21	NA	47886767	47901419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_47886897_47901212
ENSMUSG00000021877.13_26359229_26377996_1	chr14	+	1748	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	0	417	0	27	multi-exon	FALSE	canonical	3	1593	junction_4	101.482215190643	2677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGATTGTGTGTTCTTTTG	1686	False	NA	5	True	AATAAA	-15	NA	26359228	26377996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
ENSMUSG00000021877.13_26359398_26377996_1	chr14	+	1579	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	169	417	0	27	multi-exon	FALSE	canonical	3	1593	junction_4	101.482215190643	2329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGATTGTGTGTTCTTTTG	1855	False	NA	5	True	AATAAA	-15	NA	26359397	26377996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
ENSMUSG00000021877.13_26359502_26377996_1	chr14	+	1475	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	273	417	0	27	multi-exon	FALSE	canonical	3	1593	junction_4	101.482215190643	506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGATTGTGTGTTCTTTTG	1959	False	NA	5	True	AATAAA	-15	NA	26359501	26377996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
ENSMUSG00000021884.19_31329810_31341127_1	chr14	-	999	6	ISM	ENSMUSG00000021884.19	ENSMUST00000165955.8	1500	14	21708	-158	-4859	116	3prime_fragment	FALSE	canonical	3	47	junction_3	3.07245829914744	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTTTTGTTTTGTTTT	NA	False	NA	NA	False	AGTAAA	-32	NA	31341127	31329809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928
ENSMUSG00000021884.19_31329810_31362921_1	chr14	-	1990	17	FSM	ENSMUSG00000021884.19	ENSMUST00000022437.16	2644	17	0	654	0	116	multi-exon	FALSE	canonical	3	36	junction_9	6.10199762372946	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTTTTGTTTTGTTTT	6945	False	NA	NA	False	AGTAAA	-32	NA	31362921	31329809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362556_31362745
ENSMUSG00000021884.19_31329810_31363219_1	chr14	-	2288	17	FSM	ENSMUSG00000021884.19	ENSMUST00000022437.16	2644	17	-298	654	-5	116	multi-exon	FALSE	canonical	3	36	junction_9	6.10199762372946	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTTTTGTTTTGTTTT	6647	False	NA	NA	False	AGTAAA	-32	NA	31363219	31329809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362556_31362745
ENSMUSG00000021890.7_31203306_31216981_1	chr14	+	1044	6	NIC	ENSMUSG00000021890.7	novel	4918	6	NA	NA	-13050	-5451	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCGTTGGGGAGACGGA	NA	False	NA	NA	False	NA	NA	NA	31203305	31216981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_31203411_31204747_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
ENSMUSG00000021890.7_31217153_31224326_1	chr14	+	515	4	ISM	ENSMUSG00000021890.7	ENSMUST00000022446.7	4918	6	797	7489	0	1894	5prime_fragment	FALSE	canonical	3	261	junction_1	2.35702260395516	125	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACGAAGCCTCCAGCTGGA	6399	False	NA	NA	False	NA	NA	NA	31217152	31224326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_31217329_31219665_31219761_31222076_31222214_31224219
ENSMUSG00000021891.9_31200749_31216981_2	chr14	-	1958	6	FSM	ENSMUSG00000021891.9	ENSMUST00000055303.5	3946	6	16	1972	-3	793	multi-exon	FALSE	canonical	3	247	junction_5	24.3359815910516	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGTGAATGTGTTTGTTT	NA	False	NA	2	True	NA	NA	NA	31216981	31200748	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_31201768_31204747_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
ENSMUSG00000021891.9_31200954_31216981_1	chr14	-	1611	5	FSM	ENSMUSG00000021891.9	ENSMUST00000228181.2	793	5	-32	-786	-3	588	multi-exon	FALSE	canonical	3	35	junction_1	108.841628065736	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAATTGTAAGTCCTGAAA	NA	False	NA	-1	True	AATAAA	-29	NA	31216981	31200953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_31201768_31209527_31209699_31214278_31214414_31215553_31215922_31216858
ENSMUSG00000021891.9_31200954_31216981_2	chr14	-	1753	6	FSM	ENSMUSG00000021891.9	ENSMUST00000055303.5	3946	6	16	2177	-3	588	multi-exon	FALSE	canonical	3	247	junction_5	24.3359815910516	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAATTGTAAGTCCTGAAA	NA	False	NA	-1	True	AATAAA	-29	NA	31216981	31200953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_31201768_31204747_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
ENSMUSG00000021891.9_31201542_31216981_1	chr14	-	1165	6	FSM	ENSMUSG00000021891.9	ENSMUST00000055303.5	3946	6	16	2765	-3	0	multi-exon	FALSE	canonical	3	247	junction_5	24.3359815910516	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGCATGTGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	31216981	31201541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_31201768_31204747_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
ENSMUSG00000021893.15_31077254_31093941_1	chr14	+	2434	13	ISM	ENSMUSG00000021893.15	ENSMUST00000022451.14	3648	21	18659	0	-10259	0	3prime_fragment	TRUE	canonical	3	220	junction_5	24.4180886957918	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGTAGTTTAATGTCCAG	5092	False	NA	15	True	AATAAA	-20	NA	31077253	31093941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_31077316_31080562_31080710_31081163_31081271_31082081_31082203_31085435_31085581_31086404_31086505_31087412_31087549_31088124_31088201_31090012_31090159_31091154_31091218_31091677_31091809_31092658_31092752_31092834
ENSMUSG00000021900.11_31363014_31390145_1	chr14	+	1677	3	FSM	ENSMUSG00000021900.11	ENSMUST00000128014.2	689	3	29	-1017	0	-391	multi-exon	FALSE	canonical	2	5	junction_1	7.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGCAGAATACTGGCTGGG	NA	False	NA	6	True	AATAAA	-22	NA	31363013	31390145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_31363093_31387838_31387989_31388697
ENSMUSG00000021900.11_31363014_31390145_2	chr14	+	1933	4	FSM	ENSMUSG00000021900.11	ENSMUST00000090147.7	2324	4	0	391	0	-391	multi-exon	FALSE	canonical	1	3	junction_2	7.40870359029762	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGCAGAATACTGGCTGGG	NA	False	NA	6	True	AATAAA	-22	NA	31363013	31390145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_31363093_31384026_31384283_31387838_31387989_31388697
ENSMUSG00000021901.11_30973468_30975299_1	chr14	+	644	4	ISM	ENSMUSG00000021901.11	ENSMUST00000188453.2	814	9	-69	1795	0	328	5prime_fragment	FALSE	canonical	3	401	junction_2	20.7417989148054	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGGATGTTGACATCTT	NA	False	NA	NA	False	AATAAA	-22	NA	30973467	30975299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_30973612_30973706_30973737_30973856_30973912_30974884
ENSMUSG00000021902.8_30959652_30962135_1	chr14	-	781	4	NNC	ENSMUSG00000021902.8	novel	2084	11	NA	NA	-184	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	12.675435561221	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGGTCTCCTTGTGAATT	NA	False	NA	-3	True	AATAAA	-14	NA	30962135	30959651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_30960111_30960293_30960440_30961587_30961695_30962066
ENSMUSG00000021905.15_31804833_31807566_1	chr14	-	646	3	FSM	ENSMUSG00000021905.15	ENSMUST00000067955.12	2953	3	0	2307	0	0	multi-exon	FALSE	canonical	3	570	junction_1	6	7368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATCCTGAGTGTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	31807566	31804832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_31805204_31806863_31806939_31807366
ENSMUSG00000021905.15_31804833_31807566_2	chr14	-	571	2	FSM	ENSMUSG00000021905.15	ENSMUST00000124303.9	809	2	120	118	0	0	multi-exon	FALSE	canonical	3	69	junction_1	0	498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATCCTGAGTGTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	31807566	31804832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_31805204_31807366
ENSMUSG00000021905.15_31804833_31807686_1	chr14	-	766	3	FSM	ENSMUSG00000021905.15	ENSMUST00000067955.12	2953	3	-120	2307	0	0	multi-exon	FALSE	canonical	3	570	junction_1	6	7407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATCCTGAGTGTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	31807686	31804832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_31805204_31806863_31806939_31807366
ENSMUSG00000021906.15_31807744_31825160_1	chr14	+	2003	8	FSM	ENSMUSG00000021906.15	ENSMUST00000022462.14	2376	8	374	-1	0	1	multi-exon	FALSE	canonical	3	171	junction_6	23.2422908000191	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTTTAATGTTTCAGT	NA	False	NA	21	True	AATACA	-20	NA	31807743	31825160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_31808011_31813592_31813717_31814024_31814089_31817321_31817429_31818443_31818586_31821345_31821589_31822942_31823052_31824213
ENSMUSG00000021911.17_31984668_32019177_1	chr14	+	1575	6	ISM	ENSMUSG00000021911.17	ENSMUST00000170129.8	2786	15	60679	0	-12996	0	3prime_fragment	FALSE	canonical	1	134	junction_3	120.054321038437	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCATGCCACTTATATTT	NA	False	NA	15	True	AATAAA	-28	NA	31984667	32019177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_31984789_31993586_31993666_31996806_31996916_32006055_32006162_32017155_32017285_32018146
ENSMUSG00000021916.17_30721784_30723566_1	chr14	+	661	4	NNC	ENSMUSG00000021916.17	novel	1681	8	NA	NA	-1573	-7082	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	356	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGACGGCCTTTACTCGGG	1953	False	NA	NA	False	NA	NA	NA	30721783	30723566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_30722180_30722634_30722718_30722800_30722861_30723444
ENSMUSG00000021917.17_30721784_30723320_1	chr14	-	697	4	NNC	ENSMUSG00000021917.17	novel	702	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	826.394982237106	4026	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACATTTGTTTTCTTTTT	NA	False	NA	-5	True	AATAAA	-16	NA	30723320	30721783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_30722180_30722639_30722722_30722800_30722861_30723161
ENSMUSG00000021917.17_30723361_30733948_1	chr14	-	1495	10	NIC	ENSMUSG00000021917.17	novel	949	4	NA	NA	-10319	-1008	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCAGGGGTTGTCCGTGCC	NA	False	NA	NA	False	NA	NA	NA	30733948	30723360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_30723386_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
ENSMUSG00000021928.10_61578195_61597888_1	chr14	-	1088	4	FSM	ENSMUSG00000021928.10	ENSMUST00000022494.10	10092	4	0	9004	0	-981	multi-exon	FALSE	canonical	3	296	junction_1	24.8506650928211	3183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTTTGCTTCAGCTTTT	NA	False	NA	NA	False	NA	NA	NA	61597888	61578194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_61578854_61579536_61579676_61584820_61584891_61597668
ENSMUSG00000021928.10_61578440_61597769_1	chr14	-	724	4	FSM	ENSMUSG00000021928.10	ENSMUST00000022494.10	10092	4	119	9249	0	-1226	multi-exon	FALSE	canonical	3	296	junction_1	24.8506650928211	913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGGTGTGACTTAGTAG	NA	False	NA	-5	True	ATTAAA	-18	NA	61597769	61578439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_61578854_61579536_61579676_61584820_61584891_61597668
ENSMUSG00000021928.10_61578440_61597888_1	chr14	-	843	4	FSM	ENSMUSG00000021928.10	ENSMUST00000022494.10	10092	4	0	9249	0	-1226	multi-exon	FALSE	canonical	3	296	junction_1	24.8506650928211	3058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGGTGTGACTTAGTAG	NA	False	NA	-5	True	ATTAAA	-18	NA	61597888	61578439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_61578854_61579536_61579676_61584820_61584891_61597668
ENSMUSG00000021930.15_61771754_61794207_1	chr14	-	1562	5	FSM	ENSMUSG00000021930.15	ENSMUST00000022497.15	4002	5	128	2312	0	0	multi-exon	FALSE	canonical	3	133	junction_1	8.67467578644874	1208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTCAGTATTATATTTA	NA	False	NA	NA	False	AATAAA	-13	NA	61794207	61771753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_61772691_61777585_61777689_61783130_61783298_61787192_61787310_61793969
ENSMUSG00000021930.15_61772296_61794207_1	chr14	-	1020	5	FSM	ENSMUSG00000021930.15	ENSMUST00000022497.15	4002	5	128	2854	0	-542	multi-exon	FALSE	canonical	3	133	junction_1	8.67467578644874	959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTAATTGAGTGATTATT	NA	False	NA	-6	True	TATAAA	-43	NA	61794207	61772295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_61772691_61777585_61777689_61783130_61783298_61787192_61787310_61793969
ENSMUSG00000021930.15_61772296_61794207_2	chr14	-	1076	6	NNC	ENSMUSG00000021930.15	novel	4002	5	NA	NA	0	-542	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	71.0278818493132	874	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTAATTGAGTGATTATT	NA	False	NA	-6	True	TATAAA	-43	NA	61794207	61772295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_61772691_61776533_61776590_61777585_61777689_61783130_61783298_61787192_61787310_61793969
ENSMUSG00000021932.14_62569517_62609960_1	chr14	+	899	10	NNC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	0	-481	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	302.781712512659	2477	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTTGCCTATTCTG	NA	False	NA	15	True	AATAAA	-24	NA	62569516	62609960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_62569626_62584016_62584092_62587848_62587926_62590977_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
ENSMUSG00000021932.14_62569517_62609960_2	chr14	+	902	10	NNC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	0	-481	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	300.126269722891	2447	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTTGCCTATTCTG	NA	False	NA	15	True	AATAAA	-24	NA	62569516	62609960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_62569626_62584016_62584092_62587848_62587926_62590971_62591087_62597914_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
ENSMUSG00000021932.14_62569517_62609960_3	chr14	+	1007	11	NNC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	0	-481	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	256.276588864453	5739	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTTGCCTATTCTG	NA	False	NA	15	True	AATAAA	-24	NA	62569516	62609960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_62569626_62584016_62584092_62585969_62586078_62587848_62587926_62590977_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
ENSMUSG00000021932.14_62569517_62609960_4	chr14	+	1013	11	FSM	ENSMUSG00000021932.14	ENSMUST00000022499.13	1494	11	0	481	0	-481	multi-exon	FALSE	canonical	3	538	junction_2	112.951139879153	7428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTTGCCTATTCTG	NA	False	NA	15	True	AATAAA	-24	NA	62569516	62609960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_62569626_62584016_62584092_62585969_62586078_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
ENSMUSG00000021938.13_56960245_57015773_1	chr14	-	2036	9	FSM	ENSMUSG00000021938.13	ENSMUST00000022507.13	4114	9	0	2078	0	1198	multi-exon	FALSE	canonical	3	306	junction_8	29.8556422640679	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTAGTGGTATTCCCT	NA	False	NA	0	True	AATAAA	-25	NA	57015773	56960244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_56960738_56962762_56962933_56965976_56966035_56986291_56986401_56996086_56996172_56999290_56999488_57001605_57001702_57009161_57009464_57015247
ENSMUSG00000021939.9_63359963_63380584_1	chr14	+	1902	10	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	0	1272	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	2369.69959548452	9624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	NA	False	NA	26	True	AATAAA	-21	NA	63359962	63380584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63360019_63370769_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
ENSMUSG00000021939.9_63359963_63380584_2	chr14	+	1903	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	52	2788	0	1272	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	9698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	NA	False	NA	26	True	AATAAA	-21	NA	63359962	63380584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
ENSMUSG00000021948.18_30317313_30326113_1	chr14	-	1698	10	ISM	ENSMUSG00000021948.18	ENSMUST00000112207.8	2139	15	3666	-236	1515	0	3prime_fragment	FALSE	canonical	3	102	junction_9	12.2151494687216	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGGCTGTGGGGACATT	4089	False	NA	-5	True	AATAAA	-15	NA	30326113	30317312	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324693_30324785_30326063
ENSMUSG00000021951.8_57787054_57809026_1	chr14	-	834	5	NNC	ENSMUSG00000021951.8	novel	880	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	107.885066158389	2165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGTCATGAGGTTGAGA	NA	False	NA	-8	True	AATAAA	-20	NA	57809026	57787053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_57787337_57787818_57788100_57795490_57795574_57803378_57803535_57808995
ENSMUSG00000021952.17_57879486_57902424_1	chr14	-	1381	3	FSM	ENSMUSG00000021952.17	ENSMUST00000173940.8	1893	3	268	244	0	0	multi-exon	FALSE	canonical	3	257	junction_1	39	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAGAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	57902424	57879485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_57880681_57885875_57885982_57902344
ENSMUSG00000021953.15_63729796_63746217_1	chr14	-	1557	9	FSM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	324	0	-12	0	multi-exon	FALSE	canonical	3	2964	junction_2	186.921733286956	24472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	-16	True	ATTAAA	-18	NA	63746217	63729795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
ENSMUSG00000021953.15_63729907_63746217_1	chr14	-	1441	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-111	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1043.90932915651	1703	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGAGACTTATTCTCTT	NA	False	NA	-12	True	ATTAAA	-17	NA	63746217	63729906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_63730291_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
ENSMUSG00000021953.15_63729907_63746217_2	chr14	-	1446	9	FSM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	324	111	-12	-111	multi-exon	FALSE	canonical	3	2964	junction_2	186.921733286956	15293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGAGACTTATTCTCTT	NA	False	NA	-12	True	ATTAAA	-17	NA	63746217	63729906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
ENSMUSG00000021957.8_30271138_30295581_1	chr14	+	2077	14	FSM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	50	1096	0	0	multi-exon	FALSE	canonical	3	1855	junction_3	147.090520774709	10798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCAGACTCTTTTTTTTT	NA	False	NA	38	True	AATATA	-21	NA	30271137	30295581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
ENSMUSG00000021957.8_30271138_30295581_2	chr14	+	2072	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	573.390270554763	5235	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCAGACTCTTTTTTTTT	NA	False	NA	38	True	AATATA	-21	NA	30271137	30295581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294169_30294288_30295293
ENSMUSG00000021957.8_30293134_30295581_1	chr14	+	475	3	NNC	ENSMUSG00000021957.8	novel	1401	8	NA	NA	1472	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1164	1521	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCAGACTCTTTTTTTTT	NA	False	NA	38	True	AATATA	-21	NA	30293133	30295581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_30293203_30294169_30294288_30295293
ENSMUSG00000021958.6_64097813_64156724_1	chr14	+	715	7	FSM	ENSMUSG00000021958.6	ENSMUST00000022528.6	1295	7	0	580	0	-109	multi-exon	FALSE	canonical	3	56	junction_4	11.9443152447793	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGGAAAGAAAAAAAACAAAG	4087	False	NA	NA	False	NA	NA	NA	64097812	64156724	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_64097897_64101664_64101775_64103551_64103645_64105967_64106047_64109750_64109844_64115560_64115638_64156545
ENSMUSG00000021958.6_64097813_64157304_1	chr14	+	1406	8	NNC	ENSMUSG00000021958.6	novel	1295	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_6	31.4324672910034	632	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGAGCCTTTCACATGA	4087	False	NA	NA	False	AATAAA	-39	NA	64097812	64157304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_64097897_64101664_64101775_64103551_64103645_64105967_64106047_64109750_64109844_64115560_64115638_64130171_64130283_64156545
ENSMUSG00000021963.18_58035675_58039606_3	chr14	+	712	5	NNC	ENSMUSG00000021963.18	novel	5125	4	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	1484.07974431969	17806	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGACTTTGCCATTAAGCCT	NA	False	NA	NA	False	AATAAA	-23	NA	58035674	58039606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_58035812_58035944_58036055_58038016_58038131_58038950_58039074_58039378
ENSMUSG00000021963.18_58035675_58039787_1	chr14	+	893	5	NNC	ENSMUSG00000021963.18	novel	5125	4	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	1484.07974431969	31152	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCAGGTGTAAAAGTTAAT	NA	False	NA	-1	True	TATAAA	-31	NA	58035674	58039787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_58035812_58035944_58036055_58038016_58038131_58038950_58039074_58039378
ENSMUSG00000021963.18_58035721_58039784_1	chr14	+	844	5	NNC	ENSMUSG00000021963.18	novel	5125	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	1484.07974431969	9799	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCCCAGGTGTAAAAGTT	NA	False	NA	-4	True	TATAAA	-28	NA	58035720	58039784	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_58035812_58035944_58036055_58038016_58038131_58038950_58039074_58039378
ENSMUSG00000021967.5_58063691_58064407_1	chr14	+	522	2	NNC	ENSMUSG00000021967.5	novel	2877	2	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	155	junction_1	0	9076	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTGTCTCATACGGAATA	NA	False	NA	27	True	ATTAAA	-19	NA	58063690	58064407	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_58063771_58063965
ENSMUSG00000021967.5_58063691_58064407_2	chr14	+	531	2	FSM	ENSMUSG00000021967.5	ENSMUST00000022538.5	2877	2	0	2346	0	2	multi-exon	FALSE	canonical	3	956	junction_1	0	9485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTGTCTCATACGGAATA	NA	False	NA	27	True	ATTAAA	-19	NA	58063690	58064407	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_58063780_58063965
ENSMUSG00000021969.9_58072497_58127733_1	chr14	-	1680	12	NNC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	0	652	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	65.9081504635099	158	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAGAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	58127733	58072496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_58073012_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
ENSMUSG00000021969.9_58073567_58127733_1	chr14	-	1779	13	FSM	ENSMUSG00000021969.9	ENSMUST00000089473.5	5186	13	0	3407	0	144	multi-exon	FALSE	canonical	3	200	junction_2	22.1702691308277	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACACTCAAAGAAGGATTC	NA	False	NA	NA	False	AATAAA	-26	NA	58127733	58073566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_58074104_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
ENSMUSG00000021969.9_58073711_58127733_1	chr14	-	1635	13	FSM	ENSMUSG00000021969.9	ENSMUST00000089473.5	5186	13	0	3551	0	0	multi-exon	FALSE	canonical	3	200	junction_2	22.1702691308277	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAATGATGCCCAAATCA	NA	False	NA	NA	False	AAAAAG	-38	NA	58127733	58073710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_58074104_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
ENSMUSG00000021969.9_58073856_58127733_1	chr14	-	1490	13	FSM	ENSMUSG00000021969.9	ENSMUST00000089473.5	5186	13	0	3696	0	-145	multi-exon	FALSE	canonical	3	200	junction_2	22.1702691308277	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTCACGTGTTAACATGCC	NA	False	NA	NA	False	NA	NA	NA	58127733	58073855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_58074104_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
ENSMUSG00000021969.9_58096018_58127733_1	chr14	-	515	5	ISM	ENSMUSG00000021969.9	ENSMUST00000226057.2	2179	14	-54	22869	0	5014	5prime_fragment	FALSE	canonical	3	203	junction_2	18.4577219612822	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGCTCAGCATGTGACA	NA	False	NA	NA	False	ATTAAA	-15	NA	58127733	58096017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
ENSMUSG00000021975.10_65187494_65230511_1	chr14	+	664	5	ISM	ENSMUSG00000021975.10	ENSMUST00000224593.2	3476	8	-257	17738	0	-17738	5prime_fragment	FALSE	canonical	3	242	junction_3	12.031209415516	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATTCACAGGCACAGTGT	NA	False	NA	NA	False	NA	NA	NA	65187493	65230511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_65187817_65217570_65217699_65223751_65223813_65227980_65228044_65230422
ENSMUSG00000021975.10_65187762_65230511_1	chr14	+	396	5	ISM	ENSMUSG00000021975.10	ENSMUST00000224593.2	3476	8	11	17738	0	-17738	5prime_fragment	FALSE	canonical	3	242	junction_3	12.031209415516	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATTCACAGGCACAGTGT	NA	False	NA	NA	False	NA	NA	NA	65187761	65230511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_65187817_65217570_65217699_65223751_65223813_65227980_65228044_65230422
ENSMUSG00000021975.10_65187762_65277281_1	chr14	+	2406	17	FSM	ENSMUSG00000021975.10	ENSMUST00000043914.8	2674	17	268	0	0	0	multi-exon	FALSE	canonical	3	162	junction_12	28.2795752266543	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCCAGTTCTATTGCACT	NA	False	NA	17	True	AATAAA	-17	NA	65187761	65277281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_65187817_65217570_65217699_65223751_65223813_65227980_65228044_65230422_65230563_65232430_65232518_65244694_65244816_65245439_65245575_65253978_65254091_65257764_65257946_65263853_65263915_65266334_65266507_65269668_65269794_65271376_65271545_65273846_65273946_65274794_65274933_65276721
ENSMUSG00000021981.11_59678430_59784769_1	chr14	+	1454	11	FSM	ENSMUSG00000021981.11	ENSMUST00000022553.6	3037	11	0	1583	0	-1583	multi-exon	FALSE	canonical	3	224	junction_1	43.2892596379287	687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAACCTAGAATAATATATT	NA	False	NA	-23	True	TATAAA	-22	NA	59678429	59784769	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59784434
ENSMUSG00000021993.11_61064874_61141060_1	chr14	+	1056	9	ISM	ENSMUSG00000021993.11	ENSMUST00000063562.9	3015	19	42852	618	42787	-618	3prime_fragment	FALSE	canonical	3	230	junction_2	21.9031961138095	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCGTGTCTCACCTGCTTG	NA	False	NA	NA	False	AATAAA	-18	NA	61064873	61141060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_61064902_61066835_61066914_61068561_61068767_61071433_61071544_61080656_61080732_61083832_61083953_61109466_61109589_61112682_61112757_61140816
ENSMUSG00000021996.17_74969759_74987288_1	chr14	+	1049	9	FSM	ENSMUSG00000021996.17	ENSMUST00000022573.17	1988	9	22	917	0	0	multi-exon	FALSE	canonical	3	1089	junction_1	102.16133074701	10782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTAAATTGTTATTTT	NA	False	NA	13	True	AATAAA	-14	NA	74969758	74987288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_74969829_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
ENSMUSG00000022008.5_76327894_76348235_1	chr14	-	1206	8	FSM	ENSMUSG00000022008.5	ENSMUST00000022585.5	5389	8	-35	4218	-35	-4218	multi-exon	FALSE	canonical	3	101	junction_3	16.688013540214	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGTGCACAAATACGTCT	NA	False	NA	-15	True	AATATA	-17	NA	76348235	76327893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_76328187_76332446_76332546_76335893_76336059_76336499_76336632_76339885_76339992_76343493_76343593_76344760_76344894_76348056
ENSMUSG00000022008.5_76328008_76348235_1	chr14	-	1092	8	FSM	ENSMUSG00000022008.5	ENSMUST00000022585.5	5389	8	-35	4332	-35	-4332	multi-exon	FALSE	canonical	3	101	junction_3	16.688013540214	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCGGTTTTCACATGGCA	NA	False	NA	NA	False	AATAAA	-19	NA	76348235	76328007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_76328187_76332446_76332546_76335893_76336059_76336499_76336632_76339885_76339992_76343493_76343593_76344760_76344894_76348056
ENSMUSG00000022009.2_76348331_76372525_1	chr14	+	1675	10	NNC	ENSMUSG00000022009.2	novel	3974	10	NA	NA	0	-2294	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	155.526187703963	1273	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATAGTGTGTCTGTGTCA	NA	False	NA	23	True	AATAAA	-19	NA	76348330	76372525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_76348767_76349363_76349438_76351619_76351714_76352417_76352481_76353223_76353301_76361925_76362019_76363577_76363772_76368252_76368370_76370411_76370639_76372225
ENSMUSG00000022010.20_76742149_76745203_1	chr14	+	1529	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	231	2	179	0	multi-exon	FALSE	canonical	3	2255	junction_1	40	1063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	6770	False	NA	29	True	AATAAA	-19	NA	76742148	76745203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_76742282_76742688_76742738_76743856
ENSMUSG00000022013.5_78063655_78112366_1	chr14	-	533	4	NIC	ENSMUSG00000022013.5	novel	6193	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	309.604407088932	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCTGATGCTTTTCCACA	NA	False	NA	-7	True	NA	NA	NA	78112366	78063654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_78063911_78077607_78077679_78081835_78081913_78112237
ENSMUSG00000022013.5_78063655_78112366_2	chr14	-	659	6	FSM	ENSMUSG00000022013.5	ENSMUST00000226459.2	6193	6	0	5534	0	0	multi-exon	FALSE	canonical	3	520	junction_3	59.8618409339372	7531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCTGATGCTTTTCCACA	NA	False	NA	-7	True	NA	NA	NA	78112366	78063654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_78063911_78077607_78077679_78081835_78081913_78090337_78090412_78094378_78094431_78112237
ENSMUSG00000022013.5_78063655_78112366_3	chr14	-	582	5	NIC	ENSMUSG00000022013.5	novel	6193	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_2	256.190724851623	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCTGATGCTTTTCCACA	NA	False	NA	-7	True	NA	NA	NA	78112366	78063654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_78063911_78077607_78077679_78090337_78090412_78094378_78094431_78112237
ENSMUSG00000022013.5_78063655_78112366_4	chr14	-	654	6	NNC	ENSMUSG00000022013.5	novel	6193	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	245.528491218433	7044	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCTGATGCTTTTCCACA	NA	False	NA	-7	True	NA	NA	NA	78112366	78063654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_78063911_78077607_78077679_78081835_78081913_78090337_78090412_78094378_78094426_78112237
ENSMUSG00000022013.5_78063655_78112366_5	chr14	-	607	5	FSM	ENSMUSG00000022013.5	ENSMUST00000022590.5	674	5	199	-132	0	0	multi-exon	FALSE	canonical	3	15	junction_4	265.32856989024	1720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCTGATGCTTTTCCACA	NA	False	NA	-7	True	NA	NA	NA	78112366	78063654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_78063911_78077607_78077679_78081835_78081913_78090337_78090412_78112237
ENSMUSG00000022018.8_79526196_79538941_1	chr14	-	774	5	FSM	ENSMUSG00000022018.8	ENSMUST00000022595.8	918	5	144	0	144	0	multi-exon	FALSE	canonical	3	129	junction_2	11.7046999107196	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTACTTTGAAAGCTGCC	NA	False	NA	-11	True	AATAAA	-14	NA	79538941	79526195	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_79526560_79527683_79527747_79529110_79529219_79538154_79538341_79538888
ENSMUSG00000022022.4_79635426_79661031_1	chr14	+	1589	11	FSM	ENSMUSG00000022022.4	ENSMUST00000022600.4	1799	11	214	-4	0	4	multi-exon	FALSE	canonical	3	73	junction_10	10.5683489722851	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGCCTACAGAGTTTTT	NA	False	NA	5	True	AATAAA	-16	NA	79635425	79661031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_79635477_79637131_79637240_79638861_79639288_79640264_79640357_79644016_79644099_79644285_79644394_79649081_79649255_79650426_79650545_79653317_79653455_79656627_79656727_79660836
ENSMUSG00000022023.7_79699092_79718485_1	chr14	-	1509	10	NNC	ENSMUSG00000022023.7	novel	1512	11	NA	NA	-83	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	111.891812827292	1204	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGCTATGTATCTGTTA	NA	False	NA	91	True	NA	NA	NA	79718485	79699091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_79699565_79703622_79703790_79704712_79704904_79707544_79707621_79708126_79708174_79709791_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
ENSMUSG00000022023.7_79699092_79718485_2	chr14	-	1391	8	NIC	ENSMUSG00000022023.7	novel	1512	11	NA	NA	-83	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_3	112.21899144448	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGCTATGTATCTGTTA	NA	False	NA	91	True	NA	NA	NA	79718485	79699091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_79699570_79703622_79703790_79704712_79704904_79709791_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
ENSMUSG00000022023.7_79699092_79718485_3	chr14	-	1514	10	FSM	ENSMUSG00000022023.7	ENSMUST00000022601.7	3704	10	475	1715	-83	0	multi-exon	FALSE	canonical	3	326	junction_1	16.1780219761789	1212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGCTATGTATCTGTTA	NA	False	NA	91	True	NA	NA	NA	79718485	79699091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_79699570_79703622_79703790_79704712_79704904_79707544_79707621_79708126_79708174_79709791_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
ENSMUSG00000022024.11_79825131_79866417_1	chr14	+	1169	12	NNC	ENSMUSG00000022024.11	novel	7392	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	532.160061051666	12306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGTGTGTTCGAGAGAGC	NA	False	NA	31	True	AATAAA	-20	NA	79825130	79866417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840354_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280_79862463_79866291
ENSMUSG00000022024.11_79825249_79866417_1	chr14	+	1051	12	NNC	ENSMUSG00000022024.11	novel	7392	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	532.160061051666	4530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGTGTGTTCGAGAGAGC	NA	False	NA	31	True	AATAAA	-20	NA	79825248	79866417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840354_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280_79862463_79866291
ENSMUSG00000022024.11_79825249_79866417_2	chr14	+	1055	13	FSM	ENSMUSG00000022024.11	ENSMUST00000054908.10	7392	13	118	6219	0	0	multi-exon	FALSE	canonical	3	1684	junction_8	86.763527603609	14990	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGTGTGTTCGAGAGAGC	NA	False	NA	31	True	AATAAA	-20	NA	79825248	79866417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280_79862463_79866291
ENSMUSG00000022024.11_79825249_79866508_1	chr14	+	1146	13	FSM	ENSMUSG00000022024.11	ENSMUST00000054908.10	7392	13	118	6128	0	91	multi-exon	FALSE	canonical	3	1684	junction_8	86.763527603609	15317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCTTTAGAAATGATTTT	NA	False	NA	19	True	ATTAAA	-15	NA	79825248	79866508	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280_79862463_79866291
ENSMUSG00000022024.11_79825249_79866508_2	chr14	+	1142	12	NNC	ENSMUSG00000022024.11	novel	7392	13	NA	NA	0	91	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	532.160061051666	5028	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCTTTAGAAATGATTTT	NA	False	NA	19	True	ATTAAA	-15	NA	79825248	79866508	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840354_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280_79862463_79866291
ENSMUSG00000022024.11_79862346_79866417_1	chr14	+	243	2	FSM	ENSMUSG00000022024.11	ENSMUST00000226320.2	510	2	267	0	267	0	multi-exon	FALSE	canonical	3	1882	junction_1	0	1151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGTGTGTTCGAGAGAGC	NA	False	NA	31	True	AATAAA	-20	NA	79862345	79866417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_79862463_79866291
ENSMUSG00000022033.10_66043557_66055271_1	chr14	+	1449	8	FSM	ENSMUSG00000022033.10	ENSMUST00000022612.10	1720	8	271	0	-124	0	multi-exon	FALSE	canonical	3	729	junction_5	59.6342594316319	2122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGCATTATCTGTTTTT	NA	False	NA	25	True	AATAAA	-41	NA	66043556	66055271	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_66043584_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
ENSMUSG00000022034.11_66068875_66071368_1	chr14	-	565	3	ISM	ENSMUSG00000022034.11	ENSMUST00000022613.10	2913	11	75	12388	-11	0	5prime_fragment	FALSE	canonical	3	1081	junction_1	21	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAATAAAAAAAAACAGAAGA	6419	False	NA	NA	False	NA	NA	NA	66071368	66068874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_66069244_66070112_66070191_66071250
ENSMUSG00000022035.7_66074809_66102705_1	chr14	+	821	9	FSM	ENSMUSG00000022035.7	ENSMUST00000022614.7	2230	9	58	1351	0	-298	multi-exon	FALSE	canonical	3	231	junction_2	11.4229757506527	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTACCTTCATTCTACATA	NA	False	NA	NA	False	NA	NA	NA	66074808	66102705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_66074934_66077896_66077945_66083744_66083785_66089065_66089118_66091550_66091627_66093872_66093977_66094142_66094346_66097618_66097665_66102578
ENSMUSG00000022035.7_66074809_66102814_1	chr14	+	930	9	FSM	ENSMUSG00000022035.7	ENSMUST00000022614.7	2230	9	58	1242	0	-189	multi-exon	FALSE	canonical	3	231	junction_2	11.4229757506527	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAAAGTTTAGGGAAAGGA	NA	False	NA	NA	False	AATATA	-18	NA	66074808	66102814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_66074934_66077896_66077945_66083744_66083785_66089065_66089118_66091550_66091627_66093872_66093977_66094142_66094346_66097618_66097665_66102578
ENSMUSG00000022037.16_66206091_66218996_1	chr14	+	1651	9	FSM	ENSMUSG00000022037.16	ENSMUST00000022616.14	1810	9	159	0	0	0	multi-exon	TRUE	canonical	3	13	junction_1	2.72717802865893	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTGGGTCTGTTTTTTA	NA	False	NA	13	True	AATAAA	-20	NA	66206090	66218996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_66206138_66209180_66209302_66210773_66210923_66212291_66212463_66213029_66213442_66214354_66214460_66217099_66217330_66218302_66218479_66218756
ENSMUSG00000022051.16_67224601_67246305_1	chr14	-	1304	6	FSM	ENSMUSG00000022051.16	ENSMUST00000022634.9	3238	6	21	1913	0	121	multi-exon	FALSE	canonical	3	675	junction_1	44.8508639827596	3905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGAGCCGCTCTTTTC	NA	False	NA	-5	True	AATAAA	-16	NA	67246305	67224600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
ENSMUSG00000022051.16_67224722_67246305_1	chr14	-	1183	6	FSM	ENSMUSG00000022051.16	ENSMUST00000022634.9	3238	6	21	2034	0	0	multi-exon	FALSE	canonical	3	675	junction_1	44.8508639827596	3400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGCTTCCCTAAGCTTGA	NA	False	NA	NA	False	AAAAAG	-37	NA	67246305	67224721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
ENSMUSG00000022051.16_67225025_67246305_1	chr14	-	880	6	FSM	ENSMUSG00000022051.16	ENSMUST00000022634.9	3238	6	21	2337	0	-303	multi-exon	FALSE	canonical	3	675	junction_1	44.8508639827596	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTTGGGGCATTTTACT	NA	False	NA	NA	False	NA	NA	NA	67246305	67225024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
ENSMUSG00000022052.10_67253123_67309903_1	chr14	-	2381	11	NNC	ENSMUSG00000022052.10	novel	2192	11	NA	NA	-10	0	at_least_one_novel_splicesite	TRUE	non_canonical	3	285	junction_10	142.73475400196	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGAATCTGGTTTTCTTT	NA	False	NA	-5	True	AATAAA	-13	NA	67309903	67253122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_67254103_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67276323_67276422_67307683_67307759_67309538_67309797_67309817
ENSMUSG00000022052.10_67253393_67309903_1	chr14	-	2111	11	NNC	ENSMUSG00000022052.10	novel	2192	11	NA	NA	-10	-270	at_least_one_novel_splicesite	FALSE	non_canonical	3	285	junction_10	142.73475400196	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGCTTGTAGCATTCCT	NA	False	NA	-21	True	ATTAAA	-16	NA	67309903	67253392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_67254103_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67276323_67276422_67307683_67307759_67309538_67309797_67309817
ENSMUSG00000022055.8_68321312_68325339_1	chr14	+	2175	4	FSM	ENSMUSG00000022055.8	ENSMUST00000022639.8	3380	4	0	1205	0	-1205	multi-exon	FALSE	canonical	3	158	junction_3	13.589211407093	457	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGCTGTGGTTTTTAC	NA	False	NA	14	True	AATAAA	-28	NA	68321311	68325339	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_68322459_68323422_68323548_68323935_68324256_68324756
ENSMUSG00000022064.11_99337343_99371274_1	chr14	+	1519	6	ISM	ENSMUSG00000022064.11	ENSMUST00000228354.2	2653	11	-38	46601	0	19621	5prime_fragment	FALSE	canonical	3	99	junction_3	7.30479294709987	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAACGAAATCTATGAG	NA	False	NA	NA	False	NA	NA	NA	99337342	99371274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671
ENSMUSG00000022070.8_99283890_99311332_1	chr14	+	2005	12	FSM	ENSMUSG00000022070.8	ENSMUST00000022656.8	2726	12	77	644	0	-643	multi-exon	FALSE	canonical	3	218	junction_1	51.3357124417381	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGCTTGTTTAACAAGTAA	NA	False	NA	17	True	AATAAA	-21	NA	99283889	99311332	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291000_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
ENSMUSG00000022089.10_70375613_70391160_1	chr14	+	3629	21	NIC	ENSMUSG00000022089.10	novel	1767	9	NA	NA	37999	15505	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCGGAAGAGAGACCACTGG	NA	False	NA	NA	False	NA	NA	NA	70375612	70391160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_70376397_70376618_70376825_70376940_70377130_70377208_70377321_70377435_70377583_70377913_70377997_70378316_70378462_70379059_70379297_70379391_70379620_70379808_70379981_70380373_70380538_70380847_70380962_70381036_70381260_70383291_70383412_70388460_70388558_70388722_70388853_70389009_70389125_70389328_70389421_70389821_70389914_70390112_70390207_70391075
ENSMUSG00000022090.11_70401680_70405505_1	chr14	-	901	4	ISM	ENSMUSG00000022090.11	ENSMUST00000153735.8	1578	10	8763	0	-83	0	3prime_fragment	FALSE	canonical	1	1	junction_2	0.942809041582063	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGTGTATTTTCTTCCTTC	NA	False	NA	NA	False	GATAAA	-6	NA	70405505	70401679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_70402243_70403538_70403657_70405109_70405238_70405413
ENSMUSG00000022095.10_70820736_70822115_1	chr14	-	1250	2	NNC	ENSMUSG00000022095.10	novel	4033	17	NA	NA	15160	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCTGACTCTCCCCAGT	NA	False	NA	-7	True	AATAAA	-17	NA	70822115	70820735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_70821096_70821225
ENSMUSG00000022101.7_70873643_70879694_1	chr14	-	1675	5	FSM	ENSMUSG00000022101.7	ENSMUST00000022697.7	1689	5	14	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	15.3195136998535	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGTCCGCTGAAGAAAGG	NA	False	NA	0	True	AATAAA	-16	NA	70879694	70873642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_70874464_70875906_70876014_70876241_70876420_70878971_70879009_70879162
ENSMUSG00000022106.15_73380432_73392653_1	chr14	+	757	4	FSM	ENSMUSG00000022106.15	ENSMUST00000165646.8	591	4	-118	-48	0	1	multi-exon	FALSE	canonical	3	34	junction_2	3.29983164553722	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTCCAACTCACTGTGCT	NA	False	NA	NA	False	AATAAA	-18	NA	73380431	73392653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_73380629_73388972_73389056_73391754_73391849_73392270
ENSMUSG00000022108.9_73599851_73622729_1	chr14	-	1611	6	FSM	ENSMUSG00000022108.9	ENSMUST00000022704.9	1796	6	0	185	0	-185	multi-exon	FALSE	canonical	3	633	junction_1	88.6128658830082	2206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATGAGACTGTGCGTTG	NA	False	NA	-7	True	TATAAA	-14	NA	73622729	73599850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_73600584_73601981_73602133_73603191_73603303_73603760_73603968_73605738_73605868_73622449
ENSMUSG00000022108.9_73600325_73622729_1	chr14	-	1137	6	FSM	ENSMUSG00000022108.9	ENSMUST00000022704.9	1796	6	0	659	0	0	multi-exon	FALSE	canonical	3	633	junction_1	88.6128658830082	1844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAACCTTTCTTTTTTCTA	NA	False	NA	-19	True	ATTAAA	-25	NA	73622729	73600324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_73600584_73601981_73602133_73603191_73603303_73603760_73603968_73605738_73605868_73622449
ENSMUSG00000022109.7_73747465_73755985_1	chr14	+	1301	8	NNC	ENSMUSG00000022109.7	novel	1328	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	122.246655978637	2325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTTTTTTCAATTTTT	NA	False	NA	15	True	AATAAA	-17	NA	73747464	73755985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333_73755598_73755624
ENSMUSG00000022109.7_73747465_73755985_2	chr14	+	1300	8	NNC	ENSMUSG00000022109.7	novel	1328	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	122.246655978637	1513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTTTTTTCAATTTTT	NA	False	NA	15	True	AATAAA	-17	NA	73747464	73755985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333_73755605_73755632
ENSMUSG00000022109.7_73747465_73756289_1	chr14	+	1605	8	NNC	ENSMUSG00000022109.7	novel	1328	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	122.246655978637	2758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTCACAATTAAGTCTCT	NA	False	NA	NA	False	AATAAA	-17	NA	73747464	73756289	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333_73755598_73755624
ENSMUSG00000022109.7_73747465_73756289_2	chr14	+	1632	7	FSM	ENSMUSG00000022109.7	ENSMUST00000022705.7	1328	7	0	-304	0	0	multi-exon	FALSE	canonical	3	317	junction_6	14.7356333046425	2377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTCACAATTAAGTCTCT	NA	False	NA	NA	False	AATAAA	-17	NA	73747464	73756289	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333
ENSMUSG00000022110.14_73790206_73833087_1	chr14	+	1633	11	FSM	ENSMUSG00000022110.14	ENSMUST00000160507.8	2229	11	101	495	0	-136	multi-exon	FALSE	canonical	3	1524	junction_2	74.4957045741565	1616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTACGGTGGTCTCTTTTCT	NA	False	NA	14	True	TATAAA	-17	NA	73790205	73833087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
ENSMUSG00000022110.14_73790206_73833087_2	chr14	+	1628	11	NNC	ENSMUSG00000022110.14	novel	1545	12	NA	NA	0	-136	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	497.739128459879	465	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTACGGTGGTCTCTTTTCT	NA	False	NA	14	True	TATAAA	-17	NA	73790205	73833087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_73790338_73797880_73798062_73806073_73806174_73806306_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
ENSMUSG00000022110.14_73790206_73833228_1	chr14	+	1774	11	FSM	ENSMUSG00000022110.14	ENSMUST00000160507.8	2229	11	101	354	0	5	multi-exon	FALSE	canonical	3	1524	junction_2	74.4957045741565	5389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTATTCTTTAGTATAAA	NA	False	NA	NA	False	AATAAA	-18	NA	73790205	73833228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
ENSMUSG00000022110.14_73790206_73833584_1	chr14	+	2130	11	FSM	ENSMUSG00000022110.14	ENSMUST00000160507.8	2229	11	101	-2	0	2	multi-exon	FALSE	canonical	3	1524	junction_2	74.4957045741565	5881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGTTATGGGTTTTTT	NA	False	NA	13	True	AATAAA	-16	NA	73790205	73833584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
ENSMUSG00000022110.14_73811795_73833087_1	chr14	+	1194	8	NNC	ENSMUSG00000022110.14	novel	435	2	NA	NA	5701	-136	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	588.264448377165	262	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTACGGTGGTCTCTTTTCT	NA	False	NA	14	True	TATAAA	-17	NA	73811794	73833087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_73811932_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
ENSMUSG00000022110.14_73813114_73833087_1	chr14	+	1157	8	NNC	ENSMUSG00000022110.14	novel	435	2	NA	NA	7020	-136	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	572.614982660554	351	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTACGGTGGTCTCTTTTCT	NA	False	NA	14	True	TATAAA	-17	NA	73813113	73833087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_73813214_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
ENSMUSG00000022111.10_101891452_101933561_1	chr14	+	869	8	NIC	ENSMUSG00000022111.10	novel	903	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_1	1518.39837745338	18192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTTGTTTTTGCTAC	139	False	NA	22	True	AATAAA	-18	NA	101891451	101933561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_101891542_101903196_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101928007_101928084_101932594_101932654_101933337
ENSMUSG00000022111.10_101891452_101933561_2	chr14	+	883	8	NIC	ENSMUSG00000022111.10	novel	903	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	1532.99751720448	18889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTTGTTTTTGCTAC	139	False	NA	22	True	AATAAA	-18	NA	101891451	101933561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_101891556_101903196_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101928007_101928084_101932594_101932654_101933337
ENSMUSG00000022111.10_101891452_101933561_3	chr14	+	835	7	NIC	ENSMUSG00000022111.10	novel	903	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	2089.29429872066	12760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTTGTTTTTGCTAC	139	False	NA	22	True	AATAAA	-18	NA	101891451	101933561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_101891556_101903196_101903326_101903947_101904105_101904427_101904514_101928007_101928084_101932594_101932654_101933337
ENSMUSG00000022120.5_104714972_104760089_1	chr14	-	3419	7	NNC	ENSMUSG00000022120.5	novel	3420	6	NA	NA	-8	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	34.5333976833377	218	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTTTTGATGTCATCAT	NA	False	NA	-1	True	AATAAA	-18	NA	104760089	104714971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_104715561_104715582_104717734_104740782_104740872_104743528_104743778_104745374_104745467_104747737_104747874_104759976
ENSMUSG00000022130.11_118358872_118370156_1	chr14	-	730	5	ISM	ENSMUSG00000022130.11	ENSMUST00000022727.10	1682	12	3	8984	0	8965	5prime_fragment	FALSE	canonical	3	141	junction_1	23.054283766797	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTAAAAAATCTGTATTC	253	False	NA	NA	False	AAAAAG	-17	NA	118370156	118358871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_118359274_118364906_118364998_118365634_118365704_118368018_118368086_118370055
ENSMUSG00000022142.9_8138820_8141953_1	chr15	+	454	2	ISM	ENSMUSG00000022142.9	ENSMUST00000230017.2	4391	34	0	44567	0	-22465	5prime_fragment	FALSE	canonical	3	237	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCGTTATTATAAATCTT	NA	False	NA	NA	False	GATAAA	-15	NA	8138819	8141953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_8139087_8141766
ENSMUSG00000022151.17_5215208_5247817_1	chr15	+	1665	5	FSM	ENSMUSG00000022151.17	ENSMUST00000022751.15	1832	5	167	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	41.1430431543414	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTCCTTTTATTCTT	NA	False	NA	31	True	AGTAAA	-31	NA	5215207	5247817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_5215250_5219062_5219285_5237849_5237932_5241479_5241612_5246630
ENSMUSG00000022159.17_52499228_52516811_1	chr14	-	2703	8	FSM	ENSMUSG00000022159.17	ENSMUST00000022765.14	2906	8	191	12	-15	0	multi-exon	FALSE	canonical	3	132	junction_5	9.75202752335772	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTACTTTTATTTCATGT	NA	False	NA	-11	True	ATTAAA	-15	NA	52516811	52499227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098_52506192_52506374_52506458_52512899_52512968_52516370_52516443_52516652
ENSMUSG00000022159.17_52500734_52516759_1	chr14	-	1145	8	FSM	ENSMUSG00000022159.17	ENSMUST00000022765.14	2906	8	243	1518	-4	433	multi-exon	FALSE	canonical	3	132	junction_5	9.75202752335772	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAGAAAGGAATAAATACA	NA	False	NA	NA	False	NA	NA	NA	52516759	52500733	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098_52506192_52506374_52506458_52512899_52512968_52516370_52516443_52516652
ENSMUSG00000022174.9_54472936_54491371_1	chr14	-	688	3	FSM	ENSMUSG00000022174.9	ENSMUST00000022781.8	878	3	190	0	0	0	multi-exon	FALSE	canonical	3	1530	junction_1	8	17959	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGTTCCTTCATGTTTGTG	NA	False	NA	-11	True	ATTAAA	-24	NA	54491371	54472935	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_54473171_54480155_54480326_54491088
ENSMUSG00000022175.10_54706047_54707737_1	chr14	+	1338	3	ISM	ENSMUSG00000022175.10	ENSMUST00000022782.10	4228	7	4453	1217	-223	537	3prime_fragment	FALSE	canonical	3	186	junction_1	24	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTGGTAAATCAGCTGT	NA	False	NA	4	True	AATAAA	-17	NA	54706046	54707737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_54706239_54706492_54706623_54706721
ENSMUSG00000022186.15_4056166_4183462_1	chr15	+	1862	17	FSM	ENSMUSG00000022186.15	ENSMUST00000110690.9	3527	17	301	1364	0	0	multi-exon	FALSE	canonical	3	193	junction_7	29.8008362927955	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACATTTTATTGTGGT	NA	False	NA	NA	False	NA	NA	NA	4056165	4183462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209
ENSMUSG00000022186.15_4056166_4183462_2	chr15	+	1857	17	NNC	ENSMUSG00000022186.15	novel	3527	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	67.3970279389232	108	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACATTTTATTGTGGT	NA	False	NA	NA	False	NA	NA	NA	4056165	4183462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130613_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209
ENSMUSG00000022186.15_4056166_4183586_1	chr15	+	1986	17	FSM	ENSMUSG00000022186.15	ENSMUST00000110690.9	3527	17	301	1240	0	124	multi-exon	FALSE	canonical	3	193	junction_7	29.8008362927955	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAATTTTCATGTGCATT	NA	False	NA	19	True	ATTAAA	-19	NA	4056165	4183586	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209
ENSMUSG00000022186.15_4056166_4184826_1	chr15	+	3226	17	FSM	ENSMUSG00000022186.15	ENSMUST00000110690.9	3527	17	301	0	0	0	multi-exon	FALSE	canonical	3	193	junction_7	29.8008362927955	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAATGTGTGTGTCCTCTTA	NA	False	NA	16	True	AATAAA	-20	NA	4056165	4184826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209
ENSMUSG00000022191.17_12915481_12935376_1	chr15	+	818	7	ISM	ENSMUSG00000022191.17	ENSMUST00000090292.13	4519	35	90532	1	36687	0	3prime_fragment	FALSE	canonical	3	681	junction_1	86.6506395437064	478	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTCTTTGCTACAGAGTA	NA	False	NA	29	True	ATTAAA	-19	NA	12915480	12935376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
ENSMUSG00000022193.8_54851576_54855471_1	chr14	-	916	3	NNC	ENSMUSG00000022193.8	novel	899	3	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	927	17524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGTCCACAGTTATT	8632	False	NA	-17	True	AATAAA	-18	NA	54855471	54851575	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_54851964_54853971_54854279_54855250
ENSMUSG00000022193.8_54851576_54855471_2	chr14	-	876	3	NNC	ENSMUSG00000022193.8	novel	899	3	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	927	13772	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGTCCACAGTTATT	8632	False	NA	-17	True	AATAAA	-18	NA	54855471	54851575	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_54851924_54853971_54854279_54855250
ENSMUSG00000022193.8_54851576_54855471_3	chr14	-	909	3	NNC	ENSMUSG00000022193.8	novel	899	3	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	927	34748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGTCCACAGTTATT	8632	False	NA	-17	True	AATAAA	-18	NA	54855471	54851575	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_54851957_54853971_54854279_54855250
ENSMUSG00000022193.8_54851576_54855471_4	chr14	-	880	3	NNC	ENSMUSG00000022193.8	novel	899	3	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	927	25565	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGTCCACAGTTATT	8632	False	NA	-17	True	AATAAA	-18	NA	54855471	54851575	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_54851939_54853982_54854279_54855250
ENSMUSG00000022193.8_54851576_54855471_5	chr14	-	874	3	NNC	ENSMUSG00000022193.8	novel	899	3	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	927	9486	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGTCCACAGTTATT	8632	False	NA	-17	True	AATAAA	-18	NA	54855471	54851575	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_54851939_54853988_54854279_54855250
ENSMUSG00000022193.8_54851576_54919193_1	chr14	-	1628	4	NNC	ENSMUSG00000022193.8	novel	899	3	NA	NA	-63714	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	876.113006409561	50133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGTCCACAGTTATT	7825	False	NA	-17	True	AATAAA	-18	NA	54919193	54851575	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_54851939_54853971_54854279_54855250_54855515_54918499
ENSMUSG00000022194.16_55120834_55135640_1	chr14	+	915	8	NIC	ENSMUSG00000092232.2	novel	1245	9	NA	NA	-64	46	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	1114.29847978036	529	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATACTGTGGAAGGGGGG	NA	False	NA	48	True	NA	NA	NA	55120833	55135640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_55120964_55121253_55121342_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
ENSMUSG00000022194.16_55120964_55135594_1	chr14	+	937	8	Fusion	ENSMUSG00000022194.16_ENSMUSG00000089682.11	novel	903	5	NA	NA	0	3	multi-exon	FALSE	canonical	3	17	junction_2	1110.05826285775	387	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGATGACCTTGATGGA	NA	False	NA	2	True	NA	NA	NA	55120963	55135594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr14_+_55121162_55121253_55121342_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
ENSMUSG00000022195.8_12821101_12824705_1	chr15	-	838	3	FSM	ENSMUSG00000022195.8	ENSMUST00000228888.2	1971	3	22	1111	-8	-1111	multi-exon	FALSE	canonical	3	264	junction_2	25	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAAAATGTAAGCTTACG	NA	False	NA	NA	False	NA	NA	NA	12824705	12821100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_12821640_12823646_12823793_12824552
ENSMUSG00000022204.10_55253021_55261594_1	chr14	+	1032	10	NIC	ENSMUSG00000022204.10	novel	1200	11	NA	NA	110	0	combination_of_known_splicesites	FALSE	canonical	2	17	junction_9	477.441354423326	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55253020	55261594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55261445
ENSMUSG00000022204.10_55253021_55261594_10	chr14	+	1237	11	NNC	ENSMUSG00000022204.10	novel	1200	11	NA	NA	110	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	454.845907973239	1746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55253020	55261594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55253193_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
ENSMUSG00000022204.10_55253021_55261594_11	chr14	+	1090	11	NNC	ENSMUSG00000022204.10	novel	1200	11	NA	NA	110	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	466.157870254273	1871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55253020	55261594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260670_55260798_55260851_55261445
ENSMUSG00000022204.10_55253021_55261594_12	chr14	+	1084	11	NNC	ENSMUSG00000022204.10	novel	1200	11	NA	NA	110	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	466.157870254273	1331	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55253020	55261594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260798_55260851_55261445
ENSMUSG00000022204.10_55253021_55261594_2	chr14	+	1089	11	NNC	ENSMUSG00000022204.10	novel	1200	11	NA	NA	110	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	462.051685420582	2465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55253020	55261594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258655_55258857_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
ENSMUSG00000022204.10_55253021_55261594_3	chr14	+	1085	11	NNC	ENSMUSG00000022204.10	novel	1200	11	NA	NA	110	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	466.108453044997	5374	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55253020	55261594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259499_55259664_55260506_55260664_55260792_55260851_55261445
ENSMUSG00000022204.10_55253021_55261594_4	chr14	+	1082	11	NNC	ENSMUSG00000022204.10	novel	1200	11	NA	NA	110	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	455.430302022164	1370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55253020	55261594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55253050_55253637_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
ENSMUSG00000022204.10_55253021_55261594_5	chr14	+	1080	11	NNC	ENSMUSG00000022204.10	novel	1200	11	NA	NA	110	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	466.108453044997	1417	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55253020	55261594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259392_55259494_55259664_55260506_55260664_55260792_55260851_55261445
ENSMUSG00000022204.10_55253021_55261594_6	chr14	+	1085	11	NNC	ENSMUSG00000022204.10	novel	1200	11	NA	NA	110	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	461.917622525922	1570	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55253020	55261594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259017_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
ENSMUSG00000022204.10_55253021_55261594_7	chr14	+	1096	11	NNC	ENSMUSG00000022204.10	novel	1200	11	NA	NA	110	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	462.051685420582	2648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55253020	55261594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258655_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
ENSMUSG00000022204.10_55253021_55261594_8	chr14	+	1242	11	NNC	ENSMUSG00000022204.10	novel	1200	11	NA	NA	110	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	455.430302022164	1606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55253020	55261594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55253198_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
ENSMUSG00000022204.10_55253021_55261594_9	chr14	+	1091	11	NNC	ENSMUSG00000022204.10	novel	1200	11	NA	NA	110	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	466.108453044997	7794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55253020	55261594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259408_55259499_55259664_55260506_55260664_55260792_55260851_55261445
ENSMUSG00000022204.10_55253269_55261594_1	chr14	+	1130	11	NNC	ENSMUSG00000022204.10	novel	427	3	NA	NA	358	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	454.845907973239	1616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55253268	55261594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55253334_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
ENSMUSG00000022205.16_11984127_11996098_1	chr15	-	624	5	FSM	ENSMUSG00000022205.16	ENSMUST00000022816.15	3372	5	46	2702	0	0	multi-exon	FALSE	canonical	3	7728	junction_1	236.548620794965	77238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGAGGATTGCTTTGTG	855	False	NA	13	True	ATTAAA	-32	NA	11996098	11984126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874_11993948_11996036
ENSMUSG00000022210.8_55716363_55727797_1	chr14	+	1244	8	FSM	ENSMUSG00000022210.8	ENSMUST00000022821.8	1392	8	148	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	11.5987332172483	761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGCGTGTTTATTTCTC	NA	False	NA	11	True	AATAAA	-26	NA	55716362	55727797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724621_55724716_55724769_55725040_55725176_55725616_55725673_55727275
ENSMUSG00000022216.18_55815913_55818985_1	chr14	+	1010	10	NNC	ENSMUSG00000022216.18	novel	1112	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	99.4612648716903	955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTCTTTATTGTATG	NA	False	NA	14	True	AATAAA	-18	NA	55815912	55818985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55816084_55817213_55817291_55817387_55817499_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
ENSMUSG00000022216.18_55815913_55818985_2	chr14	+	1007	11	NNC	ENSMUSG00000022216.18	novel	1112	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	87.713168908665	1773	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTCTTTATTGTATG	NA	False	NA	14	True	AATAAA	-18	NA	55815912	55818985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55816071_55817051_55817085_55817227_55817291_55817387_55817499_55817579_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
ENSMUSG00000022216.18_55815913_55818985_3	chr14	+	1028	11	NNC	ENSMUSG00000022216.18	novel	1112	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	96.3950724881723	2734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTCTTTATTGTATG	NA	False	NA	14	True	AATAAA	-18	NA	55815912	55818985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55816071_55817051_55817085_55817227_55817291_55817375_55817499_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
ENSMUSG00000022216.18_55815913_55818985_5	chr14	+	1021	11	NNC	ENSMUSG00000022216.18	novel	1112	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	87.713168908665	2044	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTCTTTATTGTATG	NA	False	NA	14	True	AATAAA	-18	NA	55815912	55818985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55816071_55817051_55817085_55817227_55817291_55817387_55817504_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
ENSMUSG00000022216.18_55815913_55818985_6	chr14	+	1088	10	NIC	ENSMUSG00000022216.18	novel	1112	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	234	junction_4	21.3911254241936	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTCTTTATTGTATG	NA	False	NA	14	True	AATAAA	-18	NA	55815912	55818985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_55816071_55817051_55817085_55817227_55817291_55817387_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
ENSMUSG00000022216.18_55815943_55818985_2	chr14	+	979	11	NNC	ENSMUSG00000022216.18	novel	1112	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	87.713168908665	534	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTCTTTATTGTATG	NA	False	NA	14	True	AATAAA	-18	NA	55815942	55818985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55816071_55817051_55817085_55817227_55817291_55817387_55817492_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
ENSMUSG00000022216.18_55815943_55818985_3	chr14	+	996	10	NNC	ENSMUSG00000022216.18	novel	1112	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	99.4612648716903	695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTCTTTATTGTATG	NA	False	NA	14	True	AATAAA	-18	NA	55815942	55818985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55816071_55817184_55817291_55817387_55817499_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
ENSMUSG00000022216.18_55818973_55822759_1	chr14	+	612	6	NNC	ENSMUSG00000022216.18	novel	439	4	NA	NA	768	3773	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCTCTAATCACTCCCC	NA	False	NA	NA	False	NA	NA	NA	55818972	55822759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55819201_55819337_55819433_55819512_55819583_55822135_55822213_55822368_55822412_55822660
ENSMUSG00000022217.15_55815913_55818985_1	chr14	-	1010	11	NNC	ENSMUSG00000022217.15	novel	855	5	NA	NA	896	3060	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1369	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGAGGAGGCGGGGACA	NA	False	NA	NA	False	NA	NA	NA	55818985	55815912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_55816071_55817051_55817085_55817227_55817291_55817387_55817499_55817570_55817617_55817786_55817885_55818051_55818121_55818206_55818269_55818374_55818430_55818508_55818596_55818757
ENSMUSG00000022217.15_55815913_55818985_2	chr14	-	1016	11	NIC	ENSMUSG00000022217.15	novel	855	5	NA	NA	896	3060	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	4351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGAGGAGGCGGGGACA	NA	False	NA	NA	False	NA	NA	NA	55818985	55815912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_55816071_55817051_55817085_55817227_55817291_55817387_55817499_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
ENSMUSG00000022217.15_55815913_55818985_3	chr14	-	1009	10	NNC	ENSMUSG00000022217.15	novel	855	5	NA	NA	896	3060	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	824	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGAGGAGGCGGGGACA	NA	False	NA	NA	False	NA	NA	NA	55818985	55815912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_55816097_55817227_55817291_55817387_55817499_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
ENSMUSG00000022221.15_56022454_56026276_1	chr14	-	2079	9	ISM	ENSMUSG00000022221.15	ENSMUST00000178399.3	1865	10	38	0	-31	0	intron_retention	FALSE	canonical	3	118	junction_2	9.25928587959136	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGTCTGAGGTGTCAA	NA	False	NA	-3	True	AATAAA	-18	NA	56026276	56022453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_56022809_56023318_56023377_56023482_56023816_56024039_56024108_56024213_56024382_56024570_56024618_56024738_56024897_56025280_56025591_56025694
ENSMUSG00000022223.10_56134740_56137668_1	chr14	-	1477	5	FSM	ENSMUSG00000022223.10	ENSMUST00000227139.2	867	5	17	-627	0	0	multi-exon	FALSE	canonical	3	161	junction_3	15.0499169432924	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGGCTTCCGCTGTCTC	NA	False	NA	-6	True	AATAAA	-20	NA	56137668	56134739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103_56137187_56137270
ENSMUSG00000022223.10_56134740_56137668_2	chr14	-	1371	6	FSM	ENSMUSG00000022223.10	ENSMUST00000227163.2	792	6	-27	-552	0	0	multi-exon	FALSE	canonical	2	4	junction_5	71.6753793153549	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGGCTTCCGCTGTCTC	NA	False	NA	-6	True	AATAAA	-20	NA	56137668	56134739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103_56137187_56137270_56137378_56137483
ENSMUSG00000022223.10_56134740_56137668_3	chr14	-	1216	5	NIC	ENSMUSG00000022223.10	novel	1023	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	73.3565777555087	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGGCTTCCGCTGTCTC	NA	False	NA	-6	True	AATAAA	-20	NA	56137668	56134739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_56135470_56135699_56135935_56136640_56136763_56137270_56137378_56137646
ENSMUSG00000022223.10_56134740_56137668_4	chr14	-	1299	6	FSM	ENSMUSG00000022223.10	ENSMUST00000227032.2	1023	6	0	-276	0	0	multi-exon	FALSE	canonical	3	22	junction_2	63.0441115410472	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGGCTTCCGCTGTCTC	NA	False	NA	-6	True	AATAAA	-20	NA	56137668	56134739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_56135470_56135699_56135935_56136640_56136763_56137103_56137187_56137270_56137378_56137646
ENSMUSG00000022223.10_56134740_56137668_5	chr14	-	1125	5	NIC	ENSMUSG00000022223.10	novel	1255	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	74.2866071374915	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGGCTTCCGCTGTCTC	NA	False	NA	-6	True	AATAAA	-20	NA	56137668	56134739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_56135470_56135699_56135844_56136640_56136763_56137270_56137378_56137646
ENSMUSG00000022241.7_11383804_11387431_1	chr15	-	713	4	ISM	ENSMUSG00000022241.7	ENSMUST00000226944.2	859	6	665	-287	0	287	3prime_fragment	FALSE	canonical	3	3108	junction_3	88.3176086632785	1257	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAGGAGAAAACAGAGTT	NA	False	NA	-21	True	AATAAA	-16	NA	11387431	11383803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348
ENSMUSG00000022241.7_11392346_11399704_1	chr15	-	737	6	ISM	ENSMUSG00000022241.7	ENSMUST00000228814.2	4093	17	-17	9959	-17	-1048	5prime_fragment	FALSE	canonical	1	53	junction_3	1226.90136522868	118	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGGAAACATTACTAGAAA	NA	False	NA	NA	False	ATTAAA	-33	NA	11399704	11392345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_11392436_11392872_11392995_11393242_11393363_11394309_11394501_11397266_11397348_11399571
ENSMUSG00000022244.8_10981842_10995693_2	chr15	+	1558	5	FSM	ENSMUSG00000022244.8	ENSMUST00000070877.7	2577	5	0	1019	0	600	multi-exon	FALSE	canonical	3	110	junction_2	9.36416040016402	740	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCAGTGGTTTTAAGTT	49	False	NA	35	True	AATAAA	-45	NA	10981841	10995693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_10982140_10983435_10983580_10984771_10984933_10988844_10989032_10994925
ENSMUSG00000022247.13_10476267_10486002_1	chr15	-	1231	10	FSM	ENSMUSG00000022247.13	ENSMUST00000022855.12	2664	10	31	1402	-7	-1402	multi-exon	FALSE	canonical	3	2074	junction_1	190.855449147086	12135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTACTTTATTCTTTTC	NA	False	NA	-11	True	AATAAA	-14	NA	10486002	10476266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
ENSMUSG00000022248.15_10486135_10493478_1	chr15	+	1186	6	FSM	ENSMUSG00000022248.15	ENSMUST00000022856.15	1514	6	31	297	0	29	multi-exon	FALSE	canonical	3	345	junction_1	183.88039590995	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCTGGCTGTCCTGGAAC	35	False	NA	NA	False	NA	NA	NA	10486134	10493478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_10486351_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239
ENSMUSG00000022248.15_10486135_10493763_1	chr15	+	1578	6	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	0	3	intron_retention	FALSE	canonical	0	0	junction_5	316.528039832177	1332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	35	False	NA	15	True	AATAAA	-20	NA	10486134	10493763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
ENSMUSG00000022248.15_10486135_10493763_2	chr15	+	1407	7	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	324.625639091486	1015	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	35	False	NA	15	True	AATAAA	-20	NA	10486134	10493763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_10486368_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
ENSMUSG00000022248.15_10486135_10493763_4	chr15	+	1618	6	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	0	3	intron_retention	FALSE	canonical	0	0	junction_5	370.099121857915	1130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	35	False	NA	15	True	AATAAA	-20	NA	10486134	10493763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_10486803_10488075_10488185_10490341_10490601_10492850_10492990_10493239_10493477_10493557
ENSMUSG00000022248.15_10486166_10493763_1	chr15	+	1331	5	NIC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	15	junction_2	353.147543528197	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	66	False	NA	15	True	AATAAA	-20	NA	10486165	10493763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_10486351_10486538_10486803_10490341_10490601_10492850_10492950_10493239
ENSMUSG00000022255.17_34082840_34134501_1	chr15	+	1670	9	ISM	ENSMUSG00000022255.17	ENSMUST00000022865.17	6919	12	-25	11269	0	11	5prime_fragment	FALSE	canonical	3	477	junction_6	54.812749429307	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAAAAGAAGAAGCAAG	27	False	NA	NA	False	AAAAAG	-41	NA	34082839	34134501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34123813_34123913_34131309_34131435_34134436
ENSMUSG00000022257.5_34238313_34284448_1	chr15	+	1755	7	NNC	ENSMUSG00000022257.5	novel	1902	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	159.085930658036	1500	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCGTGGCTCCGCTGACT	129	False	NA	NA	False	ATTAAA	-22	NA	34238312	34284448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_34238569_34258826_34258939_34272489_34272564_34273373_34273497_34276289_34276381_34277577_34277674_34283445
ENSMUSG00000022261.7_32920869_33032759_1	chr15	+	1205	5	FSM	ENSMUSG00000022261.7	ENSMUST00000022871.7	3527	5	0	2322	0	-2322	multi-exon	FALSE	canonical	3	85	junction_1	11.0227038425243	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTTTGTTATCTGTTTTG	26	False	NA	NA	False	AATAAA	-22	NA	32920868	33032759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_32921452_33017247_33017360_33023794_33023932_33028192_33028329_33032522
ENSMUSG00000022261.7_32920869_33033781_1	chr15	+	2227	5	FSM	ENSMUSG00000022261.7	ENSMUST00000022871.7	3527	5	0	1300	0	-1300	multi-exon	FALSE	canonical	3	85	junction_1	11.0227038425243	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTTATAAATTTTG	26	False	NA	NA	False	AATAAA	-23	NA	32920868	33033781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_32921452_33017247_33017360_33023794_33023932_33028192_33028329_33032522
ENSMUSG00000022261.7_32921234_33032759_1	chr15	+	840	5	FSM	ENSMUSG00000022261.7	ENSMUST00000022871.7	3527	5	365	2322	365	-2322	multi-exon	FALSE	canonical	3	85	junction_1	11.0227038425243	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTTTGTTATCTGTTTTG	120	False	NA	NA	False	AATAAA	-22	NA	32921233	33032759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_32921452_33017247_33017360_33023794_33023932_33028192_33028329_33032522
ENSMUSG00000022272.18_25774073_25779888_1	chr15	+	889	5	ISM	ENSMUSG00000022272.18	ENSMUST00000125667.3	1030	7	0	1255	0	28	5prime_fragment	FALSE	canonical	3	400	junction_1	123.152344679263	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAAAGGTATGTGCTCTG	-10	True	NA	32	True	NA	NA	NA	25774072	25779888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_25774395_25776106_25776232_25776403_25776519_25778166_25778274_25779668
ENSMUSG00000022272.18_25774281_25779888_1	chr15	+	681	5	ISM	ENSMUSG00000022272.18	ENSMUST00000125667.3	1030	7	208	1255	208	28	5prime_fragment	FALSE	canonical	3	400	junction_1	123.152344679263	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAAAGGTATGTGCTCTG	33	False	NA	32	True	NA	NA	NA	25774280	25779888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_25774395_25776106_25776232_25776403_25776519_25778166_25778274_25779668
ENSMUSG00000022283.16_36596268_36609217_1	chr15	-	2454	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	0	363	0	0	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	3296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGAAAAAAAACATTGCAAA	377	False	NA	NA	False	AAGAAA	-32	NA	36609217	36596267	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ENSMUSG00000022285.18_36771813_36793812_1	chr15	-	1982	6	NNC	ENSMUSG00000022285.18	novel	2285	6	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1621.57947692982	2686	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAAAAAACCGCT	709	False	NA	NA	False	NA	NA	NA	36793812	36771812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790933_36791233_36793722
ENSMUSG00000022285.18_36771813_36794508_1	chr15	-	2018	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110361.8	2285	6	267	0	267	0	multi-exon	FALSE	canonical	3	223	junction_5	1591.90916826306	1710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAAAAAACCGCT	13	True	NA	NA	False	NA	NA	NA	36794508	36771812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36794388
ENSMUSG00000022285.18_36771948_36794488_1	chr15	-	1863	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110361.8	2285	6	287	135	287	0	multi-exon	FALSE	canonical	3	223	junction_5	1591.90916826306	992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCAACTACTTTTCTCT	-6	True	NA	-12	True	NA	NA	NA	36794488	36771947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36794388
ENSMUSG00000022286.17_37348014_37363807_1	chr15	+	2977	3	ISM	ENSMUSG00000022286.17	ENSMUST00000161933.2	3617	9	29367	-1	12033	1	3prime_fragment	FALSE	canonical	3	68	junction_1	5	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAAACAGCTCTCTAGTAC	248	False	NA	14	True	AATAAA	-15	NA	37348013	37363807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_37348099_37358613_37358679_37360980
ENSMUSG00000022292.17_37927202_37961218_1	chr15	-	1426	9	FSM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	129	3006	-45	287	multi-exon	FALSE	canonical	3	32	junction_4	8.71779788708135	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATTTAATTTTATCTAAAT	7237	False	NA	NA	False	TATAAA	-14	NA	37961218	37927201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_37927642_37929281_37929396_37931845_37931951_37937459_37937594_37944741_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
ENSMUSG00000022292.17_37943571_37961347_2	chr15	-	1933	5	ISM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	0	19375	0	1721	5prime_fragment	FALSE	canonical	3	46	junction_2	5.71729831301464	887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAACTGAGTCCAGATGG	7108	False	NA	NA	False	NA	NA	NA	37961347	37943570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
ENSMUSG00000022295.9_38662188_38691971_1	chr15	+	1248	12	NIC	ENSMUSG00000022295.9	novel	2071	13	NA	NA	0	-716	combination_of_known_splicesites	FALSE	canonical	3	129	junction_8	403.492951590819	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGCCTTGTGTTGGTGT	195	False	NA	14	True	AGTAAA	-20	NA	38662187	38691971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687259_38687354_38689368_38689467_38690776_38690904_38691855
ENSMUSG00000022295.9_38662188_38692690_1	chr15	+	1967	12	NIC	ENSMUSG00000022295.9	novel	2071	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	129	junction_8	403.492951590819	2509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGCTAGTCATTTATTTT	195	False	NA	31	True	AATAAA	-17	NA	38662187	38692690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687259_38687354_38689368_38689467_38690776_38690904_38691855
ENSMUSG00000022300.11_38976260_39010251_1	chr15	+	1546	11	NNC	ENSMUSG00000022300.11	novel	1551	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	239.956579405525	3138	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCAGTTGTGTGTTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	38976259	39010251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_38976447_38982105_38982306_38982739_38982848_38986607_38986698_38987723_38987880_38991284_38991363_38993610_38993694_39001478_39001644_39007022_39007154_39008485_39008650_39010067
ENSMUSG00000022300.11_38976260_39010251_2	chr15	+	1548	11	NNC	ENSMUSG00000022300.11	novel	1551	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	312.753721001046	2537	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCAGTTGTGTGTTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	38976259	39010251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_38976447_38982112_38982310_38982739_38982848_38986607_38986698_38987723_38987880_38991284_38991363_38993610_38993694_39001478_39001644_39007017_39007154_39008485_39008650_39010067
ENSMUSG00000022300.11_38976260_39010251_3	chr15	+	1540	11	NNC	ENSMUSG00000022300.11	novel	1551	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	234.723859034398	3098	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCAGTTGTGTGTTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	38976259	39010251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_38976447_38982105_38982295_38982739_38982848_38986607_38986698_38987723_38987880_38991284_38991363_38993610_38993694_39001478_39001644_39007017_39007154_39008485_39008650_39010067
ENSMUSG00000022300.11_38976260_39010251_4	chr15	+	1544	11	NNC	ENSMUSG00000022300.11	novel	1551	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	242.714564869931	2110	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCAGTTGTGTGTTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	38976259	39010251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_38976447_38982105_38982306_38982739_38982848_38986614_38986698_38987723_38987880_38991284_38991363_38993610_38993694_39001478_39001644_39007017_39007154_39008485_39008650_39010067
ENSMUSG00000022304.14_39646093_39648265_1	chr15	-	714	2	ISM	ENSMUSG00000022304.14	ENSMUST00000110306.9	2110	10	72601	0	8382	0	3prime_fragment	FALSE	canonical	3	216	junction_1	0	1345	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGTGTCTGAGTTCCAT	NA	False	NA	NA	False	AATAAA	-22	NA	39648265	39646092	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_39646506_39647964
ENSMUSG00000022304.14_39646101_39648265_1	chr15	-	706	2	ISM	ENSMUSG00000022304.14	ENSMUST00000110306.9	2110	10	72601	8	8382	0	3prime_fragment	FALSE	canonical	3	216	junction_1	0	1286	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTGTATTCTAGTGTCTG	NA	False	NA	NA	False	AATAAA	-14	NA	39648265	39646100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_39646506_39647964
ENSMUSG00000022312.12_51649954_51728879_1	chr15	-	1250	8	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	1	59	junction_1	653.585589229888	18619	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGTGTATTTATGGTG	NA	False	NA	-12	True	AATAAA	-24	NA	51728879	51649953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_51650217_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
ENSMUSG00000022312.12_51649954_51728879_2	chr15	-	1250	8	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	3	182	junction_6	605.147173868321	18889	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGTGTATTTATGGTG	NA	False	NA	-12	True	AATAAA	-24	NA	51728879	51649953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662751_51705863_51706021_51728721
ENSMUSG00000022312.12_51650078_51728879_1	chr15	-	1131	8	FSM	ENSMUSG00000022312.12	ENSMUST00000022925.10	1295	8	40	124	-29	0	multi-exon	FALSE	canonical	3	1820	junction_5	77.7200628104822	8966	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCACAGAGTGCACTTGGA	NA	False	NA	-136	True	AAGAAA	-43	NA	51728879	51650077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
ENSMUSG00000022313.11_51740874_51746080_1	chr15	+	942	3	FSM	ENSMUSG00000022313.11	ENSMUST00000137116.3	2921	3	49	1930	0	0	multi-exon	FALSE	canonical	3	321	junction_1	13	1528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCATCTTCAGTTGTTG	NA	False	NA	22	True	AGTAAA	-19	NA	51740873	51746080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_51741107_51744411_51744587_51745546
ENSMUSG00000022313.11_51740874_51746080_2	chr15	+	930	3	NNC	ENSMUSG00000022313.11	novel	2921	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	160.5	1457	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCATCTTCAGTTGTTG	NA	False	NA	22	True	AGTAAA	-19	NA	51740873	51746080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_51741107_51744411_51744575_51745546
ENSMUSG00000022314.11_51826000_51855143_1	chr15	-	3592	14	FSM	ENSMUSG00000022314.11	ENSMUST00000022927.11	3956	14	0	364	0	-364	multi-exon	FALSE	canonical	3	565	junction_13	70.6746022859982	1291	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTGGAACATACTCAGT	NA	False	NA	-21	True	AATAAA	-20	NA	51855143	51825999	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924_51846100_51854942
ENSMUSG00000022322.9_4785976_4814941_1	chr8	-	1590	10	ISM	ENSMUSG00000022322.9	ENSMUST00000022945.9	2156	13	14613	0	14535	0	3prime_fragment	TRUE	canonical	3	204	junction_9	42.166337284616	838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTGAAATGTGGATT	3783	False	NA	-5	True	TATAAA	-15	NA	4814941	4785975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_4786408_4789124_4789267_4789594_4789682_4791847_4791967_4794446_4794579_4798704_4798826_4799291_4799461_4799551_4799786_4804219_4804313_4814880
ENSMUSG00000022322.9_4814612_4829554_1	chr8	-	896	4	ISM	ENSMUSG00000022322.9	ENSMUST00000208856.2	2365	12	-3	28382	0	0	5prime_fragment	FALSE	canonical	3	272	junction_2	23.7205958328763	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAAAGTTGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4829554	4814611	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_4815090_4817906_4818023_4818143_4818312_4829420
ENSMUSG00000022323.12_34484167_34495401_1	chr15	-	999	6	NNC	ENSMUSG00000022323.12	novel	1004	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	112.06890737399	1373	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTTTTAATTTTGTTC	NA	False	NA	-10	True	AATAAA	-21	NA	34495401	34484166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34484677_34485745_34485802_34486756_34486826_34487887_34487943_34488719_34488826_34495198
ENSMUSG00000022329.16_34875642_35155837_1	chr15	-	2799	11	FSM	ENSMUSG00000022329.16	ENSMUST00000018476.14	2914	11	115	0	-22	0	multi-exon	FALSE	canonical	3	204	junction_2	35.5343495789637	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCGTTGTTGTTATTGT	NA	False	NA	2	True	AATAAA	-21	NA	35155837	34875641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073368_35099579_35099695_35114674_35114804_35115710_35115792_35155672
ENSMUSG00000022329.16_35114142_35155837_1	chr15	-	599	4	NNC	ENSMUSG00000022329.16	novel	2914	11	NA	NA	-22	-41517	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	124.022399410572	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAGATTTCATTTTTTTG	NA	False	NA	NA	False	AATATA	-25	NA	35155837	35114141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_35114366_35114674_35114804_35115710_35115792_35155672
ENSMUSG00000022330.6_35296244_35303451_1	chr15	+	1806	4	NIC	ENSMUSG00000022330.6	novel	1724	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	14.8548533034381	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTCTTGAGATTCATCT	117	False	NA	13	True	AATAAA	-16	NA	35296243	35303451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_35296614_35300334_35301102_35302057_35302158_35302882
ENSMUSG00000022336.4_43113570_43146115_1	chr15	-	1390	13	FSM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	0	116	0	0	multi-exon	TRUE	canonical	3	2495	junction_1	136.260065887095	8292	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAATAAGTGAAAGACACAG	2663	False	NA	-138	True	ATTAAA	-25	NA	43146115	43113569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
ENSMUSG00000022337.8_43340637_43391159_1	chr15	+	1211	11	NNC	ENSMUSG00000022337.8	novel	1231	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	228.935995422301	3645	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATGAAAATTCTAGTTTC	NA	False	NA	10	True	AATAAA	-20	NA	43340636	43391159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_43340722_43355565_43355680_43358135_43358201_43358559_43358646_43360456_43360515_43371048_43371127_43371257_43371318_43374210_43374293_43375095_43375207_43377140_43377246_43390792
ENSMUSG00000022338.9_44291488_44299251_1	chr15	+	618	5	FSM	ENSMUSG00000022338.9	ENSMUST00000060652.5	3000	5	-19	2401	0	0	multi-exon	FALSE	canonical	3	627	junction_1	138.867742834684	7476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCATGAATGAGTTTCAAT	9616	False	NA	1	True	AATAAA	-3	NA	44291487	44299251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297294_44297370_44299007
ENSMUSG00000022338.9_44291543_44299263_1	chr15	+	575	5	FSM	ENSMUSG00000022338.9	ENSMUST00000060652.5	3000	5	36	2389	0	0	multi-exon	FALSE	canonical	3	627	junction_1	138.867742834684	6613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAATTTTTTTATTTTG	9671	False	NA	13	True	AATAAA	-15	NA	44291542	44299263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297294_44297370_44299007
ENSMUSG00000022339.10_44482987_44504423_1	chr15	+	1579	7	FSM	ENSMUSG00000022339.10	ENSMUST00000226165.2	1931	7	151	201	0	1	multi-exon	FALSE	canonical	2	3	junction_1	30.3076814612328	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTGTATATCCTTATTT	NA	False	NA	13	True	ATTAAA	-23	NA	44482986	44504423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_44483304_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
ENSMUSG00000022359.11_58004773_58022050_1	chr15	+	1242	5	NIC	ENSMUSG00000022359.11	novel	1383	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	21.3131414859471	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTTTTGAAGAATCTG	2660	False	NA	27	True	AATAAA	-17	NA	58004772	58022050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_58004978_58011729_58011838_58014001_58014053_58016975_58017101_58021297
ENSMUSG00000022359.11_58004773_58022050_2	chr15	+	1109	4	FSM	ENSMUSG00000022359.11	ENSMUST00000226889.2	394	4	-60	-655	0	0	multi-exon	FALSE	canonical	0	0	junction_3	30.9228430488243	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTTTTGAAGAATCTG	2660	False	NA	27	True	AATAAA	-17	NA	58004772	58022050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58021297
ENSMUSG00000022364.15_57816941_57833458_1	chr15	+	1217	8	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	-4868	1	combination_of_known_junctions	FALSE	canonical	3	77	junction_4	96.5401470891774	1313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	9	True	AATAAA	-16	NA	57816940	57833458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57825464_57825660_57827199_57827321_57831304_57831401_57833119
ENSMUSG00000022364.15_57827094_57833458_1	chr15	+	565	2	NNC	ENSMUSG00000022364.15	novel	914	6	NA	NA	5285	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1302	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	9	True	AATAAA	-16	NA	57827093	57833458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_57827321_57833120
ENSMUSG00000022364.15_57827094_57833458_2	chr15	+	662	3	ISM	ENSMUSG00000022364.15	ENSMUST00000161329.2	914	6	5285	5	5285	1	3prime_fragment	FALSE	canonical	3	284	junction_1	37.5	1823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	9	True	AATAAA	-16	NA	57827093	57833458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_57827321_57831304_57831401_57833119
ENSMUSG00000022364.15_57827199_57833458_1	chr15	+	557	3	ISM	ENSMUSG00000022364.15	ENSMUST00000161329.2	914	6	5390	5	5390	1	3prime_fragment	FALSE	canonical	3	284	junction_1	37.5	1092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	9	True	AATAAA	-16	NA	57827198	57833458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_57827321_57831304_57831401_57833119
ENSMUSG00000022364.15_57831752_57833458_1	chr15	+	414	2	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	9943	1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	1034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	9	True	AATAAA	-16	NA	57831751	57833458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_57831827_57833119
ENSMUSG00000022365.7_57733932_57755862_1	chr15	-	2159	8	FSM	ENSMUSG00000022365.7	ENSMUST00000022993.7	3175	8	-18	1034	-18	-1034	multi-exon	FALSE	canonical	3	365	junction_5	42.5977866628236	810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGCTTTATATAGTTACT	NA	False	NA	-18	True	AATAAA	-16	NA	57755862	57733931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_57735303_57738892_57739004_57740813_57740867_57741880_57741977_57742444_57742472_57743395_57743461_57746830_57746943_57755538
ENSMUSG00000022365.7_57734916_57755844_1	chr15	-	1157	8	FSM	ENSMUSG00000022365.7	ENSMUST00000022993.7	3175	8	0	2018	0	143	multi-exon	FALSE	canonical	3	365	junction_5	42.5977866628236	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATTTTCTGGTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	57755844	57734915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_57735303_57738892_57739004_57740813_57740867_57741880_57741977_57742444_57742472_57743395_57743461_57746830_57746943_57755538
ENSMUSG00000022365.7_57735059_57755862_1	chr15	-	1032	8	FSM	ENSMUSG00000022365.7	ENSMUST00000022993.7	3175	8	-18	2161	-18	0	multi-exon	FALSE	canonical	3	365	junction_5	42.5977866628236	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACACTGAATGTAGTCTT	NA	False	NA	NA	False	NA	NA	NA	57755862	57735058	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_57735303_57738892_57739004_57740813_57740867_57741880_57741977_57742444_57742472_57743395_57743461_57746830_57746943_57755538
ENSMUSG00000022370.14_55397490_55420709_1	chr15	-	780	7	NNC	ENSMUSG00000022370.14	novel	1223	7	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	369.328670247338	9357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	False	NA	0	True	AATAAA	-20	NA	55420709	55397489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55411537_55411620_55418711_55418840_55420653
ENSMUSG00000022370.14_55397490_55420709_2	chr15	-	780	7	NNC	ENSMUSG00000022370.14	novel	1223	7	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	369.328670247338	9397	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	False	NA	0	True	AATAAA	-20	NA	55420709	55397489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406773_55411537_55411632_55418715_55418840_55420653
ENSMUSG00000022370.14_55397490_55420709_3	chr15	-	775	7	NNC	ENSMUSG00000022370.14	novel	1223	7	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	362.091340532867	8300	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	False	NA	0	True	AATAAA	-20	NA	55420709	55397489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_55397734_55402425_55402535_55403518_55403606_55406719_55406781_55411537_55411632_55418715_55418840_55420653
ENSMUSG00000022370.14_55397490_55420709_4	chr15	-	756	6	NNC	ENSMUSG00000022370.14	novel	1223	7	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	398.381425269803	903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	False	NA	0	True	AATAAA	-20	NA	55420709	55397489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_55397734_55402425_55402548_55403518_55403606_55411508_55411632_55418715_55418840_55420653
ENSMUSG00000022370.14_55420991_55429047_1	chr15	-	1489	5	NIC	ENSMUSG00000022370.14	novel	1223	7	NA	NA	-7903	-8141	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCTCAAAAGAGCCGCGC	NA	False	NA	NA	False	NA	NA	NA	55429047	55420990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_55421134_55421896_55421978_55426098_55426173_55426332_55426485_55428008
ENSMUSG00000022370.14_55420991_55489819_1	chr15	-	2957	22	NIC	ENSMUSG00000022370.14	novel	1223	7	NA	NA	-68675	-8141	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCTCAAAAGAGCCGCGC	NA	False	NA	NA	False	NA	NA	NA	55489819	55420990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_55421134_55421896_55421978_55426098_55426173_55426332_55426485_55428008_55428068_55429589_55429735_55430573_55430692_55432441_55432556_55434690_55434786_55436291_55436365_55440843_55440962_55449706_55449881_55452051_55452160_55460737_55460900_55466579_55466698_55470039_55470196_55474333_55474430_55480877_55481145_55483033_55483272_55484018_55484133_55488786_55488853_55489533
ENSMUSG00000022390.12_81629258_81653682_1	chr15	+	881	4	ISM	ENSMUSG00000022390.12	ENSMUST00000229044.2	4618	15	0	14963	0	-2971	5prime_fragment	FALSE	canonical	3	266	junction_2	6.68331255192114	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGGTTTGAGTTTTTTAA	1948	False	NA	NA	False	NA	NA	NA	81629257	81653682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_81629548_81652195_81652255_81653033_81653068_81653184
ENSMUSG00000022391.17_81608444_81614072_1	chr15	-	550	2	ISM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	132	19990	9	-5453	5prime_fragment	FALSE	canonical	3	698	junction_1	0	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAAACAGTGTCCTGGTC	NA	False	NA	NA	False	NA	NA	NA	81614072	81608443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_81608834_81613912
ENSMUSG00000022394.15_81548155_81569618_1	chr15	+	1906	15	ISM	ENSMUSG00000022394.15	ENSMUST00000172748.8	3368	17	-2	2898	0	1567	5prime_fragment	FALSE	canonical	3	640	junction_8	41.3633106676407	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGAAGAAACAGTTTG	NA	False	NA	NA	False	NA	NA	NA	81548154	81569618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581
ENSMUSG00000022394.15_81570366_81578229_1	chr15	+	1099	4	NIC	ENSMUSG00000022394.15	novel	548	2	NA	NA	143	5713	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGGCTCCAGCTCCGCGA	NA	False	NA	NA	False	NA	NA	NA	81570365	81578229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_81570604_81576308_81576508_81577187_81577355_81577734
ENSMUSG00000022400.10_81350545_81355418_1	chr15	+	452	3	FSM	ENSMUSG00000022400.10	ENSMUST00000230219.2	555	3	0	103	0	-103	multi-exon	FALSE	canonical	3	4160	junction_1	326.5	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGAGTTGACCTTTCCT	NA	False	NA	NA	False	ATTAAA	-22	NA	81350544	81355418	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_81350652_81352355_81352435_81355152
ENSMUSG00000022400.10_81350545_81359462_1	chr15	+	448	4	NIC	ENSMUSG00000022400.10	novel	1675	5	NA	NA	0	-125	combination_of_known_splicesites	FALSE	canonical	3	12	junction_2	2043.41239651281	1994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTTGCTGTTTCATGTA	NA	False	NA	15	True	AATAAA	-15	NA	81350544	81359462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_81350652_81352355_81352435_81358043_81358130_81359286
ENSMUSG00000022400.10_81350545_81359462_2	chr15	+	510	5	NNC	ENSMUSG00000022400.10	novel	1675	5	NA	NA	0	-125	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1960.0642049433	47728	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTTGCTGTTTCATGTA	NA	False	NA	15	True	AATAAA	-15	NA	81350544	81359462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_81350652_81352355_81352435_81355152_81355215_81358043_81358130_81359286
ENSMUSG00000022400.10_81350545_81359462_3	chr15	+	481	5	NNC	ENSMUSG00000022400.10	novel	1675	5	NA	NA	0	-125	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_4	1958.083549673	17253	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTTGCTGTTTCATGTA	NA	False	NA	15	True	AATAAA	-15	NA	81350544	81359462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_81350652_81352355_81352435_81355152_81355224_81358043_81358092_81359286
ENSMUSG00000022400.10_81350545_81359462_4	chr15	+	501	5	NNC	ENSMUSG00000022400.10	novel	1675	5	NA	NA	0	-125	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1961.52343536854	44172	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTTGCTGTTTCATGTA	NA	False	NA	15	True	AATAAA	-15	NA	81350544	81359462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_81350652_81352355_81352435_81355152_81355224_81358043_81358130_81359304
ENSMUSG00000022400.10_81350842_81359462_1	chr15	+	526	5	FSM	ENSMUSG00000022400.10	ENSMUST00000230062.2	651	5	0	125	0	-125	multi-exon	FALSE	canonical	3	348	junction_1	1851.90407081468	4097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTTGCTGTTTCATGTA	NA	False	NA	15	True	AATAAA	-15	NA	81350841	81359462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_81350956_81352355_81352435_81355152_81355224_81358043_81358130_81359286
ENSMUSG00000022400.10_81350842_81359924_1	chr15	+	988	5	FSM	ENSMUSG00000022400.10	ENSMUST00000230062.2	651	5	0	-337	0	151	multi-exon	FALSE	canonical	3	348	junction_1	1851.90407081468	4786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGTTTGGACAGTTTGC	NA	False	NA	12	True	AATAAA	-25	NA	81350841	81359924	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_81350956_81352355_81352435_81355152_81355224_81358043_81358130_81359286
ENSMUSG00000022400.10_81350842_81360570_1	chr15	+	1634	5	FSM	ENSMUSG00000022400.10	ENSMUST00000230062.2	651	5	0	-983	0	0	multi-exon	FALSE	canonical	3	348	junction_1	1851.90407081468	5413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGTGTCATTTTCACC	NA	False	NA	17	True	NA	NA	NA	81350841	81360570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_81350956_81352355_81352435_81355152_81355224_81358043_81358130_81359286
ENSMUSG00000022400.10_81350996_81359462_1	chr15	+	567	5	NIC	ENSMUSG00000022400.10	novel	218	2	NA	NA	0	-125	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	2001.86300730095	2679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTTGCTGTTTCATGTA	NA	False	NA	15	True	AATAAA	-15	NA	81350995	81359462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_81351151_81352355_81352435_81355152_81355224_81358043_81358130_81359286
ENSMUSG00000022403.16_81249245_81283884_1	chr15	-	1611	12	FSM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	360	1375	-89	406	multi-exon	FALSE	canonical	3	2366	junction_3	110.211442162196	8631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACGGTTCCTGAAGTATC	NA	False	NA	-30	True	AATAAA	-25	NA	81283884	81249244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
ENSMUSG00000022403.16_81249245_81283884_2	chr15	-	1610	12	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-89	406	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	740.252882857279	8585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACGGTTCCTGAAGTATC	NA	False	NA	-30	True	AATAAA	-25	NA	81283884	81249244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262197_81267176_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
ENSMUSG00000022404.9_81203112_81244982_1	chr15	-	1612	9	NNC	ENSMUSG00000022404.9	novel	1724	9	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_6	109.401496790492	1479	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAAGTTGCTCTTGATT	6879	False	NA	-10	True	AATAAA	-27	NA	81244982	81203111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136_81222208_81224174_81224242_81228301_81228363_81244877
ENSMUSG00000022404.9_81203582_81244982_1	chr15	-	1223	9	FSM	ENSMUSG00000022404.9	ENSMUST00000023040.9	1724	9	31	470	-4	230	multi-exon	FALSE	canonical	3	302	junction_6	19.7638400873919	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAGTTTGTGGGTGTTCA	6879	False	NA	NA	False	NA	NA	NA	81244982	81203581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136_81222289_81224174_81224242_81228301_81228363_81244877
ENSMUSG00000022407.11_80832705_80853014_1	chr15	+	1564	13	FSM	ENSMUSG00000022407.11	ENSMUST00000023043.10	3711	13	14	2133	0	58	multi-exon	FALSE	canonical	3	932	junction_8	68.052471585453	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTTCTGCGGCACT	NA	False	NA	19	True	NA	NA	NA	80832704	80853014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
ENSMUSG00000022407.11_80832705_80853335_1	chr15	+	1885	13	FSM	ENSMUSG00000022407.11	ENSMUST00000023043.10	3711	13	14	1812	0	15	multi-exon	FALSE	canonical	3	932	junction_8	68.052471585453	1770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGTACATTAAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	80832704	80853335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
ENSMUSG00000022407.11_80832705_80853505_1	chr15	+	2055	13	FSM	ENSMUSG00000022407.11	ENSMUST00000023043.10	3711	13	14	1642	0	185	multi-exon	FALSE	canonical	3	932	junction_8	68.052471585453	1867	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCTGTTTTATATTT	NA	False	NA	3	True	NA	NA	NA	80832704	80853505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
ENSMUSG00000022415.13_79975545_79997642_1	chr15	+	759	4	NNC	ENSMUSG00000022415.13	novel	819	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_2	654.950888744085	2878	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGCCTGTGTGGATTA	NA	False	NA	18	True	NA	NA	NA	79975544	79997642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_79975694_79994644_79994883_79995849_79995946_79997366
ENSMUSG00000022415.13_79975545_79998205_1	chr15	+	1372	4	FSM	ENSMUSG00000022415.13	ENSMUST00000009728.13	819	4	10	-563	0	563	multi-exon	FALSE	canonical	3	1267	junction_2	72.7232195840274	5334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTCATTCATTCATTCA	NA	False	NA	8	True	NA	NA	NA	79975544	79998205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_79975694_79994644_79994883_79995799_79995946_79997366
ENSMUSG00000022420.17_79645654_79658629_1	chr15	-	1500	5	ISM	ENSMUSG00000022420.17	ENSMUST00000162713.9	1357	7	2544	-684	-12	0	3prime_fragment	FALSE	canonical	3	63	junction_3	39.8591269347436	868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	282	False	NA	NA	False	ATTAAA	-17	NA	79658629	79645653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_79646727_79647710_79647795_79649016_79649223_79649987_79650055_79658559
ENSMUSG00000022420.17_79649161_79658629_1	chr15	-	199	3	ISM	ENSMUSG00000022420.17	ENSMUST00000162713.9	1357	7	2544	2823	-12	-2770	internal_fragment	FALSE	canonical	3	63	junction_1	2	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGGCGCTGTAACTGTTG	282	False	NA	NA	False	NA	NA	NA	79658629	79649160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_79649223_79649987_79650055_79658559
ENSMUSG00000022422.14_54939495_54953876_1	chr15	-	1255	9	NNC	ENSMUSG00000022422.14	novel	1324	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	86.3639645627735	1728	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATCCCTGACTTCTTT	NA	False	NA	-5	True	AATAAA	-17	NA	54953876	54939494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54947444_54947584_54950206_54950240_54950997_54951133_54952350_54952520_54953621
ENSMUSG00000022427.5_79555082_79556554_1	chr15	+	502	4	FSM	ENSMUSG00000022427.5	ENSMUST00000023062.5	1569	4	20	1047	0	-212	multi-exon	FALSE	canonical	3	903	junction_3	55.9305124437656	1278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTTGGAACTTTTTATT	8198	False	NA	9	True	NA	NA	NA	79555081	79556554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_79555210_79555373_79555493_79556097_79556216_79556417
ENSMUSG00000022427.5_79555082_79556768_1	chr15	+	716	4	FSM	ENSMUSG00000022427.5	ENSMUST00000023062.5	1569	4	20	833	0	2	multi-exon	FALSE	canonical	3	903	junction_3	55.9305124437656	1461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTACATGCCCATTGTG	8198	False	NA	7	True	AATAAA	-15	NA	79555081	79556768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_79555210_79555373_79555493_79556097_79556216_79556417
ENSMUSG00000022427.5_79555082_79557068_1	chr15	+	1016	4	FSM	ENSMUSG00000022427.5	ENSMUST00000023062.5	1569	4	20	533	0	187	multi-exon	FALSE	canonical	3	903	junction_3	55.9305124437656	2848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTATTGCTGTGTTTGTG	8198	False	NA	21	True	ATTAAA	-17	NA	79555081	79557068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_79555210_79555373_79555493_79556097_79556216_79556417
ENSMUSG00000022429.12_79446584_79489300_1	chr15	-	814	7	NIC	ENSMUSG00000022429.12	novel	1931	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	30.9066695427091	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGATGTGAAGCTTATATT	NA	False	NA	-4	True	ATTAAA	-15	NA	79489300	79446583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_79446784_79452839_79452957_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
ENSMUSG00000022429.12_79446584_79489300_2	chr15	-	1156	11	NIC	ENSMUSG00000022429.12	novel	2219	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_6	24.8927700346908	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGATGTGAAGCTTATATT	NA	False	NA	-4	True	ATTAAA	-15	NA	79489300	79446583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79469869_79469962_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
ENSMUSG00000022429.12_79446584_79489300_3	chr15	-	1198	12	NIC	ENSMUSG00000022429.12	novel	2219	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_6	30.287602133137	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGATGTGAAGCTTATATT	NA	False	NA	-4	True	ATTAAA	-15	NA	79489300	79446583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79469869_79469962_79475805_79475848_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
ENSMUSG00000022429.12_79483855_79489300_1	chr15	-	806	4	ISM	ENSMUSG00000022429.12	ENSMUST00000229408.2	1931	12	0	38043	0	-37271	5prime_fragment	FALSE	canonical	3	81	junction_3	2.82842712474619	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTACCTTTATACTACTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	79489300	79483854	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_79484394_79485717_79485763_79486601_79486686_79489162
ENSMUSG00000022432.8_85011762_85016178_1	chr15	-	562	4	ISM	ENSMUSG00000022432.8	ENSMUST00000023068.8	4047	25	-13	62872	-13	-56665	5prime_fragment	FALSE	canonical	3	116	junction_3	11.8977121983832	216	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTACAAAAAGCTGAAGAAGA	NA	False	NA	NA	False	AAAAAG	-4	NA	85016178	85011761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_85011873_85011959_85012073_85013871_85014061_85016029
ENSMUSG00000022433.22_79302056_79339767_1	chr15	-	2703	11	NIC	ENSMUSG00000022433.22	novel	2695	11	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	37	junction_10	155.61375260561	172	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATACCCTCTGTCTGCCTCT	8429	False	NA	-4	True	AATAAA	-24	NA	79339767	79302055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79339690
ENSMUSG00000022433.22_79303349_79339767_1	chr15	-	1410	11	NIC	ENSMUSG00000022433.22	novel	1392	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	155.61375260561	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACAAATAAGAGAAAGGACA	8429	False	NA	NA	False	NA	NA	NA	79339767	79303348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79339690
ENSMUSG00000022434.9_84921388_84947031_1	chr15	+	2420	9	FSM	ENSMUSG00000022434.9	ENSMUST00000023069.9	2518	9	98	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	15.0742951742362	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGCTCAGTTTTTC	NA	False	NA	8	True	AATAAA	-15	NA	84921387	84947031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_84921446_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84945732
ENSMUSG00000022435.7_84905481_84906750_1	chr15	+	428	2	ISM	ENSMUSG00000022435.7	ENSMUST00000023070.7	1093	6	4139	-2	4139	2	3prime_fragment	FALSE	canonical	3	5	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTCCAGAGTGAAAGGAGAA	NA	False	NA	NA	False	AATAAA	-15	NA	84905480	84906750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_84905597_84906438
ENSMUSG00000022436.17_78783968_78796251_1	chr15	+	2514	18	FSM	ENSMUSG00000022436.17	ENSMUST00000001226.11	2375	18	-135	-4	0	0	multi-exon	FALSE	canonical	3	356	junction_17	50.4832700370451	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAACTGGCCAAACGAAAA	4398	False	NA	87	True	AATAAA	-20	NA	78783967	78796251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78795538
ENSMUSG00000022437.8_84076442_84098505_1	chr15	+	1661	15	NNC	ENSMUSG00000022437.8	novel	4629	15	NA	NA	0	-2963	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	482.592768918314	15519	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGTGTCCTGGATGTGGTC	NA	False	NA	28	True	AATAAA	-14	NA	84076441	84098505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095242_84095380_84098326
ENSMUSG00000022437.8_84076442_84098505_2	chr15	+	1666	15	FSM	ENSMUSG00000022437.8	ENSMUST00000023071.8	4629	15	0	2963	0	-2963	multi-exon	FALSE	canonical	3	1573	junction_6	135.39963524504	15725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGTGTCCTGGATGTGGTC	NA	False	NA	28	True	AATAAA	-14	NA	84076441	84098505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095237_84095380_84098326
ENSMUSG00000022438.7_84116267_84197729_1	chr15	+	1601	13	FSM	ENSMUSG00000022438.7	ENSMUST00000023072.7	3784	13	23	2160	0	-2160	multi-exon	FALSE	canonical	3	64	junction_4	7.38052994182818	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCACTCCTGAGTCTC	NA	False	NA	12	True	AGTAAA	-15	NA	84116266	84197729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_84116388_84155431_84155522_84157699_84157771_84166962_84167066_84174587_84174729_84176982_84177099_84179757_84179817_84182166_84182187_84187608_84187671_84188035_84188105_84193053_84193156_84196903_84196977_84197155
ENSMUSG00000022442.17_83368248_83395076_1	chr15	-	1764	12	FSM	ENSMUSG00000022442.17	ENSMUST00000016897.12	2060	12	18	278	-1	-219	multi-exon	FALSE	canonical	3	63	junction_11	7.21110255092798	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGGAGGAGTCCACATCAC	NA	False	NA	NA	False	AATAAA	-13	NA	83395076	83368247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_83368515_83373669_83373834_83376743_83376831_83380472_83380617_83381520_83381630_83382352_83382488_83384122_83384304_83386281_83386491_83389450_83389568_83389683_83389845_83390480_83390529_83394934
ENSMUSG00000022451.13_94477547_94487760_1	chr15	-	1310	9	FSM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	0	1715	0	0	multi-exon	FALSE	canonical	3	499	junction_8	20.6333316505115	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATAGAAGACTCATGATTT	NA	False	NA	83	True	TTTAAA	-7	NA	94487760	94477546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
ENSMUSG00000022451.13_94477674_94487760_1	chr15	-	1183	9	FSM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	0	1842	0	-127	multi-exon	FALSE	canonical	3	499	junction_8	20.6333316505115	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGTAAAGTTTCCAGCT	NA	False	NA	-44	True	ATTAAA	-13	NA	94487760	94477673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
ENSMUSG00000022451.13_94478580_94487760_1	chr15	-	1230	8	ISM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	0	2748	0	321	5prime_fragment	FALSE	canonical	3	499	junction_7	22.0565136845869	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGATTATCACTAGTGCT	NA	False	NA	NA	False	AATAAA	-22	NA	94487760	94478579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
ENSMUSG00000022452.17_82230278_82233266_1	chr15	+	541	3	NNC	ENSMUSG00000022452.17	novel	705	3	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	801.5	11619	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTCGTCCCCATTTCTCA	NA	False	NA	36	True	AATAAA	-18	NA	82230277	82233266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_82230471_82232100_82232242_82233059
ENSMUSG00000022452.17_82230278_82233266_2	chr15	+	550	3	NNC	ENSMUSG00000022452.17	novel	705	3	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	801.5	14400	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTCGTCCCCATTTCTCA	NA	False	NA	36	True	AATAAA	-18	NA	82230277	82233266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_82230471_82232100_82232242_82233050
ENSMUSG00000022453.9_82213733_82223017_1	chr15	-	1731	9	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_6	86.2554346113913	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGGTACTATGACCTG	1354	False	NA	0	True	AATAAA	-31	NA	82223017	82213732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82221587_82221724_82222438_82222516_82222952
ENSMUSG00000022453.9_82213733_82223126_1	chr15	-	1840	9	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_6	86.2554346113913	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGGTACTATGACCTG	1245	False	NA	0	True	AATAAA	-31	NA	82223126	82213732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82221587_82221724_82222438_82222516_82222952
ENSMUSG00000022453.9_82218653_82223017_1	chr15	-	1219	7	FSM	ENSMUSG00000022453.9	ENSMUST00000230380.2	1020	7	-34	-165	-9	165	multi-exon	FALSE	canonical	3	267	junction_3	11.7106314470608	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGAGTGTGTTGGGGTCTTC	1354	False	NA	NA	False	ACTAAA	-14	NA	82223017	82218652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
ENSMUSG00000022462.8_96595728_96597611_2	chr15	-	943	3	NIC	ENSMUSG00000022462.8	novel	4660	16	NA	NA	0	-8182	intron_retention	FALSE	canonical	3	252	junction_2	29.5	652	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGCAACTT	NA	False	NA	NA	False	GATAAA	-26	NA	96597611	96595727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_96596145_96596495_96596699_96597288
ENSMUSG00000022463.9_82031447_82056005_1	chr15	+	1365	3	ISM	ENSMUSG00000022463.9	ENSMUST00000230105.2	1981	4	-5	2090	0	537	5prime_fragment	FALSE	canonical	3	662	junction_2	44.5	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCGTTTTAGGGGGCTGGG	2238	False	NA	NA	False	NA	NA	NA	82031446	82056005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_82031692_82053938_82054356_82055302
ENSMUSG00000022464.15_96894649_96953837_1	chr15	-	1987	16	FSM	ENSMUSG00000022464.15	ENSMUST00000023101.10	3932	16	0	1945	0	0	multi-exon	FALSE	canonical	3	1416	junction_8	94.9644143877063	752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGCCGTGCAGTGCAGT	NA	False	NA	-12	True	ATTAAA	-23	NA	96953837	96894648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
ENSMUSG00000022466.7_97572978_97601188_1	chr15	-	2133	16	ISM	ENSMUSG00000022466.7	ENSMUST00000023104.7	2271	17	2518	0	2518	0	3prime_fragment	FALSE	canonical	3	254	junction_7	32.2446205677095	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGGTCGATATTTCATTT	NA	False	NA	-3	True	AATAAA	-25	NA	97601188	97572977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_97573261_97576266_97576368_97576950_97577049_97578215_97578403_97579499_97579721_97581707_97581807_97581913_97581985_97584322_97584445_97585991_97586120_97589062_97589192_97591094_97591166_97591984_97592107_97594378_97594507_97596796_97596920_97598948_97599093_97601082
ENSMUSG00000022466.7_97599004_97603706_1	chr15	-	333	3	ISM	ENSMUSG00000022466.7	ENSMUST00000023104.7	2271	17	0	26026	0	-20744	5prime_fragment	FALSE	canonical	3	236	junction_2	36	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CACGAAAAACAGAATAAAAT	NA	False	NA	NA	False	AAGAAA	-42	NA	97603706	97599003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_97599093_97601082_97601251_97603630
ENSMUSG00000022471.15_81878202_81900364_1	chr15	+	1456	6	Genic_Genomic	ENSMUSG00000022471.15	novel	3296	13	NA	NA	6166	-6411	multi-exon	FALSE	non_canonical	0	0	junction_1	0	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATCCCAGAGACTCCGC	5709	False	NA	NA	False	NA	NA	NA	81878201	81900364	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_+_81879047_81882310_81882434_81883705_81883816_81886741_81886812_81887958_81887981_81900078
ENSMUSG00000022471.15_81900570_81924286_1	chr15	+	2025	12	NIC	ENSMUSG00000022471.15	novel	2114	13	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	3	28	junction_1	190.783291885872	1713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGCACTTTTCAGTAT	NA	False	NA	29	True	AATAAA	-15	NA	81900569	81924286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_81900677_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
ENSMUSG00000022474.16_81835309_81845070_1	chr15	-	1233	8	NNC	ENSMUSG00000022474.16	novel	1300	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	393.44013884852	4930	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845070	81835308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_81835814_81836124_81836241_81836925_81836996_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
ENSMUSG00000022474.16_81835309_81845070_2	chr15	-	1206	8	NNC	ENSMUSG00000022474.16	novel	1300	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_7	366.457113898108	4789	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845070	81835308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842079_81844915
ENSMUSG00000022476.9_81756685_81783734_1	chr15	-	866	4	NIC	ENSMUSG00000022476.9	novel	438	2	NA	NA	15596	15744	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGTGACGTGACAAATGG	NA	False	NA	NA	False	NA	NA	NA	81783734	81756684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_81756750_81773498_81773636_81779370_81779630_81783329
ENSMUSG00000022476.9_81800284_81810441_1	chr15	-	1488	6	FSM	ENSMUSG00000022476.9	ENSMUST00000023113.7	2542	6	0	1054	0	318	multi-exon	FALSE	canonical	3	251	junction_5	12.0432553738597	1101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACCTCCCCTTTTCATTA	428	False	NA	-2	True	AATAAA	-17	NA	81810441	81800283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_81800867_81801400_81801603_81802468_81802533_81802875_81802963_81806609_81806707_81809986
ENSMUSG00000022477.14_81756685_81799334_1	chr15	+	2743	18	FSM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	175	0	0	0	multi-exon	FALSE	canonical	3	1727	junction_10	137.479737418618	2711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	NA	False	NA	19	True	AAAAAG	-16	NA	81756684	81799334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
ENSMUSG00000022477.14_81797897_81799334_1	chr15	+	745	3	ISM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	41387	0	3407	0	3prime_fragment	FALSE	canonical	3	2170	junction_1	6.5	1502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	NA	False	NA	19	True	AAAAAG	-16	NA	81797896	81799334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_81798014_81798438_81798561_81798828
ENSMUSG00000022483.18_97873483_97875265_1	chr15	-	1031	3	ISM	ENSMUSG00000022483.18	ENSMUST00000088355.12	4862	53	27273	0	11537	0	3prime_fragment	FALSE	canonical	3	15	junction_2	1	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGACTTGTGTTTTGT	9670	False	NA	NA	False	ATTAAA	-31	NA	97875265	97873482	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_97874068_97874522_97874766_97875062
ENSMUSG00000022487.15_103310888_103320348_1	chr15	-	396	4	NNC	ENSMUSG00000022487.15	novel	698	9	NA	NA	16579	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	54.9565484926248	868	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCAAGTACTTTTTT	3182	False	NA	-2	True	AGTAAA	-16	NA	103320348	103310887	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_103310986_103313235_103313270_103318050_103318146_103320179
ENSMUSG00000022487.15_103310888_103338836_1	chr15	-	696	9	NNC	ENSMUSG00000022487.15	novel	819	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	41.1400048614484	721	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCAAGTACTTTTTT	8423	False	NA	-2	True	AGTAAA	-16	NA	103338836	103310887	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336772_103336812_103338782
ENSMUSG00000022487.15_103310888_103338836_2	chr15	-	657	8	NIC	ENSMUSG00000022487.15	novel	819	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_7	42.0432236283236	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCAAGTACTTTTTT	8423	False	NA	-2	True	AGTAAA	-16	NA	103338836	103310887	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103338782
ENSMUSG00000022490.8_103439267_103446421_2	chr15	-	675	6	FSM	ENSMUSG00000022490.8	ENSMUST00000228813.2	821	6	0	146	0	-146	multi-exon	FALSE	canonical	1	3	junction_5	80.2331602269286	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGAGCTTTTCTTCTTTC	2061	False	NA	-38	True	GATAAA	-15	NA	103446421	103439266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_103439377_103439780_103439888_103440752_103440909_103441464_103441529_103441883_103441922_103446221
ENSMUSG00000022500.16_10777351_10810943_1	chr16	-	1981	4	FSM	ENSMUSG00000022500.16	ENSMUST00000023143.14	2235	4	42	212	-8	-212	multi-exon	FALSE	canonical	3	313	junction_3	22.4548930574657	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTTGTGTTGTGTTTCCA	NA	False	NA	21	True	AAGAAA	-1	NA	10810943	10777350	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_10778916_10781120_10781278_10784288_10784514_10810909
ENSMUSG00000022500.16_10778233_10810943_1	chr16	-	1099	4	FSM	ENSMUSG00000022500.16	ENSMUST00000023143.14	2235	4	42	1094	-8	455	multi-exon	FALSE	canonical	3	313	junction_3	22.4548930574657	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGGCCTGTGAAGGGT	NA	False	NA	-4	True	AATAAA	-25	NA	10810943	10778232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_10778916_10781120_10781278_10784288_10784514_10810909
ENSMUSG00000022500.16_10778394_10810943_1	chr16	-	938	4	FSM	ENSMUSG00000022500.16	ENSMUST00000023143.14	2235	4	42	1255	-8	294	multi-exon	FALSE	canonical	3	313	junction_3	22.4548930574657	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGTCTCTGGCACTCAGAA	NA	False	NA	-1	True	NA	NA	NA	10810943	10778393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_10778916_10781120_10781278_10784288_10784514_10810909
ENSMUSG00000022500.16_10791470_10810943_1	chr16	-	386	3	NNC	ENSMUSG00000022500.16	novel	2235	4	NA	NA	-8	-7275	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	2	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGTCAAGGAATTTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	10810943	10791469	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_10791638_10793290_10793475_10810909
ENSMUSG00000022503.11_10229813_10241395_2	chr16	+	1218	11	NNC	ENSMUSG00000022503.11	novel	2121	11	NA	NA	0	185	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	254.620914302027	2095	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTAGGGCCTGCTTCCT	NA	False	NA	17	True	AATAAA	-19	NA	10229812	10241395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119_10238211_10238837_10238993_10239090_10239202_10239440_10239544_10240690_10240770_10241104
ENSMUSG00000022503.11_10229813_10241395_3	chr16	+	1121	11	NNC	ENSMUSG00000022503.11	novel	2121	11	NA	NA	0	185	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_3	255.963591160931	275	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTAGGGCCTGCTTCCT	NA	False	NA	17	True	AATAAA	-19	NA	10229812	10241395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_10229860_10229933_10230039_10231474_10231507_10235524_10235594_10237516_10237550_10238119_10238211_10238837_10238993_10239090_10239202_10239440_10239544_10240685_10240770_10241104
ENSMUSG00000022516.11_4756986_4758883_1	chr16	+	1251	3	NNC	ENSMUSG00000022516.11	novel	1618	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	60	junction_1	233.5	1118	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTGCTTCTGAGTGCCA	105	False	NA	12	True	AATAAA	-18	NA	4756985	4758883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_4757158_4757247_4757503_4758059
ENSMUSG00000022516.11_4756986_4758883_2	chr16	+	1814	2	FSM	ENSMUSG00000022516.11	ENSMUST00000230224.2	660	2	-6	-1148	0	0	multi-exon	FALSE	canonical	3	563	junction_1	0	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTGCTTCTGAGTGCCA	105	False	NA	12	True	AATAAA	-18	NA	4756985	4758883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_4757158_4757241
ENSMUSG00000022526.9_76738451_76755608_1	chr15	-	1367	4	FSM	ENSMUSG00000022526.9	ENSMUST00000080406.7	4036	4	27	2642	0	-1241	multi-exon	FALSE	canonical	3	11	junction_3	4.24264068711928	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGACCTAAGTCGGCACC	NA	False	NA	NA	False	AATAAA	-15	NA	76755608	76738450	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76738815_76754006_76754121_76754481_76754615_76754852
ENSMUSG00000022538.21_30380189_30406381_1	chr16	-	2270	14	NNC	ENSMUSG00000022538.21	novel	3180	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	136.800506937017	950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTGATATTCTTATTGTC	NA	False	NA	-8	True	ATTAAA	-14	NA	30406381	30380188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386658_30387931_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
ENSMUSG00000022538.21_30380189_30406381_2	chr16	-	2277	14	NNC	ENSMUSG00000022538.21	novel	3180	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	182.53001698513	931	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTGATATTCTTATTGTC	NA	False	NA	-8	True	ATTAAA	-14	NA	30406381	30380188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386658_30387922_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30399776_30399864_30400873_30400961_30401348_30401468_30404371_30404499_30406255
ENSMUSG00000022540.17_4826594_4831394_1	chr16	-	1363	11	NNC	ENSMUSG00000022540.17	novel	1355	11	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	152.153376564571	1450	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831394	4826593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829557_4830104_4830155_4830290_4830374_4831166_4831239_4831326
ENSMUSG00000022540.17_4826594_4831394_2	chr16	-	1322	11	NIC	ENSMUSG00000022540.17	novel	1355	11	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_6	148.536325523422	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831394	4826593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828761_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831239_4831326
ENSMUSG00000022540.17_4826594_4831394_3	chr16	-	1362	11	NNC	ENSMUSG00000022540.17	novel	1355	11	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	151.285822204197	1577	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831394	4826593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831239_4831332
ENSMUSG00000022540.17_4826594_4831394_4	chr16	-	1269	10	NIC	ENSMUSG00000022540.17	novel	1355	11	NA	NA	-3	0	combination_of_known_splicesites	TRUE	canonical	3	11	junction_4	156.342769990796	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831394	4826593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828710_4828807_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831239_4831326
ENSMUSG00000022544.15_5051485_5062768_1	chr16	-	1751	13	NNC	ENSMUSG00000022544.15	novel	1490	9	NA	NA	3966	10531	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	828	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCCCGGAAGCCTCGCTAT	NA	False	NA	NA	False	NA	NA	NA	5062768	5051484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_5051722_5052829_5052908_5053026_5053131_5054183_5054333_5056508_5056594_5056919_5057031_5057769_5057892_5058007_5058047_5058322_5058383_5059149_5059261_5060352_5060468_5061551_5061628_5062304
ENSMUSG00000022544.15_5062743_5073820_1	chr16	-	1416	8	FSM	ENSMUSG00000022544.15	ENSMUST00000064635.12	2170	8	27	727	0	0	multi-exon	FALSE	canonical	3	270	junction_1	73.3462573645565	1421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGACTGTCCTGTCAGAC	NA	False	NA	-5	True	AATAAA	-17	NA	5073820	5062742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_5063250_5065316_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ENSMUSG00000022544.15_5062955_5073820_1	chr16	-	1285	7	NIC	ENSMUSG00000022544.15	novel	2170	8	NA	NA	0	-212	intron_retention	FALSE	canonical	3	270	junction_1	79.2199820471802	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAGAAAAGGAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	5073820	5062954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_5063250_5065316_5065464_5066428_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ENSMUSG00000022544.15_5062955_5073820_2	chr16	-	1204	8	FSM	ENSMUSG00000022544.15	ENSMUST00000064635.12	2170	8	27	939	0	-212	multi-exon	FALSE	canonical	3	270	junction_1	73.3462573645565	1119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAGAAAAGGAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	5073820	5062954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_5063250_5065316_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ENSMUSG00000022544.15_5065239_5073820_1	chr16	-	853	6	NIC	ENSMUSG00000022544.15	novel	987	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_2	181.055129725727	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTTCTCTTTCTGTGG	NA	False	NA	-2	True	NA	NA	NA	5073820	5065238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_5065464_5066428_5066695_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ENSMUSG00000022548.15_31115940_31120074_1	chr16	-	735	3	NNC	ENSMUSG00000022548.15	novel	1070	5	NA	NA	2189	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	75	159	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGTGTTTCCTGTGGA	NA	False	NA	-4	True	AATAAA	-12	NA	31120074	31115939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_31116395_31119212_31119302_31119883
ENSMUSG00000022548.15_31115940_31122496_1	chr16	-	813	3	FSM	ENSMUSG00000022548.15	ENSMUST00000155682.2	422	3	0	-391	0	0	multi-exon	FALSE	canonical	3	168	junction_1	2	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGTGTTTCCTGTGGA	NA	False	NA	-4	True	AATAAA	-12	NA	31122496	31115939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_31116395_31119212_31119302_31122227
ENSMUSG00000022548.15_31115940_31130166_1	chr16	-	1001	4	ISM	ENSMUSG00000022548.15	ENSMUST00000023207.15	979	5	3246	-34	0	0	3prime_fragment	FALSE	canonical	3	139	junction_3	14.7044966667419	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGTGTTTCCTGTGGA	NA	False	NA	-4	True	AATAAA	-12	NA	31130166	31115939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831
ENSMUSG00000022548.15_31115940_31133412_1	chr16	-	930	6	FSM	ENSMUSG00000022548.15	ENSMUST00000130560.8	2074	6	214	930	0	0	multi-exon	FALSE	canonical	3	43	junction_5	47.7887015935775	1633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGTGTTTCCTGTGGA	8710	False	NA	-4	True	AATAAA	-12	NA	31133412	31115939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216_31133287_31133369
ENSMUSG00000022548.15_31115940_31133412_2	chr16	-	1019	6	NIC	ENSMUSG00000022548.15	novel	2074	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	60.0553078420218	1065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGTGTTTCCTGTGGA	8710	False	NA	-4	True	AATAAA	-12	NA	31133412	31115939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_31116484_31119212_31119302_31122227_31122350_31129831_31129983_31133216_31133287_31133369
ENSMUSG00000022548.15_31115940_31133412_3	chr16	-	860	5	FSM	ENSMUSG00000022548.15	ENSMUST00000115230.2	1070	5	210	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	68.1725751310598	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGTGTTTCCTGTGGA	8710	False	NA	-4	True	AATAAA	-12	NA	31133412	31115939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133369
ENSMUSG00000022550.19_76480011_76481531_1	chr15	+	982	8	NIC	ENSMUSG00000022550.19	novel	1200	5	NA	NA	847	1515	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCAGGATCTGGAAGGGC	2578	False	NA	NA	False	GGGGCT	-34	NA	76480010	76481531	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388
ENSMUSG00000022551.9_76227733_76230135_1	chr15	+	1185	7	FSM	ENSMUSG00000022551.9	ENSMUST00000023210.8	1520	7	10	325	0	3	multi-exon	FALSE	canonical	3	4240	junction_5	258.32822575596	17059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTTTAGCTGGTCAATG	NA	False	NA	28	True	AATAAA	-18	NA	76227732	76230135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76227893_76228501_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
ENSMUSG00000022551.9_76227767_76230135_1	chr15	+	1151	7	FSM	ENSMUSG00000022551.9	ENSMUST00000023210.8	1520	7	44	325	0	3	multi-exon	FALSE	canonical	3	4240	junction_5	258.32822575596	16774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTTTAGCTGGTCAATG	NA	False	NA	28	True	AATAAA	-18	NA	76227766	76230135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76227893_76228501_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
ENSMUSG00000022552.17_76231240_76234898_1	chr15	-	1316	9	NIC	ENSMUSG00000022552.17	novel	1734	9	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	49.7386921822438	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTTCTGTTCTTGGA	8526	False	NA	-3	True	ATTAAA	-16	NA	76234898	76231239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_76231386_76231458_76231588_76231681_76231795_76231863_76232018_76232095_76232205_76232285_76232423_76232500_76232636_76234254_76234430_76234680
ENSMUSG00000022552.17_76231240_76234898_2	chr15	-	1146	8	NIC	ENSMUSG00000022552.17	novel	1734	9	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_7	47.1584389833563	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTTCTGTTCTTGGA	8526	False	NA	-3	True	ATTAAA	-16	NA	76234898	76231239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_76231386_76231458_76231588_76231681_76231795_76231863_76232018_76232095_76232205_76232285_76232428_76232500_76232636_76234680
ENSMUSG00000022552.17_76231240_76235283_1	chr15	-	1701	9	NIC	ENSMUSG00000022552.17	novel	1734	9	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	49.7386921822438	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTTCTGTTCTTGGA	8141	False	NA	-3	True	ATTAAA	-16	NA	76235283	76231239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_76231386_76231458_76231588_76231681_76231795_76231863_76232018_76232095_76232205_76232285_76232423_76232500_76232636_76234254_76234430_76234680
ENSMUSG00000022554.8_76253098_76254979_2	chr15	+	1335	6	FSM	ENSMUSG00000022554.8	ENSMUST00000023213.8	1993	6	0	658	0	395	multi-exon	FALSE	canonical	3	77	junction_1	14.4858551697855	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGCTGCCCAATCCTGTG	3544	False	NA	NA	False	AGTAAA	-16	NA	76253097	76254979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76253770_76253851_76253953_76254055_76254155_76254361_76254454_76254531_76254655_76254731
ENSMUSG00000022554.8_76253098_76255261_2	chr15	+	1617	6	FSM	ENSMUSG00000022554.8	ENSMUST00000023213.8	1993	6	0	376	0	-376	multi-exon	FALSE	canonical	3	77	junction_1	14.4858551697855	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCGGAGTCTTCTTGCTT	3544	False	NA	9	True	NA	NA	NA	76253097	76255261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76253770_76253851_76253953_76254055_76254155_76254361_76254454_76254531_76254655_76254731
ENSMUSG00000022555.13_76386215_76396037_1	chr15	-	1704	17	NIC	ENSMUSG00000022555.13	novel	1888	17	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	48.5218620185788	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCAGGGGTTGTGGAGGC	NA	False	NA	-5	True	AATAAA	-18	NA	76396037	76386214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_76386589_76386691_76386755_76386843_76386932_76387018_76387085_76387158_76387202_76387353_76387399_76387473_76387516_76387589_76387629_76387717_76387822_76387905_76387981_76388064_76388173_76388314_76388421_76388548_76388602_76388685_76388772_76388865_76388907_76390765_76390854_76395754
ENSMUSG00000022555.13_76386215_76396037_2	chr15	-	1774	17	FSM	ENSMUSG00000022555.13	ENSMUST00000023214.11	1888	17	114	0	-11	0	multi-exon	FALSE	canonical	3	155	junction_16	22.0368122411115	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCAGGGGTTGTGGAGGC	NA	False	NA	-5	True	AATAAA	-18	NA	76396037	76386214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76386589_76386691_76386755_76386843_76386932_76387018_76387085_76387158_76387272_76387353_76387399_76387473_76387516_76387589_76387629_76387717_76387822_76387905_76387981_76388064_76388173_76388314_76388421_76388548_76388602_76388685_76388772_76388865_76388907_76390765_76390854_76395754
ENSMUSG00000022561.14_76215544_76219103_1	chr15	+	2067	11	NIC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	0	0	intron_retention	FALSE	non_canonical	3	245	junction_2	20.9035882087263	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATCCTGGCCCGCTGTC	4826	False	NA	20	True	AATAAA	-23	NA	76215543	76219103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_76215664_76216095_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
ENSMUSG00000022561.14_76215544_76219103_2	chr15	+	1990	12	FSM	ENSMUSG00000022561.14	ENSMUST00000023221.13	2107	12	113	4	0	0	multi-exon	FALSE	non_canonical	3	197	junction_6	31.5777932223483	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATCCTGGCCCGCTGTC	4826	False	NA	20	True	AATAAA	-23	NA	76215543	76219103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76215664_76216095_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217300_76217376_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
ENSMUSG00000022562.16_76180801_76181559_1	chr15	-	522	3	ISM	ENSMUSG00000022562.16	ENSMUST00000171340.9	4081	27	9742	0	133	0	intron_retention	FALSE	canonical	3	28	junction_2	3.5	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTGGGTTATTGGGCTC	8748	False	NA	-17	True	AATAAA	-19	NA	76181559	76180800	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_76180982_76181120_76181219_76181316
ENSMUSG00000022568.18_75919007_75920486_1	chr15	-	809	5	ISM	ENSMUSG00000022568.18	ENSMUST00000136390.8	3071	22	14082	0	0	0	3prime_fragment	FALSE	canonical	3	414	junction_4	34.6770817687994	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTTTTGTCCTGCC	9300	False	NA	-1	True	AATAAA	-21	NA	75920486	75919006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_75919387_75919469_75919522_75919963_75920002_75920070_75920214_75920290
ENSMUSG00000022571.10_75788326_75793409_1	chr15	-	1330	6	NNC	ENSMUSG00000022571.10	novel	1339	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	105.651502592249	1373	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTGGACTTTAGTAGAG	NA	False	NA	-13	True	NA	NA	NA	75793409	75788325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_75788929_75789085_75789179_75790109_75790314_75790521_75790702_75791077_75791143_75793224
ENSMUSG00000022574.8_75762812_75766139_1	chr15	-	1700	13	FSM	ENSMUSG00000022574.8	ENSMUST00000023237.8	1898	13	191	7	0	0	multi-exon	FALSE	canonical	3	20	junction_8	7.1351049201972	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCAGCCATGTGTCGTT	NA	False	NA	NA	False	CATAAA	-23	NA	75766139	75762811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75762910_75762997_75763106_75763195_75763351_75763428_75763532_75763632_75763714_75763811_75763897_75764190_75764332_75764405_75764603_75764953_75765070_75765154_75765286_75765401_75765485_75765568_75765697_75765865
ENSMUSG00000022580.14_75584086_75586257_1	chr15	+	881	4	NIC	ENSMUSG00000022580.14	novel	2146	11	NA	NA	-351	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	3.29983164553722	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGAGTCTGAGTCGGGTAC	NA	False	NA	NA	False	ATTAAA	-17	NA	75584085	75586257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_75584301_75585067_75585215_75585298_75585461_75585900
ENSMUSG00000022583.13_75140270_75144085_1	chr15	+	914	4	NNC	ENSMUSG00000022583.13	novel	877	4	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4.89897948556636	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAAGATCTCAGTTTTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	75140269	75144085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_75140365_75140550_75140649_75141628_75141746_75143481
ENSMUSG00000022587.15_74827502_74831180_1	chr15	+	707	4	NNC	ENSMUSG00000022587.15	novel	1122	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_3	242.10511950161	577	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8387	False	NA	27	True	AATAAA	-15	NA	74827501	74831180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_74827567_74829625_74829727_74830117_74830238_74830759
ENSMUSG00000022601.12_55826671_55829276_1	chr16	+	2149	2	ISM	ENSMUSG00000022601.12	ENSMUST00000184618.2	3159	3	1116	0	1116	0	3prime_fragment	FALSE	canonical	3	150	junction_1	0	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGGCGTTGAGCTTGAC	6271	False	NA	6	True	AATAAA	-27	NA	55826670	55829276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_55826714_55827170
ENSMUSG00000022614.9_89235342_89239836_1	chr15	-	2745	14	FSM	ENSMUSG00000022614.9	ENSMUST00000023283.6	2906	14	26	135	0	0	multi-exon	FALSE	canonical	0	0	junction_12	66.7675469479281	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTAGTGGTTTTTCCTT	NA	False	NA	-3	True	AATAAA	-21	NA	89239836	89235341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766_89239021_89239558
ENSMUSG00000022617.16_89310563_89313633_3	chr15	-	1245	11	FSM	ENSMUSG00000022617.16	ENSMUST00000023289.13	1707	11	469	-7	0	0	multi-exon	FALSE	canonical	3	146	junction_8	79.2225346729073	700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGACTTAAGTGACATTC	1649	False	NA	NA	False	AATAAA	-30	NA	89313633	89310562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312748_89312916_89313031_89313251_89313361_89313579
ENSMUSG00000022635.10_93283994_93296188_1	chr15	-	731	7	NIC	ENSMUSG00000022635.10	novel	877	8	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	43	junction_4	235.838515844116	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCAGTTGTGGAATAGT	NA	False	NA	-14	True	AATAAA	-14	NA	93296188	93283993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93293467_93293497_93295050_93295137_93296043
ENSMUSG00000022635.10_93283994_93296188_2	chr15	-	836	8	NNC	ENSMUSG00000022635.10	novel	877	8	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	236.134862884301	3361	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCAGTTGTGGAATAGT	NA	False	NA	-14	True	AATAAA	-14	NA	93296188	93283993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93293467_93293497_93295050_93295130_93296043
ENSMUSG00000022635.10_93283994_93296188_3	chr15	-	1007	9	NNC	ENSMUSG00000022635.10	novel	877	8	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	289.359637821172	256	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCAGTTGTGGAATAGT	NA	False	NA	-14	True	AATAAA	-14	NA	93296188	93283993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_93284168_93285113_93285278_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93293467_93293497_93295050_93295137_93296043
ENSMUSG00000022635.10_93283994_93296188_4	chr15	-	901	9	NIC	ENSMUSG00000022635.10	novel	877	8	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	285.365965691426	3360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCAGTTGTGGAATAGT	NA	False	NA	-14	True	AATAAA	-14	NA	93296188	93283993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93291587_93291646_93293467_93293497_93295050_93295137_93296043
ENSMUSG00000022652.8_48432067_48451274_1	chr16	+	989	8	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	17037	11	at_least_one_novel_splicesite	FALSE	canonical	3	485	junction_1	244.404064898224	3949	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCCTTTTGATTGCTAT	732	False	NA	22	True	AATAAA	-27	NA	48432066	48451274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_48432222_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
ENSMUSG00000022652.8_48432067_48451274_2	chr16	+	879	8	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	17037	11	at_least_one_novel_splicesite	FALSE	canonical	3	194	junction_1	345.998525418587	2229	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCCTTTTGATTGCTAT	732	False	NA	22	True	AATAAA	-27	NA	48432066	48451274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_48432112_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
ENSMUSG00000022652.8_48432067_48451891_1	chr16	+	1415	9	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	17037	628	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	424.555061211146	4767	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGATGTATAATGTGCCT	732	False	NA	17	True	ATTAAA	-21	NA	48432066	48451891	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_48432222_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
ENSMUSG00000022658.11_45531593_45544729_1	chr16	-	998	4	FSM	ENSMUSG00000022658.11	ENSMUST00000096057.5	1240	4	242	0	242	0	multi-exon	FALSE	canonical	3	70	junction_1	1.63299316185545	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAGAGTATAACTTTATT	NA	False	NA	-9	True	AATAAA	-15	NA	45544729	45531592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_45532073_45533294_45533398_45543285_45543461_45544489
ENSMUSG00000022668.11_44559242_44566726_1	chr16	-	1173	5	NIC	ENSMUSG00000022668.11	novel	3415	6	NA	NA	0	263	combination_of_known_splicesites	FALSE	canonical	2	8	junction_3	47.3675785743793	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTCTTCTTCTAGTATTT	NA	False	NA	NA	False	AATAGA	-22	NA	44566726	44559241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_44559732_44560391_44560511_44562866_44562967_44565757_44565857_44566361
ENSMUSG00000022668.11_44559242_44566726_2	chr16	-	1304	6	FSM	ENSMUSG00000022668.11	ENSMUST00000162512.8	3415	6	0	2111	0	263	multi-exon	FALSE	canonical	3	89	junction_4	12.4739729036101	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTCTTCTTCTAGTATTT	NA	False	NA	NA	False	AATAGA	-22	NA	44566726	44559241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565757_44565857_44566361
ENSMUSG00000022668.11_44559344_44566726_2	chr16	-	1202	6	FSM	ENSMUSG00000022668.11	ENSMUST00000162512.8	3415	6	0	2213	0	161	multi-exon	FALSE	canonical	3	89	junction_4	12.4739729036101	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTACTGTCTTCAATTCT	NA	False	NA	89	True	TATAAA	-34	NA	44566726	44559343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565757_44565857_44566361
ENSMUSG00000022668.11_44559505_44566726_1	chr16	-	942	5	FSM	ENSMUSG00000022668.11	ENSMUST00000161436.2	739	5	-80	-123	0	0	multi-exon	FALSE	canonical	0	0	junction_4	49.7562810105418	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTAAGGGTTACAAATAAT	NA	False	NA	-72	True	NA	NA	NA	44566726	44559504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44566361
ENSMUSG00000022668.11_44559505_44566726_3	chr16	-	1041	6	FSM	ENSMUSG00000022668.11	ENSMUST00000162512.8	3415	6	0	2374	0	0	multi-exon	FALSE	canonical	3	89	junction_4	12.4739729036101	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTAAGGGTTACAAATAAT	NA	False	NA	-72	True	NA	NA	NA	44566726	44559504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565757_44565857_44566361
ENSMUSG00000022671.14_15666307_15680804_1	chr16	-	626	3	FSM	ENSMUSG00000022671.14	ENSMUST00000023351.11	1035	3	407	2	-218	0	multi-exon	FALSE	canonical	3	566	junction_1	21	6270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTATGTGGAGTCCTGGT	NA	False	NA	-4	True	ATTAAA	-20	NA	15680804	15666306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_15666594_15680261_15680408_15680611
ENSMUSG00000022671.14_15666307_15680869_1	chr16	-	669	4	NNC	ENSMUSG00000022671.14	novel	758	4	NA	NA	-283	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	277.245178296916	5692	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTATGTGGAGTCCTGGT	NA	False	NA	-4	True	ATTAAA	-20	NA	15680869	15666306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_15666594_15680261_15680408_15680611_15680797_15680818
ENSMUSG00000022671.14_15666307_15681182_1	chr16	-	982	4	NNC	ENSMUSG00000022671.14	novel	758	4	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	277.245178296916	7007	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTATGTGGAGTCCTGGT	NA	False	NA	-4	True	ATTAAA	-20	NA	15681182	15666306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_15666594_15680261_15680408_15680611_15680797_15680818
ENSMUSG00000022673.6_15441974_15455264_1	chr16	-	3376	16	FSM	ENSMUSG00000022673.6	ENSMUST00000023353.4	3589	16	0	213	0	0	multi-exon	FALSE	canonical	3	1276	junction_6	130.715909088714	998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTAATACTTGGTTTAAA	NA	False	NA	-8	True	AATAAA	-8	NA	15455264	15441973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
ENSMUSG00000022673.6_15453154_15455264_1	chr16	-	754	5	ISM	ENSMUSG00000022673.6	ENSMUST00000023353.4	3589	16	0	11393	0	-3497	5prime_fragment	FALSE	canonical	3	1361	junction_4	87.4424810947173	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAGAAAATGTTGGCAT	NA	False	NA	NA	False	NA	NA	NA	15455264	15453153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
ENSMUSG00000022674.16_15373538_15412362_1	chr16	-	1174	4	NNC	ENSMUSG00000022674.16	novel	4207	4	NA	NA	-8	-169	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	678.752450374132	7379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTGTGCTATTTCTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	15412362	15373537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_15374394_15394874_15395005_15398922_15399072_15412323
ENSMUSG00000022674.16_15373538_15412362_2	chr16	-	1251	4	NNC	ENSMUSG00000022674.16	novel	4207	4	NA	NA	-8	-169	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_3	607.03047699436	7018	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTGTGCTATTTCTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	15412362	15373537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_15374408_15394878_15395005_15398922_15399072_15412256
ENSMUSG00000022677.16_14117108_14135197_1	chr16	-	1376	5	NNC	ENSMUSG00000022677.16	novel	1414	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	158.497634051742	1542	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135197	14117107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_14118074_14122317_14122405_14128910_14128996_14131679_14131878_14135157
ENSMUSG00000022677.16_14117108_14135197_2	chr16	-	1338	4	NIC	ENSMUSG00000022677.16	novel	1465	5	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_2	175.075856575244	1188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135197	14117107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_14118074_14122317_14122452_14131679_14131878_14135157
ENSMUSG00000022677.16_14117488_14135197_1	chr16	-	1043	5	FSM	ENSMUSG00000022677.16	ENSMUST00000023357.14	1465	5	42	380	-1	-182	multi-exon	FALSE	canonical	3	293	junction_3	56.7384349449295	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAAGTTTGATTTTTTAA	NA	False	NA	NA	False	ATTAAA	-17	NA	14135197	14117487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_14118074_14122317_14122452_14128910_14128996_14131679_14131878_14135157
ENSMUSG00000022677.16_14117488_14135252_1	chr16	-	815	3	FSM	ENSMUSG00000022677.16	ENSMUST00000230495.2	1147	3	-44	376	-13	-182	multi-exon	FALSE	canonical	3	67	junction_2	185.5	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAAGTTTGATTTTTTAA	NA	False	NA	NA	False	ATTAAA	-17	NA	14135252	14117487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_14118074_14122317_14122452_14135157
ENSMUSG00000022677.16_14117757_14135197_1	chr16	-	774	5	FSM	ENSMUSG00000022677.16	ENSMUST00000023357.14	1465	5	42	649	-1	-451	multi-exon	FALSE	canonical	3	293	junction_3	56.7384349449295	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTTTTTAGTACTTTGTA	NA	False	NA	NA	False	TTTAAA	-24	NA	14135197	14117756	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_14118074_14122317_14122452_14128910_14128996_14131679_14131878_14135157
ENSMUSG00000022679.14_13758559_13765619_1	chr16	+	1488	5	FSM	ENSMUSG00000022679.14	ENSMUST00000148966.2	2315	5	0	827	0	459	multi-exon	FALSE	canonical	3	36	junction_1	78.6431815226215	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAATTCTAGAAAACGAA	521	False	NA	NA	False	AATAAA	-31	NA	13758558	13765619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_13758888_13759983_13760038_13762529_13762601_13764421_13764452_13764615
ENSMUSG00000022679.14_13758559_13765619_2	chr16	+	1434	4	FSM	ENSMUSG00000022679.14	ENSMUST00000023360.14	3087	4	30	1623	0	459	multi-exon	FALSE	canonical	3	154	junction_1	20.3960780543711	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAATTCTAGAAAACGAA	521	False	NA	NA	False	AATAAA	-31	NA	13758558	13765619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_13758888_13762529_13762601_13764421_13764452_13764615
ENSMUSG00000022679.14_13758559_13766449_2	chr16	+	2264	4	FSM	ENSMUSG00000022679.14	ENSMUST00000023360.14	3087	4	30	793	0	3	multi-exon	FALSE	canonical	3	154	junction_1	20.3960780543711	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTTGGGTATTGTCATTT	521	False	NA	12	True	NA	NA	NA	13758558	13766449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_13758888_13762529_13762601_13764421_13764452_13764615
ENSMUSG00000022679.14_13758559_13766587_1	chr16	+	2402	4	FSM	ENSMUSG00000022679.14	ENSMUST00000023360.14	3087	4	30	655	0	0	multi-exon	FALSE	canonical	3	154	junction_1	20.3960780543711	506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAAGATTGATGCTGATT	521	False	NA	NA	False	NA	NA	NA	13758558	13766587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_13758888_13762529_13762601_13764421_13764452_13764615
ENSMUSG00000022680.15_13637189_13653314_1	chr16	-	1093	10	NNC	ENSMUSG00000022680.15	novel	782	3	NA	NA	1631	13823	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2115	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACCGCCCCGCCCCGCCC	NA	False	NA	NA	False	NA	NA	NA	13653314	13637188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_13637301_13644746_13644850_13644923_13644990_13645251_13645354_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ENSMUSG00000022680.15_13637189_13653314_2	chr16	-	1092	10	NNC	ENSMUSG00000022680.15	novel	782	3	NA	NA	1631	13823	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2307	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACCGCCCCGCCCCGCCC	NA	False	NA	NA	False	NA	NA	NA	13653314	13637188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646876_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ENSMUSG00000022680.15_13652024_13654450_1	chr16	-	888	2	ISM	ENSMUSG00000022680.15	ENSMUST00000023361.12	4228	24	66541	1012	495	0	3prime_fragment	FALSE	canonical	3	113	junction_1	0	438	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGCTTTTGTTGCTGT	NA	False	NA	-17	True	NA	NA	NA	13654450	13652023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_13652711_13654249
ENSMUSG00000022680.15_13652407_13654450_1	chr16	-	505	2	ISM	ENSMUSG00000022680.15	ENSMUST00000023361.12	4228	24	66541	1395	495	-267	3prime_fragment	FALSE	canonical	3	113	junction_1	0	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTCCCTGTGCACTGCTG	NA	False	NA	NA	False	NA	NA	NA	13654450	13652406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_13652711_13654249
ENSMUSG00000022680.15_13676628_13720925_1	chr16	-	1182	11	ISM	ENSMUSG00000022680.15	ENSMUST00000115802.2	2466	14	70	9487	-6	801	5prime_fragment	FALSE	canonical	3	195	junction_3	12.7342059037853	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTCTGTTGCCTTTCTTA	9764	False	NA	NA	False	AATAAA	-23	NA	13720925	13676627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
ENSMUSG00000022681.16_13637189_13653139_1	chr16	+	925	10	FSM	ENSMUSG00000022681.16	ENSMUST00000023362.15	1175	10	74	176	0	109	multi-exon	FALSE	canonical	3	538	junction_1	69.8729004852541	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGCTTGTGGGAAAAGAT	NA	False	NA	NA	False	AATAAA	-25	NA	13637188	13653139	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ENSMUSG00000022681.16_13637189_13653314_1	chr16	+	931	8	NIC	ENSMUSG00000022681.16	novel	1014	9	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	230.175975270741	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTAGATGACTTTTTA	NA	False	NA	NA	False	AATAAA	-22	NA	13637188	13653314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_13637301_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ENSMUSG00000022681.16_13637189_13653314_2	chr16	+	1019	10	NNC	ENSMUSG00000022681.16	novel	1175	10	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_2	214.455958240128	881	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTAGATGACTTTTTA	NA	False	NA	NA	False	AATAAA	-22	NA	13637188	13653314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_13637301_13644746_13644769_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ENSMUSG00000022681.16_13637189_13653314_3	chr16	+	1095	10	NNC	ENSMUSG00000022681.16	novel	1175	10	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	223.267541442388	2715	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTAGATGACTTTTTA	NA	False	NA	NA	False	AATAAA	-22	NA	13637188	13653314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_13637301_13644751_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ENSMUSG00000022681.16_13637189_13653314_4	chr16	+	1046	9	NIC	ENSMUSG00000022681.16	novel	1175	10	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	3	44	junction_5	218.732963622313	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTAGATGACTTTTTA	NA	False	NA	NA	False	AATAAA	-22	NA	13637188	13653314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ENSMUSG00000022683.14_13532923_13548328_1	chr16	-	753	3	NIC	ENSMUSG00000022683.14	novel	1423	4	NA	NA	-21	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_2	25	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCCTTGTGTAAGAGGTAA	NA	False	NA	-2	True	AATAAA	-18	NA	13548328	13532922	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_13533461_13542972_13543080_13548220
ENSMUSG00000022684.16_13489884_13521471_1	chr16	+	2836	8	FSM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	162	5	0	-5	multi-exon	FALSE	canonical	3	82	junction_1	10.7760126660835	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAACCTTTATAGAGAAAT	NA	False	NA	NA	False	AATAAA	-19	NA	13489883	13521471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736_13516940_13519928
ENSMUSG00000022698.18_43960216_43980160_1	chr16	+	918	5	FSM	ENSMUSG00000022698.18	ENSMUST00000161326.8	4487	5	0	3569	0	-1377	multi-exon	FALSE	canonical	3	958	junction_1	274.815733719887	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATCATGTGTTGGATTGTT	NA	False	NA	100	True	NA	NA	NA	43960215	43980160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_43960475_43976772_43976910_43977436_43977557_43978242_43978310_43979825
ENSMUSG00000022698.18_43960216_43980346_1	chr16	+	1104	5	FSM	ENSMUSG00000022698.18	ENSMUST00000161326.8	4487	5	0	3383	0	-1191	multi-exon	FALSE	canonical	3	958	junction_1	274.815733719887	775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCAGAGCCTACTATATTG	NA	False	NA	22	True	AATAAA	-31	NA	43960215	43980346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_43960475_43976772_43976910_43977436_43977557_43978242_43978310_43979825
ENSMUSG00000022698.18_43960216_43981602_1	chr16	+	2360	5	FSM	ENSMUSG00000022698.18	ENSMUST00000161326.8	4487	5	0	2127	0	65	multi-exon	FALSE	canonical	3	958	junction_1	274.815733719887	1310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTTATAACTCTTACGTT	NA	False	NA	NA	False	GATAAA	-23	NA	43960215	43981602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_43960475_43976772_43976910_43977436_43977557_43978242_43978310_43979825
ENSMUSG00000022701.19_43710262_43735913_1	chr16	+	963	7	NIC	ENSMUSG00000022701.19	novel	1822	8	NA	NA	0	7068	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	34.0326640482673	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGAAAACTGAGGGAG	NA	False	NA	NA	False	AAAAAG	-13	NA	43710261	43735913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_43710402_43712515_43712555_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812
ENSMUSG00000022701.19_43710262_43752294_1	chr16	+	1715	7	ISM	ENSMUSG00000022701.19	ENSMUST00000122014.8	1822	8	0	7636	0	-7636	5prime_fragment	FALSE	canonical	3	68	junction_1	8.29993306532582	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTTTCCCTTTTCATTT	NA	False	NA	NA	False	AATAAA	-31	NA	43710261	43752294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556
ENSMUSG00000022701.19_43710262_43784060_1	chr16	+	3029	16	FSM	ENSMUSG00000022701.19	ENSMUST00000178400.9	3745	16	99	617	0	-617	multi-exon	FALSE	canonical	1	27	junction_10	16.0949957716331	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCTGCCTGGACTTACG	NA	False	NA	16	True	AATAAA	-16	NA	43710261	43784060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556_43751748_43759276_43759527_43763866_43764328_43765001_43765094_43767031_43767115_43767789_43767892_43777180_43777325_43779578_43779732_43780380_43780527_43783630
ENSMUSG00000022704.17_43681770_43710019_1	chr16	-	3022	9	NIC	ENSMUSG00000022704.17	novel	3856	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	31	junction_3	35.9374456521328	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCTGTGCATTGTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	43710019	43681769	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701355_43701577_43709929
ENSMUSG00000022706.17_18690768_18695289_1	chr16	-	957	4	FSM	ENSMUSG00000022706.17	ENSMUST00000023391.16	1280	4	323	0	0	0	multi-exon	FALSE	canonical	3	1642	junction_3	87.6711025493704	14227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTCGTTTATTTTAATC	NA	False	NA	-7	True	AATAAA	-15	NA	18695289	18690767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_18691413_18692286_18692446_18694073_18694158_18695220
ENSMUSG00000022706.17_18690768_18695289_2	chr16	-	757	5	NNC	ENSMUSG00000022706.17	novel	1280	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	768.173157562798	11309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTCGTTTATTTTAATC	NA	False	NA	-7	True	AATAAA	-15	NA	18695289	18690767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_18690775_18690974_18691413_18692286_18692446_18694073_18694158_18695220
ENSMUSG00000022706.17_18690976_18695289_1	chr16	-	744	4	NNC	ENSMUSG00000022706.17	novel	778	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_2	797.017077748164	2203	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGAGTATCTGTCTTTTG	NA	False	NA	-24	True	AATAAA	-7	NA	18695289	18690975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_18691413_18692286_18692441_18694073_18694158_18695220
ENSMUSG00000022706.17_18690976_18695289_2	chr16	-	749	4	FSM	ENSMUSG00000022706.17	ENSMUST00000023391.16	1280	4	323	208	0	0	multi-exon	FALSE	canonical	3	1642	junction_3	87.6711025493704	11297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGAGTATCTGTCTTTTG	NA	False	NA	-24	True	AATAAA	-7	NA	18695289	18690975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_18691413_18692286_18692446_18694073_18694158_18695220
ENSMUSG00000022710.18_8507459_8512319_1	chr16	-	2006	9	ISM	ENSMUSG00000022710.18	ENSMUST00000162445.9	3447	32	27201	-1185	3126	0	3prime_fragment	FALSE	canonical	2	677	junction_5	114.595416029613	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGCTGTGGAAGCCGAG	NA	False	NA	NA	False	AATAAA	-26	NA	8512319	8507458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276
ENSMUSG00000022710.18_8508439_8512319_1	chr16	-	1026	9	ISM	ENSMUSG00000022710.18	ENSMUST00000162445.9	3447	32	27201	-205	3126	205	3prime_fragment	FALSE	canonical	2	677	junction_5	114.595416029613	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGGATGCCAATGAGAGT	NA	False	NA	NA	False	TATAAA	-1	NA	8512319	8508438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276
ENSMUSG00000022710.18_8522809_8610236_1	chr16	-	1376	11	ISM	ENSMUSG00000022710.18	ENSMUST00000160405.8	4745	32	-64	15350	-64	0	5prime_fragment	FALSE	canonical	3	419	junction_10	153.65858257839	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGGAAAGAAAAACAGTA	NA	False	NA	NA	False	NA	NA	NA	8610236	8522808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8610099
ENSMUSG00000022710.18_8566586_8601244_1	chr16	-	641	3	NNC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	8928	-42762	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_1	15	613	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCCTGAGTATCACTTTT	NA	False	NA	NA	False	NA	NA	NA	8601244	8566585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_8566919_8574679_8574937_8601193
ENSMUSG00000022710.18_8566586_8601244_2	chr16	-	636	3	NNC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	8928	-42762	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	34	578	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCCTGAGTATCACTTTT	NA	False	NA	NA	False	NA	NA	NA	8601244	8566585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_8566919_8574679_8574932_8601193
ENSMUSG00000022710.18_8566586_8601244_3	chr16	-	880	3	NNC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	8928	-42762	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	32.5	1331	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCCTGAGTATCACTTTT	NA	False	NA	NA	False	NA	NA	NA	8601244	8566585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_8566919_8574679_8574937_8600954
ENSMUSG00000022711.17_8455602_8469535_1	chr16	+	810	7	ISM	ENSMUSG00000022711.17	ENSMUST00000023396.10	1842	9	64	5860	0	244	5prime_fragment	FALSE	canonical	3	143	junction_5	24.6153745993569	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGCTTTATGATTCTGC	NA	False	NA	NA	False	NA	NA	NA	8455601	8469535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745_8466822_8469273
ENSMUSG00000022711.17_8455602_8476355_1	chr16	+	1259	9	NNC	ENSMUSG00000022711.17	novel	1842	9	NA	NA	0	960	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	59.023300483792	101	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTAGAAGCACACTGTAAGA	NA	False	NA	NA	False	AATAAA	-13	NA	8455601	8476355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8475898
ENSMUSG00000022721.20_18057648_18066596_1	chr16	+	1080	6	NNC	ENSMUSG00000022721.20	novel	2805	11	NA	NA	-8895	-1516	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	26946	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGCAGTGATTCAAAACCAG	4735	False	NA	NA	False	NA	NA	NA	18057647	18066596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065285_18066411
ENSMUSG00000022721.20_18057841_18066596_1	chr16	+	887	6	NNC	ENSMUSG00000022721.20	novel	2805	11	NA	NA	-8702	-1516	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7566	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGCAGTGATTCAAAACCAG	4928	False	NA	NA	False	NA	NA	NA	18057840	18066596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065285_18066411
ENSMUSG00000022721.20_18057841_18066596_2	chr16	+	892	6	NIC	ENSMUSG00000022721.20	novel	2805	11	NA	NA	-8702	-1516	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	19421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGCAGTGATTCAAAACCAG	4928	False	NA	NA	False	NA	NA	NA	18057840	18066596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
ENSMUSG00000022723.17_59292138_59312035_1	chr16	-	1816	9	NIC	ENSMUSG00000022723.17	novel	4378	7	NA	NA	33942	19000	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACGCGACCCCGCCCACG	NA	False	NA	NA	False	NA	NA	NA	59312035	59292137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_59292309_59295872_59296333_59299532_59299653_59300653_59300783_59303367_59303472_59306895_59306999_59307790_59307963_59309707_59309797_59311567
ENSMUSG00000022724.16_59292138_59312539_1	chr16	+	1874	10	FSM	ENSMUSG00000022724.16	ENSMUST00000023407.12	2159	10	0	285	0	-115	multi-exon	FALSE	canonical	3	227	junction_9	29.2042614850793	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGCTCGTCTTGCTTCTT	NA	False	NA	13	True	CATAAA	-15	NA	59292137	59312539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_59292309_59295872_59296333_59299532_59299653_59300653_59300783_59303367_59303472_59306895_59306999_59307790_59307963_59309707_59309797_59311567_59311658_59312103
ENSMUSG00000022724.16_59292138_59312660_1	chr16	+	1995	10	FSM	ENSMUSG00000022724.16	ENSMUST00000023407.12	2159	10	0	164	0	6	multi-exon	FALSE	canonical	3	227	junction_9	29.2042614850793	861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACATATCTTTGAGCATA	NA	False	NA	NA	False	AATAAA	-28	NA	59292137	59312660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_59292309_59295872_59296333_59299532_59299653_59300653_59300783_59303367_59303472_59306895_59306999_59307790_59307963_59309707_59309797_59311567_59311658_59312103
ENSMUSG00000022744.13_58548386_58554614_3	chr16	+	2085	6	FSM	ENSMUSG00000022744.13	ENSMUST00000162057.8	1540	6	98	-643	0	0	multi-exon	FALSE	canonical	3	12	junction_1	183.824916700648	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTGAGATCACAACATG	NA	False	NA	24	True	AATAAA	-31	NA	58548385	58554614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_58548448_58549535_58549587_58549800_58550111_58551664_58551776_58552943_58553082_58553201
ENSMUSG00000022744.13_58548386_58554614_4	chr16	+	2029	5	NNC	ENSMUSG00000022744.13	novel	2147	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_1	169.194230102566	798	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTGAGATCACAACATG	NA	False	NA	24	True	AATAAA	-31	NA	58548385	58554614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_58548448_58549805_58550111_58551664_58551776_58552943_58553082_58553201
ENSMUSG00000022748.9_57122363_57143906_1	chr16	-	969	9	ISM	ENSMUSG00000022748.9	ENSMUST00000114371.5	1150	10	283303	0	283233	0	3prime_fragment	TRUE	canonical	3	200	junction_5	23.459739448681	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACAGTTTCTCTTTCCCCT	NA	False	NA	-9	True	AATAAA	-32	NA	57143906	57122362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_57122646_57124042_57124132_57127188_57127277_57127731_57127793_57131615_57131719_57133020_57133081_57136524_57136655_57138268_57138344_57143826
ENSMUSG00000022748.9_57381419_57427166_1	chr16	-	845	2	FSM	ENSMUSG00000022748.9	ENSMUST00000232413.2	529	2	61	-377	-27	377	multi-exon	FALSE	canonical	3	94	junction_1	0	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGCATCCCACTTTATTA	NA	False	NA	NA	False	AATAAA	-25	NA	57427166	57381418	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_57382126_57427028
ENSMUSG00000022751.10_56977168_56987716_1	chr16	-	1167	10	FSM	ENSMUSG00000022751.10	ENSMUST00000023432.10	1286	10	-21	140	-12	0	multi-exon	FALSE	canonical	3	674	junction_8	39.9499687108764	3379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGTTTCCATGTGTGGT	NA	False	NA	71	True	ATTAAA	-16	NA	56987716	56977167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_56977530_56977846_56977903_56979780_56979880_56980429_56980509_56981492_56981568_56982053_56982148_56983880_56983970_56984560_56984682_56986460_56986580_56987643
ENSMUSG00000022751.10_56977376_56987716_1	chr16	-	959	10	FSM	ENSMUSG00000022751.10	ENSMUST00000023432.10	1286	10	-21	348	-12	0	multi-exon	FALSE	canonical	3	674	junction_8	39.9499687108764	1769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTTTTTTGGAGGGAGG	NA	False	NA	-137	True	NA	NA	NA	56987716	56977375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_56977530_56977846_56977903_56979780_56979880_56980429_56980509_56981492_56981568_56982053_56982148_56983880_56983970_56984560_56984682_56986460_56986580_56987643
ENSMUSG00000022752.10_56970273_56973395_1	chr16	+	483	2	ISM	ENSMUSG00000022752.10	ENSMUST00000166897.3	5964	12	28207	3673	-3350	-2853	3prime_fragment	FALSE	canonical	3	1517	junction_1	0	345	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGTTTTTTTTTTTTAA	NA	False	NA	18	True	AATAAA	-15	NA	56970272	56973395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_56970306_56972945
ENSMUSG00000022752.10_56977029_56987716_2	chr16	+	1299	10	NNC	ENSMUSG00000022752.10	novel	5964	12	NA	NA	3406	10648	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4009	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCGGGGCCGAGCCGCGC	NA	False	NA	NA	False	NA	NA	NA	56977028	56987716	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_56977530_56977846_56977896_56979780_56979880_56980429_56980509_56981492_56981568_56982053_56982148_56983880_56983970_56984560_56984682_56986460_56986580_56987643
ENSMUSG00000022760.18_17345942_17348520_1	chr16	-	1231	3	ISM	ENSMUSG00000022760.18	ENSMUST00000231424.2	895	4	135	-173	0	0	3prime_fragment	FALSE	canonical	3	101	junction_1	8.5	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	7666	False	NA	1	True	AATAAA	-19	NA	17348520	17345941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_17346605_17346798_17346940_17348093
ENSMUSG00000022760.18_17345942_17348627_1	chr16	-	1046	4	ISM	ENSMUSG00000022760.18	ENSMUST00000232114.2	1120	5	349	-108	-11	0	3prime_fragment	FALSE	canonical	2	7	junction_3	48.8148429157453	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	7559	False	NA	1	True	AATAAA	-19	NA	17348627	17345941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348541
ENSMUSG00000022760.18_17345942_17348919_1	chr16	-	941	2	FSM	ENSMUSG00000022760.18	ENSMUST00000232041.2	766	2	-3	-172	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	7267	False	NA	1	True	AATAAA	-19	NA	17348919	17345941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_17346605_17348641
ENSMUSG00000022760.18_17345942_17348919_2	chr16	-	1238	4	FSM	ENSMUSG00000022760.18	ENSMUST00000231288.2	734	4	0	-504	0	0	multi-exon	FALSE	canonical	3	86	junction_3	13.0724477007517	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	7267	False	NA	1	True	AATAAA	-19	NA	17348919	17345941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641
ENSMUSG00000022761.13_17326837_17343855_1	chr16	+	2767	21	FSM	ENSMUSG00000022761.13	ENSMUST00000023444.11	3394	21	285	342	0	2	multi-exon	FALSE	canonical	2	77	junction_5	14.8690113995518	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTCTGTCAGGAGCCATT	NA	False	NA	10	True	AATAAA	-23	NA	17326836	17343855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_17327083_17327489_17327553_17329929_17329987_17333671_17333752_17333837_17333947_17335319_17335404_17336380_17336439_17337250_17337391_17338299_17338502_17338754_17338911_17339308_17339420_17340020_17340114_17340244_17340341_17340421_17340588_17340831_17341002_17341140_17341298_17341959_17342087_17342171_17342322_17343102_17343209_17343286_17343368_17343540
ENSMUSG00000022765.11_17223850_17246271_1	chr16	+	1027	5	FSM	ENSMUSG00000022765.11	ENSMUST00000023449.11	3447	5	0	2420	0	-2420	multi-exon	FALSE	canonical	3	88	junction_2	7.59522876548166	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGGTCTTTGAAATATTA	1384	False	NA	16	True	AATATA	-14	NA	17223849	17246271	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_17224224_17237127_17237325_17240329_17240416_17244900_17245006_17246006
ENSMUSG00000022765.11_17223850_17247193_1	chr16	+	1949	5	FSM	ENSMUSG00000022765.11	ENSMUST00000023449.11	3447	5	0	1498	0	-1498	multi-exon	FALSE	canonical	3	88	junction_2	7.59522876548166	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACACCTGACTATCTTAAA	1384	False	NA	NA	False	AATAAA	-16	NA	17223849	17247193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_17224224_17237127_17237325_17240329_17240416_17244900_17245006_17246006
ENSMUSG00000022771.18_16906515_16929100_1	chr16	-	1726	19	NNC	ENSMUSG00000022771.18	novel	3088	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	175.044756181574	1290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGGGTCCAGTTTGAGC	NA	False	NA	-35	True	AATAAA	-13	NA	16929100	16906514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16910065_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
ENSMUSG00000022773.20_16888093_16902724_1	chr16	+	913	5	FSM	ENSMUSG00000022773.20	ENSMUST00000035682.16	3322	5	533	1876	0	258	multi-exon	FALSE	canonical	0	0	junction_2	19.0705925445435	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCCTAGTGAATACTTTC	NA	False	NA	NA	False	NA	NA	NA	16888092	16902724	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_16888228_16895638_16895919_16899461_16899506_16899931_16900041_16902379
ENSMUSG00000022773.20_16904539_16929100_1	chr16	+	2192	21	NIC	ENSMUSG00000022773.20	novel	1082	6	NA	NA	8839	24191	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCCGGAGATCGACGCAC	7961	False	NA	NA	False	NA	NA	NA	16904538	16929100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
ENSMUSG00000022774.14_31767424_31775973_1	chr16	+	655	4	NNC	ENSMUSG00000022774.14	novel	2070	4	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	195.632876128278	1840	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACGCCTTTAACTCTAGTC	NA	False	NA	14	True	ATTAAA	-15	NA	31767423	31775973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_31767546_31772942_31773125_31775108_31775243_31775756
ENSMUSG00000022774.14_31767424_31775973_2	chr16	+	660	4	FSM	ENSMUSG00000022774.14	ENSMUST00000023460.7	2070	4	93	1317	0	7	multi-exon	FALSE	canonical	3	415	junction_1	12.2565175405668	1949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACGCCTTTAACTCTAGTC	NA	False	NA	14	True	ATTAAA	-15	NA	31767423	31775973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_31767546_31772942_31773125_31775108_31775248_31775756
ENSMUSG00000022774.14_31767424_31777003_1	chr16	+	1690	4	FSM	ENSMUSG00000022774.14	ENSMUST00000023460.7	2070	4	93	287	0	-287	multi-exon	FALSE	canonical	3	415	junction_1	12.2565175405668	3273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCGGAGTCTCGCTAGTT	NA	False	NA	NA	False	AATAAA	-22	NA	31767423	31777003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_31767546_31772942_31773125_31775108_31775248_31775756
ENSMUSG00000022779.17_16688631_16710854_1	chr16	+	2861	18	NIC	ENSMUSG00000022779.17	novel	3073	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	287	junction_1	39.4304608859032	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGGACCTTTTACTG	NA	False	NA	NA	False	ATTAAA	-32	NA	16688630	16710854	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_16688694_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ENSMUSG00000022781.9_31870993_31898006_1	chr16	-	310	2	ISM	ENSMUSG00000022781.9	ENSMUST00000023467.9	5741	15	154	35885	154	-19090	5prime_fragment	FALSE	canonical	3	250	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATAGCTGCTATAATTTC	NA	False	NA	0	True	AAAAAG	-2	NA	31898006	31870992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_31871202_31897905
ENSMUSG00000022789.16_16130110_16176815_1	chr16	-	4005	19	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	286	junction_4	248.941642474747	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTGCCAGTAAGTGAATT	NA	False	NA	-23	True	AATAAA	-13	NA	16176815	16130109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000022789.16_16130110_16176815_2	chr16	-	3960	19	NIC	ENSMUSG00000022789.16	novel	2151	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	332	junction_5	248.085384544699	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTGCCAGTAAGTGAATT	NA	False	NA	-23	True	AATAAA	-13	NA	16176815	16130109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000022789.16_16131247_16176815_1	chr16	-	2868	19	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	286	junction_4	248.941642474747	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGAAAATTTAATGACTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16176815	16131246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000022789.16_16131247_16176815_2	chr16	-	2823	19	NIC	ENSMUSG00000022789.16	novel	2151	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	332	junction_5	248.085384544699	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGAAAATTTAATGACTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16176815	16131246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000022789.16_16131247_16176815_3	chr16	-	2790	18	FSM	ENSMUSG00000022789.16	ENSMUST00000023477.15	3951	18	8	1153	0	0	multi-exon	FALSE	canonical	3	164	junction_4	261.707977990631	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGAAAATTTAATGACTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16176815	16131246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000022789.16_16131698_16176815_2	chr16	-	2417	19	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	0	153	combination_of_known_splicesites	FALSE	canonical	3	286	junction_4	248.941642474747	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACATGTTTAATTCACATT	NA	False	NA	-15	True	AAAACA	-3	NA	16176815	16131697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000022789.16_16131698_16176815_3	chr16	-	2372	19	NIC	ENSMUSG00000022789.16	novel	2151	19	NA	NA	0	153	combination_of_known_junctions	FALSE	canonical	3	332	junction_5	248.085384544699	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACATGTTTAATTCACATT	NA	False	NA	-15	True	AAAACA	-3	NA	16176815	16131697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000022789.16_16163880_16176815_1	chr16	-	318	2	ISM	ENSMUSG00000022789.16	ENSMUST00000230038.2	1074	6	0	9532	0	-9532	5prime_fragment	FALSE	canonical	3	1358	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACAGGAGAAGAAAATGGT	NA	False	NA	NA	False	GATAAA	-8	NA	16176815	16163879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_16164010_16176627
ENSMUSG00000022792.17_16121417_16127496_1	chr16	+	956	5	FSM	ENSMUSG00000022792.17	ENSMUST00000159683.2	1528	5	572	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	137.095769446034	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTCTTTACACAAGAACAA	NA	False	NA	16	True	AATAAA	-21	NA	16121416	16127496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_16121612_16122399_16122568_16124361_16124483_16125073_16125245_16127195
ENSMUSG00000022793.18_38562626_38589211_1	chr16	+	2104	7	FSM	ENSMUSG00000022793.18	ENSMUST00000023482.13	2304	7	0	200	0	1	multi-exon	TRUE	canonical	3	15	junction_1	6.0184900284226	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTGGTCTTGTTTTTTT	3912	False	NA	8	True	AGTAAA	-18	NA	38562625	38589211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_38562731_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583554_38586276_38586382_38588259
ENSMUSG00000022797.17_32427801_32449198_1	chr16	+	2413	19	FSM	ENSMUSG00000022797.17	ENSMUST00000023486.15	4890	19	63	2414	0	-2410	multi-exon	FALSE	canonical	3	399	junction_9	25.3592094942417	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGTGTTGGTTGTGCTA	8020	False	NA	24	True	ATTAAA	-25	NA	32427800	32449198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
ENSMUSG00000022800.15_32698183_32717621_1	chr16	+	734	5	NIC	ENSMUSG00000022800.15	novel	1015	5	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	7	junction_4	276.059210134348	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGATTTCTGTATTAATTG	NA	False	NA	NA	False	AATAAA	-17	NA	32698182	32717621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32717462
ENSMUSG00000022800.15_32698183_32726233_1	chr16	+	1268	9	FSM	ENSMUSG00000022800.15	ENSMUST00000023489.11	4312	9	32	3012	0	84	multi-exon	FALSE	canonical	3	485	junction_4	65.3632876697615	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATTCTCTGTTGACTTCT	NA	False	NA	NA	False	AATATA	-41	NA	32698182	32726233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32718841_32719247_32719310_32721002_32721078_32722788_32722916_32725901
ENSMUSG00000022800.15_32698183_32726814_1	chr16	+	1849	9	FSM	ENSMUSG00000022800.15	ENSMUST00000023489.11	4312	9	32	2431	0	0	multi-exon	FALSE	canonical	3	485	junction_4	65.3632876697615	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGTTGACTTCTGTCCT	NA	False	NA	15	True	AATAAA	-22	NA	32698182	32726814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32718841_32719247_32719310_32721002_32721078_32722788_32722916_32725901
ENSMUSG00000022800.15_32698183_32728423_1	chr16	+	3458	9	FSM	ENSMUSG00000022800.15	ENSMUST00000023489.11	4312	9	32	822	0	-822	multi-exon	FALSE	canonical	3	485	junction_4	65.3632876697615	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGAGTTGTGGTTTTTTA	NA	False	NA	16	True	AATAAA	-39	NA	32698182	32728423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32718841_32719247_32719310_32721002_32721078_32722788_32722916_32725901
ENSMUSG00000022805.18_38118116_38125242_1	chr16	-	885	4	ISM	ENSMUSG00000022805.18	ENSMUST00000023501.16	3048	17	37263	0	36932	0	3prime_fragment	FALSE	canonical	3	28	junction_1	8.01387685344754	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACGTTGTTTGTAAAGCT	NA	False	NA	-3	True	AATAAA	-16	NA	38125242	38118115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_38118658_38122329_38122422_38122978_38123128_38125140
ENSMUSG00000022808.6_33071814_33119032_1	chr16	+	1554	14	FSM	ENSMUSG00000022808.6	ENSMUST00000023502.6	3161	14	0	1607	0	-903	multi-exon	FALSE	canonical	3	473	junction_8	41.4737387501677	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGGGACTGGTGCTGA	9283	False	NA	4	True	AATAAA	-15	NA	33071813	33119032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_33071972_33084628_33084751_33087119_33087256_33088387_33088538_33090025_33090074_33097311_33097368_33101002_33101076_33104779_33104842_33106356_33106423_33108061_33108152_33110468_33110569_33112110_33112257_33115010_33115126_33118800
ENSMUSG00000022808.6_33071814_33119935_1	chr16	+	2457	14	FSM	ENSMUSG00000022808.6	ENSMUST00000023502.6	3161	14	0	704	0	0	multi-exon	FALSE	canonical	3	473	junction_8	41.4737387501677	681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGTATTATTTTAAGAT	9283	False	NA	26	True	AATAAA	-26	NA	33071813	33119935	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_33071972_33084628_33084751_33087119_33087256_33088387_33088538_33090025_33090074_33097311_33097368_33101002_33101076_33104779_33104842_33106356_33106423_33108061_33108152_33110468_33110569_33112110_33112257_33115010_33115126_33118800
ENSMUSG00000022808.6_33071814_33120075_1	chr16	+	2597	14	FSM	ENSMUSG00000022808.6	ENSMUST00000023502.6	3161	14	0	564	0	140	multi-exon	FALSE	canonical	3	473	junction_8	41.4737387501677	695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTGTTATGGTTTTGC	9283	False	NA	8	True	ACTAAA	-18	NA	33071813	33120075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_33071972_33084628_33084751_33087119_33087256_33088387_33088538_33090025_33090074_33097311_33097368_33101002_33101076_33104779_33104842_33106356_33106423_33108061_33108152_33110468_33110569_33112110_33112257_33115010_33115126_33118800
ENSMUSG00000022814.7_33776967_33787373_1	chr16	-	1626	6	NNC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	0	-1803	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	469.825329244816	4170	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAAGACTGGTATTTGTT	8675	False	NA	NA	False	NA	NA	NA	33787373	33776966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782603_33784141_33784296_33787195
ENSMUSG00000022814.7_33776967_33787373_2	chr16	-	1480	5	FSM	ENSMUSG00000022814.7	ENSMUST00000131990.2	3283	5	0	1803	0	-1803	multi-exon	FALSE	canonical	3	47	junction_4	482.354123025812	1596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAAGACTGGTATTTGTT	8675	False	NA	NA	False	NA	NA	NA	33787373	33776966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33787195
ENSMUSG00000022814.7_33776967_33787373_3	chr16	-	1519	5	NIC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	0	-1803	combination_of_known_splicesites	FALSE	canonical	3	20	junction_1	532.568305478274	2574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAAGACTGGTATTTGTT	8675	False	NA	NA	False	NA	NA	NA	33787373	33776966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_33777306_33780546_33780723_33781938_33782611_33784141_33784296_33787195
ENSMUSG00000022816.12_37597417_37654476_1	chr16	+	1207	11	FSM	ENSMUSG00000022816.12	ENSMUST00000114763.3	3789	11	182	2400	0	-312	multi-exon	FALSE	canonical	3	116	junction_9	10.1607086367044	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGTAGGAATGCTTTAAGA	5333	False	NA	NA	False	NA	NA	NA	37597416	37654476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_37597515_37597655_37597713_37636067_37636173_37639265_37639396_37641517_37641551_37642962_37643094_37647087_37647207_37649068_37649182_37649475_37649587_37651918_37651996_37654243
ENSMUSG00000022820.5_37467963_37474729_1	chr16	-	307	2	NIC	ENSMUSG00000022820.5	novel	465	2	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	1	5	junction_1	0	886	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTTCTTTTTCTTGGAT	NA	False	NA	-2	True	AATAAA	-23	NA	37474729	37467962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_37468082_37474541
ENSMUSG00000022822.17_20217567_20245074_1	chr16	-	1272	8	ISM	ENSMUSG00000022822.17	ENSMUST00000115547.9	5372	31	11	67511	0	0	5prime_fragment	FALSE	canonical	3	160	junction_3	84.1085304708101	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGTGAGTTTAAAGACTT	NA	False	NA	NA	False	ATTAAA	-37	NA	20245074	20217566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_20217711_20218224_20218399_20218555_20218790_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
ENSMUSG00000022822.17_20223412_20245074_1	chr16	-	624	5	FSM	ENSMUSG00000022822.17	ENSMUST00000134962.2	4526	5	0	3902	0	1080	multi-exon	FALSE	canonical	3	182	junction_2	11.3578166916005	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGCGAAGGGTTGTGTG	NA	False	NA	NA	False	AATGAA	-19	NA	20245074	20223411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
ENSMUSG00000022837.15_36648769_36679934_1	chr16	+	1605	13	NIC	ENSMUSG00000022837.15	novel	2797	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	67.3747294366862	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAAGTCTGAAAGCATG	NA	False	NA	15	True	NA	NA	NA	36648768	36679934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36679723
ENSMUSG00000022837.15_36648769_36679934_2	chr16	+	1658	13	NIC	ENSMUSG00000022837.15	novel	2257	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	130	junction_12	42.1751473685102	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAAGTCTGAAAGCATG	NA	False	NA	15	True	NA	NA	NA	36648768	36679934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36679723
ENSMUSG00000022837.15_36648769_36693083_1	chr16	+	2213	15	NIC	ENSMUSG00000022837.15	novel	2797	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	69.4050518657669	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCATGTTATTTCAATGTT	NA	False	NA	52	True	AATAAA	-19	NA	36648768	36693083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
ENSMUSG00000022837.15_36678883_36693083_1	chr16	+	902	4	ISM	ENSMUSG00000022837.15	ENSMUST00000023535.4	2257	15	30113	-8	6928	0	3prime_fragment	FALSE	canonical	3	136	junction_3	3.55902608401044	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCATGTTATTTCAATGTT	NA	False	NA	52	True	AATAAA	-19	NA	36678882	36693083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_36678966_36687920_36688053_36691812_36691970_36692553
ENSMUSG00000022838.15_36614107_36648573_1	chr16	-	884	5	NIC	ENSMUSG00000022838.15	novel	1030	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_4	5.24404424085076	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTTGGTATTCTCATGT	8250	False	NA	NA	False	AATAAA	-22	NA	36648573	36614106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_36614289_36620948_36621207_36628376_36628523_36630833_36630971_36648412
ENSMUSG00000022841.16_20354299_20362657_1	chr16	+	1867	11	NNC	ENSMUSG00000022841.16	novel	2080	11	NA	NA	0	-149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	839.977833040849	4183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTGGCTAAATGTTAAT	1424	False	NA	NA	False	AATAAA	-13	NA	20354298	20362657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359717_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
ENSMUSG00000022841.16_20354299_20362657_2	chr16	+	1855	11	NNC	ENSMUSG00000022841.16	novel	2080	11	NA	NA	0	-149	at_least_one_novel_splicesite	FALSE	canonical	1	37	junction_5	1070.863525385	4131	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTGGCTAAATGTTAAT	1424	False	NA	NA	False	AATAAA	-13	NA	20354298	20362657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359724_20359861_20359964_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
ENSMUSG00000022841.16_20354299_20362657_3	chr16	+	1860	11	FSM	ENSMUSG00000022841.16	ENSMUST00000090023.13	2080	11	71	149	0	-149	multi-exon	FALSE	canonical	3	142	junction_4	799.773617969485	4179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTGGCTAAATGTTAAT	1424	False	NA	NA	False	AATAAA	-13	NA	20354298	20362657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359724_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
ENSMUSG00000022844.9_35217682_35311253_1	chr16	-	1812	17	NNC	ENSMUSG00000022844.9	novel	1809	17	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	140.085897197934	910	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGGTAGAGTATGTTT	NA	False	NA	-10	True	AATAAA	-14	NA	35311253	35217681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_35217909_35218646_35218782_35224382_35224454_35228003_35228128_35230663_35230825_35231296_35231368_35243235_35243373_35250102_35250175_35250262_35250355_35258482_35258551_35269772_35269834_35273820_35273914_35276465_35276512_35276831_35276916_35284704_35284793_35286900_35287028_35311098
ENSMUSG00000022849.6_35590745_35645918_1	chr16	+	1772	9	NNC	ENSMUSG00000022849.6	novel	4680	9	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_4	249.638457323787	3732	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCCAGCCACTTCCAAAT	5404	False	NA	107	True	NA	NA	NA	35590744	35645918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634414_35634699_35634780_35637521_35637694_35639048_35639133_35645058_35645170_35645252
ENSMUSG00000022855.10_21867445_21868019_1	chr16	+	526	2	NNC	ENSMUSG00000022855.10	novel	4499	17	NA	NA	20136	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGAGTGCTTTATGCTTGT	NA	False	NA	35	True	AGTAAA	-42	NA	21867444	21868019	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_21867654_21867702
ENSMUSG00000022858.17_22064503_22067245_1	chr16	-	1248	3	ISM	ENSMUSG00000022858.17	ENSMUST00000023564.10	1369	8	6752	-695	3358	695	3prime_fragment	TRUE	canonical	3	2015	junction_2	44.5	3872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGGCCAAGTAGAACTGG	8870	False	NA	-13	True	ATTAAA	-16	NA	22067245	22064502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_22065617_22065939_22066014_22067185
ENSMUSG00000022858.17_22064503_22084676_1	chr16	-	2120	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	79	1204	0	695	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	10319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGGCCAAGTAGAACTGG	NA	False	NA	-13	True	ATTAAA	-16	NA	22084676	22064502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
ENSMUSG00000022858.17_22064503_22084676_2	chr16	-	2396	10	FSM	ENSMUSG00000022858.17	ENSMUST00000162413.9	1687	10	0	-709	0	695	multi-exon	FALSE	canonical	3	442	junction_8	660.884723143114	9809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGGCCAAGTAGAACTGG	NA	False	NA	-13	True	ATTAAA	-16	NA	22084676	22064502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
ENSMUSG00000022858.17_22064613_22067245_1	chr16	-	1138	3	ISM	ENSMUSG00000022858.17	ENSMUST00000023564.10	1369	8	6752	-585	3358	585	3prime_fragment	FALSE	canonical	3	2015	junction_2	44.5	2388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTGTTGGTTTTCTTTTT	8870	False	NA	-20	True	AATAAA	-38	NA	22067245	22064612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_22065617_22065939_22066014_22067185
ENSMUSG00000022858.17_22064613_22084676_1	chr16	-	2286	10	FSM	ENSMUSG00000022858.17	ENSMUST00000162413.9	1687	10	0	-599	0	585	multi-exon	FALSE	canonical	3	442	junction_8	660.884723143114	7708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTGTTGGTTTTCTTTTT	NA	False	NA	-20	True	AATAAA	-38	NA	22084676	22064612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
ENSMUSG00000022858.17_22064613_22084676_2	chr16	-	2010	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	79	1314	0	585	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	8871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTGTTGGTTTTCTTTTT	NA	False	NA	-20	True	AATAAA	-38	NA	22084676	22064612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
ENSMUSG00000022858.17_22065212_22067245_1	chr16	-	539	3	ISM	ENSMUSG00000022858.17	ENSMUST00000023564.10	1369	8	6752	14	3358	0	3prime_fragment	FALSE	canonical	3	2015	junction_2	44.5	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTTCTTTCTAAATATC	8870	False	NA	-20	True	AATAAA	-14	NA	22067245	22065211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_22065617_22065939_22066014_22067185
ENSMUSG00000022858.17_22077789_22084676_1	chr16	-	409	2	FSM	ENSMUSG00000022858.17	ENSMUST00000160579.2	1376	2	-8	975	0	-924	multi-exon	FALSE	canonical	3	646	junction_1	0	791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAATGAAGTTAAGATAA	NA	False	NA	NA	False	NA	NA	NA	22084676	22077788	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_22078012_22084490
ENSMUSG00000022858.17_22077913_22084676_1	chr16	-	285	2	FSM	ENSMUSG00000022858.17	ENSMUST00000160579.2	1376	2	-8	1099	0	-1048	multi-exon	FALSE	canonical	3	646	junction_1	0	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGAAAGAATGCATGCT	NA	False	NA	NA	False	NA	NA	NA	22084676	22077912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_22078012_22084490
ENSMUSG00000022861.18_22367055_22368340_1	chr16	-	457	4	NNC	ENSMUSG00000022861.18	novel	2651	20	NA	NA	107438	181	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGAGCGAAAGGCTCTGC	NA	False	NA	NA	False	NA	NA	NA	22368340	22367054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_22367125_22367243_22367331_22367420_22367502_22368121
ENSMUSG00000022861.18_22367055_22368793_1	chr16	-	910	4	NNC	ENSMUSG00000022861.18	novel	2651	20	NA	NA	106985	181	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGAGCGAAAGGCTCTGC	NA	False	NA	NA	False	NA	NA	NA	22368793	22367054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_22367125_22367243_22367331_22367420_22367502_22368121
ENSMUSG00000022864.15_78340431_78373545_1	chr16	-	2922	5	FSM	ENSMUSG00000022864.15	ENSMUST00000232052.2	6127	5	0	3205	0	0	multi-exon	FALSE	canonical	3	120	junction_4	82.0381009043969	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATACT	3243	False	NA	NA	False	NA	NA	NA	78373545	78340430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373078
ENSMUSG00000022864.15_78341577_78373545_1	chr16	-	1776	5	FSM	ENSMUSG00000022864.15	ENSMUST00000232052.2	6127	5	0	4351	0	0	multi-exon	FALSE	canonical	3	120	junction_4	82.0381009043969	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTGCTATTTTGGGTAT	3243	False	NA	NA	False	TATAAA	-12	NA	78373545	78341576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373078
ENSMUSG00000022864.15_78341849_78373545_2	chr16	-	1304	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114219.8	1576	5	0	272	0	0	multi-exon	FALSE	canonical	3	32	junction_4	120.034370077907	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCAGGGTTACTCAATCA	3243	False	NA	-4	True	AATAAA	-13	NA	78373545	78341848	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373278
ENSMUSG00000022864.15_78341849_78373545_3	chr16	-	1504	5	FSM	ENSMUSG00000022864.15	ENSMUST00000232052.2	6127	5	0	4623	0	0	multi-exon	FALSE	canonical	3	120	junction_4	82.0381009043969	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCAGGGTTACTCAATCA	3243	False	NA	-4	True	AATAAA	-13	NA	78373545	78341848	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373078
ENSMUSG00000022868.7_22713008_22718193_1	chr16	+	1260	6	ISM	ENSMUSG00000022868.7	ENSMUST00000232556.2	1336	7	1851	0	-501	0	3prime_fragment	FALSE	canonical	3	93	junction_1	9.66643677887566	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCATGTTCCTTGTCT	NA	False	NA	22	True	NA	NA	NA	22713007	22718193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_22713186_22713544_22713630_22713943_22714108_22715257_22715360_22716877_22716962_22717546
ENSMUSG00000022871.14_22737994_22758507_1	chr16	+	1402	8	NNC	ENSMUSG00000022871.14	novel	1572	8	NA	NA	745	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	207.736685764082	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTCAACCTGTTGAC	NA	False	NA	14	True	AATAAA	-20	NA	22737993	22758507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_22738102_22747824_22748064_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ENSMUSG00000022871.14_22750432_22758507_1	chr16	+	1161	6	NNC	ENSMUSG00000022871.14	novel	1572	8	NA	NA	9937	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	187.111731326499	226	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTCAACCTGTTGAC	NA	False	NA	14	True	AATAAA	-20	NA	22750431	22758507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_22750649_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ENSMUSG00000022881.16_22926508_22932697_2	chr16	-	1885	11	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	797	6185	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7913	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGCGGACGGCGCCGCCC	NA	False	NA	NA	False	NA	NA	NA	22932697	22926507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_22926571_22927337_22927384_22927468_22927593_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUSG00000022881.16_22926508_22932697_4	chr16	-	1883	11	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	797	6185	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6972	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGCGGACGGCGCCGCCC	NA	False	NA	NA	False	NA	NA	NA	22932697	22926507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_22926571_22927337_22927373_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUSG00000022881.16_22926508_22932697_5	chr16	-	3027	9	NIC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	797	6185	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGCGGACGGCGCCGCCC	NA	False	NA	NA	False	NA	NA	NA	22932697	22926507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
ENSMUSG00000022881.16_22926508_22932697_6	chr16	-	1899	11	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	797	6185	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGCGGACGGCGCCGCCC	NA	False	NA	NA	False	NA	NA	NA	22932697	22926507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929099_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUSG00000022881.16_22926508_22932697_7	chr16	-	1757	10	NIC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	797	6185	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGCGGACGGCGCCGCCC	NA	False	NA	NA	False	NA	NA	NA	22932697	22926507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUSG00000022881.16_22932701_22946490_1	chr16	-	1232	11	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	486.513966911537	2998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAGTGAATATACAAT	NA	False	NA	-34	True	AATAAA	-15	NA	22946490	22932700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_22932858_22932936_22933054_22933194_22933276_22933347_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
ENSMUSG00000022881.16_22932701_22946490_2	chr16	-	1095	10	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	495.822772996786	115	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAGTGAATATACAAT	NA	False	NA	-34	True	AATAAA	-15	NA	22946490	22932700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939690_22946149_22946292_22946434
ENSMUSG00000022881.16_22932701_22946490_3	chr16	-	1216	11	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	487.741119857656	3563	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAGTGAATATACAAT	NA	False	NA	-34	True	AATAAA	-15	NA	22946490	22932700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933476_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
ENSMUSG00000022881.16_22932701_22946490_4	chr16	-	1304	10	NIC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	-3	0	intron_retention	FALSE	canonical	3	1237	junction_9	143.061758225833	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAGTGAATATACAAT	NA	False	NA	-34	True	AATAAA	-15	NA	22946490	22932700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_22932858_22932936_22933054_22933194_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
ENSMUSG00000022881.16_22932701_22946490_5	chr16	-	1143	10	NIC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	2	10	junction_7	494.221597721428	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAGTGAATATACAAT	NA	False	NA	-34	True	AATAAA	-15	NA	22946490	22932700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22943285_22943365_22946149_22946292_22946434
ENSMUSG00000022881.16_22932701_22946490_6	chr16	-	1217	11	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	479.138769042957	3195	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAGTGAATATACAAT	NA	False	NA	-34	True	AATAAA	-15	NA	22946490	22932700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_22932858_22932936_22933054_22933200_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
ENSMUSG00000022881.16_22932701_22946490_7	chr16	-	1221	11	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	486.34708799375	5018	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAGTGAATATACAAT	NA	False	NA	-34	True	AATAAA	-15	NA	22946490	22932700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946286_22946430
ENSMUSG00000022881.16_22932701_22946490_8	chr16	-	1294	12	NIC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	35	junction_8	593.762439626105	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAGTGAATATACAAT	NA	False	NA	-34	True	AATAAA	-15	NA	22946490	22932700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22940979_22941051_22943285_22943365_22946149_22946292_22946434
ENSMUSG00000022881.16_22932701_22946490_9	chr16	-	1216	11	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	485.818937465389	1431	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAGTGAATATACAAT	NA	False	NA	-34	True	AATAAA	-15	NA	22946490	22932700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934602_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
ENSMUSG00000022881.16_22938060_22946470_1	chr16	-	504	5	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	-3	-1331	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	677.587079274686	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATACTTAGTTGTACAT	NA	False	NA	NA	False	NA	NA	NA	22946470	22938059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_22938227_22939658_22939739_22943285_22943365_22946149_22946292_22946434
ENSMUSG00000022884.17_22926508_22932565_1	chr16	+	1869	12	FSM	ENSMUSG00000022884.17	ENSMUST00000123413.8	1965	12	-19	115	0	-115	multi-exon	FALSE	canonical	3	179	junction_11	605.093586095477	1918	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAACTGGACCCTGTTG	6053	False	NA	13	True	NA	NA	NA	22926507	22932565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
ENSMUSG00000022884.17_22926508_22932565_2	chr16	+	1625	10	FSM	ENSMUSG00000022884.17	ENSMUST00000131871.8	1737	10	-20	132	0	-115	multi-exon	FALSE	canonical	3	441	junction_1	631.938131836603	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAACTGGACCCTGTTG	6053	False	NA	13	True	NA	NA	NA	22926507	22932565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUSG00000022884.17_22926508_22932565_3	chr16	+	1762	11	FSM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	314	132	0	-115	multi-exon	FALSE	canonical	3	1278	junction_10	308.304135554488	1663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAACTGGACCCTGTTG	6053	False	NA	13	True	NA	NA	NA	22926507	22932565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUSG00000022884.17_22926508_22932697_1	chr16	+	1894	11	FSM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	314	0	0	0	multi-exon	FALSE	canonical	3	1278	junction_10	308.304135554488	8980	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUSG00000022884.17_22926508_22932697_2	chr16	+	1868	11	NNC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_10	738.769551348727	2291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
ENSMUSG00000022884.17_22926508_22932697_3	chr16	+	2573	10	NIC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	441	junction_1	690.354516190552	1513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	AATAAA	-18	NA	22926507	22932697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
ENSMUSG00000022884.17_22932701_22946490_1	chr16	+	1223	11	NIC	ENSMUSG00000022884.17	novel	2203	10	NA	NA	3252	13604	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	8308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCGGGAGCGCGCCACGC	3055	False	NA	NA	False	NA	NA	NA	22932700	22946490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
ENSMUSG00000022889.8_84515169_84532122_1	chr16	-	1081	10	FSM	ENSMUSG00000022889.8	ENSMUST00000116584.2	2294	10	508	705	-4	-705	multi-exon	FALSE	canonical	3	703	junction_1	110.666443551761	10449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTGTCCCTGCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	84532122	84515168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_84515273_84517157_84517206_84520725_84520880_84522012_84522079_84524371_84524485_84527306_84527375_84527715_84527816_84529229_84529370_84531294_84531502_84532041
ENSMUSG00000022890.14_84624759_84631745_1	chr16	-	473	4	NNC	ENSMUSG00000022890.14	novel	809	5	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	3	545	junction_3	2933.80515144866	9172	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84631745	84624758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_84624884_84625312_84625438_84628216_84628391_84631696
ENSMUSG00000022890.14_84624759_84631745_2	chr16	-	478	4	ISM	ENSMUSG00000022890.14	ENSMUST00000023608.14	809	5	768	0	-25	0	3prime_fragment	FALSE	canonical	3	5740	junction_3	655.078790850553	51214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84631745	84624758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_84624884_84625312_84625438_84628216_84628396_84631696
ENSMUSG00000022890.14_84624759_84631893_1	chr16	-	626	4	ISM	ENSMUSG00000022890.14	ENSMUST00000023608.14	809	5	620	0	0	0	3prime_fragment	FALSE	canonical	3	5740	junction_3	655.078790850553	76172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84631893	84624758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_84624884_84625312_84625438_84628216_84628396_84631696
ENSMUSG00000022898.14_94298642_94327293_1	chr16	-	2151	8	FSM	ENSMUSG00000022898.14	ENSMUST00000023615.7	2547	8	396	0	-2	0	multi-exon	FALSE	canonical	3	328	junction_4	18.1490428150369	1004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGGACTGCATATTGT	NA	False	NA	-13	True	AATAAA	-23	NA	94327293	94298641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_94299942_94302393_94302547_94302940_94303092_94305160_94305236_94306222_94306304_94311596_94311747_94313088_94313233_94327196
ENSMUSG00000022898.14_94299326_94327293_1	chr16	-	1467	8	FSM	ENSMUSG00000022898.14	ENSMUST00000023615.7	2547	8	396	684	-2	-684	multi-exon	FALSE	canonical	3	328	junction_4	18.1490428150369	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGGTTCTCACAGAGGG	NA	False	NA	-30	True	AATAAA	-13	NA	94327293	94299325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_94299942_94302393_94302547_94302940_94303092_94305160_94305236_94306222_94306304_94311596_94311747_94313088_94313233_94327196
ENSMUSG00000022898.14_94299326_94327479_1	chr16	-	1653	8	FSM	ENSMUSG00000022898.14	ENSMUST00000023615.7	2547	8	210	684	-179	-684	multi-exon	FALSE	canonical	3	328	junction_4	18.1490428150369	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGGTTCTCACAGAGGG	NA	False	NA	-30	True	AATAAA	-13	NA	94327479	94299325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_94299942_94302393_94302547_94302940_94303092_94305160_94305236_94306222_94306304_94311596_94311747_94313088_94313233_94327196
ENSMUSG00000022898.14_94300689_94327293_1	chr16	-	973	8	NNC	ENSMUSG00000022898.14	novel	734	8	NA	NA	-2	1769	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	125.216221156911	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTACTGTTTTCC	NA	False	NA	NA	False	AATAAA	-26	NA	94327293	94300688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_94300811_94302393_94302547_94302940_94303092_94305160_94305236_94306222_94306304_94311596_94311747_94313088_94313233_94327196
ENSMUSG00000022900.15_36528579_36546677_1	chr16	+	2349	7	ISM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	14239	489	-7321	-426	3prime_fragment	FALSE	canonical	3	275	junction_4	15.8683822601914	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGAGTTTCTACTTCTAT	NA	False	NA	20	True	AATAAA	-16	NA	36528578	36546677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
ENSMUSG00000022900.15_36528579_36547109_1	chr16	+	2781	7	ISM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	14239	57	-7321	0	3prime_fragment	FALSE	canonical	3	275	junction_4	15.8683822601914	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTTTGGCAGAGGT	NA	False	NA	12	True	ATTAAA	-24	NA	36528578	36547109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
ENSMUSG00000022900.15_36528634_36530992_1	chr16	+	1301	2	ISM	ENSMUSG00000022900.15	ENSMUST00000153802.2	1922	5	14239	6775	-7266	-6775	internal_fragment	FALSE	canonical	3	311	junction_1	0	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAATTGTGGG	NA	False	NA	NA	False	NA	NA	NA	36528633	36530992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_36528783_36529840
ENSMUSG00000022905.13_35803724_35855161_1	chr16	+	2660	14	FSM	ENSMUSG00000022905.13	ENSMUST00000004054.13	5039	14	39	2340	0	-340	multi-exon	FALSE	canonical	3	400	junction_10	42.2312596300516	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGTGTGACGAGAGGCTGT	NA	False	NA	NA	False	ATTAAA	-35	NA	35803723	35855161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_35803879_35820551_35820686_35823212_35823321_35829685_35829786_35833262_35833358_35839627_35839760_35840525_35840615_35841057_35841158_35841854_35842019_35843544_35843624_35849891_35850018_35851539_35851668_35853621_35853801_35854090
ENSMUSG00000022905.13_35803724_35856387_1	chr16	+	3886	14	FSM	ENSMUSG00000022905.13	ENSMUST00000004054.13	5039	14	39	1114	0	886	multi-exon	FALSE	canonical	3	400	junction_10	42.2312596300516	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCTTGTGGCTGATTTC	NA	False	NA	10	True	AGTAAA	-21	NA	35803723	35856387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_35803879_35820551_35820686_35823212_35823321_35829685_35829786_35833262_35833358_35839627_35839760_35840525_35840615_35841057_35841158_35841854_35842019_35843544_35843624_35849891_35850018_35851539_35851668_35853621_35853801_35854090
ENSMUSG00000022912.9_62674670_62748761_1	chr16	+	2355	15	FSM	ENSMUSG00000022912.9	ENSMUST00000023629.9	3303	15	0	948	0	8	multi-exon	FALSE	canonical	3	266	junction_5	24.011476847711	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTAAATTTCAATTTATT	NA	False	NA	54	True	ATTAAA	-18	NA	62674669	62748761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_62674868_62705763_62705922_62709343_62709369_62719238_62719326_62720688_62720812_62720915_62721048_62723854_62723981_62728024_62728147_62730360_62730477_62734160_62734351_62738437_62738606_62739875_62740045_62744878_62745028_62746690_62746917_62748395
ENSMUSG00000022913.17_95781133_95792116_1	chr16	-	994	7	NNC	ENSMUSG00000022913.17	novel	1044	7	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	463.678678253235	9281	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAACTTTATTTTCTTAA	NA	False	NA	-10	True	AATAAA	-16	NA	95792116	95781132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_95781312_95783307_95783439_95784992_95785192_95788492_95788556_95789159_95789312_95790691_95790799_95791953
ENSMUSG00000022913.17_95781237_95792116_1	chr16	-	896	7	FSM	ENSMUSG00000022913.17	ENSMUST00000023630.16	1044	7	44	104	-26	0	multi-exon	FALSE	canonical	3	1101	junction_3	73.0062782688357	3586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAGGTGGCCAGGACCTG	NA	False	NA	-114	True	NA	NA	NA	95792116	95781236	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_95781312_95783301_95783439_95784992_95785192_95788492_95788556_95789159_95789312_95790691_95790799_95791953
ENSMUSG00000022938.9_97272290_97313730_1	chr16	-	1285	8	NNC	ENSMUSG00000022938.9	novel	806	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	13.697906886135	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAATGTCACAGGAGTCT	NA	False	NA	-10	True	AATAAA	-24	NA	97313730	97272289	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_97272424_97276447_97276581_97276934_97277023_97277579_97277631_97279548_97279608_97282986_97283111_97302059_97302204_97313178
ENSMUSG00000022940.18_94165306_94171396_1	chr16	-	809	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113910.8	966	5	157	0	-28	0	multi-exon	FALSE	canonical	3	214	junction_4	95.9283586850104	1760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171396	94165305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171224
ENSMUSG00000022940.18_94165306_94171571_1	chr16	-	1157	4	FSM	ENSMUSG00000022940.18	ENSMUST00000138514.2	695	4	-203	-259	0	0	multi-exon	FALSE	canonical	3	395	junction_3	26.0298973404728	1751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171571	94165305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947
ENSMUSG00000022940.18_94165494_94171396_1	chr16	-	621	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113910.8	966	5	157	188	-28	0	multi-exon	FALSE	canonical	3	214	junction_4	95.9283586850104	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTCATTTACAGTTGTGG	NA	False	NA	-8	True	TATAAA	-11	NA	94171396	94165493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171224
ENSMUSG00000022940.18_94165494_94171571_1	chr16	-	557	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113906.9	745	5	0	188	0	0	multi-exon	FALSE	canonical	3	162	junction_4	117.933243828871	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTCATTTACAGTTGTGG	NA	False	NA	-8	True	TATAAA	-11	NA	94171571	94165493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171463
ENSMUSG00000022945.13_93680812_93703003_1	chr16	+	1894	14	NNC	ENSMUSG00000022945.13	novel	1922	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	251.98687389502	1175	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGCTGACTTCGCT	4389	False	NA	21	True	AATAAA	-29	NA	93680811	93703003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_93680864_93681353_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689624_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
ENSMUSG00000022946.11_93508822_93537156_1	chr16	+	780	4	FSM	ENSMUSG00000022946.11	ENSMUST00000226335.2	1189	4	3	406	0	-406	multi-exon	FALSE	canonical	3	21	junction_1	5.24933858267454	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGACTTAAACTTCTTT	NA	False	NA	NA	False	NA	NA	NA	93508821	93537156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_93508957_93513037_93513201_93536041_93536224_93536856
ENSMUSG00000022946.11_93597077_93607476_1	chr16	+	1155	8	NIC	ENSMUSG00000022946.11	novel	7319	37	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	21.0267079919704	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTAATTGTCATGTGTATAG	5904	False	NA	20	True	AATAAA	-23	NA	93597076	93607476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_93597136_93598448_93598511_93600349_93600479_93603292_93603360_93604100_93604154_93604705_93604868_93606179_93606310_93606983
ENSMUSG00000022948.17_93380348_93383549_1	chr16	-	496	4	NNC	ENSMUSG00000022948.17	novel	600	4	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	65.576079649688	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	-4	True	AATAAA	-18	NA	93383549	93380347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_93380573_93382066_93382191_93383124_93383206_93383483
ENSMUSG00000022948.17_93380348_93383549_2	chr16	-	667	4	FSM	ENSMUSG00000022948.17	ENSMUST00000233517.2	467	4	-52	-148	-30	0	multi-exon	FALSE	canonical	1	2	junction_3	64.6374504447692	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	-4	True	AATAAA	-18	NA	93383549	93380347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_93380573_93382066_93382191_93383124_93383206_93383312
ENSMUSG00000022956.12_91722109_91728472_1	chr16	-	728	7	FSM	ENSMUSG00000022956.12	ENSMUST00000023677.10	838	7	103	7	-33	0	multi-exon	FALSE	canonical	3	5653	junction_6	394.832348387684	30875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGGGCGTGAGGAGCCTT	914	False	NA	-8	True	AATAAA	-13	NA	91728472	91722108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725898_91727241_91727293_91728407
ENSMUSG00000022956.12_91722109_91728472_2	chr16	-	722	7	NNC	ENSMUSG00000022956.12	novel	838	7	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	2316.23864751071	20621	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGGGCGTGAGGAGCCTT	914	False	NA	-8	True	AATAAA	-13	NA	91728472	91722108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725898_91727247_91727293_91728407
ENSMUSG00000022961.19_91444767_91451629_1	chr16	+	404	3	ISM	ENSMUSG00000022961.19	ENSMUST00000114036.9	7945	5	-1	9292	0	-9292	5prime_fragment	FALSE	canonical	3	478	junction_2	6	8716	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAATATAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	91444766	91451629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_91444873_91448517_91448685_91451498
ENSMUSG00000022962.16_91430478_91443829_1	chr16	-	1686	11	FSM	ENSMUSG00000022962.16	ENSMUST00000120450.2	1865	11	-6	185	-6	-185	multi-exon	FALSE	canonical	3	1247	junction_10	242.657701299588	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTATCTTTGAAATTTT	NA	False	NA	0	True	AATAAA	-23	NA	91443829	91430477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
ENSMUSG00000022962.16_91437905_91443829_1	chr16	-	921	3	NIC	ENSMUSG00000022962.16	novel	1865	11	NA	NA	-6	138	intron_retention	FALSE	canonical	3	1247	junction_2	466.5	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGGGCTAGAGAGATGGCTA	NA	False	NA	NA	False	NA	NA	NA	91443829	91437904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_91438578_91439844_91440035_91443771
ENSMUSG00000022964.15_91372803_91394595_1	chr16	-	842	7	FSM	ENSMUSG00000022964.15	ENSMUST00000023686.15	2347	7	93	1412	-43	-157	multi-exon	FALSE	canonical	3	77	junction_3	6.43989302878722	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGAAGTCAGGTTTTTAC	NA	False	NA	NA	False	AATATA	-18	NA	91394595	91372802	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91373047_91374861_91374920_91377089_91377183_91378582_91378651_91380163_91380277_91383829_91383970_91394469
ENSMUSG00000022967.14_91289537_91293267_1	chr16	+	1078	3	NNC	ENSMUSG00000022967.14	novel	543	5	NA	NA	0	205	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCACGTGACTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	91289536	91293267	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_91290172_91291858_91292210_91293175
ENSMUSG00000022971.19_91169671_91190774_1	chr16	+	1012	7	FSM	ENSMUSG00000022971.19	ENSMUST00000117836.8	1099	7	-67	154	0	23	multi-exon	FALSE	canonical	3	47	junction_6	3.19722101554181	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCCTTCAGCCTGGCCAG	NA	False	NA	NA	False	AATAAA	-18	NA	91169670	91190774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91182829_91182954_91184831_91185005_91188608_91188767_91190644
ENSMUSG00000022971.19_91184930_91190928_1	chr16	+	511	3	NNC	ENSMUSG00000022971.19	novel	1099	7	NA	NA	253	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	27.5	813	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGGCTCTGTCTCTAAT	NA	False	NA	8	True	AATAAA	-20	NA	91184929	91190928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_91185005_91188608_91188767_91190650
ENSMUSG00000022971.19_91184930_91190928_2	chr16	+	517	3	ISM	ENSMUSG00000022971.19	ENSMUST00000117836.8	1099	7	15192	0	253	0	3prime_fragment	FALSE	canonical	3	47	junction_2	4	950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGGCTCTGTCTCTAAT	NA	False	NA	8	True	AATAAA	-20	NA	91184929	91190928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_91185005_91188608_91188767_91190644
ENSMUSG00000022972.11_90722697_90731714_1	chr16	-	1142	7	FSM	ENSMUSG00000022972.11	ENSMUST00000023694.11	1430	7	288	0	0	0	multi-exon	FALSE	canonical	3	724	junction_4	16.7994708911389	3021	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGTGTCATGAGAGC	NA	False	NA	2	True	NA	NA	NA	90731714	90722696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_90722971_90723232_90723329_90723985_90724118_90724237_90724397_90726803_90726872_90727881_90728050_90731469
ENSMUSG00000022972.11_90722697_90731815_1	chr16	-	1243	7	FSM	ENSMUSG00000022972.11	ENSMUST00000023694.11	1430	7	187	0	0	0	multi-exon	FALSE	canonical	3	724	junction_4	16.7994708911389	3053	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGTGTCATGAGAGC	NA	False	NA	2	True	NA	NA	NA	90731815	90722696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_90722971_90723232_90723329_90723985_90724118_90724237_90724397_90726803_90726872_90727881_90728050_90731469
ENSMUSG00000022982.11_90016571_90023217_1	chr16	+	528	5	NNC	ENSMUSG00000022982.11	novel	3970	3	NA	NA	-1071	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	310.281626107638	1135	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACTGTGTGACTCCTTTG	NA	False	NA	19	True	ATTAAA	-18	NA	90016570	90023217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_90016634_90019667_90019765_90021243_90021314_90022032_90022151_90023037
ENSMUSG00000022992.18_98416701_98432174_1	chr15	-	2124	10	NIC	ENSMUSG00000022992.18	novel	3596	10	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	1	77	junction_9	343.824388135198	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGTGTAAAGTGATCTG	NA	False	NA	-21	True	ATTAAA	-14	NA	98432174	98416700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98432121
ENSMUSG00000022999.16_98801798_98815979_1	chr15	-	2171	17	FSM	ENSMUSG00000022999.16	ENSMUST00000023736.10	2304	17	133	0	-43	0	multi-exon	FALSE	canonical	3	43	junction_9	10.4395581803063	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTGTCCCTGTGTCTAT	NA	False	NA	-3	True	AATAAA	-35	NA	98815979	98801797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98802390_98802545_98802708_98803796_98803864_98804124_98804216_98805417_98805492_98805774_98805853_98806400_98806478_98806556_98806641_98806729_98806803_98807083_98807149_98807268_98807338_98809376_98809504_98810024_98810129_98810278_98810419_98811437_98811472_98813017_98813103_98815730
ENSMUSG00000023004.9_98829306_98832319_1	chr15	-	1607	4	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5258.74321698847	40461	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTCTGGATACTTTGT	158	False	NA	NA	False	AGTAAA	-18	NA	98832319	98829305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_98830435_98830572_98830722_98830853_98831077_98832213
ENSMUSG00000023004.9_98829306_98832319_2	chr15	-	1592	4	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5258.74321698847	6863	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTCTGGATACTTTGT	158	False	NA	NA	False	AGTAAA	-18	NA	98832319	98829305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_98830420_98830572_98830722_98830853_98831077_98832213
ENSMUSG00000023004.9_98829306_98832319_3	chr15	-	1621	4	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5258.74321698847	56344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTCTGGATACTTTGT	158	False	NA	NA	False	AGTAAA	-18	NA	98832319	98829305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_98830428_98830551_98830722_98830853_98831077_98832213
ENSMUSG00000023004.9_98829306_98832319_4	chr15	-	1745	3	NIC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	5421	junction_1	3704.5	4598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTCTGGATACTTTGT	158	False	NA	NA	False	AGTAAA	-18	NA	98832319	98829305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_98830722_98830853_98831077_98832213
ENSMUSG00000023010.16_99290867_99306568_1	chr15	+	980	10	NNC	ENSMUSG00000023010.16	novel	1148	11	NA	NA	0	53	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	589.988888784262	1864	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTCGTGTCCTGGGTTCTT	NA	False	NA	26	True	AATATA	-13	NA	99290866	99306568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306361
ENSMUSG00000023010.16_99290867_99307930_2	chr15	+	509	4	NNC	ENSMUSG00000023010.16	novel	2452	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	884.712759412153	115	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGTCTCAGTGTTAAAT	NA	False	NA	15	True	AATAAA	-20	NA	99290866	99307930	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_99290922_99299460_99299545_99299941_99300051_99307669
ENSMUSG00000023020.4_99623528_99625999_1	chr15	+	676	2	FSM	ENSMUSG00000023020.4	ENSMUST00000023761.4	2090	2	0	1414	0	548	multi-exon	FALSE	canonical	3	1440	junction_1	0	8126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGTCTCTCTCTTTCTT	NA	False	NA	29	True	AGTAAA	-36	NA	99623527	99625999	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_99623730_99625525
ENSMUSG00000023020.4_99623528_99625999_2	chr15	+	674	2	NNC	ENSMUSG00000023020.4	novel	2090	2	NA	NA	0	548	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7517	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGTCTCTCTCTTTCTT	NA	False	NA	29	True	AGTAAA	-36	NA	99623527	99625999	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_99623730_99625527
ENSMUSG00000023020.4_99623558_99625929_1	chr15	+	574	2	NNC	ENSMUSG00000023020.4	novel	408	2	NA	NA	0	478	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2742	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTTAGTGGTTCTGTG	NA	False	NA	20	True	ATTAAA	-15	NA	99623557	99625929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_99623730_99625527
ENSMUSG00000023020.4_99623558_99625929_2	chr15	+	576	2	FSM	ENSMUSG00000023020.4	ENSMUST00000023761.4	2090	2	30	1484	0	478	multi-exon	FALSE	canonical	3	1440	junction_1	0	5585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTTAGTGGTTCTGTG	NA	False	NA	20	True	ATTAAA	-15	NA	99623557	99625929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_99623730_99625525
ENSMUSG00000023021.16_99633473_99670343_2	chr15	-	1957	10	FSM	ENSMUSG00000023021.16	ENSMUST00000023762.13	2096	10	139	0	0	0	multi-exon	FALSE	canonical	3	244	junction_2	16.8332416572494	1115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTCTTTAGTA	NA	False	NA	-3	True	ATTAAA	-15	NA	99670343	99633472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_99634318_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
ENSMUSG00000023021.16_99634047_99670343_1	chr15	-	1383	10	FSM	ENSMUSG00000023021.16	ENSMUST00000023762.13	2096	10	139	574	0	-574	multi-exon	FALSE	canonical	3	244	junction_2	16.8332416572494	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCCGTTTTGTATTTAA	NA	False	NA	NA	False	AAGAAA	-22	NA	99670343	99634046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_99634318_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
ENSMUSG00000023022.15_99717524_99773297_1	chr15	-	595	4	ISM	ENSMUSG00000023022.15	ENSMUST00000073691.5	4243	11	40	41173	0	152	5prime_fragment	FALSE	canonical	3	748	junction_1	147.582745152225	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAAACTGTCTGGGAGAT	7278	False	NA	NA	False	TTTAAA	-26	NA	99773297	99717523	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_99717840_99724672_99724719_99741555_99741705_99773213
ENSMUSG00000023022.15_99741126_99773297_1	chr15	-	663	2	FSM	ENSMUSG00000023022.15	ENSMUST00000171450.2	2680	2	0	2017	0	-2017	multi-exon	FALSE	canonical	3	1109	junction_1	0	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAAGAAAAGAAA	7278	False	NA	NA	False	NA	NA	NA	99773297	99741125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_99741705_99773213
ENSMUSG00000023025.17_99870717_99888270_1	chr15	+	613	5	ISM	ENSMUSG00000023025.17	ENSMUST00000229553.2	1420	6	-1	2103	0	-2103	5prime_fragment	FALSE	canonical	3	323	junction_1	130.062244713829	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGACTACAAATACAGATTT	NA	False	NA	NA	False	ATTAAA	-4	NA	99870716	99888270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_99870865_99882800_99882937_99883918_99884075_99885283_99885360_99888173
ENSMUSG00000023025.17_99870717_99895357_1	chr15	+	1239	10	ISM	ENSMUSG00000023025.17	ENSMUST00000230956.2	2192	15	0	13222	0	4982	5prime_fragment	FALSE	canonical	3	302	junction_1	109.838264937336	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTAAGATCAAAAAAACAATA	NA	False	NA	NA	False	AAAACA	-45	NA	99870716	99895357	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_99870865_99882797_99882937_99883918_99884075_99885283_99885360_99888173_99888311_99889605_99889710_99891203_99891315_99892544_99892599_99894347_99894558_99895253
ENSMUSG00000023027.14_100125752_100130894_1	chr15	+	493	2	ISM	ENSMUSG00000023027.14	ENSMUST00000163855.8	831	6	0	21435	0	0	5prime_fragment	FALSE	canonical	3	255	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGACTCTTTCTCCTAAA	NA	False	NA	NA	False	ACTAAA	-45	NA	100125751	100130894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_100125964_100130613
ENSMUSG00000023027.14_100125752_100158286_1	chr15	+	1432	8	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	0	282	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	110.684143362257	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGTTACTAAGTATGTAAAT	NA	False	NA	15	True	AATAAA	-23	NA	100125751	100158286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695_100158177_100158218
ENSMUSG00000023027.14_100125752_100159129_1	chr15	+	2275	8	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	110.684143362257	801	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTCGGAATGCAAAACAT	NA	False	NA	17	True	ATTAAA	-20	NA	100125751	100159129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695_100158177_100158218
ENSMUSG00000023031.9_100572303_100581067_1	chr15	-	804	5	NNC	ENSMUSG00000023031.9	novel	456	4	NA	NA	-67	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	13.4420050587701	222	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTGCTTGCATTTATAA	5887	False	NA	1	True	AATAAA	-19	NA	100581067	100572302	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_100572599_100573204_100573355_100579023_100579170_100580767_100580847_100580934
ENSMUSG00000023031.9_100572303_100581067_2	chr15	-	725	4	FSM	ENSMUSG00000023031.9	ENSMUST00000229235.2	456	4	-67	-202	-67	0	multi-exon	FALSE	canonical	3	11	junction_3	10.8730042868667	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTGCTTGCATTTATAA	5887	False	NA	1	True	AATAAA	-19	NA	100581067	100572302	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_100572599_100573204_100573355_100579023_100579170_100580934
ENSMUSG00000023039.18_101310283_101325672_1	chr15	+	1572	9	FSM	ENSMUSG00000023039.18	ENSMUST00000068904.9	4094	9	0	2522	0	2	multi-exon	FALSE	canonical	3	14	junction_1	16.0078105935821	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGCATCGGCTAGCTAG	NA	False	NA	8	True	AATAAA	-15	NA	101310282	101325672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_101310661_101311849_101312062_101314101_101314163_101316198_101316295_101317383_101317549_101318354_101318481_101321150_101321372_101324969_101325005_101325394
ENSMUSG00000023046.7_102054761_102057946_1	chr15	+	670	4	NNC	ENSMUSG00000023046.7	novel	1112	4	NA	NA	1964	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.471404520791032	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTCTCTGCGTCTGTCTCA	NA	False	NA	NA	False	AATAAA	-28	NA	102054760	102057946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_102054842_102056279_102056414_102056536_102056660_102057614
ENSMUSG00000023047.12_102355079_102363068_1	chr15	+	1474	8	ISM	ENSMUSG00000023047.12	ENSMUST00000023809.11	1938	11	1277	-3	1196	0	3prime_fragment	FALSE	canonical	2	5	junction_1	62.2893183754122	1014	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCATCAATGTGTTTTT	NA	False	NA	16	True	AATAAA	-16	NA	102355078	102363068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_102355215_102355434_102355548_102355665_102355897_102360583_102360699_102360821_102360995_102361179_102361328_102361466_102361604_102362647
ENSMUSG00000023047.12_102360594_102363068_1	chr15	+	984	5	ISM	ENSMUSG00000023047.12	ENSMUST00000023809.11	1938	11	6792	-3	0	0	3prime_fragment	FALSE	canonical	3	32	junction_1	46.916814683011	979	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCATCAATGTGTTTTT	NA	False	NA	16	True	AATAAA	-16	NA	102360593	102363068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_102360699_102360821_102360995_102361179_102361328_102361466_102361604_102362647
ENSMUSG00000023047.12_102360758_102363068_1	chr15	+	806	3	ISM	ENSMUSG00000023047.12	ENSMUST00000229278.2	1735	10	6887	0	0	0	3prime_fragment	FALSE	canonical	1	2	junction_2	65.5	177	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCATCAATGTGTTTTT	NA	False	NA	16	True	AATAAA	-16	NA	102360757	102363068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_102360995_102361179_102361328_102362647
ENSMUSG00000023047.12_102360758_102363068_2	chr15	+	658	2	ISM	ENSMUSG00000023047.12	ENSMUST00000162893.2	611	3	164	-88	0	0	3prime_fragment	FALSE	canonical	3	16	junction_1	0	154	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCATCAATGTGTTTTT	NA	False	NA	16	True	AATAAA	-16	NA	102360757	102363068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_102360995_102362647
ENSMUSG00000023047.12_102360879_102363068_2	chr15	+	537	2	ISM	ENSMUSG00000023047.12	ENSMUST00000162893.2	611	3	285	-88	121	0	3prime_fragment	FALSE	canonical	3	16	junction_1	0	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCATCAATGTGTTTTT	NA	False	NA	16	True	AATAAA	-16	NA	102360878	102363068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_102360995_102362647
ENSMUSG00000023050.10_102379220_102407324_1	chr15	-	1545	14	NNC	ENSMUSG00000023050.10	novel	5185	14	NA	NA	11811	26861	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3322	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGGGAAAAGGGGAGCGGG	NA	False	NA	NA	False	NA	NA	NA	102407324	102379219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_102379239_102381695_102381862_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000023050.10_102379220_102407324_2	chr15	-	1452	13	NNC	ENSMUSG00000023050.10	novel	5185	14	NA	NA	11811	26861	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2767	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGGGAAAAGGGGAGCGGG	NA	False	NA	NA	False	NA	NA	NA	102407324	102379219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_102379239_102381695_102381862_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000023050.10_102382580_102407324_1	chr15	-	1379	13	NIC	ENSMUSG00000023050.10	novel	5185	14	NA	NA	11811	23501	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3339	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTGCCAACTTCCTGCAA	NA	False	NA	NA	False	ACTAAA	-43	NA	102407324	102382579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398189_102398243_102399068_102399239_102406923
ENSMUSG00000023050.10_102383051_102407324_1	chr15	-	1259	10	NIC	ENSMUSG00000023050.10	novel	5185	14	NA	NA	11811	23030	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	1089	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGACAATTCCCTTCTGA	NA	False	NA	NA	False	NA	NA	NA	102407324	102383050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000023050.10_102383051_102407324_2	chr15	-	1151	9	NIC	ENSMUSG00000023050.10	novel	5185	14	NA	NA	11811	23030	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	1047	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGACAATTCCCTTCTGA	NA	False	NA	NA	False	NA	NA	NA	102407324	102383050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102398189_102398243_102399068_102399239_102406923
ENSMUSG00000023050.10_102383051_102407324_3	chr15	-	1188	10	NNC	ENSMUSG00000023050.10	novel	5185	14	NA	NA	11811	23030	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1529	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGACAATTCCCTTCTGA	NA	False	NA	NA	False	NA	NA	NA	102407324	102383050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399234_102406923
ENSMUSG00000023050.10_102383051_102407324_4	chr15	-	1184	9	NNC	ENSMUSG00000023050.10	novel	5185	14	NA	NA	11811	23030	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1070	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGACAATTCCCTTCTGA	NA	False	NA	NA	False	NA	NA	NA	102407324	102383050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396743_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000023051.12_102426627_102432111_1	chr15	+	1790	9	FSM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	-267	0	0	0	multi-exon	FALSE	canonical	3	312	junction_3	28.7706447616316	1580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102426626	102432111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUSG00000023051.12_102426890_102432111_1	chr15	+	1407	8	NIC	ENSMUSG00000023051.12	novel	1523	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_2	130.571741168741	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102426889	102432111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_102427038_102427556_102427727_102429572_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUSG00000023051.12_102426890_102432111_2	chr15	+	1510	9	FSM	ENSMUSG00000023051.12	ENSMUST00000154948.8	951	9	-102	-457	0	0	multi-exon	FALSE	canonical	3	32	junction_3	117.676463237132	1294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102426889	102432111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429572_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUSG00000023051.12_102426890_102432111_3	chr15	+	1357	8	NIC	ENSMUSG00000023051.12	novel	1523	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	30	junction_1	124.392072718088	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102426889	102432111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_102427038_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUSG00000023051.12_102426890_102432111_4	chr15	+	1424	8	NIC	ENSMUSG00000023051.12	novel	1523	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	125.715584408876	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102426889	102432111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_102427038_102427556_102427727_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUSG00000023051.12_102426890_102432111_5	chr15	+	1661	8	ISM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	-4	0	0	0	intron_retention	FALSE	canonical	3	312	junction_3	28	1293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102426889	102432111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
ENSMUSG00000023051.12_102427237_102432111_1	chr15	+	1699	8	ISM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	343	0	0	0	3prime_fragment	FALSE	canonical	3	312	junction_2	30.5647522750088	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102427236	102432111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUSG00000023067.15_29312743_29318565_1	chr17	+	782	3	FSM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	0	1131	0	14	multi-exon	FALSE	canonical	3	1159	junction_2	73.5	4186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCAAAACAAAACAAACCTAA	4647	False	NA	94	True	AAAAAG	-22	NA	29312742	29318565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29312836_29317370_29317812_29318317
ENSMUSG00000023067.15_29312743_29318675_1	chr17	+	892	3	FSM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	0	1021	0	0	multi-exon	FALSE	canonical	3	1159	junction_2	73.5	4254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATACCGGAGGAACAGTC	4647	False	NA	NA	False	NA	NA	NA	29312742	29318675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29312836_29317370_29317812_29318317
ENSMUSG00000023068.17_52293643_52312862_1	chr10	+	612	5	NNC	ENSMUSG00000023068.17	novel	4605	5	NA	NA	0	3394	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	165.410663199202	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCATATTCCTCATAATTT	NA	False	NA	9	True	TATAAA	-17	NA	52293642	52312862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_52293689_52305288_52305415_52306162_52306313_52309440_52309541_52312672
ENSMUSG00000023068.17_52293643_52314105_1	chr10	+	1855	5	NNC	ENSMUSG00000023068.17	novel	4605	5	NA	NA	0	-2174	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	165.410663199202	166	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGTCCAGTCACATTAC	NA	False	NA	14	True	AATAAA	-15	NA	52293642	52314105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_52293689_52305288_52305415_52306162_52306313_52309440_52309541_52312672
ENSMUSG00000023068.17_52294148_52314105_1	chr10	+	1926	5	FSM	ENSMUSG00000023068.17	ENSMUST00000023830.16	4605	5	505	2174	505	-2174	multi-exon	FALSE	canonical	3	398	junction_2	27.0370116691915	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGTCCAGTCACATTAC	NA	False	NA	14	True	AATAAA	-15	NA	52294147	52314105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_52294265_52305288_52305415_52306162_52306313_52309440_52309541_52312672
ENSMUSG00000023072.15_35096480_35129878_1	chr7	+	2527	17	ISM	ENSMUSG00000023072.15	ENSMUST00000141704.8	2825	20	20	8234	0	-2121	5prime_fragment	FALSE	canonical	2	50	junction_16	33.5018073206506	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGATATTGTCTGTACTCA	NA	False	NA	11	True	AATAAA	-17	NA	35096479	35129878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122829_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35129339
ENSMUSG00000023072.15_35131498_35138114_1	chr7	+	824	4	NNC	ENSMUSG00000023072.15	novel	2825	20	NA	NA	3751	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	58.6590904198905	197	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGCATGTTTATTTCAG	NA	False	NA	10	True	AATAAA	-20	NA	35131497	35138114	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_35131700_35131942_35132033_35134898_35135069_35137752
ENSMUSG00000023072.15_35134912_35138114_1	chr7	+	519	2	ISM	ENSMUSG00000023072.15	ENSMUST00000150421.2	712	4	7165	-8	7165	0	3prime_fragment	FALSE	canonical	3	122	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGCATGTTTATTTCAG	NA	False	NA	10	True	AATAAA	-20	NA	35134911	35138114	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_35135069_35137752
ENSMUSG00000023074.12_52433475_52459379_1	chrX	-	2186	6	FSM	ENSMUSG00000023074.12	ENSMUST00000023836.4	1763	6	0	-423	0	0	multi-exon	FALSE	canonical	0	0	junction_2	37.7804182083788	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGTTCTCTCTCCGTTC	NA	False	NA	-4	True	CATAAA	-18	NA	52459379	52433474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_52434867_52436580_52436743_52444529_52444751_52446286_52446363_52446450_52446705_52459298
ENSMUSG00000023089.13_24518665_24527318_1	chr6	-	382	4	NNC	ENSMUSG00000023089.13	novel	875	5	NA	NA	207	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1685.07019306483	1478	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTCCATGTTATTG	711	False	NA	-31	True	ATTAAA	-27	NA	24527318	24518664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_24518824_24519190_24519250_24522657_24522775_24527271
ENSMUSG00000023089.13_24518665_24527569_1	chr6	-	438	5	NNC	ENSMUSG00000023089.13	novel	875	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1549.74199465588	26354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTCCATGTTATTG	-4	True	NA	-31	True	ATTAAA	-27	NA	24527569	24518664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_24518824_24519190_24519257_24522657_24522775_24527271_24527317_24527518
ENSMUSG00000023089.13_24518665_24527569_2	chr6	-	437	5	NNC	ENSMUSG00000023089.13	novel	875	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1462.32631447294	22558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTCCATGTTATTG	-4	True	NA	-31	True	ATTAAA	-27	NA	24527569	24518664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_24518824_24519190_24519250_24522645_24522775_24527271_24527317_24527524
ENSMUSG00000023089.13_24518665_24527569_3	chr6	-	422	5	NNC	ENSMUSG00000023089.13	novel	875	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1483.04119548312	21784	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTCCATGTTATTG	-4	True	NA	-31	True	ATTAAA	-27	NA	24527569	24518664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_24518814_24519190_24519257_24522657_24522775_24527271_24527317_24527524
ENSMUSG00000023094.15_19376479_19384693_1	chr2	+	377	3	NNC	ENSMUSG00000023094.15	novel	326	3	NA	NA	0	-3402	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	68	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCTGTGCCGTATCCTT	4816	False	NA	NA	False	AATAAA	-21	NA	19376478	19384693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_19376591_19382972_19383074_19384529
ENSMUSG00000023104.10_134611611_134626909_1	chr5	+	1178	11	FSM	ENSMUSG00000023104.10	ENSMUST00000023867.8	4995	11	67	3750	0	100	multi-exon	FALSE	canonical	3	1115	junction_7	96.2091991443646	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTCTCTTGTACCCCAGGC	NA	False	NA	31	True	NA	NA	NA	134611610	134626909	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
ENSMUSG00000023104.10_134611611_134627182_1	chr5	+	1451	11	FSM	ENSMUSG00000023104.10	ENSMUST00000023867.8	4995	11	67	3477	0	0	multi-exon	FALSE	canonical	3	1115	junction_7	96.2091991443646	2802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGCTATGCTTAATTGC	NA	False	NA	19	True	GATAAA	-15	NA	134611610	134627182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
ENSMUSG00000023106.16_124045238_124065655_1	chr5	+	1098	7	NNC	ENSMUSG00000023106.16	novel	2339	8	NA	NA	0	459	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	572.327630528762	6872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTTTTTTTTTCTCTT	8978	False	NA	11	True	AATAAA	-20	NA	124045237	124065655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_124045430_124046162_124046278_124055240_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
ENSMUSG00000023106.16_124045345_124065485_1	chr5	+	821	7	NNC	ENSMUSG00000023106.16	novel	2339	8	NA	NA	0	289	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	572.327630528762	871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTCGGCGTCCTCACTGT	9085	False	NA	8	True	AGTAAA	-15	NA	124045344	124065485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_124045430_124046162_124046278_124055240_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
ENSMUSG00000023106.16_124045345_124065485_2	chr5	+	799	7	NIC	ENSMUSG00000023106.16	novel	2339	8	NA	NA	0	289	combination_of_known_splicesites	FALSE	canonical	3	116	junction_2	529.179684879237	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTCGGCGTCCTCACTGT	9085	False	NA	8	True	AGTAAA	-15	NA	124045344	124065485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_124045430_124046162_124046278_124055262_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
ENSMUSG00000023106.16_124045345_124065655_1	chr5	+	969	7	NIC	ENSMUSG00000023106.16	novel	2339	8	NA	NA	0	459	combination_of_known_splicesites	FALSE	canonical	3	116	junction_2	529.179684879237	1271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTTTTTTTTTCTCTT	9085	False	NA	11	True	AATAAA	-20	NA	124045344	124065655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_124045430_124046162_124046278_124055262_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
ENSMUSG00000023106.16_124045345_124065655_2	chr5	+	985	7	NNC	ENSMUSG00000023106.16	novel	2339	8	NA	NA	0	459	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	572.327630528762	2621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTTTTTTTTTCTCTT	9085	False	NA	11	True	AATAAA	-20	NA	124045344	124065655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_124045430_124046162_124046272_124055240_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
ENSMUSG00000023106.16_124045345_124065655_4	chr5	+	989	8	FSM	ENSMUSG00000023106.16	ENSMUST00000023869.15	2339	8	107	1243	0	459	multi-exon	FALSE	canonical	3	1477	junction_4	100.760982082372	7756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTTTTTTTTTCTCTT	9085	False	NA	11	True	AATAAA	-20	NA	124045344	124065655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124045430_124046162_124046278_124053253_124053274_124055262_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
ENSMUSG00000023147.18_95946607_95954525_1	chr16	+	693	3	ISM	ENSMUSG00000023147.18	ENSMUST00000233227.2	1101	4	0	1450	0	-858	5prime_fragment	FALSE	canonical	3	306	junction_2	22	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATTGCCTTTCTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	95946606	95954525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_95946779_95953012_95953179_95954170
ENSMUSG00000023147.18_95946607_95957217_1	chr16	+	660	5	FSM	ENSMUSG00000023147.18	ENSMUST00000023913.11	2495	5	0	1835	0	60	multi-exon	FALSE	canonical	3	306	junction_2	29.2350389088163	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCACAGATTCTTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	95946606	95957217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_95946779_95953012_95953179_95954170_95954239_95955280_95955396_95957078
ENSMUSG00000023147.18_95946607_95957702_1	chr16	+	1145	5	FSM	ENSMUSG00000023147.18	ENSMUST00000023913.11	2495	5	0	1350	0	545	multi-exon	FALSE	canonical	3	306	junction_2	29.2350389088163	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTCTTTAAAGCATTGG	NA	False	NA	NA	False	AATGAA	-1	NA	95946606	95957702	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_95946779_95953012_95953179_95954170_95954239_95955280_95955396_95957078
ENSMUSG00000023150.15_151220269_151239394_1	chr1	+	2691	15	FSM	ENSMUSG00000023150.15	ENSMUST00000023918.13	3511	15	41	779	0	278	multi-exon	FALSE	canonical	3	1145	junction_2	98.7764172879585	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAAGAAGTCCCTGCTCC	NA	False	NA	16	True	AATAAA	-24	NA	151220268	151239394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
ENSMUSG00000023150.15_151220269_151240010_1	chr1	+	3307	15	FSM	ENSMUSG00000023150.15	ENSMUST00000023918.13	3511	15	41	163	0	-156	multi-exon	FALSE	canonical	3	1145	junction_2	98.7764172879585	1512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTTTTCAGAAGTGTTTT	NA	False	NA	13	True	ATTAAA	-23	NA	151220268	151240010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
ENSMUSG00000023150.15_151236695_151240010_1	chr1	+	1569	4	ISM	ENSMUSG00000023150.15	ENSMUST00000097543.8	3337	14	16426	156	-303	-156	3prime_fragment	FALSE	canonical	3	1382	junction_2	23.7627158941622	1335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTTTTCAGAAGTGTTTT	NA	False	NA	13	True	ATTAAA	-23	NA	151236694	151240010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_151236810_151236893_151237026_151237212_151237387_151238862
ENSMUSG00000023156.5_14379219_14389250_1	chr14	-	1180	6	NNC	ENSMUSG00000023156.5	novel	2401	6	NA	NA	156	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	87.8621647809795	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATACAAATTTAAAGTTATA	NA	False	NA	-30	True	NA	NA	NA	14389250	14379218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_14379866_14380975_14381055_14382232_14382310_14385771_14385857_14385978_14386066_14389045
ENSMUSG00000023156.5_14379219_14389406_1	chr14	-	1027	6	NNC	ENSMUSG00000023156.5	novel	2401	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	89.6883492991146	247	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATACAAATTTAAAGTTATA	NA	False	NA	-30	True	NA	NA	NA	14389406	14379218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_14379772_14380975_14381055_14382232_14382310_14385771_14385857_14385978_14386066_14389260
ENSMUSG00000023156.5_14381698_14389406_1	chr14	-	930	4	ISM	ENSMUSG00000023156.5	ENSMUST00000023924.4	2401	6	0	3759	0	-2479	5prime_fragment	FALSE	canonical	3	219	junction_2	5.09901951359278	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATTGGTTCCTGATTGA	NA	False	NA	NA	False	NA	NA	NA	14389406	14381697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_14382310_14385771_14385857_14385978_14386066_14389260
ENSMUSG00000023156.5_14382008_14389406_1	chr14	-	620	4	ISM	ENSMUSG00000023156.5	ENSMUST00000023924.4	2401	6	0	4069	0	-2789	5prime_fragment	FALSE	canonical	3	219	junction_2	5.09901951359278	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGTTTCCAGGTAATCC	NA	False	NA	NA	False	NA	NA	NA	14389406	14382007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_14382310_14385771_14385857_14385978_14386066_14389260
ENSMUSG00000023169.16_96473868_96540280_1	chr15	-	2546	16	FSM	ENSMUSG00000023169.16	ENSMUST00000088454.13	6966	16	-149	4569	0	0	multi-exon	FALSE	canonical	3	214	junction_15	70.2442089348929	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGGTTTGTTTCCCTC	NA	False	NA	-3	True	ATTAAA	-24	NA	96540280	96473867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540008
ENSMUSG00000023169.16_96474126_96540175_1	chr15	-	2183	16	FSM	ENSMUSG00000023169.16	ENSMUST00000088454.13	6966	16	-44	4827	-44	-258	multi-exon	FALSE	canonical	3	214	junction_15	70.2442089348929	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTTCATAAATAATTTGCC	NA	False	NA	NA	False	NA	NA	NA	96540175	96474125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540008
ENSMUSG00000023175.16_79540342_79547657_1	chr10	+	1098	7	FSM	ENSMUSG00000023175.16	ENSMUST00000179781.8	1261	7	17	146	0	0	multi-exon	FALSE	canonical	3	6175	junction_5	429.072416835304	5118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAAGTGTTGTCACTAC	NA	False	NA	80	True	NA	NA	NA	79540341	79547657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547089_79547115_79547327
ENSMUSG00000023175.16_79540342_79547803_1	chr10	+	1233	6	NNC	ENSMUSG00000023175.16	novel	1261	7	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_5	2689.50535229064	17991	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTCACTACTTGAA	NA	False	NA	21	True	AATAAA	-15	NA	79540341	79547803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546769_79547327
ENSMUSG00000023175.16_79540342_79547803_2	chr10	+	1239	6	NNC	ENSMUSG00000023175.16	novel	1261	7	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_5	2689.50535229064	33641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTCACTACTTGAA	NA	False	NA	21	True	AATAAA	-15	NA	79540341	79547803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546775_79547327
ENSMUSG00000023175.16_79546510_79547803_1	chr10	+	735	2	NNC	ENSMUSG00000023175.16	novel	1240	6	NA	NA	571	0	intron_retention	FALSE	canonical	0	0	junction_1	0	2116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTCACTACTTGAA	NA	False	NA	21	True	AATAAA	-15	NA	79546509	79547803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79546769_79547327
ENSMUSG00000023175.16_79546510_79547803_2	chr10	+	741	2	NNC	ENSMUSG00000023175.16	novel	1240	6	NA	NA	571	0	intron_retention	FALSE	canonical	0	0	junction_1	0	17274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTCACTACTTGAA	NA	False	NA	21	True	AATAAA	-15	NA	79546509	79547803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79546775_79547327
ENSMUSG00000023235.15_4375210_4384812_1	chr8	+	728	4	NNC	ENSMUSG00000023235.15	novel	362	3	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5.79271573232759	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGATGTTTGTGTAAG	NA	False	NA	NA	False	NA	NA	NA	4375209	4384812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_4375412_4377756_4377894_4383122_4383231_4384531
ENSMUSG00000023235.15_4375210_4384812_2	chr8	+	605	4	NNC	ENSMUSG00000023235.15	novel	362	3	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_2	5.79271573232759	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGATGTTTGTGTAAG	NA	False	NA	NA	False	NA	NA	NA	4375209	4384812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_4375289_4377756_4377894_4383122_4383231_4384531
ENSMUSG00000023235.15_4375210_4384812_3	chr8	+	562	4	NNC	ENSMUSG00000023235.15	novel	362	3	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	4.49691252107735	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGATGTTTGTGTAAG	NA	False	NA	NA	False	NA	NA	NA	4375209	4384812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_4375289_4377756_4377851_4383122_4383231_4384531
ENSMUSG00000023235.15_4375210_4410007_1	chr8	+	1150	7	NIC	ENSMUSG00000023235.15	novel	867	8	NA	NA	0	9	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	6.71854812358213	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATGACTGACAGTGATGT	NA	False	NA	NA	False	AATAAA	-22	NA	4375209	4410007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_4375289_4377756_4377851_4399771_4399895_4403882_4404001_4404090_4404204_4407592_4407690_4409481
ENSMUSG00000023249.16_106352187_106362615_1	chr9	-	1582	15	NNC	ENSMUSG00000023249.16	novel	2962	11	NA	NA	-8467	-329	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1539	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCCCTCCCCCCCTTGGGC	NA	False	NA	NA	False	NA	NA	NA	106362615	106352186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_106352357_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
ENSMUSG00000023262.14_106310189_106315387_1	chr9	-	1390	15	NNC	ENSMUSG00000023262.14	novel	1529	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	139.5177737196	774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCTTAATACTGTGGACA	NA	False	NA	-16	True	AATAAA	-18	NA	106315387	106310188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312899_106312976_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314937_106315331
ENSMUSG00000023262.14_106310189_106315387_2	chr9	-	1389	15	FSM	ENSMUSG00000023262.14	ENSMUST00000024031.13	1529	15	131	9	0	0	multi-exon	FALSE	canonical	3	198	junction_14	78.143510052117	1499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCTTAATACTGTGGACA	NA	False	NA	-16	True	AATAAA	-18	NA	106315387	106310188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314937_106315331
ENSMUSG00000023262.14_106310189_106315438_1	chr9	-	1431	15	NNC	ENSMUSG00000023262.14	novel	1529	15	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	131.306873003507	1368	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCTTAATACTGTGGACA	NA	False	NA	-16	True	AATAAA	-18	NA	106315438	106310188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312899_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314933_106315331
ENSMUSG00000023262.14_106310189_106315438_2	chr9	-	1455	15	NNC	ENSMUSG00000023262.14	novel	1529	15	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	129.549691041622	1404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCTTAATACTGTGGACA	NA	False	NA	-16	True	AATAAA	-18	NA	106315438	106310188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_106310464_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314933_106315331
ENSMUSG00000023272.5_88703849_88710886_1	chr15	+	1355	10	NNC	ENSMUSG00000023272.5	novel	1366	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	339.038655431122	2408	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGACGTGTTGGTTTGTTT	NA	False	NA	17	True	AATAAA	-26	NA	88703848	88710886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_88704038_88704133_88704217_88704731_88704843_88705337_88705430_88706161_88706339_88707269_88707366_88707944_88708029_88708850_88708947_88709352_88709494_88710600
ENSMUSG00000023272.5_88706224_88710886_1	chr15	+	829	6	ISM	ENSMUSG00000023272.5	ENSMUST00000024042.5	1366	10	2375	0	2375	0	3prime_fragment	FALSE	canonical	3	956	junction_5	103.114305506074	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGACGTGTTGGTTTGTTT	NA	False	NA	17	True	AATAAA	-26	NA	88706223	88710886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_88706339_88707269_88707366_88707944_88708029_88708850_88708947_88709352_88709494_88710589
ENSMUSG00000023277.14_106080336_106092588_1	chr9	+	1222	8	NNC	ENSMUSG00000023277.14	novel	1596	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	123.55070016072	228	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGAGCCTGGGTGCCTTT	NA	False	NA	19	True	AATAAA	-16	NA	106080335	106092588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_106080484_106084087_106084166_106088917_106089097_106089454_106089551_106089930_106090036_106090136_106090263_106091299_106091354_106092152
ENSMUSG00000023284.16_110258149_110277660_1	chr5	+	2967	5	FSM	ENSMUSG00000023284.16	ENSMUST00000112528.8	3158	5	191	0	-53	0	multi-exon	FALSE	canonical	3	28	junction_1	12.7744862910412	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTATTTGTGAAGATGT	2140	False	NA	NA	False	NA	NA	NA	110258148	110277660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_110258184_110259762_110259933_110271625_110271747_110272218_110272312_110275112
ENSMUSG00000023307.15_37185125_37199221_1	chr19	+	1297	6	FSM	ENSMUSG00000023307.15	ENSMUST00000024078.15	1809	6	183	329	150	-155	multi-exon	FALSE	canonical	3	653	junction_3	49.1747902893342	1952	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGACGCCTCTTTTGTAT	NA	False	NA	22	True	ATTAAA	-16	NA	37185124	37199221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_37185304_37188069_37188273_37194581_37194713_37197701_37197886_37198037_37198205_37198788
ENSMUSG00000023307.15_37185125_37199396_1	chr19	+	1472	6	FSM	ENSMUSG00000023307.15	ENSMUST00000024078.15	1809	6	183	154	150	20	multi-exon	FALSE	canonical	3	653	junction_3	49.1747902893342	2520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCAGCATTGAAGTGATTA	NA	False	NA	13	True	AATAAA	-20	NA	37185124	37199396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_37185304_37188069_37188273_37194581_37194713_37197701_37197886_37198037_37198205_37198788
ENSMUSG00000023307.15_37185125_37199550_1	chr19	+	1626	6	FSM	ENSMUSG00000023307.15	ENSMUST00000024078.15	1809	6	183	0	150	0	multi-exon	FALSE	canonical	3	653	junction_3	49.1747902893342	2973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTGTACTTTTGACTCG	NA	False	NA	25	True	ATTAAA	-33	NA	37185124	37199550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_37185304_37188069_37188273_37194581_37194713_37197701_37197886_37198037_37198205_37198788
ENSMUSG00000023307.15_37188238_37198475_1	chr19	+	788	4	ISM	ENSMUSG00000023307.15	ENSMUST00000112391.8	1293	5	3271	0	3263	0	3prime_fragment	FALSE	canonical	3	653	junction_2	62.9444199274249	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATACTGTTTCCTGTCATC	NA	False	NA	12	True	AATAAA	-20	NA	37188237	37198475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_37188273_37194581_37194713_37197701_37197886_37198037
ENSMUSG00000023330.13_125994061_126007197_2	chr2	+	1706	5	NNC	ENSMUSG00000023330.13	novel	1342	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	62.1867148191637	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCGCCCTTACCTTTCGA	7279	False	NA	26	True	ATTAAA	-24	NA	125994060	126007197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_125994498_125996465_125996781_126000329_126000474_126001689_126001949_126006646
ENSMUSG00000023330.13_125994061_126007197_3	chr2	+	1199	4	NIC	ENSMUSG00000023330.13	novel	1342	5	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	21	junction_2	74.5534856477028	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCGCCCTTACCTTTCGA	7279	False	NA	26	True	ATTAAA	-24	NA	125994060	126007197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_125994135_125996465_125996781_126001689_126001949_126006646
ENSMUSG00000023345.18_106158579_106227076_1	chr9	+	1374	11	FSM	ENSMUSG00000023345.18	ENSMUST00000072206.14	2337	11	319	644	0	0	multi-exon	FALSE	canonical	3	282	junction_9	19.0265603827912	919	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCCACATCTTACCCAG	9876	False	NA	7	True	AATAAA	-19	NA	106158578	106227076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106158656_106160050_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106207071_106207216_106226880
ENSMUSG00000023345.18_106158579_106227721_1	chr9	+	2019	11	FSM	ENSMUSG00000023345.18	ENSMUST00000072206.14	2337	11	319	-1	0	1	multi-exon	FALSE	canonical	3	282	junction_9	19.0265603827912	1006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGCTTTGCCTGATCTTG	9876	False	NA	23	True	AGTAAA	-17	NA	106158578	106227721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106158656_106160050_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106207071_106207216_106226880
ENSMUSG00000023348.12_137308160_137312500_1	chr5	-	1749	9	NNC	ENSMUSG00000023348.12	novel	2168	9	NA	NA	-31	-244	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	42.6085012057453	488	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCAAGTCTGTTCTTTAT	1693	False	NA	-1	True	TTTAAA	-5	NA	137312500	137308159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_137308437_137308546_137308668_137308914_137309094_137310135_137310306_137310401_137310496_137310967_137311343_137311612_137311739_137311842_137311971_137312221
ENSMUSG00000023367.15_48810759_48818051_1	chr6	+	1147	7	NIC	ENSMUSG00000023367.15	novel	308	3	NA	NA	-7094	-1213	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTTGCCAGCAAGTAGC	NA	False	NA	NA	False	NA	NA	NA	48810758	48818051	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_48811074_48811440_48811561_48812378_48812610_48812839_48812897_48813160_48813272_48815105_48815297_48817929
ENSMUSG00000023403.15_49372538_49400668_1	chr6	+	989	8	NIC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	0	-45618	combination_of_known_splicesites	FALSE	canonical	2	62	junction_6	82.8418705136725	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGTTGTTTTTTACTTT	173	False	NA	NA	False	AATAAA	-18	NA	49372537	49400668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49398617_49398734_49400309
ENSMUSG00000023403.15_49372538_49446435_1	chr6	+	2427	20	NIC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	2	62	junction_6	54.5748107857386	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	173	False	NA	NA	False	AATAAA	-22	NA	49372537	49446435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
ENSMUSG00000023403.15_49434606_49446435_1	chr6	+	550	3	ISM	ENSMUSG00000023403.15	ENSMUST00000024171.14	3237	24	62068	0	19108	0	3prime_fragment	FALSE	canonical	3	204	junction_1	12.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	NA	False	NA	NA	False	AATAAA	-22	NA	49434605	49446435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_49434713_49442402_49442472_49446061
ENSMUSG00000023452.20_32893649_32942970_1	chr5	-	2138	9	NNC	ENSMUSG00000023452.20	novel	2183	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	245.173917862402	976	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACCGTAGCTTTGTATTT	NA	False	NA	NA	False	ATTAAA	-15	NA	32942970	32893648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_32894513_32894533_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
ENSMUSG00000023452.20_32893649_32942970_2	chr5	-	2137	9	NNC	ENSMUSG00000023452.20	novel	2183	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	245.173917862402	1156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACCGTAGCTTTGTATTT	NA	False	NA	NA	False	ATTAAA	-15	NA	32942970	32893648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_32894516_32894537_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
ENSMUSG00000023452.20_32894105_32942970_1	chr5	-	1703	8	FSM	ENSMUSG00000023452.20	ENSMUST00000061895.16	2183	8	20	460	0	-337	multi-exon	FALSE	canonical	3	685	junction_2	53.5235976948867	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTATCCTGGGCTCTGC	NA	False	NA	2	True	AGTAAA	-21	NA	32942970	32894104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
ENSMUSG00000023452.20_32894105_32942970_2	chr5	-	1681	9	NNC	ENSMUSG00000023452.20	novel	2183	8	NA	NA	0	-337	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	245.173917862402	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTATCCTGGGCTCTGC	NA	False	NA	2	True	AGTAAA	-21	NA	32942970	32894104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_32894516_32894537_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
ENSMUSG00000023456.17_124787555_124791121_1	chr6	-	1463	7	FSM	ENSMUSG00000023456.17	ENSMUST00000239432.2	1601	7	138	0	0	0	multi-exon	FALSE	canonical	3	1828	junction_3	39.1652482012647	17656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAACCTCTTTGTCCCAG	NA	False	NA	-23	True	AATACA	-16	NA	124791121	124787554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
ENSMUSG00000023456.17_124787678_124790893_1	chr6	-	1282	7	NNC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	224	-123	at_least_one_novel_splicesite	FALSE	canonical	2	53	junction_6	679.521645473245	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGGGTTGTCATAAT	NA	False	NA	-7	True	AATAAA	-14	NA	124790893	124787677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790800
ENSMUSG00000023456.17_124787678_124791121_1	chr6	-	1351	7	NNC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	0	-123	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	699.242546537958	13496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGGGTTGTCATAAT	NA	False	NA	-7	True	AATAAA	-14	NA	124791121	124787677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790959
ENSMUSG00000023456.17_124787678_124791121_2	chr6	-	1330	7	NNC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	0	-123	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_3	697.004224441207	3103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGGGTTGTCATAAT	NA	False	NA	-7	True	AATAAA	-14	NA	124791121	124787677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_124788351_124788479_124788568_124788844_124788931_124789376_124789500_124789583_124789669_124789752_124789877_124790970
ENSMUSG00000023456.17_124787678_124791121_3	chr6	-	1322	7	NNC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	0	-123	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	697.240911657433	2382	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGGGTTGTCATAAT	NA	False	NA	-7	True	AATAAA	-14	NA	124791121	124787677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_124788351_124788479_124788550_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
ENSMUSG00000023456.17_124787678_124791121_4	chr6	-	1317	7	NNC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	0	-123	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	699.931048191336	2718	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGGGTTGTCATAAT	NA	False	NA	-7	True	AATAAA	-14	NA	124791121	124787677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789646_124789752_124789877_124790970
ENSMUSG00000023456.17_124787678_124791121_5	chr6	-	1324	7	NNC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	0	-123	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	699.242546537958	3604	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGGGTTGTCATAAT	NA	False	NA	-7	True	AATAAA	-14	NA	124791121	124787677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790986
ENSMUSG00000023456.17_124787678_124791121_6	chr6	-	1334	7	NNC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	0	-123	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	697.240911657433	10100	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGGGTTGTCATAAT	NA	False	NA	-7	True	AATAAA	-14	NA	124791121	124787677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_124788351_124788479_124788562_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
ENSMUSG00000023456.17_124788007_124791121_1	chr6	-	1011	7	FSM	ENSMUSG00000023456.17	ENSMUST00000239432.2	1601	7	138	452	0	215	multi-exon	FALSE	canonical	3	1828	junction_3	39.1652482012647	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGTGAGGGGAGGGAGTA	NA	False	NA	NA	False	NA	NA	NA	124791121	124788006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
ENSMUSG00000023467.19_45124589_45138229_1	chr7	+	1145	7	NIC	ENSMUSG00000023467.19	novel	536	5	NA	NA	-6712	-27442	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCGCGCTGCAAGCC	NA	False	NA	NA	False	NA	NA	NA	45124588	45138229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_45124800_45125028_45125177_45128432_45128558_45131212_45131466_45136164_45136329_45137483_45137596_45138097
ENSMUSG00000023467.19_45165941_45171806_1	chr7	+	1317	8	ISM	ENSMUSG00000023467.19	ENSMUST00000085331.14	1525	10	1915	0	709	0	3prime_fragment	FALSE	canonical	3	20	junction_3	22.1423963085686	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTTCTGTGCGTTTGGA	1993	False	NA	17	True	AATAAA	-18	NA	45165940	45171806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_45166111_45167203_45167392_45168009_45168310_45169154_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
ENSMUSG00000023467.19_45169038_45171806_1	chr7	+	776	5	ISM	ENSMUSG00000023467.19	ENSMUST00000085331.14	1525	10	5012	0	3806	0	3prime_fragment	FALSE	canonical	3	69	junction_2	4.38748219369606	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTTCTGTGCGTTTGGA	5090	False	NA	17	True	AATAAA	-18	NA	45169037	45171806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
ENSMUSG00000023467.19_45169038_45171806_2	chr7	+	677	4	NIC	ENSMUSG00000023467.19	novel	1597	10	NA	NA	3806	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	36.1201698039567	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTTCTGTGCGTTTGGA	5090	False	NA	17	True	AATAAA	-18	NA	45169037	45171806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_45169268_45170163_45170279_45171267_45171440_45171646
ENSMUSG00000023467.19_45169038_45172018_1	chr7	+	897	6	ISM	ENSMUSG00000023467.19	ENSMUST00000107762.10	1883	14	5908	0	3806	0	3prime_fragment	FALSE	canonical	2	2	junction_5	28.8679753360017	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTTTAGTTAGTGTACA	5090	False	NA	NA	False	NA	NA	NA	45169037	45172018	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646_45171773_45171863
ENSMUSG00000023467.19_45169038_45172018_2	chr7	+	988	5	ISM	ENSMUSG00000023467.19	ENSMUST00000085331.14	1525	10	5012	-212	3806	0	3prime_fragment	FALSE	canonical	3	69	junction_2	4.38748219369606	708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTTTAGTTAGTGTACA	5090	False	NA	NA	False	NA	NA	NA	45169037	45172018	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
ENSMUSG00000023495.14_106331041_106341211_1	chr9	+	1838	13	NIC	ENSMUSG00000023495.14	novel	2035	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_12	99.8749217771909	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGCAGTAATACTAGTG	1600	False	NA	27	True	AATAAA	-20	NA	106331040	106341211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_106331207_106337203_106337349_106337474_106337499_106337595_106337629_106337849_106337967_106338191_106338324_106338463_106338593_106339047_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706_106339877_106340526
ENSMUSG00000023505.14_124807180_124810241_1	chr6	+	1011	6	NNC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	0	-254	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	438.832359791299	147	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1344	False	NA	29	True	ATTAAA	-16	NA	124807179	124810241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124807237_124807482_124807614_124808324_124808456_124809108_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_124807180_124810241_10	chr6	+	830	6	NNC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	0	-254	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	347.474660946665	106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1344	False	NA	29	True	ATTAAA	-16	NA	124807179	124810241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124807237_124807465_124807614_124808324_124808452_124809302_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_124807180_124810241_2	chr6	+	1022	6	NNC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	0	-254	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	403.938114071945	423	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1344	False	NA	29	True	ATTAAA	-16	NA	124807179	124810241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124807237_124807465_124807614_124808330_124808456_124809108_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_124807180_124810241_3	chr6	+	1016	6	NNC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	0	-254	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	347.474660946665	625	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1344	False	NA	29	True	ATTAAA	-16	NA	124807179	124810241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124807237_124807465_124807614_124808324_124808452_124809116_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_124807180_124810241_4	chr6	+	1016	6	NNC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	0	-254	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	412.657048891692	945	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1344	False	NA	29	True	ATTAAA	-16	NA	124807179	124810241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124807237_124807465_124807614_124808324_124808452_124809108_124809395_124809528_124809633_124809947
ENSMUSG00000023505.14_124807180_124810241_5	chr6	+	1163	6	NIC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	0	-254	intron_retention	FALSE	canonical	0	0	junction_3	431.365552634885	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1344	False	NA	29	True	ATTAAA	-16	NA	124807179	124810241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_124807237_124807326_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_124807180_124810241_6	chr6	+	1018	6	NNC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	0	-254	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	420.683539017157	2770	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1344	False	NA	29	True	ATTAAA	-16	NA	124807179	124810241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124807237_124807465_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809953
ENSMUSG00000023505.14_124807180_124810241_7	chr6	+	1681	5	FSM	ENSMUSG00000023505.14	ENSMUST00000134637.8	1917	5	-18	254	0	-254	multi-exon	FALSE	canonical	3	695	junction_1	91.4969261778777	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1344	False	NA	29	True	ATTAAA	-16	NA	124807179	124810241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_124807237_124807465_124807614_124808324_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_124807180_124810241_8	chr6	+	1018	6	NNC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	0	-254	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	347.474660946665	412	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1344	False	NA	29	True	ATTAAA	-16	NA	124807179	124810241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124807237_124807465_124807614_124808324_124808446_124809108_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_124807180_124810241_9	chr6	+	895	6	NNC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	0	-254	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	347.474660946665	115	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1344	False	NA	29	True	ATTAAA	-16	NA	124807179	124810241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124807237_124807465_124807614_124808324_124808452_124809237_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_124807180_124810495_1	chr6	+	1278	6	FSM	ENSMUSG00000023505.14	ENSMUST00000024270.14	1976	6	529	169	0	0	multi-exon	FALSE	canonical	0	0	junction_3	347.474660946665	6813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTCATGATCTTTCCC	1344	False	NA	NA	False	CATAAA	-25	NA	124807179	124810495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_124807237_124807465_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_124807180_124810664_1	chr6	+	1447	6	FSM	ENSMUSG00000023505.14	ENSMUST00000024270.14	1976	6	529	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	347.474660946665	7045	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTTGTCTTGTCTTGCCT	1344	False	NA	39	True	NA	NA	NA	124807179	124810664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_124807237_124807465_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
ENSMUSG00000023505.14_124807180_124810664_2	chr6	+	1586	6	NIC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_3	431.365552634885	2432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTTGTCTTGTCTTGCCT	1344	False	NA	39	True	NA	NA	NA	124807179	124810664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_124807237_124807326_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
ENSMUSG00000023707.14_124250384_124253148_1	chr5	+	1174	7	FSM	ENSMUSG00000023707.14	ENSMUST00000024470.13	1596	7	24	398	0	0	multi-exon	FALSE	canonical	3	59	junction_5	17.423642940939	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTTTGGGTCATTCTTT	NA	False	NA	25	True	AATAAA	-40	NA	124250383	124253148	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127_124252256_124252450_124252709_124252777
ENSMUSG00000023707.14_124250384_124253148_2	chr5	+	955	6	FSM	ENSMUSG00000023707.14	ENSMUST00000198505.2	600	6	-36	-319	0	0	multi-exon	FALSE	canonical	2	9	junction_4	36.149688795341	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTTTGGGTCATTCTTT	NA	False	NA	25	True	AATAAA	-40	NA	124250383	124253148	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252541_124252709_124252777
ENSMUSG00000023723.18_88095250_88101797_1	chr11	+	760	5	FSM	ENSMUSG00000023723.18	ENSMUST00000024486.14	1332	5	36	536	0	0	multi-exon	FALSE	canonical	3	245	junction_1	23.6999472573253	1663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACTTTGAAACTGTAAAT	NA	False	NA	NA	False	AATAAA	-27	NA	88095249	88101797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_88095312_88096014_88096186_88100678_88100757_88100929_88101057_88101475
ENSMUSG00000023723.18_88095250_88101797_2	chr11	+	855	5	FSM	ENSMUSG00000023723.18	ENSMUST00000118784.8	1404	5	13	536	0	0	multi-exon	FALSE	canonical	3	37	junction_1	110.143939915004	952	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACTTTGAAACTGTAAAT	NA	False	NA	NA	False	AATAAA	-27	NA	88095249	88101797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_88095407_88096014_88096186_88100678_88100757_88100929_88101057_88101475
ENSMUSG00000023723.18_88095250_88102189_1	chr11	+	1152	5	FSM	ENSMUSG00000023723.18	ENSMUST00000024486.14	1332	5	36	144	0	-144	multi-exon	FALSE	canonical	3	245	junction_1	23.6999472573253	2138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGACGTTTTCCTAGTCA	NA	False	NA	13	True	AATAAA	-19	NA	88095249	88102189	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_88095312_88096014_88096186_88100678_88100757_88100929_88101057_88101475
ENSMUSG00000023755.11_98775659_98778812_1	chr15	-	1147	8	FSM	ENSMUSG00000023755.11	ENSMUST00000147015.2	1038	8	159	-268	-30	0	multi-exon	FALSE	canonical	3	19	junction_7	64.8753907620649	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	-22	True	AATAAA	-20	NA	98778812	98775658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98778595
ENSMUSG00000023755.11_98775659_98778971_1	chr15	-	1306	8	FSM	ENSMUSG00000023755.11	ENSMUST00000147015.2	1038	8	0	-268	0	0	multi-exon	FALSE	canonical	3	19	junction_7	64.8753907620649	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	-22	True	AATAAA	-20	NA	98778971	98775658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98778595
ENSMUSG00000023755.11_98775659_98779157_1	chr15	-	1009	7	NIC	ENSMUSG00000023755.11	novel	1069	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_2	74.1117774416155	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	-22	True	AATAAA	-20	NA	98779157	98775658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_98776179_98776333_98776416_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
ENSMUSG00000023755.11_98775659_98779157_2	chr15	-	1057	8	FSM	ENSMUSG00000023755.11	ENSMUST00000024518.11	1261	8	204	0	0	0	multi-exon	FALSE	canonical	3	165	junction_2	21.3388598283861	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	-22	True	AATAAA	-20	NA	98779157	98775658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
ENSMUSG00000023755.11_98775659_98779255_1	chr15	-	1107	7	NIC	ENSMUSG00000023755.11	novel	1261	8	NA	NA	-40	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_2	74.1117774416155	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	-22	True	AATAAA	-20	NA	98779255	98775658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_98776179_98776333_98776416_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
ENSMUSG00000023755.11_98775659_98779255_2	chr15	-	1155	8	FSM	ENSMUSG00000023755.11	ENSMUST00000024518.11	1261	8	106	0	-40	0	multi-exon	FALSE	canonical	3	165	junction_2	21.3388598283861	1074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	-22	True	AATAAA	-20	NA	98779255	98775658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
ENSMUSG00000023755.11_98775659_98779361_1	chr15	-	1098	9	NNC	ENSMUSG00000023755.11	novel	1261	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_8	63.9526191801399	899	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	-22	True	AATAAA	-20	NA	98779361	98775658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030_98779166_98779328
ENSMUSG00000023764.19_3126776_3143428_1	chr11	-	1169	5	NIC	ENSMUSG00000023764.19	novel	914	8	NA	NA	-4	8792	combination_of_known_splicesites	FALSE	canonical	3	10	junction_4	39.3025126423235	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAGAAAAGAAAAAA	8014	False	NA	NA	False	NA	NA	NA	3143428	3126775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_3127522_3129396_3129508_3136064_3136137_3137239_3137411_3143359
ENSMUSG00000023764.19_3129338_3143411_1	chr11	-	581	5	ISM	ENSMUSG00000023764.19	ENSMUST00000138126.8	2916	22	10	44406	0	6230	5prime_fragment	FALSE	canonical	3	72	junction_1	15.833114033569	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTATCCAATGTCTTGTT	8031	False	NA	NA	False	AATACA	-18	NA	3143411	3129337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_3129508_3136064_3136137_3137239_3137411_3138940_3139057_3143359
ENSMUSG00000023791.19_31903238_31918548_1	chr16	-	1145	7	NIC	ENSMUSG00000023791.19	novel	993	6	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_5	171.687377391454	2066	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGGTTAGTTTGTCTT	NA	False	NA	-4	True	AATAAA	-26	NA	31918548	31903237	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31914370_31914527_31915817_31915882_31918287
ENSMUSG00000023791.19_31903238_31918548_2	chr16	-	1139	7	NIC	ENSMUSG00000023791.19	novel	940	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_5	173.76516720371	1034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGGTTAGTTTGTCTT	NA	False	NA	-4	True	AATAAA	-26	NA	31918548	31903237	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31914370_31914527_31915817_31915882_31918293
ENSMUSG00000023791.19_31908471_31918548_1	chr16	-	934	4	NNC	ENSMUSG00000023791.19	novel	670	2	NA	NA	-2	-2151	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	180.697414357692	134	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCACTAGCTCTTGCTTAT	NA	False	NA	NA	False	AATAAA	-15	NA	31918548	31908470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_31908938_31911161_31911304_31915817_31915882_31918287
ENSMUSG00000023800.16_3569531_3608030_1	chr17	+	1410	7	NIC	ENSMUSG00000023800.16	novel	3184	13	NA	NA	28793	26411	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGCGCGCAGGGGGTGG	NA	False	NA	NA	False	NA	NA	NA	3569530	3608030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_3570071_3571919_3572048_3586352_3586473_3593371_3593524_3595857_3595967_3605206_3605359_3607821
ENSMUSG00000023805.18_6094341_6130016_1	chr17	+	2137	17	NIC	ENSMUSG00000023805.18	novel	3498	23	NA	NA	18990	35451	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTGAGGGCTTGACCCC	NA	False	NA	NA	False	NA	NA	NA	6094340	6130016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6111822_6111937_6115223_6115353_6116945_6117068_6117803_6117936_6119573_6119664_6121027_6121165_6122108_6122146_6124430_6124523_6129893
ENSMUSG00000023827.9_12338171_12370999_1	chr17	+	553	2	ISM	ENSMUSG00000023827.9	ENSMUST00000024594.9	1915	9	0	67533	0	12457	5prime_fragment	FALSE	canonical	3	227	junction_1	0	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAATC	NA	False	NA	NA	False	NA	NA	NA	12338170	12370999	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_12338303_12370578
ENSMUSG00000023827.9_12370659_12438532_1	chr17	+	1703	8	ISM	ENSMUSG00000023827.9	ENSMUST00000024594.9	1915	9	32488	0	0	0	3prime_fragment	FALSE	canonical	3	218	junction_2	26.7146676825252	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGCAAGTGTTTACACAA	NA	False	NA	28	True	ATTAAA	-19	NA	12370658	12438532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
ENSMUSG00000023832.15_13161925_13179258_1	chr17	-	2205	8	FSM	ENSMUSG00000023832.15	ENSMUST00000159697.2	1800	8	0	-405	0	0	multi-exon	FALSE	canonical	3	922	junction_2	94.6542580734146	830	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCTTGTCAGTGAGTT	NA	False	NA	0	True	NA	NA	NA	13179258	13161924	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881
ENSMUSG00000023832.15_13175430_13179634_1	chr17	-	536	3	NNC	ENSMUSG00000023832.15	novel	2250	9	NA	NA	0	-12140	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	491.5	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGGCCTTGCTGCTTCAT	NA	False	NA	NA	False	NA	NA	NA	13179634	13175429	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_13175692_13178881_13179017_13179495
ENSMUSG00000023861.18_8502628_8516494_1	chr17	+	788	3	NIC	ENSMUSG00000023861.18	novel	920	5	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	1	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAGTGTGACTATATATC	2155	False	NA	5	True	AATAAA	-19	NA	8502627	8516494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_8502794_8515366_8515464_8515969
ENSMUSG00000023861.18_8502628_8516494_2	chr17	+	929	4	NIC	ENSMUSG00000023861.18	novel	920	5	NA	NA	0	1	intron_retention	FALSE	non_canonical	0	0	junction_1	474.440254990611	6533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAGTGTGACTATATATC	2155	False	NA	5	True	AATAAA	-19	NA	8502627	8516494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_8502794_8515358_8515464_8515655_8515789_8515969
ENSMUSG00000023861.18_8502628_8516494_3	chr17	+	1002	5	FSM	ENSMUSG00000023861.18	ENSMUST00000124023.8	555	5	-56	-391	0	1	multi-exon	FALSE	canonical	3	18	junction_2	407.512576493045	2018	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAGTGTGACTATATATC	2155	False	NA	5	True	AATAAA	-19	NA	8502627	8516494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_8502794_8512246_8512328_8515366_8515464_8515655_8515789_8515969
ENSMUSG00000023861.18_8502628_8516494_4	chr17	+	1060	5	NIC	ENSMUSG00000023861.18	novel	920	5	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	502.14888230484	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAGTGTGACTATATATC	2155	False	NA	5	True	AATAAA	-19	NA	8502627	8516494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_8502794_8507431_8507571_8515366_8515464_8515655_8515789_8515969
ENSMUSG00000023861.18_8502628_8516494_5	chr17	+	927	4	NNC	ENSMUSG00000023861.18	novel	920	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	474.440254990611	5687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAGTGTGACTATATATC	2155	False	NA	5	True	AATAAA	-19	NA	8502627	8516494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_8502800_8515366_8515464_8515655_8515789_8515969
ENSMUSG00000023883.14_15165271_15175191_1	chr17	-	843	6	NIC	ENSMUSG00000023883.14	novel	1663	12	NA	NA	-2223	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	362.232301154936	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGATGACCTTAAACATCA	NA	False	NA	-19	True	AATAAA	-16	NA	15175191	15165270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_15165447_15166916_15167026_15170821_15170978_15172881_15173036_15174276_15174387_15175053
ENSMUSG00000023892.9_21670636_21683725_2	chr17	+	450	5	FSM	ENSMUSG00000023892.9	ENSMUST00000039577.8	2574	5	0	2124	0	-2124	multi-exon	FALSE	canonical	3	80	junction_1	22.3271135617661	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCCAACTGTGCCCTTTA	NA	False	NA	NA	False	AATAAA	-22	NA	21670635	21683725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_21670684_21672698_21672790_21676558_21676651_21681922_21682050_21683633
ENSMUSG00000023892.9_21670636_21685853_1	chr17	+	2564	5	NNC	ENSMUSG00000023892.9	novel	2574	5	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	49.3931928508373	207	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTCTCTCTCTCTGTCTCT	NA	False	NA	6	True	AATAAA	-22	NA	21670635	21685853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_21670670_21672698_21672790_21676558_21676651_21681922_21682050_21683633
ENSMUSG00000023902.19_23819830_23829993_1	chr17	+	2440	5	NIC	ENSMUSG00000023902.19	novel	2609	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	18	junction_2	109.005733794145	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGATTTTTTTACTTTT	879	False	NA	35	True	AGTAAA	-19	NA	23819829	23829993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_23819934_23824478_23824939_23826553_23826619_23827081_23827140_23828240
ENSMUSG00000023904.11_23887588_23892823_1	chr17	+	1421	14	Fusion	ENSMUSG00000023904.11_ENSMUSG00000043782.10	novel	1941	10	NA	NA	2488	-1325	multi-exon	FALSE	non_canonical	0	0	junction_1	0	755	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCCGCGCCTGCGTAAA	6709	False	NA	NA	False	NA	NA	NA	23887587	23892823	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr17_+_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892714_23892807
ENSMUSG00000023904.11_23887588_23892823_2	chr17	+	1414	14	Fusion	ENSMUSG00000023904.11_ENSMUSG00000043782.10	novel	1941	10	NA	NA	2488	-1325	multi-exon	FALSE	non_canonical	0	0	junction_1	0	688	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCCGCGCCTGCGTAAA	6709	False	NA	NA	False	NA	NA	NA	23887587	23892823	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr17_+_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892714_23892814
ENSMUSG00000023904.11_23892601_23894201_1	chr17	+	837	4	NNC	ENSMUSG00000023904.11	novel	597	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	146.645453011298	5901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892600	23894201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_23892865_23892942_23893043_23893520_23893650_23893857
ENSMUSG00000023904.11_23892941_23894201_1	chr17	+	559	3	NNC	ENSMUSG00000023904.11	novel	946	3	NA	NA	340	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	200.5	589	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892940	23894201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_23893043_23893536_23893650_23893857
ENSMUSG00000023904.11_23892941_23894201_2	chr17	+	567	3	NNC	ENSMUSG00000023904.11	novel	946	3	NA	NA	340	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	171.5	1499	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892940	23894201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_23893043_23893520_23893650_23893865
ENSMUSG00000023904.11_23892941_23894201_3	chr17	+	587	3	FSM	ENSMUSG00000023904.11	ENSMUST00000024697.5	946	3	359	0	340	0	multi-exon	FALSE	canonical	0	0	junction_1	200.5	3817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892940	23894201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_23893043_23893508_23893650_23893857
ENSMUSG00000023906.4_23898346_23901420_1	chr17	+	1499	3	FSM	ENSMUSG00000023906.4	ENSMUST00000024699.4	1622	3	123	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTGATGTCTCTTGGT	NA	False	NA	9	True	AATAAA	-23	NA	23898345	23901420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_23898382_23898731_23898796_23900021
ENSMUSG00000023909.5_23945310_23955709_1	chr17	-	2045	8	NIC	ENSMUSG00000023909.5	novel	2575	3	NA	NA	3663	9850	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	887	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTGCGCACCGAGGTCTCC	NA	False	NA	NA	False	NA	NA	NA	23955709	23945309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_23945616_23951310_23951799_23952796_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
ENSMUSG00000023909.5_23945443_23955709_1	chr17	-	1900	8	NNC	ENSMUSG00000023909.5	novel	2575	3	NA	NA	3663	9717	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	866	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGCGCGCGGAGCCAGCT	NA	False	NA	NA	False	NA	NA	NA	23955709	23945442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_23945616_23951310_23951799_23952796_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955364_23955468
ENSMUSG00000023909.5_23945443_23955709_2	chr17	-	1511	8	NNC	ENSMUSG00000023909.5	novel	2575	3	NA	NA	3663	9717	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	203	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGCGCGCGGAGCCAGCT	NA	False	NA	NA	False	NA	NA	NA	23955709	23945442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_23945616_23951310_23951799_23952796_23952890_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
ENSMUSG00000023909.5_23945443_23955709_3	chr17	-	1912	8	NIC	ENSMUSG00000023909.5	novel	2575	3	NA	NA	3663	9717	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	883	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGCGCGCGGAGCCAGCT	NA	False	NA	NA	False	NA	NA	NA	23955709	23945442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_23945616_23951310_23951799_23952796_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
ENSMUSG00000023911.13_23995890_24005204_1	chr17	-	667	3	NNC	ENSMUSG00000023911.13	novel	694	3	NA	NA	-149	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	1	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTAGTTTTTGTTGTTGT	NA	False	NA	0	True	AATAAA	-26	NA	24005204	23995889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_23996074_23998601_23999031_24005150
ENSMUSG00000023919.9_41233942_41245442_1	chr17	-	1440	9	NNC	ENSMUSG00000023919.10	novel	1942	9	NA	NA	496	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	51.2591455254572	694	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGATGTGTGAGTAGAACT	NA	False	NA	-1	True	AATAAA	-27	NA	41245442	41233941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_41234508_41235179_41235258_41235392_41235513_41238029_41238160_41240904_41240971_41242540_41242662_41243686_41243742_41243971_41244107_41245273
ENSMUSG00000023919.9_41236593_41245442_1	chr17	-	1451	7	NIC	ENSMUSG00000023919.10	novel	728	2	NA	NA	496	107	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	58.0631839751605	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAACCGGTGGTTGAGTC	NA	False	NA	NA	False	NA	NA	NA	41245442	41236592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_41237362_41238029_41238160_41240904_41240971_41242540_41242668_41243686_41243742_41243971_41244107_41245273
ENSMUSG00000023921.10_41245576_41271806_1	chr17	+	2601	13	FSM	ENSMUSG00000023921.10	ENSMUST00000169611.4	3674	13	0	1073	0	-1073	multi-exon	FALSE	canonical	3	278	junction_5	30.8112533554436	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCTGAAAATCATTTATAC	NA	False	NA	NA	False	AATACA	-39	NA	41245575	41271806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_41245671_41247934_41248354_41249405_41249774_41252206_41252365_41254697_41254870_41257912_41258162_41262645_41262758_41263669_41263786_41265992_41266109_41267097_41267230_41269220_41269369_41269592_41269761_41271458
ENSMUSG00000023921.10_41245576_41272551_1	chr17	+	3346	13	FSM	ENSMUSG00000023921.10	ENSMUST00000169611.4	3674	13	0	328	0	-328	multi-exon	FALSE	canonical	3	278	junction_5	30.8112533554436	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTAGTGTGATGTTAC	NA	False	NA	16	True	AATAAA	-17	NA	41245575	41272551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_41245671_41247934_41248354_41249405_41249774_41252206_41252365_41254697_41254870_41257912_41258162_41262645_41262758_41263669_41263786_41265992_41266109_41267097_41267230_41269220_41269369_41269592_41269761_41271458
ENSMUSG00000023932.10_45702810_45744341_1	chr17	-	2705	16	FSM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	322	0	126	0	multi-exon	TRUE	canonical	3	561	junction_9	75.0022221893014	866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTAGCCTTTTGTTTGAA	2506	False	NA	-2	True	AATAAA	-20	NA	45744341	45702809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
ENSMUSG00000023932.10_45702810_45744471_1	chr17	-	2835	16	FSM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	192	0	-4	0	multi-exon	FALSE	canonical	3	561	junction_9	75.0022221893014	1093	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTAGCCTTTTGTTTGAA	2376	False	NA	-2	True	AATAAA	-20	NA	45744471	45702809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
ENSMUSG00000023939.8_46006264_46009421_1	chr17	+	600	3	NNC	ENSMUSG00000023939.8	novel	510	2	NA	NA	-78	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	542	8516	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGAGCTGTGATCG	NA	False	NA	37	True	AATAAA	-26	NA	46006263	46009421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_46006325_46006407_46006499_46008973
ENSMUSG00000023940.15_53983082_53996306_1	chr17	-	2336	9	NIC	ENSMUSG00000023940.15	novel	3628	9	NA	NA	0	-1268	combination_of_known_junctions	FALSE	canonical	3	16	junction_8	149.294538999255	1280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTATGTGTGTATGTATG	NA	False	NA	-3	True	AATAAA	-24	NA	53996306	53983081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_53983740_53983934_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53995017_53995149_53996207
ENSMUSG00000023940.15_53983082_53996306_2	chr17	-	2174	8	NIC	ENSMUSG00000023940.15	novel	3628	9	NA	NA	0	-1268	combination_of_known_splicesites	FALSE	canonical	3	13	junction_7	157.427275078925	1177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTATGTGTGTATGTATG	NA	False	NA	-3	True	AATAAA	-24	NA	53996306	53983081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_53983740_53983934_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53996238
ENSMUSG00000023940.15_53983082_53996326_1	chr17	-	1394	8	NNC	ENSMUSG00000023940.15	novel	3628	9	NA	NA	-12	-1268	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	156.691559753419	1034	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTATGTGTGTATGTATG	NA	False	NA	-3	True	AATAAA	-24	NA	53996326	53983081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_53983740_53986678_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53995017_53995149_53996238
ENSMUSG00000023942.16_45896128_45906453_1	chr17	-	2047	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	1453	junction_5	311.5369990469	1321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	-3	True	AATAAA	-16	NA	45906453	45896127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
ENSMUSG00000023942.16_45896128_45906453_2	chr17	-	1952	13	FSM	ENSMUSG00000023942.16	ENSMUST00000051574.13	1996	13	45	-1	-12	0	multi-exon	FALSE	canonical	3	154	junction_12	699.864927444337	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	-3	True	AATAAA	-16	NA	45906453	45896127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
ENSMUSG00000023942.16_45896128_45910544_1	chr17	-	2153	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	109	junction_13	684.125062098821	667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	-3	True	AATAAA	-16	NA	45910544	45896127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45910398
ENSMUSG00000023942.16_45896128_45910544_2	chr17	-	2147	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	109	junction_13	645.50828557468	853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	-3	True	AATAAA	-16	NA	45910544	45896127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45910398
ENSMUSG00000023944.15_45878701_45884197_1	chr17	-	2511	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	0	0	intron_retention	TRUE	canonical	0	0	junction_2	3270.0116223035	80721	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTGCTCTCCTTGTAAC	NA	False	NA	-24	True	AATAAA	-19	NA	45884197	45878700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_45879051_45879154_45879489_45879792_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
ENSMUSG00000023960.14_44389770_44394273_1	chr17	+	1607	3	ISM	ENSMUSG00000023960.14	ENSMUST00000024756.5	2534	4	34	3177	0	-3177	5prime_fragment	FALSE	canonical	3	19	junction_2	5.5	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGAAGGCTGTTTCCTGA	NA	False	NA	8	True	AGTAAA	-26	NA	44389769	44394273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_44389874_44391537_44392402_44393634
ENSMUSG00000023967.10_46421921_46439719_1	chr17	+	758	6	FSM	ENSMUSG00000023967.10	ENSMUST00000024763.10	884	6	9	117	0	0	multi-exon	FALSE	canonical	3	1040	junction_5	46.4732180938656	1847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCCAGGAGCTGGATCTC	NA	False	NA	-98	True	NA	NA	NA	46421920	46439719	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_46422056_46428865_46428898_46433649_46433758_46436215_46436340_46436568_46436639_46439430
ENSMUSG00000023967.10_46421921_46439836_1	chr17	+	872	6	NNC	ENSMUSG00000023967.10	novel	884	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	442.007511248395	8603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGGTCAGTGCTTAGAA	NA	False	NA	19	True	AATAAA	-19	NA	46421920	46439836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_46422056_46428865_46428902_46433656_46433758_46436215_46436340_46436568_46436639_46439430
ENSMUSG00000023967.10_46421921_46439836_2	chr17	+	847	5	NNC	ENSMUSG00000023967.10	novel	884	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	481.572943592142	7908	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGGTCAGTGCTTAGAA	NA	False	NA	19	True	AATAAA	-19	NA	46421920	46439836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_46422060_46433649_46433758_46436215_46436340_46436568_46436639_46439430
ENSMUSG00000023971.10_46978147_46985232_1	chr17	-	1284	8	NNC	ENSMUSG00000023971.10	novel	1289	7	NA	NA	-19	237	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	153.326382569461	2849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCCGGCCTGTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	46985232	46978146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_46978168_46978366_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
ENSMUSG00000023971.10_46978169_46985232_1	chr17	-	1461	7	FSM	ENSMUSG00000023971.10	ENSMUST00000233136.2	1289	7	46	-218	-19	215	multi-exon	FALSE	canonical	3	390	junction_2	28.055995596109	3263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTTAAGGCATGCACCAG	NA	False	NA	NA	False	NA	NA	NA	46985232	46978168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
ENSMUSG00000023971.10_46978384_46985232_1	chr17	-	1241	7	NNC	ENSMUSG00000023971.10	novel	1195	7	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	163.702643703624	1784	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGGGG	NA	False	NA	NA	False	NA	NA	NA	46985232	46978383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_46979008_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
ENSMUSG00000023971.10_46978384_46985232_2	chr17	-	1104	6	NIC	ENSMUSG00000023971.10	novel	1195	7	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_5	165.05514230099	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGGGG	NA	False	NA	NA	False	NA	NA	NA	46985232	46978383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46985122
ENSMUSG00000023973.14_47046682_47063123_1	chr17	-	1898	7	NNC	ENSMUSG00000023973.14	novel	1908	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	244.580593397487	1556	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTGCTACTGCTATGAA	NA	False	NA	-18	True	NA	NA	NA	47063123	47046681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_47047835_47048100_47048219_47048652_47048776_47054111_47054209_47054310_47054369_47058346_47058471_47062898
ENSMUSG00000023973.14_47046966_47063123_1	chr17	-	1556	6	FSM	ENSMUSG00000023973.14	ENSMUST00000059844.13	1908	6	17	335	0	-284	multi-exon	FALSE	canonical	3	416	junction_4	48.1730214954387	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTGGTTCCTGGGTCCTC	NA	False	NA	-1	True	AGTAAA	-17	NA	47063123	47046965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_47047835_47048100_47048219_47048652_47048776_47054111_47054209_47058346_47058471_47062898
ENSMUSG00000023973.14_47057913_47063123_1	chr17	-	783	2	FSM	ENSMUSG00000023973.14	ENSMUST00000148656.2	531	2	-20	-232	0	0	multi-exon	FALSE	canonical	3	518	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGGACAGTGTGCTCATA	NA	False	NA	NA	False	NA	NA	NA	47063123	47057912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_47058471_47062898
ENSMUSG00000023980.8_47799207_47813212_1	chr17	-	2547	9	FSM	ENSMUSG00000023980.8	ENSMUST00000067103.4	2784	9	5	232	0	0	multi-exon	FALSE	canonical	3	80	junction_1	52.1152568831815	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATAGGGCCTCTCAAAT	NA	False	NA	-4	True	AATAAA	-31	NA	47813212	47799206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_47800822_47801067_47801208_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ENSMUSG00000023980.8_47803974_47813212_1	chr17	-	1305	7	FSM	ENSMUSG00000023980.8	ENSMUST00000233274.2	1692	7	2	385	0	-385	multi-exon	FALSE	canonical	3	187	junction_3	14.5535409971442	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTACTATTCTGGTAGC	NA	False	NA	-9	True	AATAAA	-16	NA	47813212	47803973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ENSMUSG00000023980.8_47803974_47813212_2	chr17	-	1209	8	NNC	ENSMUSG00000023980.8	novel	1692	7	NA	NA	0	-385	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	70.9843328503134	225	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTACTATTCTGGTAGC	NA	False	NA	-9	True	AATAAA	-16	NA	47813212	47803973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_47804391_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ENSMUSG00000023982.9_47705483_47706503_1	chr17	-	388	3	ISM	ENSMUSG00000023982.9	ENSMUST00000059348.9	873	4	5006	0	5006	0	3prime_fragment	FALSE	canonical	3	65	junction_1	4	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGAGTCTCAGCTTTTTT	6842	False	NA	0	True	NA	NA	NA	47706503	47705482	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_47705746_47706032_47706127_47706472
ENSMUSG00000023982.9_47705483_47706639_1	chr17	-	524	3	ISM	ENSMUSG00000023982.9	ENSMUST00000059348.9	873	4	4870	0	4870	0	3prime_fragment	FALSE	canonical	3	65	junction_1	4	792	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGAGTCTCAGCTTTTTT	6706	False	NA	0	True	NA	NA	NA	47706639	47705482	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_47705746_47706032_47706127_47706472
ENSMUSG00000023982.9_47705483_47706639_2	chr17	-	534	3	NNC	ENSMUSG00000023982.9	novel	873	4	NA	NA	4870	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	29	721	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGAGTCTCAGCTTTTTT	6706	False	NA	0	True	NA	NA	NA	47706639	47705482	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_47705746_47706032_47706127_47706462
ENSMUSG00000023984.18_47922523_47961221_1	chr17	+	851	4	FSM	ENSMUSG00000023984.18	ENSMUST00000130830.2	2168	4	0	1317	0	7	multi-exon	FALSE	canonical	3	20	junction_3	105.093609066711	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTATTGTCCAGAACTCA	NA	False	NA	NA	False	AATAAA	-19	NA	47922522	47961221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_47922618_47923887_47924043_47929733_47929988_47960874
ENSMUSG00000023984.18_47922523_47961221_2	chr17	+	1104	5	NNC	ENSMUSG00000023984.18	novel	2168	4	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	100.807675799018	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTATTGTCCAGAACTCA	NA	False	NA	NA	False	AATAAA	-19	NA	47922522	47961221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_47922618_47923887_47924043_47929733_47929988_47933809_47934063_47960874
ENSMUSG00000023987.15_48041370_48045407_1	chr17	+	945	6	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	3601	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	163.966338008751	3616	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCTGTTGAGTCATTT	NA	False	NA	16	True	AATAAA	-16	NA	48041369	48045407	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_48041447_48041523_48041724_48043309_48043430_48043885_48044037_48044681_48044781_48045109
ENSMUSG00000023987.15_48041701_48045408_1	chr17	+	685	5	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	3932	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	158.016415286514	2061	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCTGTTGAGTCATTTG	NA	False	NA	17	True	AATAAA	-17	NA	48041700	48045408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_48041724_48043309_48043430_48043885_48044037_48044681_48044781_48045116
ENSMUSG00000023987.15_48042367_48045408_1	chr17	+	1612	4	ISM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	4600	-1	4598	1	3prime_fragment	FALSE	canonical	3	283	junction_1	65.5303152916436	1973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCTGTTGAGTCATTTG	NA	False	NA	17	True	AATAAA	-17	NA	48042366	48045408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_48043430_48043885_48044037_48044681_48044781_48045109
ENSMUSG00000023987.15_48042367_48045408_2	chr17	+	1288	5	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	4598	1	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	166.164827806609	1733	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCTGTTGAGTCATTTG	NA	False	NA	17	True	AATAAA	-17	NA	48042366	48045408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_48042986_48043309_48043430_48043885_48044037_48044681_48044781_48045109
ENSMUSG00000023987.15_48042927_48045408_1	chr17	+	1052	4	ISM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	5160	-1	5158	1	3prime_fragment	FALSE	canonical	3	283	junction_1	65.5303152916436	1832	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCTGTTGAGTCATTTG	NA	False	NA	17	True	AATAAA	-17	NA	48042926	48045408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_48043430_48043885_48044037_48044681_48044781_48045109
ENSMUSG00000023987.15_48042927_48045408_2	chr17	+	728	5	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	5158	1	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	166.164827806609	1655	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCTGTTGAGTCATTTG	NA	False	NA	17	True	AATAAA	-17	NA	48042926	48045408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_48042986_48043309_48043430_48043885_48044037_48044681_48044781_48045109
ENSMUSG00000023987.15_48043555_48045408_1	chr17	+	645	4	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	5786	1	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	164.050805138733	693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCTGTTGAGTCATTTG	NA	False	NA	17	True	AATAAA	-17	NA	48043554	48045408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_48043651_48043885_48044037_48044681_48044781_48045109
ENSMUSG00000023987.15_48043614_48045408_1	chr17	+	620	4	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	5845	1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	196.577380862262	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCTGTTGAGTCATTTG	NA	False	NA	17	True	AATAAA	-17	NA	48043613	48045408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_48043685_48043885_48044037_48044681_48044781_48045109
ENSMUSG00000023987.15_48043706_48045408_1	chr17	+	729	3	ISM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	5939	-1	5937	1	3prime_fragment	FALSE	canonical	3	421	junction_1	1	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCTGTTGAGTCATTTG	NA	False	NA	17	True	AATAAA	-17	NA	48043705	48045408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_48044037_48044681_48044781_48045109
ENSMUSG00000023987.15_48044475_48045408_1	chr17	+	605	2	ISM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	6708	-1	6706	1	3prime_fragment	FALSE	canonical	3	423	junction_1	0	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCTGTTGAGTCATTTG	NA	False	NA	17	True	AATAAA	-17	NA	48044474	48045408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_48044781_48045109
ENSMUSG00000023987.15_48044475_48045408_2	chr17	+	494	3	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	6706	1	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	200.5	260	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCTGTTGAGTCATTTG	NA	False	NA	17	True	AATAAA	-17	NA	48044474	48045408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_48044571_48044681_48044781_48045109
ENSMUSG00000023988.9_47904395_47910614_1	chr17	-	1968	5	NNC	ENSMUSG00000023988.9	novel	3854	7	NA	NA	11803	5861	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1338	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTAGCAACCGTGGAATG	3595	False	NA	NA	False	NA	NA	NA	47910614	47904394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_47904778_47905667_47905875_47908344_47908505_47908927_47909065_47909533
ENSMUSG00000023988.9_47906993_47910614_1	chr17	-	1526	4	NIC	ENSMUSG00000023988.9	novel	3854	7	NA	NA	11803	3263	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	282	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACAGCAGTCAGGGGCCCC	3595	False	NA	NA	False	NA	NA	NA	47910614	47906992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_47907141_47908344_47908505_47908927_47909065_47909533
ENSMUSG00000023988.9_47908089_47910614_1	chr17	-	1491	4	NNC	ENSMUSG00000023988.9	novel	3854	7	NA	NA	11803	2167	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	235	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGCTTCGGAAATCTCTT	3595	False	NA	NA	False	NA	NA	NA	47910614	47908088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_47908202_47908344_47908505_47908927_47909065_47909533
ENSMUSG00000023990.19_48050785_48103341_1	chr17	+	2161	9	NIC	ENSMUSG00000023990.19	novel	2296	8	NA	NA	957	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	141.519378090069	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATGTTGTCCTGGCTCTGC	NA	False	NA	15	True	AGTAAA	-15	NA	48050784	48103341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_48050894_48096889_48097122_48097202_48097458_48097855_48097937_48098950_48099072_48099161_48099219_48099833_48099910_48100585_48100734_48102259
ENSMUSG00000023995.13_48755463_48758545_1	chr17	-	858	5	NIC	ENSMUSG00000023995.13	novel	956	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	11.6404467268228	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCCTGGTGTAAGGTGGA	NA	False	NA	-1	True	AATAAA	-19	NA	48758545	48755462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_48755829_48756047_48756190_48756910_48757006_48757899_48758090_48758480
ENSMUSG00000024002.19_32432584_32503064_1	chr17	-	1893	10	ISM	ENSMUSG00000024002.19	ENSMUST00000120276.9	4486	13	19	8700	0	0	5prime_fragment	FALSE	canonical	3	16	junction_9	85.0269383602255	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTGGAGGAAAATAAAAAAAG	NA	False	NA	40	True	NA	NA	NA	32503064	32432583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32472014_32472175_32503036
ENSMUSG00000024006.18_29191391_29226925_1	chr17	-	1773	14	FSM	ENSMUSG00000024006.18	ENSMUST00000119274.3	3354	14	44	1537	0	522	multi-exon	FALSE	canonical	3	151	junction_13	173.563487011723	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGATTGTAAGTGGATATT	NA	False	NA	NA	False	AATACA	-21	NA	29226925	29191390	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219119_29226684
ENSMUSG00000024006.18_29198923_29226925_1	chr17	-	1486	8	FSM	ENSMUSG00000024006.18	ENSMUST00000126893.8	1663	8	-6	183	0	-183	multi-exon	FALSE	canonical	3	15	junction_1	269.646177841426	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAGTCTCATATAGTAAA	NA	False	NA	NA	False	NA	NA	NA	29226925	29198922	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_29199497_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
ENSMUSG00000024007.16_29469803_29482923_1	chr17	-	1197	4	NNC	ENSMUSG00000024007.16	novel	1462	4	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	722.841307311332	5871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGTGGTCTAGTATTGT	9926	False	NA	-25	True	AATAAA	-22	NA	29482923	29469802	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_29470700_29471223_29471293_29480710_29480858_29482839
ENSMUSG00000024007.16_29469803_29482923_3	chr17	-	1191	4	NNC	ENSMUSG00000024007.16	novel	1462	4	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	722.841307311332	5700	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGTGGTCTAGTATTGT	9926	False	NA	-25	True	AATAAA	-22	NA	29482923	29469802	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_29470700_29471223_29471293_29480710_29480858_29482845
ENSMUSG00000024007.16_29469803_29482923_4	chr17	-	1193	4	NNC	ENSMUSG00000024007.16	novel	1462	4	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	682.003095463813	5709	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGTGGTCTAGTATTGT	9926	False	NA	-25	True	AATAAA	-22	NA	29482923	29469802	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_29470700_29471223_29471287_29480710_29480866_29482845
ENSMUSG00000024007.16_29470199_29482923_1	chr17	-	803	4	FSM	ENSMUSG00000024007.16	ENSMUST00000024802.10	1462	4	237	422	-1	0	multi-exon	FALSE	canonical	3	1356	junction_1	125.889722464633	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGCTGCTTCTGACACTA	9926	False	NA	NA	False	NA	NA	NA	29482923	29470198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_29470700_29471223_29471293_29480710_29480866_29482845
ENSMUSG00000024012.19_29551050_29557775_1	chr17	-	1049	6	ISM	ENSMUSG00000024012.19	ENSMUST00000127423.3	1267	9	1735	-8	1652	0	3prime_fragment	FALSE	canonical	3	643	junction_4	214.212044479296	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGCAAGCCTCTTAT	NA	False	NA	-9	True	AATAAA	-21	NA	29557775	29551049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555191_29555286_29557715
ENSMUSG00000024014.9_29710960_29715086_1	chr17	+	1746	3	ISM	ENSMUSG00000024014.9	ENSMUST00000024811.9	2698	6	1233	0	-210	0	3prime_fragment	FALSE	canonical	3	1677	junction_1	101	2923	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAGTTTTCCATTCATT	NA	False	NA	17	True	AATAAA	-18	NA	29710959	29715086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_29711006_29712695_29712873_29713563
ENSMUSG00000024018.19_29923247_29935982_1	chr17	-	420	4	FSM	ENSMUSG00000024018.19	ENSMUST00000128751.3	1397	4	36	941	0	140	multi-exon	FALSE	canonical	3	251	junction_3	23.9072281027215	1397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTCCTGCTGACAAGGT	NA	False	NA	-2	True	AATAAA	-27	NA	29935982	29923246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_29923444_29924244_29924298_29924462_29924558_29935907
ENSMUSG00000024018.19_29923247_29935982_4	chr17	-	508	5	NNC	ENSMUSG00000024018.19	novel	1397	4	NA	NA	0	140	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	141.636859609355	132	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTCCTGCTGACAAGGT	NA	False	NA	-2	True	AATAAA	-27	NA	29935982	29923246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_29923444_29924244_29924298_29924462_29924558_29925635_29925724_29935907
ENSMUSG00000024019.19_29879569_29922333_1	chr17	+	3760	24	FSM	ENSMUSG00000024019.19	ENSMUST00000024816.13	6380	24	0	2620	0	0	multi-exon	TRUE	canonical	3	368	junction_15	33.7979652859003	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGGCTCTGTGCTGGGC	NA	False	NA	16	True	ATTAAA	-16	NA	29879568	29922333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29906129_29908868_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29917704_29918193_29918263_29919207_29919256_29919944_29920058_29920458_29920568_29921127
ENSMUSG00000024019.19_29879695_29922333_1	chr17	+	3634	24	FSM	ENSMUSG00000024019.19	ENSMUST00000024816.13	6380	24	126	2620	0	0	multi-exon	FALSE	canonical	3	368	junction_15	33.7979652859003	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGGCTCTGTGCTGGGC	NA	False	NA	16	True	ATTAAA	-16	NA	29879694	29922333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29906129_29908868_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29917704_29918193_29918263_29919207_29919256_29919944_29920058_29920458_29920568_29921127
ENSMUSG00000024019.19_29923247_29935982_2	chr17	+	491	5	NNC	ENSMUSG00000024019.19	novel	6380	24	NA	NA	4592	11029	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	181	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTAAGTCGCACTACGCAC	NA	False	NA	NA	False	NA	NA	NA	29923246	29935982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_29923444_29924244_29924298_29924462_29924558_29925652_29925724_29935907
ENSMUSG00000024026.14_30811835_30831589_1	chr17	-	1896	6	FSM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	44	7925	-3	0	multi-exon	FALSE	canonical	3	2881	junction_3	241.0424029087	9361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGGGCAGCAAGTCCCT	NA	False	NA	-12	True	AATAAA	-24	NA	30831589	30811834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
ENSMUSG00000024026.14_30812485_30831589_1	chr17	-	1246	6	FSM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	44	8575	-3	355	multi-exon	FALSE	canonical	3	2881	junction_3	241.0424029087	8398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTAACTTTACTTTTCTG	NA	False	NA	NA	False	TATAAA	-18	NA	30831589	30812484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
ENSMUSG00000024026.14_30812840_30831589_1	chr17	-	891	6	FSM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	44	8930	-3	0	multi-exon	FALSE	canonical	3	2881	junction_3	241.0424029087	6653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACAGCTCCCTTTAGAG	NA	False	NA	NA	False	NA	NA	NA	30831589	30812839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
ENSMUSG00000024037.14_31715096_31731252_1	chr17	-	1881	11	FSM	ENSMUSG00000024037.14	ENSMUST00000171171.9	4154	11	473	1800	0	0	multi-exon	FALSE	canonical	3	400	junction_7	39.3020355706928	587	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTGGAATGTTCAGCAG	NA	False	NA	-17	True	AATAAA	-17	NA	31731252	31715095	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722641_31728742_31728887_31729551_31729621_31731140
ENSMUSG00000024039.16_31831615_31839987_1	chr17	-	1290	8	ISM	ENSMUSG00000024039.16	ENSMUST00000067801.14	2533	17	16225	18	1869	0	3prime_fragment	FALSE	canonical	3	120	junction_2	83.8292725649907	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGTGTCGACCTTATT	9597	False	NA	-17	True	NA	NA	NA	31839987	31831614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902
ENSMUSG00000024039.16_31831615_31839987_2	chr17	-	1248	7	ISM	ENSMUSG00000024039.16	ENSMUST00000235180.2	1826	9	1869	-4	1869	0	3prime_fragment	FALSE	canonical	3	223	junction_1	32.736320298205	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGTGTCGACCTTATT	9597	False	NA	-17	True	NA	NA	NA	31839987	31831614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902
ENSMUSG00000024048.16_71301289_71309182_1	chr17	-	932	4	FSM	ENSMUSG00000024048.16	ENSMUST00000148960.8	1937	4	367	638	0	0	multi-exon	FALSE	canonical	3	2551	junction_2	294.524475496803	22984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAGTTGTTTAGCGTTA	2294	False	NA	-19	True	ATTAAA	-14	NA	71309182	71301288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71309102
ENSMUSG00000024053.12_71559169_71563369_2	chr17	-	1133	4	ISM	ENSMUSG00000024053.12	ENSMUST00000233148.2	758	5	12223	-843	-28	0	3prime_fragment	FALSE	canonical	2	7	junction_2	4.49691252107735	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTCCTTTTCTGTATTT	NA	False	NA	-7	True	AATAAA	-15	NA	71563369	71559168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_71560089_71562113_71562243_71562974_71563008_71563318
ENSMUSG00000024053.12_71559169_71563369_3	chr17	-	1296	4	NNC	ENSMUSG00000024053.12	novel	3883	8	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	6.59966329107444	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTCCTTTTCTGTATTT	NA	False	NA	-7	True	AATAAA	-15	NA	71563369	71559168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_71560089_71562113_71562243_71562974_71563008_71563155
ENSMUSG00000024063.14_73225300_73246570_1	chr17	+	697	3	FSM	ENSMUSG00000024063.14	ENSMUST00000024857.14	3069	3	0	2372	0	230	multi-exon	FALSE	canonical	2	4	junction_1	4	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCGAGTCGGTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	73225299	73246570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_73225574_73228182_73228286_73246250
ENSMUSG00000024067.15_74606479_74623389_1	chr17	-	780	5	FSM	ENSMUSG00000024067.15	ENSMUST00000112571.5	622	5	14	-172	0	0	multi-exon	FALSE	canonical	3	140	junction_4	1057.76707620345	13473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTATAGTTGTTGTA	NA	False	NA	-20	True	AATAAA	-14	NA	74623389	74606478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038_74623112_74623214
ENSMUSG00000024068.9_74681138_74695481_1	chr17	+	592	6	ISM	ENSMUSG00000024068.9	ENSMUST00000224711.2	2066	17	35156	0	6847	0	3prime_fragment	FALSE	canonical	3	229	junction_4	9.3680307429043	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTCAAGGCCTTCTT	NA	False	NA	16	True	AATAAA	-20	NA	74681137	74695481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_74681198_74682077_74682121_74684035_74684116_74688964_74689036_74694028_74694070_74695184
ENSMUSG00000024069.15_74702624_74730662_1	chr17	+	1573	14	FSM	ENSMUSG00000024069.15	ENSMUST00000024870.9	2148	14	21	554	0	0	multi-exon	FALSE	canonical	3	152	junction_5	21.3572043468894	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTGTGGCAGTGAGGT	NA	False	NA	14	True	TATAAA	-17	NA	74702623	74730662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_74702664_74708906_74708994_74710998_74711084_74712679_74712723_74714215_74714282_74715840_74715922_74716347_74716384_74717328_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
ENSMUSG00000024069.15_74702624_74731004_1	chr17	+	1915	14	FSM	ENSMUSG00000024069.15	ENSMUST00000024870.9	2148	14	21	212	0	0	multi-exon	FALSE	canonical	3	152	junction_5	21.3572043468894	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGAGGTATATTCTACT	NA	False	NA	9	True	AATAAA	-22	NA	74702623	74731004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_74702664_74708906_74708994_74710998_74711084_74712679_74712723_74714215_74714282_74715840_74715922_74716347_74716384_74717328_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
ENSMUSG00000024079.5_79161934_79189977_1	chr17	-	2347	16	FSM	ENSMUSG00000024079.5	ENSMUST00000024884.5	4313	16	25	1941	0	849	multi-exon	FALSE	canonical	3	40	junction_8	9.77525219907679	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCAATAGGGTTTTTTT	NA	False	NA	-3	True	ATTAAA	-23	NA	79189977	79161933	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_79162691_79162771_79162829_79163995_79164098_79165929_79166062_79171267_79171449_79172730_79172851_79173743_79173867_79176185_79176237_79176904_79176940_79177915_79177965_79178082_79178163_79178577_79178699_79181371_79181509_79183610_79183732_79185570_79185703_79189828
ENSMUSG00000024081.10_79221746_79227735_1	chr17	-	684	5	NNC	ENSMUSG00000024081.10	novel	4070	16	NA	NA	2535	4689	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4642	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCACCATCACCAGTTAGG	NA	False	NA	NA	False	NA	NA	NA	79227735	79221745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_79221854_79225785_79225902_79226484_79226530_79227187_79227273_79227405
ENSMUSG00000024081.10_79223946_79227603_1	chr17	-	621	5	NIC	ENSMUSG00000024081.10	novel	4070	16	NA	NA	2667	2489	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCAACCCGACTGCGCAAG	NA	False	NA	NA	False	AAGAAA	-27	NA	79227603	79223945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_79224123_79225785_79225902_79226484_79226530_79227187_79227273_79227405
ENSMUSG00000024081.10_79224100_79227735_1	chr17	-	599	5	NIC	ENSMUSG00000024081.10	novel	4070	16	NA	NA	2535	2335	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	4731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGCGGCTCGGCGACCCGG	NA	False	NA	NA	False	NA	NA	NA	79227735	79224099	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_79224123_79225785_79225902_79226484_79226530_79227187_79227273_79227405
ENSMUSG00000024081.10_79225784_79227735_1	chr17	-	533	3	NIC	ENSMUSG00000024081.10	novel	4070	16	NA	NA	2535	651	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATTAACAACATGGATGGA	NA	False	NA	NA	False	TTTAAA	-40	NA	79227735	79225783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_79225902_79227187_79227273_79227405
ENSMUSG00000024081.10_79227274_79244479_1	chr17	-	3215	16	FSM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	16	839	-9	0	multi-exon	FALSE	canonical	3	465	junction_13	57.736720454914	1557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTAGTTTTTGCTAGTCA	NA	False	NA	-6	True	AATAAA	-16	NA	79244479	79227273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
ENSMUSG00000024082.6_79244565_79245578_1	chr17	+	725	2	FSM	ENSMUSG00000024082.6	ENSMUST00000233138.2	514	2	-23	-188	0	188	multi-exon	FALSE	canonical	3	397	junction_1	0	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGGATTTAGTTTTGGG	NA	False	NA	NA	False	AAGAAA	-34	NA	79244564	79245578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_79244631_79244919
ENSMUSG00000024082.6_79244565_79254602_1	chr17	+	1377	10	NNC	ENSMUSG00000024082.6	novel	1749	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_7	144.660863512212	1883	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTCAAACTAGTATCTCT	NA	False	NA	24	True	AATAAA	-33	NA	79244564	79254602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251328_79252369_79252514_79253724_79253899_79254303
ENSMUSG00000024082.6_79244565_79255366_1	chr17	+	1269	10	NNC	ENSMUSG00000024082.6	novel	1749	10	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	142.310909847869	166	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTACCAAATCTGACTTT	NA	False	NA	NA	False	AATAAA	-18	NA	79244564	79255366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724_79253899_79255221
ENSMUSG00000024082.6_79244565_79255366_2	chr17	+	1289	10	NIC	ENSMUSG00000024082.6	novel	1749	10	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	142.310909847869	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTACCAAATCTGACTTT	NA	False	NA	NA	False	AATAAA	-18	NA	79244564	79255366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724_79253899_79255201
ENSMUSG00000024082.6_79244565_79255481_1	chr17	+	1404	10	NIC	ENSMUSG00000024082.6	novel	1749	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	142.310909847869	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAGTTGTCTGTAGAAC	NA	False	NA	NA	False	GATAAA	-19	NA	79244564	79255481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724_79253899_79255201
ENSMUSG00000024083.17_64589868_64638871_1	chr17	-	2832	10	FSM	ENSMUSG00000024083.17	ENSMUST00000172818.8	4740	10	40	1868	11	-1853	multi-exon	FALSE	canonical	3	104	junction_6	24	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAATAATAAAAATACAT	NA	False	NA	NA	False	ACTAAA	-29	NA	64638871	64589867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_64590534_64593995_64594118_64594522_64594638_64596927_64597040_64599833_64600020_64604718_64604905_64615616_64616662_64618165_64618367_64619995_64620114_64638790
ENSMUSG00000024084.9_79359617_79397424_1	chr17	+	1394	7	FSM	ENSMUSG00000024084.9	ENSMUST00000040789.6	2059	7	282	383	0	-226	multi-exon	TRUE	canonical	3	226	junction_1	6.47216261298253	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTTGGATTAAAACTTT	NA	False	NA	NA	False	AATAAA	-20	NA	79359616	79397424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_79359818_79371356_79371504_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
ENSMUSG00000024084.9_79359617_79397650_1	chr17	+	1615	7	NNC	ENSMUSG00000024084.9	novel	2059	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	87.433784469544	653	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGAATTTATTTTCATGT	NA	False	NA	11	True	ATTAAA	-20	NA	79359616	79397650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_79359818_79371356_79371504_79378101_79378381_79384910_79385088_79386895_79386996_79389180_79389293_79397051
ENSMUSG00000024084.9_79359617_79397650_2	chr17	+	1620	7	FSM	ENSMUSG00000024084.9	ENSMUST00000040789.6	2059	7	282	157	0	0	multi-exon	FALSE	canonical	3	226	junction_1	6.47216261298253	795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGAATTTATTTTCATGT	NA	False	NA	11	True	ATTAAA	-20	NA	79359616	79397650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_79359818_79371356_79371504_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
ENSMUSG00000024084.9_79359617_79397814_1	chr17	+	1637	6	FSM	ENSMUSG00000024084.9	ENSMUST00000233916.2	1473	6	0	-164	0	7	multi-exon	FALSE	canonical	3	32	junction_1	82.0351144327842	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTATTGCCTCTTTGTTT	NA	False	NA	5	True	AATATA	-21	NA	79359616	79397814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_79359818_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
ENSMUSG00000024084.9_79359617_79397814_2	chr17	+	1784	7	FSM	ENSMUSG00000024084.9	ENSMUST00000040789.6	2059	7	282	-7	0	7	multi-exon	FALSE	canonical	3	226	junction_1	6.47216261298253	1006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTATTGCCTCTTTGTTT	NA	False	NA	5	True	AATATA	-21	NA	79359616	79397814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_79359818_79371356_79371504_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
ENSMUSG00000024091.10_65887048_65920300_1	chr17	-	1393	6	FSM	ENSMUSG00000024091.10	ENSMUST00000024897.10	3369	6	250	1726	250	367	multi-exon	FALSE	canonical	3	3309	junction_3	105.717737395387	416	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTTGTGTCTGTCATG	3213	False	NA	-5	True	AATAAA	-26	NA	65920300	65887047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_65887843_65889574_65889749_65899285_65899367_65900434_65900539_65901896_65902050_65920214
ENSMUSG00000024095.16_80337266_80369120_1	chr17	-	2124	13	NNC	ENSMUSG00000024095.16	novel	2742	14	NA	NA	444	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	159.429974178843	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTGTTCATCTTCATT	4106	False	NA	NA	False	TATAAA	-15	NA	80369120	80337265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80356036_80356110_80356193_80356297_80357240_80357322_80358056_80358295_80360951_80361071_80369085
ENSMUSG00000024095.16_80337770_80369120_1	chr17	-	1620	13	NNC	ENSMUSG00000024095.16	novel	3009	13	NA	NA	444	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	159.429974178843	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTTGTTGTTAACTTA	4106	False	NA	-4	True	AATAAA	-16	NA	80369120	80337769	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80356036_80356110_80356193_80356297_80357240_80357322_80358056_80358295_80360951_80361071_80369085
ENSMUSG00000024095.16_80337770_80369222_1	chr17	-	1722	13	NNC	ENSMUSG00000024095.16	novel	3009	13	NA	NA	342	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	159.429974178843	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTTGTTGTTAACTTA	4004	False	NA	-4	True	AATAAA	-16	NA	80369222	80337769	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80356036_80356110_80356193_80356297_80357240_80357322_80358056_80358295_80360951_80361071_80369085
ENSMUSG00000024096.18_66156703_66192315_1	chr17	-	2379	10	FSM	ENSMUSG00000024096.18	ENSMUST00000166543.10	3799	10	478	942	-366	122	multi-exon	FALSE	canonical	1	126	junction_9	189.388163682976	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGAGTGGCTTCTTTTT	NA	False	NA	-28	True	NA	NA	NA	66192315	66156702	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66192180
ENSMUSG00000024096.18_66171475_66191806_1	chr17	-	686	3	ISM	ENSMUSG00000024096.18	ENSMUST00000024905.11	3811	10	143	16062	143	212	5prime_fragment	FALSE	canonical	3	383	junction_2	139.5	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGAAAAAGAAAAAGCCAA	NA	False	NA	6	True	NA	NA	NA	66191806	66171474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_66171728_66174526_66174826_66191672
ENSMUSG00000024096.18_66171568_66175109_1	chr17	-	625	3	FSM	ENSMUSG00000024096.18	ENSMUST00000233399.2	443	3	-63	-119	-63	119	multi-exon	FALSE	canonical	0	0	junction_2	331	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCATAAAGAAGAAAAGCACA	NA	False	NA	-87	True	AAAAAG	-45	NA	66175109	66171567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_66171728_66174526_66174826_66174943
ENSMUSG00000024096.18_66171568_66191398_1	chr17	-	641	3	NIC	ENSMUSG00000024096.18	novel	481	2	NA	NA	0	119	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	319.5	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCATAAAGAAGAAAAGCACA	NA	False	NA	-87	True	AAAAAG	-45	NA	66191398	66171567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_66171728_66174526_66174826_66191216
ENSMUSG00000024096.18_66171568_66191755_1	chr17	-	542	3	ISM	ENSMUSG00000024096.18	ENSMUST00000024905.11	3811	10	194	16155	194	119	5prime_fragment	FALSE	canonical	3	383	junction_2	139.5	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCATAAAGAAGAAAAGCACA	NA	False	NA	-87	True	AAAAAG	-45	NA	66191755	66171567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_66171728_66174526_66174826_66191672
ENSMUSG00000024097.12_80508739_80514619_1	chr17	-	934	8	FSM	ENSMUSG00000024097.12	ENSMUST00000235069.2	1040	8	113	-7	113	0	multi-exon	FALSE	canonical	3	1059	junction_3	412.241508371597	1660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514619	80508738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUSG00000024097.12_80508739_80514619_2	chr17	-	943	8	FSM	ENSMUSG00000024097.12	ENSMUST00000063417.11	2288	8	115	1230	113	0	multi-exon	FALSE	canonical	3	759	junction_3	505.274425335341	1652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514619	80508738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUSG00000024097.12_80508739_80514734_1	chr17	-	1047	7	NNC	ENSMUSG00000024097.12	novel	1040	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	824.318792835771	9956	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514734	80508738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_80509032_80510085_80510174_80511559_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUSG00000024097.12_80508739_80514734_2	chr17	-	1058	8	FSM	ENSMUSG00000024097.12	ENSMUST00000063417.11	2288	8	0	1230	0	0	multi-exon	FALSE	canonical	3	759	junction_3	505.274425335341	12086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514734	80508738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUSG00000024097.12_80508739_80514734_3	chr17	-	1013	7	NIC	ENSMUSG00000024097.12	novel	1040	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	135	junction_1	782.029553292088	1741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514734	80508738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_80509032_80510119_80510174_80511559_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUSG00000024099.16_66386436_66408504_1	chr17	-	844	8	FSM	ENSMUSG00000024099.16	ENSMUST00000143987.9	1697	8	50	803	0	0	multi-exon	FALSE	canonical	3	4006	junction_3	144.496027768297	30588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAAGCTTTATTCGGTTT	5502	False	NA	-11	True	AATAAA	-15	NA	66408504	66386435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66408409
ENSMUSG00000024099.16_66386436_66408504_2	chr17	-	839	8	NNC	ENSMUSG00000024099.16	novel	927	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1458.2637145676	29678	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAAGCTTTATTCGGTTT	5502	False	NA	-11	True	AATAAA	-15	NA	66408504	66386435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396484_66398858_66398925_66408409
ENSMUSG00000024101.16_66418640_66426443_1	chr17	+	1750	11	FSM	ENSMUSG00000024101.16	ENSMUST00000072383.14	2905	11	100	1055	0	1	multi-exon	FALSE	canonical	3	38	junction_1	29.1082462542833	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGGGAGCTGTCCTTTTT	NA	False	NA	25	True	AATAAA	-33	NA	66418639	66426443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_66418645_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
ENSMUSG00000024104.12_116235994_116239626_1	chr6	+	733	3	ISM	ENSMUSG00000024104.12	ENSMUST00000203802.3	4946	28	50827	0	2477	0	3prime_fragment	FALSE	canonical	3	377	junction_2	18.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGGTTTGTTCTTACT	9020	False	NA	10	True	AATAAA	-13	NA	116235993	116239626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_116236218_116237451_116237630_116239295
ENSMUSG00000024118.15_24434213_24439764_2	chr17	-	1981	10	FSM	ENSMUSG00000024118.15	ENSMUST00000024930.8	2166	10	0	185	0	0	multi-exon	FALSE	canonical	3	183	junction_7	23.2426810463471	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGGCTTGACGGTTAA	3337	False	NA	0	True	AATAAA	-21	NA	24439764	24434212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439108_24439225_24439285_24439490_24439590_24439664
ENSMUSG00000024118.15_24434520_24439764_1	chr17	-	1674	10	FSM	ENSMUSG00000024118.15	ENSMUST00000024930.8	2166	10	0	492	0	0	multi-exon	FALSE	canonical	3	183	junction_7	23.2426810463471	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTTGGTTTCTTGTTTC	3337	False	NA	-7	True	TTTAAA	-28	NA	24439764	24434519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439108_24439225_24439285_24439490_24439590_24439664
ENSMUSG00000024121.14_24382840_24384015_1	chr17	-	950	3	NNC	ENSMUSG00000024121.14	novel	1183	3	NA	NA	1988	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_2	1544	1284	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGCTTGTGTTCTGGCGC	NA	False	NA	NA	False	AATAAA	-15	NA	24384015	24382839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_24383583_24383672_24383857_24383992
ENSMUSG00000024121.14_24382840_24387853_1	chr17	-	1092	3	FSM	ENSMUSG00000024121.14	ENSMUST00000156061.2	607	3	187	-672	187	0	multi-exon	FALSE	canonical	3	6	junction_2	1543.5	1296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGCTTGTGTTCTGGCGC	NA	False	NA	NA	False	AATAAA	-15	NA	24387853	24382839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24383583_24383672_24383857_24387688
ENSMUSG00000024121.14_24382840_24388435_1	chr17	-	1174	3	NNC	ENSMUSG00000024121.14	novel	1183	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1546.5	23049	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGCTTGTGTTCTGGCGC	NA	False	NA	NA	False	AATAAA	-15	NA	24388435	24382839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_24383583_24383672_24383848_24388179
ENSMUSG00000024121.14_24383127_24388435_1	chr17	-	887	3	NNC	ENSMUSG00000024121.14	novel	1183	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1546.5	1786	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTAGAGTGCTCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	24388435	24383126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_24383583_24383672_24383848_24388179
ENSMUSG00000024127.16_85385487_85397684_1	chr17	-	1114	5	ISM	ENSMUSG00000024127.16	ENSMUST00000072406.5	3255	14	-35	14589	-15	0	5prime_fragment	FALSE	canonical	3	23	junction_4	71.3249605678124	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTTAAAAAAAAAATGTG	NA	False	NA	NA	False	AATAAA	-38	NA	85397684	85385486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85397533
ENSMUSG00000024132.7_24645657_24658294_1	chr17	+	1205	6	NIC	ENSMUSG00000024132.7	novel	1137	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	503	junction_1	25.350345165303	4670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTTAGCTCTTGTGTTC	4882	False	NA	11	True	TATAAA	-24	NA	24645656	24658294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_24645914_24652106_24652235_24655151_24655299_24656193_24656316_24656405_24656585_24657922
ENSMUSG00000024142.16_24694276_24698052_1	chr17	-	1589	9	FSM	ENSMUSG00000024142.16	ENSMUST00000179163.3	3340	9	0	1751	0	0	multi-exon	FALSE	canonical	3	12	junction_8	23.0813777751676	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATGTTGCTCGGGAAGC	9587	False	NA	NA	False	AATAAA	-14	NA	24698052	24694275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293_24697433_24697985
ENSMUSG00000024143.16_87304684_87332523_1	chr17	+	1061	6	NNC	ENSMUSG00000024143.16	novel	4151	5	NA	NA	2661	25026	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2629	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCCGTGCGGCCGACCC	NA	False	NA	NA	False	NA	NA	NA	87304683	87332523	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_87304996_87316230_87316340_87327828_87327946_87329286_87329379_87331092_87331342_87332341
ENSMUSG00000024143.16_87304684_87332834_1	chr17	+	978	6	NNC	ENSMUSG00000024143.16	novel	4151	5	NA	NA	2661	25337	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3210	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGGGAACTCACAAGCGCA	NA	False	NA	NA	False	NA	NA	NA	87304683	87332834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_87304996_87316230_87316340_87327828_87327946_87329286_87329369_87331092_87331342_87332725
ENSMUSG00000024143.16_87304684_87332834_2	chr17	+	981	6	NNC	ENSMUSG00000024143.16	novel	4151	5	NA	NA	2661	25337	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3147	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGGGAACTCACAAGCGCA	NA	False	NA	NA	False	NA	NA	NA	87304683	87332834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_87304996_87316237_87316340_87327828_87327946_87329286_87329379_87331092_87331342_87332725
ENSMUSG00000024143.16_87304684_87332834_3	chr17	+	879	5	NIC	ENSMUSG00000024143.16	novel	4151	5	NA	NA	2661	25337	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	266	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGGGAACTCACAAGCGCA	NA	False	NA	NA	False	NA	NA	NA	87304683	87332834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_87304996_87327828_87327946_87329286_87329379_87331092_87331342_87332725
ENSMUSG00000024143.16_87304684_87332834_4	chr17	+	896	5	NIC	ENSMUSG00000024143.16	novel	4151	5	NA	NA	2661	25337	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	271	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGGGAACTCACAAGCGCA	NA	False	NA	NA	False	NA	NA	NA	87304683	87332834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_87304996_87316230_87316340_87327828_87327946_87331092_87331342_87332725
ENSMUSG00000024143.16_87304684_87332834_5	chr17	+	804	6	NNC	ENSMUSG00000024143.16	novel	4151	5	NA	NA	2661	25337	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	131	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGGGAACTCACAAGCGCA	NA	False	NA	NA	False	NA	NA	NA	87304683	87332834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_87304996_87316230_87316340_87327828_87327946_87329286_87329379_87331276_87331342_87332725
ENSMUSG00000024146.10_87332978_87342730_1	chr17	+	676	5	FSM	ENSMUSG00000024146.10	ENSMUST00000024959.10	1184	5	0	508	0	-170	multi-exon	FALSE	canonical	3	592	junction_4	35.4427355039083	2993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGTGTTCCTGACTTCTG	NA	False	NA	13	True	AATGAA	-1	NA	87332977	87342730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_87333104_87335126_87335193_87338435_87338491_87341683_87341788_87342405
ENSMUSG00000024146.10_87332978_87342900_1	chr17	+	846	5	FSM	ENSMUSG00000024146.10	ENSMUST00000024959.10	1184	5	0	338	0	0	multi-exon	FALSE	canonical	3	592	junction_4	35.4427355039083	3383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGAATGAGCAGCACCTTA	NA	False	NA	NA	False	NA	NA	NA	87332977	87342900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_87333104_87335126_87335193_87338435_87338491_87341683_87341788_87342405
ENSMUSG00000024150.13_87562086_87573308_1	chr17	-	1768	4	FSM	ENSMUSG00000024150.13	ENSMUST00000024963.11	2038	4	55	215	0	0	multi-exon	FALSE	canonical	3	165	junction_3	69.8108555710038	984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573308	87562085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87573262
ENSMUSG00000024150.13_87562086_87573363_1	chr17	-	1912	5	NNC	ENSMUSG00000024150.13	novel	813	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	141.467973407411	547	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573363	87562085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_87563486_87564574_87564735_87565355_87565518_87566177_87566310_87573305
ENSMUSG00000024150.13_87562086_87573363_2	chr17	-	1819	4	NNC	ENSMUSG00000024150.13	novel	2038	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	122.284731489894	885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573363	87562085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_87563478_87564570_87564735_87565355_87565518_87573262
ENSMUSG00000024150.13_87562086_87573363_3	chr17	-	1775	4	NNC	ENSMUSG00000024150.13	novel	2038	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	147.196769288218	483	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573363	87562085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_87563486_87564574_87564735_87565355_87565518_87573310
ENSMUSG00000024150.13_87562086_87573418_1	chr17	-	1878	4	FSM	ENSMUSG00000024150.13	ENSMUST00000024963.11	2038	4	-55	215	-55	0	multi-exon	FALSE	canonical	3	165	junction_3	69.8108555710038	1041	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573418	87562085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87573262
ENSMUSG00000024151.14_88026160_88031141_1	chr17	+	881	4	ISM	ENSMUSG00000024151.14	ENSMUST00000024967.14	3283	16	46402	0	22191	0	3prime_fragment	FALSE	canonical	3	1932	junction_3	24.3082062046727	2265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	NA	False	NA	19	True	AATAAA	-16	NA	88026159	88031141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_88026234_88026715_88026964_88028310_88028487_88030758
ENSMUSG00000024158.18_25069074_25083424_1	chr17	+	1121	9	NNC	ENSMUSG00000024158.18	novel	861	8	NA	NA	-390	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	121.179360866445	820	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTTATGGACTCTTT	NA	False	NA	11	True	AAAAAG	-24	NA	25069073	25083424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_25069183_25071704_25071881_25072605_25072671_25075611_25075730_25076489_25076599_25079919_25080024_25080286_25080389_25082650_25082731_25083166
ENSMUSG00000024158.18_25069464_25083424_1	chr17	+	1185	9	NNC	ENSMUSG00000024158.18	novel	1191	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	128.445939503746	1671	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTTATGGACTCTTT	NA	False	NA	11	True	AAAAAG	-24	NA	25069463	25083424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_25069643_25071704_25071881_25072605_25072671_25075611_25075730_25076489_25076599_25079919_25080024_25080286_25080389_25082656_25082731_25083166
ENSMUSG00000024160.17_25105676_25111123_1	chr17	+	1577	7	NNC	ENSMUSG00000024160.17	novel	1641	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	74.8852826365472	379	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTGTCTATTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	25105675	25111123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_25105735_25106753_25106892_25109261_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
ENSMUSG00000024160.17_25105733_25111123_1	chr17	+	1870	7	FSM	ENSMUSG00000024160.17	ENSMUST00000120943.8	1949	7	79	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	56.1921307262463	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTGTCTATTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	25105732	25111123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25106080_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
ENSMUSG00000024163.18_25114109_25115263_1	chr17	-	875	2	NNC	ENSMUSG00000024163.18	novel	7278	42	NA	NA	3428	2371	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	330	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGAGCTCTCCCGTTCCG	662	False	NA	NA	False	NA	NA	NA	25115263	25114108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_25114463_25114742
ENSMUSG00000024163.18_25114109_25115263_2	chr17	-	894	3	NNC	ENSMUSG00000024163.18	novel	7278	42	NA	NA	3428	2371	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4357	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGAGCTCTCCCGTTCCG	662	False	NA	NA	False	NA	NA	NA	25115263	25114108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_25114463_25114635_25114679_25114766
ENSMUSG00000024163.18_25114109_25115263_3	chr17	-	856	2	NIC	ENSMUSG00000024163.18	novel	7278	42	NA	NA	3428	2371	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	129	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGAGCTCTCCCGTTCCG	662	False	NA	NA	False	NA	NA	NA	25115263	25114108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_25114463_25114761
ENSMUSG00000024163.18_25114109_25115263_4	chr17	-	890	2	NNC	ENSMUSG00000024163.18	novel	7278	42	NA	NA	3428	2371	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2374	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGAGCTCTCCCGTTCCG	662	False	NA	NA	False	NA	NA	NA	25115263	25114108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_25114463_25114727
ENSMUSG00000024163.18_25115479_25116476_1	chr17	-	758	4	NIC	ENSMUSG00000024163.18	novel	7278	42	NA	NA	2215	1001	intron_retention	FALSE	non_canonical	0	0	junction_1	0	372	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGCGGGCCAAGCGGCAA	NA	False	NA	NA	False	NA	NA	NA	25116476	25115478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_25115733_25115825_25115928_25116001_25116115_25116187
ENSMUSG00000024163.18_25115479_25116476_2	chr17	-	690	5	NIC	ENSMUSG00000024163.18	novel	7278	42	NA	NA	2215	1001	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2328	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGCGGGCCAAGCGGCAA	NA	False	NA	NA	False	NA	NA	NA	25116476	25115478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_25115534_25115601_25115733_25115825_25115928_25116001_25116115_25116187
ENSMUSG00000024163.18_25115479_25116476_3	chr17	-	680	5	NNC	ENSMUSG00000024163.18	novel	7278	42	NA	NA	2215	1001	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	775	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGCGGGCCAAGCGGCAA	NA	False	NA	NA	False	NA	NA	NA	25116476	25115478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_25115534_25115601_25115733_25115825_25115928_25116011_25116115_25116187
ENSMUSG00000024163.18_25115479_25116476_4	chr17	-	681	5	NNC	ENSMUSG00000024163.18	novel	7278	42	NA	NA	2215	1001	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	869	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGCGGGCCAAGCGGCAA	NA	False	NA	NA	False	NA	NA	NA	25116476	25115478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_25115534_25115601_25115733_25115825_25115919_25116001_25116115_25116187
ENSMUSG00000024163.18_25115479_25116476_5	chr17	-	684	5	NNC	ENSMUSG00000024163.18	novel	7278	42	NA	NA	2215	1001	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1315	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGCGGGCCAAGCGGCAA	NA	False	NA	NA	False	NA	NA	NA	25116476	25115478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_25115534_25115601_25115727_25115825_25115928_25116001_25116115_25116187
ENSMUSG00000024163.18_25115497_25116476_1	chr17	-	740	4	NIC	ENSMUSG00000024163.18	novel	7278	42	NA	NA	2215	983	intron_retention	FALSE	non_canonical	0	0	junction_1	0	371	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATCATGGCGGCGGATG	NA	False	NA	NA	False	NA	NA	NA	25116476	25115496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_25115733_25115825_25115928_25116001_25116115_25116187
ENSMUSG00000024165.10_25162442_25179621_1	chr17	-	1632	5	FSM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	42	998	-2	972	multi-exon	FALSE	canonical	3	1697	junction_3	70.6872513258225	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCTTAGAAAAGTGCTACTC	4815	False	NA	-7	True	TATAAA	-20	NA	25179621	25162441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
ENSMUSG00000024165.10_25163414_25179621_1	chr17	-	660	5	FSM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	42	1970	-2	0	multi-exon	FALSE	canonical	3	1697	junction_3	70.6872513258225	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGTGTTTCCTTTAACTC	4815	False	NA	NA	False	NA	NA	NA	25179621	25163413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
ENSMUSG00000024174.10_56005347_56019607_1	chr17	-	628	6	ISM	ENSMUSG00000024174.10	ENSMUST00000233557.2	663	7	0	3174	0	-1253	5prime_fragment	TRUE	canonical	1	4	junction_4	7.56306816047562	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTCAGGCATCAATTAT	NA	False	NA	NA	False	ATTAAA	-23	NA	56019607	56005346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_56005588_56006991_56007107_56013105_56013153_56015997_56016087_56017838_56017907_56019539
ENSMUSG00000024177.10_26310710_26314447_1	chr17	-	1004	4	NIC	ENSMUSG00000024177.10	novel	926	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	304	junction_1	22.7596133534821	2845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTCTACTTACTAGTTC	NA	False	NA	-2	True	ATTAAA	-20	NA	26314447	26310709	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_26311127_26312590_26312935_26313110_26313245_26314338
ENSMUSG00000024177.10_26310710_26314447_2	chr17	-	875	5	FSM	ENSMUSG00000024177.10	ENSMUST00000025007.7	1006	5	129	2	0	0	multi-exon	FALSE	canonical	3	296	junction_2	23.847169643377	3213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTCTACTTACTAGTTC	NA	False	NA	-2	True	ATTAAA	-20	NA	26314447	26310709	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26311127_26312590_26312704_26312832_26312935_26313110_26313245_26314338
ENSMUSG00000024177.10_26310710_26314447_3	chr17	-	773	4	NIC	ENSMUSG00000024177.10	novel	926	6	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	1	6	junction_2	144.144217905387	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTCTACTTACTAGTTC	NA	False	NA	-2	True	ATTAAA	-20	NA	26314447	26310709	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_26311127_26312590_26312704_26313110_26313245_26314338
ENSMUSG00000024181.10_26342518_26345587_1	chr17	+	1034	5	NIC	ENSMUSG00000024181.10	novel	1068	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_2	597.959603568669	5117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342517	26345587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_26342824_26343529_26343693_26344230_26344366_26344451_26344539_26345244
ENSMUSG00000024182.17_26412933_26414785_1	chr17	+	1025	2	ISM	ENSMUSG00000024182.18	ENSMUST00000074370.11	3777	11	55271	0	5806	0	3prime_fragment	FALSE	canonical	3	384	junction_1	0	948	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGATATGTGATATACTAT	NA	False	NA	11	True	AATAAA	-19	NA	26412932	26414785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_26413081_26413908
ENSMUSG00000024186.16_26418157_26426760_1	chr17	+	989	6	NIC	ENSMUSG00000024186.16	novel	1331	6	NA	NA	-3768	980	intron_retention	FALSE	non_canonical	0	0	junction_1	0	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCGATGGAGCTTCAGCTT	3299	False	NA	NA	False	NA	NA	NA	26418156	26426760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_26418504_26418586_26418651_26418725_26418803_26418988_26419073_26419164_26419345_26426523
ENSMUSG00000024186.16_26418157_26426760_2	chr17	+	1088	7	NNC	ENSMUSG00000024186.16	novel	1331	6	NA	NA	-3768	980	intron_retention	FALSE	non_canonical	0	0	junction_1	0	104	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCGATGGAGCTTCAGCTT	3299	False	NA	NA	False	NA	NA	NA	26418156	26426760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_26418504_26418586_26418651_26418725_26418803_26418988_26419073_26419164_26419345_26425658_26425758_26426523
ENSMUSG00000024188.17_26471925_26477148_1	chr17	+	556	4	ISM	ENSMUSG00000024188.17	ENSMUST00000148894.2	1672	10	-48	22549	0	-8219	5prime_fragment	FALSE	canonical	3	95	junction_2	191.701735922123	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTGCTGTATTGAGTTT	NA	False	NA	NA	False	AATACA	-18	NA	26471924	26477148	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_26472066_26472947_26473019_26474004_26474100_26476899
ENSMUSG00000024188.17_26471925_26486478_1	chr17	+	736	5	ISM	ENSMUSG00000024188.17	ENSMUST00000025023.15	1700	9	55	13215	0	1111	5prime_fragment	FALSE	canonical	3	393	junction_1	77.0292152368178	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCTCTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	26471924	26486478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188
ENSMUSG00000024188.17_26471925_26499694_1	chr17	+	1713	9	NNC	ENSMUSG00000024188.17	novel	1672	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	243.258575131484	858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATGTTTACATTAGTGT	NA	False	NA	14	True	ATTAAA	-26	NA	26471924	26499694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_26472066_26472947_26473019_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498908
ENSMUSG00000024188.17_26471925_26499694_2	chr17	+	1648	8	NNC	ENSMUSG00000024188.17	novel	4934	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	203.715287515068	929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATGTTTACATTAGTGT	NA	False	NA	14	True	ATTAAA	-26	NA	26471924	26499694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496641_26498934
ENSMUSG00000024188.17_26471925_26500943_1	chr17	+	1399	10	FSM	ENSMUSG00000024188.17	ENSMUST00000114976.9	4934	10	0	3535	0	1	multi-exon	FALSE	canonical	3	213	junction_9	132.110877487879	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGTGTTGGGGTATCTG	NA	False	NA	11	True	AATAAA	-20	NA	26471924	26500943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934_26499103_26500598
ENSMUSG00000024194.17_27156950_27158261_1	chr17	-	715	4	FSM	ENSMUSG00000024194.17	ENSMUST00000236906.2	737	4	177	-155	-82	0	multi-exon	FALSE	canonical	3	17	junction_2	443.157609284402	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9534	False	NA	-21	True	AATAAA	-14	NA	27158261	27156949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27157151_27157391_27157442_27157700_27157761_27157857
ENSMUSG00000024194.17_27156950_27158442_1	chr17	-	668	7	NIC	ENSMUSG00000024194.17	novel	741	7	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	363.746554011932	3301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9353	False	NA	-21	True	AATAAA	-14	NA	27158442	27156949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_27157151_27157391_27157442_27157545_27157624_27157700_27157761_27157857_27158067_27158290_27158343_27158424
ENSMUSG00000024194.17_27156950_27158442_10	chr17	-	745	6	NIC	ENSMUSG00000024194.17	novel	741	7	NA	NA	-4	0	intron_retention	FALSE	canonical	3	300	junction_5	273.070979783645	1373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9353	False	NA	-21	True	AATAAA	-14	NA	27158442	27156949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857_27158067_27158290_27158343_27158424
ENSMUSG00000024194.17_27156950_27158442_11	chr17	-	688	5	NIC	ENSMUSG00000024194.17	novel	662	6	NA	NA	-4	0	intron_retention	FALSE	canonical	3	227	junction_4	300.390579079971	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9353	False	NA	-21	True	AATAAA	-14	NA	27158442	27156949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_27157151_27157391_27157592_27157700_27157761_27157857_27158067_27158424
ENSMUSG00000024194.17_27156950_27158442_2	chr17	-	739	7	NIC	ENSMUSG00000024194.17	novel	937	6	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_5	370.133947225716	4824	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9353	False	NA	-21	True	AATAAA	-14	NA	27158442	27156949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158170_27158290_27158343_27158424
ENSMUSG00000024194.17_27156950_27158442_3	chr17	-	693	5	NIC	ENSMUSG00000024194.17	novel	662	6	NA	NA	-4	0	intron_retention	FALSE	canonical	3	227	junction_4	311.485954739536	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9353	False	NA	-21	True	AATAAA	-14	NA	27158442	27156949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857_27158067_27158424
ENSMUSG00000024194.17_27156950_27158442_4	chr17	-	590	6	NIC	ENSMUSG00000024194.17	novel	741	7	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	368.541449500595	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9353	False	NA	-21	True	AATAAA	-14	NA	27158442	27156949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_27157151_27157391_27157442_27157700_27157761_27157857_27158067_27158290_27158343_27158424
ENSMUSG00000024194.17_27156950_27158442_5	chr17	-	969	5	NIC	ENSMUSG00000024194.17	novel	937	6	NA	NA	-4	0	intron_retention	FALSE	canonical	3	300	junction_4	279.974440797727	1865	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9353	False	NA	-21	True	AATAAA	-14	NA	27158442	27156949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857_27158343_27158424
ENSMUSG00000024194.17_27156950_27158442_6	chr17	-	631	7	NNC	ENSMUSG00000024194.17	novel	741	7	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	117	junction_4	311.411838781594	5348	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9353	False	NA	-21	True	AATAAA	-14	NA	27158442	27156949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157756_27157857_27158067_27158290_27158343_27158424
ENSMUSG00000024194.17_27156950_27158442_7	chr17	-	849	5	NIC	ENSMUSG00000024194.17	novel	741	7	NA	NA	-4	0	intron_retention	FALSE	canonical	3	300	junction_4	285.772090134779	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9353	False	NA	-21	True	AATAAA	-14	NA	27158442	27156949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_27157151_27157391_27157761_27157857_27158067_27158290_27158343_27158424
ENSMUSG00000024194.17_27156950_27158442_8	chr17	-	740	6	NIC	ENSMUSG00000024194.17	novel	741	7	NA	NA	-4	0	intron_retention	FALSE	canonical	3	300	junction_5	259.797613537923	1068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9353	False	NA	-21	True	AATAAA	-14	NA	27158442	27156949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_27157151_27157391_27157592_27157700_27157761_27157857_27158067_27158290_27158343_27158424
ENSMUSG00000024194.17_27156950_27158442_9	chr17	-	616	6	NIC	ENSMUSG00000024194.17	novel	719	6	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	408.534258049432	785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9353	False	NA	-21	True	AATAAA	-14	NA	27158442	27156949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_27157151_27157391_27157442_27157545_27157624_27157700_27157761_27157857_27158067_27158424
ENSMUSG00000024197.11_56585966_56597511_1	chr17	-	2155	8	FSM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	0	1490	0	-1490	multi-exon	TRUE	canonical	3	548	junction_7	40.8821102534533	1570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCAAGTGGATGGTGTATA	NA	False	NA	-9	True	AATAAA	-17	NA	56597511	56585965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793_56594877_56597453
ENSMUSG00000024197.11_56586498_56597511_1	chr17	-	1623	8	FSM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	0	2022	0	-2022	multi-exon	FALSE	canonical	3	548	junction_7	40.8821102534533	1285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGTAATGAATAGTGATAGC	NA	False	NA	NA	False	NA	NA	NA	56597511	56586497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793_56594877_56597453
ENSMUSG00000024197.11_56586498_56597511_2	chr17	-	1618	8	NNC	ENSMUSG00000024197.11	novel	3645	8	NA	NA	0	-2022	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	220.142439973648	1252	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGTAATGAATAGTGATAGC	NA	False	NA	NA	False	NA	NA	NA	56597511	56586497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593642_56594793_56594877_56597453
ENSMUSG00000024206.16_57111138_57137939_1	chr17	-	498	4	ISM	ENSMUSG00000024206.16	ENSMUST00000233643.2	4141	5	0	4229	0	-4229	5prime_fragment	FALSE	canonical	3	258	junction_2	15.2970585407784	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATAGGCCCCTGAGAGTG	NA	False	NA	-1	True	AATAAA	-14	NA	57137939	57111137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_57111397_57112357_57112448_57115233_57115326_57137882
ENSMUSG00000024209.10_57184231_57195904_1	chr17	+	2296	12	ISM	ENSMUSG00000024209.10	ENSMUST00000025048.7	2677	14	1754	0	1728	0	3prime_fragment	TRUE	canonical	3	15	junction_6	15.5260378474249	697	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCTCGCACCCCGAGGT	NA	False	NA	16	True	ATTAAA	-16	NA	57184230	57195904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57189987_57190315_57190498_57190626_57190861_57191750_57191969_57192083_57192224_57193440_57193688_57195636
ENSMUSG00000024209.10_57190985_57195906_1	chr17	+	916	5	NNC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	8482	2	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	26.0192236625154	584	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTCGCACCCCGAGGTAA	NA	False	NA	18	True	ATTAAA	-18	NA	57190984	57195906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_57191026_57191750_57191969_57192083_57192224_57193440_57193688_57195636
ENSMUSG00000024209.10_57190985_57195906_2	chr17	+	698	4	NNC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	8482	2	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	29.6797723860694	553	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTCGCACCCCGAGGTAA	NA	False	NA	18	True	ATTAAA	-18	NA	57190984	57195906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_57191026_57192083_57192224_57193440_57193688_57195636
ENSMUSG00000024217.11_28059129_28070942_1	chr17	+	729	6	NNC	ENSMUSG00000024217.11	novel	882	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_1	811.755529700907	17951	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGTCCCTGTCCCTTGCA	NA	False	NA	21	True	AATAAA	-23	NA	28059128	28070942	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_28059180_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
ENSMUSG00000024218.14_28120100_28126712_1	chr17	-	1215	6	NNC	ENSMUSG00000024218.14	novel	3457	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	54	junction_1	40	1363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACAGGGTTTCTCTGTGTTG	NA	False	NA	-7	True	AATAAA	-21	NA	28126712	28120099	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_28120278_28120298_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474
ENSMUSG00000024228.13_59309052_59320367_1	chr17	-	1674	7	FSM	ENSMUSG00000024228.13	ENSMUST00000025065.12	4113	7	0	2439	0	-1946	multi-exon	FALSE	canonical	3	48	junction_4	5.17740818900302	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTAAGTGTTCTTTCTA	NA	False	NA	NA	False	CATAAA	-19	NA	59320367	59309051	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_59309287_59310323_59310524_59313498_59313613_59314618_59314787_59316849_59317440_59318037_59318250_59320212
ENSMUSG00000024231.16_3382988_3435411_1	chr18	+	2881	21	NIC	ENSMUSG00000024231.16	novel	3727	20	NA	NA	0	26	combination_of_known_junctions	FALSE	canonical	3	200	junction_1	171.970666103263	939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCCTTTTTCTATGATGA	-35	True	NA	98	True	NA	NA	NA	3382987	3435411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_3383173_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
ENSMUSG00000024232.3_3507923_3512757_1	chr18	+	1427	3	FSM	ENSMUSG00000024232.3	ENSMUST00000025075.3	5074	3	0	3647	0	-3647	multi-exon	FALSE	canonical	3	117	junction_2	19.5	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGTGGTGTCTTTCATGA	-8	True	NA	24	True	AATATA	-19	NA	3507922	3512757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_3508286_3511256_3511545_3511981
ENSMUSG00000024234.8_4375603_4396620_1	chr18	+	1930	9	FSM	ENSMUSG00000024234.8	ENSMUST00000025077.7	2651	9	11	710	0	-165	multi-exon	FALSE	canonical	3	181	junction_2	18.3711730708738	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGCAAAAGGCATATTTGA	-1	True	NA	NA	False	ATTAAA	-18	NA	4375602	4396620	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ENSMUSG00000024234.8_4375603_4396785_1	chr18	+	2076	9	FSM	ENSMUSG00000024234.8	ENSMUST00000234422.2	2626	9	7	543	0	0	multi-exon	FALSE	canonical	3	50	junction_2	58.5340445809103	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTAGTATCTATTTTCT	-1	True	NA	18	True	AATAAA	-20	NA	4375602	4396785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_4375779_4379568_4379742_4380672_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ENSMUSG00000024235.12_4348966_4352957_1	chr18	-	479	2	FSM	ENSMUSG00000024235.12	ENSMUST00000172805.2	2048	2	58	1511	0	-1511	multi-exon	FALSE	canonical	3	28	junction_1	0	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTGAGTGCTGTGTGCT	-4	True	NA	NA	False	ATTAAA	-20	NA	4352957	4348965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_4349339_4352851
ENSMUSG00000024240.14_6488893_6490856_1	chr18	-	832	2	FSM	ENSMUSG00000024240.14	ENSMUST00000050542.6	565	2	0	-267	0	267	multi-exon	FALSE	canonical	3	18	junction_1	0	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTTGTCTTTTTGTTTT	-18	True	NA	NA	False	ATTAAA	-16	NA	6490856	6488892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_6489331_6490462
ENSMUSG00000024258.5_31922212_31929759_1	chr18	+	924	3	FSM	ENSMUSG00000024258.5	ENSMUST00000234146.2	706	3	-1	-217	0	5	multi-exon	FALSE	canonical	3	63	junction_2	315.5	915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGTATTTATTTGTTAA	NA	False	NA	26	True	AATAAA	-25	NA	31922211	31929759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_31922298_31924892_31925074_31929102
ENSMUSG00000024260.15_31844387_31856116_1	chr18	+	1349	5	ISM	ENSMUSG00000024260.15	ENSMUST00000025109.8	4015	21	76951	-2	76155	2	3prime_fragment	FALSE	canonical	3	176	junction_3	5.22015325445528	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGCAGTTTGCCTCTTT	NA	False	NA	10	True	AATAAA	-22	NA	31844386	31856116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_+_31844500_31844661_31844788_31848393_31848498_31853709_31853824_31855224
ENSMUSG00000024268.17_25630255_25638125_1	chr18	-	1034	6	ISM	ENSMUSG00000024268.17	ENSMUST00000223704.2	2492	13	248915	18120	-3829	7022	internal_fragment	FALSE	canonical	3	20	junction_1	5.17687164221791	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGTCTGCATCCCACT	NA	False	NA	NA	False	AGTAAA	-15	NA	25638125	25630254	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_-_25630588_25634257_25634408_25635989_25636138_25637195_25637340_25637545_25637626_25637946
ENSMUSG00000024269.12_25271668_25301751_1	chr18	-	1272	7	FSM	ENSMUSG00000024269.12	ENSMUST00000115817.3	4159	7	313	2574	0	-2574	multi-exon	FALSE	canonical	3	238	junction_5	17.5823459438406	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCAGTATCGACTAGTTA	NA	False	NA	-5	True	AATAAA	-21	NA	25301751	25271667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_25272197_25273502_25273664_25274577_25274695_25282170_25282300_25284256_25284345_25291300_25291381_25301583
ENSMUSG00000024271.9_24737020_24771869_1	chr18	+	2769	22	FSM	ENSMUSG00000024271.9	ENSMUST00000234266.2	3466	22	2	695	0	2	multi-exon	FALSE	canonical	3	667	junction_5	86.0279973411599	1771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCTGATTTTGCCTTA	NA	False	NA	92	True	TTTAAA	-12	NA	24737019	24771869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
ENSMUSG00000024273.9_24603926_24610855_1	chr18	+	1042	4	NIC	ENSMUSG00000024273.9	novel	1065	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	89.4886709154976	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAATGGTAGTATTTAATT	359	False	NA	17	True	GATAAA	-14	NA	24603925	24610855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_24604038_24606006_24606207_24608581_24608782_24610325
ENSMUSG00000024277.15_23937077_24025426_1	chr18	+	2502	7	FSM	ENSMUSG00000024277.15	ENSMUST00000025127.5	4026	7	36	1488	0	5	multi-exon	FALSE	canonical	3	115	junction_6	13.0596920161065	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGAAATTTCTTTTTTA	NA	False	NA	NA	False	AATAAA	-23	NA	23937076	24025426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_23937279_23965909_23966038_23986710_23986857_23991000_23991215_24011000_24011141_24016594_24016754_24023913
ENSMUSG00000024283.16_7868850_7902007_1	chr18	+	987	4	ISM	ENSMUSG00000024283.16	ENSMUST00000171486.8	1608	13	-216	24132	0	-3485	5prime_fragment	TRUE	canonical	3	146	junction_1	199.474866141633	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTAATCAAATATGTGC	7	True	NA	NA	False	NA	NA	NA	7868849	7902007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_+_7869092_7869990_7870028_7871548_7871745_7901495
ENSMUSG00000024287.9_9958180_9961317_1	chr18	+	2287	2	FSM	ENSMUSG00000024287.9	ENSMUST00000234805.2	2047	2	0	-240	0	17	multi-exon	FALSE	canonical	3	860	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACTGGGGCACTGGAAG	13	True	NA	NA	False	ATTAAA	-10	NA	9958179	9961317	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_9958247_9959097
ENSMUSG00000024287.9_9958180_9961317_2	chr18	+	1034	4	FSM	ENSMUSG00000024287.9	ENSMUST00000234890.2	891	4	3	-146	0	17	multi-exon	FALSE	canonical	3	775	junction_2	35.5621521658443	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACTGGGGCACTGGAAG	13	True	NA	NA	False	ATTAAA	-10	NA	9958179	9961317	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485
ENSMUSG00000024287.9_9958180_9993725_1	chr18	+	2096	21	FSM	ENSMUSG00000024287.9	ENSMUST00000025137.9	4134	21	274	1764	0	0	multi-exon	FALSE	canonical	0	0	junction_17	177.913574524262	1405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTGTACAGTTGGCTGG	13	True	NA	14	True	AATAAA	-14	NA	9958179	9993725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9962372_9962492_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986356_9986552_9986604_9986690_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320
ENSMUSG00000024287.9_9958180_9993725_2	chr18	+	1981	20	NNC	ENSMUSG00000024287.9	novel	4134	21	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	237.141378171329	1037	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTGTACAGTTGGCTGG	13	True	NA	14	True	AATAAA	-14	NA	9958179	9993725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986356_9986552_9986604_9986690_9986762_9987069_9987166_9987598_9987669_9989690_9989775_9992127_9992276_9992831_9992908_9993320
ENSMUSG00000024299.18_33743184_33748138_1	chr17	+	721	3	FSM	ENSMUSG00000024299.18	ENSMUST00000234715.2	2533	3	0	1812	0	-1812	multi-exon	FALSE	canonical	3	35	junction_2	2	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAGGCTGAAAGCAATGG	NA	False	NA	NA	False	ATTAAA	-19	NA	33743183	33748138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_33743233_33747257_33747445_33747653
ENSMUSG00000024312.11_34159634_34168472_1	chr17	+	2030	15	FSM	ENSMUSG00000024312.11	ENSMUST00000025170.11	2229	15	0	199	0	-199	multi-exon	FALSE	canonical	3	240	junction_8	25.4498305996527	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAAGTGTCTTTTTACCTT	1979	False	NA	NA	False	NA	NA	NA	34159633	34168472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34159781_34159858_34160066_34160165_34160247_34160379_34160493_34160606_34160695_34160795_34160858_34162319_34162425_34162531_34162683_34162774_34162911_34163455_34163556_34167193_34167508_34167616_34167712_34167809_34167906_34168046_34168161_34168251
ENSMUSG00000024313.9_21194705_21213745_1	chr18	+	870	7	NNC	ENSMUSG00000024313.9	novel	617	7	NA	NA	-275	-3497	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_6	23.9263917509979	819	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTGAATATATGTTGGT	NA	False	NA	NA	False	ATTAAA	-16	NA	21194704	21213745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_21194811_21194905_21195074_21200485_21200594_21203810_21203948_21208707_21208759_21209403_21209445_21213486
ENSMUSG00000024313.9_21194708_21200630_1	chr18	+	416	3	NNC	ENSMUSG00000024313.9	novel	617	7	NA	NA	-272	-16612	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_2	15	967	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGTCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	21194707	21200630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_21194811_21194905_21195074_21200485
ENSMUSG00000024313.9_21194708_21233256_1	chr18	+	2690	17	NNC	ENSMUSG00000024313.9	novel	617	7	NA	NA	-272	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_6	16.5481069536669	854	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGTGATCTTTCTCCC	NA	False	NA	9	True	AATAAA	-21	NA	21194707	21233256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_21194811_21194905_21195074_21200485_21200594_21203810_21203948_21208707_21208759_21209403_21209445_21213486_21213566_21217135_21217254_21219218_21219398_21221601_21221821_21222381_21222535_21224130_21224347_21226277_21226722_21227980_21228161_21229185_21229319_21230344_21230550_21233100
ENSMUSG00000024317.16_21134398_21159329_1	chr18	+	1159	8	FSM	ENSMUSG00000024317.16	ENSMUST00000234107.2	2422	8	0	1263	0	-1113	multi-exon	FALSE	canonical	3	116	junction_1	133.739008703443	750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTAGGTTTTTAATTG	NA	False	NA	13	True	AATAAA	-18	NA	21134397	21159329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
ENSMUSG00000024317.16_21135048_21159329_2	chr18	+	868	6	NIC	ENSMUSG00000024317.16	novel	2271	7	NA	NA	0	-1113	combination_of_known_junctions	FALSE	canonical	3	50	junction_3	152.012367917877	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTAGGTTTTTAATTG	NA	False	NA	13	True	AATAAA	-18	NA	21135047	21159329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_21135227_21141781_21141948_21143733_21143850_21153944_21154057_21157465_21157574_21159142
ENSMUSG00000024317.16_21135048_21159329_3	chr18	+	760	5	FSM	ENSMUSG00000024317.16	ENSMUST00000234545.2	1769	5	-104	1113	0	-1113	multi-exon	FALSE	canonical	3	50	junction_3	174.891930917353	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTAGGTTTTTAATTG	NA	False	NA	13	True	AATAAA	-18	NA	21135047	21159329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21153944_21154057_21159142
ENSMUSG00000024317.16_21135048_21160585_1	chr18	+	2124	6	NIC	ENSMUSG00000024317.16	novel	2271	7	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	50	junction_3	152.012367917877	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTGCAGTTTTGTAAAAA	NA	False	NA	3	True	AATAAA	-14	NA	21135047	21160585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_21135227_21141781_21141948_21143733_21143850_21153944_21154057_21157465_21157574_21159142
ENSMUSG00000024317.16_21135048_21160585_2	chr18	+	2073	6	FSM	ENSMUSG00000024317.16	ENSMUST00000052396.7	2769	6	0	696	0	1	multi-exon	FALSE	canonical	3	201	junction_5	108.138799697426	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTGCAGTTTTGTAAAAA	NA	False	NA	3	True	AATAAA	-14	NA	21135047	21160585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
ENSMUSG00000024317.16_21135048_21160585_3	chr18	+	2016	5	FSM	ENSMUSG00000024317.16	ENSMUST00000234545.2	1769	5	-104	-143	0	1	multi-exon	FALSE	canonical	3	50	junction_3	174.891930917353	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTGCAGTTTTGTAAAAA	NA	False	NA	3	True	AATAAA	-14	NA	21135047	21160585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21153944_21154057_21159142
ENSMUSG00000024317.16_21135048_21161281_1	chr18	+	2877	7	FSM	ENSMUSG00000024317.16	ENSMUST00000234536.2	2271	7	83	-689	0	0	multi-exon	FALSE	canonical	3	249	junction_6	95.8227530391399	1050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGTGTCTTAATTAAAA	NA	False	NA	3	True	ATTAAA	-15	NA	21135047	21161281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
ENSMUSG00000024319.19_34175062_34185463_1	chr17	+	2561	20	FSM	ENSMUSG00000024319.19	ENSMUST00000025178.17	3383	20	276	546	143	516	multi-exon	FALSE	canonical	2	228	junction_10	32.2850016205651	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGACCGTGTCCTCTCCT	NA	False	NA	13	True	NA	NA	NA	34175061	34185463	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34175157_34175903_34175989_34176822_34176876_34176990_34177067_34177263_34177332_34177574_34177751_34178198_34178350_34178968_34179070_34179160_34179294_34179420_34179479_34180084_34180219_34180586_34180743_34181040_34181160_34181396_34181521_34181699_34181796_34181883_34181992_34182151_34182218_34184254_34184367_34184634_34184754_34184932
ENSMUSG00000024325.9_34240058_34240785_1	chr17	-	529	2	ISM	ENSMUSG00000024325.9	ENSMUST00000174054.2	2552	3	2121	0	2121	0	3prime_fragment	FALSE	canonical	3	86	junction_1	0	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCAGTTCTCTGTGTGTG	NA	False	NA	2	True	NA	NA	NA	34240785	34240057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_34240458_34240656
ENSMUSG00000024327.17_34247247_34250474_1	chr17	-	2196	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	120	4	0	0	multi-exon	FALSE	canonical	3	543	junction_6	39.6512575112344	948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCAGCCTTTGTCTTTA	NA	False	NA	-6	True	AATAAA	-22	NA	34250474	34247246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
ENSMUSG00000024335.21_34331004_34332358_1	chr17	-	1010	3	ISM	ENSMUSG00000024335.21	ENSMUST00000095347.13	2617	12	5105	-333	348	0	3prime_fragment	TRUE	canonical	3	428	junction_1	48	142	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGAGTTAGTTTTCTTA	9775	False	NA	-16	True	AATAAA	-16	NA	34332358	34331003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_34331683_34331829_34331953_34332150
ENSMUSG00000024335.21_34331004_34332706_1	chr17	-	1270	4	ISM	ENSMUSG00000024335.21	ENSMUST00000095347.13	2617	12	4757	-333	0	0	3prime_fragment	FALSE	canonical	3	428	junction_1	40.0027776813339	153	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGAGTTAGTTTTCTTA	9427	False	NA	-16	True	AATAAA	-16	NA	34332706	34331003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543
ENSMUSG00000024335.21_34331004_34338305_1	chr17	-	3642	12	ISM	ENSMUSG00000024335.21	ENSMUST00000114242.9	4483	13	2416	7	-842	0	3prime_fragment	FALSE	canonical	3	318	junction_10	50.8649158990899	201	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGAGTTAGTTTTCTTA	9363	False	NA	-16	True	AATAAA	-16	NA	34338305	34331003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335881_34336186_34337579
ENSMUSG00000024346.7_36537136_36587339_1	chr18	-	895	4	NNC	ENSMUSG00000024346.7	novel	1109	4	NA	NA	238	122	at_least_one_novel_splicesite	FALSE	canonical	3	254	junction_3	1343.56044399449	7658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATGTGCTTTTCTCCAC	NA	False	NA	-23	True	AATAAA	-20	NA	36587339	36537135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_36537514_36565358_36565444_36584132_36584300_36587074
ENSMUSG00000024346.7_36537136_36587577_1	chr18	-	702	4	FSM	ENSMUSG00000024346.7	ENSMUST00000025204.7	1109	4	0	407	0	122	multi-exon	FALSE	canonical	3	3024	junction_2	66.9792671072342	10230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATGTGCTTTTCTCCAC	NA	False	NA	-23	True	AATAAA	-20	NA	36587577	36537135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_36537514_36565358_36565444_36584132_36584300_36587505
ENSMUSG00000024346.7_36537258_36587577_1	chr18	-	580	4	FSM	ENSMUSG00000024346.7	ENSMUST00000025204.7	1109	4	0	529	0	0	multi-exon	FALSE	canonical	3	3024	junction_2	66.9792671072342	1039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGCCAGGAGCTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	36587577	36537257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_36537514_36565358_36565444_36584132_36584300_36587505
ENSMUSG00000024352.13_35789742_35795209_1	chr18	-	708	6	NNC	ENSMUSG00000024352.13	novel	702	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	74.4714710476435	1448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAATGCCCAACCTCTC	NA	False	NA	-7	True	AATAAA	-26	NA	35795209	35789741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_35789934_35790001_35790105_35793335_35793407_35793496_35793628_35793844_35793911_35795064
ENSMUSG00000024352.13_35789742_35795209_2	chr18	-	606	5	NIC	ENSMUSG00000024352.13	novel	702	6	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_4	65.5820097282784	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAATGCCCAACCTCTC	NA	False	NA	-7	True	AATAAA	-26	NA	35795209	35789741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_-_35789898_35790001_35790105_35793335_35793407_35793496_35793628_35795064
ENSMUSG00000024357.11_35473573_35631982_1	chr18	-	867	6	NNC	ENSMUSG00000024357.11	novel	342	3	NA	NA	0	8124	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	60.4072843289615	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCTTTGTCTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	35631982	35473572	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_35473827_35474150_35474251_35481692_35481814_35551109_35551249_35571319_35571434_35631843
ENSMUSG00000024359.11_35070686_35087410_1	chr18	-	2829	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	0	-219	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	1554.29775139772	11384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTTTGTGAATGGTGAT	199	False	NA	-11	True	AATAAA	-19	NA	35087410	35070685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085532_35085725_35085789_35087222
ENSMUSG00000024359.11_35070686_35087410_2	chr18	-	2825	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	0	-219	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_15	1527.29290612304	11031	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTTTGTGAATGGTGAT	199	False	NA	-11	True	AATAAA	-19	NA	35087410	35070685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085532_35085729_35085789_35087222
ENSMUSG00000024359.11_35070686_35087410_3	chr18	-	2822	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	0	-219	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	1567.35186575757	10420	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTTTGTGAATGGTGAT	199	False	NA	-11	True	AATAAA	-19	NA	35087410	35070685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087230
ENSMUSG00000024359.11_35071171_35087410_1	chr18	-	2345	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	0	704	0	149	multi-exon	FALSE	canonical	3	5978	junction_5	267.479905787332	2448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTTCTGTCACTAGCCT	199	False	NA	-8	True	AATAAA	-20	NA	35087410	35071170	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
ENSMUSG00000024360.9_35037180_35065060_1	chr18	-	2361	11	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	0	-1342	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	328.264969194095	3123	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAAGATGATTTTGCTTG	NA	False	NA	-10	True	AATAAA	-31	NA	35065060	35037179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042983_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886
ENSMUSG00000024370.18_34758060_34765858_1	chr18	-	2930	19	NIC	ENSMUSG00000024370.18	novel	4133	16	NA	NA	1825	5944	intron_retention	FALSE	non_canonical	0	0	junction_1	0	711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACTCCTGCGGCTGG	NA	False	NA	NA	False	NA	NA	NA	34765858	34758059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_-_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
ENSMUSG00000024378.10_33336043_33346874_1	chr18	-	1421	6	FSM	ENSMUSG00000024378.10	ENSMUST00000025236.9	5097	6	41	3635	0	415	multi-exon	FALSE	canonical	3	38	junction_1	4.66476151587624	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCATTTATTCTGGGAGT	NA	False	NA	0	True	TATAAA	-20	NA	33346874	33336042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_33336869_33338103_33338219_33339172_33339300_33341229_33341280_33342095_33342211_33346686
ENSMUSG00000024378.10_33336263_33346874_1	chr18	-	1201	6	FSM	ENSMUSG00000024378.10	ENSMUST00000025236.9	5097	6	41	3855	0	195	multi-exon	FALSE	canonical	3	38	junction_1	4.66476151587624	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTTTCTCTTGCTATG	NA	False	NA	NA	False	NA	NA	NA	33346874	33336262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_33336869_33338103_33338219_33339172_33339300_33341229_33341280_33342095_33342211_33346686
ENSMUSG00000024378.10_33336458_33346874_1	chr18	-	1006	6	FSM	ENSMUSG00000024378.10	ENSMUST00000025236.9	5097	6	41	4050	0	0	multi-exon	FALSE	canonical	3	38	junction_1	4.66476151587624	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTAAAAGTCTTATTTG	NA	False	NA	NA	False	ATTAAA	-33	NA	33346874	33336457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_33336869_33338103_33338219_33339172_33339300_33341229_33341280_33342095_33342211_33346686
ENSMUSG00000024384.5_32219385_32230572_1	chr18	+	1074	8	ISM	ENSMUSG00000024384.5	ENSMUST00000025243.5	9613	14	18591	6809	-1929	0	3prime_fragment	FALSE	canonical	3	201	junction_1	12.6700675706524	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGTTGTCTCATCATTGT	NA	False	NA	17	True	AATAAA	-18	NA	32219384	32230572	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_+_32219477_32220122_32220206_32221308_32221439_32222441_32222560_32223481_32223594_32224198_32224256_32226170_32226283_32230202
ENSMUSG00000024392.18_35364694_35366283_1	chr17	+	661	6	ISM	ENSMUSG00000024392.18	ENSMUST00000166426.9	3787	24	10540	-2	-170	1	3prime_fragment	FALSE	canonical	3	699	junction_5	69.8386712359277	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGCCTAGTAGTTTCG	5714	False	NA	17	True	AATAAA	-18	NA	35364693	35366283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ENSMUSG00000024393.15_35380807_35383873_1	chr17	-	595	4	ISM	ENSMUSG00000024393.15	ENSMUST00000025253.12	6888	31	0	12755	0	-4698	5prime_fragment	FALSE	canonical	3	184	junction_2	7.25718035235908	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGACCCCCAACAGCCCCCGA	NA	False	NA	NA	False	NA	NA	NA	35383873	35380806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_35380886_35381177_35381356_35381847_35382023_35383710
ENSMUSG00000024400.17_31937151_31967141_1	chr18	+	1160	6	FSM	ENSMUSG00000024400.17	ENSMUST00000234344.2	2416	6	-78	1334	0	-1334	multi-exon	FALSE	canonical	3	387	junction_4	31.1088411870323	1867	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACTGAATAAAATCTAAAG	5655	False	NA	NA	False	AATAAA	-21	NA	31937150	31967141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635
ENSMUSG00000024400.17_31937151_32002603_1	chr18	+	1125	8	NNC	ENSMUSG00000024400.17	novel	4575	22	NA	NA	0	-16820	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	161.416434436282	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCTGGCCTTCAAATAAAA	5655	False	NA	NA	False	AATAAA	-19	NA	31937150	32002603	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_32002382
ENSMUSG00000024400.17_31937151_32020827_1	chr18	+	1776	15	ISM	ENSMUSG00000024400.17	ENSMUST00000025264.8	4575	22	0	19623	0	1404	5prime_fragment	FALSE	canonical	3	169	junction_7	107.163712256014	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAAGAAAAAAACCCAAGC	5655	False	NA	NA	False	NA	NA	NA	31937150	32020827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_32011076_32011204_32012723_32012879_32012990_32013070_32014224_32014336_32018428_32018524_32019069_32019157_32019707_32019848_32020749
ENSMUSG00000024404.8_12261812_12288562_1	chr18	+	1894	13	FSM	ENSMUSG00000024404.8	ENSMUST00000025270.8	3790	13	14	1882	0	0	multi-exon	FALSE	canonical	3	378	junction_8	18.23058327829	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATAATATAATTCTTTAAC	5519	False	NA	18	True	AATAAA	-28	NA	12261811	12288562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_12262031_12268908_12269025_12269749_12269896_12269984_12270093_12270296_12270407_12272373_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
ENSMUSG00000024404.8_12261812_12289758_1	chr18	+	3090	13	FSM	ENSMUSG00000024404.8	ENSMUST00000025270.8	3790	13	14	686	0	0	multi-exon	FALSE	canonical	3	378	junction_8	18.23058327829	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTCATTGTGTGGTTAA	5519	False	NA	10	True	ATTAAA	-22	NA	12261811	12289758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_12262031_12268908_12269025_12269749_12269896_12269984_12270093_12270296_12270407_12272373_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
ENSMUSG00000024406.17_35816915_35821669_1	chr17	+	1356	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	61	junction_1	1772.12772888977	33045	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGAATTTTGTTTTCCT	3036	False	NA	0	True	AATAAA	-20	NA	35816914	35821669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35817381_35820005_35820121_35820304_35820436_35820877_35821037_35821184
ENSMUSG00000024410.16_12301796_12313199_1	chr18	+	1265	7	ISM	ENSMUSG00000024410.16	ENSMUST00000126523.9	1282	9	22	978	0	-429	5prime_fragment	FALSE	canonical	3	285	junction_6	11.4515889242013	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGGTGTTGTGACTCTTG	NA	False	NA	NA	False	NA	NA	NA	12301795	12313199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545
ENSMUSG00000024413.15_12301796_12323031_1	chr18	-	2125	20	NIC	ENSMUSG00000024413.15	novel	5224	25	NA	NA	4296	20953	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	480	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTCCTAGGCCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	12323031	12301795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_-_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
ENSMUSG00000024413.15_12301796_12323031_2	chr18	-	2048	19	NIC	ENSMUSG00000024413.15	novel	5224	25	NA	NA	4296	20953	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	435	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTCCTAGGCCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	12323031	12301795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_-_12301960_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
ENSMUSG00000024414.14_94544602_94550915_1	chr11	+	826	4	FSM	ENSMUSG00000024414.14	ENSMUST00000132813.8	655	4	0	-171	0	0	multi-exon	FALSE	canonical	3	14	junction_1	381.100453365718	8607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGAAAGGGACAGGACAG	NA	False	NA	19	True	NA	NA	NA	94544601	94550915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_94544668_94547233_94547445_94547808_94547877_94550434
ENSMUSG00000024421.17_12657055_12661824_1	chr18	+	1038	8	NNC	ENSMUSG00000024421.17	novel	10548	75	NA	NA	19799	-54246	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	18.87445093133	85	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGCCTATGAGAACATCCT	5001	False	NA	NA	False	NA	NA	NA	12657054	12661824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_12657178_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769
ENSMUSG00000024422.15_36198828_36203521_1	chr17	+	1045	6	NIC	ENSMUSG00000024422.15	novel	3351	20	NA	NA	0	4	intron_retention	FALSE	canonical	3	1016	junction_3	64.0387382761403	1704	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCATGGGAACTCTGGAAC	7382	False	NA	11	True	AATAAA	-18	NA	36198827	36203521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_36199095_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
ENSMUSG00000024422.15_36198828_36203521_2	chr17	+	988	7	NNC	ENSMUSG00000024422.15	novel	3351	20	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	400.503017050642	5155	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCATGGGAACTCTGGAAC	7382	False	NA	11	True	AATAAA	-18	NA	36198827	36203521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_36198890_36198975_36199124_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
ENSMUSG00000024422.15_36198828_36203521_3	chr17	+	959	7	ISM	ENSMUSG00000024422.15	ENSMUST00000174366.8	3275	20	8111	-4	0	4	3prime_fragment	FALSE	canonical	3	1011	junction_1	73.3325757536626	7002	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCATGGGAACTCTGGAAC	7382	False	NA	11	True	AATAAA	-18	NA	36198827	36203521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_36198890_36198975_36199095_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
ENSMUSG00000024423.7_13105329_13124631_1	chr18	+	2038	11	FSM	ENSMUSG00000024423.7	ENSMUST00000025290.7	3763	11	349	1376	0	512	multi-exon	FALSE	canonical	3	761	junction_9	40.2394085443611	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTTCCCTGCGGAAGTT	NA	False	NA	NA	False	ATTAAA	-8	NA	13105328	13124631	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
ENSMUSG00000024423.7_13105329_13126007_1	chr18	+	3414	11	FSM	ENSMUSG00000024423.7	ENSMUST00000025290.7	3763	11	349	0	0	0	multi-exon	FALSE	canonical	3	761	junction_9	40.2394085443611	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	16	True	NA	NA	NA	13105328	13126007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
ENSMUSG00000024425.5_38552037_38597459_1	chr18	+	928	8	FSM	ENSMUSG00000024425.5	ENSMUST00000236085.2	1796	8	77	791	0	23	multi-exon	FALSE	canonical	3	612	junction_4	51.8734724387826	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTCTCTCTATTTGTTC	9144	False	NA	10	True	AATAAA	-17	NA	38552036	38597459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597329
ENSMUSG00000024425.5_38552037_38598250_1	chr18	+	1735	8	FSM	ENSMUSG00000024425.5	ENSMUST00000025293.5	1392	8	15	-358	0	0	multi-exon	FALSE	canonical	3	22	junction_7	234.910230357323	873	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTAGTGTTTCATTTGGGG	9144	False	NA	44	True	AATAAA	-29	NA	38552036	38598250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597313
ENSMUSG00000024426.18_36208501_36220938_1	chr17	-	1366	12	NIC	ENSMUSG00000024426.18	novel	1340	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	38.0604130471848	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTACCGACAAAAAGTGACT	NA	False	NA	-12	True	AATAAA	-24	NA	36220938	36208500	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_36208808_36209279_36209360_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUSG00000024442.7_38383312_38387803_1	chr18	+	1051	7	FSM	ENSMUSG00000024442.7	ENSMUST00000236078.2	1837	7	-16	802	0	-802	multi-exon	FALSE	canonical	3	315	junction_6	32.9515637801236	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGGCTCTGTCTTGAGTTC	3967	False	NA	NA	False	NA	NA	NA	38383311	38387803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522
ENSMUSG00000024446.14_36566565_36568758_1	chr17	-	520	5	FSM	ENSMUSG00000024446.14	ENSMUST00000025319.7	729	5	203	6	-10	0	multi-exon	FALSE	canonical	3	621	junction_3	61.4262769505038	6111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTGTTCTGTGGTATC	NA	False	NA	-22	True	AATAAA	-14	NA	36568758	36566564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568497_36568599_36568674
ENSMUSG00000024446.14_36566565_36568758_2	chr17	-	601	4	NIC	ENSMUSG00000024446.14	novel	729	5	NA	NA	-10	0	intron_retention	FALSE	canonical	3	710	junction_3	28.7672653471886	5378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTGTTCTGTGGTATC	NA	False	NA	-22	True	AATAAA	-14	NA	36568758	36566564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_36566691_36566835_36566962_36568333_36568599_36568674
ENSMUSG00000024454.17_38070130_38088030_1	chr18	-	1888	15	FSM	ENSMUSG00000024454.17	ENSMUST00000043498.9	2032	15	39	105	-3	-105	multi-exon	FALSE	canonical	3	500	junction_2	40.0044002681746	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTACCTTTCTGGGAT	NA	False	NA	-5	True	AATAAA	-20	NA	38088030	38070129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_38070737_38074005_38074164_38074431_38074512_38074760_38074820_38074930_38075021_38076508_38076574_38076730_38076805_38077181_38077263_38077944_38078079_38078392_38078449_38078563_38078621_38078746_38078829_38085523_38085667_38087734_38087818_38087911
ENSMUSG00000024456.17_38028891_38068466_1	chr18	-	1515	11	ISM	ENSMUSG00000024456.17	ENSMUST00000025337.14	5596	28	-32	52235	-2	319	5prime_fragment	FALSE	canonical	3	45	junction_4	3.38378486313773	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATATATATATATATAT	NA	False	NA	NA	False	NA	NA	NA	38068466	38028890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_-_38029267_38029413_38029525_38030546_38030656_38033697_38033838_38035137_38035202_38036116_38036204_38036379_38036511_38036808_38036911_38038056_38038213_38039440_38039468_38068254
ENSMUSG00000024457.17_37148065_37148761_1	chr17	+	465	2	ISM	ENSMUSG00000024457.17	ENSMUST00000134325.8	4338	5	32	18162	0	14	5prime_fragment	FALSE	canonical	3	108	junction_1	0	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAGAAAAGAAATGTATG	NA	False	NA	NA	False	NA	NA	NA	37148064	37148761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_37148157_37148388
ENSMUSG00000024462.18_37356912_37359970_1	chr17	+	1214	4	FSM	ENSMUSG00000024462.18	ENSMUST00000174456.8	1595	4	-8	389	0	-389	multi-exon	FALSE	canonical	3	45	junction_1	13.0213499897497	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGGTGAGATATGGGATTG	NA	False	NA	10	True	ATTAAA	-23	NA	37356911	37359970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_37357182_37357586_37357669_37358345_37358550_37359312
ENSMUSG00000024472.10_44513594_44551020_1	chr18	+	1600	11	FSM	ENSMUSG00000024472.10	ENSMUST00000025350.10	8616	11	0	7016	0	-7016	multi-exon	FALSE	canonical	2	46	junction_10	33.3472637558166	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTAGTTGCCTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	44513593	44551020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_44513754_44528939_44529092_44532690_44532819_44533383_44533483_44538276_44538430_44538523_44538637_44538719_44538828_44543249_44543386_44545582_44545694_44548443_44548496_44550632
ENSMUSG00000024472.10_44513727_44529155_1	chr18	+	243	2	FSM	ENSMUSG00000024472.10	ENSMUST00000202306.2	398	2	158	-3	133	3	multi-exon	FALSE	canonical	3	169	junction_1	0	1026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTTTTTGTTTTTCTTT	NA	False	NA	16	True	AATAAA	-17	NA	44513726	44529155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_44513754_44528939
ENSMUSG00000024472.10_44513727_44551020_1	chr18	+	1467	11	FSM	ENSMUSG00000024472.10	ENSMUST00000025350.10	8616	11	133	7016	133	-7016	multi-exon	FALSE	canonical	2	46	junction_10	33.3472637558166	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTAGTTGCCTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	44513726	44551020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_44513754_44528939_44529092_44532690_44532819_44533383_44533483_44538276_44538430_44538523_44538637_44538719_44538828_44543249_44543386_44545582_44545694_44548443_44548496_44550632
ENSMUSG00000024474.8_36877748_36890688_1	chr18	+	1956	19	NNC	ENSMUSG00000024474.8	novel	1955	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	220.456127882596	2223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	6	True	ATTAAA	-16	NA	36877747	36890688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882039_36882266_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36887589_36887692_36888478_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
ENSMUSG00000024474.8_36877748_36890688_2	chr18	+	1961	19	NNC	ENSMUSG00000024474.8	novel	1955	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	220.456127882596	2246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	6	True	ATTAAA	-16	NA	36877747	36890688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882039_36882266_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36887584_36887692_36888478_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
ENSMUSG00000024474.8_36886583_36890688_2	chr18	+	822	9	NNC	ENSMUSG00000024474.8	novel	2349	18	NA	NA	1175	0	at_least_one_novel_splicesite	FALSE	canonical	3	384	junction_3	129.49806948368	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	6	True	ATTAAA	-16	NA	36886582	36890688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_36886706_36886944_36886964_36887605_36887692_36888484_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
ENSMUSG00000024474.8_36886583_36890688_3	chr18	+	828	9	NNC	ENSMUSG00000024474.8	novel	2349	18	NA	NA	1175	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	246.644987786089	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	6	True	ATTAAA	-16	NA	36886582	36890688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_36886706_36886944_36886964_36887605_36887692_36888478_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
ENSMUSG00000024474.8_36886583_36890688_4	chr18	+	809	8	NNC	ENSMUSG00000024474.8	novel	2349	18	NA	NA	1175	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	342.599605656396	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	6	True	ATTAAA	-16	NA	36886582	36890688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_36886706_36887605_36887692_36888478_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
ENSMUSG00000024474.8_36886583_36890688_5	chr18	+	830	8	NNC	ENSMUSG00000024474.8	novel	2349	18	NA	NA	1175	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	342.599605656396	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	6	True	ATTAAA	-16	NA	36886582	36890688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_36886706_36887584_36887692_36888478_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
ENSMUSG00000024474.8_36886583_36890688_6	chr18	+	825	8	NNC	ENSMUSG00000024474.8	novel	2349	18	NA	NA	1175	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	342.599605656396	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	6	True	ATTAAA	-16	NA	36886582	36890688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_36886706_36887589_36887692_36888478_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
ENSMUSG00000024477.5_46373015_46413897_1	chr18	-	2717	9	FSM	ENSMUSG00000024477.5	ENSMUST00000236216.2	7477	9	163	4597	0	657	multi-exon	FALSE	canonical	3	105	junction_2	12.5642100826116	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTGTCGTCTTGTTTTA	NA	False	NA	NA	False	GATAAA	-16	NA	46413897	46373014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_46374769_46379628_46379738_46381937_46382123_46387345_46387392_46391151_46391285_46392670_46392823_46395956_46396025_46407656_46407776_46413746
ENSMUSG00000024477.5_46401356_46413897_1	chr18	-	647	3	NNC	ENSMUSG00000024477.5	novel	1039	2	NA	NA	0	5202	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	69	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAGTCCTGCTGAATCC	NA	False	NA	NA	False	TTTAAA	-5	NA	46413897	46401355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_46401733_46407656_46407776_46413746
ENSMUSG00000024480.10_46875009_46923579_1	chr18	+	1140	6	FSM	ENSMUSG00000024480.10	ENSMUST00000025357.9	1520	6	66	314	0	-111	multi-exon	FALSE	canonical	3	541	junction_4	49.1064150595419	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTAAAGTACCTTTCTGT	NA	False	NA	NA	False	AATAAA	-17	NA	46875008	46923579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_46875149_46887437_46887530_46891069_46891182_46912254_46912327_46913727_46913836_46922963
ENSMUSG00000024480.10_46875009_46923690_1	chr18	+	1251	6	FSM	ENSMUSG00000024480.10	ENSMUST00000025357.9	1520	6	66	203	0	0	multi-exon	FALSE	canonical	3	541	junction_4	49.1064150595419	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCAGTGTTGACTTTTTC	NA	False	NA	NA	False	AATAAA	-26	NA	46875008	46923690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_46875149_46887437_46887530_46891069_46891182_46912254_46912327_46913727_46913836_46922963
ENSMUSG00000024491.17_42408437_42425154_1	chr18	+	447	3	ISM	ENSMUSG00000024491.17	ENSMUST00000236240.2	6301	21	0	49342	0	-7143	5prime_fragment	FALSE	canonical	3	108	junction_1	4	1256	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAATTAAAGAAGAGGT	NA	False	NA	NA	False	AAGAAA	-3	NA	42408436	42425154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_+_42408658_42421172_42421292_42425047
ENSMUSG00000024498.17_42686447_42708670_1	chr18	+	2187	9	ISM	ENSMUSG00000024498.17	ENSMUST00000025375.15	4101	21	41881	-51	0	51	3prime_fragment	FALSE	canonical	3	625	junction_6	61.7368407031004	413	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGTTTTTTATTTTTTC	NA	False	NA	20	True	AATATA	-18	NA	42686446	42708670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_+_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
ENSMUSG00000024507.7_50261395_50329336_1	chr18	+	2557	24	FSM	ENSMUSG00000024507.7	ENSMUST00000025385.7	2684	24	127	0	127	0	multi-exon	FALSE	canonical	3	285	junction_3	18.279183363144	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGCTCCTCTTTGCAT	NA	False	NA	14	True	AATAAA	-23	NA	50261394	50329336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_50261477_50263192_50263247_50272514_50272623_50273406_50273467_50275536_50275559_50275659_50275707_50277807_50277893_50279456_50279645_50288193_50288286_50291451_50291477_50293201_50293331_50295168_50295270_50297681_50297919_50299950_50300003_50303786_50303859_50305094_50305199_50306730_50306797_50310238_50310309_50310973_50311081_50312113_50312201_50314998_50315086_50316225_50316365_50324778_50324907_50328921
ENSMUSG00000024525.8_67422322_67451910_1	chr18	+	1356	8	FSM	ENSMUSG00000024525.8	ENSMUST00000025403.8	5054	8	66	3632	0	1931	multi-exon	FALSE	canonical	3	959	junction_6	106.526800307122	4923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTGGGTCTTCCTCCAG	NA	False	NA	NA	False	AATAAA	-18	NA	67422321	67451910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_67422577_67435245_67435380_67439740_67439846_67442121_67442168_67443716_67443826_67448689_67448799_67449951_67450104_67451464
ENSMUSG00000024525.8_67422322_67452282_1	chr18	+	1728	8	FSM	ENSMUSG00000024525.8	ENSMUST00000025403.8	5054	8	66	3260	0	2303	multi-exon	FALSE	canonical	3	959	junction_6	106.526800307122	5494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTAAACAGTGGAATTT	NA	False	NA	24	True	CATAAA	-19	NA	67422321	67452282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_67422577_67435245_67435380_67439740_67439846_67442121_67442168_67443716_67443826_67448689_67448799_67449951_67450104_67451464
ENSMUSG00000024525.8_67422449_67451910_1	chr18	+	1229	8	FSM	ENSMUSG00000024525.8	ENSMUST00000025403.8	5054	8	193	3632	127	1931	multi-exon	FALSE	canonical	3	959	junction_6	106.526800307122	2947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTGGGTCTTCCTCCAG	NA	False	NA	NA	False	AATAAA	-18	NA	67422448	67451910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_67422577_67435245_67435380_67439740_67439846_67442121_67442168_67443716_67443826_67448689_67448799_67449951_67450104_67451464
ENSMUSG00000024526.10_67476861_67500855_1	chr18	+	928	5	FSM	ENSMUSG00000024526.10	ENSMUST00000025404.10	1115	5	187	0	187	0	multi-exon	FALSE	canonical	1	47	junction_1	40.4042077016738	1351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGCAACTGGTTTGT	6395	False	NA	28	True	AATAAA	-26	NA	67476860	67500855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_67476911_67491779_67491925_67493165_67493313_67499444_67499627_67500451
ENSMUSG00000024527.11_67537834_67542561_1	chr18	-	1040	3	ISM	ENSMUSG00000024527.11	ENSMUST00000025408.10	3094	17	39681	0	26457	0	3prime_fragment	FALSE	canonical	3	752	junction_1	12	525	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGGGTTGCCATGTTGTG	6695	False	NA	-2	True	AATAAA	-31	NA	67542561	67537833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_-_67538585_67540335_67540531_67542467
ENSMUSG00000024528.9_52598765_52623816_1	chr18	+	1469	8	FSM	ENSMUSG00000024528.9	ENSMUST00000025406.9	2656	8	0	1187	0	-1187	multi-exon	FALSE	canonical	3	351	junction_5	82.8179710360657	871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGCTTGTTTTTCTTTTT	NA	False	NA	8	True	TATAAA	-4	NA	52598764	52623816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515
ENSMUSG00000024528.9_52598765_52623949_1	chr18	+	1602	8	FSM	ENSMUSG00000024528.9	ENSMUST00000025406.9	2656	8	0	1054	0	-1054	multi-exon	FALSE	canonical	3	351	junction_5	82.8179710360657	1024	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAGGTTTTCTCATTCAT	NA	False	NA	NA	False	CATAAA	-21	NA	52598764	52623949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515
ENSMUSG00000024528.9_52598765_52624345_1	chr18	+	1998	8	FSM	ENSMUSG00000024528.9	ENSMUST00000025406.9	2656	8	0	658	0	-658	multi-exon	FALSE	canonical	3	351	junction_5	82.8179710360657	1193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTTGTGACTTATCTTT	NA	False	NA	10	True	AATAAA	-22	NA	52598764	52624345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515
ENSMUSG00000024528.9_52598765_52625005_1	chr18	+	2593	9	NNC	ENSMUSG00000024528.9	novel	2656	8	NA	NA	0	2	at_least_one_novel_splicesite	TRUE	canonical	3	36	junction_8	183.6769837922	1253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATGTGGCCTGCATATA	NA	False	NA	4	True	ATTAAA	-15	NA	52598764	52625005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515_52624796_52624860
ENSMUSG00000024537.6_67774669_67787234_1	chr18	+	940	6	NIC	ENSMUSG00000024537.6	novel	1059	7	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	2	6	junction_5	172.967048885041	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGTTTTATCTGGAAAGTA	NA	False	NA	28	True	AATAAA	-34	NA	67774668	67787234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_67774806_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786955
ENSMUSG00000024537.6_67774669_67787234_2	chr18	+	1002	6	NIC	ENSMUSG00000024537.6	novel	1059	7	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	3	17	junction_2	169.713169789501	3845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGTTTTATCTGGAAAGTA	NA	False	NA	28	True	AATAAA	-34	NA	67774668	67787234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_67774806_67777378_67777551_67781197_67781317_67781842_67782017_67786222_67786344_67786955
ENSMUSG00000024538.9_53539404_53551187_1	chr18	-	1309	4	NIC	ENSMUSG00000024538.9	novel	1403	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_2	180.261538388593	1725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTGCAAGACTTTG	NA	False	NA	-11	True	ATTAAA	-20	NA	53551187	53539403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_-_53540138_53542196_53542382_53544577_53544692_53550911
ENSMUSG00000024539.18_67798582_67857643_1	chr18	-	1560	10	NNC	ENSMUSG00000024539.18	novel	1568	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	132.404915801473	1627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGTTGGTTTGTGTGTGT	NA	False	NA	-15	True	ATTAAA	-18	NA	67857643	67798581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_67798945_67805736_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828686_67828795_67844906_67844998_67857511
ENSMUSG00000024542.10_67933204_67938465_1	chr18	+	697	5	NNC	ENSMUSG00000024542.10	novel	2607	16	NA	NA	0	18	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_4	52.1410347039642	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAAAAGAAATTATT	134	False	NA	NA	False	NA	NA	NA	67933203	67938465	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435_67937565_67938289
ENSMUSG00000024544.10_68400727_68433278_1	chr18	+	2056	4	NIC	ENSMUSG00000024544.10	novel	3031	6	NA	NA	39589	31577	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	414	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAACGTGCTCCGACCCTC	1793	False	NA	NA	False	NA	NA	NA	68400726	68433278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_68402024_68405633_68405746_68408832_68409346_68433144
ENSMUSG00000024544.10_68401257_68433278_1	chr18	+	1526	4	NIC	ENSMUSG00000024544.10	novel	3031	6	NA	NA	40119	31577	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	284	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAACGTGCTCCGACCCTC	2323	False	NA	NA	False	NA	NA	NA	68401256	68433278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_68402024_68405633_68405746_68408832_68409346_68433144
ENSMUSG00000024544.10_68401257_68433404_1	chr18	+	1652	4	NIC	ENSMUSG00000024544.10	novel	3031	6	NA	NA	40119	31703	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	284	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCCCGGGCGCACTCCCC	2323	False	NA	NA	False	NA	NA	NA	68401256	68433404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_68402024_68405633_68405746_68408832_68409346_68433144
ENSMUSG00000024556.5_73903111_73948509_1	chr18	-	2501	16	FSM	ENSMUSG00000024556.5	ENSMUST00000025439.5	2638	16	0	137	0	-137	multi-exon	FALSE	canonical	3	442	junction_8	47.5095312074909	2333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTCAGTTACATTATCT	371	False	NA	0	True	AATAAA	-20	NA	73948509	73903110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_73903880_73906200_73906300_73908449_73908521_73914112_73914216_73918765_73918909_73921424_73921540_73924154_73924269_73924679_73924778_73924871_73924982_73927516_73927621_73927851_73928014_73929384_73929461_73930899_73931050_73934799_73934934_73938122_73938241_73948374
ENSMUSG00000024556.5_73903641_73948509_1	chr18	-	1966	16	NNC	ENSMUSG00000024556.5	novel	2638	16	NA	NA	0	-667	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	143.814602874673	1936	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTACGGTGTCATCTGTGGT	371	False	NA	-4	True	AAAAAG	-15	NA	73948509	73903640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_73903880_73906200_73906300_73908449_73908521_73914112_73914216_73918765_73918909_73921424_73921540_73924154_73924269_73924679_73924778_73924871_73924982_73927516_73927621_73927851_73928014_73929384_73929461_73930899_73931050_73934799_73934934_73938122_73938236_73948374
ENSMUSG00000024556.5_73903641_73948509_2	chr18	-	1971	16	FSM	ENSMUSG00000024556.5	ENSMUST00000025439.5	2638	16	0	667	0	-667	multi-exon	FALSE	canonical	3	442	junction_8	47.5095312074909	1977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTACGGTGTCATCTGTGGT	371	False	NA	-4	True	AAAAAG	-15	NA	73948509	73903640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_73903880_73906200_73906300_73908449_73908521_73914112_73914216_73918765_73918909_73921424_73921540_73924154_73924269_73924679_73924778_73924871_73924982_73927516_73927621_73927851_73928014_73929384_73929461_73930899_73931050_73934799_73934934_73938122_73938241_73948374
ENSMUSG00000024563.17_76374993_76438221_1	chr18	+	1933	11	NNC	ENSMUSG00000024563.17	novel	8089	11	NA	NA	-124	-144	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	81.0758287037512	233	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCCGTTATTTTTGTGT	NA	False	NA	17	True	TATAAA	-28	NA	76374992	76438221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_76375055_76395515_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
ENSMUSG00000024563.17_76374993_76438365_1	chr18	+	2077	11	NNC	ENSMUSG00000024563.17	novel	8089	11	NA	NA	-124	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	81.0758287037512	342	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGATTAACTTGGAAGTCC	NA	False	NA	9	True	AATAAA	-22	NA	76374992	76438365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_76375055_76395515_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
ENSMUSG00000024576.15_61688345_61691031_1	chr18	+	912	3	NNC	ENSMUSG00000024576.15	novel	4083	10	NA	NA	0	-278	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	887.5	106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACCACTGGTCATTTGTA	428	False	NA	NA	False	AATAAA	-17	NA	61688344	61691031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_61688945_61689573_61689681_61690826
ENSMUSG00000024576.15_61688345_61721377_1	chr18	+	2328	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165123.8	4083	10	0	1755	0	2	multi-exon	TRUE	canonical	0	0	junction_9	613.012254927549	1056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGTGAAATTTTTTTAAA	428	False	NA	29	True	ATTAAA	-22	NA	61688344	61721377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
ENSMUSG00000024576.15_61688399_61721293_1	chr18	+	2190	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165123.8	4083	10	54	1839	0	40	multi-exon	FALSE	canonical	0	0	junction_9	613.012254927549	760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACGATCTGGGATTTTGT	482	False	NA	9	True	GATAAA	-20	NA	61688398	61721293	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
ENSMUSG00000024576.15_61721739_61722455_2	chr18	+	459	2	NNC	ENSMUSG00000024576.15	novel	4083	10	NA	NA	5824	-677	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTCTCATAAAGCTATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61721738	61722455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_61722027_61722284
ENSMUSG00000024576.15_61721739_61723134_1	chr18	+	1137	2	NNC	ENSMUSG00000024576.15	novel	4083	10	NA	NA	5824	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGAGGCTGGTTGTCTCT	NA	False	NA	15	True	AATAAA	-18	NA	61721738	61723134	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_61722027_61722285
ENSMUSG00000024576.15_61721739_61723134_2	chr18	+	1138	2	NNC	ENSMUSG00000024576.15	novel	4083	10	NA	NA	5824	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGAGGCTGGTTGTCTCT	NA	False	NA	15	True	AATAAA	-18	NA	61721738	61723134	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_61722027_61722284
ENSMUSG00000024576.15_61721739_61723391_1	chr18	+	1395	2	NNC	ENSMUSG00000024576.15	novel	4083	10	NA	NA	5824	259	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGAATGAGCCATGAAGAT	NA	False	NA	24	True	AATAAA	-22	NA	61721738	61723391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_61722027_61722284
ENSMUSG00000024580.9_61848556_61859394_1	chr18	-	977	4	FSM	ENSMUSG00000024580.9	ENSMUST00000062991.9	4038	4	0	3061	0	445	multi-exon	FALSE	canonical	3	248	junction_1	10.9645894689324	821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTACCTGTGTTTTCA	NA	False	NA	NA	False	TTTAAA	-28	NA	61859394	61848555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_61849199_61851824_61851907_61852772_61852927_61859296
ENSMUSG00000024580.9_61848795_61859394_1	chr18	-	738	4	FSM	ENSMUSG00000024580.9	ENSMUST00000062991.9	4038	4	0	3300	0	206	multi-exon	FALSE	canonical	3	248	junction_1	10.9645894689324	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGTCTCCTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	61859394	61848794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_61849199_61851824_61851907_61852772_61852927_61859296
ENSMUSG00000024581.14_63110932_63130311_2	chr18	+	1327	12	FSM	ENSMUSG00000024581.14	ENSMUST00000025474.14	3567	12	30	2210	0	20	multi-exon	FALSE	canonical	3	194	junction_8	19.1691039293584	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTATACTTAGTCTTTTC	NA	False	NA	NA	False	AGTAAA	-9	NA	63110931	63130311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
ENSMUSG00000024581.14_63110932_63130432_2	chr18	+	1448	12	FSM	ENSMUSG00000024581.14	ENSMUST00000025474.14	3567	12	30	2089	0	0	multi-exon	FALSE	canonical	3	194	junction_8	19.1691039293584	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCTGGTTCTTTCGATG	NA	False	NA	14	True	NA	NA	NA	63110931	63130432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
ENSMUSG00000024581.14_63110932_63130432_7	chr18	+	1439	11	NNC	ENSMUSG00000024581.14	novel	3567	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	73.6791015146086	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCTGGTTCTTTCGATG	NA	False	NA	14	True	NA	NA	NA	63110931	63130432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_63111096_63113536_63113605_63115689_63115775_63117101_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
ENSMUSG00000024583.4_63797177_63825193_1	chr18	-	1016	8	FSM	ENSMUSG00000024583.4	ENSMUST00000237004.2	4343	8	315	3012	200	0	multi-exon	FALSE	canonical	3	853	junction_1	53.8088074120031	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAAGTCTTCGTCATTCT	NA	False	NA	-7	True	AATAAA	-19	NA	63825193	63797176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_63797404_63804652_63804758_63807119_63807293_63808514_63808585_63809949_63810073_63812423_63812598_63815281_63815379_63825146
ENSMUSG00000024583.4_63797177_63825398_1	chr18	-	1221	8	FSM	ENSMUSG00000024583.4	ENSMUST00000237004.2	4343	8	110	3012	-5	0	multi-exon	FALSE	canonical	3	853	junction_1	53.8088074120031	5606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAAGTCTTCGTCATTCT	NA	False	NA	-7	True	AATAAA	-19	NA	63825398	63797176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_63797404_63804652_63804758_63807119_63807293_63808514_63808585_63809949_63810073_63812423_63812598_63815281_63815379_63825146
ENSMUSG00000024583.4_63797177_63825398_2	chr18	-	1220	8	NNC	ENSMUSG00000024583.4	novel	4343	8	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	328.075215368024	5046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAAGTCTTCGTCATTCT	NA	False	NA	-7	True	AATAAA	-19	NA	63825398	63797176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_63797404_63804652_63804758_63807119_63807288_63808510_63808585_63809949_63810073_63812423_63812598_63815281_63815379_63825146
ENSMUSG00000024583.4_63797242_63825508_1	chr18	-	1266	8	FSM	ENSMUSG00000024583.4	ENSMUST00000237004.2	4343	8	0	3077	0	0	multi-exon	FALSE	canonical	3	853	junction_1	53.8088074120031	2914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTAGTGTTTGTAGTGTA	NA	False	NA	0	True	AATAAA	-24	NA	63825508	63797241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_63797404_63804652_63804758_63807119_63807293_63808514_63808585_63809949_63810073_63812423_63812598_63815281_63815379_63825146
ENSMUSG00000024587.11_64632726_64649552_1	chr18	-	2563	15	FSM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	127	-3	-1	0	multi-exon	FALSE	canonical	3	2259	junction_14	785.439045946889	9252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	AATAAA	-23	NA	64649552	64632725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
ENSMUSG00000024587.11_64633144_64649604_1	chr18	-	2197	15	FSM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	75	415	-5	140	multi-exon	FALSE	canonical	3	2259	junction_14	785.439045946889	8094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTAGTCTTTTCCTTATT	NA	False	NA	-1	True	CATAAA	-37	NA	64649604	64633143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
ENSMUSG00000024587.11_64633284_64649552_1	chr18	-	2006	15	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	1337.91481837391	1532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTCTGACATCCAGTA	NA	False	NA	-10	True	AATAAA	-26	NA	64649552	64633283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643597_64644677_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
ENSMUSG00000024587.11_64633284_64649552_2	chr18	-	2005	15	FSM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	127	555	-1	0	multi-exon	FALSE	canonical	3	2259	junction_14	785.439045946889	2611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTCTGACATCCAGTA	NA	False	NA	-10	True	AATAAA	-26	NA	64649552	64633283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
ENSMUSG00000024588.11_64590336_64622026_1	chr18	-	2075	11	FSM	ENSMUSG00000024588.11	ENSMUST00000236586.3	6571	11	145	4351	-14	0	multi-exon	FALSE	canonical	3	260	junction_4	29.1315979650963	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGCTGTGTACGCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	64622026	64590335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595286_64597156_64597256_64600798_64600906_64603752_64603888_64608127_64608277_64611721_64611842_64616404_64616529_64621971
ENSMUSG00000024588.11_64590336_64622134_1	chr18	-	2183	11	FSM	ENSMUSG00000024588.11	ENSMUST00000236586.3	6571	11	37	4351	0	0	multi-exon	FALSE	canonical	3	260	junction_4	29.1315979650963	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGCTGTGTACGCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	64622134	64590335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595286_64597156_64597256_64600798_64600906_64603752_64603888_64608127_64608277_64611721_64611842_64616404_64616529_64621971
ENSMUSG00000024594.10_57487818_57522681_1	chr18	+	1678	9	FSM	ENSMUSG00000024594.10	ENSMUST00000025490.10	5030	9	5	3347	0	374	multi-exon	FALSE	canonical	3	500	junction_4	197.841121547064	1386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCCTCTTTTTACTGTC	NA	False	NA	NA	False	AATAAA	-33	NA	57487817	57522681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_57487964_57495504_57495622_57496147_57496538_57498260_57498422_57504438_57504542_57507598_57507763_57514699_57514804_57517245_57517349_57522291
ENSMUSG00000024594.10_57506964_57522681_1	chr18	+	1094	6	NNC	ENSMUSG00000024594.10	novel	523	5	NA	NA	0	374	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_4	427.566883656815	3039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCCTCTTTTTACTGTC	NA	False	NA	NA	False	AATAAA	-33	NA	57506963	57522681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_57507100_57507598_57507763_57514699_57514804_57517245_57517349_57521897_57522095_57522291
ENSMUSG00000024594.10_57506964_57522681_2	chr18	+	897	5	FSM	ENSMUSG00000024594.10	ENSMUST00000238057.2	523	5	0	-374	0	374	multi-exon	FALSE	canonical	3	123	junction_1	350.033123432626	7824	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCCTCTTTTTACTGTC	NA	False	NA	NA	False	AATAAA	-33	NA	57506963	57522681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_57507100_57507598_57507763_57514699_57514804_57517245_57517349_57522291
ENSMUSG00000024594.10_57506964_57522681_3	chr18	+	953	5	NIC	ENSMUSG00000024594.10	novel	523	5	NA	NA	0	374	combination_of_known_junctions	FALSE	canonical	3	294	junction_1	276.069284781918	9401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCCTCTTTTTACTGTC	NA	False	NA	NA	False	AATAAA	-33	NA	57506963	57522681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_57507156_57507598_57507763_57514699_57514804_57517245_57517349_57522291
ENSMUSG00000024603.9_60659273_60690322_1	chr18	+	2222	13	FSM	ENSMUSG00000024603.9	ENSMUST00000025505.7	3738	13	0	1516	0	-689	multi-exon	FALSE	canonical	3	145	junction_9	21.4333592534835	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCATGCCCTGTTCTATA	NA	False	NA	12	True	ATTAAA	-15	NA	60659272	60690322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_60659438_60667664_60667736_60671335_60671515_60674643_60674688_60677110_60677219_60678819_60678894_60679292_60679406_60679838_60679949_60683257_60683332_60684959_60685015_60685916_60686025_60688178_60688277_60689299
ENSMUSG00000024608.12_60907668_60911559_1	chr18	+	531	5	NNC	ENSMUSG00000024608.12	novel	597	5	NA	NA	0	30	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	10943.7120616133	29800	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGTCTGTGAACAGGACTT	NA	False	NA	9	True	AAGAAA	-18	NA	60907667	60911559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_60907759_60909472_60909624_60910001_60910164_60910891_60910962_60911502
ENSMUSG00000024608.12_60907737_60911618_1	chr18	+	511	5	NNC	ENSMUSG00000024608.12	novel	597	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	11701.1630698619	60960	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTGGTGTTGTGT	NA	False	NA	68	True	AATAAA	-18	NA	60907736	60911618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_60907759_60909489_60909624_60910001_60910164_60910884_60910962_60911502
ENSMUSG00000024608.12_60907737_60911618_2	chr18	+	521	5	NNC	ENSMUSG00000024608.12	novel	597	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	10943.7120616133	414256	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTGGTGTTGTGT	NA	False	NA	68	True	AATAAA	-18	NA	60907736	60911618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_60907759_60909472_60909624_60910001_60910164_60910891_60910962_60911502
ENSMUSG00000024613.17_60946827_60949209_1	chr18	-	712	4	ISM	ENSMUSG00000024613.17	ENSMUST00000175934.8	4595	26	32792	0	12890	0	3prime_fragment	FALSE	canonical	3	1176	junction_3	174.501830617587	329	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	-18	True	AATAAA	-17	NA	60949209	60946826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072
ENSMUSG00000024613.17_60972645_60982007_1	chr18	-	448	4	ISM	ENSMUSG00000024613.17	ENSMUST00000177172.8	3229	20	-17	21543	-6	-890	5prime_fragment	FALSE	canonical	3	1086	junction_1	85.7684220574345	230	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGAGTTTATTTCCGAGTT	NA	False	NA	NA	False	AGTAAA	-7	NA	60982007	60972644	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_-_60972706_60976297_60976444_60978882_60978939_60981822
ENSMUSG00000024614.8_90528396_90560329_1	chr18	+	3431	16	FSM	ENSMUSG00000024614.8	ENSMUST00000025515.7	4611	16	118	1062	0	-1062	multi-exon	FALSE	canonical	3	189	junction_13	15.4033185457622	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTTCTTTTTGAGGATA	4860	False	NA	41	True	ATTAAA	-14	NA	90528395	90560329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653_90541754_90542404_90542483_90545999_90546067_90548183_90548283_90551106_90551165_90551344_90551399_90552505_90552563_90555198_90555329_90556622_90556692_90558062
ENSMUSG00000024640.10_15882494_15902313_1	chr19	-	2048	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-19	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	1098.49447398474	3680	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	-17	True	ATTAAA	-17	NA	15902313	15882493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898349_15902222
ENSMUSG00000024640.10_15882494_15902313_2	chr19	-	2043	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1104.86017214849	2725	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	-17	True	ATTAAA	-17	NA	15902313	15882493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894598_15895565_15895776_15896818_15896889_15898299_15898361_15902227
ENSMUSG00000024640.10_15882494_15902423_1	chr19	-	2161	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1114.25793692484	7577	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	-17	True	ATTAAA	-17	NA	15902423	15882493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_15883516_15884293_15884424_15886660_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
ENSMUSG00000024640.10_15882494_15902423_2	chr19	-	2158	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1105.83667419742	8195	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	-17	True	ATTAAA	-17	NA	15902423	15882493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896882_15898299_15898361_15902227
ENSMUSG00000024640.10_15882494_15902423_3	chr19	-	2156	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	1101.94616900056	8392	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	-17	True	ATTAAA	-17	NA	15902423	15882493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894605_15895569_15895776_15896818_15896889_15898299_15898361_15902227
ENSMUSG00000024640.10_15882841_15902313_4	chr19	-	1699	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-19	-347	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	1101.94616900056	791	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGTGCATGACTGTC	NA	False	NA	-4	True	AATGAA	-19	NA	15902313	15882840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894605_15895569_15895776_15896818_15896889_15898299_15898361_15902227
ENSMUSG00000024645.6_84965407_84969649_1	chr18	-	1327	6	FSM	ENSMUSG00000024645.6	ENSMUST00000025547.4	2418	6	0	1091	0	0	multi-exon	FALSE	canonical	3	52	junction_4	6.15142259969188	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAGCATTTTTATTTAC	NA	False	NA	NA	False	AATAAA	-20	NA	84969649	84965406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_84965871_84965958_84966065_84966147_84966222_84967318_84967417_84967514_84967578_84969127
ENSMUSG00000024646.15_84869502_84897989_1	chr18	+	760	3	NNC	ENSMUSG00000024646.15	novel	534	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	486.5	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCATATGTGTCTGTCTGT	NA	False	NA	12	True	AATATA	-17	NA	84869501	84897989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_84869733_84889629_84889759_84897589
ENSMUSG00000024646.15_84869502_84897989_4	chr18	+	769	3	NNC	ENSMUSG00000024646.15	novel	534	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	486.5	4450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCATATGTGTCTGTCTGT	NA	False	NA	12	True	AATATA	-17	NA	84869501	84897989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_84869733_84889629_84889779_84897600
ENSMUSG00000024654.9_9089401_9113000_1	chr19	-	2026	7	FSM	ENSMUSG00000024654.9	ENSMUST00000049948.6	4195	7	0	2169	0	-2169	multi-exon	FALSE	canonical	3	393	junction_3	31.0344790336311	2540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTGGTTAGGTGTCACT	NA	False	NA	NA	False	AATAAA	-21	NA	9113000	9089400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_9090573_9091547_9091659_9093865_9093985_9095892_9096051_9096551_9096695_9112150_9112352_9112878
ENSMUSG00000024654.9_9090012_9113000_1	chr19	-	1415	7	FSM	ENSMUSG00000024654.9	ENSMUST00000049948.6	4195	7	0	2780	0	-2780	multi-exon	FALSE	canonical	3	393	junction_3	31.0344790336311	1955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTAAGAAAGACCCAGGTC	NA	False	NA	NA	False	NA	NA	NA	9113000	9090011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_9090573_9091547_9091659_9093865_9093985_9095892_9096051_9096551_9096695_9112150_9112352_9112878
ENSMUSG00000024654.9_9090292_9113000_1	chr19	-	1135	7	FSM	ENSMUSG00000024654.9	ENSMUST00000049948.6	4195	7	0	3060	0	-3060	multi-exon	FALSE	canonical	3	393	junction_3	31.0344790336311	1910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCAGTCTGTCCCTCCTTTT	NA	False	NA	1	True	NA	NA	NA	9113000	9090291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_9090573_9091547_9091659_9093865_9093985_9095892_9096051_9096551_9096695_9112150_9112352_9112878
ENSMUSG00000024660.10_9849706_9854180_1	chr19	-	1097	5	ISM	ENSMUSG00000024660.10	ENSMUST00000237439.2	2643	18	18644	-335	1823	0	3prime_fragment	FALSE	canonical	3	446	junction_4	34.9070193514141	628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCTGTGGATATTGTGA	NA	False	NA	34	True	AATAAA	-15	NA	9854180	9849705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953
ENSMUSG00000024660.10_9849706_9855568_1	chr19	-	1294	7	ISM	ENSMUSG00000024660.10	ENSMUST00000237439.2	2643	18	17256	-335	435	0	3prime_fragment	FALSE	canonical	3	443	junction_5	38.2143079661706	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCTGTGGATATTGTGA	NA	False	NA	34	True	AATAAA	-15	NA	9855568	9849705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855161_9855491
ENSMUSG00000024667.13_10527825_10533120_1	chr19	-	897	6	NIC	ENSMUSG00000024667.13	novel	876	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	28.4717403753266	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGGTTGATTTTCTCCT	NA	False	NA	-3	True	AATAAA	-17	NA	10533120	10527824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_10528184_10528321_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533062
ENSMUSG00000024668.9_10479005_10502479_1	chr19	-	1723	4	FSM	ENSMUSG00000024668.9	ENSMUST00000235243.2	997	4	-23	-703	0	0	multi-exon	FALSE	canonical	3	36	junction_2	80.2426874480715	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTATTGTTTGATCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	10502479	10479004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10480494_10494343_10494454_10494683_10494751_10502422
ENSMUSG00000024668.9_10479005_10502479_2	chr19	-	1849	5	NNC	ENSMUSG00000024668.9	novel	2025	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	94.3954448053506	892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTATTGTTTGATCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	10502479	10479004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_10479571_10479595_10480494_10494343_10494454_10494532_10494751_10502422
ENSMUSG00000024668.9_10479005_10502553_1	chr19	-	1772	5	NNC	ENSMUSG00000024668.9	novel	2025	5	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	94.9236535327207	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTATTGTTTGATCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	10502553	10479004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_10479571_10479595_10480494_10494343_10494454_10494683_10494751_10502422
ENSMUSG00000024668.9_10479005_10502553_2	chr19	-	1948	4	FSM	ENSMUSG00000024668.9	ENSMUST00000025570.8	2981	4	-74	1107	-7	0	multi-exon	FALSE	canonical	3	201	junction_1	14.7196014438797	1311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTATTGTTTGATCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	10502553	10479004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10502422
ENSMUSG00000024668.9_10479708_10502553_1	chr19	-	1245	4	FSM	ENSMUSG00000024668.9	ENSMUST00000025570.8	2981	4	-74	1810	-7	0	multi-exon	FALSE	canonical	3	201	junction_1	14.7196014438797	932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCATTGAGGCAAACTTTC	NA	False	NA	0	True	NA	NA	NA	10502553	10479707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10502422
ENSMUSG00000024668.9_10480302_10502479_1	chr19	-	577	4	FSM	ENSMUSG00000024668.9	ENSMUST00000025570.8	2981	4	0	2404	0	-105	multi-exon	FALSE	canonical	3	201	junction_1	14.7196014438797	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGGCCTCCTGCTTCTCC	NA	False	NA	NA	False	NA	NA	NA	10502479	10480301	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10502422
ENSMUSG00000024683.7_11747755_11752167_1	chr19	+	1005	4	FSM	ENSMUSG00000024683.7	ENSMUST00000167199.3	1162	4	0	157	0	10	multi-exon	FALSE	canonical	3	302	junction_3	22.4499443206436	4055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTCTCTTTGGTCAGTT	161	False	NA	35	True	ATTAAA	-23	NA	11747754	11752167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_11747889_11748165_11748232_11750238_11750388_11751511
ENSMUSG00000024691.14_12550887_12561466_1	chr19	+	319	3	ISM	ENSMUSG00000024691.14	ENSMUST00000025595.5	3267	4	0	5660	0	139	5prime_fragment	FALSE	canonical	3	71	junction_1	6.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGACTATTTCTCTCAG	NA	False	NA	NA	False	AATAAA	-5	NA	12550886	12561466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_12550945_12554453_12554535_12561286
ENSMUSG00000024725.14_18558173_18609124_1	chr19	-	1216	10	FSM	ENSMUSG00000024725.14	ENSMUST00000025631.7	2726	10	29	1481	-20	0	multi-exon	FALSE	canonical	3	989	junction_2	42.8315679128904	4682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTTTTGTGCTATCACT	NA	False	NA	-2	True	AATAAA	-21	NA	18609124	18558172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_18558693_18562005_18562108_18563910_18563990_18567068_18567119_18567764_18567873_18569946_18570001_18571219_18571284_18573714_18573766_18581529_18581577_18608983
ENSMUSG00000024725.14_18558356_18609187_1	chr19	-	1096	10	FSM	ENSMUSG00000024725.14	ENSMUST00000025631.7	2726	10	-34	1664	0	0	multi-exon	FALSE	canonical	3	989	junction_2	42.8315679128904	2466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATTGTAATAGTTTTTTT	NA	False	NA	-2	True	AATAAA	-34	NA	18609187	18558355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_18558693_18562005_18562108_18563910_18563990_18567068_18567119_18567764_18567873_18569946_18570001_18571219_18571284_18573714_18573766_18581529_18581577_18608983
ENSMUSG00000024732.8_10920164_10926617_1	chr19	-	1671	4	FSM	ENSMUSG00000024732.8	ENSMUST00000025639.7	3003	4	13	1319	-2	-1319	multi-exon	FALSE	canonical	3	231	junction_1	21.483844059096	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCTTCAGCTGTGAATT	NA	False	NA	-95	True	AAAACA	-7	NA	10926617	10920163	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641
ENSMUSG00000024732.8_10920164_10926617_2	chr19	-	1551	5	NNC	ENSMUSG00000024732.8	novel	3003	4	NA	NA	-2	-1319	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	114.6799895361	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCTTCAGCTGTGAATT	NA	False	NA	-95	True	AAAACA	-7	NA	10926617	10920163	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641_10926169_10926288
ENSMUSG00000024732.8_10920164_10926617_3	chr19	-	1553	5	NNC	ENSMUSG00000024732.8	novel	3003	4	NA	NA	-2	-1319	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	114.6799895361	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCTTCAGCTGTGAATT	NA	False	NA	-95	True	AAAACA	-7	NA	10926617	10920163	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641_10926165_10926282
ENSMUSG00000024735.14_10872641_10882896_1	chr19	+	2145	16	FSM	ENSMUSG00000024735.14	ENSMUST00000179297.3	6035	16	-137	4027	0	0	multi-exon	FALSE	canonical	3	14	junction_3	36.1106940146852	3153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCAGCTTCTTGTGTCTG	NA	False	NA	15	True	ATTAAA	-21	NA	10872640	10882896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876289_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
ENSMUSG00000024735.14_10872737_10882896_1	chr19	+	2049	16	FSM	ENSMUSG00000024735.14	ENSMUST00000179297.3	6035	16	-41	4027	0	0	multi-exon	FALSE	canonical	3	14	junction_3	36.1106940146852	3017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCAGCTTCTTGTGTCTG	NA	False	NA	15	True	ATTAAA	-21	NA	10872736	10882896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876289_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
ENSMUSG00000024735.14_10872737_10882896_2	chr19	+	1992	16	FSM	ENSMUSG00000024735.14	ENSMUST00000025642.14	2134	16	142	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	13.7346277707115	3033	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCAGCTTCTTGTGTCTG	NA	False	NA	15	True	ATTAAA	-21	NA	10872736	10882896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876346_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
ENSMUSG00000024735.14_10875109_10882896_1	chr19	+	346	2	NNC	ENSMUSG00000024735.14	novel	601	2	NA	NA	-900	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCAGCTTCTTGTGTCTG	NA	False	NA	15	True	ATTAAA	-21	NA	10875108	10882896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_10875116_10882557
ENSMUSG00000024740.11_10602098_10607186_1	chr19	+	1790	9	NNC	ENSMUSG00000024740.11	novel	1589	11	NA	NA	-313	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1122.81008384099	2514	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	NA	False	NA	59	True	AATAAA	-19	NA	10602097	10607186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605794_10605913_10606442
ENSMUSG00000024742.16_10176502_10181273_1	chr19	-	2182	2	FSM	ENSMUSG00000024742.16	ENSMUST00000025651.6	2341	2	159	0	-15	0	multi-exon	FALSE	canonical	3	832	junction_1	0	926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	2189	False	NA	NA	False	AATAAA	-14	NA	10181273	10176501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10178462_10181051
ENSMUSG00000024750.12_21253792_21258028_1	chr19	+	742	5	ISM	ENSMUSG00000024750.12	ENSMUST00000025659.12	2467	6	3182	1626	388	0	3prime_fragment	FALSE	canonical	3	378	junction_4	0.707106781186548	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTCCAGAGTTTTGCTT	NA	False	NA	NA	False	ATTAAA	-29	NA	21253791	21258028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_21253950_21254341_21254454_21255018_21255123_21256988_21257115_21257786
ENSMUSG00000024750.12_21253914_21258028_1	chr19	+	620	5	ISM	ENSMUSG00000024750.12	ENSMUST00000025659.12	2467	6	3304	1626	510	0	3prime_fragment	FALSE	canonical	3	378	junction_4	0.707106781186548	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTCCAGAGTTTTGCTT	NA	False	NA	NA	False	ATTAAA	-29	NA	21253913	21258028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_21253950_21254341_21254454_21255018_21255123_21256988_21257115_21257786
ENSMUSG00000024750.12_21253914_21259391_1	chr19	+	1983	5	ISM	ENSMUSG00000024750.12	ENSMUST00000025659.12	2467	6	3304	263	510	-263	3prime_fragment	FALSE	canonical	3	378	junction_4	0.707106781186548	175	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTCTTGTTTATTGGGTT	NA	False	NA	18	True	AATAAA	-18	NA	21253913	21259391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_21253950_21254341_21254454_21255018_21255123_21256988_21257115_21257786
ENSMUSG00000024758.16_7404383_7460637_1	chr19	-	1701	6	NNC	ENSMUSG00000024758.16	novel	4956	8	NA	NA	0	525	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	273.880265809715	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTAACTGCTGTACAC	8969	False	NA	NA	False	AATAAA	-32	NA	7460637	7404382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_7405241_7407115_7407208_7409330_7409401_7409816_7409956_7412295_7412504_7460303
ENSMUSG00000024758.16_7404383_7460637_3	chr19	-	1710	7	NNC	ENSMUSG00000024758.16	novel	4956	8	NA	NA	0	525	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	259.448774648613	1825	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTAACTGCTGTACAC	8969	False	NA	NA	False	AATAAA	-32	NA	7460637	7404382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_7405241_7407115_7407175_7408350_7408393_7409330_7409401_7409816_7409956_7412295_7412504_7460303
ENSMUSG00000024759.15_7471803_7511566_1	chr19	+	1969	13	FSM	ENSMUSG00000024759.15	ENSMUST00000025668.9	4368	13	0	2399	0	1	multi-exon	TRUE	canonical	3	31	junction_6	6.18409698788397	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTGGAAGCAGTTCT	NA	False	NA	NA	False	AATAAA	-33	NA	7471802	7511566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_7472027_7486712_7486928_7487347_7487492_7494242_7494348_7495910_7495962_7498151_7498209_7498474_7498568_7499433_7499573_7506306_7506435_7506972_7507030_7507884_7507957_7509380_7509813_7511314
ENSMUSG00000024764.11_7203038_7218399_1	chr19	-	3082	8	FSM	ENSMUSG00000024764.11	ENSMUST00000025675.11	3231	8	149	0	0	0	multi-exon	TRUE	canonical	3	441	junction_1	30.7431757816732	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTGGGATGGCATCCAG	NA	False	NA	-20	True	AATAAA	-16	NA	7218399	7203037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_7205457_7205716_7205795_7207086_7207171_7207312_7207472_7207552_7207649_7211468_7211522_7212427_7212524_7218302
ENSMUSG00000024767.12_7176211_7183635_1	chr19	-	1218	6	NIC	ENSMUSG00000024767.12	novel	1713	7	NA	NA	-36	-636	intron_retention	FALSE	canonical	3	1089	junction_1	77.0246713722298	2380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGAGTGTGCGCTTCCCT	NA	False	NA	-7	True	ATTAAA	-18	NA	7183635	7176210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_7176605_7176736_7176932_7177027_7177427_7181422_7181522_7181754_7181817_7183566
ENSMUSG00000024767.12_7176211_7183635_3	chr19	-	1011	7	NNC	ENSMUSG00000024767.12	novel	1713	7	NA	NA	-36	-636	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_5	428.009897341431	2561	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGAGTGTGCGCTTCCCT	NA	False	NA	-7	True	ATTAAA	-18	NA	7183635	7176210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_7176605_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181510_7181754_7181817_7183566
ENSMUSG00000024772.10_6326955_6348929_1	chr19	+	1956	5	FSM	ENSMUSG00000024772.10	ENSMUST00000025684.4	3353	5	200	1197	0	539	multi-exon	FALSE	canonical	3	357	junction_1	38.2687862363049	382	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTCTTTCTTGCCTCTTC	NA	False	NA	18	True	AATATA	-15	NA	6326954	6348929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6327409_6331247_6331346_6344243_6344657_6347562_6347728_6348103
ENSMUSG00000024780.8_28967767_28990319_1	chr19	+	1212	7	FSM	ENSMUSG00000024780.8	ENSMUST00000225310.2	4079	7	15	2852	0	733	multi-exon	FALSE	canonical	3	25	junction_6	62.7147421974203	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGATTTTTCAATTTCTT	3836	False	NA	NA	False	CATAAA	-13	NA	28967766	28990319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28990187
ENSMUSG00000024780.8_28967767_28993992_1	chr19	+	1667	7	FSM	ENSMUSG00000024780.8	ENSMUST00000050148.5	5179	7	-133	3645	0	0	multi-exon	FALSE	canonical	3	145	junction_6	22.9449825064702	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTGACCTACTTTACTAA	3836	False	NA	NA	False	AATAAA	-7	NA	28967766	28993992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28993405
ENSMUSG00000024780.8_28967885_28990319_1	chr19	+	1094	7	FSM	ENSMUSG00000024780.8	ENSMUST00000225310.2	4079	7	133	2852	0	733	multi-exon	FALSE	canonical	3	25	junction_6	62.7147421974203	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGATTTTTCAATTTCTT	3954	False	NA	NA	False	CATAAA	-13	NA	28967884	28990319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28990187
ENSMUSG00000024780.8_28967885_28994971_1	chr19	+	2528	7	FSM	ENSMUSG00000024780.8	ENSMUST00000050148.5	5179	7	-15	2666	0	979	multi-exon	FALSE	canonical	3	145	junction_6	22.9449825064702	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGCAGTGCTCACTGGCT	3954	False	NA	23	True	AATAAA	-17	NA	28967884	28994971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28993405
ENSMUSG00000024785.8_29078892_29121329_1	chr19	+	1772	9	FSM	ENSMUSG00000024785.8	ENSMUST00000064393.6	1803	9	117	-86	117	0	multi-exon	FALSE	canonical	3	369	junction_1	16.9958634673264	1883	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAATCTGGGATTTTATCT	NA	False	NA	113	True	NA	NA	NA	29078891	29121329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_29079041_29093122_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120541
ENSMUSG00000024786.10_6234418_6274255_1	chr19	+	1524	10	NIC	ENSMUSG00000024786.10	novel	1562	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	4.54062594260057	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACTGCCCTGAGGTTTA	8038	False	NA	10	True	AATAAA	-26	NA	6234417	6274255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_6234613_6256247_6256294_6261633_6261710_6262157_6262284_6263026_6263059_6263328_6263427_6265175_6265240_6271702_6271776_6272677_6272787_6273550
ENSMUSG00000024790.9_6166030_6168052_1	chr19	-	814	2	FSM	ENSMUSG00000024790.9	ENSMUST00000113533.3	1442	2	628	0	628	0	multi-exon	FALSE	canonical	3	283	junction_1	0	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAACAGGAACTTTTAGAC	NA	False	NA	-9	True	AATAAA	-25	NA	6168052	6166029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6166618_6167826
ENSMUSG00000024791.11_6135013_6141201_1	chr19	+	1418	6	FSM	ENSMUSG00000024791.11	ENSMUST00000025704.3	2024	6	0	606	0	-606	multi-exon	FALSE	canonical	3	368	junction_5	42.0218990527558	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTCCGTGTCTGTGCTCT	NA	False	NA	NA	False	NA	NA	NA	6135012	6141201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6135239_6135427_6135520_6136431_6136498_6136581_6136618_6140080_6140555_6140677
ENSMUSG00000024791.11_6135135_6141807_1	chr19	+	2025	5	ISM	ENSMUSG00000024791.11	ENSMUST00000025704.3	2024	6	122	0	122	0	intron_retention	FALSE	canonical	3	441	junction_2	20.5243757517738	1118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGCTTTTTATT	NA	False	NA	35	True	AATAAA	-20	NA	6135134	6141807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_6135239_6135427_6135520_6136431_6136498_6136581_6136618_6140080
ENSMUSG00000024792.10_6130795_6134723_1	chr19	-	1252	8	NIC	ENSMUSG00000024792.10	novel	1287	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_7	201.730978669866	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTTCTGAAGCAGCTTT	6690	False	NA	NA	False	AATAAA	-15	NA	6134723	6130794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134675
ENSMUSG00000024797.15_6118020_6127230_1	chr19	-	2496	10	FSM	ENSMUSG00000024797.15	ENSMUST00000025711.13	2675	10	31	148	0	0	multi-exon	FALSE	canonical	3	124	junction_7	16.3026923475166	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTCTTGCCTGCAGGGGC	1018	False	NA	-3	True	AATAAA	-18	NA	6127230	6118019	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6118406_6118884_6118973_6119055_6119178_6119494_6119714_6119887_6120104_6120468_6121187_6121295_6121516_6121591_6121739_6126392_6126523_6126980
ENSMUSG00000024799.17_6112851_6117857_1	chr19	-	1259	9	NIC	ENSMUSG00000024799.17	novel	1471	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_8	79.8254932649965	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTTCTTCTATCC	-6	True	NA	0	True	AATAAA	-15	NA	6117857	6112850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116724_6116997_6117053_6117698
ENSMUSG00000024799.17_6112851_6117857_2	chr19	-	1129	9	NIC	ENSMUSG00000024799.17	novel	1471	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_7	101.258873067993	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTTCTTCTATCC	-6	True	NA	0	True	AATAAA	-15	NA	6117857	6112850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116594_6116997_6117053_6117698
ENSMUSG00000024799.17_6116176_6117857_1	chr19	-	875	5	FSM	ENSMUSG00000024799.17	ENSMUST00000160354.8	1443	5	-51	619	0	0	multi-exon	FALSE	canonical	3	213	junction_4	26.5988721565408	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAATCTTGAGAGAGAGA	-6	True	NA	-27	True	AATAGA	-18	NA	6117857	6116175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
ENSMUSG00000024800.9_36061116_36081940_1	chr19	+	932	10	NNC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	0	62	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	333.766311387599	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGAAACCAACAGTCTATA	NA	False	NA	-55	True	AATAAA	-29	NA	36061115	36081940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077728_36078633_36078672_36079220_36079301_36081735
ENSMUSG00000024800.9_36061116_36082015_4	chr19	+	991	11	NNC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	0	137	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	317.67595124592	2515	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAGACTAACAGCTTA	NA	False	NA	20	True	AATAAA	-16	NA	36061115	36082015	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081742
ENSMUSG00000024800.9_36061116_36082015_5	chr19	+	988	10	NNC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	0	137	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	333.766311387599	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAGACTAACAGCTTA	NA	False	NA	20	True	AATAAA	-16	NA	36061115	36082015	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077709_36078633_36078672_36079220_36079301_36081735
ENSMUSG00000024800.9_36061116_36082015_6	chr19	+	949	11	NIC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	0	137	combination_of_known_junctions	FALSE	canonical	3	67	junction_7	297.230701644362	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAGACTAACAGCTTA	NA	False	NA	20	True	AATAAA	-16	NA	36061115	36082015	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077640_36078208_36078239_36078633_36078672_36079220_36079301_36081735
ENSMUSG00000024800.9_36061116_36082015_7	chr19	+	1140	11	NIC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	0	137	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	308.862186096	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAGACTAACAGCTTA	NA	False	NA	20	True	AATAAA	-16	NA	36061115	36082015	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_36061361_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081735
ENSMUSG00000024800.9_36061116_36082177_10	chr19	+	1302	11	NIC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	308.862186096	1036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTTTTAAATTTTACTA	NA	False	NA	NA	False	AATAAA	-26	NA	36061115	36082177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_36061361_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081735
ENSMUSG00000024800.9_36061116_36082177_6	chr19	+	1154	11	NNC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	317.083017520649	4425	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTTTTAAATTTTACTA	NA	False	NA	NA	False	AATAAA	-26	NA	36061115	36082177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_36061219_36062465_36062522_36064358_36064410_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081735
ENSMUSG00000024800.9_36061116_36082177_7	chr19	+	1153	11	NNC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	317.67595124592	4251	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTTTTAAATTTTACTA	NA	False	NA	NA	False	AATAAA	-26	NA	36061115	36082177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081742
ENSMUSG00000024800.9_36061116_36082177_8	chr19	+	1150	10	NNC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	333.766311387599	1072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTTTTAAATTTTACTA	NA	False	NA	NA	False	AATAAA	-26	NA	36061115	36082177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077709_36078633_36078672_36079220_36079301_36081735
ENSMUSG00000024800.9_36061116_36082177_9	chr19	+	1111	11	NIC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_7	297.230701644362	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTTTTAAATTTTACTA	NA	False	NA	NA	False	AATAAA	-26	NA	36061115	36082177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077640_36078208_36078239_36078633_36078672_36079220_36079301_36081735
ENSMUSG00000024805.17_36325937_36433604_1	chr19	+	1449	9	FSM	ENSMUSG00000024805.17	ENSMUST00000225920.2	6443	9	228	4766	0	0	multi-exon	FALSE	canonical	3	10	junction_1	36.9382931386928	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGCCAGCTTATTCTTG	NA	False	NA	6	True	AATAAA	-18	NA	36325936	36433604	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_36325970_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36433020
ENSMUSG00000024806.5_29681234_29685842_1	chr19	+	798	4	NNC	ENSMUSG00000024806.5	novel	906	5	NA	NA	5900	16	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	20.2374789822141	292	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTATCTGTCTGGGCAG	NA	False	NA	20	True	AATAAA	-11	NA	29681233	29685842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_29681401_29681868_29682117_29684207_29684322_29685573
ENSMUSG00000024806.5_29681234_29685847_1	chr19	+	652	4	NNC	ENSMUSG00000024806.5	novel	906	5	NA	NA	5900	21	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	19.7709101684492	298	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTCTGGGCAGTAATG	NA	False	NA	25	True	AATAAA	-16	NA	29681233	29685847	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_29681401_29682019_29682117_29684207_29684322_29685573
ENSMUSG00000024807.19_6097091_6103741_1	chr19	+	2978	16	FSM	ENSMUSG00000024807.19	ENSMUST00000138532.8	3464	16	485	1	0	0	multi-exon	FALSE	canonical	3	88	junction_11	13.9593059362642	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGTAGAACGTGTCACCT	1224	False	NA	12	True	AATAAA	-15	NA	6097090	6103741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6097159_6097946_6098096_6098304_6098398_6098484_6098638_6098724_6098774_6099179_6099284_6099800_6099928_6100021_6100122_6100199_6100266_6100354_6100472_6100551_6100716_6100970_6101100_6101184_6101341_6101422_6101610_6102357_6102510_6102577
ENSMUSG00000024811.12_36862885_36870280_1	chr19	+	2663	5	ISM	ENSMUSG00000024811.12	ENSMUST00000025729.12	6481	27	51253	597	4912	-597	3prime_fragment	FALSE	canonical	3	888	junction_3	109.879479430875	307	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGGTAGCATGGTAATT	NA	False	NA	25	True	AATAAA	-14	NA	36862884	36870280	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_36862958_36864465_36864572_36866108_36866296_36867291_36867449_36868140
ENSMUSG00000024816.13_5901314_5925267_1	chr19	-	2885	11	FSM	ENSMUSG00000024816.13	ENSMUST00000025728.13	4504	11	35	1584	0	-1584	multi-exon	FALSE	canonical	3	167	junction_1	18.6118241986109	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGTCTTTCCTATCACTG	4370	False	NA	-7	True	AATAAA	-14	NA	5925267	5901313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5902771_5906612_5906818_5912278_5912423_5913251_5913376_5915096_5915322_5919464_5919632_5919763_5919823_5920038_5920141_5923196_5923365_5924737_5924823_5925118
ENSMUSG00000024824.8_4242158_4245419_1	chr19	-	1380	7	Fusion	ENSMUSG00000117839.2_ENSMUSG00000024824.8	novel	2101	10	NA	NA	-2638	-50	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4883	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTCCTTCCGGCCTGG	NA	False	NA	NA	False	NA	NA	NA	4245419	4242157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr19_-_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244698_4244777_4244906_4244980
ENSMUSG00000024824.8_4242158_4245419_2	chr19	-	1372	7	Fusion	ENSMUSG00000117839.2_ENSMUSG00000024824.8	novel	2101	10	NA	NA	-2638	-50	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2769	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTCCTTCCGGCCTGG	NA	False	NA	NA	False	NA	NA	NA	4245419	4242157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr19_-_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244690_4244777_4244906_4244980
ENSMUSG00000024824.8_4242158_4245419_3	chr19	-	1460	6	Fusion	ENSMUSG00000117839.2_ENSMUSG00000024824.8	novel	241	2	NA	NA	-2638	-50	intron_retention	FALSE	non_canonical	0	0	junction_1	0	957	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTCCTTCCGGCCTGG	NA	False	NA	NA	False	NA	NA	NA	4245419	4242157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr19_-_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244906_4244980
ENSMUSG00000024824.8_4242158_4245419_4	chr19	-	1383	7	Fusion	ENSMUSG00000117839.2_ENSMUSG00000024824.8	novel	2101	10	NA	NA	-2638	-50	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10510	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTCCTTCCGGCCTGG	NA	False	NA	NA	False	NA	NA	NA	4245419	4242157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr19_-_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244690_4244770_4244895_4244965
ENSMUSG00000024824.8_4242158_4245419_5	chr19	-	1387	7	Fusion	ENSMUSG00000117839.2_ENSMUSG00000024824.8	novel	2101	10	NA	NA	-2638	-50	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11917	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTCCTTCCGGCCTGG	NA	False	NA	NA	False	NA	NA	NA	4245419	4242157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr19_-_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244698_4244770_4244906_4244980
ENSMUSG00000024824.8_4242158_4245419_6	chr19	-	1310	7	Fusion	ENSMUSG00000117839.2_ENSMUSG00000024824.8	novel	2101	10	NA	NA	-2638	-50	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1604	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTCCTTCCGGCCTGG	NA	False	NA	NA	False	NA	NA	NA	4245419	4242157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr19_-_4242271_4242743_4242876_4243020_4243252_4243834_4243871_4244465_4244690_4244770_4244906_4244980
ENSMUSG00000024824.8_4242158_4245419_7	chr19	-	1374	7	Fusion	ENSMUSG00000117839.2_ENSMUSG00000024824.8	novel	2101	10	NA	NA	-2638	-50	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11177	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTCCTTCCGGCCTGG	NA	False	NA	NA	False	NA	NA	NA	4245419	4242157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr19_-_4242271_4242748_4242876_4243020_4243252_4243765_4243871_4244465_4244690_4244770_4244906_4244980
ENSMUSG00000024824.8_4242158_4245419_8	chr19	-	1370	7	Fusion	ENSMUSG00000117839.2_ENSMUSG00000024824.8	novel	2101	10	NA	NA	-2638	-50	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3783	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTCCTTCCGGCCTGG	NA	False	NA	NA	False	NA	NA	NA	4245419	4242157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr19_-_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244690_4244770_4244906_4244989
ENSMUSG00000024824.8_4245195_4251606_1	chr19	-	2047	11	NNC	ENSMUSG00000024824.8	novel	2081	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	131.061855625502	923	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGTGTGTTCCCCGTGAC	6027	False	NA	0	True	AATAAA	-15	NA	4251606	4245194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_4246082_4246179_4246382_4247111_4247245_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
ENSMUSG00000024824.8_4245706_4251606_1	chr19	-	1541	11	FSM	ENSMUSG00000024824.8	ENSMUST00000025740.8	2081	11	29	511	0	-487	multi-exon	FALSE	canonical	3	334	junction_4	40.0660704337224	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTCAGTCTCCTGCCT	6027	False	NA	-5	True	AATACA	-26	NA	4251606	4245705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
ENSMUSG00000024826.16_5956595_5962820_1	chr19	-	278	3	ISM	ENSMUSG00000024826.16	ENSMUST00000142995.8	725	4	-23	1441	0	-1030	5prime_fragment	FALSE	canonical	3	781	junction_2	34.5	1912	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCTGAGGATCCCAGGCT	1351	False	NA	NA	False	AAAAAG	-13	NA	5962820	5956594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_5956660_5957028_5957190_5962768
ENSMUSG00000024830.18_4206791_4213299_1	chr19	-	1731	15	FSM	ENSMUSG00000024830.18	ENSMUST00000025749.15	4586	15	54	2801	0	0	multi-exon	FALSE	canonical	2	38	junction_6	17.8245416691225	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGGCTTTTGCCGGACTC	2803	False	NA	1	True	AGTAAA	-17	NA	4213299	4206790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208717_4208827_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
ENSMUSG00000024835.16_4198653_4204034_1	chr19	+	1582	10	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_9	197.70466813525	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3610	False	NA	18	True	AATAAA	-19	NA	4198652	4204034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203595
ENSMUSG00000024835.16_4198653_4204034_2	chr19	+	1589	10	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_9	212.641993227938	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3610	False	NA	18	True	AATAAA	-19	NA	4198652	4204034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_4198736_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203595
ENSMUSG00000024835.16_4198653_4204034_3	chr19	+	1846	11	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	402	junction_1	75.9439925208044	1776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3610	False	NA	18	True	AATAAA	-19	NA	4198652	4204034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
ENSMUSG00000024835.16_4198653_4204034_4	chr19	+	1839	11	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	140.317354593079	1721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3610	False	NA	18	True	AATAAA	-19	NA	4198652	4204034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_4198722_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
ENSMUSG00000024837.16_25483070_25581693_1	chr19	+	2252	5	FSM	ENSMUSG00000024837.16	ENSMUST00000025755.11	2340	5	88	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	4.08503365959205	972	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTGTGTGTATATTTG	NA	False	NA	12	True	AATAAA	-20	NA	25483069	25581693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_25483566_25487043_25487228_25523182_25523467_25537230_25537376_25580550
ENSMUSG00000024841.9_5416769_5420276_1	chr19	+	1278	6	FSM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	0	1278	0	-1278	multi-exon	TRUE	canonical	3	703	junction_2	59.7581793564697	6610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGTGTCTGAGTGGCTC	1792	False	NA	22	True	ATTAAA	-22	NA	5416768	5420276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
ENSMUSG00000024841.9_5416872_5420276_1	chr19	+	1175	6	FSM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	103	1278	-101	-1278	multi-exon	FALSE	canonical	3	703	junction_2	59.7581793564697	6515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGTGTCTGAGTGGCTC	1895	False	NA	22	True	ATTAAA	-22	NA	5416871	5420276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
ENSMUSG00000024841.9_5417050_5420276_1	chr19	+	778	5	NIC	ENSMUSG00000024841.9	novel	2556	6	NA	NA	0	-1278	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	342.275017347162	497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGTGTCTGAGTGGCTC	2073	False	NA	22	True	ATTAAA	-22	NA	5417049	5420276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_5417239_5418449_5418559_5418644_5418754_5418922_5418971_5419953
ENSMUSG00000024841.9_5417050_5420276_2	chr19	+	991	6	NNC	ENSMUSG00000024841.9	novel	2556	6	NA	NA	0	-1278	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	314.004076406661	1469	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGTGTCTGAGTGGCTC	2073	False	NA	22	True	ATTAAA	-22	NA	5417049	5420276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_5417239_5418091_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
ENSMUSG00000024841.9_5417050_5420276_3	chr19	+	997	6	FSM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	281	1278	0	-1278	multi-exon	FALSE	canonical	3	703	junction_2	59.7581793564697	5584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGTGTCTGAGTGGCTC	2073	False	NA	22	True	ATTAAA	-22	NA	5417049	5420276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
ENSMUSG00000024844.16_5414668_5416391_1	chr19	-	848	3	NNC	ENSMUSG00000024844.16	novel	758	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	746	junction_2	2648	21038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTGTTCTGTGTCAG	8986	False	NA	-8	True	AATAAA	-15	NA	5416391	5414667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_5415187_5415845_5415985_5416201
ENSMUSG00000024844.16_5414668_5416673_1	chr19	-	597	2	FSM	ENSMUSG00000024844.16	ENSMUST00000237704.2	743	2	146	0	-39	0	multi-exon	FALSE	canonical	3	1029	junction_1	0	1814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTGTTCTGTGTCAG	8704	False	NA	-8	True	AATAAA	-15	NA	5416673	5414667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5415187_5416595
ENSMUSG00000024844.16_5414668_5416673_2	chr19	-	753	3	NNC	ENSMUSG00000024844.16	novel	1261	3	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3021	35360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTGTTCTGTGTCAG	8704	False	NA	-8	True	AATAAA	-15	NA	5416673	5414667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_5415187_5415845_5416002_5416595
ENSMUSG00000024844.16_5414668_5416673_3	chr19	-	736	3	FSM	ENSMUSG00000024844.16	ENSMUST00000025762.16	1261	3	523	2	-39	0	multi-exon	FALSE	canonical	3	4588	junction_2	727	37819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTGTTCTGTGTCAG	8704	False	NA	-8	True	AATAAA	-15	NA	5416673	5414667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5415187_5415845_5415985_5416595
ENSMUSG00000024845.20_4175989_4181734_1	chr19	+	889	7	FSM	ENSMUSG00000024845.20	ENSMUST00000139987.10	1488	7	29	570	0	0	multi-exon	FALSE	canonical	3	36	junction_2	239.625691907655	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCACTTTCCTGGGCC	4400	False	NA	NA	False	AATAAA	-24	NA	4175988	4181734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4176200_4177055_4177121_4177575_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
ENSMUSG00000024845.20_4175989_4181734_2	chr19	+	1047	6	NIC	ENSMUSG00000024845.20	novel	937	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	163	junction_2	211.997735836966	743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCACTTTCCTGGGCC	4400	False	NA	NA	False	AATAAA	-24	NA	4175988	4181734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_4176200_4177055_4177132_4177548_4177836_4181029_4181075_4181227_4181282_4181360
ENSMUSG00000024845.20_4176147_4181734_1	chr19	+	758	7	FSM	ENSMUSG00000024845.20	ENSMUST00000140267.10	938	7	188	-8	158	0	multi-exon	FALSE	canonical	3	568	junction_2	70.8411760364142	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCACTTTCCTGGGCC	4558	False	NA	NA	False	AATAAA	-24	NA	4176146	4181734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
ENSMUSG00000024847.16_4164464_4171575_1	chr19	-	1253	6	NNC	ENSMUSG00000024847.16	novel	1261	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	114.62704741901	1353	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCTTTGCAGAACTAATC	3902	False	NA	-21	True	TATAAA	-17	NA	4171575	4164463	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_4164797_4165080_4165223_4165319_4165489_4165981_4166171_4168086_4168267_4171335
ENSMUSG00000024853.11_5323960_5324915_1	chr19	-	692	2	ISM	ENSMUSG00000024853.11	ENSMUST00000237781.2	1894	8	9521	0	9521	0	3prime_fragment	FALSE	canonical	3	3092	junction_1	0	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	NA	False	NA	-25	True	AATAAA	-18	NA	5324915	5323959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_5324556_5324819
ENSMUSG00000024853.11_5323960_5334164_1	chr19	-	1622	8	FSM	ENSMUSG00000024853.11	ENSMUST00000237781.2	1894	8	272	0	272	0	multi-exon	TRUE	canonical	3	1640	junction_7	472.274435955561	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	NA	False	NA	-25	True	AATAAA	-18	NA	5334164	5323959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885
ENSMUSG00000024853.11_5324334_5324915_1	chr19	-	318	2	ISM	ENSMUSG00000024853.11	ENSMUST00000237781.2	1894	8	9521	374	9521	-374	3prime_fragment	FALSE	canonical	3	3092	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGAATACAGGCGCTCTT	NA	False	NA	-28	True	AATAAA	-17	NA	5324915	5324333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_5324556_5324819
ENSMUSG00000024853.11_5324334_5345450_1	chr19	-	2815	21	FSM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	33	374	-14	-374	multi-exon	FALSE	canonical	3	1448	junction_15	340.757138589935	1091	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGAATACAGGCGCTCTT	3899	False	NA	-28	True	AATAAA	-17	NA	5345450	5324333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
ENSMUSG00000024856.11_4147401_4149011_1	chr19	+	855	4	FSM	ENSMUSG00000024856.11	ENSMUST00000025779.11	1080	4	219	6	0	1	multi-exon	FALSE	canonical	3	620	junction_3	36.1754981536767	838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTCAGCCTTTCTGTGT	7095	False	NA	28	True	AATAAA	-17	NA	4147400	4149011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4147508_4147816_4147918_4148004_4148138_4148497
ENSMUSG00000024863.7_30215332_30217087_1	chr19	+	819	3	NNC	ENSMUSG00000024863.7	novel	1089	6	NA	NA	4990	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0.5	121	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTTGTGCTCTGTGGGG	NA	False	NA	NA	False	AATAAA	-22	NA	30215331	30217087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_30215545_30215786_30215856_30216550
ENSMUSG00000024863.7_30215437_30217087_1	chr19	+	714	3	NNC	ENSMUSG00000024863.7	novel	1089	6	NA	NA	5095	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0.5	97	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTTGTGCTCTGTGGGG	NA	False	NA	NA	False	AATAAA	-22	NA	30215436	30217087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_30215545_30215786_30215856_30216550
ENSMUSG00000024866.11_4038343_4040007_1	chr19	+	628	3	ISM	ENSMUSG00000024866.11	ENSMUST00000054030.8	1505	6	1682	0	1140	0	3prime_fragment	FALSE	canonical	3	46	junction_1	0	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACAGTTCTTGTTCTTTG	NA	False	NA	5	True	TATAAA	-19	NA	4038342	4040007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_4038506_4038605_4038716_4039652
ENSMUSG00000024870.7_5149233_5157007_1	chr19	-	1810	6	NNC	ENSMUSG00000024870.7	novel	1913	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	452.316526339686	1182	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGGTGACTGAGTGTGG	1594	False	NA	0	True	AATAAA	-43	NA	5157007	5149232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_5150591_5150694_5150827_5154668_5154765_5154860_5154957_5155205_5155279_5156952
ENSMUSG00000024875.6_5138588_5142533_1	chr19	+	1097	8	FSM	ENSMUSG00000024875.6	ENSMUST00000025811.6	1488	8	15	376	0	0	multi-exon	FALSE	canonical	3	484	junction_7	32.2509294281512	3603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTTGACCCTGGTTCC	NA	False	NA	26	True	NA	NA	NA	5138587	5142533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5140031_5140111_5141395_5141454_5141568_5141725_5142156_5142251_5142329
ENSMUSG00000024878.10_24897791_24938878_1	chr19	-	1331	15	FSM	ENSMUSG00000024878.10	ENSMUST00000025815.10	1929	15	87	511	0	-511	multi-exon	FALSE	canonical	3	171	junction_14	17.2858618647773	764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATCCTCTGGAGGTTTTT	NA	False	NA	-32	True	AGTAAA	-32	NA	24938878	24897790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_24898067_24898384_24898515_24899960_24900027_24900119_24900189_24905690_24905740_24909027_24909085_24915759_24915805_24918112_24918200_24920046_24920094_24925432_24925471_24926565_24926626_24930623_24930716_24932699_24932797_24935267_24935355_24938747
ENSMUSG00000024878.10_24897791_24938965_1	chr19	-	1418	15	FSM	ENSMUSG00000024878.10	ENSMUST00000025815.10	1929	15	0	511	0	-511	multi-exon	FALSE	canonical	3	171	junction_14	17.2858618647773	891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATCCTCTGGAGGTTTTT	NA	False	NA	-32	True	AGTAAA	-32	NA	24938965	24897790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_24898067_24898384_24898515_24899960_24900027_24900119_24900189_24905690_24905740_24909027_24909085_24915759_24915805_24918112_24918200_24920046_24920094_24925432_24925471_24926565_24926626_24930623_24930716_24932699_24932797_24935267_24935355_24938747
ENSMUSG00000024889.6_4672619_4675648_1	chr19	-	1418	8	NIC	ENSMUSG00000024889.6	novel	1455	8	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_2	137.716804956211	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTTGGAACCTTGGGAC	NA	False	NA	-9	True	ATTAAA	-21	NA	4675648	4672618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_4673271_4673528_4673605_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675121_4675220_4675324_4675460
ENSMUSG00000024902.6_5012175_5014976_1	chr19	+	994	5	FSM	ENSMUSG00000024902.6	ENSMUST00000025836.6	3045	5	0	2051	0	4	multi-exon	FALSE	canonical	3	572	junction_2	14.5859521458148	3874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCAGCTTCTCTCCTGAG	3543	False	NA	14	True	AATAAA	-17	NA	5012174	5014976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5012544_5012906_5013003_5013353_5013448_5013533_5013694_5014701
ENSMUSG00000024902.6_5012391_5014976_1	chr19	+	778	5	FSM	ENSMUSG00000024902.6	ENSMUST00000025836.6	3045	5	216	2051	0	4	multi-exon	FALSE	canonical	3	572	junction_2	14.5859521458148	3666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCAGCTTCTCTCCTGAG	3759	False	NA	14	True	AATAAA	-17	NA	5012390	5014976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5012544_5012906_5013003_5013353_5013448_5013533_5013694_5014701
ENSMUSG00000024906.11_5532860_5538044_1	chr19	-	1777	15	ISM	ENSMUSG00000024906.11	ENSMUST00000124334.8	2067	16	386	0	0	0	intron_retention	FALSE	canonical	3	83	junction_4	10.1992896911541	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGGTCCTTCTGAAAT	NA	False	NA	2	True	AATAAA	-39	NA	5538044	5532859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_5533058_5533135_5533220_5533482_5533587_5533662_5533792_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789
ENSMUSG00000024910.6_5510657_5515080_1	chr19	-	1218	10	NIC	ENSMUSG00000024910.6	novel	1496	9	NA	NA	1273	4414	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1037	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGCGACTTCCGGGAGT	NA	False	NA	NA	False	NA	NA	NA	5515080	5510656	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513354_5513631_5513741_5513814_5513879_5514156_5514244_5514361_5514460_5514952
ENSMUSG00000024911.8_5510657_5515080_1	chr19	+	1475	9	NIC	ENSMUSG00000024911.8	novel	1209	10	NA	NA	0	1	intron_retention	FALSE	canonical	3	126	junction_5	11.4455231422596	918	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGTCCTTGTTCCAGGT	NA	False	NA	18	True	AATAAA	-18	NA	5510656	5515080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513333_5513631_5513741_5513814_5514244_5514361_5514460_5514952
ENSMUSG00000024914.17_5472837_5474807_1	chr19	-	794	7	FSM	ENSMUSG00000024914.17	ENSMUST00000025853.16	992	7	200	-2	0	0	multi-exon	TRUE	canonical	3	999	junction_1	76.7282361469506	711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTTTGGTTTCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	5474807	5472836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5473054_5473358_5473448_5473587_5473682_5473799_5473920_5474209_5474304_5474388_5474462_5474700
ENSMUSG00000024921.18_26693284_26755675_1	chr19	+	2045	9	NIC	ENSMUSG00000024921.18	novel	876	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	11.1067265654647	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTGGTGTTGGTACTTT	NA	False	NA	17	True	AATAAA	-18	NA	26693283	26755675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_26693389_26693514_26693593_26698128_26698348_26729223_26729442_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
ENSMUSG00000024925.12_5651915_5652964_1	chr19	+	601	4	NNC	ENSMUSG00000024925.12	novel	1126	4	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	110.671686633132	2918	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGAGTCTGTGGGCACC	5059	False	NA	6	True	AATAAA	-15	NA	5651914	5652964	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_5652109_5652228_5652403_5652477_5652598_5652851
ENSMUSG00000024925.12_5651915_5652964_2	chr19	+	609	4	FSM	ENSMUSG00000024925.12	ENSMUST00000025864.11	1126	4	14	503	0	2	multi-exon	FALSE	canonical	3	228	junction_3	35.9845645921816	3258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGAGTCTGTGGGCACC	5059	False	NA	6	True	AATAAA	-15	NA	5651914	5652964	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5652109_5652220_5652403_5652477_5652598_5652851
ENSMUSG00000024925.12_5651915_5653150_1	chr19	+	795	4	FSM	ENSMUSG00000024925.12	ENSMUST00000025864.11	1126	4	14	317	0	184	multi-exon	FALSE	canonical	3	228	junction_3	35.9845645921816	3324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTCCTGTACAGAATGCT	5059	False	NA	NA	False	TATAAA	-18	NA	5651914	5653150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5652109_5652220_5652403_5652477_5652598_5652851
ENSMUSG00000024925.12_5653044_5660073_1	chr19	+	1960	14	NIC	ENSMUSG00000024925.12	novel	1126	4	NA	NA	606	3026	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACTTCCGGCCCCTCTGG	6188	False	NA	NA	False	NA	NA	NA	5653043	5660073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5658829_5658986_5659263_5659401_5659490_5659560_5659879_5659947_5660045
ENSMUSG00000024925.12_5653044_5660073_2	chr19	+	1804	13	NIC	ENSMUSG00000024925.12	novel	1126	4	NA	NA	606	3026	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACTTCCGGCCCCTCTGG	6188	False	NA	NA	False	NA	NA	NA	5653043	5660073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879_5659947_5660045
ENSMUSG00000024926.11_5653044_5660073_1	chr19	-	2059	13	ISM	ENSMUSG00000024926.11	ENSMUST00000113641.4	2154	14	192	2	-1	0	intron_retention	FALSE	canonical	3	118	junction_10	98.9692362414817	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTATCAGGAGTTCTTAC	3632	False	NA	-5	True	AATAAA	-16	NA	5660073	5653043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5658829_5658986_5659263_5659401_5659490_5659560_5659879
ENSMUSG00000024927.9_5687747_5698158_1	chr19	+	2480	11	FSM	ENSMUSG00000024927.9	ENSMUST00000025867.6	2716	11	236	0	0	0	multi-exon	FALSE	canonical	3	73	junction_5	8.59069263796581	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGAGAGTAGCTGTCTTT	NA	False	NA	10	True	AATAAA	-16	NA	5687746	5698158	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5687870_5688459_5688487_5688578_5688731_5688882_5689032_5689886_5689979_5690330_5690463_5691208_5691314_5691491_5691705_5695352_5695434_5695540_5695616_5696827
ENSMUSG00000024940.12_5808455_5821411_1	chr19	+	2619	17	NIC	ENSMUSG00000024940.12	novel	2099	9	NA	NA	895	12851	intron_retention	FALSE	non_canonical	0	0	junction_1	0	187	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCCGGGGCGGGGCGGGGC	4686	False	NA	NA	False	NA	NA	NA	5808454	5821411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_5808725_5808827_5808889_5808967_5809175_5809298_5809371_5809692_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
ENSMUSG00000024942.20_6038574_6065236_1	chr19	-	3060	21	NNC	ENSMUSG00000024942.20	novel	3062	22	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	51.2800887284724	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGTCTCTGGGTGTTA	2594	False	NA	-7	True	AATAAA	-13	NA	6065236	6038573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6039418_6040021_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6047709_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326_6061461_6063618_6063738_6064025_6064096_6064230_6064499_6065135
ENSMUSG00000024943.10_23186099_23234890_1	chr19	-	2415	18	ISM	ENSMUSG00000024943.10	ENSMUST00000226111.2	3265	24	15073	0	6340	0	3prime_fragment	FALSE	canonical	2	185	junction_5	80.0723721085276	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAGAAAGATTGGTTAT	NA	False	NA	-8	True	AATAAA	-17	NA	23234890	23186098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192005_23192105_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851
ENSMUSG00000024943.10_23207668_23234890_1	chr19	-	1452	10	NNC	ENSMUSG00000024943.10	novel	5683	25	NA	NA	6340	-15569	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_1	128.249756335051	1088	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTTCTTTCCTGCATTTT	NA	False	NA	NA	False	AATAAA	-6	NA	23234890	23207667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_23207912_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851
ENSMUSG00000024944.7_6184416_6191170_1	chr19	-	712	4	NIC	ENSMUSG00000024944.7	novel	2305	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	5	junction_2	323.621521053358	154	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTGGCTGAGCCATTTG	NA	False	NA	-11	True	AATAAA	-15	NA	6191170	6184415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_6184832_6186008_6186090_6187759_6187871_6191066
ENSMUSG00000024944.7_6184416_6191170_2	chr19	-	550	4	NNC	ENSMUSG00000024944.7	novel	2305	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	357.114360767901	99	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTGGCTGAGCCATTTG	NA	False	NA	-11	True	AATAAA	-15	NA	6191170	6184415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6184661_6187580_6187671_6187759_6187871_6191066
ENSMUSG00000024944.7_6184416_6191170_3	chr19	-	866	5	NNC	ENSMUSG00000024944.7	novel	1286	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	321.997185546706	6562	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTGGCTGAGCCATTTG	NA	False	NA	-11	True	AATAAA	-15	NA	6191170	6184415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6184823_6186008_6186090_6187507_6187671_6187759_6187871_6191066
ENSMUSG00000024944.7_6187174_6191170_1	chr19	-	537	4	NNC	ENSMUSG00000024944.7	novel	2305	4	NA	NA	0	326	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	356.173490809683	60	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAAGACTTGTCTTGTTG	NA	False	NA	-2	True	NA	NA	NA	6191170	6187173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6187333_6187507_6187671_6187759_6187871_6191066
ENSMUSG00000024944.7_6187174_6191170_2	chr19	-	712	3	ISM	ENSMUSG00000024944.7	ENSMUST00000134821.2	2305	4	0	2770	0	326	5prime_fragment	FALSE	canonical	3	728	junction_2	28	302	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAAGACTTGTCTTGTTG	NA	False	NA	-2	True	NA	NA	NA	6191170	6187173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_6187671_6187759_6187871_6191066
ENSMUSG00000024949.18_6413952_6426067_1	chr19	+	2123	13	NIC	ENSMUSG00000024949.18	novel	4353	13	NA	NA	0	257	combination_of_known_junctions	FALSE	canonical	3	160	junction_10	310.864777229943	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGTTGGTCTCTTATAAA	834	False	NA	42	True	AATATA	-14	NA	6413951	6426067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424583_6424639_6424748_6424929_6425687
ENSMUSG00000024949.18_6413952_6426067_2	chr19	+	2128	13	FSM	ENSMUSG00000024949.18	ENSMUST00000131252.8	4353	13	232	1993	0	257	multi-exon	FALSE	canonical	3	714	junction_12	157.964724437663	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGTTGGTCTCTTATAAA	834	False	NA	42	True	AATATA	-14	NA	6413951	6426067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6425687
ENSMUSG00000024949.18_6413952_6427226_1	chr19	+	2644	13	NIC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	160	junction_10	355.987622678093	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	834	False	NA	15	True	AATAAA	-15	NA	6413951	6427226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424583_6424639_6424748_6424929_6426325
ENSMUSG00000024949.18_6413952_6427226_2	chr19	+	570	3	NNC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	606	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	834	False	NA	15	True	AATAAA	-15	NA	6413951	6427226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_6414149_6415693_6415747_6426906
ENSMUSG00000024949.18_6422618_6427226_1	chr19	+	1638	6	ISM	ENSMUSG00000024949.18	ENSMUST00000113489.8	2863	13	8869	7	175	0	3prime_fragment	FALSE	canonical	3	98	junction_3	473.250208663451	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	3846	False	NA	15	True	AATAAA	-15	NA	6422617	6427226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_6422656_6423602_6423784_6424039_6424318_6424578_6424639_6424748_6424929_6426325
ENSMUSG00000024953.18_6884074_6887474_1	chr19	-	823	6	NNC	ENSMUSG00000024953.18	novel	1262	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_5	187.679514065867	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGTACAGGGTTGTCT	NA	False	NA	-9	True	AATAAA	-21	NA	6887474	6884073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6884320_6884433_6884496_6884609_6884649_6884909_6885042_6885349_6885485_6887265
ENSMUSG00000024955.16_6887532_6888396_1	chr19	-	568	4	NIC	ENSMUSG00000024955.16	novel	1975	6	NA	NA	10023	813	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	6640	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCCGGAACCGGAAGGAGT	NA	False	NA	NA	False	NA	NA	NA	6888396	6887531	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_6887631_6887730_6887833_6887951_6888042_6888119
ENSMUSG00000024957.10_6906085_6911582_1	chr19	-	866	3	NNC	ENSMUSG00000024957.10	novel	600	2	NA	NA	299	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	0.5	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTGTGTTAAGTTAGTT	NA	False	NA	NA	False	TTTAAA	-4	NA	6911582	6906084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6906560_6910070_6910337_6911457
ENSMUSG00000024957.10_6906085_6911881_1	chr19	-	907	3	NIC	ENSMUSG00000024957.10	novel	600	2	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	1.5	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTGTGTTAAGTTAGTT	9938	False	NA	NA	False	TTTAAA	-4	NA	6911881	6906084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_6906560_6910070_6910337_6911715
ENSMUSG00000024958.14_6915438_6918847_1	chr19	-	2131	7	FSM	ENSMUSG00000024958.14	ENSMUST00000166115.9	1858	7	-286	13	0	0	multi-exon	FALSE	canonical	3	22	junction_3	2.47767812455308	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTCCTGTCACTCGTCT	6527	False	NA	-12	True	AATAAA	-19	NA	6918847	6915437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6915898_6916123_6916243_6916379_6916509_6916628_6916779_6916896_6917123_6917719_6917770_6917850
ENSMUSG00000024959.15_6919932_6929261_1	chr19	+	927	4	FSM	ENSMUSG00000024959.15	ENSMUST00000113423.10	990	4	63	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	15.9234278833282	845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCGCCTCTATCCTTCG	9384	False	NA	10	True	AATAAA	-15	NA	6919931	6929261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6919993_6920234_6920415_6928007_6928199_6928766
ENSMUSG00000024962.14_6959841_6962747_1	chr19	-	414	2	ISM	ENSMUSG00000024962.14	ENSMUST00000130048.8	1158	7	2250	0	1761	0	3prime_fragment	FALSE	canonical	3	317	junction_1	0	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTGCTTCTGTCATTGT	7030	False	NA	-1	True	GATAAA	-17	NA	6962747	6959840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_6960236_6962728
ENSMUSG00000024963.13_6965279_6969871_1	chr19	-	909	5	NIC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	88.1061149977685	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9276	False	NA	-4	True	AATAAA	-17	NA	6969871	6965278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_6965477_6965556_6965644_6967048_6967234_6968085_6968180_6969526
ENSMUSG00000024963.13_6965279_6969871_2	chr19	-	1167	5	NIC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	188	junction_2	20.6942020865749	1308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9276	False	NA	-4	True	AATAAA	-17	NA	6969871	6965278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_6965477_6965556_6965644_6966790_6967234_6968085_6968180_6969526
ENSMUSG00000024963.13_6965279_6969942_1	chr19	-	869	7	NNC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_6	60.0194412947449	732	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9943	False	NA	-4	True	AATAAA	-17	NA	6969942	6965278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969526_6969641_6969916
ENSMUSG00000024965.10_6973540_6976412_1	chr19	-	1053	7	NNC	ENSMUSG00000024965.10	novel	2856	14	NA	NA	20301	2786	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	248	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGATCCGGACCTGAACACG	9040	False	NA	NA	False	NA	NA	NA	6976412	6973539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876_6975934_6976073_6976137_6976259
ENSMUSG00000024965.10_6973540_6976412_2	chr19	-	1022	8	NNC	ENSMUSG00000024965.10	novel	2856	14	NA	NA	20301	2786	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	146	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGATCCGGACCTGAACACG	9040	False	NA	NA	False	NA	NA	NA	6976412	6973539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6973745_6973823_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876_6975934_6976025_6976137_6976259
ENSMUSG00000024965.10_6976347_6977331_1	chr19	-	757	3	NNC	ENSMUSG00000024965.10	novel	2988	14	NA	NA	19382	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	9.5	165	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATCTTTCTTCTTCCTCCT	8121	False	NA	-8	True	AATAAA	-17	NA	6977331	6976346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6976889_6977006_6977149_6977258
ENSMUSG00000024966.10_6998070_7003718_1	chr19	-	963	6	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	13617	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1348.29468589029	11668	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	NA	False	NA	-8	True	AATAAA	-29	NA	7003718	6998069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6998540_6999017_6999191_6999399_6999499_6999639_6999677_7002682_7002808_7003659
ENSMUSG00000024966.10_6998070_7017335_1	chr19	-	2106	14	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	914.822723474125	15118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3763	False	NA	-8	True	AATAAA	-29	NA	7017335	6998069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003751_7005991_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
ENSMUSG00000024966.10_6998070_7017335_2	chr19	-	2104	13	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	940.793500042503	15052	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3763	False	NA	-8	True	AATAAA	-29	NA	7017335	6998069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_7002649_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
ENSMUSG00000024968.15_7244690_7252590_1	chr19	+	2351	13	NIC	ENSMUSG00000024968.15	novel	2823	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	300.802676184904	765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCTTCCATGTGTGCTG	NA	False	NA	22	True	AATAAA	-17	NA	7244689	7252590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_7244790_7246215_7246454_7247129_7247187_7247465_7247547_7247918_7247972_7248062_7248225_7248334_7248460_7248557_7248628_7248703_7248920_7250464_7250543_7251197_7251256_7251384_7251615_7251707
ENSMUSG00000024969.16_7254124_7260543_1	chr19	-	1401	6	ISM	ENSMUSG00000024969.16	ENSMUST00000025921.15	3018	18	12269	0	0	0	3prime_fragment	FALSE	canonical	0	0	junction_3	113.992280440388	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	6897	False	NA	NA	False	AAGAAA	-13	NA	7260543	7254123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397
ENSMUSG00000024974.11_53588829_53616355_1	chr19	+	1521	14	ISM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	0	17909	0	-8571	5prime_fragment	FALSE	canonical	3	891	junction_13	80.6219903341749	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAGAAAGATGAACTACAAA	NA	False	NA	NA	False	AGTAAA	-4	NA	53588828	53616355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379_53613594_53616281
ENSMUSG00000024974.11_53588829_53633585_1	chr19	+	4172	29	FSM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	0	679	0	346	multi-exon	FALSE	non_canonical	3	891	junction_13	92.0610586535271	1565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGCTTTCAGTTACTAG	NA	False	NA	78	True	ATTAAA	-21	NA	53588828	53633585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379_53613594_53616281_53616386_53616483_53616584_53617097_53617259_53617674_53617817_53619917_53620069_53622389_53622543_53624101_53624254_53624811_53624971_53627128_53627237_53627757_53627867_53629192_53629441_53629528_53629742_53629955_53630148_53630291_53630470_53632274_53632382_53633137
ENSMUSG00000024974.11_53629552_53633585_1	chr19	+	1115	5	ISM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	40723	679	-2237	346	3prime_fragment	FALSE	canonical	3	1084	junction_1	84.6994687114388	837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGCTTTCAGTTACTAG	6384	False	NA	78	True	ATTAAA	-21	NA	53629551	53633585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_53629742_53629955_53630148_53630291_53630470_53632274_53632382_53633137
ENSMUSG00000024976.15_53933304_54019882_1	chr19	+	2174	9	NNC	ENSMUSG00000024976.15	novel	3965	9	NA	NA	0	-1416	at_least_one_novel_splicesite	FALSE	canonical	3	220	junction_1	61.2775448267961	297	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTATATAAGTTTTCTTT	3925	False	NA	NA	False	AATAGA	-45	NA	53933303	54019882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_53933327_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
ENSMUSG00000024981.7_55242345_55285057_1	chr19	+	2604	22	FSM	ENSMUSG00000024981.7	ENSMUST00000043150.6	4243	22	544	1095	544	947	multi-exon	TRUE	canonical	3	56	junction_1	11.2473730871055	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTTGTGCCTGCAGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	55242344	55285057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_55242599_55257075_55257261_55261200_55261310_55266338_55266404_55266512_55266615_55267895_55267996_55268872_55269052_55269767_55269801_55269881_55269934_55270904_55270979_55271739_55271818_55272834_55272970_55276259_55276395_55277236_55277333_55279577_55279651_55279849_55279939_55280204_55280322_55282018_55282163_55282633_55282736_55283264_55283337_55283804_55283955_55284797
ENSMUSG00000024983.11_55304727_55612514_1	chr19	+	982	8	FSM	ENSMUSG00000024983.11	ENSMUST00000095950.3	3405	8	-56	2479	0	-2479	multi-exon	FALSE	canonical	3	70	junction_7	16.8219972606327	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATGTGGGTTGGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	55304726	55612514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942_55487014_55487674_55487737_55612248
ENSMUSG00000024983.11_55304782_55612402_1	chr19	+	815	8	FSM	ENSMUSG00000024983.11	ENSMUST00000095950.3	3405	8	-1	2591	0	-2591	multi-exon	FALSE	canonical	3	70	junction_7	16.8219972606327	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCACATGAATCATTCTT	NA	False	NA	NA	False	GATAAA	-38	NA	55304781	55612402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942_55487014_55487674_55487737_55612248
ENSMUSG00000024983.11_55304782_55612402_2	chr19	+	826	8	NNC	ENSMUSG00000024983.11	novel	4175	9	NA	NA	0	-2591	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_7	37.8940520883353	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCACATGAATCATTCTT	NA	False	NA	NA	False	GATAAA	-38	NA	55304781	55612402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942_55487014_55487674_55487748_55612248
ENSMUSG00000024983.11_55304789_55317007_1	chr19	+	477	3	ISM	ENSMUSG00000024983.11	ENSMUST00000225051.2	2919	4	0	4063	0	-4063	5prime_fragment	FALSE	canonical	3	111	junction_2	1.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGAGCAGCAGATCTT	NA	False	NA	NA	False	ATTAAA	-23	NA	55304788	55317007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_55304977_55310370_55310430_55316777
ENSMUSG00000024985.21_55730675_55731635_2	chr19	+	392	2	NNC	ENSMUSG00000024985.21	novel	982	7	NA	NA	0	-167346	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACCGCGCTCCCCGCCCT	NA	False	NA	NA	False	NA	NA	NA	55730674	55731635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_55731025_55731593
ENSMUSG00000024989.16_38045855_38062870_1	chr19	+	2458	9	ISM	ENSMUSG00000024989.16	ENSMUST00000237408.2	2683	10	2318	-1	2318	1	3prime_fragment	FALSE	canonical	3	6	junction_8	130.374220994796	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTCTAGTATGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	38045854	38062870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_38045991_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061748
ENSMUSG00000024991.9_60749555_60757193_1	chr19	-	2389	6	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	21888	0	3396	0	3prime_fragment	FALSE	canonical	3	1162	junction_5	125.870727335628	920	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGTGTTTTGTCAATGG	9773	False	NA	-31	True	AATAAA	-17	NA	60757193	60749554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145
ENSMUSG00000024991.9_60749555_60761298_1	chr19	-	3191	11	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	17783	0	-709	0	3prime_fragment	FALSE	canonical	3	964	junction_7	191.949889294055	1068	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGTGTTTTGTCAATGG	9755	False	NA	-31	True	AATAAA	-17	NA	60761298	60749554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129
ENSMUSG00000024991.9_60758348_60761298_1	chr19	-	621	5	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	17783	8793	-709	876	internal_fragment	FALSE	canonical	3	964	junction_1	67.6036241632059	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAGAAGAGCAGAGGA	9755	False	NA	23	True	NA	NA	NA	60761298	60758347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129
ENSMUSG00000024991.9_60758348_60761400_1	chr19	-	723	5	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	17681	8793	-811	876	internal_fragment	FALSE	canonical	3	964	junction_1	67.6036241632059	171	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAGAAGAGCAGAGGA	9653	False	NA	23	True	NA	NA	NA	60761400	60758347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129
ENSMUSG00000024991.9_60758348_60779096_1	chr19	-	2570	16	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	-15	8793	0	876	5prime_fragment	FALSE	canonical	0	0	junction_11	338.891618203946	359	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAGAAGAGCAGAGGA	8739	False	NA	23	True	NA	NA	NA	60779096	60758347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
ENSMUSG00000024993.16_60800029_60808007_1	chr19	+	552	4	NNC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	0	1130	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	154.34377214517	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGCACATAATAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	60800028	60808007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_60800112_60803049_60803247_60805968_60806049_60807815
ENSMUSG00000024993.16_60800029_60823551_1	chr19	+	1213	9	FSM	ENSMUSG00000024993.16	ENSMUST00000025957.9	2307	9	-20	1114	0	0	multi-exon	FALSE	canonical	3	273	junction_1	50.1458809375207	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCAAATAGTGAGATCTTA	NA	False	NA	NA	False	NA	NA	NA	60800028	60823551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_60800112_60803049_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
ENSMUSG00000024993.16_60800029_60823755_1	chr19	+	1417	9	FSM	ENSMUSG00000024993.16	ENSMUST00000025957.9	2307	9	-20	910	0	204	multi-exon	FALSE	canonical	3	273	junction_1	50.1458809375207	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCCTCAAAGTTTGCTTT	NA	False	NA	NA	False	CATAAA	-23	NA	60800028	60823755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_60800112_60803049_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
ENSMUSG00000024993.16_60800029_60824673_2	chr19	+	2355	9	NIC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	0	8	combination_of_known_junctions	FALSE	canonical	3	138	junction_1	88.7623230881211	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTGATGTCTTTTCATT	NA	False	NA	NA	False	ATTAAA	-21	NA	60800028	60824673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_60800112_60803029_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
ENSMUSG00000024997.8_60852489_60862994_1	chr19	-	1336	6	NIC	ENSMUSG00000024997.8	novel	1478	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_4	303.346930098196	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGGCACCGTTTCTCC	1447	False	NA	-1	True	AATAAA	-34	NA	60862994	60852488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_60853158_60853603_60853770_60855953_60856058_60858441_60858578_60861565_60861702_60862869
ENSMUSG00000024999.8_38777579_38807681_1	chr19	-	2970	21	FSM	ENSMUSG00000024999.8	ENSMUST00000025963.8	3977	21	0	1007	0	-1007	multi-exon	FALSE	canonical	3	233	junction_1	18.6711006638602	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACCTTCATGGTTTTTTT	2288	False	NA	-9	True	AATAAA	-20	NA	38807681	38777578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_38778142_38778731_38778817_38781144_38781243_38782548_38782678_38783415_38783598_38783929_38784002_38784081_38784146_38784240_38784314_38787341_38787443_38787753_38787835_38792842_38792975_38795530_38795660_38795969_38796146_38798451_38798546_38798741_38798904_38800787_38800919_38802524_38802579_38803129_38803288_38804026_38804160_38806381_38806590_38807536
ENSMUSG00000025001.12_38919359_38928951_1	chr19	+	500	5	ISM	ENSMUSG00000025001.12	ENSMUST00000025965.12	5868	22	0	30544	0	7	5prime_fragment	FALSE	canonical	3	1647	junction_3	59.1375515218545	885	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAACTAACTTTGTTCCAG	NA	False	NA	20	True	NA	NA	NA	38919358	38928951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_38919520_38919834_38919957_38923857_38923981_38926849_38926907_38928914
ENSMUSG00000025001.12_38919359_38956721_2	chr19	+	3089	22	NNC	ENSMUSG00000025001.12	novel	5868	22	NA	NA	0	-2774	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_20	405.297527956686	2224	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGGTCACATTATTTT	NA	False	NA	14	True	AATAAA	-15	NA	38919358	38956721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_38919520_38919834_38919957_38923857_38923981_38926849_38926907_38928914_38928952_38929040_38929106_38930897_38930937_38932157_38932386_38933834_38934018_38935168_38935313_38938631_38938829_38940278_38940376_38941986_38942149_38943134_38943275_38943357_38943497_38945478_38945563_38945641_38945762_38947487_38947605_38948112_38948273_38953040_38953138_38953855_38953928_38956176
ENSMUSG00000025007.14_40562678_40576828_1	chr19	-	797	6	NIC	ENSMUSG00000025007.14	novel	2493	16	NA	NA	0	110	combination_of_known_junctions	FALSE	canonical	3	88	junction_5	469.888752791552	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGATCTTCAGGGGGTA	NA	False	NA	NA	False	NA	NA	NA	40576828	40562677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40576753
ENSMUSG00000025007.14_40562678_40576828_2	chr19	-	863	7	ISM	ENSMUSG00000025007.14	ENSMUST00000134749.8	2493	16	39	17177	0	110	5prime_fragment	FALSE	canonical	3	1135	junction_3	86.92461612736	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGATCTTCAGGGGGTA	NA	False	NA	NA	False	NA	NA	NA	40576828	40562677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
ENSMUSG00000025019.18_41471076_41534582_1	chr19	+	636	5	ISM	ENSMUSG00000025019.18	ENSMUST00000067795.13	4833	8	0	16118	0	-13025	5prime_fragment	FALSE	canonical	3	83	junction_3	9.51314879522022	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTGTCCTCTTTAATTT	NA	False	NA	NA	False	ATTAAA	-22	NA	41471075	41534582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_41471223_41471965_41472040_41516459_41516526_41516999_41517080_41534313
ENSMUSG00000025024.8_53367827_53379009_1	chr19	-	1943	6	NNC	ENSMUSG00000025024.8	novel	1948	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	90.8748590095192	1472	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCAGTGTGTTAACAAAG	NA	False	NA	-8	True	AATAAA	-17	NA	53379009	53367826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_53369033_53369671_53369821_53371987_53372150_53372884_53373028_53377733_53377854_53378846
ENSMUSG00000025024.8_53368311_53379009_1	chr19	-	1459	6	NNC	ENSMUSG00000025024.8	novel	1948	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	90.8748590095192	558	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTAGGATGTGCGCCCC	NA	False	NA	-9	True	ATTAAA	-15	NA	53379009	53368310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_53369033_53369671_53369821_53371987_53372150_53372884_53373028_53377733_53377854_53378846
ENSMUSG00000025024.8_53372462_53379009_1	chr19	-	849	3	ISM	ENSMUSG00000025024.8	ENSMUST00000236962.2	1478	6	-4	4152	0	436	5prime_fragment	FALSE	canonical	3	184	junction_1	12	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGTGAATTGCTGAC	NA	False	NA	NA	False	NA	NA	NA	53379009	53372461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_53373028_53377733_53377854_53378846
ENSMUSG00000025027.19_52979611_52985393_1	chr19	-	779	4	ISM	ENSMUSG00000025027.19	ENSMUST00000235453.2	1679	6	2911	-3	-329	0	3prime_fragment	FALSE	canonical	3	1351	junction_3	89.0655189546812	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTGTCTGCCTCTTT	NA	False	NA	0	True	AATAAA	-17	NA	52985393	52979610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330
ENSMUSG00000025027.19_52979611_53027072_1	chr19	-	2508	21	FSM	ENSMUSG00000025027.19	ENSMUST00000183108.8	4078	21	1573	-3	0	0	multi-exon	FALSE	canonical	3	790	junction_19	199.189727395767	1009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTGTCTGCCTCTTT	5059	False	NA	0	True	AATAAA	-17	NA	53027072	52979610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53020439_53020529_53026944
ENSMUSG00000025027.19_53009552_53027031_1	chr19	-	494	4	NNC	ENSMUSG00000025027.19	novel	2216	20	NA	NA	-36	-3695	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	384.008969802645	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTTATAGTTGACAAAGT	5100	False	NA	NA	False	NA	NA	NA	53027031	53009551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_53009745_53013689_53013815_53020439_53020529_53026944
ENSMUSG00000025035.10_46519546_46561637_1	chr19	-	937	6	FSM	ENSMUSG00000025035.10	ENSMUST00000026009.10	843	6	-105	11	0	0	multi-exon	FALSE	canonical	3	254	junction_1	35.3870032639103	3149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGTTGAAATAGTATTAAAT	NA	False	NA	-32	True	AATAAA	-24	NA	46561637	46519545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_46519826_46530790_46530977_46531920_46531972_46540011_46540129_46546676_46546821_46561478
ENSMUSG00000025036.8_46561804_46581131_1	chr19	+	1328	11	ISM	ENSMUSG00000025036.8	ENSMUST00000026011.8	3205	12	-2	4203	0	2142	5prime_fragment	FALSE	canonical	3	36	junction_10	6.8622153857191	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCTCATGCTCTGGTC	NA	False	NA	NA	False	TTTAAA	-27	NA	46561803	46581131	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738
ENSMUSG00000025036.8_46561804_46583719_1	chr19	+	1592	12	FSM	ENSMUSG00000025036.8	ENSMUST00000026011.8	3205	12	-2	1615	0	-1615	multi-exon	FALSE	canonical	3	36	junction_10	6.85384611817119	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAAAAAACAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	46561803	46583719	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738_46580787_46583110
ENSMUSG00000025037.7_16486075_16551983_1	chrX	+	1955	15	FSM	ENSMUSG00000025037.7	ENSMUST00000026013.6	4167	15	138	2074	138	-2074	multi-exon	FALSE	canonical	3	197	junction_7	23.3440330181188	1137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTGTGTAGCATCCAATG	NA	False	NA	10	True	AATAAA	-20	NA	16486074	16551983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_16486153_16500420_16500516_16505302_16505441_16524806_16524912_16525683_16525776_16528555_16528698_16530889_16531040_16531890_16532051_16539085_16539183_16543793_16543848_16547052_16547111_16548439_16548538_16550202_16550315_16551220_16551284_16551470
ENSMUSG00000025038.8_16998288_17117545_1	chrX	-	2130	13	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68062	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_12	30.7679486912382	192	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACCATTTTATTGTA	NA	False	NA	-9	True	ATTAAA	-17	NA	17117545	16998287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17117502
ENSMUSG00000025038.8_16998288_17117545_2	chrX	-	2281	14	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68062	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_13	14.945265027612	401	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACCATTTTATTGTA	NA	False	NA	-9	True	ATTAAA	-17	NA	17117545	16998287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
ENSMUSG00000025038.8_16998288_17117545_3	chrX	-	2142	13	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68062	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_8	31.8576477823179	262	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACCATTTTATTGTA	NA	False	NA	-9	True	ATTAAA	-17	NA	17117545	16998287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
ENSMUSG00000025038.8_16998416_17117545_3	chrX	-	2153	14	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68062	-128	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_13	14.945265027612	334	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAAACAAGGTTTGTATT	NA	False	NA	NA	False	AATAAA	-29	NA	17117545	16998415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
ENSMUSG00000025041.18_46877101_46950747_1	chr19	-	1895	18	FSM	ENSMUSG00000025041.18	ENSMUST00000168536.9	3728	18	0	1833	0	346	multi-exon	TRUE	canonical	3	118	junction_5	15.8666589126981	313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTTCAGTTTTGTGTAT	7192	False	NA	-25	True	TTTAAA	-15	NA	46950747	46877100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46939284_46939405_46950710
ENSMUSG00000025049.7_47071903_47079064_1	chr19	+	348	4	NIC	ENSMUSG00000025049.7	novel	3260	11	NA	NA	15718	7146	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	74478	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTCGGCCCGACCGGAAG	4158	False	NA	NA	False	NA	NA	NA	47071902	47079064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_47072009_47074393_47074487_47074572_47074669_47079011
ENSMUSG00000025049.7_47071903_47079086_1	chr19	+	370	4	NIC	ENSMUSG00000025049.7	novel	3260	11	NA	NA	15718	7168	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	78968	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCCTCCCCGCACGCGAC	4158	False	NA	NA	False	NA	NA	NA	47071902	47079086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_47072009_47074393_47074487_47074572_47074669_47079011
ENSMUSG00000025050.9_47022058_47038978_1	chr19	-	1792	10	FSM	ENSMUSG00000025050.9	ENSMUST00000026032.7	2159	10	365	2	351	0	multi-exon	FALSE	canonical	3	486	junction_3	49.2396507895471	320	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTGAGGTGTGTTGACA	NA	False	NA	-21	True	AATAAA	-15	NA	47038978	47022057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_47023125_47025676_47025764_47028482_47028582_47031204_47031233_47034248_47034358_47036385_47036446_47036546_47036603_47037238_47037336_47037428_47037529_47038889
ENSMUSG00000025056.5_85235370_85239553_1	chrX	+	727	2	NNC	ENSMUSG00000025056.5	novel	1808	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	0	156	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGACTGGAGAGTTTTCTTG	NA	False	NA	11	True	AATAAA	-23	NA	85235369	85239553	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_85235500_85238956
ENSMUSG00000025056.5_85235973_85239553_1	chrX	+	1205	2	FSM	ENSMUSG00000025056.5	ENSMUST00000026036.5	1808	2	603	0	603	0	multi-exon	FALSE	canonical	3	839	junction_1	0	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGACTGGAGAGTTTTCTTG	NA	False	NA	11	True	AATAAA	-23	NA	85235972	85239553	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_85236581_85238956
ENSMUSG00000025056.5_85236180_85239553_1	chrX	+	998	2	FSM	ENSMUSG00000025056.5	ENSMUST00000026036.5	1808	2	810	0	810	0	multi-exon	FALSE	canonical	3	839	junction_1	0	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGACTGGAGAGTTTTCTTG	NA	False	NA	11	True	AATAAA	-23	NA	85236179	85239553	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_85236581_85238956
ENSMUSG00000025066.11_47720121_47724027_1	chr19	+	1608	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	786.61442270022	7592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTCATATCCTTATTTC	NA	False	NA	68	True	ACTAAA	-21	NA	47720120	47724027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_47720261_47721068_47721192_47721240_47721428_47721957_47722351_47723262
ENSMUSG00000025066.11_47720121_47724027_2	chr19	+	1600	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	915.276734108324	4374	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTCATATCCTTATTTC	NA	False	NA	68	True	ACTAAA	-21	NA	47720120	47724027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_47720261_47721076_47721192_47721240_47721428_47721957_47722351_47723262
ENSMUSG00000025066.11_47720121_47724027_3	chr19	+	1560	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	786.61442270022	2958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTCATATCCTTATTTC	NA	False	NA	68	True	ACTAAA	-21	NA	47720120	47724027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_47720261_47721068_47721192_47721288_47721428_47721957_47722351_47723262
ENSMUSG00000025066.11_47720121_47724027_4	chr19	+	1560	6	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	889.229014371439	4380	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTCATATCCTTATTTC	NA	False	NA	68	True	ACTAAA	-21	NA	47720120	47724027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_47720261_47721068_47721117_47721164_47721192_47721240_47721428_47721957_47722351_47723262
ENSMUSG00000025066.11_47720121_47724027_5	chr19	+	1608	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	786.61442270022	3609	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTCATATCCTTATTTC	NA	False	NA	68	True	ACTAAA	-21	NA	47720120	47724027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_47720261_47721068_47721144_47721192_47721428_47721957_47722351_47723262
ENSMUSG00000025066.11_47720121_47724027_6	chr19	+	1552	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	915.276734108324	827	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTCATATCCTTATTTC	NA	False	NA	68	True	ACTAAA	-21	NA	47720120	47724027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_47720261_47721076_47721144_47721240_47721428_47721957_47722351_47723262
ENSMUSG00000025066.11_47720121_47724027_7	chr19	+	1565	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	786.61442270022	2823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTCATATCCTTATTTC	NA	False	NA	68	True	ACTAAA	-21	NA	47720120	47724027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_47720261_47721068_47721144_47721235_47721428_47721957_47722351_47723262
ENSMUSG00000025068.9_47843469_47853006_1	chr19	+	899	6	FSM	ENSMUSG00000025068.9	ENSMUST00000026050.8	1182	6	60	223	0	0	multi-exon	FALSE	canonical	3	277	junction_4	32.103582354622	1267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCAGGGCCCCACTCCTG	8528	False	NA	58	True	NA	NA	NA	47843468	47853006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_47843562_47843653_47843763_47846297_47846521_47847870_47847970_47851817_47851922_47852735
ENSMUSG00000025086.14_57441366_57461465_1	chr19	+	713	5	NNC	ENSMUSG00000025086.14	novel	1564	7	NA	NA	0	-10593	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	93.2506702388782	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGCCCAGGCTCAGTACA	NA	False	NA	NA	False	ATTAAA	-18	NA	57441365	57461465	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461345_57461384
ENSMUSG00000025086.14_57441366_57462250_1	chr19	+	727	5	NNC	ENSMUSG00000025086.14	novel	1564	7	NA	NA	0	-9808	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	89.3602260516389	59	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTAGATGTTGGATTAT	NA	False	NA	NA	False	ATTAAA	-19	NA	57441365	57462250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57462023
ENSMUSG00000025086.14_57441366_57476839_1	chr19	+	1169	8	FSM	ENSMUSG00000025086.14	ENSMUST00000026073.14	3789	8	22	2598	0	1390	multi-exon	FALSE	canonical	3	146	junction_6	27.9131305507436	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGATCTTCCCTTAGTCTT	NA	False	NA	NA	False	GATAAA	-14	NA	57441365	57476839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57472012_57472086_57473504_57473645_57475696_57475754_57476440
ENSMUSG00000025086.14_57441366_57477342_1	chr19	+	1672	8	FSM	ENSMUSG00000025086.14	ENSMUST00000026073.14	3789	8	22	2095	0	1893	multi-exon	FALSE	canonical	3	146	junction_6	27.9131305507436	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTCCTGCCTGTTCGTT	NA	False	NA	13	True	ATTAAA	-2	NA	57441365	57477342	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57472012_57472086_57473504_57473645_57475696_57475754_57476440
ENSMUSG00000025090.10_58500424_58516179_1	chr19	+	839	5	ISM	ENSMUSG00000025090.10	ENSMUST00000235305.2	855	7	0	25338	0	-25281	5prime_fragment	FALSE	canonical	3	10	junction_1	12.8135670287395	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGGTTTTGTTATGAGC	NA	False	NA	NA	False	AATAAA	-20	NA	58500423	58516179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_58500459_58500742_58500868_58501047_58501134_58514279_58514397_58515703
ENSMUSG00000025090.10_58500424_58516179_2	chr19	+	878	5	ISM	ENSMUSG00000025090.10	ENSMUST00000069419.8	1009	9	-29	25281	0	-25281	5prime_fragment	FALSE	canonical	0	0	junction_1	16.7089048115069	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGGTTTTGTTATGAGC	NA	False	NA	NA	False	AATAAA	-20	NA	58500423	58516179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_58500498_58500742_58500868_58501047_58501134_58514279_58514397_58515703
ENSMUSG00000025090.10_58500424_58541518_1	chr19	+	573	5	NIC	ENSMUSG00000025090.10	novel	855	7	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	17.7675969112314	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTAAGTTGGTCTGTCCT	NA	False	NA	NA	False	ACTAAA	-6	NA	58500423	58541518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_58500459_58500742_58500868_58501047_58501134_58539855_58539948_58541283
ENSMUSG00000025090.10_58500424_58541518_3	chr19	+	857	4	NIC	ENSMUSG00000025090.10	novel	855	7	NA	NA	0	1	intron_retention	FALSE	canonical	1	2	junction_2	18.5172592164415	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTAAGTTGGTCTGTCCT	NA	False	NA	NA	False	ACTAAA	-6	NA	58500423	58541518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_58500868_58501047_58501134_58539855_58539948_58541283
ENSMUSG00000025090.10_58500424_58541518_4	chr19	+	895	7	NIC	ENSMUSG00000025090.10	novel	855	7	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	16.3851219776425	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTAAGTTGGTCTGTCCT	NA	False	NA	NA	False	ACTAAA	-6	NA	58500423	58541518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_58500498_58500742_58500868_58501047_58501134_58514279_58514397_58515703_58515870_58539855_58539948_58541283
ENSMUSG00000025102.15_81430031_81439217_1	chr7	-	869	5	NNC	ENSMUSG00000025102.15	novel	405	4	NA	NA	0	1899	at_least_one_novel_splicesite	TRUE	canonical	3	98	junction_4	96.0325465662553	1199	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAGCCTACAACAAAATG	NA	False	NA	NA	False	NA	NA	NA	81439217	81430030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81438999
ENSMUSG00000025102.15_81430031_81439217_2	chr7	-	770	5	NNC	ENSMUSG00000025102.15	novel	405	4	NA	NA	0	1899	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	126.089254102005	1021	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAGCCTACAACAAAATG	NA	False	NA	NA	False	NA	NA	NA	81439217	81430030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81439098
ENSMUSG00000025102.15_81431715_81439217_1	chr7	-	1093	5	FSM	ENSMUSG00000025102.15	ENSMUST00000026092.9	887	5	9	-215	0	215	multi-exon	FALSE	canonical	0	0	junction_4	120.296508677517	1474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTGCAGTGGTGGCGCA	NA	False	NA	NA	False	GATAAA	-3	NA	81439217	81431714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439102
ENSMUSG00000025102.15_81431930_81439217_1	chr7	-	981	5	NIC	ENSMUSG00000025102.15	novel	887	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_4	83.5852857864349	1107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTAGCAGTTTCGAGTGC	NA	False	NA	NA	False	AATAAA	-17	NA	81439217	81431929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81438999
ENSMUSG00000025102.15_81432032_81439217_1	chr7	-	703	5	NIC	ENSMUSG00000025102.15	novel	405	4	NA	NA	0	-102	combination_of_known_junctions	FALSE	canonical	3	35	junction_4	106.699051073569	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTAATGTCAGTTATTT	NA	False	NA	-1	True	AGTAAA	-17	NA	81439217	81432031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439175
ENSMUSG00000025102.15_81432032_81439217_2	chr7	-	776	5	FSM	ENSMUSG00000025102.15	ENSMUST00000026092.9	887	5	9	102	0	-102	multi-exon	FALSE	canonical	0	0	junction_4	120.296508677517	1034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTAATGTCAGTTATTT	NA	False	NA	-1	True	AGTAAA	-17	NA	81439217	81432031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439102
ENSMUSG00000025102.15_81432032_81439217_3	chr7	-	879	5	NIC	ENSMUSG00000025102.15	novel	887	5	NA	NA	0	-102	combination_of_known_junctions	FALSE	canonical	3	98	junction_4	83.5852857864349	667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTAATGTCAGTTATTT	NA	False	NA	-1	True	AGTAAA	-17	NA	81439217	81432031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81438999
ENSMUSG00000025102.15_81432032_81439217_4	chr7	-	762	5	NNC	ENSMUSG00000025102.15	novel	887	5	NA	NA	0	-102	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_4	116.763382530655	551	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTAATGTCAGTTATTT	NA	False	NA	-1	True	AGTAAA	-17	NA	81439217	81432031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439116
ENSMUSG00000025130.12_120451131_120463699_1	chr11	-	2474	11	FSM	ENSMUSG00000025130.12	ENSMUST00000026122.11	2861	11	380	7	-32	0	multi-exon	FALSE	canonical	3	1798	junction_7	89.3174674965653	2847	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCATTGTCACTGCTGCT	3747	False	NA	-11	True	AATAAA	-14	NA	120463699	120451130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
ENSMUSG00000025132.14_120468930_120472450_1	chr11	-	805	3	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1584	1446	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGGTCTGTGCAGCTT	NA	False	NA	-10	True	AATAAA	-22	NA	120472450	120468929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_120469544_120471131_120471220_120472347
ENSMUSG00000025133.10_97130220_97190605_1	chr7	+	3187	23	FSM	ENSMUSG00000025133.10	ENSMUST00000026126.10	3240	23	57	-4	0	3	multi-exon	FALSE	canonical	3	369	junction_9	43.027187253819	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTCTAGTTTCTGGTCC	990	False	NA	29	True	AATAAA	-17	NA	97130219	97190605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
ENSMUSG00000025133.10_97184417_97190605_1	chr7	+	583	3	FSM	ENSMUSG00000025133.10	ENSMUST00000205706.2	579	3	132	-136	-100	3	multi-exon	FALSE	canonical	3	458	junction_1	36.5	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTCTAGTTTCTGGTCC	7158	False	NA	29	True	AATAAA	-17	NA	97184416	97190605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_97184492_97187106_97187228_97190218
ENSMUSG00000025134.3_120485335_120485928_1	chr11	-	482	2	ISM	ENSMUSG00000025134.3	ENSMUST00000155325.2	648	4	555	0	555	0	3prime_fragment	FALSE	canonical	3	4441	junction_1	0	835	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGCTGTCTGGTCCATC	7569	False	NA	-7	True	AATAAA	-19	NA	120485928	120485334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_120485694_120485805
ENSMUSG00000025134.3_120485335_120488541_1	chr11	-	827	5	ISM	ENSMUSG00000025134.3	ENSMUST00000026125.3	3527	6	650	2388	516	0	3prime_fragment	FALSE	canonical	3	3877	junction_4	220.512329587259	1388	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGCTGTCTGGTCCATC	4956	False	NA	-7	True	AATAAA	-19	NA	120488541	120485334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_120485694_120485805_120485981_120486080_120486145_120486745_120486894_120488460
ENSMUSG00000025135.13_120489266_120496602_1	chr11	+	788	3	FSM	ENSMUSG00000025135.13	ENSMUST00000026128.10	3229	3	19	2422	0	0	multi-exon	FALSE	canonical	3	903	junction_1	470.5	6974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCAAAACCTTCATCGTA	3919	False	NA	129	True	AATAAA	-17	NA	120489265	120496602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120489431_120490067_120490195_120496106
ENSMUSG00000025135.13_120489358_120496502_1	chr11	+	596	3	FSM	ENSMUSG00000025135.13	ENSMUST00000026128.10	3229	3	111	2522	0	-100	multi-exon	FALSE	canonical	3	903	junction_1	470.5	3787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGTGCTGGAGGCCTCTGC	4011	False	NA	29	True	AGTAAA	-18	NA	120489357	120496502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120489431_120490067_120490195_120496106
ENSMUSG00000025135.13_120489461_120496602_1	chr11	+	859	3	FSM	ENSMUSG00000025135.13	ENSMUST00000093140.5	962	3	103	0	103	0	multi-exon	FALSE	canonical	3	1006	junction_1	419	8287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCAAAACCTTCATCGTA	4114	False	NA	129	True	AATAAA	-17	NA	120489460	120496602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120489697_120490067_120490195_120496106
ENSMUSG00000025135.13_120489512_120496502_1	chr11	+	708	3	FSM	ENSMUSG00000025135.13	ENSMUST00000093140.5	962	3	154	100	154	-100	multi-exon	FALSE	canonical	3	1006	junction_1	419	5983	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGTGCTGGAGGCCTCTGC	4165	False	NA	29	True	AGTAAA	-18	NA	120489511	120496502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120489697_120490067_120490195_120496106
ENSMUSG00000025137.16_120505593_120508762_1	chr11	-	948	3	FSM	ENSMUSG00000025137.16	ENSMUST00000126148.2	513	3	-26	-409	0	409	multi-exon	FALSE	canonical	3	395	junction_2	25	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGAAAAAAAAAACCCCAA	NA	False	NA	NA	False	NA	NA	NA	120508762	120505592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120506279_120506674_120506764_120508589
ENSMUSG00000025137.16_120505737_120508695_1	chr11	-	1133	2	FSM	ENSMUSG00000025137.16	ENSMUST00000160059.2	597	2	0	-536	0	265	multi-exon	FALSE	canonical	3	395	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCGGGCGTGGTAGCGC	NA	False	NA	NA	False	NA	NA	NA	120508695	120505736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120506764_120508589
ENSMUSG00000025137.16_120505737_120508762_1	chr11	-	804	3	FSM	ENSMUSG00000025137.16	ENSMUST00000126148.2	513	3	-26	-265	0	265	multi-exon	FALSE	canonical	3	395	junction_2	25	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCGGGCGTGGTAGCGC	NA	False	NA	NA	False	NA	NA	NA	120508762	120505736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120506279_120506674_120506764_120508589
ENSMUSG00000025138.15_120509198_120515811_1	chr11	-	1840	11	NIC	ENSMUSG00000025138.15	novel	1727	10	NA	NA	-1	0	intron_retention	FALSE	canonical	2	6	junction_2	26.3286915740224	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTCCCGATGACTGT	NA	False	NA	-1	True	ATTAAA	-15	NA	120515811	120509197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_120509876_120509974_120510117_120510988_120511096_120511249_120511331_120511472_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
ENSMUSG00000025140.16_120530242_120534542_1	chr11	-	1677	7	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_6	377.376764285008	740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534542	120530241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120534528
ENSMUSG00000025140.16_120530242_120534542_2	chr11	-	1700	7	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	364.341148132107	785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534542	120530241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120534505
ENSMUSG00000025140.16_120530242_120534542_3	chr11	-	1822	8	NNC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	349.707107769473	1337	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534542	120530241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_120531175_120531974_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
ENSMUSG00000025140.16_120530242_120534542_4	chr11	-	1811	8	NNC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_7	342.313318705635	1582	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534542	120530241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534096_120534505
ENSMUSG00000025142.19_120564185_120600273_1	chr11	+	1897	16	NIC	ENSMUSG00000025142.19	novel	920	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	238.262376383683	786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120564184	120600273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_120564441_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUSG00000025142.19_120596016_120600273_1	chr11	+	530	5	NNC	ENSMUSG00000025142.19	novel	468	3	NA	NA	2676	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	436.370542085508	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120596015	120600273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_120596144_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUSG00000025142.19_120598904_120600273_1	chr11	+	563	5	NNC	ENSMUSG00000025142.19	novel	468	3	NA	NA	-580	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_1	493.912631444064	263	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	217	False	NA	16	True	AATAAA	-20	NA	120598903	120600273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_120599106_120599483_120599536_120599755_120599826_120599937_120600073_120600169
ENSMUSG00000025142.19_120598904_120600273_2	chr11	+	544	5	NNC	ENSMUSG00000025142.19	novel	468	3	NA	NA	-580	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	453.617955993808	142	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	217	False	NA	16	True	AATAAA	-20	NA	120598903	120600273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_120599046_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUSG00000025142.19_120598904_120600273_3	chr11	+	604	5	NNC	ENSMUSG00000025142.19	novel	468	3	NA	NA	-580	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_1	432.921759674886	587	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	217	False	NA	16	True	AATAAA	-20	NA	120598903	120600273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_120599106_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUSG00000025144.18_120601769_120604564_1	chr11	-	553	4	NIC	ENSMUSG00000025144.18	novel	692	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	126	junction_3	359.512942125253	2666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCTGCTTTCTCTTTGCC	NA	False	NA	-3	True	AATAAA	-18	NA	120604564	120601768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_120602133_120602215_120602305_120602528_120602583_120604518
ENSMUSG00000025145.14_120611018_120611954_1	chr11	+	653	2	FSM	ENSMUSG00000025145.14	ENSMUST00000155187.2	898	2	461	-216	461	0	multi-exon	FALSE	canonical	3	52	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCGTCCAGTTCCTTTCT	2520	False	NA	NA	False	GATAAA	-1	NA	120611017	120611954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120611160_120611443
ENSMUSG00000025151.17_93579082_93585629_1	chrX	-	2699	13	FSM	ENSMUSG00000025151.17	ENSMUST00000026142.8	2821	13	120	2	-20	0	multi-exon	FALSE	canonical	3	1240	junction_10	166.264514821681	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTGTGCTTCTCATC	NA	False	NA	-4	True	AATAAA	-19	NA	93585629	93579081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
ENSMUSG00000025154.16_41775040_41790494_1	chr19	-	598	4	ISM	ENSMUSG00000025154.16	ENSMUST00000177495.2	1652	12	-8	16607	-8	-16607	5prime_fragment	FALSE	canonical	3	356	junction_2	45.8475735453906	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCTGACCCATAAACATTT	4519	False	NA	NA	False	NA	NA	NA	41790494	41775039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_41775207_41776744_41776826_41780185_41780452_41790410
ENSMUSG00000025155.16_120680027_120687221_1	chr11	-	2121	14	NNC	ENSMUSG00000025155.16	novel	1909	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	84	junction_13	257.446748673132	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCAGAGATCTCTAGTGA	NA	False	NA	-16	True	AATAAA	-17	NA	120687221	120680026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686757
ENSMUSG00000025155.16_120680027_120687221_2	chr11	-	1834	14	NIC	ENSMUSG00000025155.16	novel	1909	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	287	junction_5	178.060258399514	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCAGAGATCTCTAGTGA	NA	False	NA	-16	True	AATAAA	-17	NA	120687221	120680026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120687044
ENSMUSG00000025157.9_41921929_41932543_1	chr19	+	1869	12	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_8	134.380796050282	824	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4139	False	NA	18	True	AATAAA	-24	NA	41921928	41932543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41928295_41928344_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ENSMUSG00000025157.9_41921929_41932543_2	chr19	+	1909	11	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	121.95691862293	775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4139	False	NA	18	True	AATAAA	-24	NA	41921928	41932543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927158_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ENSMUSG00000025157.9_41921929_41932543_4	chr19	+	1665	11	NNC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_10	126.784226148208	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4139	False	NA	18	True	AATAAA	-24	NA	41921928	41932543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932176
ENSMUSG00000025157.9_41921929_41932543_5	chr19	+	1719	11	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_1	121.178422171606	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4139	False	NA	18	True	AATAAA	-24	NA	41921928	41932543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_41922105_41923278_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ENSMUSG00000025159.9_41921929_41932543_1	chr19	-	1813	11	NNC	ENSMUSG00000025159.9	novel	7875	29	NA	NA	1523	7596	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	826	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGCGCAGGCGCGAGGC	754	False	NA	NA	False	NA	NA	NA	41932543	41921928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930382_41930446_41932020
ENSMUSG00000025161.17_120839907_120849601_1	chr11	+	2147	5	FSM	ENSMUSG00000025161.17	ENSMUST00000100130.10	2386	5	14	225	0	0	multi-exon	FALSE	canonical	3	33	junction_1	128.437484793186	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTTCTGGCCCTCATTAG	NA	False	NA	22	True	NA	NA	NA	120839906	120849601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120839977_120846051_120846296_120846624_120846769_120847180_120847949_120848680
ENSMUSG00000025161.17_120839907_120849601_2	chr11	+	2242	6	FSM	ENSMUSG00000025161.17	ENSMUST00000168579.8	4335	6	0	2093	0	0	multi-exon	FALSE	canonical	3	280	junction_1	37.4197808652055	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTTCTGGCCCTCATTAG	NA	False	NA	22	True	NA	NA	NA	120839906	120849601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120839977_120844999_120845095_120846051_120846296_120846624_120846769_120847180_120847949_120848680
ENSMUSG00000025162.19_120854248_120881885_1	chr11	-	1794	10	FSM	ENSMUSG00000025162.19	ENSMUST00000070575.14	3500	10	33	1673	-8	226	multi-exon	TRUE	canonical	3	176	junction_1	174.428237039028	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTTTTATTGTTTCT	1047	False	NA	17	True	AAGAAA	-1	NA	120881885	120854247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120854733_120855773_120855837_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
ENSMUSG00000025162.19_120854248_120881885_2	chr11	-	1731	9	FSM	ENSMUSG00000025162.19	ENSMUST00000018274.10	3675	9	271	1673	-8	226	multi-exon	FALSE	canonical	3	400	junction_1	79.8474130764423	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTTTTATTGTTTCT	1047	False	NA	17	True	AAGAAA	-1	NA	120881885	120854247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120854733_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
ENSMUSG00000025162.19_120854248_120882156_2	chr11	-	2002	9	FSM	ENSMUSG00000025162.19	ENSMUST00000018274.10	3675	9	0	1673	0	226	multi-exon	FALSE	canonical	3	400	junction_1	79.8474130764423	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTTTTATTGTTTCT	776	False	NA	17	True	AAGAAA	-1	NA	120882156	120854247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120854733_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
ENSMUSG00000025169.7_121092699_121095537_1	chr11	-	591	3	NNC	ENSMUSG00000025169.7	novel	1308	9	NA	NA	0	-24282	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	107.5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGTCCTGGGAGTCTA	NA	False	NA	NA	False	AATAAA	-21	NA	121095537	121092698	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_121092849_121093716_121093935_121095314
ENSMUSG00000025171.3_41969952_42022154_1	chr19	+	439	3	NNC	ENSMUSG00000025171.3	novel	1529	3	NA	NA	-250	20	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	51	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTAGTGTGCGCCGTGAAT	NA	False	NA	NA	False	NA	NA	NA	41969951	42022154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_41970036_42020327_42020556_42022027
ENSMUSG00000025171.3_41969952_42022154_2	chr19	+	851	3	FSM	ENSMUSG00000025171.3	ENSMUST00000026170.3	1529	3	-250	928	-250	20	multi-exon	FALSE	canonical	3	94	junction_1	5.5	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTAGTGTGCGCCGTGAAT	NA	False	NA	NA	False	NA	NA	NA	41969951	42022154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_41970448_42020327_42020556_42022027
ENSMUSG00000025171.3_41969952_42023082_1	chr19	+	1367	3	NNC	ENSMUSG00000025171.3	novel	1529	3	NA	NA	-250	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	51	77	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTAGCACATGACTTCC	NA	False	NA	10	True	AATAAA	-16	NA	41969951	42023082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_41970036_42020327_42020556_42022027
ENSMUSG00000025173.14_121218050_121245219_1	chr11	-	2235	10	NNC	ENSMUSG00000025173.14	novel	2321	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_4	138.714023252567	579	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAGAGCCATATGTAATG	NA	False	NA	1	True	AATAAA	-33	NA	121245219	121218049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221025_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
ENSMUSG00000025184.11_42507261_42579809_1	chr19	+	1286	6	FSM	ENSMUSG00000025184.11	ENSMUST00000160107.2	950	6	24	-360	0	360	multi-exon	FALSE	canonical	1	2	junction_1	35.4942248823664	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTATGGTGTTTATAAAT	NA	False	NA	NA	False	ATTAAA	-20	NA	42507260	42579809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_42507297_42564464_42564641_42570358_42570430_42571263_42571360_42571841_42571983_42579043
ENSMUSG00000025188.16_42757923_42768398_1	chr19	-	813	6	ISM	ENSMUSG00000025188.16	ENSMUST00000069298.13	3196	18	6	11403	0	-2673	5prime_fragment	FALSE	canonical	3	80	junction_5	24.5715282390005	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATTGTCCTGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	42768398	42757922	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768352
ENSMUSG00000025190.14_43488191_43512977_1	chr19	-	1986	9	NNC	ENSMUSG00000025190.14	novel	2058	9	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	277.551346600949	1983	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTTTGTGATCCATTCA	8384	False	NA	-3	True	NA	NA	NA	43512977	43488190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_43488992_43491346_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
ENSMUSG00000025190.14_43488191_43512977_2	chr19	-	1988	9	NNC	ENSMUSG00000025190.14	novel	2058	9	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	281.088953891824	1986	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTTTGTGATCCATTCA	8384	False	NA	-3	True	NA	NA	NA	43512977	43488190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_43488997_43491346_43491490_43492960_43493120_43493210_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
ENSMUSG00000025190.14_43488609_43512977_1	chr19	-	1573	9	FSM	ENSMUSG00000025190.14	ENSMUST00000026196.14	2058	9	67	418	-53	145	multi-exon	FALSE	canonical	3	761	junction_5	49.6934351801121	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTAATCACCTTGCCTTC	8384	False	NA	-5	True	AATAAA	-18	NA	43512977	43488608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_43488997_43491346_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
ENSMUSG00000025193.15_43741537_43757072_1	chr19	+	1198	9	FSM	ENSMUSG00000025193.15	ENSMUST00000026199.14	1298	9	102	-2	0	2	multi-exon	FALSE	canonical	3	9	junction_5	8.4400459121974	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTATAGTCTCAGGTT	9274	False	NA	11	True	AATAAA	-14	NA	43741536	43757072	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_43741660_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751341_43751446_43753398_43753427_43755639_43755746_43756613
ENSMUSG00000025197.10_43993461_43996079_1	chr19	-	917	3	NNC	ENSMUSG00000025197.10	novel	1916	9	NA	NA	21559	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_2	7	54	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTTGTATGTTTGACT	9510	False	NA	NA	False	AATAAA	-18	NA	43996079	43993460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_43994062_43995462_43995605_43995905
ENSMUSG00000025202.9_44226012_44230461_1	chr19	+	901	3	FSM	ENSMUSG00000025202.9	ENSMUST00000237324.2	655	3	-242	-4	-242	4	multi-exon	FALSE	canonical	3	31	junction_1	4	253	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAAATTCTCCTGTTCTT	NA	False	NA	11	True	ATTAAA	-29	NA	44226011	44230461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_44226317_44226814_44227048_44230098
ENSMUSG00000025208.10_44993378_44994881_1	chr19	-	1288	3	FSM	ENSMUSG00000025208.10	ENSMUST00000097715.4	1398	3	0	110	0	-110	multi-exon	FALSE	canonical	3	460	junction_1	27.5	4209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAGTGTTTAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	44994881	44993377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_44994380_44994501_44994609_44994702
ENSMUSG00000025208.10_44993589_44994881_1	chr19	-	1077	3	FSM	ENSMUSG00000025208.10	ENSMUST00000097715.4	1398	3	0	321	0	-321	multi-exon	FALSE	canonical	3	460	junction_1	27.5	3786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAGTCATTAAGACTATA	NA	False	NA	NA	False	NA	NA	NA	44994881	44993588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_44994380_44994501_44994609_44994702
ENSMUSG00000025208.10_44993861_44994881_1	chr19	-	805	3	FSM	ENSMUSG00000025208.10	ENSMUST00000097715.4	1398	3	0	593	0	390	multi-exon	FALSE	canonical	3	460	junction_1	27.5	3272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAGAGTCTGGAGGCTGT	NA	False	NA	-2	True	AAAACA	-3	NA	44994881	44993860	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_44994380_44994501_44994609_44994702
ENSMUSG00000025217.16_45352272_45517733_1	chr19	+	2177	15	FSM	ENSMUSG00000025217.16	ENSMUST00000065601.13	2978	15	82	719	0	1	multi-exon	FALSE	canonical	3	261	junction_1	116.411041625118	2559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTCTCTTGCTTTGCCG	NA	False	NA	18	True	TATAAA	-20	NA	45352271	45517733	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_45352326_45411571_45411680_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
ENSMUSG00000025217.16_45505529_45517733_1	chr19	+	749	5	ISM	ENSMUSG00000025217.16	ENSMUST00000224478.2	2194	14	71582	-1	71582	1	3prime_fragment	FALSE	canonical	3	590	junction_4	37.3120288914983	2098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTCTCTTGCTTTGCCG	NA	False	NA	18	True	TATAAA	-20	NA	45505528	45517733	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
ENSMUSG00000025217.16_45505529_45517733_2	chr19	+	731	5	NNC	ENSMUSG00000025217.16	novel	2194	14	NA	NA	71582	1	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_4	243.290335812995	296	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTCTCTTGCTTTGCCG	NA	False	NA	18	True	TATAAA	-20	NA	45505528	45517733	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517429
ENSMUSG00000025223.16_46021032_46022549_1	chr19	-	822	2	ISM	ENSMUSG00000025223.16	ENSMUST00000152946.8	2108	11	11104	0	768	0	3prime_fragment	FALSE	canonical	3	192	junction_1	0	531	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACTCATGTTCCCCTATT	9023	False	NA	-30	True	ATTAAA	-21	NA	46022549	46021031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_46021781_46022476
ENSMUSG00000025226.12_46316988_46318885_1	chr19	+	1131	3	ISM	ENSMUSG00000025226.12	ENSMUST00000177667.2	1243	5	362	-1	362	0	3prime_fragment	FALSE	canonical	3	21	junction_2	5	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGTGGTGCATAGGGGAC	6678	False	NA	9	True	AATAAA	-18	NA	46316987	46318885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_46317268_46317526_46318033_46318540
ENSMUSG00000025228.6_46366747_46384180_1	chr19	-	1254	11	FSM	ENSMUSG00000025228.6	ENSMUST00000040270.6	2757	11	6	1497	-3	-1167	multi-exon	FALSE	canonical	3	273	junction_3	19.222122671547	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGGAGTGTTTGAGAGGAA	NA	False	NA	NA	False	TTTAAA	-15	NA	46384180	46366746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_46366909_46367046_46367088_46367851_46367914_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370858_46372658_46372785_46373451_46373528_46375890_46375956_46384068
ENSMUSG00000025232.9_59446975_59472392_1	chr9	+	1839	14	NNC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	152	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	341.497970572777	2957	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTTGGGTTGCTTGTGT	NA	False	NA	32	True	AATAAA	-24	NA	59446974	59472392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59469578_59469652_59470149_59470334_59470506_59470598_59471165_59471271_59472108
ENSMUSG00000025232.9_59446975_59472392_2	chr9	+	1838	14	NNC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	152	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	342.684546229987	2916	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTTGGGTTGCTTGTGT	NA	False	NA	32	True	AATAAA	-24	NA	59446974	59472392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59469578_59469652_59470149_59470334_59470506_59470598_59471171_59471271_59472103
ENSMUSG00000025236.12_59229273_59260732_1	chr9	+	2459	16	Genic_Genomic	ENSMUSG00000025236.12	novel	2490	6	NA	NA	10342	29397	multi-exon	FALSE	non_canonical	0	0	junction_1	0	319	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCGCGACCGGAAGCCGA	NA	False	NA	NA	False	NA	NA	NA	59229272	59260732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_59230266_59230670_59230873_59231319_59231462_59232072_59232143_59234469_59234642_59234738_59234892_59235862_59235932_59237700_59237756_59240762_59240891_59243646_59243701_59247093_59247167_59248369_59248482_59249770_59249835_59251342_59251423_59253082_59253135_59260692
ENSMUSG00000025245.15_123528717_123546627_1	chr9	-	1367	10	FSM	ENSMUSG00000025245.15	ENSMUST00000026274.14	4070	10	63	2640	-9	401	multi-exon	FALSE	canonical	3	87	junction_9	8.45905169363301	734	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAATTTATCTAATCATC	NA	False	NA	3	True	AATAAA	-21	NA	123546627	123528716	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_123529169_123529934_123530039_123531189_123531367_123536973_123537052_123537137_123537204_123538618_123538691_123540100_123540162_123541494_123541690_123544364_123544490_123546590
ENSMUSG00000025257.6_150787578_150799266_1	chrX	-	1522	8	NIC	ENSMUSG00000025257.6	novel	1508	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_7	33.0126753640761	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTGTCGTAAGAGTA	NA	False	NA	-2	True	AATAAA	-17	NA	150799266	150787577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_150787807_150787914_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799119
ENSMUSG00000025264.13_149872477_149879519_1	chrX	-	1389	5	FSM	ENSMUSG00000025264.13	ENSMUST00000112683.9	3796	5	20	2387	0	0	multi-exon	FALSE	canonical	3	302	junction_1	26.3201443765037	3072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTATCCATTGTCCTCCCC	NA	False	NA	-3	True	AATAAA	-21	NA	149879519	149872476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_149873411_149873600_149873778_149874671_149874764_149879160_149879252_149879424
ENSMUSG00000025264.13_149872477_149879519_2	chrX	-	1398	5	FSM	ENSMUSG00000025264.13	ENSMUST00000026295.10	3804	5	20	2386	0	0	multi-exon	FALSE	canonical	3	72	junction_1	125.415310070182	2836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTATCCATTGTCCTCCCC	NA	False	NA	-3	True	AATAAA	-21	NA	149879519	149872476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_149873411_149873591_149873778_149874671_149874764_149879160_149879252_149879424
ENSMUSG00000025264.13_149872477_149879519_3	chrX	-	1307	4	NIC	ENSMUSG00000025264.13	novel	1318	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_3	147.521749808856	722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTATCCATTGTCCTCCCC	NA	False	NA	-3	True	AATAAA	-21	NA	149879519	149872476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_149873411_149873591_149873778_149874671_149874764_149879424
ENSMUSG00000025265.15_149872477_149879519_1	chrX	+	1391	5	NNC	ENSMUSG00000025265.15	novel	3240	18	NA	NA	3371	7002	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2779	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTGGCTCCCAGGCAGCCC	NA	False	NA	NA	False	NA	NA	NA	149872476	149879519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_149873404_149873591_149873778_149874671_149874764_149879160_149879252_149879424
ENSMUSG00000025268.16_149589420_149595954_1	chrX	-	2150	13	NIC	ENSMUSG00000025268.16	novel	2183	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	35	junction_12	45.1259810604342	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTATTGCCATTTTTG	NA	False	NA	-3	True	NA	NA	NA	149595954	149589419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149595816
ENSMUSG00000025268.16_149589420_149595954_2	chrX	-	2233	12	ISM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	749	3	0	0	3prime_fragment	FALSE	canonical	3	154	junction_9	18.0545546095372	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTATTGCCATTTTTG	NA	False	NA	-3	True	NA	NA	NA	149595954	149589419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666
ENSMUSG00000025271.14_149371252_149426874_1	chrX	+	1907	16	NNC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	16	junction_2	17.171552702718	200	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371251	149426874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_149371339_149371940_149372041_149372935_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ENSMUSG00000025271.14_149371252_149426874_2	chrX	+	1894	16	NIC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_2	10.2058806577385	197	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371251	149426874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_149371339_149371940_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ENSMUSG00000025271.14_149371252_149426874_3	chrX	+	1965	16	NNC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	17.7330827049958	200	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371251	149426874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_149371410_149371940_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ENSMUSG00000025271.14_149371252_149426874_4	chrX	+	2050	16	NIC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	0	0	combination_of_known_junctions	TRUE	non_canonical	0	0	junction_5	25.4287676111569	195	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371251	149426874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_149371339_149371940_149372041_149372791_149373081_149391581_149391708_149394001_149394096_149395909_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
ENSMUSG00000025277.15_14413745_14466854_1	chr14	-	1474	9	FSM	ENSMUSG00000025277.15	ENSMUST00000166497.9	2226	9	17	735	0	-637	multi-exon	FALSE	canonical	3	60	junction_8	7.63216876123687	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTGTTGTTGTTGCTTCCG	NA	False	NA	-4	True	ATTAAA	-14	NA	14466854	14413744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14441383_14441537_14466809
ENSMUSG00000025277.15_14413745_14466854_2	chr14	-	1321	8	FSM	ENSMUSG00000025277.15	ENSMUST00000225234.2	1958	8	0	637	0	-637	multi-exon	FALSE	canonical	3	7	junction_7	23.7589940005541	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTGTTGTTGTTGCTTCCG	NA	False	NA	-4	True	ATTAAA	-14	NA	14466854	14413744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14466809
ENSMUSG00000025277.15_14413867_14466854_1	chr14	-	1199	8	FSM	ENSMUSG00000025277.15	ENSMUST00000225234.2	1958	8	0	759	0	-759	multi-exon	FALSE	canonical	3	7	junction_7	23.7589940005541	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTACCAGAAGTCTTCAAG	NA	False	NA	NA	False	NA	NA	NA	14466854	14413866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14466809
ENSMUSG00000025277.15_14413867_14466854_2	chr14	-	1352	9	FSM	ENSMUSG00000025277.15	ENSMUST00000166497.9	2226	9	17	857	0	-759	multi-exon	FALSE	canonical	3	60	junction_8	7.63216876123687	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTACCAGAAGTCTTCAAG	NA	False	NA	NA	False	NA	NA	NA	14466854	14413866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14441383_14441537_14466809
ENSMUSG00000025280.9_24527284_24537077_1	chr14	-	1375	9	NNC	ENSMUSG00000025280.9	novel	775	3	NA	NA	0	-5710	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	46.1923627345474	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	24537077	24527283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_24527381_24529173_24529311_24529426_24529590_24529703_24529944_24532447_24532603_24532854_24533027_24534185_24534324_24534454_24534591_24536940
ENSMUSG00000025283.16_153996128_153999207_1	chrX	-	924	6	FSM	ENSMUSG00000025283.16	ENSMUST00000026318.15	1162	6	238	0	116	0	multi-exon	FALSE	canonical	3	1003	junction_1	103.839106313566	2434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGCATTTTTACTAGT	NA	False	NA	-7	True	AATAAA	-24	NA	153999207	153996127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998596_153998681_153998780_153998833_153999098
ENSMUSG00000025283.16_153996128_153999341_1	chrX	-	1058	6	FSM	ENSMUSG00000025283.16	ENSMUST00000026318.15	1162	6	104	0	0	0	multi-exon	FALSE	canonical	3	1003	junction_1	103.839106313566	8775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGCATTTTTACTAGT	NA	False	NA	-7	True	AATAAA	-24	NA	153999341	153996127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998596_153998681_153998780_153998833_153999098
ENSMUSG00000025287.16_154045439_154080504_1	chrX	+	1606	15	FSM	ENSMUSG00000025287.16	ENSMUST00000026324.10	1752	15	0	146	0	-138	multi-exon	FALSE	canonical	2	666	junction_2	111.349262068796	3230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTTCACTTTGCTTTG	NA	False	NA	17	True	AATAAA	-17	NA	154045438	154080504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ENSMUSG00000025287.16_154045501_154080504_1	chrX	+	1640	17	NNC	ENSMUSG00000025287.16	novel	1740	16	NA	NA	0	-138	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	387.663146099484	202	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTTCACTTTGCTTTG	NA	False	NA	17	True	AATAAA	-17	NA	154045500	154080504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_154045671_154046363_154046402_154047031_154047090_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ENSMUSG00000025287.16_154045501_154080504_2	chrX	+	1539	15	NNC	ENSMUSG00000025287.16	novel	1740	16	NA	NA	0	-138	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	275.348915941581	815	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTTCACTTTGCTTTG	NA	False	NA	17	True	AATAAA	-17	NA	154045500	154080504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056134_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ENSMUSG00000025287.16_154045501_154080504_3	chrX	+	1602	16	FSM	ENSMUSG00000025287.16	ENSMUST00000131332.8	1740	16	0	138	0	-138	multi-exon	FALSE	canonical	2	22	junction_1	338.793873747577	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTTCACTTTGCTTTG	NA	False	NA	17	True	AATAAA	-17	NA	154045500	154080504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_154045671_154047031_154047090_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ENSMUSG00000025287.16_154045501_154080504_4	chrX	+	1547	15	NNC	ENSMUSG00000025287.16	novel	1740	16	NA	NA	0	-138	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	267.107570243961	876	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTTCACTTTGCTTTG	NA	False	NA	17	True	AATAAA	-17	NA	154045500	154080504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_154045671_154052654_154052759_154054953_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ENSMUSG00000025287.16_154045501_154080504_5	chrX	+	1553	15	NNC	ENSMUSG00000025287.16	novel	1740	16	NA	NA	0	-138	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	267.107570243961	993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTTCACTTTGCTTTG	NA	False	NA	17	True	AATAAA	-17	NA	154045500	154080504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_154045671_154052654_154052759_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ENSMUSG00000025287.16_154045501_154080504_6	chrX	+	1534	15	NNC	ENSMUSG00000025287.16	novel	1740	16	NA	NA	0	-138	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	274.990055478821	557	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTTCACTTTGCTTTG	NA	False	NA	17	True	AATAAA	-17	NA	154045500	154080504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078168_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ENSMUSG00000025287.16_154045501_154080644_1	chrX	+	1679	15	NNC	ENSMUSG00000025287.16	novel	1740	16	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	275.348915941581	2557	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACGATTGTGAGTCTCCCA	NA	False	NA	20	True	AATAAA	-14	NA	154045500	154080644	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056134_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ENSMUSG00000025287.16_154045501_154080644_4	chrX	+	1693	15	NNC	ENSMUSG00000025287.16	novel	1740	16	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	267.107570243961	3498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACGATTGTGAGTCTCCCA	NA	False	NA	20	True	AATAAA	-14	NA	154045500	154080644	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_154045671_154052654_154052759_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ENSMUSG00000025287.16_154045501_154080644_5	chrX	+	1687	15	NNC	ENSMUSG00000025287.16	novel	1740	16	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	267.107570243961	3494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACGATTGTGAGTCTCCCA	NA	False	NA	20	True	AATAAA	-14	NA	154045500	154080644	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_154045671_154052654_154052759_154054953_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ENSMUSG00000025290.18_24540786_24545927_1	chr14	+	518	5	NNC	ENSMUSG00000025290.18	novel	1613	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	5247.91465131627	119357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGCTCTGCTGCTTATT	NA	False	NA	18	True	AATAAA	-17	NA	24540785	24545927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543567_24545842
ENSMUSG00000025290.18_24540786_24545927_2	chr14	+	533	5	NNC	ENSMUSG00000025290.18	novel	1613	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	5246.65726915719	35789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGCTCTGCTGCTTATT	NA	False	NA	18	True	AATAAA	-17	NA	24540785	24545927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543588_24545848
ENSMUSG00000025290.18_24540786_24545927_3	chr14	+	507	5	NNC	ENSMUSG00000025290.18	novel	1613	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	5247.91465131627	37868	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGCTCTGCTGCTTATT	NA	False	NA	18	True	AATAAA	-17	NA	24540785	24545927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545848
ENSMUSG00000025290.18_24540786_24545927_4	chr14	+	539	5	NNC	ENSMUSG00000025290.18	novel	1613	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	5247.91465131627	97006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGCTCTGCTGCTTATT	NA	False	NA	18	True	AATAAA	-17	NA	24540785	24545927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543588_24545842
ENSMUSG00000025290.18_24540786_24545927_5	chr14	+	779	5	NIC	ENSMUSG00000025290.18	novel	714	6	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	776	junction_1	5312.66281515212	16906	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGCTCTGCTGCTTATT	NA	False	NA	18	True	AATAAA	-17	NA	24540785	24545927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_24541093_24541817_24541884_24541974_24542185_24543450_24543562_24545842
ENSMUSG00000025316.17_122677335_122752916_2	chr8	+	2194	13	FSM	ENSMUSG00000025316.17	ENSMUST00000026354.15	1970	13	16	-240	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	72.3410134171635	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCAGTGTTGTTG	NA	False	NA	7	True	AATAAA	-15	NA	122677334	122752916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
ENSMUSG00000025316.17_122677335_122752916_3	chr8	+	2185	13	FSM	ENSMUSG00000025316.17	ENSMUST00000093078.13	2289	13	104	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	55.5245191084283	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCAGTGTTGTTG	NA	False	NA	7	True	AATAAA	-15	NA	122677334	122752916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
ENSMUSG00000025317.8_122642153_122650651_1	chr8	-	1608	3	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20992	-712	3562	712	intron_retention	FALSE	canonical	3	94	junction_1	2	270	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCCTCCCCAACTGACT	NA	False	NA	NA	False	AATAAA	-18	NA	122650651	122642152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_122643247_122644726_122644883_122650293
ENSMUSG00000025317.8_122642153_122650685_1	chr8	-	1493	4	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20958	-712	3528	712	3prime_fragment	FALSE	canonical	3	63	junction_3	15.6418242755334	432	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCCTCCCCAACTGACT	NA	False	NA	NA	False	AATAAA	-18	NA	122650685	122642152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_122643247_122644726_122644883_122650293_122650357_122650505
ENSMUSG00000025317.8_122642865_122650629_1	chr8	-	844	5	NNC	ENSMUSG00000025317.8	novel	1249	7	NA	NA	3584	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	39.3660704160321	38	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGAGAGACCTGCTTTG	NA	False	NA	NA	False	AAAAAG	-1	NA	122650629	122642864	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_122643247_122644726_122644883_122647821_122647941_122650293_122650357_122650505
ENSMUSG00000025317.8_122642865_122650654_1	chr8	-	750	4	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20989	0	3559	0	3prime_fragment	FALSE	canonical	3	63	junction_3	15.6418242755334	318	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGAGAGACCTGCTTTG	NA	False	NA	NA	False	AAAAAG	-1	NA	122650654	122642864	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_122643247_122644726_122644883_122650293_122650357_122650505
ENSMUSG00000025317.8_122642865_122650685_1	chr8	-	930	3	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20958	0	3528	0	intron_retention	FALSE	canonical	3	94	junction_1	2	270	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGAGAGACCTGCTTTG	NA	False	NA	NA	False	AAAAAG	-1	NA	122650685	122642864	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_122643247_122644726_122644883_122650293
ENSMUSG00000025326.13_58926307_58954685_1	chr7	+	1474	8	ISM	ENSMUSG00000025326.13	ENSMUST00000107537.5	4911	11	47808	1790	-376	-5	3prime_fragment	FALSE	canonical	3	221	junction_3	26.2281979431859	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAGAAAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	58926306	58954685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454_58938529_58953415_58953560_58954557
ENSMUSG00000025329.4_140541713_140544822_1	chr4	-	1242	2	NNC	ENSMUSG00000025329.4	novel	3754	16	NA	NA	28267	-1419	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	111	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGGGTCAAGGCCGGAAG	NA	False	NA	NA	False	NA	NA	NA	140544822	140541712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_140542139_140544006
ENSMUSG00000025330.7_140472991_140477893_1	chr4	-	992	5	ISM	ENSMUSG00000025330.7	ENSMUST00000026381.7	2316	16	23654	-185	7343	185	3prime_fragment	TRUE	canonical	3	76	junction_4	19.8415599185145	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCACGGCTGGCAAGAT	NA	False	NA	NA	False	AATAAA	-17	NA	140477893	140472990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_140473669_140475396_140475538_140475768_140475837_140477659_140477763_140477891
ENSMUSG00000025330.7_140473176_140477893_1	chr4	-	936	4	ISM	ENSMUSG00000025330.7	ENSMUST00000026381.7	2316	16	23654	0	7343	0	intron_retention	FALSE	canonical	3	111	junction_1	6.94422221866655	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTAGTTTACCACGGAG	NA	False	NA	-11	True	AATAAA	-14	NA	140477893	140473175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_140473669_140475396_140475538_140475768_140475837_140477659
ENSMUSG00000025333.11_151564917_151591647_1	chrX	+	1656	9	FSM	ENSMUSG00000025333.11	ENSMUST00000026383.4	1586	9	-65	-5	0	5	multi-exon	FALSE	canonical	3	18	junction_8	3.91910385164772	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCATTTTGACATGGATTC	NA	False	NA	NA	False	AATAAA	-15	NA	151564916	151591647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_151565289_151568038_151568149_151569121_151569217_151573479_151573573_151576324_151576435_151578551_151578661_151580695_151580814_151581373_151581612_151591236
ENSMUSG00000025337.11_130274572_130284271_3	chr5	-	1514	5	FSM	ENSMUSG00000025337.11	ENSMUST00000139211.5	815	5	-25	-674	-25	0	multi-exon	FALSE	canonical	2	6	junction_4	362.983728974179	3762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTTGCATTTCTAGT	NA	False	NA	0	True	AATAAA	-17	NA	130284271	130274571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130283984
ENSMUSG00000025337.11_130274572_130284373_1	chr5	-	1410	6	NIC	ENSMUSG00000025337.11	novel	1548	5	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	14	junction_5	322.62758716514	1857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTTGCATTTCTAGT	NA	False	NA	0	True	AATAAA	-17	NA	130284373	130274571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130284050_130284152_130284291
ENSMUSG00000025337.11_130274572_130284373_2	chr5	-	1616	5	FSM	ENSMUSG00000025337.11	ENSMUST00000139211.5	815	5	-127	-674	-2	0	multi-exon	FALSE	canonical	2	6	junction_4	362.983728974179	3969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTTGCATTTCTAGT	NA	False	NA	0	True	AATAAA	-17	NA	130284373	130274571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130283984
ENSMUSG00000025337.11_130274572_130284373_4	chr5	-	1351	6	NIC	ENSMUSG00000025337.11	novel	1548	5	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	14	junction_5	403.977722158042	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTTGCATTTCTAGT	NA	False	NA	0	True	AATAAA	-17	NA	130284373	130274571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282851_130284050_130284152_130284291
ENSMUSG00000025337.11_130274966_130284373_2	chr5	-	957	6	NIC	ENSMUSG00000025337.11	novel	435	5	NA	NA	-2	280	combination_of_known_junctions	FALSE	canonical	2	14	junction_5	403.977722158042	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTCACTGCTGCGTCTG	NA	False	NA	-9	True	AATACA	-13	NA	130284373	130274965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282851_130284050_130284152_130284291
ENSMUSG00000025337.11_130274966_130284373_3	chr5	-	1016	6	NIC	ENSMUSG00000025337.11	novel	1548	5	NA	NA	-2	280	combination_of_known_junctions	FALSE	canonical	2	14	junction_5	322.62758716514	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTCACTGCTGCGTCTG	NA	False	NA	-9	True	AATACA	-13	NA	130284373	130274965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130284050_130284152_130284291
ENSMUSG00000025351.15_128745791_128748691_1	chr10	+	847	8	FSM	ENSMUSG00000025351.15	ENSMUST00000026407.9	1063	8	223	-7	0	0	multi-exon	FALSE	canonical	3	3700	junction_1	227.971623726484	42130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGGTCTCAGTTTATC	577	False	NA	35	True	ATTAAA	-27	NA	128745790	128748691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128745828_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
ENSMUSG00000025351.15_128745791_128748691_2	chr10	+	841	8	NNC	ENSMUSG00000025351.15	novel	1063	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1408.77615145131	40596	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGGTCTCAGTTTATC	577	False	NA	35	True	ATTAAA	-27	NA	128745790	128748691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_128745828_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748385_128748543
ENSMUSG00000025353.6_128641423_128654022_1	chr10	-	3027	7	NIC	ENSMUSG00000025353.6	novel	1573	4	NA	NA	3438	12348	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCACGGCCGCTTACTTC	NA	False	NA	NA	False	NA	NA	NA	128654022	128641422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_128641553_128642036_128643490_128649906_128650014_128650434_128650555_128652580_128652742_128652826_128652930_128653069
ENSMUSG00000025353.6_128654351_128657464_1	chr10	-	994	4	FSM	ENSMUSG00000025353.6	ENSMUST00000026409.5	1573	4	-1	580	-1	0	multi-exon	FALSE	canonical	3	462	junction_3	176.577335905703	5042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTCATAATGCTGGGGA	NA	False	NA	7	True	AATAAA	-45	NA	128657464	128654350	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128654885_128655822_128655975_128656129_128656384_128657410
ENSMUSG00000025353.6_128654351_128657464_2	chr10	-	989	4	NNC	ENSMUSG00000025353.6	novel	1051	4	NA	NA	-1	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	308.174553711943	3310	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTCATAATGCTGGGGA	NA	False	NA	7	True	AATAAA	-45	NA	128657464	128654350	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128654885_128655827_128655975_128656129_128656384_128657410
ENSMUSG00000025353.6_128654351_128657464_3	chr10	-	915	4	FSM	ENSMUSG00000025353.6	ENSMUST00000219524.2	724	4	50	-241	-1	0	multi-exon	FALSE	canonical	3	322	junction_3	240.049994792751	2236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTCATAATGCTGGGGA	NA	False	NA	7	True	AATAAA	-45	NA	128657464	128654350	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128654885_128655822_128655975_128656129_128656305_128657410
ENSMUSG00000025353.6_128654351_128657464_4	chr10	-	798	4	NNC	ENSMUSG00000025353.6	novel	1051	4	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_3	383.639877431369	564	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTCATAATGCTGGGGA	NA	False	NA	7	True	AATAAA	-45	NA	128657464	128654350	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128654885_128655822_128655975_128656129_128656188_128657410
ENSMUSG00000025359.11_128556005_128557385_1	chr10	+	892	4	NIC	ENSMUSG00000025359.11	novel	2130	11	NA	NA	13878	1278	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATCACGTGGTGGCTCA	NA	False	NA	NA	False	NA	NA	NA	128556004	128557385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_128556376_128556585_128556647_128556820_128556942_128557046
ENSMUSG00000025362.7_128460406_128462393_1	chr10	-	441	4	NNC	ENSMUSG00000025362.7	novel	681	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6503.17660839685	63072	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCATCGGAGTGTGTT	NA	False	NA	-12	True	NA	NA	NA	128462393	128460405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128460506_128461075_128461190_128461931_128462110_128462344
ENSMUSG00000025362.7_128460406_128462393_2	chr10	-	435	4	NNC	ENSMUSG00000025362.7	novel	681	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8754.3210029232	29840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCATCGGAGTGTGTT	NA	False	NA	-12	True	NA	NA	NA	128462393	128460405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128460479_128461071_128461207_128461931_128462110_128462344
ENSMUSG00000025362.7_128460406_128462393_3	chr10	-	447	4	NNC	ENSMUSG00000025362.7	novel	681	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6503.17660839685	151726	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCATCGGAGTGTGTT	NA	False	NA	-12	True	NA	NA	NA	128462393	128460405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128460506_128461075_128461196_128461931_128462110_128462344
ENSMUSG00000025362.7_128460406_128462393_4	chr10	-	447	4	NNC	ENSMUSG00000025362.7	novel	681	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	8985.52882262487	198556	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCATCGGAGTGTGTT	NA	False	NA	-12	True	NA	NA	NA	128462393	128460405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128460506_128461075_128461207_128461931_128462099_128462344
ENSMUSG00000025362.7_128460406_128462393_5	chr10	-	445	4	NNC	ENSMUSG00000025362.7	novel	681	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6503.17660839685	122059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCATCGGAGTGTGTT	NA	False	NA	-12	True	NA	NA	NA	128462393	128460405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128460506_128461075_128461190_128461927_128462110_128462344
ENSMUSG00000025362.7_128460406_128462393_6	chr10	-	429	4	NNC	ENSMUSG00000025362.7	novel	681	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6503.17660839685	6894	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCATCGGAGTGTGTT	NA	False	NA	-12	True	NA	NA	NA	128462393	128460405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128460506_128461075_128461178_128461931_128462110_128462344
ENSMUSG00000025364.14_128394508_128401637_1	chr10	-	1393	12	FSM	ENSMUSG00000025364.14	ENSMUST00000026425.13	2432	12	166	873	101	-871	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	2664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACCGTCGTCAAGCCCCT	8911	False	NA	-13	True	AATAAA	-15	NA	128401637	128394507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
ENSMUSG00000025364.14_128394508_128401880_1	chr10	-	1636	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	-24	871	-24	-871	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	16484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACCGTCGTCAAGCCCCT	8668	False	NA	-13	True	AATAAA	-15	NA	128401880	128394507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
ENSMUSG00000025364.14_128394508_128401880_2	chr10	-	1631	12	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-24	-871	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	600.350930431045	15230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACCGTCGTCAAGCCCCT	8668	False	NA	-13	True	AATAAA	-15	NA	128401880	128394507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398780_128398930_128399005_128399092_128399199_128399445_128399575_128401608
ENSMUSG00000025369.16_128295177_128301597_1	chr10	+	873	7	ISM	ENSMUSG00000025369.16	ENSMUST00000105235.10	4032	28	-13	23628	0	-3140	5prime_fragment	FALSE	canonical	3	89	junction_2	10.4788146064121	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTTGTGTGTGTGTGT	2681	False	NA	NA	False	NA	NA	NA	128295176	128301597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305
ENSMUSG00000025369.16_128295177_128301597_2	chr10	+	773	8	NNC	ENSMUSG00000025369.16	novel	4562	29	NA	NA	0	-3140	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	35.9194109310363	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTTGTGTGTGTGTGT	2681	False	NA	NA	False	NA	NA	NA	128295176	128301597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305_128301376_128301475
ENSMUSG00000025373.15_128247526_128275295_1	chr10	+	2321	7	FSM	ENSMUSG00000025373.15	ENSMUST00000096386.13	3144	7	-89	912	0	0	multi-exon	FALSE	canonical	3	111	junction_5	11.6535640709422	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTATGCCCTTTCTTTGGC	226	False	NA	NA	False	AAGAAA	-38	NA	128247525	128275295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128247695_128250987_128251171_128264459_128264573_128271181_128271454_128272336_128272473_128273176_128273281_128273951
ENSMUSG00000025373.15_128247615_128274625_1	chr10	+	1562	7	FSM	ENSMUSG00000025373.15	ENSMUST00000096386.13	3144	7	0	1582	0	-661	multi-exon	FALSE	canonical	3	111	junction_5	11.6535640709422	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATCAGGGTAGAGTGAGGC	315	False	NA	NA	False	AAGAAA	-16	NA	128247614	128274625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128247695_128250987_128251171_128264459_128264573_128271181_128271454_128272336_128272473_128273176_128273281_128273951
ENSMUSG00000025374.14_128237264_128245640_1	chr10	-	1027	7	FSM	ENSMUSG00000025374.14	ENSMUST00000026439.14	1130	7	103	0	-35	0	multi-exon	FALSE	canonical	3	274	junction_1	32.5444140965679	1751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTCTGTGTTTCTC	NA	False	NA	-7	True	AATAAA	-13	NA	128245640	128237263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115_128245218_128245604
ENSMUSG00000025381.4_128158328_128163056_1	chr10	+	960	6	NIC	ENSMUSG00000025381.4	novel	1383	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	1028.12695714099	9658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACTGTGTTGTCTTTTTT	NA	False	NA	33	True	AATGAA	-29	NA	128158327	128163056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_128158588_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
ENSMUSG00000025381.4_128158414_128163056_1	chr10	+	924	6	NNC	ENSMUSG00000025381.4	novel	1383	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1037.90300124819	15490	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACTGTGTTGTCTTTTTT	NA	False	NA	33	True	AATGAA	-29	NA	128158413	128163056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_128158645_128159198_128159312_128159459_128159569_128161932_128162137_128162445_128162543_128162886
ENSMUSG00000025381.4_128158414_128163056_2	chr10	+	874	6	NIC	ENSMUSG00000025381.4	novel	1383	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	1028.12695714099	7483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACTGTGTTGTCTTTTTT	NA	False	NA	33	True	AATGAA	-29	NA	128158413	128163056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_128158588_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
ENSMUSG00000025381.4_128158590_128163056_1	chr10	+	796	6	NNC	ENSMUSG00000025381.4	novel	1383	6	NA	NA	-126	0	at_least_one_novel_splicesite	FALSE	canonical	3	205	junction_1	975.319024729857	5208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACTGTGTTGTCTTTTTT	NA	False	NA	33	True	AATGAA	-29	NA	128158589	128163056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_128158686_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
ENSMUSG00000025381.4_128158590_128163056_2	chr10	+	755	6	FSM	ENSMUSG00000025381.4	ENSMUST00000219037.2	1383	6	262	366	-126	0	multi-exon	FALSE	canonical	3	1395	junction_2	667.271938567778	5760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACTGTGTTGTCTTTTTT	NA	False	NA	33	True	AATGAA	-29	NA	128158589	128163056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128158645_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
ENSMUSG00000025384.16_120266996_120269561_1	chr11	-	1686	2	ISM	ENSMUSG00000025384.16	ENSMUST00000154826.2	2934	4	1	3144	0	0	5prime_fragment	FALSE	canonical	3	20	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-29	NA	120269561	120266995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_120268488_120269367
ENSMUSG00000025384.16_120268391_120269561_2	chr11	-	410	3	FSM	ENSMUSG00000025384.16	ENSMUST00000148520.2	1779	3	-26	1395	0	-242	multi-exon	FALSE	canonical	3	28	junction_2	20.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGCCTTCACCGTGCT	NA	False	NA	NA	False	NA	NA	NA	120269561	120268390	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120268488_120269153_120269273_120269367
ENSMUSG00000025393.13_127919175_127926029_1	chr10	+	1647	10	NNC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3385.75991069058	437	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGCGAGAGCTCAGGTT	NA	False	NA	-91	True	NA	NA	NA	127919174	127926029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_127919323_127919760_127919944_127920170_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
ENSMUSG00000025393.13_127919175_127926029_2	chr10	+	1652	10	FSM	ENSMUSG00000025393.13	ENSMUST00000026459.6	1916	10	33	231	0	0	multi-exon	FALSE	canonical	3	8904	junction_3	854.417771581948	1303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGCGAGAGCTCAGGTT	NA	False	NA	-91	True	NA	NA	NA	127919174	127926029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
ENSMUSG00000025393.13_127919175_127926142_1	chr10	+	1747	10	NNC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	149	junction_8	3325.05740784007	9948	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	22	True	AATAAA	-15	NA	127919174	127926142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924843_127925028_127925887
ENSMUSG00000025393.13_127919175_127926142_2	chr10	+	1755	10	NNC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3366.35001077751	19500	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	22	True	AATAAA	-15	NA	127919174	127926142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_127919313_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
ENSMUSG00000025393.13_127919175_127926142_3	chr10	+	1749	10	NNC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3385.75991069058	11635	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	22	True	AATAAA	-15	NA	127919174	127926142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_127919323_127919760_127919928_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
ENSMUSG00000025393.13_127919175_127926142_4	chr10	+	1770	10	NNC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	3318.14612824617	26694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	22	True	AATAAA	-15	NA	127919174	127926142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925033_127925887
ENSMUSG00000025393.13_127919175_127926142_5	chr10	+	1760	10	NNC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3385.75991069058	25691	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	22	True	AATAAA	-15	NA	127919174	127926142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_127919323_127919760_127919944_127920170_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
ENSMUSG00000025395.15_127851065_127865736_1	chr10	+	1385	13	NNC	ENSMUSG00000025395.15	novel	1536	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	189.963593003151	2668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCCTCAATCCTTGAAGC	1008	False	NA	25	True	AATAAA	-18	NA	127851064	127865736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858832_127859445_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
ENSMUSG00000025395.15_127851065_127865861_1	chr10	+	1510	13	NNC	ENSMUSG00000025395.15	novel	1583	13	NA	NA	0	9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	189.963593003151	5286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTTTGTAAAATGTATTA	1008	False	NA	11	True	AATAAA	-21	NA	127851064	127865861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858832_127859445_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
ENSMUSG00000025395.15_127851065_127865861_2	chr10	+	1352	12	NNC	ENSMUSG00000025395.15	novel	1583	13	NA	NA	0	9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	261.437286065807	700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTTTGTAAAATGTATTA	1008	False	NA	11	True	AATAAA	-21	NA	127851064	127865861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_127851221_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858832_127859445_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
ENSMUSG00000025402.13_127494247_127496830_1	chr10	-	1512	5	NNC	ENSMUSG00000025402.13	novel	2311	6	NA	NA	4520	2540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	192	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTAGGAAGGGGCTGGTC	NA	False	NA	NA	False	GGGGCT	-3	NA	127496830	127494246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_127494331_127494497_127494570_127495301_127495368_127495457_127495587_127495669
ENSMUSG00000025402.13_127496787_127500400_1	chr10	-	1448	5	ISM	ENSMUSG00000025402.13	ENSMUST00000099157.4	2311	6	2101	-1	950	0	3prime_fragment	FALSE	canonical	3	27	junction_1	18.389874931603	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCATGGCCCCCTTCCCCTC	NA	False	NA	-1	True	AATAAA	-21	NA	127500400	127496786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_127497649_127499000_127499134_127499218_127499271_127499608_127499743_127500133
ENSMUSG00000025403.6_127352992_127358255_1	chr10	-	2222	13	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	578.432940509673	2907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCTGCTTCTGTTTGATC	NA	False	NA	-5	True	AATGAA	-15	NA	127358255	127352991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_127353626_127353650_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ENSMUSG00000025403.6_127353186_127358255_1	chr10	-	2028	13	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	0	-178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	578.432940509673	2540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	-6	True	AATAAA	-13	NA	127358255	127353185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_127353626_127353650_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ENSMUSG00000025403.6_127353186_127358255_2	chr10	-	2024	13	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	0	-178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	578.432940509673	2592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	-6	True	AATAAA	-13	NA	127358255	127353185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_127353623_127353651_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ENSMUSG00000025403.6_127353186_127358255_3	chr10	-	2019	13	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	0	-178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	664.696672676091	1465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	-6	True	AATAAA	-13	NA	127358255	127353185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_127353626_127353650_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127358156
ENSMUSG00000025403.6_127353186_127358255_4	chr10	-	2053	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	58	178	0	-178	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	2737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	-6	True	AATAAA	-13	NA	127358255	127353185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ENSMUSG00000025403.6_127353186_127358255_5	chr10	-	2048	12	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	0	-178	at_least_one_novel_splicesite	FALSE	canonical	2	38	junction_1	590.561408203672	1841	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	-6	True	AATAAA	-13	NA	127358255	127353185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_127353781_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ENSMUSG00000025403.6_127353490_127358255_1	chr10	-	1715	13	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	0	112	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	664.696672676091	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGCTGAGATTTCTGA	NA	False	NA	-10	True	CATAAA	-14	NA	127358255	127353489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_127353626_127353650_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127358156
ENSMUSG00000025403.6_127353490_127358255_2	chr10	-	1749	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	58	482	0	112	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGCTGAGATTTCTGA	NA	False	NA	-10	True	CATAAA	-14	NA	127358255	127353489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ENSMUSG00000025403.6_127353490_127358255_3	chr10	-	1724	13	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	0	112	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	578.432940509673	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGCTGAGATTTCTGA	NA	False	NA	-10	True	CATAAA	-14	NA	127358255	127353489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_127353626_127353650_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ENSMUSG00000025407.8_127161963_127165815_1	chr10	-	1516	11	NNC	ENSMUSG00000025407.8	novel	4057	13	NA	NA	7109	3788	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCTGCTACCAGTTAACA	1178	False	NA	NA	False	AAAACA	-2	NA	127165815	127161962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_127162111_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
ENSMUSG00000025408.16_127126662_127132157_1	chr10	+	823	3	FSM	ENSMUSG00000025408.16	ENSMUST00000139091.2	600	3	0	-223	0	0	multi-exon	FALSE	canonical	0	0	junction_1	357	8911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCACTTTTTCTTCTT	NA	False	NA	29	True	AGTAAA	-18	NA	127126661	127132157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127126761_127131189_127131348_127131591
ENSMUSG00000025410.11_127102256_127117676_1	chr10	+	1641	14	FSM	ENSMUSG00000025410.11	ENSMUST00000026479.11	1784	14	0	143	0	-143	multi-exon	FALSE	canonical	3	604	junction_8	36.9826442582377	1509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGCTGTGTTCCTGGA	9216	False	NA	23	True	ATTAAA	-18	NA	127102255	127117676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
ENSMUSG00000025421.16_77031823_77058597_1	chr18	+	1036	7	FSM	ENSMUSG00000025421.16	ENSMUST00000097522.11	5477	7	35	4406	0	-504	multi-exon	FALSE	canonical	0	0	junction_2	128.264050562372	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGAGCTGAGATTTTGTG	NA	False	NA	NA	False	TATAAA	-22	NA	77031822	77058597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_77031882_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
ENSMUSG00000025421.16_77031823_77059101_1	chr18	+	1540	7	FSM	ENSMUSG00000025421.16	ENSMUST00000097522.11	5477	7	35	3902	0	0	multi-exon	FALSE	canonical	0	0	junction_2	128.264050562372	1179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAATTAGACATTGTT	NA	False	NA	19	True	NA	NA	NA	77031822	77059101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_77031882_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
ENSMUSG00000025423.17_77126125_77234497_1	chr18	+	1921	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26779	-136	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	376.676732685662	260	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATTGGAAAAGAGCTTGA	6306	False	NA	7	True	AATAAA	-17	NA	77126124	77234497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_77126175_77126529_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
ENSMUSG00000025423.17_77126125_77234635_1	chr18	+	2059	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26779	2	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	376.676732685662	502	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTAGCATTTATGCTTT	6306	False	NA	21	True	ATTAAA	-33	NA	77126124	77234635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_77126175_77126529_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
ENSMUSG00000025423.17_77126251_77234497_1	chr18	+	2150	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	-136	at_least_one_novel_splicesite	FALSE	canonical	3	417	junction_12	260.606810582959	696	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATTGGAAAAGAGCTTGA	6432	False	NA	7	True	AATAAA	-17	NA	77126250	77234497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
ENSMUSG00000025423.17_77126251_77234497_2	chr18	+	2122	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	-136	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	397.186734137922	700	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATTGGAAAAGAGCTTGA	6432	False	NA	7	True	AATAAA	-17	NA	77126250	77234497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_77126373_77126400_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
ENSMUSG00000025423.17_77126251_77234635_1	chr18	+	2288	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	2	at_least_one_novel_splicesite	FALSE	canonical	3	417	junction_12	260.606810582959	787	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTAGCATTTATGCTTT	6432	False	NA	21	True	ATTAAA	-33	NA	77126250	77234635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
ENSMUSG00000025423.17_77152904_77240815_1	chr18	+	2379	14	FSM	ENSMUSG00000025423.17	ENSMUST00000114777.10	3060	14	0	681	0	2	multi-exon	FALSE	canonical	3	372	junction_1	299.077338556217	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTCTAATTAAAGATGTA	7899	False	NA	15	True	AATAAA	-28	NA	77152903	77240815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_77153116_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
ENSMUSG00000025428.16_77861692_77870212_1	chr18	+	1845	12	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	0	-143	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1586.70890746375	22564	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTAGTTTGTGTGGGGGTG	NA	False	NA	27	True	AATAAA	-15	NA	77861691	77870212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_77861811_77863476_77863556_77865224_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
ENSMUSG00000025428.16_77861692_77870569_1	chr18	+	2202	12	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1586.70890746375	35266	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTGGTTGATGAGTC	NA	False	NA	20	True	ATTAAA	-22	NA	77861691	77870569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_77861811_77863476_77863556_77865224_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
ENSMUSG00000025428.16_77861692_77870569_2	chr18	+	2208	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	263	0	0	0	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	35935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTGGTTGATGAGTC	NA	False	NA	20	True	ATTAAA	-22	NA	77861691	77870569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
ENSMUSG00000025437.16_152052126_152098975_1	chr3	+	3904	24	FSM	ENSMUSG00000025437.16	ENSMUST00000197748.5	4183	24	0	279	0	5	multi-exon	FALSE	canonical	3	245	junction_13	66.1683137664235	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAATGTTGAATTTATTTG	NA	False	NA	NA	False	AATAAA	-22	NA	152052125	152098975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080527_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
ENSMUSG00000025439.6_97345841_97368086_1	chr7	+	1498	7	NNC	ENSMUSG00000025439.6	novel	1504	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	460.094796995383	5144	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGCTGTGATTTTGCTCT	NA	False	NA	11	True	AATAAA	-17	NA	97345840	97368086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_97346077_97354795_97354933_97360906_97361006_97361833_97361942_97363119_97363288_97365657_97365747_97367425
ENSMUSG00000025439.6_97346042_97368086_1	chr7	+	1303	7	FSM	ENSMUSG00000025439.6	ENSMUST00000026506.5	1504	7	201	0	140	0	multi-exon	FALSE	canonical	3	1088	junction_4	64.1950153828161	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGCTGTGATTTTGCTCT	NA	False	NA	11	True	AATAAA	-17	NA	97346041	97368086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_97346077_97354795_97354933_97360906_97361006_97361833_97361942_97363113_97363288_97365657_97365747_97367425
ENSMUSG00000025451.16_119565033_119593855_1	chr13	+	1557	11	FSM	ENSMUSG00000025451.16	ENSMUST00000109203.9	1525	11	-104	72	-104	0	multi-exon	FALSE	canonical	3	93	junction_1	94.7694043454954	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTACAGTTAATTCTACT	NA	False	NA	37	True	NA	NA	NA	119565032	119593855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_119565177_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
ENSMUSG00000025464.16_139705621_139714247_1	chr7	+	1714	7	FSM	ENSMUSG00000025464.16	ENSMUST00000026537.13	4655	7	51	2890	0	0	multi-exon	FALSE	canonical	3	213	junction_2	25.7552583627758	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGTGTAGAGTACTTCT	NA	False	NA	22	True	CATAAA	-14	NA	139705620	139714247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_139705796_139706238_139706729_139707420_139707621_139708930_139709184_139711559_139711673_139712293_139712452_139713922
ENSMUSG00000025464.16_139705621_139714247_2	chr7	+	1708	7	NNC	ENSMUSG00000025464.16	novel	4655	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_6	96.0163469878379	640	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGTGTAGAGTACTTCT	NA	False	NA	22	True	CATAAA	-14	NA	139705620	139714247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_139705796_139706238_139706729_139707420_139707621_139708930_139709184_139711559_139711673_139712293_139712452_139713928
ENSMUSG00000025465.14_139686148_139696335_1	chr7	-	978	8	FSM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	54	525	0	-517	multi-exon	FALSE	canonical	3	1613	junction_2	95.2071854602651	1432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTAGTGTCGGCCACAGTT	NA	False	NA	-2	True	AATAAA	-14	NA	139696335	139686147	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139691709_139692331_139692460_139692848_139693047_139696219
ENSMUSG00000025466.20_139679383_139681889_1	chr7	-	732	6	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	140	junction_5	128.971934931597	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1936	False	NA	0	True	NA	NA	NA	139681889	139679382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681707
ENSMUSG00000025466.20_139679383_139682245_1	chr7	-	873	6	NNC	ENSMUSG00000025466.20	novel	685	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	171.429752376885	917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1580	False	NA	0	True	NA	NA	NA	139682245	139679382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681922
ENSMUSG00000025466.20_139679383_139682245_2	chr7	-	615	6	NNC	ENSMUSG00000025466.20	novel	685	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_5	177.394926646734	747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1580	False	NA	0	True	NA	NA	NA	139682245	139679382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682180
ENSMUSG00000025466.20_139679383_139682245_3	chr7	-	652	6	FSM	ENSMUSG00000025466.20	ENSMUST00000148716.8	1685	6	74	959	-2	0	multi-exon	FALSE	canonical	3	24	junction_1	178.471286205933	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1580	False	NA	0	True	NA	NA	NA	139682245	139679382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_139679620_139679715_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
ENSMUSG00000025466.20_139679383_139682245_4	chr7	-	802	6	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_5	162.288138814887	679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1580	False	NA	0	True	NA	NA	NA	139682245	139679382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681993
ENSMUSG00000025466.20_139679383_139682320_1	chr7	-	823	5	ISM	ENSMUSG00000025466.20	ENSMUST00000120034.8	680	6	-4	2700	-1	0	5prime_fragment	FALSE	canonical	3	247	junction_4	96.9278081873308	1364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1505	False	NA	0	True	NA	NA	NA	139682320	139679382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
ENSMUSG00000025468.16_139649800_139650728_1	chr7	-	651	2	ISM	ENSMUSG00000025468.16	ENSMUST00000211044.2	1029	6	11412	6	11412	0	3prime_fragment	FALSE	canonical	3	34	junction_1	0	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCTGGGTCGTGGTTTCTC	9451	False	NA	-7	True	AGTAAA	-11	NA	139650728	139649799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_139649947_139650224
ENSMUSG00000025470.12_139616325_139620514_1	chr7	+	1016	6	NNC	ENSMUSG00000025470.12	novel	1076	6	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_4	120.382058463876	193	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATCTGTTCTTCTTCAT	NA	False	NA	18	True	AATAAA	-15	NA	139616324	139620514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617495_139619238_139619359_139620155
ENSMUSG00000025470.12_139616325_139620514_2	chr7	+	1069	6	NNC	ENSMUSG00000025470.12	novel	1076	6	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_3	119.416916724558	1120	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATCTGTTCTTCTTCAT	NA	False	NA	18	True	AATAAA	-15	NA	139616324	139620514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_139616520_139616732_139616807_139617132_139617335_139617434_139617554_139619238_139619359_139620155
ENSMUSG00000025470.12_139616441_139620514_1	chr7	+	959	6	FSM	ENSMUSG00000025470.12	ENSMUST00000168194.3	1076	6	116	1	0	-1	multi-exon	FALSE	canonical	3	304	junction_1	28.032837887021	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATCTGTTCTTCTTCAT	NA	False	NA	18	True	AATAAA	-15	NA	139616440	139620514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238_139619359_139620155
ENSMUSG00000025474.10_139616325_139620514_2	chr7	-	1122	6	NNC	ENSMUSG00000025474.10	novel	3060	18	NA	NA	-3932	-5392	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACGGACGTGACGTCTAC	NA	False	NA	NA	False	NA	NA	NA	139620514	139616324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238_139619406_139620155
ENSMUSG00000025474.10_139616325_139620514_3	chr7	-	1070	6	NNC	ENSMUSG00000025474.10	novel	3060	18	NA	NA	-3932	-5392	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1146	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACGGACGTGACGTCTAC	NA	False	NA	NA	False	NA	NA	NA	139620514	139616324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619243_139619359_139620155
ENSMUSG00000025474.10_139616325_139620514_4	chr7	-	1001	5	NIC	ENSMUSG00000025474.10	novel	3060	18	NA	NA	-3932	-5392	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACGGACGTGACGTCTAC	NA	False	NA	NA	False	NA	NA	NA	139620514	139616324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_139616520_139617132_139617335_139617428_139617554_139619238_139619359_139620155
ENSMUSG00000025480.6_140357142_140367767_2	chr7	-	1399	12	NIC	ENSMUSG00000025480.6	novel	1460	13	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_11	47.3902385596844	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTATATTGTGTGTG	NA	False	NA	0	True	AATAAA	-18	NA	140367767	140357141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360445_140360787_140360848_140367648
ENSMUSG00000025480.6_140357142_140367767_3	chr7	-	1454	13	NNC	ENSMUSG00000025480.6	novel	1460	13	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	49.2382952814394	595	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTATATTGTGTGTG	NA	False	NA	0	True	AATAAA	-18	NA	140367767	140357141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360437_140360787_140360848_140361939_140362003_140367648
ENSMUSG00000025481.13_140415042_140417879_1	chr7	+	790	4	NIC	ENSMUSG00000025481.13	novel	719	4	NA	NA	111	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	111.547697819762	1811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAATCTGAACCTATCATT	NA	False	NA	27	True	AATAAA	-17	NA	140415041	140417879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_140415172_140415524_140415665_140416659_140416796_140417495
ENSMUSG00000025481.13_140415042_140417879_2	chr7	+	687	4	FSM	ENSMUSG00000025481.13	ENSMUST00000106050.8	719	4	111	-79	111	0	multi-exon	FALSE	canonical	3	242	junction_1	5.43650214343336	2357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAATCTGAACCTATCATT	NA	False	NA	27	True	AATAAA	-17	NA	140415041	140417879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140415172_140415524_140415665_140416659_140416796_140417598
ENSMUSG00000025484.10_140433307_140436230_1	chr7	-	1617	3	ISM	ENSMUSG00000025484.10	ENSMUST00000210710.2	489	4	1260	-1397	0	0	3prime_fragment	FALSE	canonical	3	105	junction_1	3	765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGTCTCTATGTCTGTGT	NA	False	NA	-10	True	CATAAA	-31	NA	140436230	140433306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_140434735_140434986_140435079_140436133
ENSMUSG00000025484.10_140433307_140436230_2	chr7	-	1476	4	FSM	ENSMUSG00000025484.10	ENSMUST00000026557.10	2268	4	792	0	0	0	multi-exon	FALSE	canonical	3	105	junction_2	2.62466929133727	1113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGTCTCTATGTCTGTGT	NA	False	NA	-10	True	CATAAA	-31	NA	140436230	140433306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140434537_140434677_140434735_140434986_140435079_140436133
ENSMUSG00000025484.10_140434283_140436230_1	chr7	-	641	3	ISM	ENSMUSG00000025484.10	ENSMUST00000210710.2	489	4	1260	-421	0	0	3prime_fragment	FALSE	canonical	3	105	junction_1	3	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTTTGAAATTATCATCA	NA	False	NA	NA	False	NA	NA	NA	140436230	140434282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_140434735_140434986_140435079_140436133
ENSMUSG00000025484.10_140434283_140436230_2	chr7	-	893	2	NIC	ENSMUSG00000025484.10	novel	719	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	111	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTTTGAAATTATCATCA	NA	False	NA	NA	False	NA	NA	NA	140436230	140434282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_140435079_140436133
ENSMUSG00000025484.10_140434283_140436230_3	chr7	-	500	4	FSM	ENSMUSG00000025484.10	ENSMUST00000026557.10	2268	4	792	976	0	0	multi-exon	FALSE	canonical	3	105	junction_2	2.62466929133727	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTTTGAAATTATCATCA	NA	False	NA	NA	False	NA	NA	NA	140436230	140434282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140434537_140434677_140434735_140434986_140435079_140436133
ENSMUSG00000025485.14_140437228_140443056_1	chr7	+	2461	10	FSM	ENSMUSG00000025485.14	ENSMUST00000026558.7	3406	10	358	587	0	0	multi-exon	FALSE	canonical	3	213	junction_2	23.6648408268052	813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGTTTAACATTCATGAT	NA	False	NA	9	True	ATTAAA	-16	NA	140437227	140443056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140437468_140437757_140437806_140437894_140438486_140438775_140438868_140439351_140439503_140440789_140440886_140440985_140441131_140441208_140441354_140441752_140441873_140442223
ENSMUSG00000025485.14_140437335_140443056_1	chr7	+	2354	10	FSM	ENSMUSG00000025485.14	ENSMUST00000026558.7	3406	10	465	587	0	0	multi-exon	FALSE	canonical	3	213	junction_2	23.6648408268052	838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGTTTAACATTCATGAT	NA	False	NA	9	True	ATTAAA	-16	NA	140437334	140443056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140437468_140437757_140437806_140437894_140438486_140438775_140438868_140439351_140439503_140440789_140440886_140440985_140441131_140441208_140441354_140441752_140441873_140442223
ENSMUSG00000025485.14_140443583_140461755_1	chr7	+	1295	7	NIC	ENSMUSG00000025485.14	novel	1942	8	NA	NA	2497	17470	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGGTCAAGCGCCATCCG	NA	False	NA	NA	False	NA	NA	NA	140443582	140461755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140457965_140461675
ENSMUSG00000025485.14_140443583_140461755_2	chr7	+	1389	7	NIC	ENSMUSG00000025485.14	novel	1942	8	NA	NA	2497	17470	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGGTCAAGCGCCATCCG	NA	False	NA	NA	False	NA	NA	NA	140443582	140461755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458059_140461675
ENSMUSG00000025486.18_140443583_140461755_1	chr7	-	1381	7	NIC	ENSMUSG00000025486.18	novel	1416	7	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_6	62.3475919520732	993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	False	NA	-14	True	AATAAA	-14	NA	140461755	140443582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458051_140461675
ENSMUSG00000025486.18_140443583_140461755_2	chr7	-	1227	6	NIC	ENSMUSG00000025486.18	novel	1416	7	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_2	89.0999438832595	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	False	NA	-14	True	AATAAA	-14	NA	140461755	140443582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_140443997_140444887_140445098_140456266_140456368_140457562_140457796_140457869_140458059_140461675
ENSMUSG00000025487.16_140462327_140478555_1	chr7	+	1534	13	NNC	ENSMUSG00000025487.16	novel	1989	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	359.02424670518	5155	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTGCTTCTGTTCTT	NA	False	NA	28	True	AATAAA	-16	NA	140462326	140478555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477402_140477520_140477638_140478105
ENSMUSG00000025487.16_140462327_140478555_2	chr7	+	1537	13	NNC	ENSMUSG00000025487.16	novel	1989	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	359.386282431592	6885	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTGCTTCTGTTCTT	NA	False	NA	28	True	AATAAA	-16	NA	140462326	140478555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478111
ENSMUSG00000025487.16_140462327_140478555_3	chr7	+	1533	13	NNC	ENSMUSG00000025487.16	novel	1989	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	360.24840002729	6627	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTGCTTCTGTTCTT	NA	False	NA	28	True	AATAAA	-16	NA	140462326	140478555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474403_140474457_140477329_140477411_140477520_140477638_140478105
ENSMUSG00000025487.16_140462327_140478555_4	chr7	+	1542	13	NNC	ENSMUSG00000025487.16	novel	1989	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	359.02424670518	8017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTGCTTCTGTTCTT	NA	False	NA	28	True	AATAAA	-16	NA	140462326	140478555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477416_140477526_140477638_140478105
ENSMUSG00000025491.15_140548144_140549738_1	chr7	+	545	2	FSM	ENSMUSG00000025491.15	ENSMUST00000026564.9	736	2	191	0	191	0	multi-exon	FALSE	canonical	3	1139	junction_1	0	7362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTAGTCCTGTGTTGAGT	NA	False	NA	24	True	AATAAA	-28	NA	140548143	140549738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140548352_140549401
ENSMUSG00000025494.9_140671088_140676652_1	chr7	-	1670	10	NIC	ENSMUSG00000025494.9	novel	1990	10	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	3	90	junction_9	19.9616917069288	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676652	140671087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676532
ENSMUSG00000025494.9_140671088_140676754_1	chr7	-	1772	10	NIC	ENSMUSG00000025494.9	novel	1990	10	NA	NA	-102	0	combination_of_known_splicesites	FALSE	canonical	3	90	junction_9	19.9616917069288	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676754	140671087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676532
ENSMUSG00000025494.9_140671088_140676754_2	chr7	-	2073	9	NIC	ENSMUSG00000025494.9	novel	1897	9	NA	NA	-102	0	intron_retention	FALSE	canonical	3	90	junction_8	21.1527185014125	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676754	140671087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676532
ENSMUSG00000025495.16_140711214_140736067_1	chr7	+	2157	12	FSM	ENSMUSG00000025495.16	ENSMUST00000026568.10	3624	12	15	1452	0	552	multi-exon	FALSE	canonical	3	293	junction_1	17.146910185967	2800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATAGCCTCTGGCTGCCCTT	6825	False	NA	11	True	AATAAA	-16	NA	140711213	140736067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734723_140734910_140735246
ENSMUSG00000025495.16_140711214_140736067_2	chr7	+	2030	12	NIC	ENSMUSG00000025495.16	novel	3624	12	NA	NA	0	552	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	88.9139243899021	2623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATAGCCTCTGGCTGCCCTT	6825	False	NA	11	True	AATAAA	-16	NA	140711213	140736067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734850_140734910_140735246
ENSMUSG00000025495.16_140711214_140736067_3	chr7	+	2006	10	NIC	ENSMUSG00000025495.16	novel	3624	12	NA	NA	0	552	combination_of_known_splicesites	FALSE	canonical	1	4	junction_2	99.4836049523789	2462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATAGCCTCTGGCTGCCCTT	6825	False	NA	11	True	AATAAA	-16	NA	140711213	140736067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_140711431_140715221_140715324_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734723_140734910_140735246
ENSMUSG00000025499.19_140770843_140772395_1	chr7	-	821	4	ISM	ENSMUSG00000025499.19	ENSMUST00000124314.3	1073	5	458	3	458	0	3prime_fragment	FALSE	canonical	3	72	junction_2	236.66760563194	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTGTCTCTGGCTGGA	786	False	NA	-6	True	AGTAAA	-14	NA	140772395	140770842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_140771381_140771867_140771950_140772043_140772204_140772354
ENSMUSG00000025499.19_140770843_140772395_2	chr7	-	739	3	ISM	ENSMUSG00000025499.19	ENSMUST00000097957.11	1199	5	1523	4	458	0	3prime_fragment	FALSE	canonical	3	437	junction_1	70.5	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTGTCTCTGGCTGGA	786	False	NA	-6	True	AGTAAA	-14	NA	140772395	140770842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_140771381_140772043_140772204_140772354
ENSMUSG00000025499.19_140770843_140773795_1	chr7	-	925	6	FSM	ENSMUSG00000025499.19	ENSMUST00000026572.11	2828	6	78	1825	0	0	multi-exon	FALSE	canonical	3	237	junction_1	141.994366085419	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTGTCTCTGGCTGGA	NA	False	NA	-6	True	AGTAAA	-14	NA	140773795	140770842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140771108_140771254_140771381_140772043_140772204_140772354_140772534_140772742_140772895_140773752
ENSMUSG00000025508.14_141027544_141031262_1	chr7	+	448	5	NNC	ENSMUSG00000025508.14	novel	964	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	213	junction_1	6078.86463494623	169504	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCCTTTAAACATTTTG	2378	False	NA	26	True	AATAAA	-19	NA	141027543	141031262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_141027602_141027820_141027945_141028638_141028688_141030916_141031016_141031144
ENSMUSG00000025508.14_141027582_141031262_1	chr7	+	409	5	NNC	ENSMUSG00000025508.14	novel	964	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6159.35911337373	24323	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCCTTTAAACATTTTG	2416	False	NA	26	True	AATAAA	-19	NA	141027581	141031262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_141027621_141027820_141027945_141028638_141028688_141030916_141031016_141031164
ENSMUSG00000025508.14_141027582_141031262_2	chr7	+	418	5	NNC	ENSMUSG00000025508.14	novel	964	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6159.35911337373	63178	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCCTTTAAACATTTTG	2416	False	NA	26	True	AATAAA	-19	NA	141027581	141031262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_141027621_141027820_141027945_141028638_141028688_141030916_141031016_141031155
ENSMUSG00000025508.14_141027582_141031262_3	chr7	+	407	5	NNC	ENSMUSG00000025508.14	novel	964	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	213	junction_1	7304.48132997819	12740	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCCTTTAAACATTTTG	2416	False	NA	26	True	AATAAA	-19	NA	141027581	141031262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_141027602_141027820_141027945_141028638_141028688_141030916_141031016_141031147
ENSMUSG00000025508.14_141027582_141031262_4	chr7	+	410	5	NNC	ENSMUSG00000025508.14	novel	964	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	213	junction_1	6078.86463494623	24359	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCCTTTAAACATTTTG	2416	False	NA	26	True	AATAAA	-19	NA	141027581	141031262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_141027602_141027820_141027945_141028638_141028688_141030916_141031016_141031144
ENSMUSG00000025508.14_141027582_141031262_5	chr7	+	414	5	NNC	ENSMUSG00000025508.14	novel	964	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6168.54680516408	43558	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCCTTTAAACATTTTG	2416	False	NA	26	True	AATAAA	-19	NA	141027581	141031262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_141027606_141027820_141027945_141028638_141028688_141030916_141031016_141031144
ENSMUSG00000025508.14_141027582_141031262_6	chr7	+	411	5	NNC	ENSMUSG00000025508.14	novel	964	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6159.35911337373	49537	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCCTTTAAACATTTTG	2416	False	NA	26	True	AATAAA	-19	NA	141027581	141031262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_141027621_141027820_141027945_141028638_141028688_141030916_141030998_141031144
ENSMUSG00000025508.14_141027763_141031262_1	chr7	+	443	4	NNC	ENSMUSG00000025508.14	novel	449	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7082.89250392961	10117	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCCTTTAAACATTTTG	2597	False	NA	26	True	AATAAA	-19	NA	141027762	141031262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_141027945_141028638_141028688_141030916_141031016_141031149
ENSMUSG00000025509.16_141035119_141040005_1	chr7	+	1966	9	FSM	ENSMUSG00000025509.16	ENSMUST00000164016.8	2625	9	8	651	0	0	multi-exon	FALSE	canonical	3	56	junction_3	8.3132048573339	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTCCTCACTTCTGCAT	9953	False	NA	17	True	AATAAA	-18	NA	141035118	141040005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_141035387_141037185_141037419_141037504_141037571_141037917_141038128_141038342_141038404_141038504_141038673_141038757_141038891_141039079_141039203_141039301
ENSMUSG00000025511.16_141055343_141073335_1	chr7	+	1271	8	FSM	ENSMUSG00000025511.16	ENSMUST00000026585.14	1466	8	190	5	-80	1	multi-exon	FALSE	canonical	3	56	junction_1	68.6787850082111	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAACTGAGGAAGTTCTTT	3681	False	NA	40	True	NA	NA	NA	141055342	141073335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_141055411_141062399_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
ENSMUSG00000025512.16_141061977_141073335_1	chr7	-	1626	7	NIC	ENSMUSG00000025512.16	novel	3964	11	NA	NA	33045	11072	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGCCAGACACCTGCGGGC	NA	False	NA	NA	False	NA	NA	NA	141073335	141061976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
ENSMUSG00000025512.16_141091688_141119732_1	chr7	-	1315	11	NIC	ENSMUSG00000025512.16	novel	889	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	64.9046223315412	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAAGTCTTCCATTGGTC	NA	False	NA	NA	False	NA	NA	NA	141119732	141091687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_141091953_141093646_141093803_141095314_141095417_141102521_141102615_141106344_141106407_141107511_141107619_141108375_141108421_141109481_141109615_141110062_141110213_141112731_141112887_141119685
ENSMUSG00000025525.13_111221063_111282127_1	chrX	+	897	8	NIC	ENSMUSG00000025525.13	novel	1359	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	139.560973434992	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAAGTGGTAAAATCATAA	NA	False	NA	8	True	AATAAA	-16	NA	111221062	111282127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_111221134_111255934_111256055_111259497_111259553_111260996_111261096_111263857_111263950_111273853_111273968_111274158_111274268_111281890
ENSMUSG00000025525.13_111221063_111282127_2	chrX	+	1002	9	FSM	ENSMUSG00000025525.13	ENSMUST00000026599.10	1359	9	32	325	0	0	multi-exon	FALSE	canonical	3	334	junction_1	40.3205902734571	2930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAAGTGGTAAAATCATAA	NA	False	NA	8	True	AATAAA	-16	NA	111221062	111282127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_111221134_111243497_111243603_111255934_111256055_111259497_111259553_111260996_111261096_111263857_111263950_111273853_111273968_111274158_111274268_111281890
ENSMUSG00000025532.14_130058152_130089630_1	chr5	+	1376	5	FSM	ENSMUSG00000025532.14	ENSMUST00000202163.4	931	5	9	-454	0	0	multi-exon	FALSE	canonical	3	60	junction_3	138.212472302611	584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGCCACCATACCTGG	NA	False	NA	5	True	AAAACA	-1	NA	130058151	130089630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130077766_130077825_130088545
ENSMUSG00000025532.14_130058184_130088912_1	chr5	+	721	6	FSM	ENSMUSG00000025532.14	ENSMUST00000026608.11	1492	6	53	718	0	0	multi-exon	FALSE	canonical	3	269	junction_4	51.2382669496149	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGGGGTAGAAAGGCTTG	NA	False	NA	NA	False	GGGGCT	-26	NA	130058183	130088912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545
ENSMUSG00000025532.14_130058184_130089630_1	chr5	+	1526	6	FSM	ENSMUSG00000025532.14	ENSMUST00000156729.2	669	6	0	-857	0	0	multi-exon	FALSE	canonical	3	25	junction_1	131.765549367048	835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGCCACCATACCTGG	NA	False	NA	5	True	AAAACA	-1	NA	130058183	130089630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_130058336_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545
ENSMUSG00000025533.16_130040345_130053186_1	chr5	-	1628	17	NIC	ENSMUSG00000025533.16	novel	2413	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	7	junction_16	77.2141654345237	1124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAGCATATGCTTCTGC	NA	False	NA	-10	True	AATAAA	-21	NA	130053186	130040344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882_130052938_130053048
ENSMUSG00000025534.18_130017852_130024524_1	chr5	-	1227	4	ISM	ENSMUSG00000025534.18	ENSMUST00000201801.4	2272	11	7145	-12	-5041	0	3prime_fragment	FALSE	canonical	3	97	junction_3	8.73053390247253	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTCTTTCGTTACTATC	NA	False	NA	NA	False	NA	NA	NA	130024524	130017851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287
ENSMUSG00000025534.18_130017852_130031708_1	chr5	-	2505	12	FSM	ENSMUSG00000025534.18	ENSMUST00000026613.14	2687	12	182	0	-2	0	multi-exon	TRUE	canonical	3	83	junction_6	16.6092675514317	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTCTTTCGTTACTATC	NA	False	NA	NA	False	NA	NA	NA	130031708	130017851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767_130028911_130029201_130029384_130029597_130029784_130031447
ENSMUSG00000025534.18_130028440_130031708_1	chr5	-	1100	4	FSM	ENSMUSG00000025534.18	ENSMUST00000111308.8	2038	4	-2	940	-2	0	multi-exon	FALSE	canonical	3	115	junction_2	11.5854314646552	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTCGCTATTGTCTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	130031708	130028439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_130028911_130029201_130029384_130029597_130029784_130031447
ENSMUSG00000025538.16_129875852_129887723_1	chr5	+	1184	6	ISM	ENSMUSG00000025538.16	ENSMUST00000171300.8	2264	9	25	5168	0	-3916	5prime_fragment	FALSE	canonical	3	472	junction_3	14.4692777981487	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACAGAC	NA	False	NA	NA	False	NA	NA	NA	129875851	129887723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_129875928_129878741_129878899_129881714_129881827_129882863_129882909_129883528_129883680_129887080
ENSMUSG00000025538.16_129875852_129890803_1	chr5	+	1205	9	NNC	ENSMUSG00000025538.16	novel	2264	9	NA	NA	0	-836	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_8	158.290427300579	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGGGTCTTCCTACTTC	NA	False	NA	NA	False	NA	NA	NA	129875851	129890803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129875928_129878741_129878899_129881714_129881827_129882863_129882909_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129890425
ENSMUSG00000025538.16_129875852_129892273_2	chr5	+	1621	9	FSM	ENSMUSG00000025538.16	ENSMUST00000171300.8	2264	9	25	618	0	0	multi-exon	FALSE	canonical	3	460	junction_6	14.1371629049113	1150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTTATTTATTTATTAT	NA	False	NA	16	True	AATAAA	-16	NA	129875851	129892273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129875928_129878741_129878899_129881714_129881827_129882863_129882909_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129891479
ENSMUSG00000025538.16_129875852_129892273_3	chr5	+	1464	8	NIC	ENSMUSG00000025538.16	novel	1656	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	161.455749924471	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTTATTTATTTATTAT	NA	False	NA	16	True	AATAAA	-16	NA	129875851	129892273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_129875928_129881714_129881827_129882863_129882909_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129891479
ENSMUSG00000025544.14_122344550_122396745_2	chr14	+	2736	17	FSM	ENSMUSG00000025544.14	ENSMUST00000026624.11	3107	17	100	271	0	-271	multi-exon	FALSE	canonical	3	817	junction_12	125.603480743967	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTGTATCACTCCCTGC	NA	False	NA	31	True	AATAAA	-16	NA	122344549	122396745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
ENSMUSG00000025545.11_122408705_122639639_1	chr14	+	1426	8	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	-10411	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	243.750374149373	1009	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTAAGCTTATGGTTTTG	NA	False	NA	5	True	AATAAA	-15	NA	122408704	122639639	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_122408985_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
ENSMUSG00000025545.11_122419116_122639646_1	chr14	+	742	4	NIC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_3	306.768461366042	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	12	True	AATAAA	-22	NA	122419115	122639646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_122419194_122548655_122548843_122608652_122608842_122639358
ENSMUSG00000025545.11_122419116_122639646_2	chr14	+	1044	7	NIC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	31	junction_1	249.458357691664	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	12	True	AATAAA	-22	NA	122419115	122639646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_122419194_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
ENSMUSG00000025545.11_122514914_122615599_1	chr14	+	964	5	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	19461	-24040	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	245.382864112391	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCATGTTCAAGAATGTATG	NA	False	NA	4	True	AATAAA	-17	NA	122514913	122615599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_122514996_122548655_122548843_122608652_122608842_122613293_122613396_122615195
ENSMUSG00000025545.11_122514914_122639646_1	chr14	+	1235	8	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	19461	0	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	209.063900005989	1127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	12	True	AATAAA	-22	NA	122514913	122639646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_122514996_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
ENSMUSG00000025574.14_117706352_117716673_1	chr11	-	1177	6	NNC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	425.922340339175	4332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	False	NA	-17	True	ATTAAA	-16	NA	117716673	117706351	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716525
ENSMUSG00000025574.14_117706352_117716673_2	chr11	-	1163	6	NIC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	149	junction_5	366.911215418662	4299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	False	NA	-17	True	ATTAAA	-16	NA	117716673	117706351	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716539
ENSMUSG00000025574.14_117706352_117716673_3	chr11	-	1208	6	NNC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	425.922340339175	4323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	False	NA	-17	True	ATTAAA	-16	NA	117716673	117706351	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715653_117716539
ENSMUSG00000025574.14_117706352_117716673_4	chr11	-	1195	7	FSM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	245	0	0	0	multi-exon	FALSE	canonical	3	796	junction_5	107.729084074615	4508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	False	NA	-17	True	ATTAAA	-16	NA	117716673	117706351	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716426_117716459_117716539
ENSMUSG00000025575.15_118298470_118309850_1	chr11	-	1490	5	FSM	ENSMUSG00000025575.15	ENSMUST00000106288.8	2873	5	28	1355	-1	0	multi-exon	FALSE	canonical	3	81	junction_4	37.662979170533	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCGTTTGCTTTTTTTCTT	9020	False	NA	NA	False	CATAAA	-17	NA	118309850	118298469	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399_118308481_118309755
ENSMUSG00000025579.15_119158852_119176281_1	chr11	+	3495	20	FSM	ENSMUSG00000025579.15	ENSMUST00000106259.9	3633	20	139	-1	0	1	multi-exon	TRUE	canonical	3	393	junction_7	40.3001893687597	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCACGTCACCTCATGT	NA	False	NA	20	True	AATAAA	-21	NA	119158851	119176281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_119159049_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
ENSMUSG00000025579.15_119174597_119176281_1	chr11	+	811	4	ISM	ENSMUSG00000025579.15	ENSMUST00000026666.13	3363	20	15745	-1	4895	1	3prime_fragment	FALSE	canonical	3	499	junction_1	18.4089350286454	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCACGTCACCTCATGT	NA	False	NA	20	True	AATAAA	-21	NA	119174596	119176281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_119174639_119174884_119175050_119175272_119175426_119175830
ENSMUSG00000025580.16_119179189_119190738_1	chr11	-	1332	12	FSM	ENSMUSG00000025580.16	ENSMUST00000026667.15	1509	12	177	0	102	0	multi-exon	FALSE	canonical	2	960	junction_1	150.634415963708	1275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	-10	True	ATTAAA	-20	NA	119190738	119179188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
ENSMUSG00000025580.16_119179189_119190844_1	chr11	-	1433	12	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	407.809528542735	5025	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	-10	True	ATTAAA	-20	NA	119190844	119179188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186303_119186362_119186892_119186960_119188630_119188704_119190653
ENSMUSG00000025580.16_119179189_119190844_2	chr11	-	1429	12	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	397.334528165785	2373	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	-10	True	ATTAAA	-20	NA	119190844	119179188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_119179386_119179485_119179605_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
ENSMUSG00000025580.16_119179189_119190844_3	chr11	-	1431	12	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	407.544633260179	4861	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	-10	True	ATTAAA	-20	NA	119190844	119179188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185403_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
ENSMUSG00000025580.16_119179189_119190844_4	chr11	-	1431	12	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	403.933633367276	4850	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	-10	True	ATTAAA	-20	NA	119190844	119179188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186355_119186892_119186960_119188630_119188704_119190653
ENSMUSG00000025580.16_119179189_119190915_1	chr11	-	1501	12	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	407.70342486252	5420	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	-10	True	ATTAAA	-20	NA	119190915	119179188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184725_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
ENSMUSG00000025591.7_66928995_66939173_1	chr8	-	1105	7	FSM	ENSMUSG00000025591.7	ENSMUST00000026681.7	4328	7	-2	3225	0	-2013	multi-exon	FALSE	canonical	3	650	junction_5	98.3165239870129	4723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTTAGTCTGCTT	NA	False	NA	97	True	AATACA	-1	NA	66939173	66928994	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935196_66936709_66936823_66939063
ENSMUSG00000025591.7_66929107_66939173_1	chr8	-	983	6	NNC	ENSMUSG00000025591.7	novel	4328	7	NA	NA	0	-2125	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	341.591803180346	805	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCTGTATGTAAGAATTT	NA	False	NA	-15	True	AATAAA	-15	NA	66939173	66929106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934228_66936709_66936823_66939063
ENSMUSG00000025591.7_66929107_66939173_2	chr8	-	993	7	FSM	ENSMUSG00000025591.7	ENSMUST00000026681.7	4328	7	-2	3337	0	-2125	multi-exon	FALSE	canonical	3	650	junction_5	98.3165239870129	4284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCTGTATGTAAGAATTT	NA	False	NA	-15	True	AATAAA	-15	NA	66939173	66929106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935196_66936709_66936823_66939063
ENSMUSG00000025607.16_30748411_30787326_1	chr6	-	1145	6	ISM	ENSMUSG00000025607.16	ENSMUST00000048774.13	3961	24	86348	858	86035	0	3prime_fragment	FALSE	canonical	3	201	junction_2	23.6727691662805	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCAAAGTTGCTATACT	NA	False	NA	-14	True	AATAAA	-15	NA	30787326	30748410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787265
ENSMUSG00000025607.16_30792369_30873687_1	chr6	-	2020	14	ISM	ENSMUSG00000025607.16	ENSMUST00000166192.7	3155	24	42	43958	-4	8269	5prime_fragment	FALSE	canonical	3	177	junction_5	22.345326345065	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCTTGTTTCATTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	30873687	30792368	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
ENSMUSG00000025607.16_30870369_30873687_1	chr6	-	400	4	NNC	ENSMUSG00000025607.16	novel	333	4	NA	NA	-4	1463	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	102.009803450453	111	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAGAGTTTTAATAAAATT	NA	False	NA	NA	False	AATAAA	-28	NA	30873687	30870368	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_30870543_30871781_30871863_30872476_30872530_30873595
ENSMUSG00000025609.16_31349830_31484905_1	chr6	+	2496	19	Fusion	ENSMUSG00000025609.16_ENSMUSG00000086855.2	novel	888	6	NA	NA	0	2	multi-exon	FALSE	canonical	0	0	junction_10	230.380636456975	601	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTATATTTTTCTTTAG	NA	False	NA	19	True	AATAAA	-27	NA	31349829	31484905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr6_+_31349909_31351616_31351696_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409873_31410067_31426430_31426509_31428453_31428520_31435889_31436007_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31476821_31476877_31484559
ENSMUSG00000025609.16_31375771_31484905_1	chr6	+	2453	18	FSM	ENSMUSG00000025609.16	ENSMUST00000026699.15	11395	18	101	8841	0	2	multi-exon	FALSE	canonical	1	225	junction_9	99.990726213583	627	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTATATTTTTCTTTAG	NA	False	NA	19	True	AATAAA	-27	NA	31375770	31484905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409873_31410067_31426430_31426509_31428453_31428520_31435889_31436003_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31476821_31476877_31484559
ENSMUSG00000025613.14_87280763_87281813_1	chr16	-	313	2	ISM	ENSMUSG00000025613.14	ENSMUST00000177376.8	1567	14	10863	-113	1145	113	3prime_fragment	FALSE	canonical	3	4874	junction_1	0	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	-24	True	AATAAA	-14	NA	87281813	87280762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_87280954_87281691
ENSMUSG00000025613.14_87280763_87292747_1	chr16	-	1829	15	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	0	113	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	1305.48645441194	17132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	-24	True	AATAAA	-14	NA	87292747	87280762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288334_87290590_87290675_87291224_87291316_87292616
ENSMUSG00000025613.14_87280763_87292747_2	chr16	-	1820	15	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	0	113	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	1308.00241254536	10489	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	-24	True	AATAAA	-14	NA	87292747	87280762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287219_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
ENSMUSG00000025613.14_87280763_87292747_3	chr16	-	1740	14	NIC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	0	113	combination_of_known_junctions	FALSE	canonical	3	14	junction_13	1339.65113360282	6110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	-24	True	AATAAA	-14	NA	87292747	87280762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87292616
ENSMUSG00000025613.14_87280763_87292747_4	chr16	-	1824	15	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	0	113	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1308.27205909637	9020	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	-24	True	AATAAA	-14	NA	87292747	87280762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_87280954_87281691_87281805_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
ENSMUSG00000025616.15_87251915_87280198_1	chr16	+	2674	18	FSM	ENSMUSG00000025616.15	ENSMUST00000026710.12	3205	18	324	207	0	0	multi-exon	FALSE	canonical	3	153	junction_5	31.0441141639032	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGTTCACCTAAGTAAAT	NA	False	NA	NA	False	AATAAA	-16	NA	87251914	87280198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241_87267338_87268599_87268731_87268968_87269057_87269994_87270074_87271469_87271562_87272304_87272362_87273601_87273776_87276013_87276678_87277762_87277858_87278601_87278689_87279747_87279905_87279994
ENSMUSG00000025616.15_87251915_87280405_1	chr16	+	2881	18	FSM	ENSMUSG00000025616.15	ENSMUST00000026710.12	3205	18	324	0	0	0	multi-exon	FALSE	canonical	3	153	junction_5	31.0441141639032	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTATTAGAGTTTAAGT	NA	False	NA	10	True	AATAAA	-18	NA	87251914	87280405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241_87267338_87268599_87268731_87268968_87269057_87269994_87270074_87271469_87271562_87272304_87272362_87273601_87273776_87276013_87276678_87277762_87277858_87278601_87278689_87279747_87279905_87279994
ENSMUSG00000025616.15_87280214_87292747_2	chr16	+	2380	15	NIC	ENSMUSG00000025616.15	novel	3205	18	NA	NA	475	12342	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	18961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGGAATGGGCCTCGG	NA	False	NA	NA	False	NA	NA	NA	87280213	87292747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
ENSMUSG00000025626.17_52001143_52042882_1	chrX	+	1412	11	FSM	ENSMUSG00000025626.17	ENSMUST00000078944.13	4350	11	0	2938	0	-1960	multi-exon	FALSE	canonical	3	199	junction_10	29.4423164849507	411	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCCGACTCTTAGATCCT	NA	False	NA	10	True	AATAAA	-18	NA	52001142	52042882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_52001314_52005429_52005614_52006042_52006145_52020449_52020584_52020857_52020902_52029101_52029269_52029413_52029558_52031440_52031546_52034760_52034895_52042328_52042456_52042782
ENSMUSG00000025630.9_52077014_52110107_1	chrX	+	860	9	FSM	ENSMUSG00000025630.9	ENSMUST00000026723.9	1289	9	0	429	0	-429	multi-exon	FALSE	canonical	3	2155	junction_4	129.05328356923	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAATGTTACTGTTTTAT	NA	False	NA	27	True	AGTAAA	-20	NA	52077013	52110107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52101153_52101172_52105223_52105307_52108981_52109029_52109199_52109277_52109943
ENSMUSG00000025630.9_52077014_52110537_3	chrX	+	1272	8	NIC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	818.20507882829	9624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTTTTGAATTCTTTC	NA	False	NA	13	True	AATAAA	-17	NA	52077013	52110537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52105223_52105307_52108981_52109029_52109199_52109277_52109943
ENSMUSG00000025647.17_108867670_108886023_1	chr9	+	1051	6	FSM	ENSMUSG00000025647.17	ENSMUST00000112059.10	1910	6	37	822	0	0	multi-exon	FALSE	canonical	3	51	junction_2	78.9186923358465	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAAGGTGACCAGCCATG	NA	False	NA	NA	False	ATTAAA	-32	NA	108867669	108886023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108867833_108869937_108870095_108880431_108880522_108885045_108885162_108885354_108885574_108885717
ENSMUSG00000025647.17_108884016_108886792_1	chr9	+	1470	4	FSM	ENSMUSG00000025647.17	ENSMUST00000154184.5	1038	4	85	-517	0	0	multi-exon	FALSE	canonical	3	51	junction_1	98.8005847935909	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCTTTCTTCAGCGCCT	NA	False	NA	18	True	AATAAA	-18	NA	108884015	108886792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108884076_108885045_108885162_108885354_108885574_108885717
ENSMUSG00000025666.17_80114304_80138382_1	chrX	+	929	3	FSM	ENSMUSG00000025666.17	ENSMUST00000026760.3	4007	3	-18	3096	0	0	multi-exon	TRUE	canonical	3	148	junction_2	10.5	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTGACATCTTTTCTAAC	NA	False	NA	NA	False	AAAAAG	-28	NA	80114303	80138382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_80114767_80127896_80128038_80138057
ENSMUSG00000025666.17_80114304_80139451_1	chrX	+	1998	3	FSM	ENSMUSG00000025666.17	ENSMUST00000026760.3	4007	3	-18	2027	0	114	multi-exon	FALSE	canonical	3	148	junction_2	10.5	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAATGTCTTCATTTTA	NA	False	NA	NA	False	ATTAAA	-27	NA	80114303	80139451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_80114767_80127896_80128038_80138057
ENSMUSG00000025722.17_80541009_80550982_1	chr7	-	1541	8	FSM	ENSMUSG00000025722.17	ENSMUST00000026816.15	2114	8	35	538	0	0	multi-exon	FALSE	canonical	3	95	junction_7	16.071269840486	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGCAATTAGCAATTTA	NA	False	NA	-7	True	AATAAA	-20	NA	80550982	80541008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391_80550460_80550932
ENSMUSG00000025722.17_80541009_80550982_2	chr7	-	1452	7	NIC	ENSMUSG00000025722.17	novel	2114	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_4	46.1173021278951	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGCAATTAGCAATTTA	NA	False	NA	-7	True	AATAAA	-20	NA	80550982	80541008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80550095_80550185_80550391_80550460_80550932
ENSMUSG00000025722.17_80541009_80550982_4	chr7	-	2014	7	FSM	ENSMUSG00000025722.17	ENSMUST00000139990.8	2549	7	-2	537	0	0	multi-exon	FALSE	canonical	3	120	junction_4	7.94599829404014	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGCAATTAGCAATTTA	NA	False	NA	-7	True	AATAAA	-20	NA	80550982	80541008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391
ENSMUSG00000025724.13_80565125_80597293_1	chr7	-	1110	6	FSM	ENSMUSG00000025724.13	ENSMUST00000026818.12	1345	6	235	0	0	0	multi-exon	FALSE	canonical	3	936	junction_3	43.4391528462515	7775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTCCCTGAATTCTGT	1620	False	NA	-5	True	AATAAA	-18	NA	80597293	80565124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_80565653_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
ENSMUSG00000025724.13_80565314_80597293_1	chr7	-	921	6	FSM	ENSMUSG00000025724.13	ENSMUST00000026818.12	1345	6	235	189	0	0	multi-exon	FALSE	canonical	3	936	junction_3	43.4391528462515	6389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCCCAGTGTTTGTAT	1620	False	NA	-11	True	ATTAAA	-11	NA	80597293	80565313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_80565653_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
ENSMUSG00000025724.13_80565314_80597490_1	chr7	-	1118	6	FSM	ENSMUSG00000025724.13	ENSMUST00000026818.12	1345	6	38	189	0	0	multi-exon	FALSE	canonical	3	936	junction_3	43.4391528462515	6717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCCCAGTGTTTGTAT	1423	False	NA	-11	True	ATTAAA	-11	NA	80597490	80565313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_80565653_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
ENSMUSG00000025726.12_80791606_80814597_1	chr7	+	937	5	ISM	ENSMUSG00000025726.12	ENSMUST00000119083.2	2899	18	27008	5567	27008	-5567	internal_fragment	FALSE	canonical	3	108	junction_1	5.1478150704935	108	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGAGTCATAACCTAATG	NA	False	NA	NA	False	TATAAA	-20	NA	80791605	80814597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_80791793_80803147_80803274_80810712_80810844_80814018_80814188_80814273
ENSMUSG00000025726.12_80791606_80820164_1	chr7	+	1855	8	NIC	ENSMUSG00000025726.12	novel	2846	18	NA	NA	27008	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	42.0490481340493	372	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTACAGTGTG	NA	False	NA	11	True	AATAAA	-20	NA	80791605	80820164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_80791793_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
ENSMUSG00000025728.17_26145401_26160909_1	chr17	-	3054	11	FSM	ENSMUSG00000025728.17	ENSMUST00000026823.16	3173	11	113	6	0	0	multi-exon	FALSE	canonical	3	238	junction_4	23.9309423132479	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCAGCTTGGGTGTCCTG	NA	False	NA	-5	True	AATAAA	-18	NA	26160909	26145400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26160788
ENSMUSG00000025731.17_26094474_26096134_1	chr17	+	808	6	FSM	ENSMUSG00000025731.17	ENSMUST00000026827.16	1243	6	426	9	0	0	multi-exon	FALSE	canonical	3	287	junction_5	67.7542618585724	1408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATTGCTTGCTGGGAAT	7194	False	NA	30	True	AATAAA	-31	NA	26094473	26096134	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634_26095714_26095923
ENSMUSG00000025731.17_26094504_26096134_1	chr17	+	778	6	FSM	ENSMUSG00000025731.17	ENSMUST00000026827.16	1243	6	456	9	0	0	multi-exon	FALSE	canonical	3	287	junction_5	67.7542618585724	1305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATTGCTTGCTGGGAAT	7224	False	NA	30	True	AATAAA	-31	NA	26094503	26096134	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634_26095714_26095923
ENSMUSG00000025732.7_26082672_26087713_1	chr17	-	865	5	NIC	ENSMUSG00000025732.7	novel	842	5	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	117.099049953448	1420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCGGGTGTTGGTGATTG	7787	False	NA	-4	True	AATAAA	-15	NA	26087713	26082671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_26083014_26083176_26083327_26083567_26083696_26087387_26087518_26087598
ENSMUSG00000025732.7_26082672_26087713_2	chr17	-	806	5	NNC	ENSMUSG00000025732.7	novel	842	5	NA	NA	-2	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	124.161940625942	1429	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCGGGTGTTGGTGATTG	7787	False	NA	-4	True	AATAAA	-15	NA	26087713	26082671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_26083014_26083224_26083327_26083567_26083696_26087387_26087507_26087598
ENSMUSG00000025736.16_26049608_26051893_1	chr17	+	1180	7	NNC	ENSMUSG00000025736.16	novel	2268	9	NA	NA	795	1076	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	271	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCCGCCCGGTCGGCGAT	NA	False	NA	NA	False	NA	NA	NA	26049607	26051893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050884_26051019_26051219_26051665
ENSMUSG00000025736.16_26049608_26051893_2	chr17	+	1181	6	NNC	ENSMUSG00000025736.16	novel	622	4	NA	NA	795	1076	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCCGCCCGGTCGGCGAT	NA	False	NA	NA	False	NA	NA	NA	26049607	26051893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_26049985_26050075_26050193_26050511_26050606_26050769_26050936_26051019_26051219_26051665
ENSMUSG00000025736.16_26049608_26051893_3	chr17	+	1229	7	NNC	ENSMUSG00000025736.16	novel	2268	9	NA	NA	795	1076	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1030	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCCGCCCGGTCGGCGAT	NA	False	NA	NA	False	NA	NA	NA	26049607	26051893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050913_26050999_26051219_26051665
ENSMUSG00000025736.16_26049608_26051893_4	chr17	+	1238	7	NNC	ENSMUSG00000025736.16	novel	2268	9	NA	NA	795	1076	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCCGCCCGGTCGGCGAT	NA	False	NA	NA	False	NA	NA	NA	26049607	26051893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_26049985_26050075_26050193_26050282_26050340_26050511_26050606_26050769_26050936_26051019_26051219_26051665
ENSMUSG00000025736.16_26049608_26051893_5	chr17	+	1225	7	NNC	ENSMUSG00000025736.16	novel	2268	9	NA	NA	795	1076	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCCGCCCGGTCGGCGAT	NA	False	NA	NA	False	NA	NA	NA	26049607	26051893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050929_26051019_26051219_26051665
ENSMUSG00000025736.16_26049608_26051893_7	chr17	+	1500	5	NIC	ENSMUSG00000025736.16	novel	622	4	NA	NA	795	1076	intron_retention	FALSE	non_canonical	0	0	junction_1	0	631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCCGCCCGGTCGGCGAT	NA	False	NA	NA	False	NA	NA	NA	26049607	26051893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_26049985_26050075_26050606_26050769_26050936_26051019_26051219_26051665
ENSMUSG00000025736.16_26049608_26051893_8	chr17	+	1247	7	NNC	ENSMUSG00000025736.16	novel	2268	9	NA	NA	795	1076	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCCGCCCGGTCGGCGAT	NA	False	NA	NA	False	NA	NA	NA	26049607	26051893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050951_26051019_26051219_26051665
ENSMUSG00000025742.6_166131282_166165706_1	chrX	-	1696	7	FSM	ENSMUSG00000025742.6	ENSMUST00000026839.5	3699	7	39	1964	0	-1964	multi-exon	FALSE	canonical	3	187	junction_5	11.6535640709422	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTTTTAATTGCCACTT	NA	False	NA	NA	False	ATTAAA	-18	NA	166165706	166131281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156998_166157183_166165465
ENSMUSG00000025742.6_166131425_166165706_1	chrX	-	1562	7	NNC	ENSMUSG00000025742.6	novel	3699	7	NA	NA	0	-2107	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_5	70.4258869703148	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTGTTTTTTTCTTAA	NA	False	NA	-3	True	NA	NA	NA	166165706	166131424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156989_166157183_166165465
ENSMUSG00000025742.6_166131425_166165706_2	chrX	-	1553	7	FSM	ENSMUSG00000025742.6	ENSMUST00000026839.5	3699	7	39	2107	0	-2107	multi-exon	FALSE	canonical	3	187	junction_5	11.6535640709422	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTGTTTTTTTCTTAA	NA	False	NA	-3	True	NA	NA	NA	166165706	166131424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156998_166157183_166165465
ENSMUSG00000025742.6_166131655_166165706_1	chrX	-	1323	7	FSM	ENSMUSG00000025742.6	ENSMUST00000026839.5	3699	7	39	2337	0	-2337	multi-exon	FALSE	canonical	3	187	junction_5	11.6535640709422	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCTTTTCCCTCGTTCT	NA	False	NA	NA	False	NA	NA	NA	166165706	166131654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156998_166157183_166165465
ENSMUSG00000025742.6_166155405_166165706_1	chrX	-	608	3	NNC	ENSMUSG00000025742.6	novel	599	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	112.5	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTATGTCCTAAGAT	NA	False	NA	NA	False	AATAAA	-25	NA	166165706	166155404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_166155579_166156989_166157183_166165465
ENSMUSG00000025745.13_30324424_30359975_1	chr5	-	2710	20	FSM	ENSMUSG00000025745.13	ENSMUST00000156859.3	4017	20	185	1122	-1	0	multi-exon	FALSE	canonical	3	340	junction_11	40.0253382350609	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGGCCTGTTTTCTTCT	NA	False	NA	-3	True	AATAAA	-23	NA	30359975	30324423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
ENSMUSG00000025745.13_30324424_30360160_1	chr5	-	2895	20	FSM	ENSMUSG00000025745.13	ENSMUST00000156859.3	4017	20	0	1122	0	0	multi-exon	FALSE	canonical	3	340	junction_11	40.0253382350609	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGGCCTGTTTTCTTCT	NA	False	NA	-3	True	AATAAA	-23	NA	30360160	30324423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
ENSMUSG00000025747.13_30265816_30278633_1	chr5	-	1190	7	FSM	ENSMUSG00000025747.13	ENSMUST00000026846.11	3163	7	-18	1991	-18	246	multi-exon	FALSE	canonical	3	1628	junction_1	98.4757443344412	16056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCAATGGGCCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	30278633	30265815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
ENSMUSG00000025747.13_30266062_30273488_1	chr5	-	439	5	NNC	ENSMUSG00000025747.13	novel	2723	7	NA	NA	5032	0	at_least_one_novel_splicesite	FALSE	canonical	2	147	junction_1	759.617173318245	130	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTGAAGACTTTCAGATT	NA	False	NA	-89	True	NA	NA	NA	30273488	30266061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_30266126_30266965_30267038_30268233_30268410_30269082_30269185_30273463
ENSMUSG00000025747.13_30266062_30278579_1	chr5	-	890	7	FSM	ENSMUSG00000025747.13	ENSMUST00000026846.11	3163	7	36	2237	0	0	multi-exon	FALSE	canonical	3	1628	junction_1	98.4757443344412	1670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTGAAGACTTTCAGATT	NA	False	NA	-89	True	NA	NA	NA	30278579	30266061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
ENSMUSG00000025747.13_30266062_30278579_2	chr5	-	788	7	NIC	ENSMUSG00000025747.13	novel	3163	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	63	junction_5	669.869058514838	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTGAAGACTTTCAGATT	NA	False	NA	-89	True	NA	NA	NA	30278579	30266061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273537_30276631_30276706_30278358
ENSMUSG00000025747.13_30266062_30278633_1	chr5	-	944	7	FSM	ENSMUSG00000025747.13	ENSMUST00000026846.11	3163	7	-18	2237	-18	0	multi-exon	FALSE	canonical	3	1628	junction_1	98.4757443344412	6833	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTGAAGACTTTCAGATT	NA	False	NA	-89	True	NA	NA	NA	30278633	30266061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
ENSMUSG00000025758.11_40754477_40770904_1	chr3	+	3042	16	FSM	ENSMUSG00000025758.11	ENSMUST00000026858.11	3479	16	23	414	0	52	multi-exon	FALSE	canonical	3	256	junction_10	36.6472675955824	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGATTTTTTAAATTT	7808	False	NA	NA	False	AATAAA	-23	NA	40754476	40770904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_40754719_40755434_40755531_40756219_40756316_40756392_40756508_40759442_40760356_40760921_40761023_40763181_40763544_40764711_40764817_40765096_40765200_40765668_40765819_40766314_40766449_40766528_40766621_40767165_40767311_40767900_40768027_40769416_40769524_40770749
ENSMUSG00000025762.17_40918410_40932064_1	chr3	+	1361	7	ISM	ENSMUSG00000025762.17	ENSMUST00000191805.7	1705	10	13344	164	2343	0	3prime_fragment	FALSE	canonical	3	71	junction_1	8.71779788708135	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTGTTAGGTCCTTTGC	NA	False	NA	47	True	AATAAA	-32	NA	40918409	40932064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_40918578_40921799_40921941_40924325_40924470_40924885_40925052_40926795_40926941_40930935_40931111_40931642
ENSMUSG00000025762.17_40918410_40932232_1	chr3	+	1529	7	ISM	ENSMUSG00000025762.17	ENSMUST00000191805.7	1705	10	13344	-4	2343	4	3prime_fragment	FALSE	canonical	3	71	junction_1	8.71779788708135	163	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTTAAGGGCTTTTCT	NA	False	NA	17	True	AATAAA	-30	NA	40918409	40932232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_40918578_40921799_40921941_40924325_40924470_40924885_40925052_40926795_40926941_40930935_40931111_40931642
ENSMUSG00000025764.15_41510166_41568695_1	chr3	+	2877	11	FSM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	0	2604	0	202	multi-exon	FALSE	canonical	3	683	junction_7	54.3710400856927	376	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAACAAATGAAGTAACTTT	NA	False	NA	NA	False	TATAAA	-8	NA	41510165	41568695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
ENSMUSG00000025781.15_10060841_10084987_1	chr2	-	1160	10	NIC	ENSMUSG00000025781.15	novel	1735	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	102	junction_9	1403.57836340627	1263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9838	False	NA	-2	True	AATAAA	-19	NA	10084987	10060840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10084830
ENSMUSG00000025781.15_10060841_10085243_1	chr2	-	1053	9	NIC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	1506.61847671366	1218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9582	False	NA	-2	True	AATAAA	-19	NA	10085243	10060840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10085158
ENSMUSG00000025781.15_10060841_10085243_2	chr2	-	1070	9	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1479.97807732919	827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9582	False	NA	-2	True	AATAAA	-19	NA	10085243	10060840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068206_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
ENSMUSG00000025781.15_10060841_10085243_3	chr2	-	1076	9	NNC	ENSMUSG00000025781.15	novel	1735	10	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1506.61847671366	1587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9582	False	NA	-2	True	AATAAA	-19	NA	10085243	10060840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10085135
ENSMUSG00000025781.15_10060841_10085243_4	chr2	-	1081	10	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1443.13855498663	4812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9582	False	NA	-2	True	AATAAA	-19	NA	10085243	10060840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_10060961_10061575_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
ENSMUSG00000025781.15_10060841_10085243_5	chr2	-	1082	10	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1443.13855498663	5325	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9582	False	NA	-2	True	AATAAA	-19	NA	10085243	10060840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_10060967_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
ENSMUSG00000025781.15_10060841_10085243_6	chr2	-	1093	10	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1443.13855498663	9725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9582	False	NA	-2	True	AATAAA	-19	NA	10085243	10060840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_10060973_10061575_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
ENSMUSG00000025781.15_10060841_10085243_7	chr2	-	1049	9	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1529.55171128668	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9582	False	NA	-2	True	AATAAA	-19	NA	10085243	10060840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_10060967_10063802_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
ENSMUSG00000025781.15_10060841_10085243_8	chr2	-	1087	10	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-5	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	1442.8295331495	10173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9582	False	NA	-2	True	AATAAA	-19	NA	10085243	10060840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_10060967_10061575_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
ENSMUSG00000025781.15_10060841_10085243_9	chr2	-	1079	10	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1443.13855498663	1715	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9582	False	NA	-2	True	AATAAA	-19	NA	10085243	10060840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_10060964_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
ENSMUSG00000025782.13_9956547_10053417_1	chr2	-	1825	3	ISM	ENSMUSG00000025782.13	ENSMUST00000026888.11	4792	7	-10	37184	-10	-35658	5prime_fragment	FALSE	canonical	3	137	junction_1	7	127	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCGAGACAGAGAGAGGGAGA	NA	False	NA	NA	False	AAAAAG	-45	NA	10053417	9956546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_9957757_10047237_10047481_10053045
ENSMUSG00000025782.13_9957240_10053417_1	chr2	-	1132	3	ISM	ENSMUSG00000025782.13	ENSMUST00000026888.11	4792	7	-10	37877	-10	-36351	5prime_fragment	FALSE	canonical	3	137	junction_1	7	93	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTCACCTGGACGCTCCA	NA	False	NA	NA	False	AAGAAA	-2	NA	10053417	9957239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_9957757_10047237_10047481_10053045
ENSMUSG00000025792.10_120382714_120389256_1	chr11	+	1218	11	FSM	ENSMUSG00000025792.10	ENSMUST00000026899.4	2023	11	48	757	0	153	multi-exon	FALSE	canonical	3	77	junction_8	8.74356906531881	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTGGCCTGGCTGGTGTC	NA	False	NA	NA	False	NA	NA	NA	120382713	120389256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120382903_120385302_120385423_120385785_120385901_120385985_120386035_120386271_120386314_120387248_120387293_120387461_120387533_120387839_120387933_120388209_120388288_120388745_120388803_120388896
ENSMUSG00000025794.10_120400510_120403501_1	chr9	+	773	5	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	7059.62040410106	3177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400509	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402779_120403160
ENSMUSG00000025794.10_120400580_120403501_1	chr9	+	730	6	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6335.39666950697	58686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400579	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_120400608_120401161_120401264_120401833_120401939_120402641_120402742_120402829_120402884_120403160
ENSMUSG00000025794.10_120400580_120403501_10	chr9	+	711	6	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	119	junction_4	6503.26316244391	49260	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400579	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402838_120402884_120403160
ENSMUSG00000025794.10_120400580_120403501_11	chr9	+	625	5	NIC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	573	junction_2	5946.15987423816	2696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400579	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_120400608_120401161_120401264_120402641_120402742_120402829_120402884_120403160
ENSMUSG00000025794.10_120400580_120403501_12	chr9	+	704	6	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	416	junction_4	6394.96531343212	7587	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400579	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402845_120402884_120403160
ENSMUSG00000025794.10_120400580_120403501_13	chr9	+	710	6	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6335.39666950697	40619	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400579	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_120400608_120401161_120401264_120401833_120401929_120402651_120402742_120402829_120402884_120403160
ENSMUSG00000025794.10_120400580_120403501_14	chr9	+	707	6	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6335.39666950697	26832	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400579	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_120400608_120401161_120401264_120401833_120401929_120402654_120402742_120402829_120402884_120403160
ENSMUSG00000025794.10_120400580_120403501_2	chr9	+	719	6	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6106.90649674612	73793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400579	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_120400608_120401161_120401270_120401840_120401929_120402641_120402742_120402829_120402884_120403160
ENSMUSG00000025794.10_120400580_120403501_3	chr9	+	808	5	NIC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	10044	junction_1	2963.91573766867	5596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400579	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402884_120403160
ENSMUSG00000025794.10_120400580_120403501_4	chr9	+	708	6	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6335.39666950697	13883	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400579	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_120400608_120401161_120401264_120401833_120401917_120402641_120402742_120402829_120402884_120403160
ENSMUSG00000025794.10_120400580_120403501_5	chr9	+	720	6	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6335.39666950697	26392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400579	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_120400608_120401161_120401264_120401833_120401939_120402651_120402742_120402829_120402884_120403160
ENSMUSG00000025794.10_120400580_120403501_6	chr9	+	651	6	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6335.39666950697	980	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400579	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_120400608_120401161_120401264_120401833_120401929_120402710_120402742_120402829_120402884_120403160
ENSMUSG00000025794.10_120400580_120403501_7	chr9	+	702	6	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	6486.86231085569	10859	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400579	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403178
ENSMUSG00000025794.10_120400580_120403501_8	chr9	+	709	6	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	6546.75745694004	24366	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400579	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402731_120402829_120402884_120403160
ENSMUSG00000025794.10_120400580_120403501_9	chr9	+	686	5	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	7059.62040410106	1280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120400579	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402762_120403160
ENSMUSG00000025794.10_120401161_120403501_1	chr9	+	685	5	NNC	ENSMUSG00000025794.10	novel	1271	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	1433	junction_4	6568.84744456743	4466	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120401160	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403168
ENSMUSG00000025794.10_120401161_120403501_2	chr9	+	690	5	NNC	ENSMUSG00000025794.10	novel	598	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6787.17667738214	10730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120401160	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_120401268_120401840_120401929_120402641_120402742_120402829_120402884_120403160
ENSMUSG00000025816.16_5875840_5900191_1	chr2	-	2200	11	NIC	ENSMUSG00000025816.16	novel	2448	12	NA	NA	-46	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_5	87.372821861263	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAACTGTTGCAGTTGT	NA	False	NA	-59	True	AATAAA	-9	NA	5900191	5875839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_5876833_5878553_5878631_5879037_5879230_5881174_5881373_5881651_5881813_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
ENSMUSG00000025816.16_5887589_5900191_1	chr2	-	509	5	ISM	ENSMUSG00000025816.16	ENSMUST00000026926.5	756	8	-61	4923	-46	-970	5prime_fragment	FALSE	canonical	3	272	junction_1	20.6397674405503	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTTTGTGGTAAAGATG	NA	False	NA	NA	False	ATTAAA	-20	NA	5900191	5887588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
ENSMUSG00000025817.13_5849845_5873551_1	chr2	+	1596	9	NNC	ENSMUSG00000025817.13	novel	1590	10	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	239.550490502524	3390	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGACTTGGGGGTTTTTTT	1717	False	NA	NA	False	NA	NA	NA	5849844	5873551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
ENSMUSG00000025817.13_5850064_5873121_1	chr2	+	947	9	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	0	-426	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	239.550490502524	206	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACAGATGCATGTGGTATG	1936	False	NA	NA	False	CATAAA	-22	NA	5850063	5873121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
ENSMUSG00000025817.13_5850064_5873551_1	chr2	+	1460	10	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	330.348002066209	616	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGACTTGGGGGTTTTTTT	1936	False	NA	NA	False	NA	NA	NA	5850063	5873551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_5850197_5852918_5853002_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
ENSMUSG00000025817.13_5850064_5873551_2	chr2	+	1377	9	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	239.550490502524	2752	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGACTTGGGGGTTTTTTT	1936	False	NA	NA	False	NA	NA	NA	5850063	5873551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
ENSMUSG00000025817.13_5850101_5873121_1	chr2	+	980	10	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	0	-426	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	320.9755192388	70	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACAGATGCATGTGGTATG	1973	False	NA	NA	False	CATAAA	-22	NA	5850100	5873121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_5850197_5852931_5853002_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
ENSMUSG00000025817.13_5850101_5873551_1	chr2	+	1410	10	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	320.9755192388	534	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGACTTGGGGGTTTTTTT	1973	False	NA	NA	False	NA	NA	NA	5850100	5873551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_5850197_5852931_5853002_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
ENSMUSG00000025839.4_87319431_87327256_1	chr2	-	1702	4	NIC	ENSMUSG00000025839.4	novel	1861	3	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_3	11.1455023315337	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTATTTATTTATTTAT	NA	False	NA	-7	True	AATAAA	-16	NA	87327256	87319430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_87320426_87321167_87321750_87322478_87322538_87327190
ENSMUSG00000025839.4_87319431_87327256_2	chr2	-	1953	4	NIC	ENSMUSG00000025839.4	novel	1861	3	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	7.40870359029762	121	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTATTTATTTATTTAT	NA	False	NA	-7	True	AATAAA	-16	NA	87327256	87319430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_87320426_87321167_87321750_87322478_87322789_87327190
ENSMUSG00000025858.13_139252686_139255806_1	chr5	+	1434	4	ISM	ENSMUSG00000025858.13	ENSMUST00000110878.2	1180	9	13420	-722	0	0	3prime_fragment	FALSE	canonical	3	1098	junction_3	53.2812245438193	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCAGTAGTCCTTTCTG	286	False	NA	NA	False	AATAAA	-15	NA	139252685	139255806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_139252900_139252981_139253058_139253157_139253231_139254735
ENSMUSG00000025869.12_54732558_54737871_1	chr13	-	1164	5	FSM	ENSMUSG00000025869.12	ENSMUST00000026987.12	1756	5	32	560	0	-209	multi-exon	FALSE	canonical	3	1006	junction_4	30.4302481094059	4792	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTTGTGTTTACTGTGC	NA	False	NA	-2	True	ATTAAA	-16	NA	54737871	54732557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_54733238_54733632_54733740_54736410_54736481_54737475_54737585_54737673
ENSMUSG00000025869.12_54732647_54737885_1	chr13	-	1089	5	FSM	ENSMUSG00000025869.12	ENSMUST00000026987.12	1756	5	18	649	-14	-298	multi-exon	FALSE	canonical	3	1006	junction_4	30.4302481094059	4753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGACTAGGTGGGTTTTTG	NA	False	NA	-24	True	GATAAA	-21	NA	54737885	54732646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_54733238_54733632_54733740_54736410_54736481_54737475_54737585_54737673
ENSMUSG00000025870.11_54722860_54730576_1	chr13	+	2649	4	FSM	ENSMUSG00000025870.11	ENSMUST00000026988.11	1046	4	32	-1635	0	1635	multi-exon	FALSE	canonical	3	59	junction_3	14.6363322667334	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTGAAGTGACTTTACT	2706	False	NA	8	True	AATAAA	-14	NA	54722859	54730576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_54723091_54723562_54723762_54726605_54726782_54728533
ENSMUSG00000025871.19_54699031_54713169_1	chr13	-	2619	10	NNC	ENSMUSG00000025871.19	novel	2727	9	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	170.539521504728	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTCTTGTCCATTCTG	NA	False	NA	NA	False	AATAAA	-26	NA	54713169	54699030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_54699900_54699928_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54711997_54712086_54712327_54712435_54712994
ENSMUSG00000025872.6_54607630_54616639_1	chr13	-	1327	6	NNC	ENSMUSG00000025872.6	novel	2335	6	NA	NA	0	-980	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	220.866837709965	2799	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAACGGCCCAAAAATCT	NA	False	NA	NA	False	CATAAA	-42	NA	54616639	54607629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_54608051_54611284_54611386_54611494_54611657_54613992_54614193_54615638_54615796_54616353
ENSMUSG00000025872.6_54607630_54616639_2	chr13	-	1403	6	NIC	ENSMUSG00000025872.6	novel	2335	6	NA	NA	0	-980	combination_of_known_junctions	FALSE	canonical	3	14	junction_4	215.338802820114	1940	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAACGGCCCAAAAATCT	NA	False	NA	NA	False	CATAAA	-42	NA	54616639	54607629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_54608051_54611284_54611386_54611494_54611657_54613992_54614269_54615638_54615796_54616353
ENSMUSG00000025872.6_54607630_54616639_3	chr13	-	1324	6	NNC	ENSMUSG00000025872.6	novel	2335	6	NA	NA	0	-980	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	222.254448774372	2051	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAACGGCCCAAAAATCT	NA	False	NA	NA	False	CATAAA	-42	NA	54616639	54607629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_54608051_54611284_54611386_54611494_54611649_54613992_54614198_54615638_54615796_54616353
ENSMUSG00000025872.6_54607630_54616639_4	chr13	-	1319	6	NNC	ENSMUSG00000025872.6	novel	2335	6	NA	NA	0	-980	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	220.866837709965	2068	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAACGGCCCAAAAATCT	NA	False	NA	NA	False	CATAAA	-42	NA	54616639	54607629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_54608051_54611284_54611386_54611494_54611657_54613992_54614198_54615651_54615796_54616353
ENSMUSG00000025872.6_54607630_54616639_5	chr13	-	1327	6	NNC	ENSMUSG00000025872.6	novel	2335	6	NA	NA	0	-980	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	220.628737928675	2440	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAACGGCCCAAAAATCT	NA	False	NA	NA	False	CATAAA	-42	NA	54616639	54607629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_54608051_54611284_54611381_54611494_54611657_54613992_54614198_54615638_54615796_54616353
ENSMUSG00000025873.17_54769637_54809406_1	chr13	+	1673	10	NIC	ENSMUSG00000025873.17	novel	4322	11	NA	NA	0	7	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	175.481418945317	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCTGACTTAGGTGTAT	NA	False	NA	8	True	NA	NA	NA	54769636	54809406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
ENSMUSG00000025873.17_54769637_54809510_1	chr13	+	1859	11	FSM	ENSMUSG00000025873.17	ENSMUST00000026991.16	1748	11	0	-111	0	111	multi-exon	FALSE	canonical	3	159	junction_3	87.926617130423	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCGCATCCTTTGCCACT	NA	False	NA	23	True	AATAAA	-16	NA	54769636	54809510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_54769717_54786062_54786132_54789231_54789310_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
ENSMUSG00000025875.15_54937276_54944589_1	chr13	+	1003	8	NIC	ENSMUSG00000025875.15	novel	1585	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_6	152.8088041058	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGGTTTATGTTCACCGT	NA	False	NA	18	True	AATAAA	-19	NA	54937275	54944589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943969_54944032_54944410
ENSMUSG00000025875.15_54937276_54944589_2	chr13	+	1120	9	NIC	ENSMUSG00000025875.15	novel	1048	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_8	99.0959131347	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGGTTTATGTTCACCGT	NA	False	NA	18	True	AATAAA	-19	NA	54937275	54944589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969_54944032_54944410
ENSMUSG00000025875.15_54937276_54944589_3	chr13	+	922	7	NIC	ENSMUSG00000025875.15	novel	1585	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	168.488047713249	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGGTTTATGTTCACCGT	NA	False	NA	18	True	AATAAA	-19	NA	54937275	54944589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_54937495_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969_54944032_54944410
ENSMUSG00000025875.15_54937408_54944589_1	chr13	+	988	9	NIC	ENSMUSG00000025875.15	novel	1048	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_8	99.0959131347	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGGTTTATGTTCACCGT	NA	False	NA	18	True	AATAAA	-19	NA	54937407	54944589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969_54944032_54944410
ENSMUSG00000025878.17_55176108_55248067_1	chr13	-	2475	15	FSM	ENSMUSG00000025878.17	ENSMUST00000127195.8	2936	15	46	415	0	0	multi-exon	FALSE	non_canonical	0	0	junction_10	39.2030949423795	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATCTTATTTCAATAG	NA	False	NA	NA	False	AATATA	-12	NA	55248067	55176107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223804_55224110_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
ENSMUSG00000025893.9_4309732_4330073_1	chr9	+	673	3	FSM	ENSMUSG00000025893.9	ENSMUST00000049648.9	2231	3	-101	1659	-101	-1638	multi-exon	TRUE	canonical	3	30	junction_1	14.5	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTGCATTTGTTATCTC	-2	True	NA	NA	False	AATAAA	-19	NA	4309731	4330073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_4309935_4316826_4317072_4329848
ENSMUSG00000025893.9_4309732_4330073_2	chr9	+	778	4	FSM	ENSMUSG00000025893.9	ENSMUST00000212221.2	2313	4	-103	1638	-101	-1638	multi-exon	FALSE	canonical	3	18	junction_1	18.4571575998762	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTGCATTTGTTATCTC	-2	True	NA	NA	False	AATAAA	-19	NA	4309731	4330073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_4309935_4313701_4313807_4316826_4317072_4329848
ENSMUSG00000025893.9_4309835_4330073_1	chr9	+	570	3	FSM	ENSMUSG00000025893.9	ENSMUST00000049648.9	2231	3	2	1659	0	-1638	multi-exon	FALSE	canonical	3	30	junction_1	14.5	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTGCATTTGTTATCTC	0	True	NA	NA	False	AATAAA	-19	NA	4309834	4330073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_4309935_4316826_4317072_4329848
ENSMUSG00000025893.9_4309835_4330073_2	chr9	+	675	4	FSM	ENSMUSG00000025893.9	ENSMUST00000212221.2	2313	4	0	1638	0	-1638	multi-exon	FALSE	canonical	3	18	junction_1	18.4571575998762	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTGCATTTGTTATCTC	0	True	NA	NA	False	AATAAA	-19	NA	4309834	4330073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_4309935_4313701_4313807_4316826_4317072_4329848
ENSMUSG00000025894.12_4294793_4309469_1	chr9	-	1069	7	NNC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	297.844898115333	4413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTAGGGCTTGACATGT	-1	True	NA	NA	False	AATAAA	-45	NA	4309469	4294792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_4294841_4296616_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309253
ENSMUSG00000025894.12_4295957_4309469_1	chr9	-	1519	5	NNC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	0	-992	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_3	348.214732600446	1053	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTCGTCTTAGGGTTTC	-1	True	NA	43	True	AGTAAA	-22	NA	4309469	4295956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_4296840_4299297_4299370_4302469_4302632_4308733_4308920_4309253
ENSMUSG00000025894.12_4296037_4309469_1	chr9	-	1253	4	NIC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	0	-1072	combination_of_known_splicesites	FALSE	canonical	3	71	junction_3	376.029549666276	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCCATCGACTCAGATGA	-1	True	NA	-37	True	CATAAA	-42	NA	4309469	4296036	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_4296840_4299297_4299370_4302469_4302632_4309253
ENSMUSG00000025894.12_4296037_4309469_2	chr9	-	1601	6	FSM	ENSMUSG00000025894.12	ENSMUST00000051589.9	2843	6	-2	1244	0	-1072	multi-exon	FALSE	canonical	3	643	junction_4	99.1576522513517	5786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCCATCGACTCAGATGA	-1	True	NA	-37	True	CATAAA	-42	NA	4309469	4296036	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309253
ENSMUSG00000025894.12_4296613_4309469_1	chr9	-	953	6	NNC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	0	-1648	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	316.754415912391	159	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTGATGTGATCAAATT	-1	True	NA	NA	False	AATAAA	-36	NA	4309469	4296612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308848_4309253
ENSMUSG00000025894.12_4296613_4309469_2	chr9	-	1237	4	ISM	ENSMUSG00000025894.12	ENSMUST00000212897.2	2519	5	2	1648	0	-1648	intron_retention	FALSE	canonical	3	33	junction_3	393.928363481935	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTGATGTGATCAAATT	-1	True	NA	NA	False	AATAAA	-36	NA	4309469	4296612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_4296840_4299297_4299370_4302469_4302632_4308693
ENSMUSG00000025894.12_4296613_4309469_3	chr9	-	761	5	NNC	ENSMUSG00000025894.12	novel	2810	6	NA	NA	0	-1648	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	356.11128878484	128	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTGATGTGATCAAATT	-1	True	NA	NA	False	AATAAA	-36	NA	4309469	4296612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4309291
ENSMUSG00000025894.12_4296613_4309469_4	chr9	-	863	5	NNC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	0	-1648	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_3	348.214732600446	488	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTGATGTGATCAAATT	-1	True	NA	NA	False	AATAAA	-36	NA	4309469	4296612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_4296840_4299297_4299370_4302469_4302632_4308733_4308920_4309253
ENSMUSG00000025894.12_4296613_4309469_5	chr9	-	677	4	NIC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	0	-1648	combination_of_known_splicesites	FALSE	canonical	3	71	junction_3	376.029549666276	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTGATGTGATCAAATT	-1	True	NA	NA	False	AATAAA	-36	NA	4309469	4296612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_4296840_4299297_4299370_4302469_4302632_4309253
ENSMUSG00000025894.12_4296613_4309469_6	chr9	-	1015	6	NNC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	0	-1648	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	326.132856363783	3027	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTGATGTGATCAAATT	-1	True	NA	NA	False	AATAAA	-36	NA	4309469	4296612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_4296840_4299297_4299370_4302469_4302622_4303093_4303216_4308693_4308920_4309253
ENSMUSG00000025898.7_3404088_3410281_1	chr9	+	419	2	ISM	ENSMUSG00000025898.7	ENSMUST00000212644.2	2085	3	0	2918	0	-2918	5prime_fragment	FALSE	canonical	3	318	junction_1	0	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAACCAAAATA	9	True	NA	NA	False	NA	NA	NA	3404087	3410281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_3404191_3409965
ENSMUSG00000025898.7_3404088_3494192_1	chr9	+	551	4	NNC	ENSMUSG00000025898.7	novel	2283	8	NA	NA	0	14956	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	141.238175512934	1018	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTTGTCTTAGCTCCGT	9	True	NA	NA	False	NA	NA	NA	3404087	3494192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_3404191_3409965_3410077_3411328_3411452_3493978
ENSMUSG00000025903.15_4878115_4908079_1	chr1	+	637	7	NNC	ENSMUSG00000025903.15	novel	877	8	NA	NA	-4	-3113	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_6	305.803313694712	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATATATAGTAATATGGTT	NA	False	NA	NA	False	AATAAA	-17	NA	4878114	4908079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4907824
ENSMUSG00000025903.15_4878115_4908331_1	chr1	+	889	7	NNC	ENSMUSG00000025903.15	novel	877	8	NA	NA	-4	-2861	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_6	305.803313694712	59	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTATGGTCTTTGTCTAG	NA	False	NA	NA	False	AATAAA	-16	NA	4878114	4908331	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4907824
ENSMUSG00000025903.15_4878115_4916962_1	chr1	+	2431	8	NNC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	279.122604909435	2386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTTATATAGTACTGTT	NA	False	NA	21	True	AATAAA	-22	NA	4878114	4916962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_4878206_4898781_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
ENSMUSG00000025903.15_4878115_4916962_2	chr1	+	2336	8	FSM	ENSMUSG00000025903.15	ENSMUST00000115529.8	930	8	-19	-1387	-4	0	multi-exon	FALSE	canonical	3	36	junction_6	273.277312991617	2311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTTATATAGTACTGTT	NA	False	NA	21	True	AATAAA	-22	NA	4878114	4916962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4911178_4911356_4915185
ENSMUSG00000025911.15_9618280_9646963_1	chr1	+	1859	13	FSM	ENSMUSG00000025911.15	ENSMUST00000027044.15	2022	13	0	163	0	-163	multi-exon	FALSE	canonical	0	0	junction_3	21.4416197045735	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCTGTTTCATAAAAGC	NA	False	NA	NA	False	AATAAA	-23	NA	9618279	9646963	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_9618377_9620131_9620170_9623147_9623202_9623542_9623698_9623847_9624045_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
ENSMUSG00000025917.10_10094826_10108170_1	chr1	-	1516	8	FSM	ENSMUSG00000025917.10	ENSMUST00000027050.10	1698	8	182	0	0	0	multi-exon	FALSE	canonical	3	713	junction_7	104.105715501119	7552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCTGACTGGCCTGAGT	NA	False	NA	-1	True	AGTAAA	-40	NA	10108170	10094825	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107894
ENSMUSG00000025917.10_10095068_10107973_1	chr1	-	1077	8	FSM	ENSMUSG00000025917.10	ENSMUST00000027050.10	1698	8	379	242	190	0	multi-exon	FALSE	canonical	3	713	junction_7	104.105715501119	1272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCACGTGAAATTGTCCT	NA	False	NA	-25	True	AATAAA	-2	NA	10107973	10095067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107894
ENSMUSG00000025917.10_10095068_10108170_1	chr1	-	1271	8	NNC	ENSMUSG00000025917.10	novel	1698	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	347.314478446804	6763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCACGTGAAATTGTCCT	NA	False	NA	-25	True	AATAAA	-2	NA	10108170	10095067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_10095289_10097327_10097470_10100819_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107894
ENSMUSG00000025917.10_10095068_10108170_2	chr1	-	1025	8	NIC	ENSMUSG00000025917.10	novel	1698	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_7	318.204272730071	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCACGTGAAATTGTCCT	NA	False	NA	-25	True	AATAAA	-2	NA	10108170	10095067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10108143
ENSMUSG00000025917.10_10095068_10108393_1	chr1	-	1248	8	NIC	ENSMUSG00000025917.10	novel	1698	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_7	318.204272730071	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCACGTGAAATTGTCCT	NA	False	NA	-25	True	AATAAA	-2	NA	10108393	10095067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10108143
ENSMUSG00000025925.15_15875870_15913367_1	chr1	+	1359	10	FSM	ENSMUSG00000025925.15	ENSMUST00000188371.7	2268	10	0	909	0	-327	multi-exon	FALSE	canonical	3	905	junction_7	69.1671798285292	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTGTTTACAATTTCCT	NA	False	NA	4	True	GATAAA	-15	NA	15875869	15913367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
ENSMUSG00000025925.15_15875870_15913694_1	chr1	+	1686	10	FSM	ENSMUSG00000025925.15	ENSMUST00000188371.7	2268	10	0	582	0	0	multi-exon	FALSE	canonical	3	905	junction_7	69.1671798285292	4675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCCACCTAGCATTGA	NA	False	NA	51	True	TATAAA	-11	NA	15875869	15913694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
ENSMUSG00000025930.7_14823570_14825603_1	chr1	-	1167	3	FSM	ENSMUSG00000025930.7	ENSMUST00000190719.2	741	3	-26	-400	-26	0	multi-exon	FALSE	canonical	1	2	junction_2	0.5	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCATTGTAAAAGTTCTT	NA	False	NA	4	True	AATAAA	-21	NA	14825603	14823569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_14824550_14824729_14824767_14825453
ENSMUSG00000025930.7_14823570_14825603_2	chr1	-	1130	2	FSM	ENSMUSG00000025930.7	ENSMUST00000027062.7	1741	2	611	0	-26	0	multi-exon	FALSE	canonical	3	23	junction_1	0	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCATTGTAAAAGTTCTT	NA	False	NA	4	True	AATAAA	-21	NA	14825603	14823569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_14824550_14825453
ENSMUSG00000025934.16_21318479_21335435_1	chr1	+	1061	7	NNC	ENSMUSG00000025934.16	novel	1457	7	NA	NA	-5266	190	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_2	30.7064958744707	289	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCTGGAGTATTCGAACA	NA	False	NA	12	True	AATAAA	-18	NA	21318478	21335435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_21318604_21319974_21320083_21327554_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
ENSMUSG00000025934.16_21320750_21326436_1	chr1	+	677	3	Genic_Genomic	ENSMUSG00000025934.16	novel	2792	1	NA	NA	-2995	-100	multi-exon	FALSE	non_canonical	0	0	junction_1	0	268	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGTCCTCAATTACCATG	NA	False	NA	NA	False	AAAAAG	-13	NA	21320749	21326436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_21321037_21324392_21324563_21326216
ENSMUSG00000025934.16_21323509_21326295_1	chr1	+	444	3	Genic_Genomic	ENSMUSG00000025934.16	novel	2792	1	NA	NA	-236	-241	multi-exon	FALSE	non_canonical	0	0	junction_1	0	715	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAGGCACATCCCAGCGT	NA	False	NA	NA	False	NA	NA	NA	21323508	21326295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_21323669_21324392_21324598_21326216
ENSMUSG00000025934.16_21323509_21326381_1	chr1	+	495	3	Genic_Genomic	ENSMUSG00000025934.16	novel	2792	1	NA	NA	-236	-155	multi-exon	FALSE	non_canonical	0	0	junction_1	0	607	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTACCTAGTCAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	21323508	21326381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_21323669_21324392_21324563_21326216
ENSMUSG00000025934.16_21323509_21326436_1	chr1	+	585	3	Genic_Genomic	ENSMUSG00000025934.16	novel	2792	1	NA	NA	-236	-100	multi-exon	FALSE	non_canonical	0	0	junction_1	0	862	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGTCCTCAATTACCATG	NA	False	NA	NA	False	AAAAAG	-13	NA	21323508	21326436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_21323669_21324392_21324598_21326216
ENSMUSG00000025934.16_21323509_21326436_2	chr1	+	378	3	Genic_Genomic	ENSMUSG00000025934.16	novel	2792	1	NA	NA	-236	-100	multi-exon	FALSE	non_canonical	0	0	junction_1	0	493	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGTCCTCAATTACCATG	NA	False	NA	NA	False	AAAAAG	-13	NA	21323508	21326436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_21323669_21324392_21324563_21326388
ENSMUSG00000025934.16_21327086_21335437_1	chr1	+	1014	6	NNC	ENSMUSG00000025934.16	novel	1457	7	NA	NA	3341	192	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	18.4867520132661	405	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGAGTATTCGAACATT	NA	False	NA	14	True	AATAAA	-20	NA	21327085	21335437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_21327270_21327554_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
ENSMUSG00000025937.7_13695069_13730770_1	chr1	-	1465	7	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	0	-1515	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	892.793633614299	267	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTCTCATCTTTAACCA	NA	False	NA	NA	False	NA	NA	NA	13730770	13695068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_13695611_13697575_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
ENSMUSG00000025937.7_13696117_13730770_2	chr1	-	1797	7	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	0	-2563	at_least_one_novel_splicesite	FALSE	canonical	3	146	junction_6	847.959003857039	1247	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATGTGTATGAATATTT	NA	False	NA	35	True	TTTAAA	-40	NA	13730770	13696116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730686
ENSMUSG00000025937.7_13696117_13730770_3	chr1	-	1923	7	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	0	-2563	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	878.890714986163	6294	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATGTGTATGAATATTT	NA	False	NA	35	True	TTTAAA	-40	NA	13730770	13696116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_13697129_13697579_13697662_13700288_13700426_13708450_13708634_13717608_13717736_13720944_13721109_13730552
ENSMUSG00000025937.7_13696976_13730770_1	chr1	-	938	7	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	0	3243	at_least_one_novel_splicesite	FALSE	canonical	3	146	junction_6	847.959003857039	342	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGATACTTGTAATCCG	NA	False	NA	-5	True	ATTAAA	-20	NA	13730770	13696975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730686
ENSMUSG00000025937.7_13696976_13730770_2	chr1	-	1523	6	NIC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	0	3243	intron_retention	FALSE	canonical	3	2151	junction_4	166.606842596575	259	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGATACTTGTAATCCG	NA	False	NA	-5	True	ATTAAA	-20	NA	13730770	13696975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
ENSMUSG00000025937.7_13696976_13730770_4	chr1	-	1069	7	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	0	3243	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	878.890714986163	5427	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGATACTTGTAATCCG	NA	False	NA	-5	True	ATTAAA	-20	NA	13730770	13696975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_13697129_13697579_13697662_13700288_13700426_13708445_13708634_13717608_13717736_13720944_13721109_13730552
ENSMUSG00000025937.7_13696976_13730770_5	chr1	-	1064	7	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	0	3243	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	878.890714986163	5139	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGATACTTGTAATCCG	NA	False	NA	-5	True	ATTAAA	-20	NA	13730770	13696975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_13697129_13697579_13697662_13700288_13700426_13708450_13708634_13717608_13717736_13720944_13721109_13730552
ENSMUSG00000025937.7_13696976_13730770_6	chr1	-	928	7	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	0	3243	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_5	883.707609387228	228	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGATACTTGTAATCCG	NA	False	NA	-5	True	ATTAAA	-20	NA	13730770	13696975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13721088_13721109_13730552
ENSMUSG00000025937.7_13697175_13730770_1	chr1	-	1324	6	ISM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	0	3621	0	3044	5prime_fragment	FALSE	canonical	3	2151	junction_4	166.606842596575	208	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGTACTTATCTCTTGT	NA	False	NA	-135	True	TATAAA	-16	NA	13730770	13697174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
ENSMUSG00000025937.7_13697175_13730770_2	chr1	-	1038	7	NNC	ENSMUSG00000025937.7	novel	400	2	NA	NA	0	3044	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	894.629842759314	189	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGTACTTATCTCTTGT	NA	False	NA	-135	True	TATAAA	-16	NA	13730770	13697174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_13697290_13697575_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
ENSMUSG00000025937.7_13717117_13730770_1	chr1	-	1001	3	ISM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	0	23563	0	-16898	5prime_fragment	FALSE	canonical	3	2151	junction_1	126	86	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGTAAATACTCTAGGGGT	NA	False	NA	NA	False	NA	NA	NA	13730770	13717116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_13717736_13720944_13721109_13730552
ENSMUSG00000025939.20_16611014_16689492_1	chr1	-	1543	7	NIC	ENSMUSG00000025939.20	novel	1508	7	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	195.295289241702	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGGAGTCTGTTCTTAAA	NA	False	NA	NA	False	AATAAA	-17	NA	16689492	16611013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_16612014_16614172_16614257_16652150_16652227_16655499_16655656_16668174_16668278_16672485_16672578_16689460
ENSMUSG00000025939.20_16634562_16689492_1	chr1	-	650	6	NNC	ENSMUSG00000025939.20	novel	493	6	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	169.945402997551	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGTGTAATTTAATGGTG	NA	False	NA	NA	False	AATAAA	-18	NA	16689492	16634561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_16634753_16652150_16652227_16655499_16655656_16668174_16668278_16672485_16672578_16689460
ENSMUSG00000025939.20_16640357_16689492_1	chr1	-	1609	6	FSM	ENSMUSG00000025939.20	ENSMUST00000117146.9	2181	6	221	351	-9	-351	multi-exon	FALSE	canonical	3	378	junction_5	28.7888867447145	856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGGACATTTTTATTT	NA	False	NA	NA	False	AATACA	-32	NA	16689492	16640356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_16641507_16652150_16652227_16655499_16655656_16668174_16668278_16672485_16672578_16689460
ENSMUSG00000025939.20_16640357_16689492_2	chr1	-	1530	6	NIC	ENSMUSG00000025939.20	novel	2181	6	NA	NA	-9	-351	combination_of_known_junctions	FALSE	canonical	3	127	junction_3	123.769139933992	749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGGACATTTTTATTT	NA	False	NA	NA	False	AATACA	-32	NA	16689492	16640356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_16641507_16652150_16652227_16655499_16655577_16668174_16668278_16672485_16672578_16689460
ENSMUSG00000025939.20_16640781_16689492_1	chr1	-	1106	6	NIC	ENSMUSG00000025939.20	novel	2181	6	NA	NA	-9	-775	combination_of_known_junctions	FALSE	canonical	3	127	junction_3	123.769139933992	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTCAGTCTCTGAAGTGA	NA	False	NA	NA	False	AATAAA	-18	NA	16689492	16640780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_16641507_16652150_16652227_16655499_16655577_16668174_16668278_16672485_16672578_16689460
ENSMUSG00000025939.20_16640781_16689492_2	chr1	-	1185	6	FSM	ENSMUSG00000025939.20	ENSMUST00000117146.9	2181	6	221	775	-9	-775	multi-exon	FALSE	canonical	3	378	junction_5	28.7888867447145	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTCAGTCTCTGAAGTGA	NA	False	NA	NA	False	AATAAA	-18	NA	16689492	16640780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_16641507_16652150_16652227_16655499_16655656_16668174_16668278_16672485_16672578_16689460
ENSMUSG00000025940.7_16735460_16748041_1	chr1	+	1226	3	FSM	ENSMUSG00000025940.7	ENSMUST00000065373.6	1710	3	26	458	0	-378	multi-exon	FALSE	canonical	3	512	junction_1	10.5	888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTAAAATGTGGATGGTC	NA	False	NA	6	True	AATAAA	-17	NA	16735459	16748041	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_16735730_16737891_16737998_16747191
ENSMUSG00000025949.17_65225842_65248584_1	chr1	+	1659	8	NIC	ENSMUSG00000025949.17	novel	1790	10	NA	NA	0	26	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	38.0740417221658	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCAGTGTTCTTAGTTAT	NA	False	NA	NA	False	GATAAA	-9	NA	65225841	65248584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_65225938_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65247941
ENSMUSG00000025956.11_64646246_64656361_1	chr1	-	1376	4	FSM	ENSMUSG00000025956.11	ENSMUST00000114079.9	2030	4	40	614	-18	-607	multi-exon	FALSE	canonical	3	40	junction_3	6.34209919681348	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAACTTGTAGGTTAGAA	NA	False	NA	1	True	AATAAA	-25	NA	64656361	64646245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_64647297_64654256_64654369_64655431_64655604_64656320
ENSMUSG00000025956.11_64646530_64656361_1	chr1	-	1092	4	FSM	ENSMUSG00000025956.11	ENSMUST00000114079.9	2030	4	40	898	-18	585	multi-exon	FALSE	canonical	3	40	junction_3	6.34209919681348	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTACTGTTGGAGTCT	NA	False	NA	NA	False	NA	NA	NA	64656361	64646529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_64647297_64654256_64654369_64655431_64655604_64656320
ENSMUSG00000025959.14_64074820_64161441_1	chr1	-	937	4	NIC	ENSMUSG00000025959.14	novel	7662	4	NA	NA	0	-6214	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	4.24264068711928	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACAAGAACAAAACACCGC	NA	False	NA	NA	False	NA	NA	NA	64161441	64074819	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_64074924_64081472_64081597_64117865_64118494_64161360
ENSMUSG00000025962.16_63769800_63777446_1	chr1	+	1719	6	ISM	ENSMUSG00000025962.16	ENSMUST00000027103.7	4486	12	27	16368	0	440	5prime_fragment	FALSE	canonical	3	308	junction_4	44.0545116872268	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACCTTGTCTGTTGTTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	63769799	63777446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_63769851_63770558_63771381_63773890_63773995_63774621_63774731_63775003_63775128_63776937
ENSMUSG00000025962.16_63769800_63791625_1	chr1	+	2270	12	FSM	ENSMUSG00000025962.16	ENSMUST00000027103.7	4486	12	27	2189	0	1	multi-exon	FALSE	canonical	3	308	junction_4	54.5943720043143	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGTGGATCAGCTGGCTGA	NA	False	NA	6	True	AATAAA	-17	NA	63769799	63791625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_63769851_63770558_63771381_63773890_63773995_63774621_63774731_63775003_63775128_63776937_63777078_63778340_63778514_63785000_63785165_63787116_63787330_63788844_63788930_63790422_63790538_63791455
ENSMUSG00000025967.17_63215984_63218815_1	chr1	+	1109	6	FSM	ENSMUSG00000025967.17	ENSMUST00000129339.8	1939	6	0	830	0	0	multi-exon	FALSE	canonical	3	2982	junction_1	199.182730175083	50623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	30	True	AATAAA	-15	NA	63215983	63218815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
ENSMUSG00000025967.17_63216289_63218815_1	chr1	+	804	6	FSM	ENSMUSG00000025967.17	ENSMUST00000129339.8	1939	6	305	830	0	0	multi-exon	FALSE	canonical	3	2982	junction_1	199.182730175083	49649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	30	True	AATAAA	-15	NA	63216288	63218815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
ENSMUSG00000025967.17_63216289_63218815_2	chr1	+	799	6	NNC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1246.22155333632	45985	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	30	True	AATAAA	-15	NA	63216288	63218815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_63216451_63216912_63217036_63217597_63217725_63217995_63218058_63218406_63218533_63218616
ENSMUSG00000025968.17_63182755_63189167_1	chr1	-	763	5	ISM	ENSMUSG00000025968.17	ENSMUST00000027111.15	2661	19	26814	0	-2285	0	3prime_fragment	FALSE	canonical	3	868	junction_4	37.7690349360425	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-31	NA	63189167	63182754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115
ENSMUSG00000025968.17_63182755_63215849_1	chr1	-	2529	19	FSM	ENSMUSG00000025968.17	ENSMUST00000027111.15	2661	19	132	0	0	0	multi-exon	FALSE	canonical	3	367	junction_18	130.918608680223	546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-31	NA	63215849	63182754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215744
ENSMUSG00000025968.17_63182755_63215849_2	chr1	-	2633	20	NIC	ENSMUSG00000025968.17	novel	2661	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	163	junction_19	199.298478811329	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-31	NA	63215849	63182754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215744
ENSMUSG00000025968.17_63182755_63215849_3	chr1	-	2791	20	NIC	ENSMUSG00000025968.17	novel	2590	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	123	junction_19	206.17340683078	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-31	NA	63215849	63182754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215586
ENSMUSG00000025971.7_57427399_57445630_1	chr1	+	1195	8	NIC	ENSMUSG00000025971.7	novel	3540	5	NA	NA	-18088	-5161	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGCCTGGGAATTTGGAC	NA	False	NA	NA	False	NA	NA	NA	57427398	57445630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57433205_57433251_57435885_57435956_57440546_57440683_57445542
ENSMUSG00000025971.7_57427399_57445630_2	chr1	+	1220	9	NIC	ENSMUSG00000025971.7	novel	3540	5	NA	NA	-18088	-5161	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGCCTGGGAATTTGGAC	NA	False	NA	NA	False	NA	NA	NA	57427398	57445630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57432828_57432854_57433205_57433251_57435885_57435956_57440546_57440683_57445542
ENSMUSG00000025971.7_57445723_57455064_1	chr1	+	1256	5	FSM	ENSMUSG00000025971.7	ENSMUST00000027114.6	3540	5	236	2048	-195	-2048	multi-exon	FALSE	canonical	3	301	junction_4	18.5926732881531	2287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGCTAGTGTTCTTTAAA	NA	False	NA	10	True	AATAAA	-13	NA	57445722	57455064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_57446382_57449070_57449143_57450881_57451009_57452398_57452547_57454814
ENSMUSG00000025971.7_57445918_57455064_1	chr1	+	1061	5	FSM	ENSMUSG00000025971.7	ENSMUST00000027114.6	3540	5	431	2048	0	-2048	multi-exon	FALSE	canonical	3	301	junction_4	18.5926732881531	2097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGCTAGTGTTCTTTAAA	NA	False	NA	10	True	AATAAA	-13	NA	57445917	57455064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_57446382_57449070_57449143_57450881_57451009_57452398_57452547_57454814
ENSMUSG00000025979.14_55170446_55192235_1	chr1	+	898	7	FSM	ENSMUSG00000025979.14	ENSMUST00000159311.8	1816	7	56	862	0	77	multi-exon	FALSE	canonical	3	33	junction_1	175.833886255055	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGCTAAACAATCATTGG	NA	False	NA	13	True	AATAAA	-21	NA	55170445	55192235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_55170519_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
ENSMUSG00000025979.14_55170446_55192235_2	chr1	+	961	8	FSM	ENSMUSG00000025979.14	ENSMUST00000162364.8	2840	8	56	1823	0	77	multi-exon	FALSE	canonical	3	402	junction_7	40.5985824624356	2535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGCTAAACAATCATTGG	NA	False	NA	13	True	AATAAA	-21	NA	55170445	55192235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_55170519_55175835_55175899_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
ENSMUSG00000025979.14_55170446_55192518_1	chr1	+	1244	8	FSM	ENSMUSG00000025979.14	ENSMUST00000162364.8	2840	8	56	1540	0	0	multi-exon	FALSE	canonical	3	402	junction_7	40.5985824624356	2669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTCTCCTACATAAAGTG	NA	False	NA	NA	False	NA	NA	NA	55170445	55192518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_55170519_55175835_55175899_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
ENSMUSG00000025979.14_55170446_55193259_1	chr1	+	1985	8	FSM	ENSMUSG00000025979.14	ENSMUST00000162364.8	2840	8	56	799	0	162	multi-exon	FALSE	canonical	3	402	junction_7	40.5985824624356	3541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	55170445	55193259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_55170519_55175835_55175899_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
ENSMUSG00000025980.15_55116994_55126995_1	chr1	-	2235	12	FSM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	188	0	188	0	multi-exon	FALSE	canonical	2	4506	junction_7	645.86437693097	11667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4643	False	NA	-6	True	AATAAA	-16	NA	55126995	55116993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
ENSMUSG00000025980.15_55116994_55126995_2	chr1	-	2229	12	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	188	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1850.97436034231	10624	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4643	False	NA	-6	True	AATAAA	-16	NA	55126995	55116993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122231_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
ENSMUSG00000025980.15_55116994_55127183_1	chr1	-	2213	12	NIC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	335	junction_11	1793.34097000842	9109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4455	False	NA	-6	True	AATAAA	-16	NA	55127183	55116993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55127147
ENSMUSG00000025980.15_55116994_55127402_1	chr1	-	2432	12	NIC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	335	junction_11	1793.34097000842	9248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4236	False	NA	-6	True	AATAAA	-16	NA	55127402	55116993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55127147
ENSMUSG00000025980.15_55117207_55126995_1	chr1	-	2022	12	FSM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	188	213	188	-213	multi-exon	FALSE	canonical	2	4506	junction_7	645.86437693097	2310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGGGTGCAAGAGCCATA	4643	False	NA	-17	True	AATAAA	-20	NA	55126995	55117206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
ENSMUSG00000025981.14_55092028_55111438_1	chr1	+	1211	5	FSM	ENSMUSG00000025981.14	ENSMUST00000027125.7	1733	5	99	423	0	326	multi-exon	FALSE	canonical	3	135	junction_4	22.7486263321547	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTAATGAAGTCTTAGCA	3658	False	NA	NA	False	ATTAAA	-17	NA	55092027	55111438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_55092150_55100433_55100584_55103339_55103533_55106655_55106758_55110794
ENSMUSG00000025982.14_55026188_55027297_1	chr1	-	664	2	ISM	ENSMUSG00000025982.14	ENSMUST00000190175.2	3350	3	2977	1856	2977	-1856	3prime_fragment	FALSE	canonical	3	1607	junction_1	0	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAATTTGTGTGTGTTTT	181	False	NA	-6	True	AATAAA	-16	NA	55027297	55026187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_55026652_55027097
ENSMUSG00000025982.14_55053929_55066554_1	chr1	-	599	5	ISM	ENSMUSG00000025982.14	ENSMUST00000191303.2	600	7	-1	2518	-1	1031	5prime_fragment	FALSE	canonical	3	24	junction_1	646.597778762037	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTAGATATGTTTGTG	NA	False	NA	NA	False	ATTAAA	-15	NA	55066554	55053928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_55054084_55055534_55055650_55055937_55056043_55058392_55058560_55066497
ENSMUSG00000025995.17_45834667_45844840_1	chr1	+	814	6	ISM	ENSMUSG00000025995.17	ENSMUST00000154436.8	3226	20	58	17924	0	233	5prime_fragment	FALSE	canonical	3	530	junction_5	70.1843287351243	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGCCTGGTGATTCTCA	NA	False	NA	NA	False	AATAAA	-19	NA	45834666	45844840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536
ENSMUSG00000025995.17_45834667_45862779_1	chr1	+	2612	21	FSM	ENSMUSG00000025995.17	ENSMUST00000027139.15	2953	21	341	0	0	0	multi-exon	FALSE	canonical	3	530	junction_5	51.2145243070752	905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAGCCTTGTGTTTAT	NA	False	NA	8	True	TATAAA	-24	NA	45834666	45862779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846920_45851200_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648_45858819_45859290_45859351_45861607_45861755_45862042_45862135_45862467
ENSMUSG00000026000.17_67042534_67078025_1	chr1	-	1382	10	NNC	ENSMUSG00000026000.17	novel	1385	10	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	186.772258494697	516	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGAGTTTTTATTTCC	NA	False	NA	-5	True	AATGAA	-16	NA	67078025	67042533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046205_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653_67077751_67077960
ENSMUSG00000026000.17_67042534_67078025_2	chr1	-	1592	9	NNC	ENSMUSG00000026000.17	novel	1385	10	NA	NA	-1	0	intron_retention	FALSE	canonical	0	0	junction_4	175.92096947209	611	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGAGTTTTTATTTCC	NA	False	NA	-5	True	AATGAA	-16	NA	67078025	67042533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046205_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653
ENSMUSG00000026000.17_67042534_67078025_3	chr1	-	1408	10	NNC	ENSMUSG00000026000.17	novel	4270	10	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	191.134042551876	541	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGAGTTTTTATTTCC	NA	False	NA	-5	True	AATGAA	-16	NA	67078025	67042533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046205_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653_67077751_67077934
ENSMUSG00000026003.6_66870436_66902436_1	chr1	-	1478	11	FSM	ENSMUSG00000026003.6	ENSMUST00000027153.6	1916	11	0	438	0	-438	multi-exon	FALSE	canonical	3	107	junction_4	12.5315601582564	1598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGGGAGAGAGAAATTTT	NA	False	NA	-13	True	AATAAA	-20	NA	66902436	66870435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_66870687_66876120_66876208_66877437_66877566_66880780_66880895_66882239_66882342_66884326_66884492_66887558_66887626_66892285_66892451_66893782_66893921_66896557_66896714_66902331
ENSMUSG00000026004.16_66740066_66758970_1	chr1	-	746	7	NNC	ENSMUSG00000026004.16	novel	3470	14	NA	NA	81399	18341	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1.49071198499986	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCCGGTTCCCTAGAGCG	6748	False	NA	NA	False	NA	NA	NA	66758970	66740065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_66740188_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912_66757064_66758939
ENSMUSG00000026005.16_66739990_66758669_1	chr1	+	2418	7	FSM	ENSMUSG00000026005.16	ENSMUST00000113995.2	2713	7	0	295	0	-295	multi-exon	FALSE	canonical	3	20	junction_2	373.751439982362	1678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAAGTTTGTAAGTATTG	NA	False	NA	15	True	NA	NA	NA	66739989	66758669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_66740177_66740775_66740808_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
ENSMUSG00000026005.16_66740066_66757899_1	chr1	+	1551	6	FSM	ENSMUSG00000026005.16	ENSMUST00000027157.10	2692	6	76	1065	0	721	multi-exon	FALSE	canonical	3	708	junction_1	56.5840967056999	888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGAAGGCTTATAGTTG	NA	False	NA	NA	False	ATTAAA	-13	NA	66740065	66757899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_66740188_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
ENSMUSG00000026005.16_66740066_66758669_1	chr1	+	2310	6	NIC	ENSMUSG00000026005.16	novel	2713	7	NA	NA	0	-295	combination_of_known_splicesites	FALSE	canonical	3	56	junction_1	305.506530208439	757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAAGTTTGTAAGTATTG	NA	False	NA	15	True	NA	NA	NA	66740065	66758669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_66740177_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
ENSMUSG00000026005.16_66740066_66758669_2	chr1	+	2321	6	FSM	ENSMUSG00000026005.16	ENSMUST00000027157.10	2692	6	76	295	0	-295	multi-exon	FALSE	canonical	3	708	junction_1	56.5840967056999	1447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAAGTTTGTAAGTATTG	NA	False	NA	15	True	NA	NA	NA	66740065	66758669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_66740188_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
ENSMUSG00000026019.16_60116852_60137334_1	chr1	-	1956	14	FSM	ENSMUSG00000026019.16	ENSMUST00000117438.8	3251	14	470	825	-29	-825	multi-exon	FALSE	canonical	3	160	junction_13	218.809771208535	4612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTCTACATTTTACCCT	NA	False	NA	-32	True	TATAAA	-24	NA	60137334	60116851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137301
ENSMUSG00000026019.16_60117302_60137334_1	chr1	-	1604	14	FSM	ENSMUSG00000026019.16	ENSMUST00000122038.8	2850	14	-29	1275	-29	-1275	multi-exon	FALSE	canonical	3	10	junction_13	257.719103084491	2341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTGTTGGGTCTTGTC	NA	False	NA	-22	True	AATGAA	-15	NA	60137334	60117301	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137203
ENSMUSG00000026019.16_60117302_60137334_2	chr1	-	1506	14	FSM	ENSMUSG00000026019.16	ENSMUST00000117438.8	3251	14	470	1275	-29	-1275	multi-exon	FALSE	canonical	3	160	junction_13	218.809771208535	2870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTGTTGGGTCTTGTC	NA	False	NA	-22	True	AATGAA	-15	NA	60137334	60117301	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137301
ENSMUSG00000026020.10_59724144_59750669_1	chr1	+	2114	16	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	171	junction_3	590.490628394916	3514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	59724143	59750669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731770_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
ENSMUSG00000026020.10_59724144_59750669_2	chr1	+	1997	15	FSM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	-24	7534	0	0	multi-exon	FALSE	canonical	3	1434	junction_3	210.570471503931	3847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	59724143	59750669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
ENSMUSG00000026020.10_59724144_59750669_3	chr1	+	1889	15	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	1	54	junction_13	512.353772070727	711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	59724143	59750669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748235_59749700_59749812_59750429
ENSMUSG00000026020.10_59724144_59750669_4	chr1	+	1989	15	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	526.483409626785	3769	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	59724143	59750669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743360_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
ENSMUSG00000026020.10_59749688_59750669_1	chr1	+	364	2	ISM	ENSMUSG00000026020.10	ENSMUST00000188390.2	585	7	5820	-230	5820	0	3prime_fragment	FALSE	canonical	3	2320	junction_1	0	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	59749687	59750669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_59749812_59750429
ENSMUSG00000026021.16_59678593_59709962_1	chr1	-	1281	6	NNC	ENSMUSG00000026021.16	novel	1215	5	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_4	1439.42688595149	13030	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGCTCCTTTTATTTTA	620	False	NA	0	True	AATAAA	-21	NA	59709962	59678592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_59679428_59681576_59681649_59683675_59683754_59691930_59692028_59694616_59694692_59709838
ENSMUSG00000026021.16_59678700_59709898_1	chr1	-	1013	5	FSM	ENSMUSG00000026021.16	ENSMUST00000091374.9	1215	5	95	107	0	-107	multi-exon	FALSE	canonical	3	3231	junction_1	432.6531520745	3320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACTGCTTTTGATTCTGT	684	False	NA	-8	True	AATAAA	-28	NA	59709898	59678699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_59679428_59681576_59681649_59683675_59683754_59694616_59694692_59709838
ENSMUSG00000026032.9_58625758_58635123_1	chr1	+	548	3	FSM	ENSMUSG00000026032.9	ENSMUST00000027193.9	763	3	215	0	215	0	multi-exon	FALSE	canonical	3	979	junction_1	90.5	18914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTCCCTCTAACCTCA	NA	False	NA	52	True	AATAAA	-20	NA	58625757	58635123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_58625830_58630248_58630409_58634807
ENSMUSG00000026035.16_58470156_58484338_1	chr1	-	775	7	FSM	ENSMUSG00000026035.16	ENSMUST00000114348.8	1033	7	255	3	-3	0	multi-exon	FALSE	canonical	3	104	junction_6	35.853482707015	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGAGTGTCCTTTTTT	NA	False	NA	-2	True	AATAGA	-25	NA	58484338	58470155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484304
ENSMUSG00000026035.16_58470156_58484645_1	chr1	-	861	7	NNC	ENSMUSG00000026035.16	novel	896	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_6	66.6149799636355	1055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGAGTGTCCTTTTTT	NA	False	NA	-2	True	AATAGA	-25	NA	58484645	58470155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484525
ENSMUSG00000026035.16_58470156_58484645_2	chr1	-	789	7	NNC	ENSMUSG00000026035.16	novel	896	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_6	72.861550598073	496	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGAGTGTCCTTTTTT	NA	False	NA	-2	True	AATAGA	-25	NA	58484645	58470155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484597
ENSMUSG00000026036.18_58470156_58484590_1	chr1	+	1362	7	NIC	ENSMUSG00000026036.18	novel	3769	7	NA	NA	-14154	-2619	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACGCACAGGACCAATTCCG	NA	False	NA	NA	False	NA	NA	NA	58470155	58484590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58483969
ENSMUSG00000026036.18_58470156_58484590_2	chr1	+	959	6	NIC	ENSMUSG00000026036.18	novel	3769	7	NA	NA	-14154	-2619	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACGCACAGGACCAATTCCG	NA	False	NA	NA	False	NA	NA	NA	58470155	58484590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_58470490_58473489_58473609_58480001_58480096_58481683_58481759_58483747_58483799_58484304
ENSMUSG00000026036.18_58470156_58484645_1	chr1	+	818	7	NIC	ENSMUSG00000026036.18	novel	3769	7	NA	NA	-14154	-2564	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACGCACAGGACAACTTCCG	NA	False	NA	NA	False	NA	NA	NA	58470155	58484645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484568
ENSMUSG00000026036.18_58484426_58500684_1	chr1	+	1722	7	FSM	ENSMUSG00000026036.18	ENSMUST00000087521.13	3769	7	116	1931	0	141	multi-exon	FALSE	canonical	3	215	junction_3	28.6787765119473	1000	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTTTGTTTCTTGGT	NA	False	NA	17	True	ATTAAA	-17	NA	58484425	58500684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_58484794_58486792_58487249_58489545_58489709_58491247_58491375_58494755_58494895_58496938_58497023_58500299
ENSMUSG00000026036.18_58484787_58500684_1	chr1	+	1361	7	FSM	ENSMUSG00000026036.18	ENSMUST00000087521.13	3769	7	477	1931	0	141	multi-exon	FALSE	canonical	3	215	junction_3	28.6787765119473	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTTTGTTTCTTGGT	NA	False	NA	17	True	ATTAAA	-17	NA	58484786	58500684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_58484794_58486792_58487249_58489545_58489709_58491247_58491375_58494755_58494895_58496938_58497023_58500299
ENSMUSG00000026036.18_58484787_58501435_1	chr1	+	2112	7	FSM	ENSMUSG00000026036.18	ENSMUST00000087521.13	3769	7	477	1180	0	10	multi-exon	FALSE	canonical	3	215	junction_3	28.6787765119473	940	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACTGTATTTCTCTATGA	NA	False	NA	23	True	NA	NA	NA	58484786	58501435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_58484794_58486792_58487249_58489545_58489709_58491247_58491375_58494755_58494895_58496938_58497023_58500299
ENSMUSG00000026036.18_58502352_58544086_1	chr1	+	2957	18	NIC	ENSMUSG00000026036.18	novel	3769	7	NA	NA	5508	23111	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	882	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCAAGGGAGCTGCGCGC	NA	False	NA	NA	False	NA	NA	NA	58502351	58544086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
ENSMUSG00000026036.18_58502631_58544086_1	chr1	+	2678	18	Genic_Genomic	ENSMUSG00000026036.18	novel	2168	7	NA	NA	5787	23111	multi-exon	FALSE	non_canonical	0	0	junction_1	0	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCAAGGGAGCTGCGCGC	NA	False	NA	NA	False	NA	NA	NA	58502630	58544086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
ENSMUSG00000026036.18_58503138_58544086_1	chr1	+	2171	18	Genic_Genomic	ENSMUSG00000026036.18	novel	2168	7	NA	NA	6294	23111	multi-exon	FALSE	non_canonical	0	0	junction_1	0	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCAAGGGAGCTGCGCGC	NA	False	NA	NA	False	NA	NA	NA	58503137	58544086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
ENSMUSG00000026037.15_58502631_58544086_1	chr1	-	2672	18	NIC	ENSMUSG00000026037.15	novel	3561	18	NA	NA	-2	-701	combination_of_known_junctions	FALSE	canonical	3	142	junction_17	104.64575272802	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGACATTTTCTATTTTC	NA	False	NA	-5	True	AATAAA	-21	NA	58544086	58502630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541044_58543930
ENSMUSG00000026037.15_58503138_58544086_1	chr1	-	2165	18	NIC	ENSMUSG00000026037.15	novel	3561	18	NA	NA	-2	225	combination_of_known_junctions	FALSE	canonical	3	142	junction_17	104.64575272802	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTCTCTGGAGACTTCT	NA	False	NA	-14	True	GATAAA	-16	NA	58544086	58503137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541044_58543930
ENSMUSG00000026047.14_44146047_44157925_1	chr1	-	1975	10	FSM	ENSMUSG00000026047.14	ENSMUST00000065767.9	2359	10	43	341	0	0	multi-exon	FALSE	canonical	3	275	junction_6	34.7545183135931	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGTCTGTTTTGTTACAG	NA	False	NA	-7	True	AATAAA	-15	NA	44157925	44146046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152043_44152162_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
ENSMUSG00000026048.17_44187069_44200317_1	chr1	+	802	5	ISM	ENSMUSG00000026048.17	ENSMUST00000027214.4	3907	15	62	20103	0	-687	5prime_fragment	FALSE	canonical	0	0	junction_3	40.0398239256868	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGTGTTTCTCATTGC	NA	False	NA	NA	False	AATAAA	-19	NA	44187068	44200317	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_44187311_44196096_44196273_44197303_44197420_44197964_44198052_44200136
ENSMUSG00000026049.12_44125776_44141583_1	chr1	-	1187	6	FSM	ENSMUSG00000026049.12	ENSMUST00000150911.8	960	6	18	-245	0	0	multi-exon	FALSE	canonical	3	213	junction_5	82.045353311446	3809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGTGCCTTTGTTTTAC	NA	False	NA	-3	True	ATTAAA	-17	NA	44141583	44125775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141487
ENSMUSG00000026049.12_44125776_44141583_2	chr1	-	956	5	NIC	ENSMUSG00000026049.12	novel	1122	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_3	165.394981786026	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGTGCCTTTGTTTTAC	NA	False	NA	-3	True	ATTAAA	-17	NA	44141583	44125775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_44126224_44127002_44127209_44127635_44127688_44139007_44139162_44141487
ENSMUSG00000026077.16_39237434_39352157_1	chr1	+	705	7	NNC	ENSMUSG00000026077.16	novel	484	3	NA	NA	4141	25461	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.93347457373532	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCGTCCTATTCTTTCAA	NA	False	NA	NA	False	TATAAA	-41	NA	39237433	39352157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_39237508_39302399_39302457_39326548_39326698_39331767_39331860_39339724_39339815_39350921_39351043_39352035
ENSMUSG00000026078.11_39026922_39035502_1	chr1	+	864	6	FSM	ENSMUSG00000026078.11	ENSMUST00000027247.11	3914	6	2233	817	0	-225	multi-exon	FALSE	canonical	3	825	junction_1	70.5532423067856	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGCTGAACTTTTTTAA	NA	False	NA	NA	False	TTTAAA	-22	NA	39026921	39035502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_39026931_39030326_39030457_39033995_39034087_39034325_39034470_39034815_39035025_39035221
ENSMUSG00000026078.11_39026922_39035727_1	chr1	+	1089	6	FSM	ENSMUSG00000026078.11	ENSMUST00000027247.11	3914	6	2233	592	0	0	multi-exon	FALSE	canonical	3	825	junction_1	70.5532423067856	4279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACAGTGCAAAAAATGAGA	NA	False	NA	NA	False	AATAAA	-26	NA	39026921	39035727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_39026931_39030326_39030457_39033995_39034087_39034325_39034470_39034815_39035025_39035221
ENSMUSG00000026078.11_39026922_39036320_1	chr1	+	1682	6	FSM	ENSMUSG00000026078.11	ENSMUST00000027247.11	3914	6	2233	-1	0	1	multi-exon	FALSE	canonical	3	825	junction_1	70.5532423067856	4414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTGTAAGATTTATTT	NA	False	NA	4	True	AATACA	-14	NA	39026921	39036320	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_39026931_39030326_39030457_39033995_39034087_39034325_39034470_39034815_39035025_39035221
ENSMUSG00000026083.13_38037091_38061292_1	chr1	+	1462	6	ISM	ENSMUSG00000026083.13	ENSMUST00000192548.6	5788	22	-119	29810	0	-23229	5prime_fragment	FALSE	canonical	3	510	junction_5	62.9558575511445	6549	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAAAAGAACGGTTAAA	1289	False	NA	NA	False	NA	NA	NA	38037090	38061292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945_38058616_38060674_38060893_38061244
ENSMUSG00000026083.13_38037210_38061292_1	chr1	+	1343	6	ISM	ENSMUSG00000026083.13	ENSMUST00000192548.6	5788	22	0	29810	0	-23229	5prime_fragment	FALSE	canonical	3	510	junction_5	62.9558575511445	6519	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAAAAGAACGGTTAAA	1408	False	NA	NA	False	NA	NA	NA	38037209	38061292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945_38058616_38060674_38060893_38061244
ENSMUSG00000026087.12_37929624_37937419_1	chr1	+	706	6	FSM	ENSMUSG00000026087.12	ENSMUST00000027256.12	969	6	66	197	0	0	multi-exon	FALSE	canonical	3	545	junction_1	191.904559612324	8696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGCTGATGGAGTCCTG	NA	False	NA	20	True	ATTAAA	-20	NA	37929623	37937419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_37929666_37932023_37932105_37933019_37933097_37934410_37934492_37936768_37936916_37937141
ENSMUSG00000026088.16_37917969_37929357_1	chr1	-	1096	7	FSM	ENSMUSG00000026088.16	ENSMUST00000027257.10	1231	7	135	0	0	0	multi-exon	FALSE	canonical	3	173	junction_5	18.2543754267908	1226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGATCCACTCACCTG	NA	False	NA	0	True	AATAAA	-19	NA	37929357	37917968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_37918445_37918640_37918702_37920013_37920130_37920779_37920867_37921642_37921780_37924295_37924398_37929240
ENSMUSG00000026088.16_37917969_37929492_1	chr1	-	923	6	NNC	ENSMUSG00000026088.16	novel	1231	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	83.1903840596977	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGATCCACTCACCTG	NA	False	NA	0	True	AATAAA	-19	NA	37929492	37917968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_37918198_37920013_37920130_37920779_37920867_37921642_37921780_37924295_37924398_37929240
ENSMUSG00000026088.16_37917969_37929492_2	chr1	-	1195	7	NNC	ENSMUSG00000026088.16	novel	1231	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	74.5087616026166	1505	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGATCCACTCACCTG	NA	False	NA	0	True	AATAAA	-19	NA	37929492	37917968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_37918445_37918640_37918702_37920013_37920130_37920815_37920867_37921642_37921780_37924295_37924398_37929240
ENSMUSG00000026094.15_53795206_53824340_1	chr1	-	2709	8	FSM	ENSMUSG00000026094.15	ENSMUST00000027263.14	3293	8	43	541	-24	-541	multi-exon	TRUE	canonical	3	57	junction_1	6.25316246521123	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTGAATAATAAGTATGCC	729	False	NA	54	True	NA	NA	NA	53824340	53795205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_53796930_53800140_53800321_53801747_53801797_53803190_53803318_53805079_53805225_53810768_53810982_53815675_53815839_53824232
ENSMUSG00000026094.15_53796329_53824340_1	chr1	-	1586	8	FSM	ENSMUSG00000026094.15	ENSMUST00000027263.14	3293	8	43	1664	-24	-1664	multi-exon	FALSE	canonical	3	57	junction_1	6.25316246521123	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAACAGGAATTTAGTAG	729	False	NA	NA	False	AGTAAA	-14	NA	53824340	53796328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_53796930_53800140_53800321_53801747_53801797_53803190_53803318_53805079_53805225_53810768_53810982_53815675_53815839_53824232
ENSMUSG00000026095.16_53383804_53391729_1	chr1	-	801	6	FSM	ENSMUSG00000026095.16	ENSMUST00000123519.9	983	6	182	0	0	0	multi-exon	TRUE	canonical	3	13	junction_2	221.433872747599	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGGGTGTAGTAGTT	NA	False	NA	-30	True	AATAAA	-13	NA	53391729	53383803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_53384139_53385738_53385921_53387604_53387718_53389145_53389222_53390038_53390093_53391688
ENSMUSG00000026096.15_53352813_53365326_1	chr1	+	1274	7	NIC	ENSMUSG00000026096.15	novel	1723	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	47.461387815079	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATCATTTCGTGTTTCA	NA	False	NA	11	True	AATAAA	-31	NA	53352812	53365326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_53353018_53354014_53354259_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
ENSMUSG00000026096.15_53352813_53365326_2	chr1	+	1202	6	NIC	ENSMUSG00000026096.15	novel	1592	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_4	69.3501261714786	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATCATTTCGTGTTTCA	NA	False	NA	11	True	AATAAA	-31	NA	53352812	53365326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_53353018_53354014_53354259_53359101_53359456_53360238_53360370_53362325_53362430_53365162
ENSMUSG00000026107.12_51509457_51517558_2	chr1	-	2028	6	FSM	ENSMUSG00000026107.12	ENSMUST00000027279.12	2838	6	0	810	0	-441	multi-exon	FALSE	canonical	3	37	junction_5	8.25590697622012	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAGGCTAATCTGATTAT	NA	False	NA	NA	False	NA	NA	NA	51517558	51509456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51516983
ENSMUSG00000026111.16_37469258_37478068_1	chr1	+	1114	6	NIC	ENSMUSG00000026111.16	novel	1179	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	188.928134485047	2366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	37469257	37478068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_37469419_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
ENSMUSG00000026111.16_37469258_37478068_2	chr1	+	1270	6	FSM	ENSMUSG00000026111.16	ENSMUST00000027285.13	1414	6	7	137	0	0	multi-exon	FALSE	canonical	3	180	junction_1	129.498416978741	2479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	37469257	37478068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_37469575_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
ENSMUSG00000026112.8_37459405_37469113_1	chr1	-	584	3	NNC	ENSMUSG00000026112.8	novel	3863	3	NA	NA	-32	-3240	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	192	1074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGACTCTTCGATCAGAT	6343	False	NA	-7	True	AATGAA	-15	NA	37469113	37459404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_37459741_37467422_37467507_37468949
ENSMUSG00000026112.8_37459405_37469113_2	chr1	-	552	3	FSM	ENSMUSG00000026112.8	ENSMUST00000027286.7	3863	3	71	3240	-32	-3240	multi-exon	FALSE	canonical	3	395	junction_2	27.5	1174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGACTCTTCGATCAGAT	6343	False	NA	-7	True	AATGAA	-15	NA	37469113	37459404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_37459709_37467422_37467507_37468949
ENSMUSG00000026112.8_37459507_37469113_1	chr1	-	450	3	FSM	ENSMUSG00000026112.8	ENSMUST00000027286.7	3863	3	71	3342	-32	-3342	multi-exon	FALSE	canonical	3	395	junction_2	27.5	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTCTGCTGGCTGAAGTC	6343	False	NA	-109	True	NA	NA	NA	37469113	37459506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_37459709_37467422_37467507_37468949
ENSMUSG00000026123.12_34889057_34908661_1	chr1	+	800	7	FSM	ENSMUSG00000026123.12	ENSMUST00000156687.8	5176	7	0	4376	0	-4376	multi-exon	FALSE	canonical	3	235	junction_4	21.2733531808118	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTACAGTGCTAGAGTGA	NA	False	NA	NA	False	NA	NA	NA	34889056	34908661	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_34889145_34900953_34900999_34902086_34902240_34902551_34902655_34903553_34903594_34905221_34905312_34908380
ENSMUSG00000026123.12_34889057_34916245_1	chr1	+	879	8	FSM	ENSMUSG00000026123.12	ENSMUST00000027297.11	3279	8	-16	2416	0	-2413	multi-exon	FALSE	canonical	3	235	junction_4	21.365621823817	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGGTAATCTAATAATTGT	NA	False	NA	NA	False	TTTAAA	-14	NA	34889056	34916245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_34889145_34900953_34900999_34902086_34902240_34902551_34902655_34903553_34903594_34905221_34905312_34908380_34908487_34915991
ENSMUSG00000026127.14_34478592_34484040_1	chr1	+	1779	9	FSM	ENSMUSG00000026127.14	ENSMUST00000027303.14	5836	9	-340	4397	-340	445	multi-exon	FALSE	canonical	3	439	junction_1	56.5552826887109	2097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCGTCTATTCCCTGCC	5273	False	NA	15	True	NA	NA	NA	34478591	34484040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34483438
ENSMUSG00000026127.14_34478932_34484040_1	chr1	+	1439	9	FSM	ENSMUSG00000026127.14	ENSMUST00000027303.14	5836	9	0	4397	0	445	multi-exon	FALSE	canonical	3	439	junction_1	56.5552826887109	2058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCGTCTATTCCCTGCC	5613	False	NA	15	True	NA	NA	NA	34478931	34484040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34483438
ENSMUSG00000026127.14_34478932_34493588_1	chr1	+	901	9	NNC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	0	5151	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_8	171.809305626907	470	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATACCAGTGGCCTCTCT	5613	False	NA	NA	False	NA	NA	NA	34478931	34493588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34493524
ENSMUSG00000026150.15_82702639_82729362_1	chr1	+	898	7	NIC	ENSMUSG00000026150.15	novel	1715	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	326	junction_5	73.6809940818451	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAGAAATGGTCATGTA	NA	False	NA	NA	False	AATAAA	-10	NA	82702638	82729362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82728240_82728326_82729305
ENSMUSG00000026150.15_82702639_82729502_1	chr1	+	1257	9	FSM	ENSMUSG00000026150.15	ENSMUST00000078332.13	1894	9	28	609	0	53	multi-exon	FALSE	canonical	3	24	junction_6	190.780264637095	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTGTCTTTGCATCA	NA	False	NA	17	True	TATAAA	-17	NA	82702638	82729502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82719538_82719698_82724803_82724864_82728240_82728326_82729305
ENSMUSG00000026150.15_82702639_82729502_2	chr1	+	1098	8	FSM	ENSMUSG00000026150.15	ENSMUST00000160786.8	1645	8	-22	569	0	53	multi-exon	FALSE	canonical	3	146	junction_5	134.32947615198	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTGTCTTTGCATCA	NA	False	NA	17	True	TATAAA	-17	NA	82702638	82729502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82724803_82724864_82728240_82728326_82729305
ENSMUSG00000026150.15_82702639_82729502_3	chr1	+	1038	7	NIC	ENSMUSG00000026150.15	novel	1715	8	NA	NA	0	53	combination_of_known_junctions	FALSE	canonical	3	326	junction_5	73.6809940818451	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTGTCTTTGCATCA	NA	False	NA	17	True	TATAAA	-17	NA	82702638	82729502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82728240_82728326_82729305
ENSMUSG00000026150.15_82702639_82730111_1	chr1	+	1647	7	NIC	ENSMUSG00000026150.15	novel	1715	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	326	junction_5	73.6809940818451	883	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	False	NA	13	True	AATAAA	-13	NA	82702638	82730111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82728240_82728326_82729305
ENSMUSG00000026162.9_75006513_75101878_1	chr1	-	1327	8	NNC	ENSMUSG00000026162.9	novel	1586	8	NA	NA	-34	-215	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	8.89622712968015	179	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACTGTTGAGGTTACCTGT	NA	False	NA	-8	True	AATAAA	-17	NA	75101878	75006512	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_75006928_75007327_75007435_75007953_75008072_75084467_75084527_75085659_75085799_75094701_75094915_75097219_75097397_75101779
ENSMUSG00000026171.13_74632907_74640540_1	chr1	-	1555	9	NIC	ENSMUSG00000026171.13	novel	1479	10	NA	NA	-4	0	intron_retention	FALSE	canonical	3	22	junction_3	29.3233588628588	1259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTATGTGGTATGACTCTT	NA	False	NA	NA	False	AATAAA	-30	NA	74640540	74632906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_74633562_74633718_74633854_74634367_74634458_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637952_74638224_74638300_74640483
ENSMUSG00000026172.13_74627448_74631348_1	chr1	+	1647	8	FSM	ENSMUSG00000026172.13	ENSMUST00000027358.11	1890	8	-11	254	0	0	multi-exon	FALSE	canonical	3	21	junction_1	42.4562199476696	807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGGTACCTACAAGATCTA	1131	False	NA	13	True	AATAAA	-14	NA	74627447	74631348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_74627647_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
ENSMUSG00000026172.13_74627533_74631283_1	chr1	+	1497	8	FSM	ENSMUSG00000026172.13	ENSMUST00000027358.11	1890	8	74	319	0	0	multi-exon	FALSE	canonical	3	21	junction_1	42.4562199476696	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGCTTGTGCCTTTCCTC	1216	False	NA	4	True	CATAAA	-16	NA	74627532	74631283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_74627647_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
ENSMUSG00000026174.10_74545494_74558093_1	chr1	+	341	3	ISM	ENSMUSG00000026174.10	ENSMUST00000087215.7	3268	8	277	11908	275	-8153	5prime_fragment	FALSE	canonical	3	1056	junction_1	26.5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCTTGACAGCACACCAG	1137	False	NA	NA	False	NA	NA	NA	74545493	74558093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_74545621_74556228_74556409_74558059
ENSMUSG00000026177.12_74422759_74425221_1	chr1	+	1193	5	ISM	ENSMUSG00000026177.12	ENSMUST00000027368.6	2315	15	8397	0	0	0	3prime_fragment	FALSE	canonical	3	29	junction_1	7.87400787401181	130	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAAGAGTTCTAGGTTA	4321	False	NA	NA	False	NA	NA	NA	74422758	74425221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_74422904_74423182_74423333_74423855_74423930_74424299_74424454_74424551
ENSMUSG00000026177.12_74422759_74425221_2	chr1	+	1039	4	NIC	ENSMUSG00000026177.12	novel	2315	15	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	20.8859335970941	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAAGAGTTCTAGGTTA	4321	False	NA	NA	False	NA	NA	NA	74422758	74425221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_74422904_74423182_74423333_74423855_74423930_74424551
ENSMUSG00000026179.15_74324213_74326613_1	chr1	+	616	3	FSM	ENSMUSG00000026179.15	ENSMUST00000113805.8	740	3	124	0	0	0	multi-exon	FALSE	canonical	3	1381	junction_1	89	7509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCCAGGTTGAATTTGT	NA	False	NA	6	True	AATAAA	-24	NA	74324212	74326613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_74324297_74325000_74325170_74326250
ENSMUSG00000026187.10_72346586_72369246_1	chr1	+	1219	9	ISM	ENSMUSG00000026187.10	ENSMUST00000027379.10	2549	21	0	64865	0	-64865	5prime_fragment	FALSE	canonical	3	464	junction_5	78.3165651379068	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCGTTGTTTTATTTAC	322	False	NA	NA	False	NA	NA	NA	72346585	72369246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084
ENSMUSG00000026187.10_72346692_72355242_1	chr1	+	1007	5	ISM	ENSMUSG00000026187.10	ENSMUST00000027379.10	2549	21	106	78869	106	-78869	5prime_fragment	FALSE	canonical	3	487	junction_1	72.2322642591245	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGGGAGAAAACGTGTAT	428	False	NA	NA	False	AATAAA	-23	NA	72346691	72355242	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617
ENSMUSG00000026187.10_72346692_72434112_1	chr1	+	2444	21	FSM	ENSMUSG00000026187.10	ENSMUST00000027379.10	2549	21	106	-1	106	1	multi-exon	FALSE	canonical	3	464	junction_5	74.8852455427636	1524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGAAGTCTCAT	428	False	NA	23	True	TATAAA	-29	NA	72346691	72434112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
ENSMUSG00000026189.14_72298331_72301355_1	chr1	-	507	2	ISM	ENSMUSG00000026189.14	ENSMUST00000134840.8	1120	8	22063	5	22063	0	3prime_fragment	FALSE	canonical	3	249	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTTATCTTTTAAGGATT	NA	False	NA	-6	True	AATAAA	-19	NA	72301355	72298330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_72298593_72301110
ENSMUSG00000026189.14_72298331_72323418_2	chr1	-	1126	8	NNC	ENSMUSG00000026189.14	novel	1186	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	101.282994120233	2072	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTTATCTTTTAAGGATT	NA	False	NA	-6	True	AATAAA	-19	NA	72323418	72298330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_72298593_72301110_72301223_72306565_72306677_72309435_72309533_72314044_72314127_72315324_72315486_72316445_72316580_72323251
ENSMUSG00000026189.14_72298331_72323472_1	chr1	-	1019	7	NIC	ENSMUSG00000026189.14	novel	1186	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	66	junction_5	71.5675671422934	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTTATCTTTTAAGGATT	NA	False	NA	-6	True	AATAAA	-19	NA	72323472	72298330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_72298593_72301110_72301223_72306565_72306677_72309435_72309533_72314044_72314127_72316445_72316580_72323251
ENSMUSG00000026192.14_71596338_71618562_1	chr1	+	2583	16	NNC	ENSMUSG00000026192.14	novel	2845	16	NA	NA	0	-228	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	162.96210875197	5069	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGTTTGTGGTTACTTTT	NA	False	NA	13	True	AATAAA	-13	NA	71596337	71618562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600110_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71615959_71616944_71617101_71617710
ENSMUSG00000026192.14_71596338_71618562_2	chr1	+	2588	16	FSM	ENSMUSG00000026192.14	ENSMUST00000027384.6	2845	16	29	228	0	-228	multi-exon	FALSE	canonical	3	576	junction_4	38.3577313661217	5036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGTTTGTGGTTACTTTT	NA	False	NA	13	True	AATAAA	-13	NA	71596337	71618562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71615959_71616944_71617101_71617710
ENSMUSG00000026193.16_71624682_71630034_1	chr1	-	1091	4	ISM	ENSMUSG00000026193.16	ENSMUST00000185408.7	4022	17	18692	-3	196	0	3prime_fragment	FALSE	canonical	3	2714	junction_3	101.210451809858	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGTGGACGTCATTTCT	8529	False	NA	-9	True	AATAAA	-15	NA	71630034	71624681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925
ENSMUSG00000026196.8_71069526_71085899_1	chr1	-	647	3	ISM	ENSMUSG00000026196.8	ENSMUST00000027393.8	5659	11	56406	2869	56406	-2869	3prime_fragment	FALSE	canonical	3	41	junction_2	2.5	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAGGAATTCATTTTGAT	NA	False	NA	-41	True	AATAAA	-14	NA	71085899	71069525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_71070012_71070517_71070616_71085836
ENSMUSG00000026196.8_71069526_71142126_1	chr1	-	2611	11	FSM	ENSMUSG00000026196.8	ENSMUST00000027393.8	5659	11	179	2869	179	-2869	multi-exon	FALSE	canonical	3	27	junction_8	5.88642506110457	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAGGAATTCATTTTGAT	NA	False	NA	-41	True	AATAAA	-14	NA	71142126	71069525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_71070012_71070517_71070616_71085836_71085930_71086798_71086932_71092771_71092881_71104637_71104811_71106266_71106348_71113701_71114640_71127267_71127411_71128629_71128687_71141826
ENSMUSG00000026197.13_75145310_75148273_1	chr1	+	1085	10	NIC	ENSMUSG00000026197.13	novel	1206	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_9	47.0130005660373	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGTGCTGTTTCTTTTTC	2052	False	NA	16	True	AGTAAA	-22	NA	75145309	75148273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_75145352_75145474_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147980
ENSMUSG00000026198.16_75148363_75149311_1	chr1	-	547	4	ISM	ENSMUSG00000026198.16	ENSMUST00000160081.8	3772	16	7619	0	202	0	3prime_fragment	FALSE	canonical	3	155	junction_1	13.9283882771841	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGGCTGTGGTTTGGTTG	NA	False	NA	-4	True	AATAAA	-13	NA	75149311	75148362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_75148633_75148757_75148827_75148909_75149005_75149198
ENSMUSG00000026201.13_75187482_75190886_1	chr1	+	1484	8	NIC	ENSMUSG00000026201.13	novel	2876	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	65	junction_1	57.8389742195996	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187481	75190886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_75187669_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457
ENSMUSG00000026201.13_75187482_75190886_2	chr1	+	1638	7	NIC	ENSMUSG00000026201.13	novel	2876	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	167	junction_4	31.580584752872	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187481	75190886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189873_75190219_75190342_75190457
ENSMUSG00000026201.13_75187482_75190886_3	chr1	+	1512	8	FSM	ENSMUSG00000026201.13	ENSMUST00000027401.11	2876	8	0	1364	0	0	multi-exon	FALSE	canonical	3	167	junction_4	30.7265756142723	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187481	75190886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457
ENSMUSG00000026201.13_75187482_75190886_4	chr1	+	1416	7	NIC	ENSMUSG00000026201.13	novel	2876	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_5	75.900519687871	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187481	75190886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75190219_75190342_75190457
ENSMUSG00000026202.14_75191616_75195897_1	chr1	-	2055	4	FSM	ENSMUSG00000026202.14	ENSMUST00000186213.7	2840	4	41	744	-10	0	multi-exon	FALSE	canonical	3	248	junction_2	27.6526068692749	3662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTGCTTTCTTTTGGC	NA	False	NA	-2	True	ATTAAA	-20	NA	75195897	75191615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_75193238_75193470_75193620_75193855_75194079_75195836
ENSMUSG00000026202.14_75192256_75195897_1	chr1	-	1415	4	FSM	ENSMUSG00000026202.14	ENSMUST00000186213.7	2840	4	41	1384	-10	0	multi-exon	FALSE	canonical	3	248	junction_2	27.6526068692749	2381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCCTGTTCACTGTGTTT	NA	False	NA	-77	True	NA	NA	NA	75195897	75192255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_75193238_75193470_75193620_75193855_75194079_75195836
ENSMUSG00000026202.14_75192256_75195897_3	chr1	-	1648	3	FSM	ENSMUSG00000026202.14	ENSMUST00000187103.2	815	3	-10	-823	-10	0	multi-exon	FALSE	canonical	3	248	junction_1	30.5	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCCTGTTCACTGTGTTT	NA	False	NA	-77	True	NA	NA	NA	75195897	75192255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_75193620_75193855_75194079_75195836
ENSMUSG00000026208.10_75338674_75344360_1	chr1	+	1629	8	ISM	ENSMUSG00000026208.10	ENSMUST00000027409.10	3028	9	1701	863	0	-863	3prime_fragment	FALSE	canonical	3	24	junction_7	3.01695886884898	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCATGGCCCTGTCATCT	NA	False	NA	4	True	AATAAA	-15	NA	75338673	75344360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_75338863_75338956_75339053_75339208_75339371_75339537_75339664_75340114_75340336_75341971_75342016_75343403_75343487_75343652
ENSMUSG00000026209.16_75285209_75294093_1	chr1	-	1631	15	FSM	ENSMUSG00000026209.16	ENSMUST00000066668.14	2488	15	188	669	-2	0	multi-exon	FALSE	canonical	3	522	junction_14	119.683362013511	1245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	-1	True	ATTAAA	-17	NA	75294093	75285208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293978
ENSMUSG00000026209.16_75285209_75294281_1	chr1	-	1819	15	FSM	ENSMUSG00000026209.16	ENSMUST00000066668.14	2488	15	0	669	0	0	multi-exon	FALSE	canonical	3	522	junction_14	119.683362013511	1349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	-1	True	ATTAAA	-17	NA	75294281	75285208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293978
ENSMUSG00000026223.16_85822340_85836406_1	chr1	+	1902	6	FSM	ENSMUSG00000026223.16	ENSMUST00000027425.16	2230	6	338	-10	0	10	multi-exon	FALSE	canonical	3	192	junction_3	14.9853261559434	586	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAAACCTCTTCTGACTT	NA	False	NA	2	True	NA	NA	NA	85822339	85836406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_85822511_85830730_85830872_85832934_85833124_85834142_85834254_85834728_85834880_85835267
ENSMUSG00000026229.18_85992363_86003541_1	chr1	+	474	5	ISM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	22	63332	0	0	5prime_fragment	FALSE	canonical	3	1487	junction_4	69.2585734765018	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAACAGTGTGTGGAAAAT	NA	False	NA	NA	False	NA	NA	NA	85992362	86003541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520
ENSMUSG00000026229.18_85992363_86067007_1	chr1	+	3224	25	FSM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	22	-134	0	134	multi-exon	FALSE	canonical	3	1352	junction_6	102.249660417801	4902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATTGACCAGACTTTAGT	NA	False	NA	15	True	AATAAA	-15	NA	85992362	86067007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
ENSMUSG00000026229.18_85992414_86005853_1	chr1	+	1384	6	ISM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	73	61020	0	2312	5prime_fragment	FALSE	canonical	3	1487	junction_4	71.3481604528105	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTCTGTCTCGAAAAACC	NA	False	NA	NA	False	NA	NA	NA	85992413	86005853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077
ENSMUSG00000026229.18_86017712_86060489_1	chr1	+	1020	9	NNC	ENSMUSG00000026229.18	novel	3112	25	NA	NA	-20827	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	513.594912723053	1522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAAAAAGGAGGAGGA	NA	False	NA	48	True	NA	NA	NA	86017711	86060489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054287_86055857_86056028_86058358_86058452_86060435
ENSMUSG00000026234.13_86278218_86278621_1	chr1	-	285	2	NNC	ENSMUSG00000026234.13	novel	601	2	NA	NA	312	0	at_least_one_novel_splicesite	FALSE	canonical	1	39	junction_1	0	4406	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	-29	True	AGTAAA	-15	NA	86278621	86278217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_86278415_86278533
ENSMUSG00000026234.13_86278218_86278621_2	chr1	-	289	2	FSM	ENSMUSG00000026234.13	ENSMUST00000188682.2	601	2	312	0	312	0	multi-exon	FALSE	canonical	3	7412	junction_1	0	8592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	-29	True	AGTAAA	-15	NA	86278621	86278217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_86278419_86278533
ENSMUSG00000026234.13_86278218_86287086_1	chr1	-	2389	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	36	5777	0	0	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	23282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	-29	True	AGTAAA	-15	NA	86287086	86278217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
ENSMUSG00000026238.15_86284291_86458434_1	chr1	+	1289	7	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-170157	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10055.7619206878	96093	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTTCTGTGTGTA	NA	False	NA	57	True	NA	NA	NA	86284290	86458434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_86284339_86284805_86284825_86454441_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
ENSMUSG00000026238.15_86454448_86458160_1	chr1	+	933	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	67	at_least_one_novel_splicesite	FALSE	canonical	1	211	junction_1	9275.96190092974	2095	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCTTGTAAAAAAAAGCAAAA	NA	False	NA	NA	False	NA	NA	NA	86454447	86458160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_86454673_86456903_86456967_86457177_86457275_86457452_86457527_86457686
ENSMUSG00000026238.15_86454448_86458160_2	chr1	+	934	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	67	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	9439.51567547297	2398	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCTTGTAAAAAAAAGCAAAA	NA	False	NA	NA	False	NA	NA	NA	86454447	86458160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457275_86457460_86457527_86457686
ENSMUSG00000026238.15_86454448_86458314_1	chr1	+	1088	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	-120	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9439.51567547297	3127	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTCTATGAAGTTGCT	NA	False	NA	3	True	GATAAA	-22	NA	86454447	86458314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457275_86457460_86457527_86457686
ENSMUSG00000026238.15_86454448_86458434_1	chr1	+	1206	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	23	junction_3	10981.0089245023	13636	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTTCTGTGTGTA	NA	False	NA	57	True	NA	NA	NA	86454447	86458434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_86454673_86456903_86456967_86457177_86457279_86457457_86457527_86457686
ENSMUSG00000026238.15_86454448_86458434_2	chr1	+	1207	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	211	junction_1	9275.96190092974	45186	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTTCTGTGTGTA	NA	False	NA	57	True	NA	NA	NA	86454447	86458434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_86454673_86456903_86456967_86457177_86457275_86457452_86457527_86457686
ENSMUSG00000026238.15_86454448_86458434_3	chr1	+	1207	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9482.07599895719	48007	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTTCTGTGTGTA	NA	False	NA	57	True	NA	NA	NA	86454447	86458434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_86454673_86456894_86456967_86457186_86457275_86457452_86457527_86457686
ENSMUSG00000026238.15_86454448_86458434_4	chr1	+	1198	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9365.72429126547	35267	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTTCTGTGTGTA	NA	False	NA	57	True	NA	NA	NA	86454447	86458434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_86454673_86456912_86456967_86457177_86457275_86457452_86457527_86457686
ENSMUSG00000026238.15_86454448_86458434_5	chr1	+	1208	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9439.51567547297	54871	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTTCTGTGTGTA	NA	False	NA	57	True	NA	NA	NA	86454447	86458434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457275_86457460_86457527_86457686
ENSMUSG00000026238.15_86454448_86458434_6	chr1	+	1206	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	8722.60083060093	24405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTTCTGTGTGTA	NA	False	NA	57	True	NA	NA	NA	86454447	86458434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457538_86457707
ENSMUSG00000026245.17_78401722_78420299_1	chr1	-	289	2	ISM	ENSMUSG00000026245.17	ENSMUST00000189529.7	1801	17	45200	0	45133	0	3prime_fragment	FALSE	canonical	3	1276	junction_1	0	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTGCGTAGCTGCATTA	2403	False	NA	-2	True	AATAAA	-19	NA	78420299	78401721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_78401983_78420271
ENSMUSG00000026248.10_79753833_79759162_1	chr1	+	891	4	NNC	ENSMUSG00000026248.10	novel	1424	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	148.261780495027	145	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCTTTCCTTTCTTTAT	NA	False	NA	13	True	AATAAA	-15	NA	79753832	79759162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_79754029_79755574_79755609_79757204_79757384_79758680
ENSMUSG00000026248.10_79753833_79759162_2	chr1	+	1318	4	NNC	ENSMUSG00000026248.10	novel	1424	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	148.041285532861	805	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCTTTCCTTTCTTTAT	NA	False	NA	13	True	AATAAA	-15	NA	79753832	79759162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_79754021_79755574_79756044_79757204_79757384_79758680
ENSMUSG00000026249.11_79772038_79836353_1	chr1	-	2026	9	FSM	ENSMUSG00000026249.11	ENSMUST00000027467.11	2210	9	60	124	-1	-124	multi-exon	FALSE	canonical	3	45	junction_4	6.12244844812923	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTCGCTGGACACCATTT	NA	False	NA	-5	True	AATAAA	-14	NA	79836353	79772037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_79772760_79774542_79774627_79777184_79777272_79779172_79779274_79780563_79780763_79788270_79788469_79794444_79794673_79798993_79799275_79836227
ENSMUSG00000026251.14_87118329_87119647_1	chr1	+	697	3	FSM	ENSMUSG00000026251.14	ENSMUST00000189970.2	538	3	0	-159	0	159	multi-exon	FALSE	canonical	2	2	junction_1	1.5	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGGTGTGCATTGGAAG	NA	False	NA	NA	False	ATTAAA	-15	NA	87118328	87119647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_87118465_87118696_87118852_87119241
ENSMUSG00000026254.18_87141701_87155786_1	chr1	+	950	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113233.8	1807	7	65	792	0	0	multi-exon	FALSE	canonical	3	965	junction_1	498.771713534581	9583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTCATGCTCTTGCTC	NA	False	NA	15	True	AATAAA	-15	NA	87141700	87155786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
ENSMUSG00000026255.16_87236948_87238561_1	chr1	+	1325	3	NIC	ENSMUSG00000026255.16	novel	353	2	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	1.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCAGTGTGCCTTTTTGGT	NA	False	NA	NA	False	AATAAA	-25	NA	87236947	87238561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_87237219_87237382_87237569_87237693
ENSMUSG00000026260.13_92367208_92401499_1	chr1	-	1461	10	FSM	ENSMUSG00000026260.13	ENSMUST00000027478.7	2020	10	83	476	-10	-207	multi-exon	FALSE	canonical	3	1166	junction_5	87.5025220095095	1462	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGTGTCTGCGTGGCAC	NA	False	NA	-20	True	AATAAA	-20	NA	92401499	92367207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398538_92398708_92401384
ENSMUSG00000026273.14_93228927_93233591_1	chr1	-	1109	4	FSM	ENSMUSG00000026273.14	ENSMUST00000112944.8	3097	4	-6	1994	-5	0	multi-exon	FALSE	canonical	3	13	junction_1	30.4448499567478	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGGAGTCTTTTTCTCT	NA	False	NA	1	True	AATAAA	-39	NA	93233591	93228926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_93229307_93230439_93230625_93232329_93232829_93233546
ENSMUSG00000026273.14_93228927_93233591_3	chr1	-	1114	4	NNC	ENSMUSG00000026273.14	novel	1366	4	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	36.5270067514739	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGGAGTCTTTTTCTCT	NA	False	NA	1	True	AATAAA	-39	NA	93233591	93228926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_93229312_93230439_93230625_93232329_93232829_93233546
ENSMUSG00000026275.14_93271377_93292854_1	chr1	+	1157	10	FSM	ENSMUSG00000026275.14	ENSMUST00000027494.11	10315	10	801	8357	0	-8357	multi-exon	FALSE	canonical	3	496	junction_6	62.1028617061949	660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTGCTCCTGATGTCGT	NA	False	NA	NA	False	NA	NA	NA	93271376	93292854	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_93271434_93273877_93274010_93278046_93278103_93278670_93278737_93279227_93279359_93280238_93280402_93282050_93282168_93285478_93285584_93288447_93288535_93292611
ENSMUSG00000026275.14_93271377_93292987_1	chr1	+	1290	10	FSM	ENSMUSG00000026275.14	ENSMUST00000027494.11	10315	10	801	8224	0	-8224	multi-exon	FALSE	canonical	3	496	junction_6	62.1028617061949	2836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTGGTGAATTGATGAAA	NA	False	NA	15	True	ATTAAA	-16	NA	93271376	93292987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_93271434_93273877_93274010_93278046_93278103_93278670_93278737_93279227_93279359_93280238_93280402_93282050_93282168_93285478_93285584_93288447_93288535_93292611
ENSMUSG00000026275.14_93271377_93293260_1	chr1	+	1563	10	FSM	ENSMUSG00000026275.14	ENSMUST00000027494.11	10315	10	801	7951	0	-7951	multi-exon	FALSE	canonical	3	496	junction_6	62.1028617061949	3026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGCTGTAATCCTCAGTG	NA	False	NA	NA	False	AGTAAA	-16	NA	93271376	93293260	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_93271434_93273877_93274010_93278046_93278103_93278670_93278737_93279227_93279359_93280238_93280402_93282050_93282168_93285478_93285584_93288447_93288535_93292611
ENSMUSG00000026278.15_93613424_93623486_1	chr1	+	1426	5	FSM	ENSMUSG00000026278.15	ENSMUST00000027499.13	1468	5	42	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	2.9474565306379	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAGACTCTACTCTGCT	NA	False	NA	6	True	AATAAA	-16	NA	93613423	93623486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_93613577_93614139_93614392_93616878_93617008_93621781_93621946_93622758
ENSMUSG00000026279.15_93633113_93682372_1	chr1	-	1972	6	FSM	ENSMUSG00000026279.15	ENSMUST00000190116.7	5558	6	130	3456	0	0	multi-exon	FALSE	canonical	3	370	junction_4	24.3770383763081	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACTGTGTAGACTGTACA	NA	False	NA	-2	True	AATAAA	-37	NA	93682372	93633112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93653039_93677568_93678708_93682178
ENSMUSG00000026280.18_93682757_93715907_1	chr1	+	1657	14	NNC	ENSMUSG00000026280.18	novel	4173	13	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_10	119.519798562919	952	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGAATTTCTGGGGCAC	NA	False	NA	20	True	ATTAAA	-26	NA	93682756	93715907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712350_93712390_93712474_93712621_93713631_93713689_93714232_93714327_93715407
ENSMUSG00000026281.16_93720298_93729489_1	chr1	-	836	5	FSM	ENSMUSG00000026281.16	ENSMUST00000027503.14	1003	5	167	0	139	0	multi-exon	FALSE	canonical	3	1212	junction_3	505.005136112495	2674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGCTTTGGTTCTGCCCCT	2477	False	NA	-20	True	AATAAA	-24	NA	93729489	93720297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_93720666_93722447_93722646_93726101_93726193_93728523_93728633_93729419
ENSMUSG00000026281.16_93728217_93729489_1	chr1	-	486	2	FSM	ENSMUSG00000026281.16	ENSMUST00000112890.3	1055	2	139	430	139	-430	multi-exon	FALSE	canonical	3	2511	junction_1	0	1532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTTTTTGGTTTTGTTT	2477	False	NA	-6	True	ATTAAA	-16	NA	93729489	93728216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_93728633_93729419
ENSMUSG00000026281.16_93728217_93729628_1	chr1	-	633	2	NNC	ENSMUSG00000026281.16	novel	1055	2	NA	NA	0	-430	at_least_one_novel_splicesite	FALSE	canonical	3	131	junction_1	0	14695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTTTTTGGTTTTGTTT	2338	False	NA	-6	True	ATTAAA	-16	NA	93729628	93728216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_93728633_93729411
ENSMUSG00000026281.16_93728217_93729628_2	chr1	-	625	2	FSM	ENSMUSG00000026281.16	ENSMUST00000112890.3	1055	2	0	430	0	-430	multi-exon	FALSE	canonical	3	2511	junction_1	0	15477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTTTTTGGTTTTGTTT	2338	False	NA	-6	True	ATTAAA	-16	NA	93729628	93728216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_93728633_93729419
ENSMUSG00000026281.16_93728331_93729628_1	chr1	-	511	2	FSM	ENSMUSG00000026281.16	ENSMUST00000112890.3	1055	2	0	544	0	-544	multi-exon	FALSE	canonical	3	2511	junction_1	0	1187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGTCGTATTTGAGATAAAA	2338	False	NA	-120	True	GATAAA	-27	NA	93729628	93728330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_93728633_93729419
ENSMUSG00000026283.14_93731705_93746129_2	chr1	+	827	8	FSM	ENSMUSG00000026283.14	ENSMUST00000027505.13	4533	8	18	3688	0	25	multi-exon	FALSE	canonical	0	0	junction_4	74.6873756509937	489	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTATTTTGACTGATATTT	NA	False	NA	27	True	AATATA	-44	NA	93731704	93746129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_93731762_93733769_93733842_93739503_93739671_93740128_93740241_93740387_93740482_93744096_93744233_93744359_93744422_93746002
ENSMUSG00000026288.15_87603961_87611588_1	chr1	+	409	4	ISM	ENSMUSG00000026288.15	ENSMUST00000170300.8	3942	23	0	36636	0	15874	5prime_fragment	FALSE	canonical	3	485	junction_1	26.0426999794995	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGCCACCCACCCCAACC	9370	False	NA	NA	False	NA	NA	NA	87603960	87611588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464
ENSMUSG00000026288.15_87603961_87647434_1	chr1	+	3335	22	FSM	ENSMUSG00000026288.15	ENSMUST00000167032.2	4125	22	0	790	0	18	multi-exon	FALSE	canonical	3	377	junction_4	52.3837661581916	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGTGTTAAGTGCTTT	9370	False	NA	20	True	NA	NA	NA	87603960	87647434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
ENSMUSG00000026301.17_89969854_90017868_1	chr1	-	2075	12	NNC	ENSMUSG00000026301.17	novel	3210	19	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_11	22.6412919060188	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTAATTTGGTCACTGG	NA	False	NA	-1	True	AATAAA	-20	NA	90017868	89969853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_89970465_89973313_89973553_89975510_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017643
ENSMUSG00000026301.17_89975377_90017868_1	chr1	-	1349	10	ISM	ENSMUSG00000026301.17	ENSMUST00000189690.7	2060	12	-2	5520	-2	-5029	5prime_fragment	FALSE	canonical	3	59	junction_6	13.200261875442	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTATGAAATAATATTATGG	NA	False	NA	NA	False	NA	NA	NA	90017868	89975376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
ENSMUSG00000026305.16_90981176_91056666_1	chr1	+	2209	13	NIC	ENSMUSG00000026305.16	novel	2849	23	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_11	25.9117090649511	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGGTTTTGTTTTTTA	NA	False	NA	NA	False	AATGAA	-13	NA	90981175	91056666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
ENSMUSG00000026309.15_91303554_91326477_1	chr1	-	1321	12	NIC	ENSMUSG00000026309.15	novel	1368	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	85	junction_9	124.787157635487	598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATTTGAGTGACTGGTC	NA	False	NA	-9	True	AATAAA	-17	NA	91326477	91303553	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316066_91316169_91318328_91318386_91318853_91318920_91326372
ENSMUSG00000026317.8_14938855_14947279_1	chr8	+	1672	3	FSM	ENSMUSG00000026317.8	ENSMUST00000027554.8	6857	3	744	4441	-149	2220	multi-exon	FALSE	canonical	3	162	junction_1	24.5	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGATTTGCTGATCATATT	NA	False	NA	16	True	AAGAAA	-2	NA	14938854	14947279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_14939119_14944571_14945231_14946530
ENSMUSG00000026317.8_14938855_14947279_2	chr8	+	1804	4	NIC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-149	2220	combination_of_known_junctions	FALSE	canonical	3	37	junction_2	81.7897032367495	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGATTTGCTGATCATATT	NA	False	NA	16	True	AAGAAA	-2	NA	14938854	14947279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_14939119_14940491_14940624_14944571_14945231_14946530
ENSMUSG00000026317.8_14938855_14947939_1	chr8	+	2464	4	NIC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-149	2880	combination_of_known_junctions	FALSE	canonical	3	37	junction_2	81.7897032367495	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGAGGTATGATGCCTAT	NA	False	NA	10	True	TATAAA	-18	NA	14938854	14947939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_14939119_14940491_14940624_14944571_14945231_14946530
ENSMUSG00000026317.8_14938855_14947939_2	chr8	+	2332	3	FSM	ENSMUSG00000026317.8	ENSMUST00000027554.8	6857	3	744	3781	-149	2880	multi-exon	FALSE	canonical	3	162	junction_1	24.5	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGAGGTATGATGCCTAT	NA	False	NA	10	True	TATAAA	-18	NA	14938854	14947939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_14939119_14944571_14945231_14946530
ENSMUSG00000026333.15_97697904_97720491_1	chr1	+	1625	8	NIC	ENSMUSG00000026333.15	novel	2046	8	NA	NA	0	-203	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	18.8148877222268	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCATGCGTAGAATTCAGA	NA	False	NA	NA	False	AATAAA	-18	NA	97697903	97720491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_97697981_97703171_97703318_97705050_97705245_97710862_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
ENSMUSG00000026333.15_97697904_97720491_2	chr1	+	1836	8	FSM	ENSMUSG00000026333.15	ENSMUST00000112844.10	2046	8	7	203	0	-203	multi-exon	FALSE	canonical	3	41	junction_1	7.99744857273052	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCATGCGTAGAATTCAGA	NA	False	NA	NA	False	AATAAA	-18	NA	97697903	97720491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_97697981_97703171_97703318_97705050_97705245_97710651_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
ENSMUSG00000026339.19_121358824_121362692_1	chr1	+	594	2	ISM	ENSMUSG00000026339.19	ENSMUST00000128924.2	762	5	-13	9059	0	-9059	5prime_fragment	FALSE	canonical	3	91	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGGAGAGAGGGAGGGAG	NA	False	NA	NA	False	NA	NA	NA	121358823	121362692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_121358987_121362261
ENSMUSG00000026341.17_125320643_125363284_1	chr1	-	2559	12	NNC	ENSMUSG00000026341.17	novel	2565	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	732.10689956911	2903	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGATGGTTTTTCTTCGTG	NA	False	NA	-4	True	AATAAA	-20	NA	125363284	125320642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_125321822_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021
ENSMUSG00000026341.17_125320643_125363444_1	chr1	-	2725	12	FSM	ENSMUSG00000026341.17	ENSMUST00000178474.8	2565	12	-160	0	0	0	multi-exon	FALSE	canonical	3	2308	junction_6	123.717286351378	3025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGATGGTTTTTCTTCGTG	NA	False	NA	-4	True	AATAAA	-20	NA	125363444	125320642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021
ENSMUSG00000026353.10_128171899_128205329_1	chr1	+	2327	13	FSM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	0	1786	0	572	multi-exon	FALSE	canonical	3	326	junction_2	38.8918550456119	875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGATCTTATTTTTG	94	False	NA	14	True	AATAAA	-17	NA	128171898	128205329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190529_128190695_128194026_128194152_128197605_128197709_128200557_128200690_128202538_128202742_128204693
ENSMUSG00000026353.10_128172046_128205329_1	chr1	+	2180	13	FSM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	147	1786	147	572	multi-exon	FALSE	canonical	3	326	junction_2	38.8918550456119	851	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGATCTTATTTTTG	241	False	NA	14	True	AATAAA	-17	NA	128172045	128205329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190529_128190695_128194026_128194152_128197605_128197709_128200557_128200690_128202538_128202742_128204693
ENSMUSG00000026353.10_128172047_128184203_1	chr1	+	723	4	ISM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	148	22912	148	-3069	5prime_fragment	FALSE	canonical	3	326	junction_2	10.8012344973464	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTTATTTTTAATCCTG	242	False	NA	NA	False	NA	NA	NA	128172046	128184203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855
ENSMUSG00000026355.12_128259327_128287391_1	chr1	-	1264	6	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1427.22331819516	643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	-21	True	AATAAA	-17	NA	128287391	128259326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266027_128287195
ENSMUSG00000026355.12_128259327_128287391_3	chr1	-	2890	17	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	831.478568199446	2474	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	-21	True	AATAAA	-17	NA	128287391	128259326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266005_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
ENSMUSG00000026355.12_128259327_128287391_4	chr1	-	1340	7	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1307.01310245919	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	-21	True	AATAAA	-17	NA	128287391	128259326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266024_128283317_128283397_128287195
ENSMUSG00000026356.16_128291444_128344991_1	chr1	-	2065	16	NNC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	105	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_13	506.478544022899	5566	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTGTGTGACTTT	NA	False	NA	-4	True	AATAAA	-14	NA	128344991	128291443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333201_128341396_128341490_128343090_128343149_128344888
ENSMUSG00000026356.16_128291444_128344991_2	chr1	-	2070	16	FSM	ENSMUSG00000026356.16	ENSMUST00000027602.15	2175	16	105	0	105	0	multi-exon	FALSE	canonical	3	1712	junction_8	135.919976456737	5609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTGTGTGACTTT	NA	False	NA	-4	True	AATAAA	-14	NA	128344991	128291443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
ENSMUSG00000026356.16_128291444_128345116_1	chr1	-	2190	16	NNC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	506.478544022899	5713	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTGTGTGACTTT	NA	False	NA	-4	True	AATAAA	-14	NA	128345116	128291443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333201_128341396_128341490_128343090_128343149_128344888
ENSMUSG00000026374.15_118228355_118238966_1	chr1	-	1036	6	FSM	ENSMUSG00000026374.15	ENSMUST00000027623.9	7063	6	180	5847	0	264	multi-exon	FALSE	canonical	0	0	junction_5	408.588007655633	10701	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAGAAACCTTTCCACG	NA	False	NA	NA	False	NA	NA	NA	118238966	118228354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_118228768_118232420_118232501_118232929_118233046_118236474_118236572_118237502_118237597_118238730
ENSMUSG00000026377.13_118249584_118261320_1	chr1	+	1636	7	NNC	ENSMUSG00000026377.13	novel	1889	7	NA	NA	0	-232	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	165.910618506874	1581	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGCTTCCTTTTTGTCCA	NA	False	NA	24	True	AATATA	-18	NA	118249583	118261320	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_118249728_118251317_118251456_118255354_118255464_118257082_118257295_118258335_118258393_118260073_118260209_118260479
ENSMUSG00000026377.13_118249584_118261320_2	chr1	+	1634	7	NNC	ENSMUSG00000026377.13	novel	1889	7	NA	NA	0	-232	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	170.081026441974	1596	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGCTTCCTTTTTGTCCA	NA	False	NA	24	True	AATATA	-18	NA	118249583	118261320	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_118249728_118251311_118251448_118255354_118255464_118257082_118257295_118258335_118258393_118260073_118260209_118260479
ENSMUSG00000026377.13_118249584_118261320_3	chr1	+	1629	7	NNC	ENSMUSG00000026377.13	novel	1889	7	NA	NA	0	-232	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	172.681466547192	1583	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGCTTCCTTTTTGTCCA	NA	False	NA	24	True	AATATA	-18	NA	118249583	118261320	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_118249728_118251311_118251456_118255354_118255464_118257082_118257295_118258335_118258393_118260073_118260209_118260492
ENSMUSG00000026380.11_118555676_118560515_1	chr1	+	701	2	ISM	ENSMUSG00000026380.11	ENSMUST00000190652.2	478	3	1	4981	0	-4981	5prime_fragment	FALSE	canonical	3	2048	junction_1	0	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAACCAGGAGTGGTGATG	NA	False	NA	NA	False	NA	NA	NA	118555675	118560515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_118555833_118559971
ENSMUSG00000026383.15_119475861_119576681_1	chr1	-	3363	25	FSM	ENSMUSG00000026383.15	ENSMUST00000052404.13	6442	25	-15	3094	-15	0	multi-exon	FALSE	canonical	3	76	junction_7	8.61674322983393	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGATAATG	NA	False	NA	NA	False	TTTAAA	-37	NA	119576681	119475860	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_119476926_119477616_119477748_119478251_119478294_119481935_119482011_119482781_119482873_119495525_119495591_119497774_119497904_119500535_119500634_119506643_119506808_119526734_119526851_119527927_119527968_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576514
ENSMUSG00000026385.17_120041130_120048747_1	chr1	-	388	4	FSM	ENSMUSG00000026385.17	ENSMUST00000027634.13	569	4	61	120	0	0	multi-exon	FALSE	canonical	3	2709	junction_1	24.2532930181083	799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAATGTAGATGATATGG	NA	False	NA	-121	True	NA	NA	NA	120048747	120041129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_120041264_120044115_120044179_120047624_120047743_120048674
ENSMUSG00000026398.15_136772014_136881368_1	chr1	-	2943	9	FSM	ENSMUSG00000026398.15	ENSMUST00000192929.6	1756	9	0	-1187	0	0	multi-exon	FALSE	canonical	3	24	junction_8	13.3041346956501	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAAAAAAAATACTGG	NA	False	NA	NA	False	NA	NA	NA	136881368	136772013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_136773449_136810001_136810150_136818420_136818541_136868146_136868788_136871024_136871167_136872696_136872816_136876459_136876598_136879839_136879903_136881231
ENSMUSG00000026404.13_136343009_136367896_1	chr1	+	2037	7	NIC	ENSMUSG00000026404.13	novel	2166	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_6	23.4004985701872	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTATTTATTTCAGTCCT	NA	False	NA	10	True	AATAAA	-16	NA	136343008	136367896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_136343162_136344319_136345135_136347147_136347316_136352532_136352623_136360049_136360302_136361450_136361604_136367490
ENSMUSG00000026404.13_136362267_136367896_1	chr1	+	512	2	ISM	ENSMUSG00000026404.13	ENSMUST00000027655.8	2166	8	19258	0	2127	0	3prime_fragment	FALSE	canonical	3	87	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTATTTATTTCAGTCCT	NA	False	NA	10	True	AATAAA	-16	NA	136362266	136367896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_136362373_136367490
ENSMUSG00000026418.17_135730270_135738727_1	chr1	+	1020	7	NIC	ENSMUSG00000026418.17	novel	1038	9	NA	NA	-2525	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	34.6862925215263	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	1046	False	NA	43	True	ATTAAA	-24	NA	135730269	135738727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_135730362_135732790_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
ENSMUSG00000026418.17_135732609_135738727_1	chr1	+	1110	6	ISM	ENSMUSG00000026418.17	ENSMUST00000148201.8	1150	9	5038	0	-186	0	3prime_fragment	FALSE	canonical	3	26	junction_1	26.8730348118704	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	3385	False	NA	43	True	ATTAAA	-24	NA	135732608	135738727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
ENSMUSG00000026418.17_135733059_135737650_1	chr1	+	864	4	ISM	ENSMUSG00000026418.17	ENSMUST00000129217.2	721	5	264	-3	264	3	3prime_fragment	FALSE	canonical	3	46	junction_1	22.4845626053867	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGGTCCTGGAACTGGC	3835	False	NA	NA	False	AGTAAA	-19	NA	135733058	135737650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_135733369_135735258_135735349_135736370_135736548_135737363
ENSMUSG00000026418.17_135733059_135738727_1	chr1	+	1064	5	ISM	ENSMUSG00000026418.17	ENSMUST00000148201.8	1150	9	5488	0	264	0	3prime_fragment	FALSE	canonical	3	46	junction_1	20.1912728672563	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	3835	False	NA	43	True	ATTAAA	-24	NA	135733058	135738727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
ENSMUSG00000026418.17_135733229_135737650_1	chr1	+	694	4	ISM	ENSMUSG00000026418.17	ENSMUST00000129217.2	721	5	434	-3	434	3	3prime_fragment	FALSE	canonical	3	46	junction_1	22.4845626053867	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGGTCCTGGAACTGGC	4005	False	NA	NA	False	AGTAAA	-19	NA	135733228	135737650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_135733369_135735258_135735349_135736370_135736548_135737363
ENSMUSG00000026418.17_135735752_135738727_1	chr1	+	775	4	NNC	ENSMUSG00000026418.17	novel	1105	10	NA	NA	2957	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	40.5983031938802	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	6528	False	NA	43	True	ATTAAA	-24	NA	135735751	135738727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_135735863_135736370_135736548_135737363_135737474_135738350
ENSMUSG00000026418.17_135735999_135737650_1	chr1	+	578	3	NNC	ENSMUSG00000026418.17	novel	1105	10	NA	NA	3204	3	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	44.5	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGGTCCTGGAACTGGC	6775	False	NA	NA	False	AGTAAA	-19	NA	135735998	135737650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_135736113_135736370_135736548_135737363
ENSMUSG00000026418.17_135735999_135738727_1	chr1	+	778	4	NNC	ENSMUSG00000026418.17	novel	1105	10	NA	NA	3204	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	38.7384391356527	100	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	6775	False	NA	43	True	ATTAAA	-24	NA	135735998	135738727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_135736113_135736370_135736548_135737363_135737474_135738350
ENSMUSG00000026421.15_135647479_135679970_1	chr1	+	2148	6	FSM	ENSMUSG00000026421.15	ENSMUST00000097561.9	1828	6	-320	0	-320	0	multi-exon	FALSE	canonical	3	16	junction_1	177.543684765187	2805	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTTCCTGTCTGTCT	NA	False	NA	24	True	AATAAA	-17	NA	135647478	135679970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_135647932_135667137_135667251_135672996_135673166_135674457_135674588_135678302_135678397_135678781
ENSMUSG00000026425.16_131222956_131226120_1	chr1	-	520	3	ISM	ENSMUSG00000026425.16	ENSMUST00000189892.2	1044	6	12683	-1	-2002	0	3prime_fragment	FALSE	canonical	3	29	junction_1	53.5	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTGCCAGATCTCTTG	7549	False	NA	0	True	AATAAA	-26	NA	131226120	131222955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_131223278_131224057_131224205_131226069
ENSMUSG00000026427.17_131080918_131101215_1	chr1	+	2019	15	NNC	ENSMUSG00000026427.17	novel	2009	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	171.640820985485	1188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTATTTCTAATCTAAA	NA	False	NA	41	True	AATAAA	-22	NA	131080917	131101215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088136_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
ENSMUSG00000026427.17_131080918_131101215_2	chr1	+	2000	15	NNC	ENSMUSG00000026427.17	novel	2009	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	175.912489839786	1195	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTATTTCTAATCTAAA	NA	False	NA	41	True	AATAAA	-22	NA	131080917	131101215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092865_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
ENSMUSG00000026429.10_134890329_134901900_1	chr1	+	995	6	NIC	ENSMUSG00000026429.10	novel	1116	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_4	318.147512955861	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGTTTATATGAAACG	NA	False	NA	15	True	AATAAA	-17	NA	134890328	134901900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_134890525_134895464_134895641_134896978_134897049_134898987_134899094_134899843_134899928_134901537
ENSMUSG00000026429.10_134890329_134901900_2	chr1	+	1072	7	NNC	ENSMUSG00000026429.10	novel	1116	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	332.62412052579	3214	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGTTTATATGAAACG	NA	False	NA	15	True	AATAAA	-17	NA	134890328	134901900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_134890525_134895464_134895641_134896978_134897049_134899009_134899094_134899638_134899738_134899843_134899928_134901537
ENSMUSG00000026429.10_134890329_134901900_3	chr1	+	913	7	NNC	ENSMUSG00000026429.10	novel	1116	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	165	junction_1	233.142779333943	2075	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGTTTATATGAAACG	NA	False	NA	15	True	AATAAA	-17	NA	134890328	134901900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_134890348_134895464_134895637_134896978_134897049_134898987_134899094_134899638_134899738_134899843_134899928_134901537
ENSMUSG00000026433.14_131794978_131800625_1	chr1	+	1334	5	FSM	ENSMUSG00000026433.14	ENSMUST00000112386.8	1202	5	16	-148	0	0	multi-exon	FALSE	canonical	3	82	junction_1	6.13901457890434	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGGTTGTGATGCTGGG	NA	False	NA	15	True	ATTAAA	-17	NA	131794977	131800625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
ENSMUSG00000026433.14_131794978_131800625_2	chr1	+	1251	6	NNC	ENSMUSG00000026433.14	novel	1226	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	36.3174888999777	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGGTTGTGATGCTGGG	NA	False	NA	15	True	ATTAAA	-17	NA	131794977	131800625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_131795174_131795256_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
ENSMUSG00000026455.15_134383269_134418611_1	chr1	+	3263	12	FSM	ENSMUSG00000026455.15	ENSMUST00000027725.11	3408	12	0	145	0	0	multi-exon	TRUE	canonical	3	104	junction_1	24.9889231659096	539	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTAAGAGAATTTGTGGG	NA	False	NA	17	True	ATTAAA	-18	NA	134383268	134418611	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_134383404_134386203_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416672_134416860_134417069
ENSMUSG00000026456.19_134333733_134339478_1	chr1	+	1623	9	FSM	ENSMUSG00000026456.19	ENSMUST00000027726.14	1837	9	214	0	0	0	multi-exon	FALSE	canonical	3	291	junction_1	53.3666562565053	979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTGTCGTCGTGTCTGGG	8185	False	NA	43	True	AATAAA	-31	NA	134333732	134339478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
ENSMUSG00000026456.19_134333733_134339478_2	chr1	+	1882	8	NIC	ENSMUSG00000026456.19	novel	1837	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	337	junction_4	39.0227563122351	1095	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTGTCGTCGTGTCTGGG	8185	False	NA	43	True	AATAAA	-31	NA	134333732	134339478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
ENSMUSG00000026457.15_134343209_134359465_1	chr1	+	1406	8	FSM	ENSMUSG00000026457.15	ENSMUST00000027727.15	3123	8	93	1624	0	-1621	multi-exon	FALSE	canonical	3	879	junction_4	75.4485904170407	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGAAGAGTCTGAGTTGT	NA	False	NA	10	True	TTTAAA	-22	NA	134343208	134359465	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_134343324_134350658_134350894_134351695_134351813_134352488_134352661_134353646_134353834_134355819_134356008_134358794_134358989_134359267
ENSMUSG00000026457.15_134343209_134360075_1	chr1	+	2016	8	FSM	ENSMUSG00000026457.15	ENSMUST00000027727.15	3123	8	93	1014	0	-1011	multi-exon	FALSE	canonical	3	879	junction_4	75.4485904170407	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTTGGCATTCAAAGAGTT	NA	False	NA	8	True	AATAAA	-16	NA	134343208	134360075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_134343324_134350658_134350894_134351695_134351813_134352488_134352661_134353646_134353834_134355819_134356008_134358794_134358989_134359267
ENSMUSG00000026466.17_155882527_155911796_1	chr1	-	1690	10	FSM	ENSMUSG00000026466.17	ENSMUST00000097527.10	4234	10	377	2167	0	0	multi-exon	FALSE	canonical	3	47	junction_4	20.1935083078146	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTAATTATCTGTGAT	NA	False	NA	NA	False	AGTAAA	-36	NA	155911796	155882526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_155883456_155889063_155889121_155893256_155893326_155893963_155894006_155898045_155898127_155898894_155898934_155906132_155906178_155907159_155907220_155909471_155909547_155911503
ENSMUSG00000026466.17_155905919_155911796_1	chr1	-	687	4	FSM	ENSMUSG00000026466.17	ENSMUST00000141980.2	784	4	97	0	0	0	multi-exon	FALSE	canonical	3	96	junction_3	11.7284080571728	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACACTTGTCAAGTGTTCT	NA	False	NA	NA	False	AATAAA	-41	NA	155911796	155905918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_155906178_155907159_155907220_155909471_155909547_155911503
ENSMUSG00000026470.15_155069048_155078448_1	chr1	+	882	3	ISM	ENSMUSG00000026470.15	ENSMUST00000195693.6	870	5	5920	-680	-1719	455	3prime_fragment	FALSE	canonical	3	152	junction_2	0.5	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCTGTGTCGGTCTAGCC	6737	False	NA	22	True	AATAAA	-22	NA	155069047	155078448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_155069072_155073086_155073182_155077685
ENSMUSG00000026479.14_152998502_153002980_1	chr1	-	1857	3	FSM	ENSMUSG00000026479.14	ENSMUST00000189005.2	440	3	0	-1417	0	0	multi-exon	FALSE	canonical	3	112	junction_2	14	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGTTTCTGATTTTATT	NA	False	NA	-1	True	AATAAA	-19	NA	153002980	152998501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_153000030_153002561_153002662_153002751
ENSMUSG00000026484.14_151304399_151333912_1	chr1	-	2643	15	NIC	ENSMUSG00000026484.14	novel	817	4	NA	NA	13870	29356	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGCCACCACAGACTGCGC	NA	False	NA	NA	False	NA	NA	NA	151333912	151304398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
ENSMUSG00000026491.14_179626113_179631245_1	chr1	-	1119	2	FSM	ENSMUSG00000026491.14	ENSMUST00000147137.2	746	2	-74	-299	0	293	multi-exon	FALSE	canonical	3	284	junction_1	0	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAACCTCAT	NA	False	NA	NA	False	NA	NA	NA	179631245	179626112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_179626904_179630917
ENSMUSG00000026492.12_179356192_179373832_1	chr1	-	1877	8	FSM	ENSMUSG00000026492.12	ENSMUST00000027769.6	2449	8	0	572	0	305	multi-exon	FALSE	canonical	3	69	junction_1	6.92820323027551	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTACTGCACATGCGCACA	7878	False	NA	NA	False	NA	NA	NA	179373832	179356191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_179356920_179358868_179359030_179359629_179359693_179361197_179361288_179365263_179365413_179369871_179370023_179372462_179372552_179373386
ENSMUSG00000026492.12_179356192_179373832_2	chr1	-	1788	7	NIC	ENSMUSG00000026492.12	novel	2449	8	NA	NA	0	305	combination_of_known_junctions	FALSE	canonical	2	8	junction_6	27.6008252694653	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTACTGCACATGCGCACA	7878	False	NA	NA	False	NA	NA	NA	179373832	179356191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_179356920_179358868_179359030_179359629_179359693_179361197_179361288_179365263_179365413_179369871_179370023_179373386
ENSMUSG00000026492.12_179356497_179373832_2	chr1	-	1572	8	FSM	ENSMUSG00000026492.12	ENSMUST00000027769.6	2449	8	0	877	0	0	multi-exon	FALSE	canonical	3	69	junction_1	6.92820323027551	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACTTTGTTTTAAAGTAC	7878	False	NA	NA	False	AATAAA	-31	NA	179373832	179356496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_179356920_179358868_179359030_179359629_179359693_179361197_179361288_179365263_179365413_179369871_179370023_179372462_179372552_179373386
ENSMUSG00000026495.9_178233650_178309036_1	chr1	+	556	7	FSM	ENSMUSG00000026495.9	ENSMUST00000027775.9	3580	7	-18	3042	0	0	multi-exon	FALSE	canonical	3	53	junction_5	10.1447851956888	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTCAATTTCTAGTTGAA	NA	False	NA	NA	False	ATTAAA	-43	NA	178233649	178309036	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_178233699_178264966_178265052_178283380_178283454_178302446_178302527_178303249_178303293_178303389_178303457_178308877
ENSMUSG00000026495.9_178233650_178309081_1	chr1	+	601	7	FSM	ENSMUSG00000026495.9	ENSMUST00000027775.9	3580	7	-18	2997	0	45	multi-exon	FALSE	canonical	3	53	junction_5	10.1447851956888	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTTCACATTTTATTGT	NA	False	NA	NA	False	NA	NA	NA	178233649	178309081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_178233699_178264966_178265052_178283380_178283454_178302446_178302527_178303249_178303293_178303389_178303457_178308877
ENSMUSG00000026496.12_180396494_180408149_1	chr1	+	774	5	ISM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	0	20670	0	1423	5prime_fragment	FALSE	canonical	3	1772	junction_3	58.6062070091556	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTAAGAAAGGGAAGGACAA	3147	False	NA	NA	False	AAAAAG	-4	NA	180396493	180408149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097
ENSMUSG00000026496.12_180396494_180428565_1	chr1	+	3619	23	FSM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	0	254	0	-252	multi-exon	FALSE	canonical	3	1402	junction_6	226.960257925668	849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGATTTTCTTTTTTATC	3147	False	NA	16	True	AATAAA	-17	NA	180396493	180428565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
ENSMUSG00000026496.12_180421712_180428565_1	chr1	+	1256	8	ISM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	25218	254	2864	-252	3prime_fragment	FALSE	canonical	3	1798	junction_3	193.759687052107	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGATTTTCTTTTTTATC	657	False	NA	16	True	AATAAA	-17	NA	180421711	180428565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
ENSMUSG00000026511.8_181952346_181959241_1	chr1	+	605	3	FSM	ENSMUSG00000026511.8	ENSMUST00000027792.6	1367	3	31	731	0	-129	multi-exon	FALSE	canonical	3	1020	junction_2	65.5	807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGATGTTGGGCAAATATA	NA	False	NA	NA	False	AATAAA	-27	NA	181952345	181959241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_181952541_181956248_181956318_181958900
ENSMUSG00000026511.8_181952346_181959370_1	chr1	+	734	3	FSM	ENSMUSG00000026511.8	ENSMUST00000027792.6	1367	3	31	602	0	0	multi-exon	FALSE	canonical	3	1020	junction_2	65.5	8316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTATGTTTCTTTTGGAG	NA	False	NA	NA	False	AATAAA	-18	NA	181952345	181959370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_181952541_181956248_181956318_181958900
ENSMUSG00000026511.8_181952346_181959370_2	chr1	+	665	2	FSM	ENSMUSG00000026511.8	ENSMUST00000111018.2	823	2	44	114	0	0	multi-exon	FALSE	canonical	3	66	junction_1	0	1346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTATGTTTCTTTTGGAG	NA	False	NA	NA	False	AATAAA	-18	NA	181952345	181959370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_181952541_181958900
ENSMUSG00000026511.8_181952346_181959972_1	chr1	+	1267	2	FSM	ENSMUSG00000026511.8	ENSMUST00000111018.2	823	2	44	-488	0	0	multi-exon	FALSE	canonical	3	66	junction_1	0	2723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTATAGGTTTCTTT	NA	False	NA	26	True	AATAAA	-34	NA	181952345	181959972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_181952541_181958900
ENSMUSG00000026516.9_180920535_180971769_1	chr1	-	3560	23	FSM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	0	5832	0	289	multi-exon	TRUE	canonical	3	480	junction_18	71.7805568876937	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCCATGCCAGAAAAGTCC	NA	False	NA	-19	True	GATAAA	-39	NA	180971769	180920534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_180921475_180922548_180922620_180924700_180924790_180926691_180926769_180929093_180929201_180932636_180932737_180934424_180934545_180936724_180936788_180939852_180939958_180941647_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
ENSMUSG00000026516.9_180941541_180971769_1	chr1	-	1995	14	ISM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	0	26838	0	-17994	5prime_fragment	FALSE	canonical	3	480	junction_9	88.1404876440457	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTATGTGTATGAGTG	NA	False	NA	NA	False	ATTAAA	-15	NA	180971769	180941540	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
ENSMUSG00000026516.9_180958357_180971769_1	chr1	-	788	7	ISM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	0	43654	0	5362	5prime_fragment	FALSE	canonical	3	480	junction_2	118.928082843746	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAGAATCTTCAAGAAGTA	NA	False	NA	NA	False	AAGAAA	-41	NA	180971769	180958356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
ENSMUSG00000026519.17_180792643_180793478_1	chr1	+	652	3	Genic_Genomic	ENSMUSG00000026519.17	novel	3306	23	NA	NA	5011	5072	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAGAAGCTTGTGAACAAA	NA	False	NA	NA	False	NA	NA	NA	180792642	180793478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_180792928_180793010_180793192_180793292
ENSMUSG00000026520.9_180731858_180732786_1	chr1	+	716	2	ISM	ENSMUSG00000026520.9	ENSMUST00000194026.2	1039	3	-16	1398	0	-1398	5prime_fragment	FALSE	canonical	3	1107	junction_1	0	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCTTTTTGTTAGTCTGC	16	False	NA	NA	False	NA	NA	NA	180731857	180732786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_180732096_180732308
ENSMUSG00000026520.9_180731858_180735518_1	chr1	+	1445	7	FSM	ENSMUSG00000026520.9	ENSMUST00000027802.9	1580	7	0	135	0	-134	multi-exon	FALSE	canonical	3	1025	junction_3	51.6120679255884	1928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGCCTGTGTCTTGGTGTT	16	False	NA	8	True	ATTAAA	-11	NA	180731857	180735518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180732096_180732308_180732380_180733438_180733619_180733727_180733950_180734159_180734253_180734354_180734519_180735041
ENSMUSG00000026526.15_175428942_175453139_1	chr1	-	1567	10	NIC	ENSMUSG00000026526.15	novel	2636	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	275.591081939246	6044	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTTTAAAATTTAATTTA	854	False	NA	-14	True	AATAAA	-39	NA	175453139	175428941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_175429133_175431503_175431658_175433620_175433749_175435382_175435587_175437202_175437369_175439712_175439896_175442302_175442480_175444094_175444206_175446616_175446747_175453016
ENSMUSG00000026526.15_175428942_175453201_1	chr1	-	1634	10	FSM	ENSMUSG00000026526.15	ENSMUST00000027810.14	2636	10	0	1002	0	0	multi-exon	FALSE	canonical	3	699	junction_3	99.2506491566916	6086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTTTAAAATTTAATTTA	792	False	NA	-14	True	AATAAA	-39	NA	175453201	175428941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_175429133_175431503_175431658_175433620_175433749_175435382_175435587_175437202_175437369_175439712_175439896_175442302_175442480_175444094_175444206_175446616_175446752_175453016
ENSMUSG00000026544.7_172458945_172460581_1	chr1	-	848	2	FSM	ENSMUSG00000026544.7	ENSMUST00000027826.7	1410	2	-52	614	-52	-614	multi-exon	FALSE	canonical	1	2	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATACA	-34	NA	172460581	172458944	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_172459394_172460182
ENSMUSG00000026547.16_172327812_172334947_1	chr1	+	1383	5	NNC	ENSMUSG00000026547.16	novel	1586	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	483.197940806871	3701	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTGTTTCTAGGGCC	NA	False	NA	29	True	AATAAA	-26	NA	172327811	172334947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_172327900_172332686_172332895_172333327_172333503_172333757_172333856_172334133
ENSMUSG00000026547.16_172327812_172334947_2	chr1	+	1388	5	FSM	ENSMUSG00000026547.16	ENSMUST00000111230.8	1586	5	198	0	0	0	multi-exon	FALSE	canonical	3	984	junction_4	118.904373342615	3754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTGTTTCTAGGGCC	NA	False	NA	29	True	AATAAA	-26	NA	172327811	172334947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133
ENSMUSG00000026547.16_172327812_172334947_3	chr1	+	1366	6	NNC	ENSMUSG00000026547.16	novel	1586	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	448.58916616432	3804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTGTTTCTAGGGCC	NA	False	NA	29	True	AATAAA	-26	NA	172327811	172334947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133_172334455_172334476
ENSMUSG00000026548.5_172302925_172305976_1	chr1	+	1147	4	FSM	ENSMUSG00000026548.5	ENSMUST00000027830.5	1313	4	0	166	0	-166	multi-exon	FALSE	canonical	1	3	junction_3	1.24721912892465	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCACCGTGCTTGATGC	NA	False	NA	NA	False	AATAAA	-19	NA	172302924	172305976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_172303107_172303699_172304042_172304772_172305046_172305626
ENSMUSG00000026553.18_171910372_171920254_1	chr1	+	934	6	ISM	ENSMUSG00000026553.18	ENSMUST00000027833.12	4351	33	-27	29643	0	-873	5prime_fragment	FALSE	canonical	3	862	junction_4	74.9415772452115	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAATTGAGAC	3040	False	NA	NA	False	NA	NA	NA	171910371	171920254	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811
ENSMUSG00000026554.16_171975685_172023959_1	chr1	+	3639	14	FSM	ENSMUSG00000026554.16	ENSMUST00000191689.6	2754	14	0	-885	0	3	multi-exon	FALSE	canonical	3	418	junction_1	55.9704063816991	1348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTGTGGTATGTGGTC	NA	False	NA	19	True	AGTAAA	-19	NA	171975684	172023959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
ENSMUSG00000026554.16_172024295_172034278_1	chr1	+	2408	4	NIC	ENSMUSG00000026554.16	novel	571	5	NA	NA	9347	9706	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTCCGCCCGTGGAGC	NA	False	NA	NA	False	NA	NA	NA	172024294	172034278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_172026258_172026677_172026834_172027974_172028149_172034163
ENSMUSG00000026556.16_171831996_171854862_1	chr1	-	2229	8	FSM	ENSMUSG00000026556.16	ENSMUST00000027837.13	5698	8	0	3469	0	0	multi-exon	FALSE	canonical	3	70	junction_3	8.90768986749708	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTCTTCCTCAGTTTTT	NA	False	NA	30	True	NA	NA	NA	171854862	171831995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
ENSMUSG00000026558.14_167053643_167111526_1	chr1	-	1115	7	NNC	ENSMUSG00000026558.14	novel	4731	7	NA	NA	644	153	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_6	363.244025721308	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTGTGTAACTGTACA	NA	False	NA	-19	True	TATAAA	-38	NA	167111526	167053642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057_167065218_167111406
ENSMUSG00000026558.14_167053648_167112458_1	chr1	-	1104	7	FSM	ENSMUSG00000026558.14	ENSMUST00000053686.9	4731	7	431	3196	-5	148	multi-exon	FALSE	canonical	3	994	junction_5	17.625738755203	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCTATTTTTGTGTAACT	NA	False	NA	-24	True	TATAAA	-33	NA	167112458	167053647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057_167065218_167112344
ENSMUSG00000026558.14_167053648_167112630_1	chr1	-	1276	7	FSM	ENSMUSG00000026558.14	ENSMUST00000053686.9	4731	7	259	3196	-177	148	multi-exon	FALSE	canonical	3	994	junction_5	17.625738755203	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCTATTTTTGTGTAACT	NA	False	NA	-24	True	TATAAA	-33	NA	167112630	167053647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057_167065218_167112344
ENSMUSG00000026563.14_166206908_166221190_1	chr1	+	1973	8	FSM	ENSMUSG00000026563.14	ENSMUST00000027846.8	2215	8	242	0	0	0	multi-exon	FALSE	canonical	3	160	junction_4	12.2357789173508	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTTCCTGTTTATTCAA	NA	False	NA	15	True	AATAAA	-15	NA	166206907	166221190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_166207046_166209695_166209788_166209965_166210032_166214234_166214333_166216130_166216341_166217404_166217557_166219391_166219555_166220136
ENSMUSG00000026568.7_165288793_165308689_1	chr1	+	733	4	NIC	ENSMUSG00000026568.7	novel	1025	5	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	212.816561594461	2425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTCTTTACATTTGCCT	NA	False	NA	13	True	AATAAA	-18	NA	165288792	165308689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_165289081_165305759_165305875_165307035_165307148_165308471
ENSMUSG00000026568.7_165288793_165308689_2	chr1	+	744	5	FSM	ENSMUSG00000026568.7	ENSMUST00000027853.6	1025	5	187	94	0	1	multi-exon	FALSE	canonical	3	408	junction_4	28.8704000665041	3330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTCTTTACATTTGCCT	NA	False	NA	13	True	AATAAA	-18	NA	165288792	165308689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_165289081_165302522_165302564_165305789_165305875_165307035_165307148_165308471
ENSMUSG00000026568.7_165288793_165308785_1	chr1	+	840	5	FSM	ENSMUSG00000026568.7	ENSMUST00000027853.6	1025	5	187	-2	0	2	multi-exon	FALSE	canonical	3	408	junction_4	28.8704000665041	3381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCCCCACTTCATCTTTC	NA	False	NA	109	True	AATAAA	-18	NA	165288792	165308785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_165289081_165302522_165302564_165305789_165305875_165307035_165307148_165308471
ENSMUSG00000026568.7_165288934_165308689_1	chr1	+	603	5	FSM	ENSMUSG00000026568.7	ENSMUST00000027853.6	1025	5	328	94	0	1	multi-exon	FALSE	canonical	3	408	junction_4	28.8704000665041	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTCTTTACATTTGCCT	NA	False	NA	13	True	AATAAA	-18	NA	165288933	165308689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_165289081_165302522_165302564_165305789_165305875_165307035_165307148_165308471
ENSMUSG00000026575.16_164200838_164264866_1	chr1	+	558	4	NIC	ENSMUSG00000026575.16	novel	687	6	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	63.693711533313	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTGACTTTGGTTTTATT	7384	False	NA	NA	False	AATAAA	-17	NA	164200837	164264866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_164200904_164213268_164213371_164230538_164230647_164264584
ENSMUSG00000026576.13_164205033_164264866_1	chr1	-	1345	6	NNC	ENSMUSG00000026576.13	novel	2580	6	NA	NA	6422	59645	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	245	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACTCTGGTTTTGAGTTG	NA	False	NA	NA	False	NA	NA	NA	164264866	164205032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_164205752_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
ENSMUSG00000026577.14_164118740_164134849_1	chr1	-	2439	7	FSM	ENSMUSG00000026577.14	ENSMUST00000120447.8	2430	7	209	-218	-8	218	multi-exon	FALSE	canonical	3	158	junction_1	15.0738920727933	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTGCCCTTTCCTTTCA	NA	False	NA	-19	True	AATAAA	-18	NA	164134849	164118739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715
ENSMUSG00000026577.14_164118958_164134849_1	chr1	-	2221	7	FSM	ENSMUSG00000026577.14	ENSMUST00000120447.8	2430	7	209	0	-8	0	multi-exon	FALSE	canonical	3	158	junction_1	15.0738920727933	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATAAGGTGCTCATTTGT	NA	False	NA	-5	True	ATTAAA	-16	NA	164134849	164118957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715
ENSMUSG00000026577.14_164119699_164134849_1	chr1	-	1480	7	FSM	ENSMUSG00000026577.14	ENSMUST00000120447.8	2430	7	209	741	-8	0	multi-exon	FALSE	canonical	3	158	junction_1	15.0738920727933	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACATACCCATGAAGCTA	NA	False	NA	-24	True	AATAAA	-19	NA	164134849	164119698	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715
ENSMUSG00000026584.15_163781575_163822365_1	chr1	+	2927	24	NIC	ENSMUSG00000026584.15	novel	3718	14	NA	NA	2793	39670	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	341	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGAGCTCCGCCCCCACC	1736	False	NA	NA	False	NA	NA	NA	163781574	163822365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_163781909_163782905_163783026_163784396_163784478_163785061_163785167_163786856_163786971_163788145_163788242_163789532_163789656_163792038_163792225_163792303_163792394_163793976_163794029_163794642_163794726_163795722_163795910_163799415_163799531_163799775_163799922_163804312_163804378_163805648_163805730_163810233_163810373_163811892_163811978_163813573_163813737_163814455_163814597_163815174_163815280_163817273_163817363_163818288_163818329_163822178
ENSMUSG00000026585.14_163607293_163621672_1	chr1	+	466	3	ISM	ENSMUSG00000026585.14	ENSMUST00000077642.12	4012	21	141	123006	141	-123006	5prime_fragment	FALSE	canonical	3	150	junction_2	5	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGCAGAAGGAGTCTGCA	NA	False	NA	14	True	NA	NA	NA	163607292	163621672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_163607472_163610553_163610686_163621517
ENSMUSG00000026585.14_163710952_163743497_1	chr1	+	494	3	ISM	ENSMUSG00000026585.14	ENSMUST00000027877.7	3946	20	103800	1181	103800	-1181	3prime_fragment	FALSE	canonical	3	171	junction_2	12	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGCTGTGTTGCTTATTT	NA	False	NA	NA	False	NA	NA	NA	163710951	163743497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_163711142_163715774_163715875_163743293
ENSMUSG00000026585.14_163710952_163744678_1	chr1	+	1675	3	ISM	ENSMUSG00000026585.14	ENSMUST00000027877.7	3946	20	103800	0	103800	0	3prime_fragment	FALSE	canonical	3	171	junction_2	12	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAACTCTCATTTTTATG	NA	False	NA	18	True	ATTAAA	-25	NA	163710951	163744678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_163711142_163715774_163715875_163743293
ENSMUSG00000026594.15_156636400_156767163_1	chr1	-	2295	20	FSM	ENSMUSG00000026594.15	ENSMUST00000063199.13	2947	20	-62	714	0	0	multi-exon	FALSE	canonical	3	93	junction_5	55.0008310186526	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTTTAACTTTGTACT	NA	False	NA	-6	True	AATAAA	-16	NA	156767163	156636399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
ENSMUSG00000026594.15_156636400_156767163_2	chr1	-	2217	19	FSM	ENSMUSG00000026594.15	ENSMUST00000027886.14	4237	19	-50	2070	0	0	multi-exon	FALSE	canonical	3	179	junction_5	32.038605185342	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTTTAACTTTGTACT	NA	False	NA	-6	True	AATAAA	-16	NA	156767163	156636399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
ENSMUSG00000026600.13_156257363_156301844_1	chr1	-	3046	16	FSM	ENSMUSG00000026600.13	ENSMUST00000189661.7	8371	16	57	5268	-10	0	multi-exon	FALSE	canonical	2	51	junction_13	9.26258903091115	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACATGTACTCATATGT	1756	False	NA	-6	True	AATAAA	-20	NA	156301844	156257362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_156258686_156259773_156259920_156260416_156260553_156261722_156261822_156263362_156263461_156265273_156265404_156266857_156266904_156267270_156267353_156268076_156268156_156268798_156269082_156269950_156270059_156272124_156272185_156274110_156274263_156285515_156285575_156294250_156294369_156301717
ENSMUSG00000026615.15_185095255_185106653_1	chr1	+	1007	6	ISM	ENSMUSG00000026615.15	ENSMUST00000193788.6	3034	7	-74	2508	0	6	5prime_fragment	FALSE	canonical	3	2037	junction_4	274.301002550118	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGTTTTGCTTATACTT	NA	False	NA	NA	False	AATAAA	-19	NA	185095254	185106653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314
ENSMUSG00000026615.15_185095381_185160557_1	chr1	+	4766	32	FSM	ENSMUSG00000026615.15	ENSMUST00000046514.13	4906	32	140	0	0	0	multi-exon	FALSE	canonical	3	1945	junction_14	331.30791485156	2470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTTGGTTCATCCTGCA	NA	False	NA	22	True	AATAAA	-24	NA	185095380	185160557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
ENSMUSG00000026615.15_185133602_185142403_1	chr1	+	783	4	ISM	ENSMUSG00000026615.15	ENSMUST00000046514.13	4906	32	38361	18154	1747	7	internal_fragment	FALSE	canonical	3	2638	junction_2	105.925550374885	928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAAATCTTGCCGAATG	NA	False	NA	NA	False	NA	NA	NA	185133601	185142403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_185133866_185139157_185139392_185139687_185139951_185142381
ENSMUSG00000026615.15_185133824_185142403_1	chr1	+	561	4	ISM	ENSMUSG00000026615.15	ENSMUST00000046514.13	4906	32	38583	18154	1969	7	internal_fragment	FALSE	canonical	3	2638	junction_2	105.925550374885	698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAAATCTTGCCGAATG	NA	False	NA	NA	False	NA	NA	NA	185133823	185142403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_185133866_185139157_185139392_185139687_185139951_185142381
ENSMUSG00000026617.17_185064377_185089974_1	chr1	+	2145	10	NNC	ENSMUSG00000026617.17	novel	2200	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	86.6005445767384	286	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTGCCTTTATTCCTTC	NA	False	NA	NA	False	ATTAAA	-21	NA	185064376	185089974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674_185089201_185089224
ENSMUSG00000026617.17_185064377_185089974_2	chr1	+	2194	11	NNC	ENSMUSG00000026617.17	novel	1226	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	89.3647022039463	294	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTGCCTTTATTCCTTC	NA	False	NA	NA	False	ATTAAA	-21	NA	185064376	185089974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185082033_185082079_185084378_185084577_185086153_185086260_185088674_185089201_185089220
ENSMUSG00000026618.12_185018898_185021683_1	chr1	-	770	3	ISM	ENSMUSG00000026618.12	ENSMUST00000027921.11	5471	23	39910	1975	-1204	-1132	3prime_fragment	FALSE	canonical	3	342	junction_2	3.5	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGCTCTATGATATCTG	NA	False	NA	-1	True	ATTAAA	-18	NA	185021683	185018897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_185019389_185020236_185020382_185021549
ENSMUSG00000026618.12_185018898_185061593_1	chr1	-	3496	23	FSM	ENSMUSG00000026618.12	ENSMUST00000027921.11	5471	23	0	1975	0	-1132	multi-exon	TRUE	canonical	3	288	junction_20	32.2887284275964	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGCTCTATGATATCTG	NA	False	NA	-1	True	ATTAAA	-18	NA	185061593	185018897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_185019389_185020236_185020382_185021549_185021741_185022682_185022829_185023515_185023623_185026940_185027073_185027751_185027878_185028607_185028711_185029669_185029779_185034904_185034999_185035495_185035599_185048090_185048252_185050003_185050156_185050760_185050852_185053033_185053204_185054596_185054713_185055017_185055109_185055189_185055300_185055382_185055433_185055863_185056013_185057699_185057860_185059816_185059940_185061217
ENSMUSG00000026622.16_191553622_191554812_1	chr1	+	659	3	ISM	ENSMUSG00000026622.16	ENSMUST00000126446.8	2044	6	0	5592	0	-3125	5prime_fragment	FALSE	canonical	3	453	junction_1	30	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTTGGCACACCCTAT	NA	False	NA	NA	False	ATTAAA	-24	NA	191553621	191554812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_191553854_191554258_191554477_191554603
ENSMUSG00000026627.8_191058109_191082398_1	chr1	+	1533	8	FSM	ENSMUSG00000026627.8	ENSMUST00000027940.6	2246	8	0	713	0	-713	multi-exon	TRUE	canonical	3	75	junction_7	21.6248156769306	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGACTTTTTTGTTTTT	NA	False	NA	7	True	NA	NA	NA	191058108	191082398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_191058274_191060379_191060477_191070978_191071189_191072923_191073076_191077173_191077317_191078956_191079102_191080564_191080673_191081885
ENSMUSG00000026632.18_190790096_190795101_1	chr1	-	422	5	NIC	ENSMUSG00000026632.18	novel	342	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	15.9216833280907	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAATGCATTGGTATGCA	NA	False	NA	NA	False	NA	NA	NA	190795101	190790095	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_190790222_190791023_190791109_190792309_190792384_190793421_190793455_190794997
ENSMUSG00000026634.17_190661048_190677979_1	chr1	+	2321	9	NIC	ENSMUSG00000026634.17	novel	3343	8	NA	NA	0	-1180	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	46.1652940530005	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGGTCAA	NA	False	NA	NA	False	NA	NA	NA	190661047	190677979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_190661102_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
ENSMUSG00000026641.14_171238881_171246327_1	chr1	+	1753	10	FSM	ENSMUSG00000026641.14	ENSMUST00000001284.13	1115	10	0	-638	0	2	multi-exon	FALSE	canonical	3	42	junction_4	49.4805111903093	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTCCTCCTTT	6737	False	NA	65	True	GATAAA	-17	NA	171238880	171246327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243368_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
ENSMUSG00000026641.14_171238881_171246327_2	chr1	+	1784	10	FSM	ENSMUSG00000026641.14	ENSMUST00000161241.8	2167	10	0	383	0	2	multi-exon	FALSE	canonical	3	185	junction_1	10.3363197596069	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTCCTCCTTT	6737	False	NA	65	True	GATAAA	-17	NA	171238880	171246327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
ENSMUSG00000026643.17_3285318_3327235_1	chr2	+	1713	14	FSM	ENSMUSG00000026643.17	ENSMUST00000081932.13	4461	14	69	2679	0	0	multi-exon	TRUE	canonical	3	230	junction_10	26.4695873268632	696	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGTAGTTGTTAACAAT	1056	False	NA	10	True	AATAAA	-19	NA	3285317	3327235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_3285444_3305848_3305985_3306433_3306477_3308019_3308070_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
ENSMUSG00000026648.19_3425202_3448508_1	chr2	+	1423	12	ISM	ENSMUSG00000026648.19	ENSMUST00000102988.10	2469	14	15	6621	0	5265	5prime_fragment	FALSE	canonical	3	20	junction_5	4.48136637958772	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCAATGGATATTCATTC	1036	False	NA	NA	False	NA	NA	NA	3425201	3448508	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3437474_3437531_3438025_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110
ENSMUSG00000026649.15_170941558_170954519_1	chr1	+	964	6	FSM	ENSMUSG00000026649.15	ENSMUST00000151340.8	793	6	0	-171	0	8	multi-exon	FALSE	canonical	0	0	junction_1	4.40908153700972	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGACCTGGGTTTTCTCC	NA	False	NA	NA	False	AATAAA	-20	NA	170941557	170954519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_170941666_170950614_170950763_170952602_170952666_170952838_170952920_170953602_170953780_170954132
ENSMUSG00000026656.16_170788127_170790975_1	chr1	-	663	3	ISM	ENSMUSG00000026656.16	ENSMUST00000159969.8	1578	10	13141	-211	-1776	0	3prime_fragment	FALSE	canonical	2	8	junction_2	23.5	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTTCTATTTACTTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	170790975	170788126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_170788670_170788764_170788803_170790893
ENSMUSG00000026656.16_170788127_170796226_1	chr1	-	1637	5	ISM	ENSMUSG00000026656.16	ENSMUST00000081103.12	1462	7	7470	0	-7027	0	3prime_fragment	FALSE	canonical	3	38	junction_2	18.6346451535842	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTTCTATTTACTTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	170796226	170788126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_170788670_170788764_170788803_170793270_170793394_170794014_170794270_170795548
ENSMUSG00000026659.14_170701757_170713026_1	chr1	-	1298	6	NNC	ENSMUSG00000026659.14	novel	1374	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	137.74236820964	1284	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTGTGTTAGATGGTTT	NA	False	NA	-2	True	ATTAAA	-16	NA	170713026	170701756	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_170702140_170707228_170707416_170707698_170707796_170708147_170708261_170708483_170708611_170712635
ENSMUSG00000026659.14_170701757_170713026_2	chr1	-	1187	6	NNC	ENSMUSG00000026659.14	novel	1374	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	126.07711925643	127	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTGTGTTAGATGGTTT	NA	False	NA	-2	True	ATTAAA	-16	NA	170713026	170701756	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_170702140_170707228_170707312_170707698_170707796_170708141_170708261_170708483_170708598_170712635
ENSMUSG00000026659.14_170701757_170713026_3	chr1	-	1104	5	FSM	ENSMUSG00000026659.14	ENSMUST00000171447.8	846	5	-258	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	122.748727080976	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTGTGTTAGATGGTTT	NA	False	NA	-2	True	ATTAAA	-16	NA	170713026	170701756	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_170702140_170707698_170707796_170708141_170708261_170708483_170708598_170712635
ENSMUSG00000026659.14_170701757_170713026_4	chr1	-	1283	6	NNC	ENSMUSG00000026659.14	novel	1374	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_5	128.631877853042	429	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTGTGTTAGATGGTTT	NA	False	NA	-2	True	ATTAAA	-16	NA	170713026	170701756	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708590_170712635
ENSMUSG00000026662.14_4886618_4911691_1	chr2	+	1399	9	FSM	ENSMUSG00000026662.14	ENSMUST00000027973.14	5319	9	243	3677	243	-1257	multi-exon	FALSE	canonical	3	382	junction_1	74.2242169039189	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATTGTGTCTACACATC	4335	False	NA	20	True	ATTAAA	-20	NA	4886617	4911691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_4886672_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
ENSMUSG00000026662.14_4886618_4911691_2	chr2	+	1295	8	NIC	ENSMUSG00000026662.14	novel	5319	9	NA	NA	243	-1257	combination_of_known_junctions	FALSE	canonical	3	91	junction_2	174.392707205693	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATTGTGTCTACACATC	4335	False	NA	20	True	ATTAAA	-20	NA	4886617	4911691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_4886672_4889142_4889417_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
ENSMUSG00000026662.14_4886618_4912651_1	chr2	+	2359	9	FSM	ENSMUSG00000026662.14	ENSMUST00000027973.14	5319	9	243	2717	243	-297	multi-exon	FALSE	canonical	3	382	junction_1	74.2242169039189	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTCTTGTATAATCAGAT	4335	False	NA	20	True	AATAAA	-17	NA	4886617	4912651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_4886672_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
ENSMUSG00000026662.14_4886618_4913311_1	chr2	+	3019	9	FSM	ENSMUSG00000026662.14	ENSMUST00000027973.14	5319	9	243	2057	243	363	multi-exon	FALSE	canonical	3	382	junction_1	74.2242169039189	798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTTGGACTTGCTTCTA	4335	False	NA	23	True	AATAAA	-32	NA	4886617	4913311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_4886672_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
ENSMUSG00000026663.7_170669133_170695341_1	chr1	-	638	5	ISM	ENSMUSG00000026663.7	ENSMUST00000027974.7	7246	16	-1	136890	-1	-49277	5prime_fragment	FALSE	canonical	3	61	junction_2	5.2618912949623	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCTATTTATTTTATTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	170695341	170669132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_170669382_170676685_170676787_170680473_170680562_170682681_170682759_170695218
ENSMUSG00000026664.8_4923891_4943541_1	chr2	+	1372	9	NNC	ENSMUSG00000026664.8	novel	1438	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	145.37231295883	3509	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCATATTAAGTCAATTTCT	1052	False	NA	9	True	AATAAA	-20	NA	4923890	4943541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_4923956_4927638_4927698_4930408_4930520_4932160_4932330_4933481_4933564_4935528_4935706_4940779_4940930_4942486_4942622_4943117
ENSMUSG00000026672.12_5025453_5051010_1	chr2	-	2095	11	ISM	ENSMUSG00000026672.12	ENSMUST00000114996.8	2614	14	17846	0	-9002	0	3prime_fragment	FALSE	canonical	3	118	junction_4	15.7800506970035	508	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTTATCTGATTTATT	NA	False	NA	0	True	AGTAAA	-17	NA	5051010	5025452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797
ENSMUSG00000026675.13_169783070_169796810_1	chr1	-	1424	9	NNC	ENSMUSG00000026675.13	novel	1446	8	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	21.8885672212687	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACTTCTCTGTGATCTT	NA	False	NA	NA	False	AATAAA	-24	NA	169796810	169783069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_169783137_169783158_169783603_169786991_169787049_169787255_169787361_169788573_169788769_169791959_169792075_169793255_169793349_169794798_169795003_169796666
ENSMUSG00000026683.15_169337686_169358980_1	chr1	-	1195	10	ISM	ENSMUSG00000026683.15	ENSMUST00000111368.8	2405	14	53	12183	0	0	5prime_fragment	FALSE	canonical	3	65	junction_9	38.1284379142101	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAAAGTGTGGGTTTTT	NA	False	NA	-3	True	AATACA	-15	NA	169358980	169337685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169358890
ENSMUSG00000026688.6_167199950_167221410_1	chr1	-	675	6	NNC	ENSMUSG00000026688.6	novel	1097	6	NA	NA	0	-415	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	167.315988476894	1796	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGCCTGCATCTCTTT	4956	False	NA	0	True	AATAAA	-31	NA	167221410	167199949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_167200212_167201361_167201435_167203020_167203079_167204829_167204904_167205860_167205978_167221319
ENSMUSG00000026688.6_167199950_167221410_2	chr1	-	670	6	NNC	ENSMUSG00000026688.6	novel	1097	6	NA	NA	0	-415	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	166.260759050354	1051	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGCCTGCATCTCTTT	4956	False	NA	0	True	AATAAA	-31	NA	167221410	167199949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_167200212_167201361_167201435_167203032_167203079_167204829_167204904_167205860_167205985_167221319
ENSMUSG00000026688.6_167199950_167221410_3	chr1	-	675	6	NNC	ENSMUSG00000026688.6	novel	1097	6	NA	NA	0	-415	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	169.376503683362	1565	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGCCTGCATCTCTTT	4956	False	NA	0	True	AATAAA	-31	NA	167221410	167199949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_167200205_167201361_167201435_167203020_167203079_167204829_167204904_167205860_167205985_167221319
ENSMUSG00000026688.6_167199950_167221410_4	chr1	-	675	6	NNC	ENSMUSG00000026688.6	novel	1097	6	NA	NA	0	-415	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_2	164.279761382831	1736	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGCCTGCATCTCTTT	4956	False	NA	0	True	AATAAA	-31	NA	167221410	167199949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_167200212_167201361_167201428_167203020_167203079_167204829_167204904_167205860_167205985_167221319
ENSMUSG00000026688.6_167199950_167221410_5	chr1	-	679	6	NNC	ENSMUSG00000026688.6	novel	1097	6	NA	NA	0	-415	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	164.005609660158	2717	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGCCTGCATCTCTTT	4956	False	NA	0	True	AATAAA	-31	NA	167221410	167199949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_167200212_167201361_167201435_167203020_167203072_167204825_167204904_167205860_167205985_167221319
ENSMUSG00000026688.6_167199950_167221410_6	chr1	-	673	6	NNC	ENSMUSG00000026688.6	novel	1097	6	NA	NA	0	-415	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	195.490562432052	1232	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGCCTGCATCTCTTT	4956	False	NA	0	True	AATAAA	-31	NA	167221410	167199949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_167200212_167201361_167201435_167203020_167203072_167204825_167204904_167205866_167205985_167221319
ENSMUSG00000026694.20_162361248_162376098_1	chr1	-	2967	8	FSM	ENSMUSG00000026694.20	ENSMUST00000028017.16	4541	8	22	1552	0	0	multi-exon	FALSE	canonical	3	51	junction_6	17.6704526812185	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAAAGTTGGTTTATCT	NA	False	NA	-11	True	NA	NA	NA	162376098	162361247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162371754_162371955_162373336_162374097_162375672
ENSMUSG00000026696.16_162398196_162422729_1	chr1	+	1219	8	FSM	ENSMUSG00000026696.16	ENSMUST00000135241.8	1461	8	37	205	0	-205	multi-exon	FALSE	canonical	3	271	junction_7	26.2336440784092	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTGGTAATTTTTTGGTC	NA	False	NA	-89	True	AGTAAA	-24	NA	162398195	162422729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387_162409439_162415764_162415866_162417033_162417114_162420194_162420247_162422114
ENSMUSG00000026698.9_161796797_161799193_1	chr1	+	1450	2	FSM	ENSMUSG00000026698.9	ENSMUST00000028021.7	2196	2	40	706	0	-706	multi-exon	FALSE	canonical	3	13	junction_1	0	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCATTGTCTAGTATTTTA	NA	False	NA	11	True	ATTAAA	-14	NA	161796796	161799193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_161796849_161797795
ENSMUSG00000026698.9_161796797_161799193_2	chr1	+	1437	2	FSM	ENSMUSG00000026698.9	ENSMUST00000111594.3	3290	2	42	1811	0	-706	multi-exon	FALSE	canonical	3	13	junction_1	0	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCATTGTCTAGTATTTTA	NA	False	NA	11	True	ATTAAA	-14	NA	161796796	161799193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_161796849_161797808
ENSMUSG00000026698.9_161796871_161799193_1	chr1	+	1466	2	NIC	ENSMUSG00000026698.9	novel	704	2	NA	NA	0	-706	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCATTGTCTAGTATTTTA	NA	False	NA	11	True	ATTAAA	-14	NA	161796870	161799193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_161796939_161797795
ENSMUSG00000026701.16_161068585_161078736_2	chr1	-	1459	5	FSM	ENSMUSG00000026701.16	ENSMUST00000156678.8	913	5	3	-549	0	0	multi-exon	FALSE	canonical	2	3	junction_4	765.536209137099	11628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAACCGTTGTCATGTTT	NA	False	NA	-11	True	AATAAA	-10	NA	161078736	161068584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078563
ENSMUSG00000026701.16_161068585_161078736_3	chr1	-	1424	5	NNC	ENSMUSG00000026701.16	novel	959	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	755.494995019821	11905	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAACCGTTGTCATGTTT	NA	False	NA	-11	True	AATAAA	-10	NA	161078736	161068584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_161069413_161071144_161071292_161071765_161071913_161074826_161074984_161078591
ENSMUSG00000026701.16_161069134_161078736_1	chr1	-	875	5	NNC	ENSMUSG00000026701.16	novel	959	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	755.494995019821	3303	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATGGCACCAAAACCTT	NA	False	NA	-20	True	ATTAAA	-2	NA	161078736	161069133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_161069413_161071144_161071292_161071765_161071913_161074826_161074984_161078591
ENSMUSG00000026701.16_161069134_161078736_2	chr1	-	867	5	NNC	ENSMUSG00000026701.16	novel	959	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	744.110374877276	1797	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATGGCACCAAAACCTT	NA	False	NA	-20	True	ATTAAA	-2	NA	161078736	161069133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_161069420_161071144_161071292_161071780_161071913_161074826_161074984_161078591
ENSMUSG00000026701.16_161069134_161078736_3	chr1	-	725	4	FSM	ENSMUSG00000026701.16	ENSMUST00000192639.6	1294	4	20	549	0	0	multi-exon	FALSE	canonical	3	42	junction_3	831.771736849854	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATGGCACCAAAACCTT	NA	False	NA	-20	True	ATTAAA	-2	NA	161078736	161069133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161078591
ENSMUSG00000026701.16_161069378_161078736_1	chr1	-	638	5	FSM	ENSMUSG00000026701.16	ENSMUST00000071718.12	2387	5	53	1696	0	0	multi-exon	FALSE	canonical	3	1689	junction_3	62.8823305865805	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCAAACAATGTTTCCC	NA	False	NA	NA	False	NA	NA	NA	161078736	161069377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078591
ENSMUSG00000026705.17_160926102_160959012_1	chr1	-	2026	8	FSM	ENSMUSG00000026705.17	ENSMUST00000148952.8	4182	8	69	2087	0	1587	multi-exon	FALSE	canonical	3	82	junction_4	11.5387545750335	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGTATGTGTGTGACTT	NA	False	NA	NA	False	NA	NA	NA	160959012	160926101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
ENSMUSG00000026708.17_160898520_160913896_1	chr1	+	1289	3	NIC	ENSMUSG00000026708.17	novel	1756	6	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	51	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTTTCCAATTGAAGTT	NA	False	NA	8	True	AATAAA	-14	NA	160898519	160913896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_160898927_160910477_160911021_160913557
ENSMUSG00000026708.17_160898520_160913896_2	chr1	+	1715	5	FSM	ENSMUSG00000026708.17	ENSMUST00000111620.10	1910	5	183	12	0	2	multi-exon	FALSE	canonical	3	79	junction_2	18.1710621593786	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTTTCCAATTGAAGTT	NA	False	NA	8	True	AATAAA	-14	NA	160898519	160913896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160898927_160902326_160902501_160905798_160906051_160910477_160911021_160913557
ENSMUSG00000026708.17_160898520_160913896_3	chr1	+	1615	5	FSM	ENSMUSG00000026708.17	ENSMUST00000143486.7	1997	5	-16	398	0	2	multi-exon	FALSE	canonical	3	21	junction_2	42.0200844834943	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTTTCCAATTGAAGTT	NA	False	NA	8	True	AATAAA	-14	NA	160898519	160913896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160898927_160902326_160902501_160905898_160906051_160910477_160911021_160913557
ENSMUSG00000026709.11_160869075_160898213_1	chr1	-	2150	17	NIC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	-1	0	combination_of_known_junctions	TRUE	canonical	3	27	junction_16	96.678510409501	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTATTTAGAGTCTTCC	NA	False	NA	-16	True	AATGAA	-26	NA	160898213	160869074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160898112
ENSMUSG00000026723.11_13515922_13549475_1	chr2	-	1619	12	NNC	ENSMUSG00000026723.11	novel	3788	11	NA	NA	-1	-2097	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	11.4437178262115	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATGATCCTTAGAAAATTA	9033	False	NA	NA	False	TATAAA	-18	NA	13549475	13515921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_13516108_13516175_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530506_13538194_13538305_13549379
ENSMUSG00000026727.11_13227957_13276122_1	chr2	-	586	5	NNC	ENSMUSG00000026727.11	novel	3674	2	NA	NA	0	-4040	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	158.686010725583	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTGTATATTTTTTCTTT	7147	False	NA	NA	False	AATAAA	-15	NA	13276122	13227956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_13228147_13229115_13229237_13246555_13246607_13275721_13275834_13276010
ENSMUSG00000026728.10_13578738_13587636_1	chr2	+	1884	10	NIC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	86.9850278020786	1109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGGTGTGTTATTTT	9	False	NA	13	True	AATAAA	-13	NA	13578737	13587636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_13578872_13579204_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
ENSMUSG00000026728.10_13579133_13587378_1	chr2	+	1564	9	FSM	ENSMUSG00000026728.10	ENSMUST00000028062.8	2193	9	370	259	0	89	multi-exon	FALSE	canonical	3	229	junction_1	35.7786161694384	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGTATCTTAGGAAAACAGC	91	False	NA	NA	False	NA	NA	NA	13579132	13587378	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
ENSMUSG00000026728.10_13579133_13587636_1	chr2	+	1822	9	FSM	ENSMUSG00000026728.10	ENSMUST00000028062.8	2193	9	370	1	0	0	multi-exon	FALSE	canonical	3	229	junction_1	35.7786161694384	1153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGGTGTGTTATTTT	91	False	NA	13	True	AATAAA	-13	NA	13579132	13587636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
ENSMUSG00000026728.10_13584842_13587636_1	chr2	+	691	4	ISM	ENSMUSG00000026728.10	ENSMUST00000148248.3	535	5	662	-347	662	0	3prime_fragment	FALSE	canonical	3	288	junction_2	15.9373774505092	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGGTGTGTTATTTT	2061	False	NA	13	True	AATAAA	-13	NA	13584841	13587636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_13585050_13585450_13585495_13586423_13586510_13587283
ENSMUSG00000026730.13_12928912_13006425_1	chr2	+	1721	5	FSM	ENSMUSG00000026730.13	ENSMUST00000134794.8	3571	5	9	1841	0	0	multi-exon	FALSE	canonical	2	8	junction_1	18.3490462967425	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGTGTTTTCCACTTAT	4772	False	NA	NA	False	AATAAA	-39	NA	12928911	13006425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_12929010_12982970_12983429_12985103_12985370_12999560_12999702_13005667
ENSMUSG00000026743.17_18069447_18131040_2	chr2	+	928	8	ISM	ENSMUSG00000026743.17	ENSMUST00000114680.9	3543	23	-51	84741	0	0	5prime_fragment	FALSE	canonical	3	88	junction_1	45.5299856340493	204	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGATCCATCACTTA	4642	False	NA	NA	False	NA	NA	NA	18069446	18131040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_18069676_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944
ENSMUSG00000026743.17_18069495_18131040_1	chr2	+	880	8	ISM	ENSMUSG00000026743.17	ENSMUST00000114680.9	3543	23	-3	84741	0	0	5prime_fragment	FALSE	canonical	3	88	junction_1	45.5299856340493	174	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGATCCATCACTTA	4690	False	NA	NA	False	NA	NA	NA	18069494	18131040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_18069676_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944
ENSMUSG00000026749.12_38478048_38533932_1	chr2	+	986	8	NNC	ENSMUSG00000026749.12	novel	10338	10	NA	NA	73410	49314	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8093	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGGCCGAGGGCGGAGCGA	4917	False	NA	NA	False	AAGAAA	-7	NA	38478047	38533932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_38478301_38480708_38480861_38503443_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533376_38533464_38533852
ENSMUSG00000026749.12_38478048_38533932_2	chr2	+	993	8	NIC	ENSMUSG00000026749.12	novel	10338	10	NA	NA	73410	49314	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	26117	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGGCCGAGGGCGGAGCGA	4917	False	NA	NA	False	AAGAAA	-7	NA	38478047	38533932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_38478301_38480708_38480861_38503443_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
ENSMUSG00000026750.7_38478048_38533932_1	chr2	-	992	7	NNC	ENSMUSG00000026750.7	novel	1160	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	652.627871676416	826	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGTTGTAATGTTGG	2380	False	NA	-18	True	AATAAA	-24	NA	38533932	38478047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_38478301_38480708_38480861_38523804_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
ENSMUSG00000026750.7_38478048_38533932_2	chr2	-	983	8	NNC	ENSMUSG00000026750.7	novel	1160	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	609.545029392532	5318	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGTTGTAATGTTGG	2380	False	NA	-18	True	AATAAA	-24	NA	38533932	38478047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_38478301_38480708_38480861_38503443_38503503_38523872_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
ENSMUSG00000026750.7_38478048_38533932_3	chr2	-	978	8	NNC	ENSMUSG00000026750.7	novel	1160	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	614.944696368573	2946	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGTTGTAATGTTGG	2380	False	NA	-18	True	AATAAA	-24	NA	38533932	38478047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_38478301_38480708_38480846_38503443_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
ENSMUSG00000026750.7_38478048_38533932_4	chr2	-	998	8	NNC	ENSMUSG00000026750.7	novel	1160	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	613.895025261499	20166	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGTTGTAATGTTGG	2380	False	NA	-18	True	AATAAA	-24	NA	38533932	38478047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_38478301_38480708_38480861_38503443_38503503_38523862_38523979_38530079_38530226_38532189_38532288_38533369_38533464_38533852
ENSMUSG00000026750.7_38478048_38533932_5	chr2	-	986	8	NNC	ENSMUSG00000026750.7	novel	1160	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	616.302801273159	13334	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGTTGTAATGTTGG	2380	False	NA	-18	True	AATAAA	-24	NA	38533932	38478047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_38478301_38480708_38480861_38503443_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533859
ENSMUSG00000026750.7_38478048_38533932_6	chr2	-	934	7	NIC	ENSMUSG00000026750.7	novel	1160	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	19	junction_2	645.680175387853	561	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGTTGTAATGTTGG	2380	False	NA	-18	True	AATAAA	-24	NA	38533932	38478047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_38478301_38480708_38480861_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
ENSMUSG00000026750.7_38478048_38533932_7	chr2	-	982	8	NNC	ENSMUSG00000026750.7	novel	1160	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	598.951669202797	5049	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGTTGTAATGTTGG	2380	False	NA	-18	True	AATAAA	-24	NA	38533932	38478047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_38478286_38480704_38480861_38503443_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
ENSMUSG00000026753.6_39086789_39116332_1	chr2	-	1561	7	FSM	ENSMUSG00000026753.6	ENSMUST00000028087.6	4115	7	131	2423	0	0	multi-exon	FALSE	canonical	3	417	junction_2	25.493463214453	761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTTAGTTAAAAACTGC	NA	False	NA	5	True	AATAAA	-36	NA	39116332	39086788	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39094987_39096663_39096730_39100969_39101066_39116178
ENSMUSG00000026753.6_39086789_39116463_1	chr2	-	1692	7	FSM	ENSMUSG00000026753.6	ENSMUST00000028087.6	4115	7	0	2423	0	0	multi-exon	FALSE	canonical	3	417	junction_2	25.493463214453	783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTTAGTTAAAAACTGC	NA	False	NA	5	True	AATAAA	-36	NA	39116463	39086788	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39094987_39096663_39096730_39100969_39101066_39116178
ENSMUSG00000026753.6_39087254_39116332_1	chr2	-	1096	7	FSM	ENSMUSG00000026753.6	ENSMUST00000028087.6	4115	7	131	2888	0	255	multi-exon	FALSE	canonical	3	417	junction_2	25.493463214453	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGCCTCTTGCCTTTTTT	NA	False	NA	3	True	AATATA	-29	NA	39116332	39087253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39094987_39096663_39096730_39100969_39101066_39116178
ENSMUSG00000026754.17_38945619_38955561_1	chr2	-	981	4	ISM	ENSMUSG00000026754.17	ENSMUST00000136261.2	1494	9	-64	8535	-8	-8535	5prime_fragment	FALSE	canonical	3	34	junction_3	10.6770782520313	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATGAAGTTTGAAGACT	NA	False	NA	NA	False	ATTAAA	-12	NA	38955561	38945618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_38946163_38953253_38953517_38954686_38954736_38955436
ENSMUSG00000026755.15_38895360_38905602_1	chr2	+	843	4	FSM	ENSMUSG00000026755.15	ENSMUST00000141467.8	579	4	0	-264	0	197	multi-exon	FALSE	canonical	2	17	junction_1	441.536962086855	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATCGCGGTGTGTTCTCT	NA	False	NA	19	True	AATAAA	-21	NA	38895359	38905602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_38895422_38903128_38903200_38903734_38903912_38905069
ENSMUSG00000026755.15_38898153_38905338_1	chr2	+	723	4	FSM	ENSMUSG00000026755.15	ENSMUST00000112862.7	1339	4	65	551	0	0	multi-exon	FALSE	canonical	0	0	junction_1	449.53704580997	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAACACAGAACCAACACT	NA	False	NA	NA	False	NA	NA	NA	38898152	38905338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_38898357_38903126_38903200_38903734_38903912_38905069
ENSMUSG00000026755.15_38898153_38905602_1	chr2	+	980	4	NNC	ENSMUSG00000026755.15	novel	1339	4	NA	NA	0	197	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	463.862048458375	1374	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATCGCGGTGTGTTCTCT	NA	False	NA	19	True	AATAAA	-21	NA	38898152	38905602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_38898357_38903126_38903200_38903734_38903912_38905076
ENSMUSG00000026755.15_38898153_38905602_3	chr2	+	978	4	NNC	ENSMUSG00000026755.15	novel	1339	4	NA	NA	0	197	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	433.692159127749	1521	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATCGCGGTGTGTTCTCT	NA	False	NA	19	True	AATAAA	-21	NA	38898152	38905602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_38898357_38903128_38903200_38903741_38903912_38905069
ENSMUSG00000026755.15_38898153_38905602_4	chr2	+	988	4	NNC	ENSMUSG00000026755.15	novel	1339	4	NA	NA	0	197	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	449.53704580997	2961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATCGCGGTGTGTTCTCT	NA	False	NA	19	True	AATAAA	-21	NA	38898152	38905602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_38898349_38903117_38903200_38903734_38903912_38905069
ENSMUSG00000026755.15_38898153_38905602_5	chr2	+	965	4	FSM	ENSMUSG00000026755.15	ENSMUST00000090993.8	752	4	-16	-197	0	197	multi-exon	FALSE	canonical	3	442	junction_1	241.831897537663	793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATCGCGGTGTGTTCTCT	NA	False	NA	19	True	AATAAA	-21	NA	38898152	38905602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_38898337_38903128_38903200_38903734_38903912_38905069
ENSMUSG00000026755.15_38898153_38905889_1	chr2	+	1275	4	NNC	ENSMUSG00000026755.15	novel	1339	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	449.53704580997	4142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGCTTCAAAAGTCATC	NA	False	NA	8	True	AATAAA	-19	NA	38898152	38905889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_38898349_38903117_38903200_38903734_38903912_38905069
ENSMUSG00000026761.13_48795218_48839253_1	chr2	-	1558	13	NIC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	0	110	combination_of_known_splicesites	FALSE	canonical	3	21	junction_10	129.063587902329	1005	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCATGGTCCATAAAATGAT	NA	False	NA	-39	True	AATAAA	-15	NA	48839253	48795217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48827463_48827541_48830344_48830413_48839128
ENSMUSG00000026764.16_49590382_49600807_1	chr2	+	461	3	ISM	ENSMUSG00000026764.16	ENSMUST00000146247.2	729	7	-209	19456	-209	-19456	5prime_fragment	FALSE	canonical	3	34	junction_1	0	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAAGAGAAGAACAAGGC	NA	False	NA	NA	False	NA	NA	NA	49590381	49600807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_49590618_49590968_49591118_49600731
ENSMUSG00000026764.16_49590382_49601042_1	chr2	+	696	3	ISM	ENSMUSG00000026764.16	ENSMUST00000146247.2	729	7	-209	19221	-209	-19221	5prime_fragment	FALSE	canonical	3	34	junction_1	0	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTGCCCCAGCTCAT	NA	False	NA	NA	False	ACTAAA	-16	NA	49590381	49601042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_49590618_49590968_49591118_49600731
ENSMUSG00000026766.17_50169893_50186699_1	chr2	-	1272	8	FSM	ENSMUSG00000026766.17	ENSMUST00000134480.8	803	8	0	-469	0	0	multi-exon	FALSE	canonical	3	69	junction_6	199.415574689068	2675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186699	50169892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182926_50186263_50186322_50186654
ENSMUSG00000026766.17_50169893_50186699_2	chr2	-	1257	8	NIC	ENSMUSG00000026766.17	novel	1351	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_6	203.005881085012	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186699	50169892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182911_50186263_50186322_50186654
ENSMUSG00000026766.17_50169893_50186699_3	chr2	-	1277	8	NIC	ENSMUSG00000026766.17	novel	1342	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	208.37515226541	2406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186699	50169892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263_50186322_50186689
ENSMUSG00000026766.17_50169893_50186813_1	chr2	-	1391	8	NIC	ENSMUSG00000026766.17	novel	1342	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	208.37515226541	2529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186813	50169892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263_50186322_50186689
ENSMUSG00000026767.13_12352074_12424248_1	chr2	-	1682	8	NIC	ENSMUSG00000026767.13	novel	1843	10	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	71.3370842678388	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	12424248	12352073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361711_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12423969
ENSMUSG00000026767.13_12352331_12424248_1	chr2	-	2054	15	FSM	ENSMUSG00000026767.13	ENSMUST00000028105.13	2344	15	33	257	-2	112	multi-exon	FALSE	canonical	3	102	junction_11	25.5990473355904	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTATGTGGGAACTTCTAT	NA	False	NA	-2	True	AATAAA	-23	NA	12424248	12352330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12423969
ENSMUSG00000026767.13_12352331_12424248_2	chr2	-	1425	8	NIC	ENSMUSG00000026767.13	novel	1221	9	NA	NA	-2	112	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	71.3370842678388	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTATGTGGGAACTTCTAT	NA	False	NA	-2	True	AATAAA	-23	NA	12424248	12352330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361711_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12423969
ENSMUSG00000026767.13_12352729_12424248_2	chr2	-	1027	8	NIC	ENSMUSG00000026767.13	novel	1221	9	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	71.3370842678388	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACGTTTAAATTATTTGT	NA	False	NA	-3	True	ATTAAA	-22	NA	12424248	12352728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361711_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12423969
ENSMUSG00000026775.10_23046530_23087094_1	chr2	+	2380	19	FSM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	149	2178	0	1772	multi-exon	TRUE	canonical	3	665	junction_5	65.7463325738674	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCCTTTGCAACATTTTT	7222	False	NA	13	True	AATATA	-13	NA	23046529	23087094	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
ENSMUSG00000026775.10_23046530_23087280_2	chr2	+	2566	19	FSM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	149	1992	0	1958	multi-exon	FALSE	canonical	3	665	junction_5	65.7463325738674	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACATTGAAAAATGTCAATC	7222	False	NA	10	True	AATAAA	-22	NA	23046529	23087280	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
ENSMUSG00000026775.10_23046530_23087626_1	chr2	+	2912	19	FSM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	149	1646	0	-1646	multi-exon	FALSE	canonical	3	665	junction_5	65.7463325738674	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCATGTATGCCCATTT	7222	False	NA	11	True	ATTAAA	-3	NA	23046529	23087626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
ENSMUSG00000026779.7_23008151_23045924_1	chr2	-	2945	12	FSM	ENSMUSG00000026779.7	ENSMUST00000028119.7	5590	12	112	2533	-15	-2533	multi-exon	TRUE	canonical	3	112	junction_2	17.5310821963508	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGGGAGTGAGCCGTAAG	NA	False	NA	-23	True	AATAAA	-22	NA	23045924	23008150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_23008605_23010468_23010571_23010904_23011019_23021691_23021831_23022636_23023744_23026882_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045690
ENSMUSG00000026784.15_22785534_22830278_1	chr2	+	1528	10	NIC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	31	junction_8	77.9635875755748	191	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	5608	False	NA	19	True	AATAAA	-21	NA	22785533	22830278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22825570_22825652_22829834
ENSMUSG00000026784.15_22785534_22830278_2	chr2	+	1725	11	NIC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	20	junction_4	78.6860216302743	827	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	5608	False	NA	19	True	AATAAA	-21	NA	22785533	22830278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802528_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22819755_22819870_22825570_22825652_22829834
ENSMUSG00000026784.15_22785631_22830278_1	chr2	+	1431	10	NIC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	31	junction_8	77.9635875755748	162	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	5705	False	NA	19	True	AATAAA	-21	NA	22785630	22830278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22825570_22825652_22829834
ENSMUSG00000026784.15_22785631_22830278_2	chr2	+	1628	11	NIC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	20	junction_4	78.6860216302743	542	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	5705	False	NA	19	True	AATAAA	-21	NA	22785630	22830278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802528_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22819755_22819870_22825570_22825652_22829834
ENSMUSG00000026785.15_29980956_29983636_1	chr2	+	1135	5	NNC	ENSMUSG00000026785.15	novel	3449	21	NA	NA	6291	2602	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2460	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCAGAAGGTGGGGCCGCG	780	False	NA	NA	False	NA	NA	NA	29980955	29983636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_29981579_29981678_29981846_29982005_29982078_29982416_29982554_29983500
ENSMUSG00000026788.14_33343534_33358544_1	chr2	-	1702	2	NIC	ENSMUSG00000026788.14	novel	4998	3	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGTTCTCATCCTGGCC	NA	False	NA	NA	False	ATTAAA	-20	NA	33358544	33343533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_33345136_33358444
ENSMUSG00000026788.14_33343534_33358544_2	chr2	-	1763	3	FSM	ENSMUSG00000026788.14	ENSMUST00000028125.12	4998	3	0	3235	0	0	multi-exon	TRUE	canonical	3	44	junction_1	8.5	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGTTCTCATCCTGGCC	NA	False	NA	NA	False	ATTAAA	-20	NA	33358544	33343533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_33345136_33354925_33354987_33358444
ENSMUSG00000026788.14_33343534_33358544_3	chr2	-	1826	3	FSM	ENSMUSG00000026788.14	ENSMUST00000126442.2	487	3	27	-1366	0	0	multi-exon	FALSE	canonical	3	37	junction_2	3.5	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGTTCTCATCCTGGCC	NA	False	NA	NA	False	ATTAAA	-20	NA	33358544	33343533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_33345136_33354925_33355050_33358444
ENSMUSG00000026790.20_29779837_29782489_1	chr2	+	389	2	ISM	ENSMUSG00000026790.20	ENSMUST00000153216.8	828	5	0	9016	0	-100	5prime_fragment	FALSE	canonical	3	1240	junction_1	0	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATAAAAGCATGAGAGAG	7233	False	NA	NA	False	NA	NA	NA	29779836	29782489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_29779934_29782197
ENSMUSG00000026790.20_29779837_29812551_2	chr2	+	2087	16	NIC	ENSMUSG00000026790.20	novel	2364	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	278.954476572791	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7233	False	NA	13	True	AATAAA	-17	NA	29779836	29812551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_29779934_29782197_29782289_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ENSMUSG00000026790.20_29811014_29812551_1	chr2	+	434	2	ISM	ENSMUSG00000026790.20	ENSMUST00000113764.4	2450	16	30462	-3	-4470	0	3prime_fragment	FALSE	canonical	3	1079	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7358	False	NA	13	True	AATAAA	-17	NA	29811013	29812551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_29811121_29812224
ENSMUSG00000026792.17_32851571_32854057_1	chr2	-	791	7	NIC	ENSMUSG00000026792.17	novel	377	2	NA	NA	-2431	-485	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	355030	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCGGGATTCGGAAGGGG	NA	False	NA	NA	False	NA	NA	NA	32854057	32851570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_32851852_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
ENSMUSG00000026798.11_29666945_29677664_1	chr2	+	1735	8	NIC	ENSMUSG00000026798.11	novel	3026	7	NA	NA	-10560	-2986	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGCGGAAGTGCTGCGTG	NA	False	NA	NA	False	NA	NA	NA	29666944	29677664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
ENSMUSG00000026798.11_29668436_29677664_1	chr2	+	1019	7	NIC	ENSMUSG00000026798.11	novel	3026	7	NA	NA	-9069	-2986	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGCGGAAGTGCTGCGTG	NA	False	NA	NA	False	NA	NA	NA	29668435	29677664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
ENSMUSG00000026798.11_29678283_29687000_1	chr2	+	1224	7	FSM	ENSMUSG00000026798.11	ENSMUST00000028137.10	1991	7	12	755	0	2	multi-exon	FALSE	canonical	3	105	junction_3	15.3884877605162	598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGGTTGTCCTAGAC	NA	False	NA	29	True	AATAAA	-19	NA	29678282	29687000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29678370_29678448_29678581_29679914_29680012_29680468_29680572_29685392_29685523_29685947_29686042_29686419
ENSMUSG00000026798.11_29678283_29687554_1	chr2	+	1778	7	FSM	ENSMUSG00000026798.11	ENSMUST00000028137.10	1991	7	12	201	0	-201	multi-exon	FALSE	canonical	3	105	junction_3	15.3884877605162	689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGGTTTGGGGAGATGT	NA	False	NA	NA	False	AATAAA	-15	NA	29678282	29687554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29678370_29678448_29678581_29679914_29680012_29680468_29680572_29685392_29685523_29685947_29686042_29686419
ENSMUSG00000026799.16_29351153_29414805_1	chr2	+	1109	6	NNC	ENSMUSG00000026799.16	novel	1254	8	NA	NA	-35370	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	71.1910106684826	138	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGTGTTCTGCTTCTT	4330	False	NA	32	True	AATAAA	-20	NA	29351152	29414805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_29351513_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
ENSMUSG00000026799.16_29351254_29414805_1	chr2	+	1008	6	NNC	ENSMUSG00000026799.16	novel	1254	8	NA	NA	-35269	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	71.1910106684826	147	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGTGTTCTGCTTCTT	4431	False	NA	32	True	AATAAA	-20	NA	29351253	29414805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_29351513_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
ENSMUSG00000026799.16_29352119_29414805_1	chr2	+	865	6	NNC	ENSMUSG00000026799.16	novel	1254	8	NA	NA	-34404	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	71.9844427636972	300	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGTGTTCTGCTTCTT	5296	False	NA	32	True	AATAAA	-20	NA	29352118	29414805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_29352235_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
ENSMUSG00000026799.16_29397151_29414805_1	chr2	+	629	4	NNC	ENSMUSG00000026799.16	novel	1254	8	NA	NA	2268	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	85.6193124631743	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGTGTTCTGCTTCTT	NA	False	NA	32	True	AATAAA	-20	NA	29397150	29414805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_29397233_29399434_29399477_29412785_29412864_29414378
ENSMUSG00000026803.18_28976463_28977668_1	chr2	+	993	2	NNC	ENSMUSG00000026803.18	novel	4160	12	NA	NA	3042	0	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_1	0	92	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTGTGAAATGACTTGAA	NA	False	NA	21	True	AATAAA	-23	NA	28976462	28977668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_28976918_28977130
ENSMUSG00000026806.16_28765723_28795230_1	chr2	+	1106	5	ISM	ENSMUSG00000026806.16	ENSMUST00000113853.3	3271	20	35252	353	18570	-353	3prime_fragment	FALSE	canonical	3	109	junction_3	15.6744218394172	200	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTAGTCCATATGTTC	NA	False	NA	10	True	GATAAA	-19	NA	28765722	28795230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_28765842_28771154_28771237_28776902_28777015_28782390_28782554_28794600
ENSMUSG00000026806.16_28765723_28795583_1	chr2	+	1459	5	ISM	ENSMUSG00000026806.16	ENSMUST00000113853.3	3271	20	35252	0	18570	0	3prime_fragment	FALSE	canonical	3	109	junction_3	15.6744218394172	285	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAGGACTCAGCAGAGAAA	NA	False	NA	18	True	AATAAA	-19	NA	28765722	28795583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_28765842_28771154_28771237_28776902_28777015_28782390_28782554_28794600
ENSMUSG00000026810.13_32460879_32463468_1	chr2	+	737	4	FSM	ENSMUSG00000026810.13	ENSMUST00000028151.7	869	4	9	123	0	0	multi-exon	FALSE	canonical	3	274	junction_1	58.5965490072202	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCCTGGGGAAAGACTGA	4782	False	NA	NA	False	NA	NA	NA	32460878	32463468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_32460925_32461217_32461308_32462308_32462412_32462970
ENSMUSG00000026810.13_32460879_32463583_1	chr2	+	762	3	NIC	ENSMUSG00000026810.13	novel	655	3	NA	NA	0	-8	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	196	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTCTCTCTGCCATCC	4782	False	NA	15	True	AATAAA	-16	NA	32460878	32463583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_32460925_32462308_32462412_32462970
ENSMUSG00000026810.13_32460879_32463583_2	chr2	+	1145	3	FSM	ENSMUSG00000026810.13	ENSMUST00000128039.2	655	3	0	-490	0	-8	multi-exon	FALSE	canonical	3	393	junction_2	5	2258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTCTCTCTGCCATCC	4782	False	NA	15	True	AATAAA	-16	NA	32460878	32463583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_32461308_32462308_32462412_32462970
ENSMUSG00000026817.15_32518402_32523875_1	chr2	+	831	6	ISM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	2953	1191	0	463	3prime_fragment	FALSE	canonical	3	200	junction_1	44.5268458348444	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTAGGATTGCTCCTTTC	NA	False	NA	NA	False	ACTAAA	-15	NA	32518401	32523875	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
ENSMUSG00000026817.15_32518402_32525070_1	chr2	+	2026	6	ISM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	2953	-4	0	0	3prime_fragment	FALSE	canonical	3	200	junction_1	44.5268458348444	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTGAGTGTATTGAAACA	NA	False	NA	17	True	AATAAA	-21	NA	32518401	32525070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
ENSMUSG00000026827.13_57127647_57257624_1	chr2	+	2681	17	FSM	ENSMUSG00000026827.13	ENSMUST00000169687.8	5745	17	-43	3107	0	-241	multi-exon	TRUE	canonical	3	41	junction_1	44.6148447828747	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAATCAAAGAAAGGAAAG	NA	False	NA	59	True	NA	NA	NA	57127646	57257624	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_57128001_57157984_57158095_57179856_57180029_57194372_57194498_57195819_57195918_57196943_57197108_57228858_57229024_57230075_57230221_57235242_57235437_57245471_57245607_57245771_57245948_57246530_57246663_57247666_57247826_57254042_57254156_57254261_57254341_57254516_57254616_57257363
ENSMUSG00000026831.17_28352013_28356328_1	chr2	-	754	4	NNC	ENSMUSG00000026831.17	novel	812	3	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	63.8957484240279	1097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCCACGCCTCTTATT	NA	False	NA	0	True	ATTAAA	-19	NA	28356328	28352012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_28352447_28355148_28355228_28356045_28356123_28356164
ENSMUSG00000026831.17_28352013_28356328_2	chr2	-	752	4	NNC	ENSMUSG00000026831.17	novel	812	3	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	63.8957484240279	1075	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCCACGCCTCTTATT	NA	False	NA	0	True	ATTAAA	-19	NA	28356328	28352012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_28352447_28355148_28355228_28356045_28356147_28356190
ENSMUSG00000026843.16_31462804_31475320_1	chr2	+	455	3	NNC	ENSMUSG00000026843.16	novel	1909	2	NA	NA	0	407	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	350	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTGGTGTCTTTTGCAT	634	False	NA	NA	False	AATAAA	-13	NA	31462803	31475320	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_31462966_31473166_31473273_31475133
ENSMUSG00000026843.16_31462804_31475460_1	chr2	+	595	3	NNC	ENSMUSG00000026843.16	novel	1909	2	NA	NA	0	547	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	350	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATGGATGACTGACTCAA	634	False	NA	NA	False	AATAAA	-20	NA	31462803	31475460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_31462966_31473166_31473273_31475133
ENSMUSG00000026843.16_31462804_31507532_1	chr2	+	3121	19	FSM	ENSMUSG00000026843.16	ENSMUST00000113482.8	3268	19	141	6	0	0	multi-exon	FALSE	canonical	3	465	junction_18	67.3624112131124	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTAGTCTGTTTTGTTTG	634	False	NA	30	True	AATAAA	-31	NA	31462803	31507532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505638_31506190
ENSMUSG00000026853.16_30282440_30290539_1	chr2	-	2075	8	NIC	ENSMUSG00000026853.16	novel	3036	8	NA	NA	4434	8043	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	270	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCGGGCTTCGCAGAGCA	NA	False	NA	NA	False	NA	NA	NA	30290539	30282439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_30282525_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287030_30287160_30287479_30287570_30289153
ENSMUSG00000026854.17_30909286_30911725_1	chr2	+	683	4	NNC	ENSMUSG00000026854.17	novel	622	2	NA	NA	-545	332	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	12.5521135891752	26	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTCTGTCATCGCTGTGT	7655	False	NA	NA	False	AATATA	-11	NA	30909285	30911725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_30909404_30909796_30909900_30910840_30910913_30911335
ENSMUSG00000026854.17_30909286_30912649_1	chr2	+	1607	4	NNC	ENSMUSG00000026854.17	novel	622	2	NA	NA	-545	-945	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	12.5521135891752	69	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCCTAGCTTGTACTGTG	7655	False	NA	16	True	AATAAA	-16	NA	30909285	30912649	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_30909404_30909796_30909900_30910840_30910913_30911335
ENSMUSG00000026857.10_30697969_30713032_1	chr2	+	1243	4	FSM	ENSMUSG00000026857.10	ENSMUST00000041830.10	1387	4	131	13	0	3	multi-exon	FALSE	canonical	3	480	junction_2	33.3466640010661	2068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCCCCAGGCAGTCTGTG	NA	False	NA	14	True	AATAAA	-20	NA	30697968	30713032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_30698096_30709640_30709845_30710460_30710714_30712373
ENSMUSG00000026860.17_30235153_30249277_1	chr2	-	1427	11	FSM	ENSMUSG00000026860.17	ENSMUST00000028214.15	1810	11	51	332	0	0	multi-exon	FALSE	canonical	3	213	junction_5	55.8	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTCCCAGCTCCCTTAA	NA	False	NA	44	True	NA	NA	NA	30249277	30235152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ENSMUSG00000026864.14_34661982_34666543_1	chr2	+	2656	9	FSM	ENSMUSG00000026864.14	ENSMUST00000028222.13	3672	9	0	1016	0	0	multi-exon	FALSE	canonical	3	1920	junction_1	305.196632312678	2338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCAGGTGTGTCTTTCTT	NA	False	NA	18	True	ACTAAA	-14	NA	34661981	34666543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
ENSMUSG00000026864.14_34662111_34666543_1	chr2	+	2522	9	NNC	ENSMUSG00000026864.14	novel	3672	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	882.770355188709	2298	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCAGGTGTGTCTTTCTT	NA	False	NA	18	True	ACTAAA	-14	NA	34662110	34666543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_34662159_34662245_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
ENSMUSG00000026869.13_34742114_34760951_1	chr2	-	2006	10	FSM	ENSMUSG00000026869.13	ENSMUST00000028225.12	4397	10	23	2368	-6	0	multi-exon	FALSE	canonical	3	516	junction_4	38.498997902623	755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGCGTTGGTATTCCG	NA	False	NA	-14	True	AATAAA	-14	NA	34760951	34742113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753579_34755538_34755668_34755993_34756108_34756904_34757050_34760761
ENSMUSG00000026869.13_34742300_34760951_1	chr2	-	1820	10	FSM	ENSMUSG00000026869.13	ENSMUST00000028225.12	4397	10	23	2554	-6	155	multi-exon	FALSE	canonical	3	516	junction_4	38.498997902623	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGATTCTCTCAACCAC	NA	False	NA	-21	True	AATAAA	-16	NA	34760951	34742299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753579_34755538_34755668_34755993_34756108_34756904_34757050_34760761
ENSMUSG00000026878.18_35070217_35090990_1	chr2	-	2939	8	FSM	ENSMUSG00000026878.18	ENSMUST00000028238.15	3081	8	142	0	0	0	multi-exon	FALSE	canonical	3	853	junction_1	102.482054178141	937	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGCATTATTTTTGA	9694	False	NA	NA	False	AATAAA	-26	NA	35090990	35070216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
ENSMUSG00000026878.18_35071523_35091047_1	chr2	-	1690	8	FSM	ENSMUSG00000026878.18	ENSMUST00000028238.15	3081	8	85	1306	-53	618	multi-exon	FALSE	canonical	3	853	junction_1	102.482054178141	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTTTGTACAGTGTGACC	9637	False	NA	-11	True	AATAAA	-32	NA	35091047	35071522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
ENSMUSG00000026878.18_35072141_35090990_1	chr2	-	1015	8	FSM	ENSMUSG00000026878.18	ENSMUST00000028238.15	3081	8	142	1924	0	0	multi-exon	FALSE	canonical	3	853	junction_1	102.482054178141	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTTAACAATACTAAACTG	9694	False	NA	NA	False	NA	NA	NA	35090990	35072140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
ENSMUSG00000026887.10_36007605_36026627_1	chr2	+	945	6	NIC	ENSMUSG00000026887.10	novel	2623	7	NA	NA	-18796	-2202	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCGCCGCGCTGGCCCGT	NA	False	NA	NA	False	NA	NA	NA	36007604	36026627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_36007987_36010824_36010911_36012863_36012951_36017136_36017264_36024146_36024276_36026493
ENSMUSG00000026887.10_36026646_36079608_1	chr2	+	1327	7	FSM	ENSMUSG00000026887.10	ENSMUST00000028250.9	2623	7	245	1051	0	-1051	multi-exon	FALSE	canonical	3	141	junction_1	20.1941960858945	828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGAGTGGTTTGGATGGA	NA	False	NA	26	True	AATAAA	-27	NA	36026645	36079608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_36026712_36031457_36031670_36037914_36038071_36043604_36043724_36049610_36049703_36067126_36067287_36079086
ENSMUSG00000026887.10_36026646_36079608_2	chr2	+	1171	6	NIC	ENSMUSG00000026887.10	novel	2623	7	NA	NA	0	-1051	combination_of_known_splicesites	FALSE	canonical	2	5	junction_2	66.6123111744368	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGAGTGGTTTGGATGGA	NA	False	NA	26	True	AATAAA	-27	NA	36026645	36079608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_36026712_36031457_36031670_36043604_36043724_36049610_36049703_36067126_36067287_36079086
ENSMUSG00000026889.13_36006091_36026627_2	chr2	-	2459	6	FSM	ENSMUSG00000026889.13	ENSMUST00000028251.10	2617	6	158	0	0	0	multi-exon	FALSE	canonical	3	240	junction_3	16.6300932047899	1194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTGGTCTTATTGTCT	NA	False	NA	-23	True	AATAAA	-16	NA	36026627	36006090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_36007987_36010824_36010911_36012863_36012951_36017136_36017264_36024146_36024276_36026493
ENSMUSG00000026893.5_62494629_62522097_1	chr2	+	974	8	FSM	ENSMUSG00000026893.5	ENSMUST00000028257.3	3330	8	0	2356	0	1322	multi-exon	FALSE	canonical	3	236	junction_6	22.3332825667003	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTTTTATTTGGAATA	NA	False	NA	NA	False	NA	NA	NA	62494628	62522097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_62494804_62502620_62502795_62509499_62509570_62516308_62516353_62516620_62516769_62520304_62520419_62520734_62520794_62521907
ENSMUSG00000026893.5_62494629_62522315_1	chr2	+	1192	8	FSM	ENSMUSG00000026893.5	ENSMUST00000028257.3	3330	8	0	2138	0	1540	multi-exon	FALSE	canonical	3	236	junction_6	22.3332825667003	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTACAAGTTATACTTGTG	NA	False	NA	NA	False	GATAAA	-19	NA	62494628	62522315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_62494804_62502620_62502795_62509499_62509570_62516308_62516353_62516620_62516769_62520304_62520419_62520734_62520794_62521907
ENSMUSG00000026893.5_62494629_62523844_1	chr2	+	2721	8	FSM	ENSMUSG00000026893.5	ENSMUST00000028257.3	3330	8	0	609	0	-609	multi-exon	FALSE	canonical	3	236	junction_6	22.3332825667003	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTGTATCATACAAAATT	NA	False	NA	15	True	AATAAA	-23	NA	62494628	62523844	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_62494804_62502620_62502795_62509499_62509570_62516308_62516353_62516620_62516769_62520304_62520419_62520734_62520794_62521907
ENSMUSG00000026914.16_61542104_61630444_1	chr2	+	1199	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	66	276	0	26	multi-exon	FALSE	canonical	3	1717	junction_5	150.997564426748	1441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCGCTCTGAGTGTATCG	8613	False	NA	20	True	AATAAA	-20	NA	61542103	61630444	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
ENSMUSG00000026914.16_61542104_61630720_1	chr2	+	1468	12	NNC	ENSMUSG00000026914.16	novel	1541	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	585.544671210891	15622	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8613	False	NA	31	True	AATAAA	-17	NA	61542103	61630720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595199_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
ENSMUSG00000026914.16_61542104_61630720_2	chr2	+	1295	10	NIC	ENSMUSG00000026914.16	novel	1541	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	160	junction_1	558.351166105488	6237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8613	False	NA	31	True	AATAAA	-17	NA	61542103	61630720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_61542218_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
ENSMUSG00000026917.16_27405169_27425139_1	chr2	+	1482	14	FSM	ENSMUSG00000026917.16	ENSMUST00000113952.10	2890	14	0	1408	0	84	multi-exon	FALSE	canonical	3	1324	junction_4	114.959164347413	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTGTTTTTCTCTGTGG	NA	False	NA	22	True	NA	NA	NA	27405168	27425139	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_27405293_27408640_27408805_27409360_27409470_27409754_27409829_27410338_27410429_27410584_27410675_27410839_27410924_27415117_27415174_27418285_27418333_27421650_27421727_27423004_27423039_27423348_27423424_27423779_27423868_27424768
ENSMUSG00000026918.17_27338387_27365642_1	chr2	-	2420	12	FSM	ENSMUSG00000026918.17	ENSMUST00000077737.13	5272	12	56	2796	23	-532	multi-exon	TRUE	canonical	3	192	junction_7	30.2258714644446	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGGTTTTCTTTTACTTC	NA	False	NA	-16	True	AATATA	-17	NA	27365642	27338386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_27338593_27339212_27339339_27340268_27340562_27342844_27343087_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900_27354206_27365588
ENSMUSG00000026921.21_26476673_26482694_1	chr2	+	1102	9	NIC	ENSMUSG00000026921.21	novel	1163	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	104.879692982007	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTGTCAATGGGGGAAT	203	False	NA	13	True	AATAAA	-13	NA	26476672	26482694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482262_26482429
ENSMUSG00000026921.21_26476673_26482694_2	chr2	+	970	8	NIC	ENSMUSG00000026921.21	novel	1163	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_7	117.449945917052	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTGTCAATGGGGGAAT	203	False	NA	13	True	AATAAA	-13	NA	26476672	26482694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482429
ENSMUSG00000026921.21_26476673_26482694_3	chr2	+	1100	9	NNC	ENSMUSG00000026921.21	novel	1163	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_1	105.198547399667	334	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTGTCAATGGGGGAAT	203	False	NA	13	True	AATAAA	-13	NA	26476672	26482694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_26476694_26479089_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482293_26482429
ENSMUSG00000026921.21_26476673_26482694_4	chr2	+	1122	9	NNC	ENSMUSG00000026921.21	novel	1163	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	112.832564005255	921	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTGTCAATGGGGGAAT	203	False	NA	13	True	AATAAA	-13	NA	26476672	26482694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_26476694_26479067_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482293_26482429
ENSMUSG00000026921.21_26483069_26494254_1	chr2	+	1399	6	NIC	ENSMUSG00000026921.21	novel	1865	10	NA	NA	910	11122	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCACCCGCCGCCCGC	6599	False	NA	NA	False	NA	NA	NA	26483068	26494254	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494040
ENSMUSG00000026921.21_26483069_26494254_2	chr2	+	1404	6	NNC	ENSMUSG00000026921.21	novel	1865	10	NA	NA	910	11122	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCACCCGCCGCCCGC	6599	False	NA	NA	False	NA	NA	NA	26483068	26494254	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494035
ENSMUSG00000026921.21_26483069_26494254_3	chr2	+	1392	6	NNC	ENSMUSG00000026921.21	novel	1865	10	NA	NA	910	11122	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1591	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCACCCGCCGCCCGC	6599	False	NA	NA	False	NA	NA	NA	26483068	26494254	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_26483775_26484791_26484865_26486091_26486181_26486302_26486479_26487215_26487350_26494040
ENSMUSG00000026921.21_26483069_26494254_4	chr2	+	1304	6	NIC	ENSMUSG00000026921.21	novel	1865	10	NA	NA	910	11122	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCACCCGCCGCCCGC	6599	False	NA	NA	False	NA	NA	NA	26483068	26494254	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494135
ENSMUSG00000026922.14_26483069_26493728_1	chr2	-	1240	6	NIC	ENSMUSG00000026922.14	novel	1273	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	216	junction_5	206.37577377202	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAGAGTTCTTTCTCC	9938	False	NA	1	True	TATAAA	-45	NA	26493728	26483068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26493673
ENSMUSG00000026922.14_26484515_26494254_1	chr2	-	970	5	FSM	ENSMUSG00000026922.14	ENSMUST00000140386.8	1145	5	175	0	-31	0	multi-exon	FALSE	canonical	0	0	junction_4	320.696897396903	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACATTGCATCATTTCA	9571	False	NA	NA	False	NA	NA	NA	26494254	26484514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494040
ENSMUSG00000026926.15_26279360_26285738_1	chr2	+	1730	13	FSM	ENSMUSG00000026926.15	ENSMUST00000076431.13	3135	13	9	1396	0	-1396	multi-exon	FALSE	canonical	3	1351	junction_8	105.114619979018	1022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTGTGTCTTTCAAACAC	653	False	NA	35	True	AATGAA	-20	NA	26279359	26285738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
ENSMUSG00000026926.15_26279360_26286209_1	chr2	+	2201	13	FSM	ENSMUSG00000026926.15	ENSMUST00000076431.13	3135	13	9	925	0	-925	multi-exon	FALSE	canonical	3	1351	junction_8	105.114619979018	1267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCTTTGCCTCAGTTA	653	False	NA	41	True	NA	NA	NA	26279359	26286209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
ENSMUSG00000026939.13_25510116_25511975_1	chr2	-	730	5	NIC	ENSMUSG00000026939.13	novel	795	5	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	2	3	junction_2	18.9406969248758	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGAGCTCTGAAGCAAT	NA	False	NA	-6	True	AATAAA	-18	NA	25511975	25510115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_25510543_25511077_25511186_25511372_25511471_25511619_25511687_25511945
ENSMUSG00000026939.13_25510116_25512017_1	chr2	-	959	4	NIC	ENSMUSG00000026939.13	novel	795	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	29	junction_3	9.56846672960488	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGAGCTCTGAAGCAAT	NA	False	NA	-6	True	AATAAA	-18	NA	25512017	25510115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_25510543_25511077_25511471_25511619_25511687_25511945
ENSMUSG00000026955.14_25262372_25266815_1	chr2	+	1672	7	FSM	ENSMUSG00000026955.14	ENSMUST00000028329.13	3121	7	39	1410	0	0	multi-exon	FALSE	canonical	3	90	junction_3	10.077477638554	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCTGTATTTCTCATAA	6696	False	NA	6	True	AGTAAA	-15	NA	25262371	25266815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_25263011_25263427_25263530_25264963_25265077_25265696_25265844_25265979_25266088_25266175_25266287_25266363
ENSMUSG00000026956.16_25251502_25253877_1	chr2	-	704	5	ISM	ENSMUSG00000026956.16	ENSMUST00000102925.4	3349	9	1817	1601	-167	0	3prime_fragment	FALSE	canonical	3	362	junction_3	47.3781331417775	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGATTGTCTGTCTATTT	1495	False	NA	-16	True	NA	NA	NA	25253877	25251501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_25251752_25252082_25252150_25252674_25252861_25253255_25253397_25253817
ENSMUSG00000026956.16_25251502_25253987_1	chr2	-	814	5	ISM	ENSMUSG00000026956.16	ENSMUST00000102925.4	3349	9	1707	1601	153	0	3prime_fragment	FALSE	canonical	3	362	junction_3	47.3781331417775	1515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGATTGTCTGTCTATTT	1385	False	NA	-16	True	NA	NA	NA	25253987	25251501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_25251752_25252082_25252150_25252674_25252861_25253255_25253397_25253817
ENSMUSG00000026956.16_25251502_25255353_1	chr2	-	1407	9	FSM	ENSMUSG00000026956.16	ENSMUST00000102925.4	3349	9	341	1601	274	0	multi-exon	FALSE	canonical	3	362	junction_3	36.5288841192829	1829	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGATTGTCTGTCTATTT	19	True	NA	-16	True	NA	NA	NA	25255353	25251501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25251752_25252082_25252150_25252674_25252861_25253255_25253397_25253817_25254012_25254112_25254286_25254523_25254700_25254892_25255098_25255338
ENSMUSG00000026956.16_25251502_25255636_1	chr2	-	1690	9	FSM	ENSMUSG00000026956.16	ENSMUST00000102925.4	3349	9	58	1601	-9	0	multi-exon	FALSE	canonical	3	362	junction_3	36.5288841192829	2114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGATTGTCTGTCTATTT	NA	False	NA	-16	True	NA	NA	NA	25255636	25251501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25251752_25252082_25252150_25252674_25252861_25253255_25253397_25253817_25254012_25254112_25254286_25254523_25254700_25254892_25255098_25255338
ENSMUSG00000026960.7_53081738_53108457_1	chr2	+	1493	4	FSM	ENSMUSG00000026960.7	ENSMUST00000155517.2	582	4	0	-911	0	-775	multi-exon	FALSE	canonical	3	23	junction_1	228.30583776057	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAAGGGTTCTTGTTGTT	NA	False	NA	10	True	AATATA	-22	NA	53081737	53108457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_53081893_53084295_53084350_53092930_53093064_53107306
ENSMUSG00000026969.4_25112172_25114669_1	chr2	+	1544	4	NNC	ENSMUSG00000026969.4	novel	254	2	NA	NA	802	2377	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5627	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACCGACGCTCTGCCAAC	NA	False	NA	NA	False	NA	NA	NA	25112171	25114669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_25113381_25113945_25114057_25114135_25114236_25114545
ENSMUSG00000026969.4_25112172_25114669_2	chr2	+	1545	4	NNC	ENSMUSG00000026969.4	novel	254	2	NA	NA	802	2377	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3944	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACCGACGCTCTGCCAAC	NA	False	NA	NA	False	NA	NA	NA	25112171	25114669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_25113381_25113945_25114049_25114135_25114245_25114545
ENSMUSG00000026969.4_25112172_25114669_3	chr2	+	1546	4	NNC	ENSMUSG00000026969.4	novel	254	2	NA	NA	802	2377	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5578	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACCGACGCTCTGCCAAC	NA	False	NA	NA	False	NA	NA	NA	25112171	25114669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_25113381_25113952_25114057_25114135_25114245_25114545
ENSMUSG00000026969.4_25112172_25114669_4	chr2	+	1553	4	NIC	ENSMUSG00000026969.4	novel	254	2	NA	NA	802	2377	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	8574	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACCGACGCTCTGCCAAC	NA	False	NA	NA	False	NA	NA	NA	25112171	25114669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_25113381_25113945_25114057_25114135_25114245_25114545
ENSMUSG00000026972.16_24815364_24825175_1	chr2	-	1466	7	NIC	ENSMUSG00000026972.16	novel	1666	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_6	24.8445164976097	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCGAGTGGCTGGCCT	9406	False	NA	-31	True	AATAAA	-17	NA	24825175	24815363	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_24815689_24815767_24816207_24816283_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24825039
ENSMUSG00000026972.16_24815364_24825175_2	chr2	-	1216	8	NNC	ENSMUSG00000026972.16	novel	1666	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	26.6182383384945	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCGAGTGGCTGGCCT	9406	False	NA	-31	True	AATAAA	-17	NA	24825175	24815363	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_24815689_24815767_24815846_24816283_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
ENSMUSG00000026974.12_24843256_24849428_1	chr2	+	813	3	ISM	ENSMUSG00000026974.12	ENSMUST00000148042.3	1103	6	3034	-150	3034	150	3prime_fragment	FALSE	canonical	3	887	junction_2	9.5	384	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGTCGTGTAGTCAAGCT	NA	False	NA	37	True	NA	NA	NA	24843255	24849428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_24843389_24848047_24848229_24848929
ENSMUSG00000026975.11_24852478_24862175_1	chr2	+	1785	9	NIC	ENSMUSG00000026975.11	novel	1666	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	33.0924368247489	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852477	24862175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_24852823_24853034_24853169_24853467_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ENSMUSG00000026975.11_24852478_24862175_2	chr2	+	1563	7	NIC	ENSMUSG00000026975.11	novel	2296	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	44.02556075736	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852477	24862175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_24852823_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ENSMUSG00000026977.18_60040257_60078317_1	chr2	+	2330	10	FSM	ENSMUSG00000026977.18	ENSMUST00000102748.11	3594	10	26	1238	0	0	multi-exon	FALSE	canonical	3	327	junction_5	27.2519112479596	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGATCTGTGAACATGTT	NA	False	NA	NA	False	AAGAAA	-11	NA	60040256	60078317	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
ENSMUSG00000026980.16_60205211_60213647_1	chr2	-	1529	2	ISM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	-72	81107	0	-81107	5prime_fragment	FALSE	canonical	3	663	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTACTTTACTCTAAGAATT	NA	False	NA	NA	False	NA	NA	NA	60213647	60205210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_60206574_60213481
ENSMUSG00000026987.17_59799003_59880988_1	chr2	-	1205	7	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39426	10016	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_4	34.7407061912487	74	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTTTGACCAGTGAATTG	1596	False	NA	NA	False	AATAAA	-20	NA	59880988	59799002	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59831849_59831901_59836386_59836534_59880905
ENSMUSG00000026987.17_60036938_60040145_1	chr2	-	535	3	NNC	ENSMUSG00000026987.17	novel	406	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	1	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTTTAATTGACTTCTG	9150	False	NA	NA	False	AATAAA	-16	NA	60040145	60036937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_60037308_60038462_60038539_60040056
ENSMUSG00000026988.16_59682708_59712930_1	chr2	-	2055	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	4	junction_10	23.1810267244572	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712930	59682707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708876_59712744
ENSMUSG00000026988.16_59682708_59712930_2	chr2	-	2111	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_10	22.0773639730834	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712930	59682707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712744
ENSMUSG00000026988.16_59682839_59712930_1	chr2	-	1943	11	FSM	ENSMUSG00000026988.16	ENSMUST00000028368.14	2072	11	-2	131	0	-131	multi-exon	FALSE	canonical	3	14	junction_10	21.0228447171167	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGTCAATTATCTTTAA	NA	False	NA	NA	False	NA	NA	NA	59712930	59682838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712744
ENSMUSG00000026999.15_80469176_80489026_1	chr2	+	1323	9	FSM	ENSMUSG00000026999.15	ENSMUST00000028382.13	1559	9	16	220	0	-220	multi-exon	FALSE	canonical	3	149	junction_4	57.0169930810105	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTCTCACTGGCTTTCA	NA	False	NA	15	True	ATTAAA	-15	NA	80469175	80489026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_80469277_80472968_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80485136_80485207_80486292_80486422_80487532_80487698_80488664
ENSMUSG00000026999.15_80469176_80489458_1	chr2	+	1755	9	FSM	ENSMUSG00000026999.15	ENSMUST00000028382.13	1559	9	16	-212	0	208	multi-exon	FALSE	canonical	3	149	junction_4	57.0169930810105	1610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAGTTTGTTAATATG	NA	False	NA	NA	False	AATAAA	-16	NA	80469175	80489458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_80469277_80472968_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80485136_80485207_80486292_80486422_80487532_80487698_80488664
ENSMUSG00000027001.11_80447580_80461533_1	chr2	+	529	4	NIC	ENSMUSG00000027001.11	novel	1324	4	NA	NA	5	365	combination_of_known_junctions	FALSE	canonical	3	15	junction_2	40.7948798530186	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTTGTTATTTCAG	NA	False	NA	4	True	AATACA	-14	NA	80447579	80461533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_80447629_80451537_80451585_80454669_80454705_80461135
ENSMUSG00000027001.11_80447580_80461533_3	chr2	+	647	4	FSM	ENSMUSG00000027001.11	ENSMUST00000147290.8	1324	4	136	541	5	365	multi-exon	FALSE	canonical	3	18	junction_1	41.0446910899164	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTTGTTATTTCAG	NA	False	NA	4	True	AATACA	-14	NA	80447579	80461533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_80447629_80451537_80451585_80454551_80454705_80461135
ENSMUSG00000027001.11_80447580_80461533_4	chr2	+	969	4	FSM	ENSMUSG00000027001.11	ENSMUST00000028384.5	1632	4	191	472	5	365	multi-exon	FALSE	canonical	3	97	junction_1	4.10960933531265	809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTTGTTATTTCAG	NA	False	NA	4	True	AATACA	-14	NA	80447579	80461533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_80447951_80451537_80451585_80454551_80454705_80461135
ENSMUSG00000027001.11_80447875_80461533_1	chr2	+	674	4	FSM	ENSMUSG00000027001.11	ENSMUST00000028384.5	1632	4	486	472	265	365	multi-exon	FALSE	canonical	3	97	junction_1	4.10960933531265	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTTGTTATTTCAG	NA	False	NA	4	True	AATACA	-14	NA	80447874	80461533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_80447951_80451537_80451585_80454551_80454705_80461135
ENSMUSG00000027006.14_80146055_80183762_1	chr2	+	3172	23	FSM	ENSMUSG00000027006.14	ENSMUST00000028392.8	4042	23	245	625	245	-625	multi-exon	FALSE	canonical	3	242	junction_19	21.5763108543292	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTACTACTGTATAGACAGA	NA	False	NA	6	True	AATAAA	-22	NA	80146054	80183762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_80146150_80147592_80147944_80149503_80149667_80151587_80151639_80155003_80155087_80155338_80155471_80155961_80156056_80157001_80157080_80158415_80158460_80161612_80161751_80163272_80163363_80164069_80164184_80165796_80165912_80170816_80170945_80171155_80171273_80174260_80174363_80175267_80175424_80176855_80176990_80177687_80177742_80177991_80178140_80179612_80179733_80180972_80181078_80183202
ENSMUSG00000027006.14_80146055_80183976_1	chr2	+	3386	23	FSM	ENSMUSG00000027006.14	ENSMUST00000028392.8	4042	23	245	411	245	-411	multi-exon	FALSE	canonical	3	242	junction_19	21.5763108543292	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTTGTTGGTTTTGTTT	NA	False	NA	9	True	CATAAA	-13	NA	80146054	80183976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_80146150_80147592_80147944_80149503_80149667_80151587_80151639_80155003_80155087_80155338_80155471_80155961_80156056_80157001_80157080_80158415_80158460_80161612_80161751_80163272_80163363_80164069_80164184_80165796_80165912_80170816_80170945_80171155_80171273_80174260_80174363_80175267_80175424_80176855_80176990_80177687_80177742_80177991_80178140_80179612_80179733_80180972_80181078_80183202
ENSMUSG00000027006.14_80146055_80184391_1	chr2	+	3801	23	FSM	ENSMUSG00000027006.14	ENSMUST00000028392.8	4042	23	245	-4	245	4	multi-exon	FALSE	canonical	3	242	junction_19	21.5763108543292	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTTGAAGATGATTGTT	NA	False	NA	16	True	AATAAA	-22	NA	80146054	80184391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_80146150_80147592_80147944_80149503_80149667_80151587_80151639_80155003_80155087_80155338_80155471_80155961_80156056_80157001_80157080_80158415_80158460_80161612_80161751_80163272_80163363_80164069_80164184_80165796_80165912_80170816_80170945_80171155_80171273_80174260_80174363_80175267_80175424_80176855_80176990_80177687_80177742_80177991_80178140_80179612_80179733_80180972_80181078_80183202
ENSMUSG00000027010.17_71105034_71109929_1	chr2	-	984	4	ISM	ENSMUSG00000027010.17	ENSMUST00000147553.2	994	8	15060	-387	3204	0	3prime_fragment	FALSE	canonical	3	129	junction_2	6.23609564462324	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTTCAGTTTGTTTTCC	NA	False	NA	48	True	NA	NA	NA	71109929	71105033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859
ENSMUSG00000027010.17_71160084_71197887_1	chr2	-	635	5	NIC	ENSMUSG00000027010.17	novel	550	3	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	8.57321409974112	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGCTCTAGAATTTCTA	NA	False	NA	NA	False	AATAAA	-17	NA	71197887	71160083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_71160375_71163948_71164065_71174233_71174377_71196870_71196925_71197856
ENSMUSG00000027011.15_78699678_78750927_1	chr2	+	1252	6	FSM	ENSMUSG00000027011.15	ENSMUST00000028398.14	2249	6	287	710	0	286	multi-exon	FALSE	canonical	3	305	junction_4	9.66643677887566	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTCTTGTCATAATGTT	NA	False	NA	9	True	AATAAA	-17	NA	78699677	78750927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_78699750_78700800_78701023_78702765_78702817_78744017_78744151_78749030_78749179_78750301
ENSMUSG00000027011.15_78699678_78751064_1	chr2	+	1389	6	FSM	ENSMUSG00000027011.15	ENSMUST00000028398.14	2249	6	287	573	0	423	multi-exon	FALSE	canonical	3	305	junction_4	9.66643677887566	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTGTGTAGAGTTTTTT	NA	False	NA	11	True	ATTAAA	-18	NA	78699677	78751064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_78699750_78700800_78701023_78702765_78702817_78744017_78744151_78749030_78749179_78750301
ENSMUSG00000027011.15_78699678_78751637_1	chr2	+	1962	6	FSM	ENSMUSG00000027011.15	ENSMUST00000028398.14	2249	6	287	0	0	0	multi-exon	FALSE	canonical	3	305	junction_4	9.66643677887566	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGGTCCTAAGTATGGT	NA	False	NA	NA	False	AATAAA	-20	NA	78699677	78751637	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_78699750_78700800_78701023_78702765_78702817_78744017_78744151_78749030_78749179_78750301
ENSMUSG00000027012.16_71042050_71044895_1	chr2	+	253	2	ISM	ENSMUSG00000027012.16	ENSMUST00000141619.8	679	8	-100	32468	0	-15990	5prime_fragment	FALSE	canonical	3	270	junction_1	0	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGTATGTTTGATTCACT	NA	False	NA	34	True	NA	NA	NA	71042049	71044895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_71042190_71044782
ENSMUSG00000027012.16_71042328_71044895_1	chr2	+	204	2	ISM	ENSMUSG00000027012.16	ENSMUST00000149735.2	2248	4	-20	15990	0	-15990	5prime_fragment	FALSE	canonical	3	502	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGTATGTTTGATTCACT	NA	False	NA	34	True	NA	NA	NA	71042327	71044895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_71042419_71044782
ENSMUSG00000027012.16_71042328_71093203_1	chr2	+	2037	16	FSM	ENSMUSG00000027012.16	ENSMUST00000081710.12	2631	16	150	444	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.1836893389456	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCATGGATAATCTGGGTT	NA	False	NA	NA	False	ATTAAA	-18	NA	71042327	71093203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ENSMUSG00000027012.16_71042328_71093402_1	chr2	+	2236	16	FSM	ENSMUSG00000027012.16	ENSMUST00000081710.12	2631	16	150	245	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.1836893389456	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATTTCTAAAGCACAGAT	NA	False	NA	NA	False	NA	NA	NA	71042327	71093402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ENSMUSG00000027012.16_71042328_71093638_2	chr2	+	2472	16	FSM	ENSMUSG00000027012.16	ENSMUST00000081710.12	2631	16	150	9	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.1836893389456	740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCAAATTTTCACTTTT	NA	False	NA	15	True	AATAAA	-17	NA	71042327	71093638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ENSMUSG00000027018.12_71219604_71271859_1	chr2	+	1462	11	NNC	ENSMUSG00000027018.12	novel	1576	11	NA	NA	0	-107	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	663.539328148679	18890	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGCCCACTGCTTTCTT	5118	False	NA	17	True	AATAAA	-18	NA	71219603	71271859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251561_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
ENSMUSG00000027018.12_71219604_71271859_2	chr2	+	1461	11	NNC	ENSMUSG00000027018.12	novel	1576	11	NA	NA	0	-107	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	664.361535611447	30946	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGCCCACTGCTTTCTT	5118	False	NA	17	True	AATAAA	-18	NA	71219603	71271859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_71219649_71220254_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
ENSMUSG00000027018.12_71219604_71271859_3	chr2	+	1289	10	NIC	ENSMUSG00000027018.12	novel	1576	11	NA	NA	0	-107	combination_of_known_splicesites	FALSE	canonical	3	214	junction_4	625.456277892832	1224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGCCCACTGCTTTCTT	5118	False	NA	17	True	AATAAA	-18	NA	71219603	71271859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
ENSMUSG00000027018.12_71220246_71271966_1	chr2	+	1525	10	NNC	ENSMUSG00000027018.12	novel	1576	11	NA	NA	642	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	699.425337308519	16234	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAACTTTGCATTTGAGTT	5760	False	NA	59	True	GATAAA	-16	NA	71220245	71271966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251561_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
ENSMUSG00000027030.16_68042084_68196513_1	chr2	-	936	11	FSM	ENSMUSG00000027030.16	ENSMUST00000126663.8	2578	11	350	1292	350	0	multi-exon	FALSE	canonical	3	41	junction_5	6.62117814289874	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAGCACTCCGAGTTCT	NA	False	NA	NA	False	NA	NA	NA	68196513	68042083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_68042338_68051247_68051313_68093578_68093648_68097382_68097436_68137384_68137453_68139335_68139399_68144707_68144738_68144824_68144948_68189157_68189224_68189329_68189379_68196417
ENSMUSG00000027067.17_84867799_84877453_1	chr2	+	2983	16	ISM	ENSMUSG00000027067.17	ENSMUST00000077798.13	2739	17	221	0	0	0	3prime_fragment	FALSE	canonical	3	1260	junction_6	129.702223059848	1897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	23	True	AATAAA	-19	NA	84867798	84877453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
ENSMUSG00000027067.17_84876030_84877453_1	chr2	+	738	3	ISM	ENSMUSG00000027067.17	ENSMUST00000145097.2	679	4	435	-391	331	0	3prime_fragment	FALSE	canonical	3	1634	junction_1	29	668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	23	True	AATAAA	-19	NA	84876029	84877453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_84876117_84876596_84876784_84876989
ENSMUSG00000027074.15_84766961_84788853_1	chr2	+	2425	13	NIC	ENSMUSG00000027074.15	novel	2621	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	9.67923034130297	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGCTTCTACCTCTTTG	NA	False	NA	9	True	AATAAA	-20	NA	84766960	84788853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_84766989_84767866_84768214_84768566_84768697_84771324_84771372_84774585_84774663_84774861_84774955_84777183_84777324_84778678_84778777_84780316_84780536_84780764_84780885_84785774_84785962_84786615_84786731_84788029
ENSMUSG00000027074.15_84767033_84771525_1	chr2	+	839	4	ISM	ENSMUSG00000027074.15	ENSMUST00000090726.6	2583	13	25	17328	0	2851	5prime_fragment	FALSE	canonical	3	24	junction_1	7.58653778449403	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTCCTGTGGGGTTTTT	NA	False	NA	NA	False	ATTAAA	-2	NA	84767032	84771525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_84767194_84767866_84768214_84768566_84768697_84771324
ENSMUSG00000027076.11_84657341_84660457_1	chr2	+	590	3	FSM	ENSMUSG00000027076.11	ENSMUST00000028470.10	690	3	0	100	0	0	multi-exon	FALSE	canonical	3	373	junction_1	17.5	699	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTAGAGCTCTCCTGGCT	6417	False	NA	-90	True	NA	NA	NA	84657340	84660457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_84657492_84657942_84658058_84660133
ENSMUSG00000027077.8_84641520_84652882_1	chr2	-	1647	8	FSM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	114	0	114	0	multi-exon	FALSE	canonical	2	2	junction_5	63.4909603078763	1576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	NA	False	NA	-19	True	AATAAA	-19	NA	84652882	84641519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227_84646384_84647321_84647368_84647467_84647601_84648619_84649255_84652836
ENSMUSG00000027078.15_84629178_84640347_1	chr2	+	1381	4	FSM	ENSMUSG00000027078.15	ENSMUST00000102642.9	1560	4	6	173	0	-173	multi-exon	FALSE	canonical	3	170	junction_3	17.1075032271418	2662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTCTCGTGGGTGAT	NA	False	NA	NA	False	NA	NA	NA	84629177	84640347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_84629277_84633122_84633219_84636680_84636868_84639348
ENSMUSG00000027079.16_84553466_84557588_1	chr2	-	1806	3	FSM	ENSMUSG00000027079.16	ENSMUST00000028475.9	1912	3	106	0	-2	0	multi-exon	FALSE	canonical	3	238	junction_1	30.5	1648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTATGATTCTTTTTTT	NA	False	NA	-21	True	AATAAA	-17	NA	84557588	84553465	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84554562_84555872_84556501_84557506
ENSMUSG00000027080.7_84508746_84517438_1	chr2	+	938	5	FSM	ENSMUSG00000027080.7	ENSMUST00000102645.4	2059	5	0	1121	0	-405	multi-exon	FALSE	canonical	3	447	junction_3	24.2525771826418	760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTTTTTTATGGTTATG	3357	False	NA	-49	True	AATACA	-15	NA	84508745	84517438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_84509006_84515534_84515792_84515946_84516044_84516534_84516630_84517209
ENSMUSG00000027082.16_84263204_84304353_1	chr2	-	1327	9	FSM	ENSMUSG00000027082.16	ENSMUST00000028487.10	1492	9	165	0	165	0	multi-exon	FALSE	canonical	3	41	junction_8	57.5972004527998	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATCATGTTGACTGTCC	NA	False	NA	-7	True	AATAAA	-14	NA	84304353	84263203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84304286
ENSMUSG00000027082.16_84263204_84307107_1	chr2	-	1283	9	NIC	ENSMUSG00000027082.16	novel	1492	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_8	40.1230529122598	779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATCATGTTGACTGTCC	NA	False	NA	-7	True	AATAAA	-14	NA	84307107	84263203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307084
ENSMUSG00000027082.16_84263204_84307107_2	chr2	-	1333	9	NIC	ENSMUSG00000027082.16	novel	1492	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	91	junction_8	41.6863286941894	825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATCATGTTGACTGTCC	NA	False	NA	-7	True	AATAAA	-14	NA	84307107	84263203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307034
ENSMUSG00000027082.16_84263395_84307107_1	chr2	-	1092	9	NIC	ENSMUSG00000027082.16	novel	1492	9	NA	NA	0	-191	combination_of_known_junctions	FALSE	canonical	3	96	junction_8	40.1230529122598	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCCTATACGGTGCTTCT	NA	False	NA	NA	False	ATTAAA	-23	NA	84307107	84263394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307084
ENSMUSG00000027091.15_83474881_83494583_1	chr2	+	1626	10	FSM	ENSMUSG00000027091.15	ENSMUST00000081591.7	2111	10	102	383	0	-383	multi-exon	FALSE	canonical	3	620	junction_6	95.2257875645245	719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATTGTCGTTGTAACTG	NA	False	NA	NA	False	ATTAAA	-17	NA	83474880	83494583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352_83488506_83488873_83488966_83490401_83490585_83491490_83491638_83491776_83491879_83492492_83492617_83494163
ENSMUSG00000027091.15_83474881_83494966_1	chr2	+	2009	10	FSM	ENSMUSG00000027091.15	ENSMUST00000081591.7	2111	10	102	0	0	0	multi-exon	FALSE	canonical	3	620	junction_6	95.2257875645245	5925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGGCCTTTTTCTTTTA	NA	False	NA	28	True	AATAAA	-36	NA	83474880	83494966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352_83488506_83488873_83488966_83490401_83490585_83491490_83491638_83491776_83491879_83492492_83492617_83494163
ENSMUSG00000027108.16_72923544_73044707_1	chr2	-	1685	11	NNC	ENSMUSG00000027108.16	novel	2175	11	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	129.019223373883	3704	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGGTGTGTTTGGGGA	NA	False	NA	-3	True	AATAAA	-16	NA	73044707	72923543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044636
ENSMUSG00000027108.16_72923544_73044707_2	chr2	-	1681	11	NNC	ENSMUSG00000027108.16	novel	2175	11	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	129.019223373883	3607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGGTGTGTTTGGGGA	NA	False	NA	-3	True	AATAAA	-16	NA	73044707	72923543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043290_73044625
ENSMUSG00000027108.16_72923970_73044707_2	chr2	-	1259	11	NNC	ENSMUSG00000027108.16	novel	2175	11	NA	NA	-30	-424	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	129.019223373883	1260	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTCAGTTATTGCTAAG	NA	False	NA	-26	True	AATACA	-22	NA	73044707	72923969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044636
ENSMUSG00000027108.16_72986961_73044707_1	chr2	-	748	5	ISM	ENSMUSG00000027108.16	ENSMUST00000100015.6	905	8	-30	19090	-30	-19090	5prime_fragment	FALSE	canonical	3	405	junction_3	7.56637297521078	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTTCTTTTTTGTATTT	NA	False	NA	NA	False	AATAAA	-18	NA	73044707	72986960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
ENSMUSG00000027111.17_71676321_71687115_1	chr2	+	1250	4	ISM	ENSMUSG00000027111.17	ENSMUST00000112101.8	4156	26	59037	0	-3052	0	3prime_fragment	FALSE	canonical	3	515	junction_3	29.2612751298063	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCTTTATAAACATGCAAG	NA	False	NA	NA	False	NA	NA	NA	71676320	71687115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_71676428_71676507_71676607_71679724_71679851_71686197
ENSMUSG00000027115.15_109142679_109172092_1	chr2	+	1574	6	NNC	ENSMUSG00000027115.15	novel	3369	17	NA	NA	20311	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	149.324612840616	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTTGGTTTTCCTGTTTT	NA	False	NA	25	True	ATTAAA	-16	NA	109142678	109172092	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_109142797_109148219_109148456_109163600_109164013_109164665_109164774_109168911_109169022_109171502
ENSMUSG00000027122.16_106794774_106804742_1	chr2	-	1929	4	NNC	ENSMUSG00000027122.16	novel	1363	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	134	junction_3	55.0292851327566	228	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACATAAACTTTAATTTT	NA	False	NA	NA	False	AATAAA	-13	NA	106804742	106794773	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_106795992_106797444_106797573_106799416_106799904_106804646
ENSMUSG00000027130.16_112193356_112198165_1	chr2	+	916	5	NNC	ENSMUSG00000027130.16	novel	4464	4	NA	NA	6816	4657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	707	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTCCTCCCGGCCCAC	NA	False	NA	NA	False	NA	NA	NA	112193355	112198165	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_112193700_112194136_112194298_112194496_112194651_112197746_112197862_112198023
ENSMUSG00000027130.16_112193356_112198365_1	chr2	+	906	5	NNC	ENSMUSG00000027130.16	novel	4464	4	NA	NA	6816	4857	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	897	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGCATAATTGAACGTCAC	NA	False	NA	NA	False	NA	NA	NA	112193355	112198365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_112193700_112194136_112194298_112194496_112194581_112197746_112197862_112198163
ENSMUSG00000027130.16_112193356_112198365_2	chr2	+	1208	6	NNC	ENSMUSG00000027130.16	novel	4464	4	NA	NA	6816	4857	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4824	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGCATAATTGAACGTCAC	NA	False	NA	NA	False	NA	NA	NA	112193355	112198365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_112193700_112194136_112194298_112194496_112194651_112195123_112195356_112197746_112197862_112198163
ENSMUSG00000027130.16_112193356_112198365_3	chr2	+	861	4	NIC	ENSMUSG00000027130.16	novel	4464	4	NA	NA	6816	4857	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	311	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGCATAATTGAACGTCAC	NA	False	NA	NA	False	NA	NA	NA	112193355	112198365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_112193700_112194136_112194298_112194496_112194651_112198163
ENSMUSG00000027130.16_112193356_112198365_4	chr2	+	791	4	NNC	ENSMUSG00000027130.16	novel	4464	4	NA	NA	6816	4857	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	121	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGCATAATTGAACGTCAC	NA	False	NA	NA	False	NA	NA	NA	112193355	112198365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_112193700_112194136_112194298_112194496_112194581_112198163
ENSMUSG00000027130.16_112193356_112198365_5	chr2	+	967	5	NNC	ENSMUSG00000027130.16	novel	4464	4	NA	NA	6816	4857	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6773	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGCATAATTGAACGTCAC	NA	False	NA	NA	False	NA	NA	NA	112193355	112198365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_112193700_112194136_112194298_112194496_112194651_112197746_112197853_112198163
ENSMUSG00000027130.16_112193356_112209523_1	chr2	+	1127	6	NNC	ENSMUSG00000027130.16	novel	4464	4	NA	NA	6816	16015	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6941	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTGGGTGGGGCCCGGCT	NA	False	NA	NA	False	NA	NA	NA	112193355	112209523	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_112193700_112194136_112194298_112194496_112194651_112197746_112197862_112198163_112198404_112209410
ENSMUSG00000027132.4_112209571_112241781_1	chr2	+	1111	10	NNC	ENSMUSG00000027132.4	novel	2886	10	NA	NA	0	-2804	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_9	161.88984213858	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTGTATAGTGCATTC	NA	False	NA	NA	False	AATAAA	-17	NA	112209570	112241781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418_112236699_112237930_112238050_112238727_112238779_112238868_112238959_112239485_112239576_112240487_112240582_112241683
ENSMUSG00000027132.4_112209571_112243271_1	chr2	+	1557	10	FSM	ENSMUSG00000027132.4	ENSMUST00000028552.4	2886	10	15	1314	0	-1314	multi-exon	FALSE	canonical	3	424	junction_7	47.4201082523719	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGTACAAATGCCTTA	NA	False	NA	NA	False	ATTAAA	-19	NA	112209570	112243271	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418_112236699_112237930_112238050_112238727_112238779_112238868_112238959_112239485_112239576_112240487_112240582_112242727
ENSMUSG00000027132.4_112209571_112243680_1	chr2	+	1966	10	FSM	ENSMUSG00000027132.4	ENSMUST00000028552.4	2886	10	15	905	0	-905	multi-exon	FALSE	canonical	3	424	junction_7	47.4201082523719	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGCTTTTTTAATTCT	NA	False	NA	NA	False	AGTAAA	-18	NA	112209570	112243680	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418_112236699_112237930_112238050_112238727_112238779_112238868_112238959_112239485_112239576_112240487_112240582_112242727
ENSMUSG00000027133.4_112092271_112092801_1	chr2	+	296	2	FSM	ENSMUSG00000027133.4	ENSMUST00000028553.4	1109	2	0	813	0	-813	multi-exon	FALSE	canonical	3	3938	junction_1	0	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTTAATCTTTTACGCTG	NA	False	NA	NA	False	NA	NA	NA	112092270	112092801	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_112092423_112092657
ENSMUSG00000027133.4_112092271_112093011_1	chr2	+	505	2	NNC	ENSMUSG00000027133.4	novel	1109	2	NA	NA	0	-603	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	14318	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCATTTTGTGTGTTGTTG	NA	False	NA	24	True	ATTAAA	-18	NA	112092270	112093011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_112092423_112092658
ENSMUSG00000027133.4_112092271_112093011_2	chr2	+	506	2	FSM	ENSMUSG00000027133.4	ENSMUST00000028553.4	1109	2	0	603	0	-603	multi-exon	FALSE	canonical	3	3938	junction_1	0	15411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCATTTTGTGTGTTGTTG	NA	False	NA	24	True	ATTAAA	-18	NA	112092270	112093011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_112092423_112092657
ENSMUSG00000027160.17_109848162_109875009_1	chr2	+	1413	6	NNC	ENSMUSG00000027160.17	novel	2070	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	196.317497946566	1155	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTGTACTCTGTTATT	NA	False	NA	33	True	AATAAA	-19	NA	109848161	109875009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_109848560_109852226_109852360_109862676_109862785_109870923_109871078_109871605_109871748_109874531
ENSMUSG00000027160.17_109848162_109875009_2	chr2	+	1418	6	FSM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	0	652	0	0	multi-exon	FALSE	canonical	3	423	junction_3	38.5455574612691	1686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTGTACTCTGTTATT	NA	False	NA	33	True	AATAAA	-19	NA	109848161	109875009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_109848560_109852226_109852360_109862676_109862785_109870918_109871078_109871605_109871748_109874531
ENSMUSG00000027160.17_109848162_109875194_1	chr2	+	1598	6	NNC	ENSMUSG00000027160.17	novel	2070	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	196.317497946566	1611	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTTTGCATTTATTTAT	NA	False	NA	NA	False	AGTAAA	-28	NA	109848161	109875194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_109848560_109852226_109852360_109862676_109862785_109870923_109871078_109871605_109871748_109874531
ENSMUSG00000027160.17_109848162_109875194_2	chr2	+	1603	6	FSM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	0	467	0	0	multi-exon	FALSE	canonical	3	423	junction_3	38.5455574612691	2075	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTTTGCATTTATTTAT	NA	False	NA	NA	False	AGTAAA	-28	NA	109848161	109875194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_109848560_109852226_109852360_109862676_109862785_109870918_109871078_109871605_109871748_109874531
ENSMUSG00000027162.8_109721198_109728066_1	chr2	+	946	5	FSM	ENSMUSG00000027162.8	ENSMUST00000028583.8	4228	5	0	3282	0	983	multi-exon	FALSE	canonical	3	354	junction_4	22.349496638627	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTTTTTAAAAAGAGGTT	NA	False	NA	NA	False	ATTAAA	-21	NA	109721197	109728066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580_109726791_109727590
ENSMUSG00000027162.8_109721198_109728476_1	chr2	+	1356	5	FSM	ENSMUSG00000027162.8	ENSMUST00000028583.8	4228	5	0	2872	0	1393	multi-exon	FALSE	canonical	3	354	junction_4	22.349496638627	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTATGTCATAAATTATAC	NA	False	NA	NA	False	ATTAAA	-18	NA	109721197	109728476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580_109726791_109727590
ENSMUSG00000027163.14_101716608_101731991_1	chr2	+	1174	5	NNC	ENSMUSG00000027163.14	novel	1191	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	77.5467600870597	874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGCTGGTCGTGGTTCTT	NA	False	NA	29	True	AATAAA	-25	NA	101716607	101731991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_101716665_101725479_101725606_101727384_101727525_101730185_101730318_101731272
ENSMUSG00000027164.9_101508774_101512579_1	chr2	+	611	3	NNC	ENSMUSG00000027164.9	novel	6169	8	NA	NA	0	-4001	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	43	43	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTGCTGAGTCATTGGAG	NA	False	NA	NA	False	AATAAA	-18	NA	101508773	101512579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_101508966_101511169_101511373_101512363
ENSMUSG00000027165.17_101392469_101459354_1	chr2	-	797	6	NIC	ENSMUSG00000027165.17	novel	2273	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	59.0945005901564	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCCTCTGTGGAAATGTA	NA	False	NA	-20	True	AATAAA	-15	NA	101459354	101392468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_101392700_101406356_101406497_101413865_101413933_101415588_101415661_101416656_101416815_101459225
ENSMUSG00000027165.17_101392469_101459354_2	chr2	-	901	7	NIC	ENSMUSG00000027165.17	novel	2273	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	51.8384241872978	629	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCCTCTGTGGAAATGTA	NA	False	NA	-20	True	AATAAA	-15	NA	101459354	101392468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_101392700_101406404_101406497_101413865_101413933_101415588_101415661_101416656_101416815_101440868_101441021_101459225
ENSMUSG00000027166.15_105796670_105833608_1	chr2	-	1295	5	FSM	ENSMUSG00000027166.15	ENSMUST00000102555.11	1197	5	286	-384	0	384	multi-exon	TRUE	canonical	3	201	junction_2	6.37867541108654	1782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGAGCCCAGTTCTGCCC	NA	False	NA	NA	False	NA	NA	NA	105833608	105796669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_105797440_105800792_105800862_105811326_105811466_105832273_105832421_105833438
ENSMUSG00000027166.15_105797054_105833608_1	chr2	-	842	4	NIC	ENSMUSG00000027166.15	novel	1197	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	89.3395520223577	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGAGTATTCTTTATAG	NA	False	NA	1	True	TATAAA	-19	NA	105833608	105797053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_105797440_105811326_105811466_105832273_105832421_105833438
ENSMUSG00000027166.15_105797054_105833608_2	chr2	-	911	5	FSM	ENSMUSG00000027166.15	ENSMUST00000102555.11	1197	5	286	0	0	0	multi-exon	FALSE	canonical	3	201	junction_2	6.37867541108654	1561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGAGTATTCTTTATAG	NA	False	NA	1	True	TATAAA	-19	NA	105833608	105797053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_105797440_105800792_105800862_105811326_105811466_105832273_105832421_105833438
ENSMUSG00000027166.15_105797129_105833547_1	chr2	-	775	5	FSM	ENSMUSG00000027166.15	ENSMUST00000102555.11	1197	5	347	75	0	0	multi-exon	FALSE	canonical	3	201	junction_2	6.37867541108654	661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACAACTTTTGTTTTCTCT	NA	False	NA	-74	True	NA	NA	NA	105833547	105797128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_105797440_105800792_105800862_105811326_105811466_105832273_105832421_105833438
ENSMUSG00000027167.12_105532784_105734850_1	chr2	-	1541	9	NIC	ENSMUSG00000027167.12	novel	3048	10	NA	NA	-22	-1412	combination_of_known_splicesites	FALSE	canonical	2	7	junction_8	69.1718873531726	703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTGCCTTAGAGTTG	NA	False	NA	NA	False	AATAAA	-21	NA	105734850	105532783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_105533207_105622560_105622668_105624861_105624971_105639610_105639800_105644610_105644696_105662475_105662616_105672576_105672706_105696303_105696426_105734613
ENSMUSG00000027167.12_105532784_105734850_2	chr2	-	1577	10	FSM	ENSMUSG00000027167.12	ENSMUST00000122965.8	3048	10	59	1412	-22	-1412	multi-exon	FALSE	canonical	3	175	junction_4	20.3548762623191	720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTGCCTTAGAGTTG	NA	False	NA	NA	False	AATAAA	-21	NA	105734850	105532783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_105533207_105622560_105622668_105624861_105624971_105639610_105639800_105644610_105644696_105662475_105662616_105672576_105672706_105696303_105696426_105727246_105727283_105734613
ENSMUSG00000027167.12_105532933_105734850_1	chr2	-	1428	10	FSM	ENSMUSG00000027167.12	ENSMUST00000122965.8	3048	10	59	1561	-22	-1561	multi-exon	FALSE	canonical	3	175	junction_4	20.3548762623191	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTTGTTTCATGATT	NA	False	NA	-22	True	AATACA	-30	NA	105734850	105532932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_105533207_105622560_105622668_105624861_105624971_105639610_105639800_105644610_105644696_105662475_105662616_105672576_105672706_105696303_105696426_105727246_105727283_105734613
ENSMUSG00000027170.13_104830001_104847388_1	chr2	-	1245	11	NNC	ENSMUSG00000027170.13	novel	1283	11	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	678.251103943075	4053	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGACTAATCTAGCTAATT	2677	False	NA	-16	True	AGTAAA	-17	NA	104847388	104830000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_104830187_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843286_104843538_104843667_104844089_104844229_104845114_104845248_104847290
ENSMUSG00000027170.13_104830001_104847425_1	chr2	-	1277	11	NNC	ENSMUSG00000027170.13	novel	1283	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	684.2597752316	3907	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGACTAATCTAGCTAATT	2640	False	NA	-16	True	AGTAAA	-17	NA	104847425	104830000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_104830181_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
ENSMUSG00000027173.8_104552129_104573223_1	chr2	-	1282	7	NIC	ENSMUSG00000027173.8	novel	1801	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_6	54.5588367422425	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTACTCAGAATGGTGTG	NA	False	NA	-9	True	AATAAA	-24	NA	104573223	104552128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_104552464_104553220_104553300_104553383_104553510_104553652_104553796_104554914_104555127_104557466_104557657_104573026
ENSMUSG00000027176.9_104420868_104439774_1	chr2	+	739	2	FSM	ENSMUSG00000027176.9	ENSMUST00000137961.2	644	2	-95	0	0	0	multi-exon	FALSE	canonical	3	327	junction_1	0	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAGTGCTTTAGCCTTTT	6900	False	NA	4	True	ATTAAA	-16	NA	104420867	104439774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_104421048_104439215
ENSMUSG00000027176.9_104420868_104439774_2	chr2	+	621	3	FSM	ENSMUSG00000027176.9	ENSMUST00000122900.2	2589	3	-9	1977	0	0	multi-exon	FALSE	canonical	3	327	junction_1	20.5	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAGTGCTTTAGCCTTTT	6900	False	NA	4	True	ATTAAA	-16	NA	104420867	104439774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_104421048_104439215_104439318_104439435
ENSMUSG00000027180.13_103858189_103885487_1	chr2	+	1374	10	FSM	ENSMUSG00000027180.13	ENSMUST00000102565.4	3720	10	-16	2362	0	-2348	multi-exon	FALSE	canonical	3	344	junction_6	33.1058907144937	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGTAGACATTTTGAGG	NA	False	NA	NA	False	NA	NA	NA	103858188	103885487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180
ENSMUSG00000027180.13_103858189_103887840_1	chr2	+	2753	11	NIC	ENSMUSG00000027180.13	novel	4740	11	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	77	junction_10	96.8347045227072	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCTCAACTGTATTTATT	NA	False	NA	5	True	NA	NA	NA	103858188	103887840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103886345
ENSMUSG00000027193.13_94243849_94268481_1	chr2	-	1914	14	FSM	ENSMUSG00000027193.13	ENSMUST00000028617.7	3736	14	0	1822	0	-1822	multi-exon	FALSE	canonical	3	777	junction_1	163.356364354585	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTGTCTGCAGCCTTGA	NA	False	NA	-7	True	NA	NA	NA	94268481	94243848	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_94244127_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
ENSMUSG00000027194.17_94216226_94237024_1	chr2	-	474	2	ISM	ENSMUSG00000027194.17	ENSMUST00000094801.5	3408	20	9	57944	0	-7193	5prime_fragment	FALSE	canonical	3	261	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACATGTATGTAATAATACT	NA	False	NA	NA	False	ATTAAA	-18	NA	94237024	94216225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_94216527_94236851
ENSMUSG00000027201.17_124910044_124930308_1	chr2	-	1665	9	NIC	ENSMUSG00000027201.17	novel	2928	15	NA	NA	623	16504	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	131	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCATGTGAGCAGTCTCC	NA	False	NA	NA	False	NA	NA	NA	124930308	124910043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_124910222_124910691_124910872_124922540_124922625_124922713_124922818_124923146_124923248_124924950_124925235_124927576_124927784_124929339_124929442_124929883
ENSMUSG00000027201.17_124910044_124930308_2	chr2	-	1458	8	NIC	ENSMUSG00000027201.17	novel	2928	15	NA	NA	623	16504	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCATGTGAGCAGTCTCC	NA	False	NA	NA	False	NA	NA	NA	124930308	124910043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_124910222_124910691_124910872_124922540_124922625_124922713_124922818_124923146_124923248_124924950_124925235_124929339_124929442_124929883
ENSMUSG00000027201.17_124929662_124937966_1	chr2	-	1483	3	ISM	ENSMUSG00000027201.17	ENSMUST00000089825.13	1631	15	20827	-1092	-7035	0	3prime_fragment	FALSE	canonical	3	668	junction_1	10	220	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAGCTTACTTGTTGCTT	NA	False	NA	-9	True	NA	NA	NA	124937966	124929661	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_124930958_124937627_124937680_124937831
ENSMUSG00000027203.16_125089402_125099668_1	chr2	+	1090	6	FSM	ENSMUSG00000027203.16	ENSMUST00000051605.9	1950	6	0	860	0	0	multi-exon	TRUE	canonical	3	2160	junction_3	102.069780052668	18040	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACTGGAGAACATGGAGG	NA	False	NA	32	True	AATAAA	-33	NA	125089401	125099668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099061_125099276
ENSMUSG00000027203.16_125089637_125099668_1	chr2	+	855	6	FSM	ENSMUSG00000027203.16	ENSMUST00000051605.9	1950	6	235	860	-183	0	multi-exon	FALSE	canonical	3	2160	junction_3	102.069780052668	17309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACTGGAGAACATGGAGG	NA	False	NA	32	True	AATAAA	-33	NA	125089636	125099668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099061_125099276
ENSMUSG00000027206.14_125672224_125700916_1	chr2	-	3249	13	FSM	ENSMUSG00000027206.14	ENSMUST00000110463.8	3392	13	143	0	0	0	multi-exon	FALSE	canonical	3	314	junction_9	189.484534695813	1481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGGTGTGTGCATGTGA	NA	False	NA	-4	True	AATAAA	-22	NA	125700916	125672223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684653_125686729_125686856_125690126_125690205_125691659_125691774_125700855
ENSMUSG00000027206.14_125673519_125700916_1	chr2	-	1739	11	NNC	ENSMUSG00000027206.14	novel	2073	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	296.558324786205	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGTTCTTGATGTGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	125700916	125673518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125691649_125691774_125700855
ENSMUSG00000027206.14_125673519_125700916_2	chr2	-	1954	13	FSM	ENSMUSG00000027206.14	ENSMUST00000110463.8	3392	13	143	1295	0	0	multi-exon	FALSE	canonical	3	314	junction_9	189.484534695813	1195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGTTCTTGATGTGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	125700916	125673518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684653_125686729_125686856_125690126_125690205_125691659_125691774_125700855
ENSMUSG00000027206.14_125673637_125700916_1	chr2	-	1836	13	FSM	ENSMUSG00000027206.14	ENSMUST00000110463.8	3392	13	143	1413	0	-115	multi-exon	FALSE	canonical	3	314	junction_9	189.484534695813	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCCGTCTATTTCTGT	NA	False	NA	-9	True	TATAAA	-44	NA	125700916	125673636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684653_125686729_125686856_125690126_125690205_125691659_125691774_125700855
ENSMUSG00000027209.18_125708163_125825507_1	chr2	-	1792	10	NIC	ENSMUSG00000027209.18	novel	1858	17	NA	NA	162664	117240	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCGGAAATCCTGCAGGT	5840	False	NA	NA	False	ATTAAA	-29	NA	125825507	125708162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_125708306_125720197_125720287_125729783_125729908_125735272_125735364_125738564_125738712_125771480_125771580_125773172_125773326_125788703_125788915_125817179_125817382_125824974
ENSMUSG00000027222.15_92205651_92211562_1	chr2	+	1073	11	NNC	ENSMUSG00000027222.15	novel	1392	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	69.3025252065175	203	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGTGGCTCTGTGTCATC	NA	False	NA	21	True	AATAAA	-21	NA	92205650	92211562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_92205702_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
ENSMUSG00000027222.15_92205838_92211562_1	chr2	+	1205	11	FSM	ENSMUSG00000027222.15	ENSMUST00000028650.9	1392	11	187	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	17.2869893272368	1079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGTGGCTCTGTGTCATC	NA	False	NA	21	True	AATAAA	-21	NA	92205837	92211562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_92206021_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
ENSMUSG00000027227.8_122065230_122094817_1	chr2	+	1348	9	FSM	ENSMUSG00000027227.8	ENSMUST00000110551.4	2352	9	0	1004	0	-1004	multi-exon	FALSE	canonical	3	111	junction_3	10.5763592507063	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAGTGGGCATGCCTTAA	NA	False	NA	NA	False	AATAAA	-21	NA	122065229	122094817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_122065440_122076962_122076997_122079279_122079445_122083667_122083828_122087322_122087442_122089545_122089612_122090660_122090837_122093668_122093791_122094521
ENSMUSG00000027229.6_122016753_122024210_1	chr2	+	413	4	NNC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	0	-11232	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	31.5629881700422	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGATGATGAAATATTGAT	1945	False	NA	NA	False	ATTAAA	-6	NA	122016752	122024210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_122016834_122016944_122017027_122023712_122023787_122024034
ENSMUSG00000027229.6_122016753_122035633_1	chr2	+	668	5	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	0	191	combination_of_known_splicesites	FALSE	canonical	3	63	junction_2	27.6450718935582	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGGTTCCTTGATTTTG	1945	False	NA	NA	False	AATACA	-16	NA	122016752	122035633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_122016834_122016944_122017027_122023712_122023787_122028866_122028956_122035291
ENSMUSG00000027229.6_122016753_122035752_1	chr2	+	849	6	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	0	310	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	38.5725290848293	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAACTGTAAATGTTTAT	1945	False	NA	NA	False	AATAAA	-14	NA	122016752	122035752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_122016834_122016944_122017027_122021087_122021150_122023712_122023787_122028866_122028956_122035291
ENSMUSG00000027229.6_122016753_122035752_2	chr2	+	989	7	FSM	ENSMUSG00000027229.6	ENSMUST00000028661.6	2115	7	0	1126	0	310	multi-exon	FALSE	canonical	3	14	junction_3	42.3910367884533	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAACTGTAAATGTTTAT	1945	False	NA	NA	False	AATAAA	-14	NA	122016752	122035752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_122016834_122016944_122017027_122018390_122018531_122021087_122021150_122023712_122023787_122028866_122028956_122035291
ENSMUSG00000027229.6_122016753_122035752_3	chr2	+	787	5	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	0	310	combination_of_known_splicesites	FALSE	canonical	3	63	junction_2	27.6450718935582	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAACTGTAAATGTTTAT	1945	False	NA	NA	False	AATAAA	-14	NA	122016752	122035752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_122016834_122016944_122017027_122023712_122023787_122028866_122028956_122035291
ENSMUSG00000027229.6_122016753_122036882_1	chr2	+	1917	5	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	0	4	combination_of_known_splicesites	FALSE	canonical	3	63	junction_2	27.6450718935582	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTCTCAAAGTGATTATA	1945	False	NA	NA	False	AATAAA	-19	NA	122016752	122036882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_122016834_122016944_122017027_122023712_122023787_122028866_122028956_122035291
ENSMUSG00000027229.6_122016753_122036882_2	chr2	+	1979	6	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	38.5725290848293	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTCTCAAAGTGATTATA	1945	False	NA	NA	False	AATAAA	-19	NA	122016752	122036882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_122016834_122016944_122017027_122021087_122021150_122023712_122023787_122028866_122028956_122035291
ENSMUSG00000027229.6_122016753_122052766_1	chr2	+	546	5	NNC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	0	15888	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_4	45.3672514045098	87	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATTAAAGTTACAAAG	1945	False	NA	NA	False	NA	NA	NA	122016752	122052766	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_122016834_122016944_122017027_122023712_122023787_122028866_122028956_122052546
ENSMUSG00000027233.5_121950589_121956606_1	chr2	-	1472	11	ISM	ENSMUSG00000027233.5	ENSMUST00000028665.5	2434	18	60064	0	60064	0	3prime_fragment	FALSE	canonical	3	37	junction_10	25.8797217913949	741	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTGTTGCCAGACTTT	NA	False	NA	0	True	AATAAA	-20	NA	121956606	121950588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_121950930_121951640_121951790_121952264_121952360_121954198_121954340_121954816_121954977_121955099_121955234_121955327_121955382_121955562_121955661_121955750_121955872_121956199_121956354_121956581
ENSMUSG00000027233.5_121950713_121956606_1	chr2	-	1348	11	ISM	ENSMUSG00000027233.5	ENSMUST00000028665.5	2434	18	60064	124	60064	-124	3prime_fragment	FALSE	canonical	3	37	junction_10	25.8797217913949	549	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTGAAACTTGTTTGTA	NA	False	NA	-7	True	ATTAAA	-15	NA	121956606	121950712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_121950930_121951640_121951790_121952264_121952360_121954198_121954340_121954816_121954977_121955099_121955234_121955327_121955382_121955562_121955661_121955750_121955872_121956199_121956354_121956581
ENSMUSG00000027236.9_121859027_121883506_1	chr2	+	1834	8	NNC	ENSMUSG00000027236.9	novel	5413	8	NA	NA	0	-3573	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	447.9122545266	3894	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTGTTATATCCCAAGA	NA	False	NA	NA	False	AATAAA	-23	NA	121859026	121883506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_121859206_121859288_121859387_121871636_121871692_121872062_121872155_121877916_121878032_121880967_121881130_121882222_121882297_121882447
ENSMUSG00000027236.9_121859123_121883506_1	chr2	+	1734	8	NNC	ENSMUSG00000027236.9	novel	5413	8	NA	NA	-10	-3573	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	462.750913735743	3624	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTGTTATATCCCAAGA	NA	False	NA	NA	False	AATAAA	-23	NA	121859122	121883506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_121859206_121859288_121859393_121871636_121871692_121872062_121872155_121877916_121878032_121880967_121881130_121882222_121882297_121882457
ENSMUSG00000027239.15_91760173_91762033_1	chr2	-	836	5	NNC	ENSMUSG00000027239.15	novel	771	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	184	junction_3	1224.54468579142	3770	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762033	91760172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_91760461_91761162_91761325_91761440_91761595_91761716_91761794_91761878
ENSMUSG00000027239.15_91760173_91762033_2	chr2	-	830	5	NNC	ENSMUSG00000027239.15	novel	771	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1277.57453305081	3348	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762033	91760172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_91760461_91761162_91761325_91761440_91761589_91761716_91761794_91761878
ENSMUSG00000027239.15_91760173_91762079_1	chr2	-	722	5	NNC	ENSMUSG00000027239.15	novel	773	5	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	1	34	junction_1	1019.83684356862	6400	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762079	91760172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_91760456_91761162_91761325_91761440_91761600_91761716_91761794_91762038
ENSMUSG00000027239.15_91760173_91762079_2	chr2	-	789	5	NNC	ENSMUSG00000027239.15	novel	771	5	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_4	1319.28522314168	3287	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762079	91760172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_91760461_91761162_91761325_91761440_91761595_91761716_91761794_91761971
ENSMUSG00000027239.15_91760173_91762079_3	chr2	-	716	5	NNC	ENSMUSG00000027239.15	novel	773	5	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1138.49604742397	4812	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762079	91760172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_91760461_91761162_91761325_91761440_91761589_91761716_91761794_91762038
ENSMUSG00000027239.15_91760173_91762079_4	chr2	-	722	5	NNC	ENSMUSG00000027239.15	novel	773	5	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	3	184	junction_3	1066.58860391437	6931	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762079	91760172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_91760461_91761162_91761325_91761440_91761595_91761716_91761794_91762038
ENSMUSG00000027239.15_91760173_91762079_5	chr2	-	882	5	NNC	ENSMUSG00000027239.15	novel	773	5	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	3	184	junction_3	1224.54468579142	4014	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762079	91760172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_91760461_91761162_91761325_91761440_91761595_91761716_91761794_91761878
ENSMUSG00000027239.15_91760173_91762368_1	chr2	-	780	5	FSM	ENSMUSG00000027239.15	ENSMUST00000028672.13	1054	5	274	0	-243	0	multi-exon	FALSE	canonical	3	113	junction_4	1100.19691419309	2981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762368	91760172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91762274
ENSMUSG00000027242.15_121337236_121348448_1	chr2	+	759	3	ISM	ENSMUSG00000027242.15	ENSMUST00000099473.10	2315	11	-17	14822	0	-14822	5prime_fragment	FALSE	canonical	3	43	junction_1	7	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGAAACTGAGAGTGAG	NA	False	NA	NA	False	NA	NA	NA	121337235	121348448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_121337345_121341019_121341407_121348185
ENSMUSG00000027242.15_121337236_121356047_1	chr2	+	760	5	ISM	ENSMUSG00000027242.15	ENSMUST00000132373.2	3155	9	0	7799	0	-7223	5prime_fragment	FALSE	canonical	3	42	junction_4	6.13901457890434	198	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGAAAATGTAAG	NA	False	NA	NA	False	NA	NA	NA	121337235	121356047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932
ENSMUSG00000027242.15_121340329_121348448_1	chr2	+	738	3	ISM	ENSMUSG00000027242.15	ENSMUST00000110603.2	2341	13	0	25042	0	-14822	5prime_fragment	FALSE	canonical	3	27	junction_1	15	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGAAACTGAGAGTGAG	NA	False	NA	NA	False	NA	NA	NA	121340328	121348448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_121340417_121341019_121341407_121348185
ENSMUSG00000027242.15_121340329_121356047_1	chr2	+	739	5	ISM	ENSMUSG00000027242.15	ENSMUST00000110603.2	2341	13	0	17443	0	-7223	5prime_fragment	FALSE	canonical	3	27	junction_1	11.2998893799895	101	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGAAAATGTAAG	NA	False	NA	NA	False	NA	NA	NA	121340328	121356047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898_121349955_121355932
ENSMUSG00000027243.9_91541267_91551365_1	chr2	+	1783	3	FSM	ENSMUSG00000027243.9	ENSMUST00000090608.6	2308	3	0	525	0	-525	multi-exon	FALSE	canonical	3	50	junction_1	26	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTTGTTGTTTCAGTTG	3442	False	NA	NA	False	AAGAAA	-40	NA	91541266	91551365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_91541597_91542424_91543211_91550698
ENSMUSG00000027243.9_91541267_91551365_2	chr2	+	1507	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	0	-525	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	34.5	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTTGTTGTTTCAGTTG	3442	False	NA	NA	False	AAGAAA	-40	NA	91541266	91551365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_91541321_91542424_91543211_91550698
ENSMUSG00000027243.9_91541267_91551365_3	chr2	+	1597	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	0	-525	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	37.5	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTTGTTGTTTCAGTTG	3442	False	NA	NA	False	AAGAAA	-40	NA	91541266	91551365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_91541411_91542424_91543211_91550698
ENSMUSG00000027243.9_91541267_91551908_1	chr2	+	2050	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	0	18	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	34.5	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTCTGGACTGCTCTTG	3442	False	NA	NA	False	NA	NA	NA	91541266	91551908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_91541321_91542424_91543211_91550698
ENSMUSG00000027243.9_91541267_91551908_2	chr2	+	2140	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	0	18	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	37.5	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTCTGGACTGCTCTTG	3442	False	NA	NA	False	NA	NA	NA	91541266	91551908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_91541411_91542424_91543211_91550698
ENSMUSG00000027244.15_91505978_91540882_1	chr2	-	2497	16	FSM	ENSMUSG00000027244.15	ENSMUST00000076803.12	3551	16	39	1015	-18	650	multi-exon	FALSE	canonical	3	217	junction_4	20.2170445141937	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGATATTTTATAGAAGTA	NA	False	NA	-15	True	NA	NA	NA	91540882	91505977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
ENSMUSG00000027244.15_91506117_91540882_2	chr2	-	2358	16	FSM	ENSMUSG00000027244.15	ENSMUST00000076803.12	3551	16	39	1154	-18	511	multi-exon	FALSE	canonical	3	217	junction_4	20.2170445141937	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACCATTTCCCAAAGGCT	NA	False	NA	-6	True	NA	NA	NA	91540882	91506116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
ENSMUSG00000027245.12_121287605_121288792_1	chr2	+	439	4	FSM	ENSMUSG00000027245.12	ENSMUST00000126764.2	961	4	161	361	0	5	multi-exon	FALSE	canonical	3	4276	junction_2	190.202231556017	5378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCTTCAGTTTCA	NA	False	NA	25	True	AATAAA	-20	NA	121287604	121288792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_121287773_121288126_121288183_121288472_121288525_121288629
ENSMUSG00000027245.12_121287605_121288917_1	chr2	+	564	4	FSM	ENSMUSG00000027245.12	ENSMUST00000126764.2	961	4	161	236	0	0	multi-exon	FALSE	canonical	3	4276	junction_2	190.202231556017	19066	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGCTCTTATATTGTGT	NA	False	NA	12	True	TATAAA	-20	NA	121287604	121288917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_121287773_121288126_121288183_121288472_121288525_121288629
ENSMUSG00000027247.17_91480567_91501464_1	chr2	+	1632	14	FSM	ENSMUSG00000027247.17	ENSMUST00000111329.8	3201	14	362	1207	0	72	multi-exon	FALSE	canonical	3	195	junction_1	49.9501526672271	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTCTCACTGCCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	91480566	91501464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_91480598_91482108_91482169_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
ENSMUSG00000027247.17_91480567_91502671_1	chr2	+	2839	14	FSM	ENSMUSG00000027247.17	ENSMUST00000111329.8	3201	14	362	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	49.9501526672271	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480566	91502671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_91480598_91482108_91482169_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
ENSMUSG00000027248.14_121244364_121268461_1	chr2	+	1087	7	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	0	-707	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1521.15885100801	818	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGTCGTTTTTTTCCCCT	NA	False	NA	5	True	AATAAA	-14	NA	121244363	121268461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121268249
ENSMUSG00000027248.14_121244364_121268461_2	chr2	+	1942	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	0	-707	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1162.02890096016	4498	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGTCGTTTTTTTCCCCT	NA	False	NA	5	True	AATAAA	-14	NA	121244363	121268461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264478_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
ENSMUSG00000027248.14_121244364_121268461_3	chr2	+	1948	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	0	-707	at_least_one_novel_splicesite	FALSE	canonical	1	46	junction_12	1141.56200250164	4464	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGTCGTTTTTTTCCCCT	NA	False	NA	5	True	AATAAA	-14	NA	121244363	121268461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266889_121268066
ENSMUSG00000027248.14_121244364_121268461_4	chr2	+	1950	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	0	-707	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1162.02890096016	4816	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGTCGTTTTTTTCCCCT	NA	False	NA	5	True	AATAAA	-14	NA	121244363	121268461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264470_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
ENSMUSG00000027248.14_121244589_121268461_1	chr2	+	1730	13	FSM	ENSMUSG00000027248.14	ENSMUST00000028683.14	2770	13	333	707	0	-707	multi-exon	FALSE	canonical	3	3731	junction_4	277.160252481404	1458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGTCGTTTTTTTCCCCT	NA	False	NA	5	True	AATAAA	-14	NA	121244588	121268461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
ENSMUSG00000027255.15_91095638_91107276_1	chr2	+	2749	16	FSM	ENSMUSG00000027255.15	ENSMUST00000080008.13	3068	16	319	0	0	0	multi-exon	FALSE	canonical	3	197	junction_10	19.1619994317457	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCCTCTCCGTCCTGCCT	5821	False	NA	NA	False	AATAAA	-25	NA	91095637	91107276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097602_91097680_91097762_91098501_91098584_91098796_91098854_91099796_91099850_91100277_91100415_91100502_91100635_91103885_91104015_91104097_91104233_91105139_91105267_91105417_91105512_91105620_91105740_91106109
ENSMUSG00000027257.14_91087183_91095023_1	chr2	+	1777	10	NNC	ENSMUSG00000027257.14	novel	1862	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	28.1464424434461	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGCGTCTTTTGATAGC	4775	False	NA	19	True	AATAAA	-16	NA	91087182	91095023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_91087272_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093529_91093631_91093769_91094109_91094232_91094535
ENSMUSG00000027259.16_120970934_120987159_1	chr2	+	2579	11	NIC	ENSMUSG00000027259.16	novel	2477	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	76	junction_1	16.3572613844739	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCTTGAATTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	120970933	120987159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_120971148_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
ENSMUSG00000027274.17_136715700_136733087_1	chr2	-	2956	6	FSM	ENSMUSG00000027274.17	ENSMUST00000110089.9	3178	6	222	0	-13	0	multi-exon	FALSE	canonical	3	83	junction_3	119.159389055164	1846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTATACAATCCTTACTA	NA	False	NA	0	True	AATAAA	-20	NA	136733087	136715699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170_136723560_136727392_136727621_136732962
ENSMUSG00000027274.17_136722774_136733087_1	chr2	-	1139	3	FSM	ENSMUSG00000115423.3	ENSMUST00000227806.2	944	3	222	-417	222	417	multi-exon	FALSE	canonical	3	323	junction_1	8.5	1762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGTTATCTCAAGTCTGAA	NA	False	NA	-11	True	AATAAA	-20	NA	136733087	136722773	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_136723560_136727392_136727621_136732962
ENSMUSG00000027274.17_136722774_136733315_1	chr2	-	1131	3	ISM	ENSMUSG00000027274.17	ENSMUST00000028730.13	2935	6	-13	7074	-6	365	5prime_fragment	FALSE	canonical	3	17	junction_2	153	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGTTATCTCAAGTCTGAA	NA	False	NA	-11	True	AATAAA	-20	NA	136733315	136722773	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_136723560_136727392_136727621_136733198
ENSMUSG00000027282.18_90677522_90695736_1	chr2	+	1128	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111467.4	2281	12	-95	1248	0	1	multi-exon	FALSE	canonical	3	421	junction_3	644.761587047671	6681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTGGTGTCTGCCTTT	119	False	NA	52	True	NA	NA	NA	90677521	90695736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUSG00000027282.18_90677522_90695736_2	chr2	+	1155	13	FSM	ENSMUSG00000027282.18	ENSMUST00000136872.8	2596	13	23	1418	0	1	multi-exon	FALSE	canonical	3	2037	junction_4	251.273534000079	15766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTGGTGTCTGCCTTT	119	False	NA	52	True	NA	NA	NA	90677521	90695736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUSG00000027282.18_90677522_90695736_3	chr2	+	1142	12	NNC	ENSMUSG00000027282.18	novel	2281	12	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	762.571281047015	6989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTGGTGTCTGCCTTT	119	False	NA	52	True	NA	NA	NA	90677521	90695736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_90677730_90679714_90679800_90679941_90680063_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUSG00000027282.18_90677631_90695736_1	chr2	+	1024	13	NIC	ENSMUSG00000027282.18	novel	1047	13	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	118	junction_1	704.955687141634	5515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTGGTGTCTGCCTTT	228	False	NA	52	True	NA	NA	NA	90677630	90695736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_90677708_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUSG00000027282.18_90677631_90695736_2	chr2	+	1046	13	FSM	ENSMUSG00000027282.18	ENSMUST00000136872.8	2596	13	132	1418	0	1	multi-exon	FALSE	canonical	3	2037	junction_4	251.273534000079	11129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTGGTGTCTGCCTTT	228	False	NA	52	True	NA	NA	NA	90677630	90695736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUSG00000027282.18_90677631_90695736_3	chr2	+	1033	12	NNC	ENSMUSG00000027282.18	novel	2281	12	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	762.571281047015	785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTGGTGTCTGCCTTT	228	False	NA	52	True	NA	NA	NA	90677630	90695736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_90677730_90679714_90679800_90679941_90680063_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUSG00000027282.18_90677631_90695736_4	chr2	+	1019	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111467.4	2281	12	14	1248	0	1	multi-exon	FALSE	canonical	3	421	junction_3	644.761587047671	2100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTGGTGTCTGCCTTT	228	False	NA	52	True	NA	NA	NA	90677630	90695736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUSG00000027282.18_90677631_90695736_5	chr2	+	1039	12	NNC	ENSMUSG00000027282.18	novel	2281	12	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	762.571281047015	3190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTGGTGTCTGCCTTT	228	False	NA	52	True	NA	NA	NA	90677630	90695736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_90677730_90679714_90679800_90679941_90680069_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUSG00000027285.14_120439864_120449601_1	chr2	+	644	5	FSM	ENSMUSG00000027285.14	ENSMUST00000028741.14	1430	5	0	786	0	-786	multi-exon	FALSE	canonical	3	33	junction_2	111.162887242101	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGTGCCTCCTTTACCTT	NA	False	NA	-90	True	NA	NA	NA	120439863	120449601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_120440027_120442818_120442912_120446335_120446469_120448353_120448463_120449455
ENSMUSG00000027285.14_120439864_120449601_2	chr2	+	714	6	FSM	ENSMUSG00000027285.14	ENSMUST00000124187.8	3154	6	0	2440	0	-786	multi-exon	FALSE	canonical	3	158	junction_2	54.4147038951789	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGTGCCTCCTTTACCTT	NA	False	NA	-90	True	NA	NA	NA	120439863	120449601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455
ENSMUSG00000027285.14_120439864_120449702_1	chr2	+	815	6	FSM	ENSMUSG00000027285.14	ENSMUST00000124187.8	3154	6	0	2339	0	-685	multi-exon	FALSE	canonical	3	158	junction_2	54.4147038951789	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGTTTCTAGATTGTTGT	NA	False	NA	11	True	NA	NA	NA	120439863	120449702	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455
ENSMUSG00000027285.14_120439864_120449702_2	chr2	+	652	4	NIC	ENSMUSG00000027285.14	novel	1430	5	NA	NA	0	-685	combination_of_known_splicesites	FALSE	canonical	3	9	junction_1	136.826735529119	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGTTTCTAGATTGTTGT	NA	False	NA	11	True	NA	NA	NA	120439863	120449702	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_120440027_120446335_120446469_120448353_120448463_120449455
ENSMUSG00000027285.14_120439864_120449702_3	chr2	+	745	5	FSM	ENSMUSG00000027285.14	ENSMUST00000028741.14	1430	5	0	685	0	-685	multi-exon	FALSE	canonical	3	33	junction_2	111.162887242101	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGTTTCTAGATTGTTGT	NA	False	NA	11	True	NA	NA	NA	120439863	120449702	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_120440027_120442818_120442912_120446335_120446469_120448353_120448463_120449455
ENSMUSG00000027286.17_120434719_120439783_1	chr2	-	1750	6	NIC	ENSMUSG00000027286.17	novel	1848	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	69.0582362937253	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	120439783	120434718	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439754
ENSMUSG00000027286.17_120439864_120450387_1	chr2	-	1406	6	NNC	ENSMUSG00000027286.17	novel	1961	6	NA	NA	-10386	-565	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCACAGGGCGTTCCTG	NA	False	NA	NA	False	NA	NA	NA	120450387	120439863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_120440027_120442818_120442912_120446335_120446469_120448353_120448463_120449455_120449930_120449953
ENSMUSG00000027286.17_120439864_120450387_2	chr2	-	1476	7	NNC	ENSMUSG00000027286.17	novel	1961	6	NA	NA	-10386	-565	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCACAGGGCGTTCCTG	NA	False	NA	NA	False	NA	NA	NA	120450387	120439863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455_120449930_120449953
ENSMUSG00000027286.17_120439864_120451822_2	chr2	-	2911	7	NNC	ENSMUSG00000027286.17	novel	1961	6	NA	NA	-11821	-565	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCACAGGGCGTTCCTG	NA	False	NA	NA	False	NA	NA	NA	120451822	120439863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455_120449930_120449953
ENSMUSG00000027287.15_120398204_120419695_1	chr2	+	576	6	NNC	ENSMUSG00000027287.15	novel	481	6	NA	NA	0	2947	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_5	149.756602525565	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGGTTTTGATTTGTCA	NA	False	NA	NA	False	AATAAA	-25	NA	120398203	120419695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120419509
ENSMUSG00000027287.15_120398204_120430228_1	chr2	+	1163	8	FSM	ENSMUSG00000027287.15	ENSMUST00000110711.9	2723	8	52	1508	0	-1508	multi-exon	FALSE	canonical	3	373	junction_4	7.72221814385119	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGACGAGTGCTTGGGGT	NA	False	NA	NA	False	ATTAAA	-21	NA	120398203	120430228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
ENSMUSG00000027287.15_120398204_120430974_1	chr2	+	1909	8	FSM	ENSMUSG00000027287.15	ENSMUST00000110711.9	2723	8	52	762	0	-762	multi-exon	FALSE	canonical	3	373	junction_4	7.72221814385119	1408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTAATGTTTCTATGACT	NA	False	NA	19	True	ATTAAA	-31	NA	120398203	120430974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
ENSMUSG00000027305.10_119485927_119493302_1	chr2	-	1293	4	NIC	ENSMUSG00000027305.10	novel	1478	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	127.452823516085	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493302	119485926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_119486274_119486848_119486924_119490482_119491141_119493089
ENSMUSG00000027305.10_119485927_119493302_2	chr2	-	1495	5	NIC	ENSMUSG00000027305.10	novel	1308	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_4	131.115407180087	1985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493302	119485926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493073
ENSMUSG00000027305.10_119485927_119493302_4	chr2	-	1122	4	NIC	ENSMUSG00000027305.10	novel	1308	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	130.10337769977	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493302	119485926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_119486274_119486848_119486924_119490482_119491141_119493260
ENSMUSG00000027306.16_119439993_119448950_1	chr2	+	1418	5	NIC	ENSMUSG00000027306.16	novel	2960	11	NA	NA	-8786	-12036	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGCGCGCGCCTCTTTCTC	NA	False	NA	NA	False	NA	NA	NA	119439992	119448950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_119440846_119442232_119442337_119443492_119443575_119448334_119448402_119448638
ENSMUSG00000027309.19_130645306_130682041_1	chr2	-	1302	8	Fusion	ENSMUSG00000027309.19_ENSMUSG00000089662.2	novel	1984	7	NA	NA	-10	115	multi-exon	TRUE	canonical	3	31	junction_1	16.7063473211928	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTGGTGTGTATGTGT	NA	False	NA	1	True	AATAAA	-32	NA	130682041	130645305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_-_130645843_130648790_130648869_130652741_130652849_130654764_130654862_130656098_130656224_130662388_130662509_130664340_130664421_130681883
ENSMUSG00000027313.4_119181710_119184862_1	chr2	+	1632	2	NNC	ENSMUSG00000027313.4	novel	1637	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAAGTAGGGAAAGCCTC	7152	False	NA	81	True	GATAAA	-13	NA	119181709	119184862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_119182149_119183669
ENSMUSG00000027315.14_119067843_119079995_1	chr2	+	2265	10	NNC	ENSMUSG00000027315.14	novel	2273	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	103.024029319785	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTTTGTTGAGCTC	NA	False	NA	13	True	AATAAA	-1	NA	119067842	119079995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_119067954_119068181_119068725_119075635_119075764_119075990_119076130_119076217_119076389_119076820_119076966_119077077_119077129_119078491_119078663_119078836_119078885_119079237
ENSMUSG00000027317.9_119048600_119067505_1	chr2	-	967	5	NNC	ENSMUSG00000027317.9	novel	787	4	NA	NA	-7118	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	17.007351351695	598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGGAGTGTGGTGTGTAT	NA	False	NA	NA	False	GATAAA	-18	NA	119067505	119048599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_119048905_119049106_119049140_119049244_119049329_119060022_119060323_119067260
ENSMUSG00000027323.11_118943298_118954594_1	chr2	+	893	5	ISM	ENSMUSG00000027323.11	ENSMUST00000110828.2	2849	7	3	9486	0	267	5prime_fragment	FALSE	canonical	3	719	junction_4	88.7901317714981	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTACTTTATGTGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	118943297	118954594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264
ENSMUSG00000027323.11_118943298_118966205_1	chr2	+	1792	10	FSM	ENSMUSG00000027323.11	ENSMUST00000028795.10	3368	10	10	1566	0	516	multi-exon	FALSE	canonical	3	651	junction_5	89.2808026867762	3583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGATGTGTTATTTGCTGG	NA	False	NA	18	True	AATAAA	-14	NA	118943297	118966205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529
ENSMUSG00000027323.11_118943298_118966554_1	chr2	+	2141	10	FSM	ENSMUSG00000027323.11	ENSMUST00000028795.10	3368	10	10	1217	0	865	multi-exon	FALSE	canonical	3	651	junction_5	89.2808026867762	4543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGGAAGAAAGCTCAAAAG	NA	False	NA	10	True	ATTAAA	-17	NA	118943297	118966554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529
ENSMUSG00000027323.11_118943451_118966205_1	chr2	+	1639	10	FSM	ENSMUSG00000027323.11	ENSMUST00000028795.10	3368	10	163	1566	153	516	multi-exon	FALSE	canonical	3	651	junction_5	89.2808026867762	3217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGATGTGTTATTTGCTGG	NA	False	NA	18	True	AATAAA	-14	NA	118943450	118966205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529
ENSMUSG00000027326.14_118877631_118898740_1	chr2	+	867	8	FSM	ENSMUSG00000027326.14	ENSMUST00000028799.12	5527	8	0	4660	0	-1012	multi-exon	FALSE	canonical	3	41	junction_1	11.0822527732683	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAATTCTACAAAAATAG	7242	False	NA	NA	False	NA	NA	NA	118877630	118898740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_118878042_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603
ENSMUSG00000027326.14_118877631_118898740_2	chr2	+	530	8	FSM	ENSMUSG00000027326.14	ENSMUST00000152380.8	1573	8	31	1012	0	-1012	multi-exon	FALSE	canonical	3	17	junction_1	17.907927784951	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAATTCTACAAAAATAG	7242	False	NA	NA	False	NA	NA	NA	118877630	118898740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_118877705_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603
ENSMUSG00000027327.17_130988244_131001965_1	chr2	-	1276	6	FSM	ENSMUSG00000027327.17	ENSMUST00000028800.12	832	6	36	-480	-3	0	multi-exon	FALSE	canonical	3	7	junction_4	282.042124513343	4169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTCAGAGGTTAGCGGGG	NA	False	NA	-14	True	AATAAA	-15	NA	131001965	130988243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130993537_130993681_130995504_130995631_131001872
ENSMUSG00000027327.17_130988244_131001965_2	chr2	-	1236	6	NNC	ENSMUSG00000027327.17	novel	1358	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	284.924130252248	3987	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTCAGAGGTTAGCGGGG	NA	False	NA	-14	True	AATAAA	-15	NA	131001965	130988243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_130988896_130989111_130989204_130990075_130990215_130993537_130993681_130995513_130995631_131001872
ENSMUSG00000027327.17_130988724_131001965_1	chr2	-	787	6	FSM	ENSMUSG00000027327.17	ENSMUST00000103188.10	1241	6	-25	479	-3	0	multi-exon	FALSE	canonical	3	656	junction_1	33.1336686770421	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCTGTGTGACGGTGTG	NA	False	NA	NA	False	NA	NA	NA	131001965	130988723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130993537_130993681_130995513_130995631_131001872
ENSMUSG00000027331.16_118644713_118665021_2	chr2	+	1217	9	FSM	ENSMUSG00000027331.16	ENSMUST00000134661.8	4602	9	229	3156	0	-102	multi-exon	FALSE	canonical	3	391	junction_3	12.8038080273019	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGAAGTTTTTTTGGCT	NA	False	NA	-35	True	NA	NA	NA	118644712	118665021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
ENSMUSG00000027331.16_118644713_118665128_1	chr2	+	1324	9	FSM	ENSMUSG00000027331.16	ENSMUST00000134661.8	4602	9	229	3049	0	5	multi-exon	FALSE	canonical	3	391	junction_3	12.8038080273019	1224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCTGACTAACACTAGGG	NA	False	NA	26	True	AATAAA	-19	NA	118644712	118665128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
ENSMUSG00000027331.16_118644713_118665128_2	chr2	+	1318	9	NNC	ENSMUSG00000027331.16	novel	4602	9	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	137.118333930952	471	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCTGACTAACACTAGGG	NA	False	NA	26	True	AATAAA	-19	NA	118644712	118665128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659445_118659496_118662033_118662109_118664480
ENSMUSG00000027332.12_118692509_118707760_1	chr2	+	1081	10	NNC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	0	313	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	89.5624480391499	480	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCCTGAGATCATAGAAC	NA	False	NA	NA	False	NA	NA	NA	118692508	118707760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706878_118707368_118707451_118707622
ENSMUSG00000027332.12_118692509_118707760_2	chr2	+	1094	10	NNC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	0	313	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	69.6920917631333	488	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCCTGAGATCATAGAAC	NA	False	NA	NA	False	NA	NA	NA	118692508	118707760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118707622
ENSMUSG00000027332.12_118692509_118711833_1	chr2	+	1929	11	NIC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	0	337	combination_of_known_splicesites	FALSE	canonical	3	32	junction_9	56.9639359595174	498	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCTGCGCCCAAAGCCG	NA	False	NA	45	True	ATTAAA	-17	NA	118692508	118711833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708355_118708429_118710933
ENSMUSG00000027332.12_118692618_118707760_1	chr2	+	985	10	NNC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	109	313	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	69.6920917631333	306	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCCTGAGATCATAGAAC	NA	False	NA	NA	False	NA	NA	NA	118692617	118707760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118707622
ENSMUSG00000027333.19_131333913_131367089_1	chr2	+	2027	7	FSM	ENSMUSG00000027333.19	ENSMUST00000028806.12	2270	7	229	14	0	2	multi-exon	FALSE	canonical	3	113	junction_6	10.8269211792745	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTCCTTTGCTTCTCTCCT	NA	False	NA	17	True	AATAAA	-18	NA	131333912	131367089	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131363978_131364140_131366662
ENSMUSG00000027338.17_131794348_131796919_1	chr2	+	524	3	Genic_Genomic	ENSMUSG00000027338.17	novel	1969	3	NA	NA	1391	-1131	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACACCTCTGGCAGGTG	NA	False	NA	NA	False	NA	NA	NA	131794347	131796919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_+_131794593_131796102_131796196_131796733
ENSMUSG00000027341.11_132081412_132089676_1	chr2	-	1556	4	NNC	ENSMUSG00000027341.11	novel	1612	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_3	261.285709946453	2686	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	4921	False	NA	-2	True	TATAAA	-20	NA	132089676	132081411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_132082547_132085938_132086062_132087875_132087990_132089492
ENSMUSG00000027341.11_132081922_132089676_1	chr2	-	1051	4	FSM	ENSMUSG00000027341.11	ENSMUST00000028816.9	1612	4	51	510	0	-508	multi-exon	FALSE	canonical	3	556	junction_2	26.7332502076846	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCCTCCACCTTCATA	4921	False	NA	NA	False	ATTAAA	-19	NA	132089676	132081921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089492
ENSMUSG00000027341.11_132081922_132089676_2	chr2	-	1028	4	FSM	ENSMUSG00000027341.11	ENSMUST00000110163.8	1551	4	13	510	0	-508	multi-exon	FALSE	canonical	3	93	junction_3	223.123782287371	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCCTCCACCTTCATA	4921	False	NA	NA	False	ATTAAA	-19	NA	132089676	132081921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089515
ENSMUSG00000027341.11_132087091_132089676_1	chr2	-	505	3	FSM	ENSMUSG00000027341.11	ENSMUST00000143782.2	359	3	3	-149	0	149	multi-exon	FALSE	canonical	3	26	junction_1	297	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTGTAATGAAATGAATAT	4921	False	NA	NA	False	AATAAA	-14	NA	132089676	132087090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_132087293_132087875_132087995_132089492
ENSMUSG00000027342.15_132091206_132095100_1	chr2	-	1250	6	NNC	ENSMUSG00000027342.15	novel	1518	6	NA	NA	134	-124	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	963.831603549085	7411	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGCAGTGCCGCCTTTGT	8359	False	NA	-3	True	AATAAA	-21	NA	132095100	132091205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_132091616_132091693_132091808_132093163_132093359_132093610_132093679_132093822_132093921_132094735
ENSMUSG00000027342.15_132091206_132095100_2	chr2	-	1254	6	NNC	ENSMUSG00000027342.15	novel	1518	6	NA	NA	134	-124	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	936.600533845673	13790	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGCAGTGCCGCCTTTGT	8359	False	NA	-3	True	AATAAA	-21	NA	132095100	132091205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093673_132093822_132093921_132094735
ENSMUSG00000027342.15_132091206_132095100_3	chr2	-	1250	6	NNC	ENSMUSG00000027342.15	novel	1518	6	NA	NA	134	-124	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	966.439444559254	9484	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGCAGTGCCGCCTTTGT	8359	False	NA	-3	True	AATAAA	-21	NA	132095100	132091205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_132091616_132091703_132091818_132093163_132093359_132093610_132093679_132093822_132093921_132094735
ENSMUSG00000027342.15_132091206_132095234_1	chr2	-	1394	6	FSM	ENSMUSG00000027342.15	ENSMUST00000028817.7	1518	6	0	124	0	-124	multi-exon	FALSE	canonical	3	1968	junction_1	234.222629137323	16804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGCAGTGCCGCCTTTGT	8225	False	NA	-3	True	AATAAA	-21	NA	132095234	132091205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093679_132093822_132093921_132094735
ENSMUSG00000027342.15_132091396_132095100_1	chr2	-	1064	6	NNC	ENSMUSG00000027342.15	novel	1518	6	NA	NA	134	-314	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	936.600533845673	854	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACCTACTTTCTTTTCTCT	8359	False	NA	NA	False	AATAAA	-23	NA	132095100	132091395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093673_132093822_132093921_132094735
ENSMUSG00000027342.15_132091396_132095100_2	chr2	-	1070	6	FSM	ENSMUSG00000027342.15	ENSMUST00000028817.7	1518	6	134	314	134	-314	multi-exon	FALSE	canonical	3	1968	junction_1	234.222629137323	2037	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACCTACTTTCTTTTCTCT	8359	False	NA	NA	False	AATAAA	-23	NA	132095100	132091395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093679_132093822_132093921_132094735
ENSMUSG00000027346.16_132406404_132420137_1	chr2	-	548	4	ISM	ENSMUSG00000027346.16	ENSMUST00000140867.8	459	6	0	10415	0	143	5prime_fragment	FALSE	canonical	3	30	junction_3	36.8057966449127	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGGAAGGAAGAAAGA	NA	False	NA	NA	False	AATAGA	-32	NA	132420137	132406403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_132406632_132410539_132410637_132414104_132414178_132419987
ENSMUSG00000027347.19_117128574_117169028_1	chr2	-	1096	5	ISM	ENSMUSG00000027347.19	ENSMUST00000110898.2	1260	6	4378	0	4162	0	3prime_fragment	FALSE	canonical	0	0	junction_3	18.2944663764757	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	117169028	117128573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_117129097_117130923_117131056_117132441_117132505_117136258_117136365_117168756
ENSMUSG00000027349.6_117080220_117090722_1	chr2	+	448	4	ISM	ENSMUSG00000027349.6	ENSMUST00000028825.5	1861	8	0	11299	0	0	5prime_fragment	FALSE	canonical	2	2	junction_2	0.471404520791032	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATAAAAATAGTGAAATTT	NA	False	NA	NA	False	CATAAA	-12	NA	117080219	117090722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_117080320_117088114_117088261_117089701_117089837_117090655
ENSMUSG00000027353.15_132681516_132685617_1	chr2	+	558	4	ISM	ENSMUSG00000027353.15	ENSMUST00000028831.15	3179	19	23455	198	23372	-198	3prime_fragment	FALSE	canonical	3	174	junction_3	19.6015872373189	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAGAAGAGTAAGAAGAGT	NA	False	NA	26	True	AATAAA	-18	NA	132681515	132685617	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_132681584_132682663_132682741_132684522_132684713_132685394
ENSMUSG00000027359.17_126394944_126430163_1	chr2	+	2301	10	FSM	ENSMUSG00000027359.17	ENSMUST00000061491.14	2918	10	617	0	-566	0	multi-exon	FALSE	canonical	3	61	junction_5	10.1592261783666	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACGAGGCTTCGCTGTCT	NA	False	NA	16	True	AATAAA	-16	NA	126394943	126430163	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_126395553_126403456_126403667_126406597_126406757_126409666_126409792_126416621_126416817_126419779_126419871_126420768_126420968_126422825_126422924_126428171_126428303_126429679
ENSMUSG00000027365.15_126672096_126718150_1	chr2	-	1977	15	ISM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	0	38611	0	665	5prime_fragment	FALSE	canonical	3	201	junction_9	21.566697683688	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGACACAATCATTTCATT	NA	False	NA	NA	False	GATAAA	-11	NA	126718150	126672095	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
ENSMUSG00000027367.17_127132699_127140853_1	chr2	+	2199	5	ISM	ENSMUSG00000027367.17	ENSMUST00000125049.2	2869	7	20075	-1	704	1	3prime_fragment	FALSE	canonical	3	326	junction_2	27.9732014613987	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAGAGTGTTCATTTCTG	NA	False	NA	10	True	AATAAA	-17	NA	127132698	127140853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_127132803_127132877_127132961_127134070_127134171_127137403_127137489_127139026
ENSMUSG00000027371.11_127278136_127286477_1	chr2	-	1057	7	NIC	ENSMUSG00000027371.11	novel	1462	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_3	35.4044096437467	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTAGCTTCCACTGTCTT	NA	False	NA	-5	True	AATAAA	-18	NA	127286477	127278135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_127278327_127278465_127278554_127278656_127278766_127280429_127280490_127282305_127282523_127283793_127284045_127286336
ENSMUSG00000027374.13_127429142_127445904_1	chr2	+	1629	11	NNC	ENSMUSG00000027374.13	novel	4481	12	NA	NA	0	129	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	437.32990979351	2945	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	3967	False	NA	25	True	AATAAA	-22	NA	127429141	127445904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127440077_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
ENSMUSG00000027374.13_127429339_127445904_1	chr2	+	1439	12	FSM	ENSMUSG00000027374.13	ENSMUST00000028852.13	4481	12	197	2845	0	129	multi-exon	FALSE	canonical	3	1110	junction_4	149.07045314213	3849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	4164	False	NA	25	True	AATAAA	-22	NA	127429338	127445904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
ENSMUSG00000027374.13_127429339_127445904_2	chr2	+	1432	11	NNC	ENSMUSG00000027374.13	novel	3228	11	NA	NA	0	129	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	437.32990979351	2298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	4164	False	NA	25	True	AATAAA	-22	NA	127429338	127445904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127440077_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
ENSMUSG00000027374.13_127432361_127445904_1	chr2	+	1413	12	NIC	ENSMUSG00000027374.13	novel	424	5	NA	NA	0	129	combination_of_known_junctions	FALSE	canonical	3	81	junction_1	397.120336904912	2597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	7186	False	NA	25	True	AATAAA	-22	NA	127432360	127445904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_127432402_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
ENSMUSG00000027375.15_127475146_127498139_1	chr2	-	2302	4	FSM	ENSMUSG00000027375.15	ENSMUST00000028854.15	2778	4	476	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	8.83176086632785	712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGTCTCACTCTTTTGT	NA	False	NA	-2	True	ATTAAA	-17	NA	127498139	127475145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_127476975_127480508_127480635_127482140_127482309_127497960
ENSMUSG00000027375.15_127476794_127498139_1	chr2	-	654	4	FSM	ENSMUSG00000027375.15	ENSMUST00000028854.15	2778	4	476	1648	0	0	multi-exon	FALSE	canonical	3	105	junction_3	8.83176086632785	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAACAAAACAAAC	NA	False	NA	-52	True	NA	NA	NA	127498139	127476793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_127476975_127480508_127480635_127482140_127482309_127497960
ENSMUSG00000027377.3_127547125_127571852_1	chr2	-	1187	4	FSM	ENSMUSG00000027377.3	ENSMUST00000028856.3	2006	4	0	819	0	-819	multi-exon	FALSE	canonical	3	53	junction_2	4.54606056566195	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTGGGTTTGGGGAGTC	NA	False	NA	NA	False	AATAAA	-17	NA	127571852	127547124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_127547844_127550756_127550880_127554188_127554357_127571675
ENSMUSG00000027378.17_127582656_127612274_1	chr2	-	1585	14	ISM	ENSMUSG00000027378.17	ENSMUST00000028857.14	2260	20	18500	4	-16284	0	3prime_fragment	FALSE	canonical	3	19	junction_11	17.8474800568231	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTGTTATATCTAAATT	NA	False	NA	0	True	AATAAA	-16	NA	127612274	127582655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_127583109_127584991_127585037_127587815_127587890_127589919_127590033_127595892_127595993_127598011_127598089_127599598_127599682_127601495_127601607_127603081_127603157_127605698_127605828_127607943_127608042_127610090_127610179_127611534_127611578_127612178
ENSMUSG00000027379.14_127663522_127673785_1	chr2	-	998	8	ISM	ENSMUSG00000027379.15	ENSMUST00000028858.9	3418	25	0	20477	0	1846	5prime_fragment	FALSE	canonical	0	0	junction_1	238.0197213575	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGATGCCTTGAGCTCA	NA	False	NA	NA	False	AATGAA	-2	NA	127673785	127663521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_127663780_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
ENSMUSG00000027379.14_127668402_127673785_1	chr2	-	1361	4	ISM	ENSMUSG00000027379.15	ENSMUST00000133943.2	1137	6	-61	3034	0	-3034	5prime_fragment	FALSE	canonical	3	663	junction_3	25.9015229067499	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGTATTTAATAAAATGTT	NA	False	NA	NA	False	AGTAAA	-17	NA	127673785	127668401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_127669418_127671357_127671497_127671597_127671658_127673639
ENSMUSG00000027381.17_127967958_128000477_1	chr2	+	1047	4	FSM	ENSMUSG00000027381.17	ENSMUST00000110341.9	5036	4	-1	3990	0	115	multi-exon	FALSE	canonical	3	10	junction_1	11.2644968324772	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGGAGGGCTTTTCTCTT	NA	False	NA	NA	False	AGTAAA	-20	NA	127967957	128000477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_127968173_127970539_127970935_127989004_127989115_128000150
ENSMUSG00000027384.7_140012633_140045556_1	chr2	+	1027	11	NNC	ENSMUSG00000027384.7	novel	1166	11	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_6	69.9549140518377	1956	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGTTTCCCAGAATTTT	NA	False	NA	15	True	AATAAA	-15	NA	140012632	140045556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_140012854_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030656_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
ENSMUSG00000027384.7_140012950_140045556_1	chr2	+	1053	11	NNC	ENSMUSG00000027384.7	novel	1200	11	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	76.7072356430604	310	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGTTTCCCAGAATTTT	NA	False	NA	15	True	AATAAA	-15	NA	140012949	140045556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_140013175_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
ENSMUSG00000027384.7_140012950_140045556_2	chr2	+	939	11	NNC	ENSMUSG00000027384.7	novel	1200	11	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	77.5835678478375	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGTTTCCCAGAATTTT	NA	False	NA	15	True	AATAAA	-15	NA	140012949	140045556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_140013061_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
ENSMUSG00000027387.12_128768188_128785997_1	chr2	-	1612	9	NNC	ENSMUSG00000027387.12	novel	1624	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	42	junction_6	71.0922595997623	1295	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTTCATACTTGATT	NA	False	NA	1	True	AATAAA	-22	NA	128785997	128768187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_128768732_128770806_128770849_128771766_128771877_128772711_128772824_128773197_128773321_128775118_128775253_128777243_128777467_128781762_128781857_128785767
ENSMUSG00000027394.14_128907905_128935666_1	chr2	+	1987	7	FSM	ENSMUSG00000027394.14	ENSMUST00000035812.14	4567	7	43	2537	0	-2537	multi-exon	FALSE	canonical	3	70	junction_4	11.1118055338555	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGATAATCTTACTTTAC	NA	False	NA	NA	False	AAAACA	-10	NA	128907904	128935666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_128908224_128910774_128910854_128917775_128918009_128923129_128923266_128923893_128924164_128930913_128931058_128934860
ENSMUSG00000027405.17_130116366_130120883_1	chr2	+	1511	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	16	350	0	0	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCTCTCTACCTAAATCC	NA	False	NA	NA	False	AAAAAG	-38	NA	130116365	130120883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
ENSMUSG00000027405.17_130116366_130121227_1	chr2	+	1850	12	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	706.512316164808	4346	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATGTGTGTATTTTGT	NA	False	NA	25	True	AATAAA	-14	NA	130116365	130121227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120206_130120816
ENSMUSG00000027405.17_130116366_130121227_2	chr2	+	2339	12	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	433	junction_11	590.287953263994	3992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATGTGTGTATTTTGT	NA	False	NA	25	True	AATAAA	-14	NA	130116365	130121227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332
ENSMUSG00000027405.17_130116366_130121227_3	chr2	+	1974	13	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	83	junction_12	803.725630354594	4341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATGTGTGTATTTTGT	NA	False	NA	25	True	AATAAA	-14	NA	130116365	130121227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120452_130120816
ENSMUSG00000027405.17_130121229_130126354_1	chr2	+	1500	12	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	1598	5121	intron_retention	FALSE	non_canonical	0	0	junction_1	0	5125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGGGGAAGTGACGCCGGA	NA	False	NA	NA	False	NA	NA	NA	130121228	130126354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123684_130123763_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
ENSMUSG00000027405.17_130121229_130126354_2	chr2	+	1496	12	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	1598	5121	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4740	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGGGGAAGTGACGCCGGA	NA	False	NA	NA	False	NA	NA	NA	130121228	130126354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_130121647_130122182_130122237_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
ENSMUSG00000027406.14_130121229_130126354_1	chr2	-	1503	12	FSM	ENSMUSG00000027406.14	ENSMUST00000028892.11	1616	12	113	0	0	0	multi-exon	FALSE	canonical	3	745	junction_6	49.1089192551946	5235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTTTGTGTTTTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	130126354	130121228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
ENSMUSG00000027411.18_130266285_130285654_1	chr2	+	2626	24	FSM	ENSMUSG00000027411.18	ENSMUST00000028900.11	3161	24	0	535	0	0	multi-exon	FALSE	canonical	0	0	junction_15	83.6383654878219	232	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTGTTGTATGCTGTCTG	NA	False	NA	21	True	AATAAA	-21	NA	130266284	130285654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282283_130282371_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
ENSMUSG00000027423.16_144092043_144112713_1	chr2	-	2399	14	FSM	ENSMUSG00000027423.16	ENSMUST00000110030.10	2512	14	113	0	-9	0	multi-exon	FALSE	canonical	3	1124	junction_13	126.932773522376	2202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTTCTGACTGTTTT	NA	False	NA	NA	False	AAGAAA	-16	NA	144112713	144092042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296_144112380_144112620
ENSMUSG00000027423.16_144092453_144112492_1	chr2	-	2009	13	FSM	ENSMUSG00000027423.16	ENSMUST00000028909.5	2419	13	0	410	0	-410	multi-exon	FALSE	canonical	3	1195	junction_10	117.133352305064	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATATGGAGTGCTTTTGTA	NA	False	NA	-21	True	AATAAA	-15	NA	144112492	144092452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296
ENSMUSG00000027423.16_144092453_144112713_1	chr2	-	1989	14	FSM	ENSMUSG00000027423.16	ENSMUST00000110030.10	2512	14	113	410	-9	-410	multi-exon	FALSE	canonical	3	1124	junction_13	126.932773522376	1139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATATGGAGTGCTTTTGTA	NA	False	NA	-21	True	AATAAA	-15	NA	144112713	144092452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296_144112380_144112620
ENSMUSG00000027423.16_144092984_144112713_1	chr2	-	1458	14	FSM	ENSMUSG00000027423.16	ENSMUST00000110030.10	2512	14	113	941	-9	0	multi-exon	FALSE	canonical	3	1124	junction_13	126.932773522376	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCTTAACACTTAACCA	NA	False	NA	-17	True	AATAAA	-15	NA	144112713	144092983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296_144112380_144112620
ENSMUSG00000027424.12_144092984_144112713_1	chr2	+	1453	14	NNC	ENSMUSG00000027424.12	novel	2308	5	NA	NA	-19599	-9723	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	77	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGCGCACCGCGGCCCGGG	NA	False	NA	NA	False	NA	NA	NA	144092983	144112713	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103940_144112296_144112380_144112620
ENSMUSG00000027424.12_144112861_144122436_1	chr2	+	2082	5	NNC	ENSMUSG00000027424.12	novel	2359	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	209.606178344056	783	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTCTTTCAGTGGACC	NA	False	NA	14	True	AATAAA	-16	NA	144112860	144122436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_144112993_144113834_144114405_144118234_144118446_144120913_144121047_144121400
ENSMUSG00000027424.12_144112861_144122436_2	chr2	+	2088	5	FSM	ENSMUSG00000027424.12	ENSMUST00000028910.9	2840	5	41	711	0	0	multi-exon	FALSE	canonical	3	360	junction_1	65.1517459474418	965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTCTTTCAGTGGACC	NA	False	NA	14	True	AATAAA	-16	NA	144112860	144122436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_144112993_144113834_144114405_144118234_144118452_144120913_144121047_144121400
ENSMUSG00000027425.19_144210919_144215871_1	chr2	+	920	2	FSM	ENSMUSG00000098387.3	ENSMUST00000183618.3	693	2	3	-230	3	230	multi-exon	FALSE	canonical	3	459	junction_1	0	418	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCATCATTATTATTATTA	NA	False	NA	17	True	AATAAA	-18	NA	144210918	144215871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_144211078_144215110
ENSMUSG00000027427.14_144369668_144380814_1	chr2	+	1272	9	FSM	ENSMUSG00000027427.14	ENSMUST00000028914.9	4403	9	30	3101	0	0	multi-exon	FALSE	canonical	3	42	junction_5	6.30352084156148	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATACCTTGAAGGTCTGG	627	False	NA	NA	False	AATAAA	-32	NA	144369667	144380814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_144369846_144370622_144370741_144374273_144374342_144375077_144375146_144376218_144376332_144377860_144378005_144378202_144378311_144379085_144379278_144380531
ENSMUSG00000027428.10_144385157_144392730_1	chr2	-	1139	5	FSM	ENSMUSG00000027428.10	ENSMUST00000028915.6	2170	5	59	972	-20	584	multi-exon	FALSE	canonical	3	248	junction_1	20.0873094266007	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTTTTCATTCAACTTAT	NA	False	NA	NA	False	AGTAAA	-43	NA	144392730	144385156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_144385930_144386293_144386380_144389913_144390020_144391023_144391067_144392599
ENSMUSG00000027429.17_144398176_144432669_2	chr2	+	2761	20	NIC	ENSMUSG00000027429.17	novel	2779	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	371	junction_1	64.9806278398403	1046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGATTTTGTCTCATTTT	NA	False	NA	NA	False	AATAAA	-37	NA	144398175	144432669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_144398245_144401126_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
ENSMUSG00000027429.17_144428914_144432669_1	chr2	+	558	3	ISM	ENSMUSG00000027429.17	ENSMUST00000128210.2	2417	17	22095	0	9871	0	3prime_fragment	FALSE	canonical	3	606	junction_1	33.5	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGATTTTGTCTCATTTT	NA	False	NA	NA	False	AATAAA	-37	NA	144428913	144432669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_144428942_144429421_144429488_144432205
ENSMUSG00000027430.13_144441817_144610678_1	chr2	+	1344	6	NNC	ENSMUSG00000027430.13	novel	1350	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	124.229787088282	1238	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTTTTCTGTAGAAATG	NA	False	NA	NA	False	ATTAAA	-20	NA	144441816	144610678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_144442012_144445713_144445799_144459111_144459348_144477677_144477785_144588820_144588994_144610130
ENSMUSG00000027430.13_144556729_144610678_1	chr2	+	815	3	NNC	ENSMUSG00000027430.13	novel	1350	6	NA	NA	-17005	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	144	152	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTTTTCTGTAGAAATG	414	False	NA	NA	False	ATTAAA	-20	NA	144556728	144610678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_144556823_144588820_144588994_144610130
ENSMUSG00000027433.6_146854916_146919579_1	chr2	+	3093	30	FSM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	0	341	0	-341	multi-exon	TRUE	canonical	3	956	junction_9	74.1082057489866	1066	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTTATCTGTGTGTAT	NA	False	NA	18	True	AATAAA	-19	NA	146854915	146919579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
ENSMUSG00000027454.11_150751514_150773200_1	chr2	+	1082	7	NNC	ENSMUSG00000027454.11	novel	1087	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	165.07338435442	2317	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAATCTCCTGGTAGCTT	2422	False	NA	23	True	AATAAA	-30	NA	150751513	150773200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767801_150767919_150769961_150770032_150772760
ENSMUSG00000027454.11_150751514_150773200_2	chr2	+	1081	7	NNC	ENSMUSG00000027454.11	novel	1087	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	164.972135694352	2285	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAATCTCCTGGTAGCTT	2422	False	NA	23	True	AATAAA	-30	NA	150751513	150773200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767807_150767919_150769961_150770037_150772760
ENSMUSG00000027455.17_151336213_151353225_1	chr2	+	559	3	NNC	ENSMUSG00000027455.17	novel	1364	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	17	junction_1	722	143	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACCAATTCTGTTATAT	NA	False	NA	19	True	AAGAAA	-1	NA	151336212	151353225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_151336333_151351553_151351594_151352826
ENSMUSG00000027455.17_151336213_151353225_2	chr2	+	1355	9	NNC	ENSMUSG00000027455.17	novel	1364	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	455.935011130972	2381	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACCAATTCTGTTATAT	NA	False	NA	19	True	AAGAAA	-1	NA	151336212	151353225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_151336333_151338503_151338602_151342643_151342710_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
ENSMUSG00000027455.17_151336213_151353225_3	chr2	+	1351	9	NNC	ENSMUSG00000027455.17	novel	1364	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	463.439855860499	3720	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACCAATTCTGTTATAT	NA	False	NA	19	True	AAGAAA	-1	NA	151336212	151353225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_151336333_151338503_151338602_151342634_151342710_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351441_151351594_151352826
ENSMUSG00000027455.17_151336213_151353225_4	chr2	+	1357	9	NNC	ENSMUSG00000027455.17	novel	1364	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	459.071004856547	4242	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACCAATTCTGTTATAT	NA	False	NA	19	True	AAGAAA	-1	NA	151336212	151353225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_151336333_151338503_151338602_151342634_151342710_151344933_151345100_151346030_151346124_151347272_151347376_151348166_151348305_151351428_151351594_151352826
ENSMUSG00000027456.9_151418117_151431925_1	chr2	+	1439	9	NNC	ENSMUSG00000027456.9	novel	1399	9	NA	NA	3575	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10.0987313559674	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCGGTCATGAAAGTTCC	NA	False	NA	19	True	AATAAA	-19	NA	151418116	151431925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_151418240_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
ENSMUSG00000027463.15_151838455_151850906_1	chr2	+	2397	5	FSM	ENSMUSG00000027463.15	ENSMUST00000073228.12	2669	5	0	272	0	-236	multi-exon	FALSE	canonical	3	44	junction_1	24.8294180358703	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATGGGCTGTGTACACA	NA	False	NA	13	True	ATTAAA	-17	NA	151838454	151850906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_151838572_151845971_151846599_151847451_151847940_151849400_151849525_151849865
ENSMUSG00000027463.15_151841817_151850906_1	chr2	+	2322	5	FSM	ENSMUSG00000027463.15	ENSMUST00000109861.8	2590	5	32	236	0	-236	multi-exon	FALSE	canonical	3	48	junction_1	23.0976189249022	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATGGGCTGTGTACACA	NA	False	NA	13	True	ATTAAA	-17	NA	151841816	151850906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_151841859_151845971_151846599_151847451_151847940_151849400_151849525_151849865
ENSMUSG00000027469.17_152689915_152735936_1	chr2	+	3016	18	FSM	ENSMUSG00000027469.17	ENSMUST00000028969.9	3654	18	0	638	0	-638	multi-exon	FALSE	canonical	3	159	junction_1	172.681016802699	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGTGGTTTCAGTCAC	2725	False	NA	15	True	AATAAA	-14	NA	152689914	152735936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_152690218_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ENSMUSG00000027469.17_152689915_152735936_2	chr2	+	2825	18	FSM	ENSMUSG00000027469.17	ENSMUST00000178997.8	4161	18	31	1305	0	-638	multi-exon	FALSE	canonical	3	176	junction_2	164.31464036434	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGTGGTTTCAGTCAC	2725	False	NA	15	True	AATAAA	-14	NA	152689914	152735936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_152690030_152696840_152696923_152709106_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ENSMUSG00000027469.17_152731137_152735936_1	chr2	+	986	5	ISM	ENSMUSG00000027469.17	ENSMUST00000028969.9	3654	18	41222	638	6948	-638	3prime_fragment	FALSE	canonical	3	736	junction_1	99.0517541490306	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGTGGTTTCAGTCAC	NA	False	NA	15	True	AATAAA	-14	NA	152731136	152735936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
ENSMUSG00000027479.15_153583194_153609255_1	chr2	+	1353	7	NNC	ENSMUSG00000027479.15	novel	7336	7	NA	NA	0	-5975	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	420.157675429382	1598	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAATATGCTTCCATAT	NA	False	NA	14	True	AATAAA	-18	NA	153583193	153609255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603463_153603578_153606866_153607020_153608793
ENSMUSG00000027479.15_153583194_153610282_1	chr2	+	2388	7	FSM	ENSMUSG00000027479.15	ENSMUST00000028981.9	7336	7	0	4948	0	-4948	multi-exon	FALSE	canonical	3	1002	junction_3	91.867204884732	2249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	153583193	153610282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
ENSMUSG00000027479.15_153583194_153610482_1	chr2	+	2588	7	FSM	ENSMUSG00000027479.15	ENSMUST00000028981.9	7336	7	0	4748	0	-4748	multi-exon	FALSE	canonical	3	1002	junction_3	91.867204884732	2305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTCTTCTGAAATGTGT	NA	False	NA	19	True	AATAAA	-20	NA	153583193	153610482	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
ENSMUSG00000027488.13_154218233_154221298_1	chr2	-	1076	4	NNC	ENSMUSG00000027488.13	novel	2131	8	NA	NA	28602	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	56.9580742495936	34	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTCTGTGGTTTGTGTC	NA	False	NA	1	True	AATAAA	-30	NA	154221298	154218232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_154218829_154218926_154219115_154219927_154220125_154221203
ENSMUSG00000027489.16_154386965_154400774_1	chr2	-	1258	12	NIC	ENSMUSG00000027489.16	novel	1829	13	NA	NA	-2	0	intron_retention	TRUE	canonical	3	34	junction_5	10.4470328738723	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACCAGGCTAAAGGCCTG	7323	False	NA	NA	False	ACTAAA	-17	NA	154400774	154386964	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388801_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
ENSMUSG00000027495.5_172187485_172194868_1	chr2	+	816	3	FSM	ENSMUSG00000027495.5	ENSMUST00000028995.5	3617	3	0	2801	0	-2801	multi-exon	FALSE	canonical	3	138	junction_1	7.5	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTTTTTAATGCTGTT	NA	False	NA	NA	False	NA	NA	NA	172187484	172194868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_172187768_172193374_172193545_172194505
ENSMUSG00000027495.5_172187485_172195809_1	chr2	+	1757	3	FSM	ENSMUSG00000027495.5	ENSMUST00000028995.5	3617	3	0	1860	0	-1860	multi-exon	FALSE	canonical	3	138	junction_1	7.5	772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTCTTAATTAGGGTCCT	NA	False	NA	NA	False	AATACA	-15	NA	172187484	172195809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_172187768_172193374_172193545_172194505
ENSMUSG00000027496.16_172198319_172212441_1	chr2	-	1717	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109139.8	1905	9	-15	203	0	-203	multi-exon	FALSE	canonical	3	87	junction_8	405.788969169937	1632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTAAGTGACACCCATTC	NA	False	NA	-16	True	AATAAA	-19	NA	172212441	172198318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212314
ENSMUSG00000027496.16_172198319_172212441_2	chr2	-	1639	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109140.10	1862	9	14	209	0	-203	multi-exon	FALSE	canonical	3	1025	junction_8	140.198965759381	1749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTAAGTGACACCCATTC	NA	False	NA	-16	True	AATAAA	-19	NA	172212441	172198318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212392
ENSMUSG00000027500.11_8574420_8625550_1	chr3	+	957	5	FSM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	0	1116	0	-1085	multi-exon	FALSE	canonical	3	1699	junction_2	84.762535946018	11826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTTGCAGAATGTTTTG	NA	False	NA	10	True	NA	NA	NA	8574419	8625550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325
ENSMUSG00000027500.11_8574575_8625550_1	chr3	+	802	5	FSM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	155	1116	0	-1085	multi-exon	FALSE	canonical	3	1699	junction_2	84.762535946018	11448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTTGCAGAATGTTTTG	NA	False	NA	10	True	NA	NA	NA	8574574	8625550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325
ENSMUSG00000027500.11_8574575_8625550_2	chr3	+	797	5	NNC	ENSMUSG00000027500.11	novel	2073	5	NA	NA	0	-1085	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	788.751030110262	10938	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTTGCAGAATGTTTTG	NA	False	NA	10	True	NA	NA	NA	8574574	8625550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625330
ENSMUSG00000027500.11_8574575_8626666_1	chr3	+	1918	5	FSM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	155	0	0	0	multi-exon	FALSE	canonical	3	1699	junction_2	84.762535946018	12666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTTTGGTCTGGTCTC	NA	False	NA	23	True	AATAAA	-23	NA	8574574	8626666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325
ENSMUSG00000027502.12_172282522_172310791_1	chr2	+	1090	9	FSM	ENSMUSG00000027502.12	ENSMUST00000029005.4	2173	9	46	1037	0	-1037	multi-exon	FALSE	canonical	3	407	junction_4	19.7416912902618	1754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCGTGGTCACTTGCTG	NA	False	NA	10	True	TATAAA	-21	NA	172282521	172310791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_172282660_172286566_172286662_172287246_172287341_172288541_172288682_172288954_172289034_172305096_172305211_172308193_172308252_172308348_172308445_172310515
ENSMUSG00000027506.16_8994494_9069540_1	chr3	-	2233	6	FSM	ENSMUSG00000027506.16	ENSMUST00000120143.8	6317	6	243	3841	-2	164	multi-exon	FALSE	canonical	0	0	junction_1	1105.06589848751	2689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTCTTTTTATTTTTCTT	NA	False	NA	-3	True	AATATA	-17	NA	9069540	8994493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464
ENSMUSG00000027506.16_8994658_9069540_1	chr3	-	2069	6	FSM	ENSMUSG00000027506.16	ENSMUST00000120143.8	6317	6	243	4005	-2	0	multi-exon	FALSE	canonical	0	0	junction_1	1105.06589848751	2341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATAGGTTTCAATATTTA	NA	False	NA	-28	True	AATAAA	-15	NA	9069540	8994657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464
ENSMUSG00000027506.16_8994658_9069540_2	chr3	-	2066	6	NNC	ENSMUSG00000027506.16	novel	6317	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1246.04934091712	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATAGGTTTCAATATTTA	NA	False	NA	-28	True	AATAAA	-15	NA	9069540	8994657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_8996235_9000051_9000101_9009670_9009766_9012536_9012690_9018743_9018860_9069464
ENSMUSG00000027506.16_8995674_9069540_1	chr3	-	1053	6	FSM	ENSMUSG00000027506.16	ENSMUST00000120143.8	6317	6	243	5021	-2	174	multi-exon	FALSE	canonical	0	0	junction_1	1105.06589848751	875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCAGCTACATTTTTTTT	NA	False	NA	-3	True	ATTAAA	-37	NA	9069540	8995673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464
ENSMUSG00000027520.17_63239732_63342093_1	chr1	+	792	6	Fusion	ENSMUSG00000027520.17_ENSMUSG00000086730.3	novel	462	2	NA	NA	-135	7912	multi-exon	FALSE	canonical	3	22	junction_2	8.44748483277715	162	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAATTCAGTCGGTGTTGT	NA	False	NA	NA	False	CATAAA	-22	NA	63239731	63342093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr1_+_63239834_63246673_63246774_63317089_63317143_63319925_63320037_63334074_63334206_63341798
ENSMUSG00000027520.17_63239732_63342363_1	chr1	+	1062	6	Fusion	ENSMUSG00000027520.17_ENSMUSG00000086730.3	novel	462	2	NA	NA	-135	8182	multi-exon	FALSE	canonical	3	22	junction_2	8.44748483277715	205	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAGTATAAATTTAGACAA	NA	False	NA	NA	False	AAAAAG	-4	NA	63239731	63342363	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr1_+_63239834_63246673_63246774_63317089_63317143_63319925_63320037_63334074_63334206_63341798
ENSMUSG00000027523.21_174127049_174188537_1	chr2	+	1624	12	ISM	ENSMUSG00000027523.21	ENSMUST00000109096.9	2465	13	936	0	0	0	3prime_fragment	FALSE	canonical	3	9	junction_1	249.01252914145	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	6194	False	NA	15	True	AATAAA	-19	NA	174127048	174188537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_174127271_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ENSMUSG00000027523.21_174172112_174188537_1	chr2	+	1518	12	FSM	ENSMUSG00000027523.21	ENSMUST00000109087.8	1716	12	230	-32	32	0	multi-exon	FALSE	canonical	3	678	junction_2	91.1435159288239	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	False	NA	15	True	AATAAA	-19	NA	174172111	174188537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_174172228_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ENSMUSG00000027531.17_10379014_10396440_1	chr3	-	2128	9	FSM	ENSMUSG00000027531.17	ENSMUST00000065938.15	4185	9	59	1998	-8	0	multi-exon	FALSE	canonical	3	306	junction_8	38.1901083397259	2720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGGAATACCATTTTCTT	NA	False	NA	-12	True	ATTAAA	-17	NA	10396440	10379013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_10380362_10381162_10381315_10386671_10386781_10387963_10388073_10389111_10389158_10391166_10391272_10393404_10393539_10394002_10394069_10396381
ENSMUSG00000027531.17_10379925_10381223_1	chr3	-	498	2	FSM	ENSMUSG00000027531.17	ENSMUST00000195155.2	734	2	489	-253	489	0	multi-exon	FALSE	canonical	3	364	junction_1	0	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTTTCTCTATGTTCCA	NA	False	NA	NA	False	NA	NA	NA	10381223	10379924	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_10380362_10381162
ENSMUSG00000027534.17_10483997_10505147_1	chr3	-	1497	8	FSM	ENSMUSG00000027534.17	ENSMUST00000029047.12	2288	8	0	791	0	0	multi-exon	FALSE	canonical	3	117	junction_2	14.2771402841703	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	10505147	10483996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_10484284_10485256_10485377_10485799_10485937_10491222_10491293_10499417_10499567_10500505_10500593_10502870_10503345_10504974
ENSMUSG00000027536.7_10432018_10450956_1	chr3	+	609	2	ISM	ENSMUSG00000027536.7	ENSMUST00000029049.7	6188	5	51	9441	0	-9441	5prime_fragment	FALSE	canonical	3	174	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACTCCATAGAATCAT	NA	False	NA	NA	False	ATTAAA	-25	NA	10432017	10450956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_10432282_10450611
ENSMUSG00000027536.7_10432018_10455111_1	chr3	+	851	5	FSM	ENSMUSG00000027536.7	ENSMUST00000029049.7	6188	5	51	5286	0	-5286	multi-exon	FALSE	canonical	3	174	junction_1	13.9709520076479	886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCAGAGACCTGTTTTAT	NA	False	NA	15	True	CATAAA	-22	NA	10432017	10455111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_10432282_10450611_10450790_10452096_10452212_10454608_10454763_10454971
ENSMUSG00000027536.7_10432018_10455301_1	chr3	+	1041	5	FSM	ENSMUSG00000027536.7	ENSMUST00000029049.7	6188	5	51	5096	0	-5096	multi-exon	FALSE	canonical	3	174	junction_1	13.9709520076479	1068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAATTTTACTGACATTTC	NA	False	NA	NA	False	NA	NA	NA	10432017	10455301	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_10432282_10450611_10450790_10452096_10452212_10454608_10454763_10454971
ENSMUSG00000027536.7_10432018_10455459_1	chr3	+	1199	5	FSM	ENSMUSG00000027536.7	ENSMUST00000029049.7	6188	5	51	4938	0	-4938	multi-exon	FALSE	canonical	3	174	junction_1	13.9709520076479	1869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTCTAGTGAGTCTATG	NA	False	NA	9	True	AATAAA	-18	NA	10432017	10455459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_10432282_10450611_10450790_10452096_10452212_10454608_10454763_10454971
ENSMUSG00000027540.14_167774292_167818854_1	chr2	+	1717	9	FSM	ENSMUSG00000027540.14	ENSMUST00000029053.8	4213	9	45	2451	0	2197	multi-exon	FALSE	canonical	3	103	junction_4	11.7997616501351	802	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTGTTGTTTTTAACAT	1105	False	NA	NA	False	AAAAAG	-9	NA	167774291	167818854	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_167774477_167805547_167805639_167806929_167807031_167809648_167809748_167813612_167813751_167815979_167816190_167816648_167816811_167817228_167817450_167818344
ENSMUSG00000027550.15_14598939_14601804_1	chr3	+	621	3	ISM	ENSMUSG00000027550.15	ENSMUST00000165436.2	1518	10	-55	14729	0	-14729	5prime_fragment	FALSE	canonical	3	64	junction_2	22.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGCTACAGT	NA	False	NA	NA	False	AGTAAA	-38	NA	14598938	14601804	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_14599083_14601058_14601265_14601533
ENSMUSG00000027551.16_168735251_168754553_1	chr2	-	2068	5	NIC	ENSMUSG00000027551.16	novel	2848	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	9.69535971483266	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATGTGAGCGTCATTTCC	NA	False	NA	NA	False	AATAAA	-22	NA	168754553	168735250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_168736454_168741704_168741957_168748003_168748067_168748759_168748910_168754153
ENSMUSG00000027551.16_168767281_168797507_1	chr2	-	2753	6	FSM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	-315	0	0	0	multi-exon	FALSE	canonical	3	382	junction_1	95.1075181045116	1161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTGTATTGTATAGTTT	NA	False	NA	0	True	AATAAA	-29	NA	168797507	168767280	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_168768854_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
ENSMUSG00000027552.15_14671349_14676327_1	chr3	+	412	4	NIC	ENSMUSG00000027552.15	novel	1779	8	NA	NA	27618	4958	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	39885	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTCCGGGAAGACGAGC	9470	False	NA	NA	False	NA	NA	NA	14671348	14676327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_14671469_14672236_14672354_14674600_14674718_14676269
ENSMUSG00000027555.9_14706787_14726867_1	chr3	+	1104	7	FSM	ENSMUSG00000027555.9	ENSMUST00000029071.9	2299	7	0	1195	0	-1195	multi-exon	FALSE	canonical	3	101	junction_4	16.344384016808	562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTTCAGCCTTCCTGAC	2179	False	NA	9	True	ATTAAA	-14	NA	14706786	14726867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_14706906_14710096_14710295_14715718_14715838_14719943_14720040_14721288_14721352_14721968_14722125_14726514
ENSMUSG00000027555.9_14706787_14726990_1	chr3	+	1227	7	FSM	ENSMUSG00000027555.9	ENSMUST00000029071.9	2299	7	0	1072	0	-1072	multi-exon	FALSE	canonical	3	101	junction_4	16.344384016808	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAACTGATATTATTCC	2179	False	NA	NA	False	GATAAA	-14	NA	14706786	14726990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_14706906_14710096_14710295_14715718_14715838_14719943_14720040_14721288_14721352_14721968_14722125_14726514
ENSMUSG00000027555.9_14706787_14727456_1	chr3	+	1693	7	FSM	ENSMUSG00000027555.9	ENSMUST00000029071.9	2299	7	0	606	0	-606	multi-exon	FALSE	canonical	3	101	junction_4	16.344384016808	628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTAAGCCATTCATTGCA	2179	False	NA	NA	False	ATTAAA	-25	NA	14706786	14727456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_14706906_14710096_14710295_14715718_14715838_14719943_14720040_14721288_14721352_14721968_14722125_14726514
ENSMUSG00000027560.5_170705663_170721689_1	chr2	+	791	3	NNC	ENSMUSG00000027560.5	novel	1768	8	NA	NA	131936	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	4	565	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTTAGTTCTTTCTGCAC	NA	False	NA	14	True	AATAAA	-15	NA	170705662	170721689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_170705737_170712730_170712852_170721093
ENSMUSG00000027562.13_14951699_14965638_1	chr3	+	1385	7	FSM	ENSMUSG00000027562.13	ENSMUST00000029078.9	1788	7	211	192	0	-192	multi-exon	FALSE	canonical	3	122	junction_4	9.4339811320566	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATTTGTAGCAAAGTTAT	NA	False	NA	12	True	ATTAAA	-22	NA	14951698	14965638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_14951847_14952893_14953092_14960081_14960201_14960594_14960688_14961759_14961823_14962973_14963130_14965030
ENSMUSG00000027562.13_14951699_14965830_1	chr3	+	1577	7	FSM	ENSMUSG00000027562.13	ENSMUST00000029078.9	1788	7	211	0	0	0	multi-exon	FALSE	canonical	3	122	junction_4	9.4339811320566	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGTGCCTGATTGTCT	NA	False	NA	11	True	AATAAA	-14	NA	14951698	14965830	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_14951847_14952893_14953092_14960081_14960201_14960594_14960688_14961759_14961823_14962973_14963130_14965030
ENSMUSG00000027566.16_179678167_179684207_1	chr2	-	890	7	NNC	ENSMUSG00000027566.16	novel	914	7	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1666.80086959687	18003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGATGAGAACCTGTC	NA	False	NA	-12	True	AATAAA	-17	NA	179684207	179678166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_179678367_179678730_179678785_179679171_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179684070
ENSMUSG00000027574.16_180576565_180596513_1	chr2	-	752	5	NIC	ENSMUSG00000027574.16	novel	950	7	NA	NA	-21	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_4	43.688528242549	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATTCGCATCCCTGGT	NA	False	NA	NA	False	NA	NA	NA	180596513	180576564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_180576823_180577735_180577821_180578943_180579005_180584822_180585021_180596363
ENSMUSG00000027575.20_180609038_180623496_1	chr2	+	1880	14	FSM	ENSMUSG00000027575.20	ENSMUST00000029092.13	2714	14	11	823	0	3	multi-exon	FALSE	canonical	3	201	junction_1	25.5745805752046	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGCTAGTTCTTTCTTC	4045	False	NA	NA	False	TTTAAA	-8	NA	180609037	180623496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_180609123_180609394_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180621453_180621514_180622190_180622268_180622829
ENSMUSG00000027581.13_180948252_180956080_1	chr2	-	923	5	FSM	ENSMUSG00000027581.13	ENSMUST00000103045.4	1136	5	213	0	213	0	multi-exon	FALSE	canonical	3	148	junction_1	19.0312243431683	1160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACGTGTGGCTTTTCAT	NA	False	NA	-6	True	AATAAA	-16	NA	180956080	180948251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_180948617_180949008_180949201_180950513_180950690_180950939_180951036_180955986
ENSMUSG00000027582.17_181000283_181007117_4	chr2	+	1710	8	NIC	ENSMUSG00000027582.17	novel	2293	7	NA	NA	-6438	-14495	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGAAGGACGGAGCACGGG	NA	False	NA	NA	False	NA	NA	NA	181000282	181007117	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
ENSMUSG00000027582.17_181001108_181007117_1	chr2	+	953	8	NNC	ENSMUSG00000027582.17	novel	2293	7	NA	NA	-5613	-14495	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGAAGGACGGAGCACGGG	NA	False	NA	NA	False	NA	NA	NA	181001107	181007117	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_181001355_181001431_181001533_181002793_181002933_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
ENSMUSG00000027582.17_181001108_181007117_2	chr2	+	872	8	NNC	ENSMUSG00000027582.17	novel	2293	7	NA	NA	-5613	-14495	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	95	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGAAGGACGGAGCACGGG	NA	False	NA	NA	False	NA	NA	NA	181001107	181007117	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006116_181006192_181006397_181006505_181007011
ENSMUSG00000027582.17_181001108_181007117_5	chr2	+	883	8	NNC	ENSMUSG00000027582.17	novel	2293	7	NA	NA	-5613	-14495	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGAAGGACGGAGCACGGG	NA	False	NA	NA	False	NA	NA	NA	181001107	181007117	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006497_181007005
ENSMUSG00000027582.17_181001108_181007117_7	chr2	+	910	8	NNC	ENSMUSG00000027582.17	novel	2293	7	NA	NA	-5613	-14495	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGAAGGACGGAGCACGGG	NA	False	NA	NA	False	NA	NA	NA	181001107	181007117	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_181001355_181001431_181001533_181002793_181002890_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
ENSMUSG00000027582.17_181001108_181007117_8	chr2	+	877	8	NNC	ENSMUSG00000027582.17	novel	2293	7	NA	NA	-5613	-14495	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGAAGGACGGAGCACGGG	NA	False	NA	NA	False	NA	NA	NA	181001107	181007117	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006497_181007011
ENSMUSG00000027582.17_181007198_181022579_1	chr2	+	1924	7	NNC	ENSMUSG00000027582.17	novel	2072	6	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	46.3204418516634	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTCAGTGGAGACTCAG	NA	False	NA	9	True	ATTAAA	-16	NA	181007197	181022579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_181007286_181007437_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167
ENSMUSG00000027593.16_154633016_154709165_1	chr2	+	1475	9	NIC	ENSMUSG00000027593.16	novel	1747	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	44.2965856472031	802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCTGAGGTGGAATGGT	NA	False	NA	7	True	AATAAA	-17	NA	154633015	154709165	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_154633152_154662926_154663010_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ENSMUSG00000027593.16_154633016_154709165_2	chr2	+	1392	8	NIC	ENSMUSG00000027593.16	novel	1709	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	53.0813776484863	735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCTGAGGTGGAATGGT	NA	False	NA	7	True	AATAAA	-17	NA	154633015	154709165	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_154633152_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ENSMUSG00000027593.16_154633016_154709165_3	chr2	+	1440	9	NIC	ENSMUSG00000027593.16	novel	1759	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	63.9549401922948	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCTGAGGTGGAATGGT	NA	False	NA	7	True	AATAAA	-17	NA	154633015	154709165	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_154633152_154699188_154699454_154701597_154701671_154701830_154701879_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ENSMUSG00000027593.16_154633272_154709165_1	chr2	+	1453	8	FSM	ENSMUSG00000027593.16	ENSMUST00000109701.10	1709	8	256	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	30.0557305480255	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCTGAGGTGGAATGGT	NA	False	NA	7	True	AATAAA	-17	NA	154633271	154709165	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_154633469_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ENSMUSG00000027593.16_154633272_154709165_2	chr2	+	1536	9	FSM	ENSMUSG00000027593.16	ENSMUST00000058089.13	1747	9	195	16	0	0	multi-exon	FALSE	canonical	3	129	junction_2	14.5945195193264	674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCTGAGGTGGAATGGT	NA	False	NA	7	True	AATAAA	-17	NA	154633271	154709165	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_154633469_154662926_154663010_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
ENSMUSG00000027597.16_154901610_154906192_1	chr2	-	1403	5	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	10175	-380	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	483.785593005827	7765	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGCATGTATGTGGCTG	NA	False	NA	-20	True	ATTAAA	-21	NA	154906192	154901609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905989_154906073
ENSMUSG00000027598.17_154975429_154981907_1	chr2	+	1869	2	FSM	ENSMUSG00000027598.17	ENSMUST00000126648.8	1171	2	0	-698	0	698	multi-exon	FALSE	canonical	3	191	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAGAGAGAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	154975428	154981907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_154975506_154980115
ENSMUSG00000027599.10_19186308_19217243_1	chr3	-	2945	7	FSM	ENSMUSG00000027599.10	ENSMUST00000029125.10	3673	7	-14	742	-14	-742	multi-exon	TRUE	canonical	3	251	junction_6	16.1761140780679	1085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGTTATTGTATTTTTAAA	NA	False	NA	-6	True	AATAAA	-20	NA	19217243	19186307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_19188388_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19217073
ENSMUSG00000027599.10_19187600_19217243_1	chr3	-	1635	7	NNC	ENSMUSG00000027599.10	novel	3673	7	NA	NA	-14	-2034	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	91.40280204798	601	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAAAAAAACCTCTAC	NA	False	NA	NA	False	NA	NA	NA	19217243	19187599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_19188370_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19217073
ENSMUSG00000027599.10_19187600_19217243_2	chr3	-	1653	7	FSM	ENSMUSG00000027599.10	ENSMUST00000029125.10	3673	7	-14	2034	-14	-2034	multi-exon	FALSE	canonical	3	251	junction_6	16.1761140780679	992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAAAAAAACCTCTAC	NA	False	NA	NA	False	NA	NA	NA	19217243	19187599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_19188388_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19217073
ENSMUSG00000027599.10_19188077_19217243_1	chr3	-	1176	7	FSM	ENSMUSG00000027599.10	ENSMUST00000029125.10	3673	7	-14	2511	-14	-2511	multi-exon	FALSE	canonical	3	251	junction_6	16.1761140780679	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGACTATGTATGCTGCAT	NA	False	NA	NA	False	AATAAA	-25	NA	19217243	19188076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_19188388_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19217073
ENSMUSG00000027599.10_19188077_19217243_2	chr3	-	1168	7	NNC	ENSMUSG00000027599.10	novel	3673	7	NA	NA	-14	-2511	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	104.175199650503	191	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGACTATGTATGCTGCAT	NA	False	NA	NA	False	AATAAA	-25	NA	19217243	19188076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_19188388_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211849_19217073
ENSMUSG00000027601.14_19242429_19273374_1	chr3	+	1191	8	FSM	ENSMUSG00000027601.14	ENSMUST00000130645.8	2953	8	155	1607	0	-160	multi-exon	FALSE	canonical	3	831	junction_1	130.277568667669	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGGTCTCCTTCCTTCTG	NA	False	NA	10	True	AGTAAA	-18	NA	19242428	19273374	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
ENSMUSG00000027601.14_19242429_19273721_1	chr3	+	1538	8	FSM	ENSMUSG00000027601.14	ENSMUST00000130645.8	2953	8	155	1260	0	1	multi-exon	FALSE	canonical	3	831	junction_1	130.277568667669	953	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGAGTCTCTGTGTTGC	NA	False	NA	6	True	CATAAA	-17	NA	19242428	19273721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
ENSMUSG00000027601.14_19242429_19273883_1	chr3	+	1700	8	FSM	ENSMUSG00000027601.14	ENSMUST00000130645.8	2953	8	155	1098	0	0	multi-exon	FALSE	canonical	3	831	junction_1	130.277568667669	1445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTCTCATCAGTTTAAT	NA	False	NA	20	True	AATAAA	-15	NA	19242428	19273883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
ENSMUSG00000027605.19_155359977_155364191_1	chr2	+	519	2	FSM	ENSMUSG00000027605.19	ENSMUST00000149788.2	3563	2	24	3020	0	-3020	multi-exon	FALSE	canonical	3	60	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTAAAATTAACTAATTG	2116	False	NA	NA	False	ATTAAA	-13	NA	155359976	155364191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_155360205_155363900
ENSMUSG00000027605.19_155359977_155404666_1	chr2	+	2822	18	FSM	ENSMUSG00000027605.19	ENSMUST00000029135.15	2931	18	109	0	0	0	multi-exon	FALSE	canonical	2	49	junction_8	8.02030295659528	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTTTTTTAGGTATCTG	2116	False	NA	19	True	AATAAA	-23	NA	155359976	155404666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_155360205_155363900_155364097_155391110_155391203_155391395_155391500_155391718_155391792_155392022_155392099_155392274_155392390_155397773_155397912_155398252_155398424_155398697_155398832_155399016_155399150_155399229_155399287_155399468_155399550_155400510_155400620_155402541_155402611_155402949_155403127_155403665_155403741_155403872
ENSMUSG00000027605.19_155405109_155434650_1	chr2	+	1865	13	Fusion	ENSMUSG00000027605.19_ENSMUSG00000085010.2	novel	646	3	NA	NA	-5361	-2225	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1989	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGCCGTTACCCGGGCTC	NA	False	NA	NA	False	NA	NA	NA	155405108	155434650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_+_155405640_155406679_155406870_155408722_155408795_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155434613
ENSMUSG00000027605.19_155405109_155434650_2	chr2	+	1847	13	Fusion	ENSMUSG00000027605.19_ENSMUSG00000085010.2	novel	646	3	NA	NA	-5361	-2225	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1110	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGCCGTTACCCGGGCTC	NA	False	NA	NA	False	NA	NA	NA	155405108	155434650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_+_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429389_155429497_155434613
ENSMUSG00000027610.18_155405109_155434650_1	chr2	-	1934	13	NNC	ENSMUSG00000027610.18	novel	1963	13	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_12	289.515243793637	2232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAATGACTCATTGTT	8430	False	NA	-10	True	AATAAA	-11	NA	155434650	155405108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155434554
ENSMUSG00000027610.18_155405109_155434650_2	chr2	-	1869	13	NNC	ENSMUSG00000027610.18	novel	1963	13	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	292.78514116821	2199	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAATGACTCATTGTT	8430	False	NA	-10	True	AATAAA	-11	NA	155434650	155405108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_155405640_155406679_155406870_155408728_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155434613
ENSMUSG00000027610.18_155405109_155434650_3	chr2	-	1785	13	NIC	ENSMUSG00000027610.18	novel	1963	13	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	18	junction_3	290.295347687297	774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAATGACTCATTGTT	8430	False	NA	-10	True	AATAAA	-11	NA	155434650	155405108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_155405640_155406679_155406870_155408722_155408805_155409702_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155434613
ENSMUSG00000027613.16_155661752_155668356_1	chr2	-	1011	6	FSM	ENSMUSG00000027613.16	ENSMUST00000029142.15	1500	6	489	0	0	0	multi-exon	TRUE	canonical	3	1052	junction_5	244.745255316625	2771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTGCTGTGTGTGTGTGT	89	False	NA	-3	True	ATTAAA	-22	NA	155668356	155661751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155662032_155664756_155664939_155665111_155665289_155665784_155665961_155668044_155668131_155668246
ENSMUSG00000027613.16_155661752_155668611_1	chr2	-	1266	6	FSM	ENSMUSG00000027613.16	ENSMUST00000029142.15	1500	6	234	0	-28	0	multi-exon	FALSE	canonical	3	1052	junction_5	244.745255316625	11949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTGCTGTGTGTGTGTGT	NA	False	NA	-3	True	ATTAAA	-22	NA	155668611	155661751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155662032_155664756_155664939_155665111_155665289_155665784_155665961_155668044_155668131_155668246
ENSMUSG00000027618.18_155965570_155976224_1	chr2	-	1553	9	NNC	ENSMUSG00000027618.18	novel	2051	13	NA	NA	5505	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_8	81.7823903722556	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCCTGTCCTGATCCTTG	3231	False	NA	-13	True	AATAAA	-6	NA	155976224	155965569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970357_155970516_155973572_155973708_155974552_155974647_155976098
ENSMUSG00000027620.17_155989860_156022106_1	chr2	-	2039	17	FSM	ENSMUSG00000027620.17	ENSMUST00000029149.13	2711	17	-19	691	-2	0	multi-exon	FALSE	canonical	3	1090	junction_5	453.136943808105	5218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	False	NA	0	True	AATAAA	-15	NA	156022106	155989859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
ENSMUSG00000027620.17_155989860_156022106_2	chr2	-	2057	17	FSM	ENSMUSG00000027620.17	ENSMUST00000109587.9	2810	17	52	701	-2	0	multi-exon	FALSE	canonical	3	1358	junction_5	409.933526432945	5429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	False	NA	0	True	AATAAA	-15	NA	156022106	155989859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
ENSMUSG00000027620.17_156014852_156022106_1	chr2	-	505	4	ISM	ENSMUSG00000027620.17	ENSMUST00000146288.8	754	6	-27	8126	-2	0	5prime_fragment	FALSE	canonical	3	1623	junction_2	325.028545754916	4427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGCAAAAGTCGAGAGCG	NA	False	NA	-6	True	AGTAAA	-34	NA	156022106	156014851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_156014943_156019255_156019306_156021096_156021161_156021806
ENSMUSG00000027620.17_156019281_156022106_1	chr2	-	389	3	ISM	ENSMUSG00000027620.17	ENSMUST00000109584.8	667	4	52	2587	-2	0	5prime_fragment	FALSE	canonical	3	1623	junction_1	363	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGGCCATGAAGAACGTAGC	NA	False	NA	-26	True	NA	NA	NA	156022106	156019280	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_156019306_156021096_156021161_156021806
ENSMUSG00000027620.17_156019509_156022106_1	chr2	-	755	4	ISM	ENSMUSG00000027620.17	ENSMUST00000152919.3	699	5	-37	228	-2	-228	5prime_fragment	FALSE	canonical	3	90	junction_1	977.365279150477	892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTTCTTGATGACTT	NA	False	NA	NA	False	ATTAAA	-17	NA	156022106	156019508	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_156019827_156020799_156020873_156021096_156021161_156021806
ENSMUSG00000027628.11_156389516_156410078_1	chr2	+	2613	4	FSM	ENSMUSG00000027628.11	ENSMUST00000029158.4	3427	4	0	814	0	2	multi-exon	FALSE	canonical	3	133	junction_3	2.16024689946929	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCCTGTGTGAGTCTCTT	NA	False	NA	9	True	ATTAAA	-20	NA	156389515	156410078	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_156389804_156392568_156393370_156397746_156397977_156408784
ENSMUSG00000027637.4_156705230_156715483_1	chr2	+	863	4	FSM	ENSMUSG00000027637.4	ENSMUST00000029165.4	1045	4	182	0	165	0	multi-exon	FALSE	canonical	3	1149	junction_1	99.8031395631754	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTGGCATGCCTGGTA	4824	False	NA	14	True	AATAAA	-18	NA	156705229	156715483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_156705338_156707176_156707281_156714257_156714388_156714962
ENSMUSG00000027637.4_156714377_156715483_1	chr2	+	532	2	ISM	ENSMUSG00000027637.4	ENSMUST00000029165.4	1045	4	9329	0	-85	0	3prime_fragment	FALSE	canonical	3	1366	junction_1	0	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTGGCATGCCTGGTA	NA	False	NA	14	True	AATAAA	-18	NA	156714376	156715483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_156714388_156714962
ENSMUSG00000027642.16_157120979_157167977_2	chr2	+	2494	17	FSM	ENSMUSG00000027642.16	ENSMUST00000116380.9	2756	17	0	262	0	1	multi-exon	TRUE	canonical	3	1870	junction_1	194.730412606121	1604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	18	True	AATAAA	-19	NA	157120978	157167977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
ENSMUSG00000027642.16_157121231_157167977_1	chr2	+	2290	18	NIC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	-115	1	combination_of_known_junctions	FALSE	canonical	3	59	junction_16	718.681058375563	770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	18	True	AATAAA	-19	NA	157121230	157167977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157165142_157165191_157167630
ENSMUSG00000027642.16_157121231_157167977_3	chr2	+	2242	17	FSM	ENSMUSG00000027642.16	ENSMUST00000116380.9	2756	17	252	262	-115	1	multi-exon	FALSE	canonical	3	1870	junction_1	194.730412606121	1505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	18	True	AATAAA	-19	NA	157121230	157167977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
ENSMUSG00000027649.16_157579321_157733011_1	chr2	+	1919	16	FSM	ENSMUSG00000027649.16	ENSMUST00000029178.7	2442	16	0	523	0	-523	multi-exon	FALSE	canonical	3	501	junction_9	43.3601968015214	2644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGGGCTGACATTGTAT	NA	False	NA	14	True	ATTAAA	-14	NA	157579320	157733011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_157579480_157616330_157616520_157621731_157621839_157630911_157631052_157641346_157641445_157648594_157648689_157651384_157651477_157659674_157659748_157659970_157660030_157661373_157661523_157678429_157678612_157710219_157710318_157713027_157713109_157726052_157726191_157726347_157726421_157732824
ENSMUSG00000027649.16_157677944_157733011_1	chr2	+	1038	7	NNC	ENSMUSG00000027649.16	novel	2442	16	NA	NA	46160	-523	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	216.384431561566	992	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGGGCTGACATTGTAT	NA	False	NA	14	True	ATTAAA	-14	NA	157677943	157733011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_157678223_157678429_157678612_157710219_157710318_157713027_157713109_157726052_157726191_157726347_157726421_157732824
ENSMUSG00000027649.16_157678181_157733009_1	chr2	+	799	7	NNC	ENSMUSG00000027649.16	novel	2442	16	NA	NA	46397	-525	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	216.384431561566	276	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCTGGGGCTGACATTGT	NA	False	NA	12	True	ATTAAA	-12	NA	157678180	157733009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_157678223_157678429_157678612_157710219_157710318_157713027_157713109_157726052_157726191_157726347_157726421_157732824
ENSMUSG00000027667.14_32564684_32569471_1	chr3	+	357	4	ISM	ENSMUSG00000027667.14	ENSMUST00000193287.6	2211	7	276	5511	0	2147	5prime_fragment	FALSE	canonical	3	56	junction_1	75.6497778508892	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGACTTTACACCCTTCT	3182	False	NA	NA	False	AAAAAG	-6	NA	32564683	32569471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_32564739_32567149_32567342_32568532_32568604_32569432
ENSMUSG00000027667.14_32564684_32574892_1	chr3	+	1776	6	NIC	ENSMUSG00000027667.14	novel	1988	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	10	junction_3	101.887388817262	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	3182	False	NA	22	True	AATAAA	-22	NA	32564683	32574892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_32564739_32567149_32567342_32568532_32568604_32571177_32571289_32573258_32573394_32573680
ENSMUSG00000027667.14_32564684_32574892_2	chr3	+	1845	7	FSM	ENSMUSG00000027667.14	ENSMUST00000193287.6	2211	7	276	90	0	0	multi-exon	FALSE	canonical	3	56	junction_1	65.8012580089131	749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	3182	False	NA	22	True	AATAAA	-22	NA	32564683	32574892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_32564739_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
ENSMUSG00000027667.14_32564813_32569471_1	chr3	+	371	4	ISM	ENSMUSG00000027667.14	ENSMUST00000191783.6	1988	7	129	5421	0	2147	5prime_fragment	FALSE	canonical	3	110	junction_1	51.1359842859105	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGACTTTACACCCTTCT	3311	False	NA	NA	False	AAAAAG	-6	NA	32564812	32569471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_32564882_32567149_32567342_32568532_32568604_32569432
ENSMUSG00000027667.14_32564813_32574892_1	chr3	+	1859	7	FSM	ENSMUSG00000027667.14	ENSMUST00000191783.6	1988	7	129	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	46.6455309280059	744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	3311	False	NA	22	True	AATAAA	-22	NA	32564812	32574892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_32564882_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
ENSMUSG00000027668.14_32623636_32631828_1	chr3	+	950	3	ISM	ENSMUSG00000027668.14	ENSMUST00000118286.8	2789	17	37933	-326	-4731	326	3prime_fragment	FALSE	canonical	3	546	junction_2	1.5	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGGCCTATCATTGTAGCC	NA	False	NA	22	True	ATTAAA	-19	NA	32623635	32631828	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_32623834_32628382_32628518_32631211
ENSMUSG00000027671.15_32762914_32781122_1	chr3	+	1656	13	NIC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_11	397.893227930978	2735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGCTGGATTTGTCTGTG	NA	False	NA	23	True	AATAAA	-20	NA	32762913	32781122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32779395_32779483_32780670
ENSMUSG00000027671.15_32762914_32781122_2	chr3	+	1752	14	FSM	ENSMUSG00000027671.15	ENSMUST00000029214.14	2010	14	258	0	0	0	multi-exon	FALSE	canonical	3	1234	junction_9	101.670310666418	7886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGCTGGATTTGTCTGTG	NA	False	NA	23	True	AATAAA	-20	NA	32762913	32781122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
ENSMUSG00000027671.15_32762914_32781122_3	chr3	+	1746	14	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	391.781804386728	7830	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGCTGGATTTGTCTGTG	NA	False	NA	23	True	AATAAA	-20	NA	32762913	32781122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774444_32774583_32774665_32776768_32776865_32779395_32779483_32780670
ENSMUSG00000027673.13_32791225_32805380_1	chr3	+	658	6	FSM	ENSMUSG00000027673.13	ENSMUST00000127477.8	1079	6	86	335	0	1	multi-exon	FALSE	canonical	3	2813	junction_1	66.9226419084005	34679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAAGATTCTGTGGCTGGT	NA	False	NA	24	True	AATAAA	-26	NA	32791224	32805380	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805177
ENSMUSG00000027679.14_34131503_34135461_1	chr3	-	570	6	NNC	ENSMUSG00000027679.14	novel	659	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1373.09947199757	33741	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATCAGTGTCTTGGTATA	NA	False	NA	-4	True	AATAAA	-44	NA	34135461	34131502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232_34134307_34134379_34134427_34135334
ENSMUSG00000027679.14_34131583_34135411_1	chr3	-	445	6	FSM	ENSMUSG00000027679.14	ENSMUST00000108195.10	659	6	59	155	0	0	multi-exon	FALSE	canonical	3	3089	junction_3	262.703330774469	11553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCATTAGTCTACTTATGA	NA	False	NA	-84	True	AATAAA	-20	NA	34135411	34131582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232_34134307_34134379_34134432_34135334
ENSMUSG00000027680.16_34074247_34123487_1	chr3	+	1962	16	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_13	330.912972782204	453	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAAATGTTATTTTGTTT	4849	False	NA	13	True	ATTAAA	-16	NA	34074246	34123487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34116054_34116181_34118267_34118469_34123065
ENSMUSG00000027680.16_34074247_34123487_2	chr3	+	2219	16	NIC	ENSMUSG00000027680.16	novel	2459	17	NA	NA	0	1	intron_retention	FALSE	canonical	3	754	junction_14	169.31149465474	3173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAAATGTTATTTTGTTT	4849	False	NA	13	True	ATTAAA	-16	NA	34074246	34123487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
ENSMUSG00000027680.16_34074247_34123487_3	chr3	+	2054	17	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_13	307.253858549815	723	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAAATGTTATTTTGTTT	4849	False	NA	13	True	ATTAAA	-16	NA	34074246	34123487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34116054_34116181_34118267_34118469_34122309_34122402_34123065
ENSMUSG00000027680.16_34074247_34123487_4	chr3	+	2040	16	FSM	ENSMUSG00000027680.16	ENSMUST00000200392.5	3014	16	-10	984	0	1	multi-exon	FALSE	canonical	3	506	junction_15	191.49767622611	2227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAAATGTTATTTTGTTT	4849	False	NA	13	True	ATTAAA	-16	NA	34074246	34123487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
ENSMUSG00000027680.16_34074247_34124121_1	chr3	+	2766	17	FSM	ENSMUSG00000027680.16	ENSMUST00000197694.5	2129	17	-10	-627	0	-350	multi-exon	FALSE	canonical	3	754	junction_15	164.164884719601	5299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTGATTTTTAACTTTC	4849	False	NA	10	True	AATAAA	-14	NA	34074246	34124121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
ENSMUSG00000027680.16_34074247_34124121_2	chr3	+	2674	16	FSM	ENSMUSG00000027680.16	ENSMUST00000200392.5	3014	16	-10	350	0	-350	multi-exon	FALSE	canonical	3	506	junction_15	191.49767622611	3241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTGATTTTTAACTTTC	4849	False	NA	10	True	AATAAA	-14	NA	34074246	34124121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
ENSMUSG00000027694.10_60784435_60786278_1	chr3	+	1599	3	NNC	ENSMUSG00000027694.10	novel	182	2	NA	NA	0	1270	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	920	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGAGACTACTTCTTCTT	NA	False	NA	NA	False	AATAAA	-35	NA	60784434	60786278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_60784468_60784586_60784736_60784861
ENSMUSG00000027694.10_60784435_60786278_2	chr3	+	1725	2	FSM	ENSMUSG00000027694.10	ENSMUST00000193411.2	182	2	0	-1543	0	1270	multi-exon	FALSE	canonical	3	1840	junction_1	0	1925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGAGACTACTTCTTCTT	NA	False	NA	NA	False	AATAAA	-35	NA	60784434	60786278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_60784468_60784586
ENSMUSG00000027699.20_27151372_27207977_1	chr3	-	4066	25	NIC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	581	junction_24	64.5165784034529	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTATGTGTCCTGTCA	1860	False	NA	NA	False	AATAAA	-19	NA	27207977	27151371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207851
ENSMUSG00000027702.8_30678416_30701908_1	chr3	-	1781	11	FSM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	110	0	110	0	multi-exon	TRUE	canonical	3	297	junction_6	40.0710618776194	1288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	-18	True	AATAAA	-19	NA	30701908	30678415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
ENSMUSG00000027702.8_30678416_30702018_1	chr3	-	1580	9	NIC	ENSMUSG00000027702.8	novel	1891	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_2	130.798449436528	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	-18	True	AATAAA	-19	NA	30702018	30678415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_30679052_30684121_30684249_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
ENSMUSG00000027702.8_30678416_30702018_2	chr3	-	1885	11	NNC	ENSMUSG00000027702.8	novel	1891	11	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	117.966774983467	1306	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	-18	True	AATAAA	-19	NA	30702018	30678415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699459_30701818
ENSMUSG00000027702.8_30678708_30701908_1	chr3	-	1489	11	FSM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	110	292	110	-292	multi-exon	FALSE	canonical	3	297	junction_6	40.0710618776194	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGATTCTTAACATAGAGA	NA	False	NA	NA	False	TATAAA	-28	NA	30701908	30678707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
ENSMUSG00000027702.8_30697173_30701908_1	chr3	-	658	4	ISM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	110	18757	110	-18757	5prime_fragment	FALSE	canonical	3	353	junction_2	40.185680147148	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTGGTAAAATGGAATTG	NA	False	NA	NA	False	ATTAAA	-26	NA	30701908	30697172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_30697498_30697596_30697719_30699343_30699465_30701818
ENSMUSG00000027703.17_30678416_30701908_1	chr3	+	1625	10	Genic_Genomic	ENSMUSG00000027703.17	novel	2387	8	NA	NA	-20240	-24540	multi-exon	FALSE	non_canonical	0	0	junction_1	0	308	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGGAAGGCCGCCGTGG	NA	False	NA	NA	False	NA	NA	NA	30678415	30701908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_+_30679052_30684121_30684249_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
ENSMUSG00000027703.17_30712869_30726583_1	chr3	+	788	3	NNC	ENSMUSG00000027703.17	novel	2387	8	NA	NA	10834	3	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	6.5	342	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTGTGGGAAGAATGATA	NA	False	NA	8	True	NA	NA	NA	30712868	30726583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_30713166_30714049_30714247_30726289
ENSMUSG00000027706.9_30847485_30864136_2	chr3	+	424	4	NNC	ENSMUSG00000027706.9	novel	639	3	NA	NA	0	8446	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	383.374780368013	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAAAGAAAGATGGTGA	NA	False	NA	82	True	AAAAAG	-7	NA	30847484	30864136	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_30847533_30854279_30854389_30855208_30855320_30863980
ENSMUSG00000027706.9_30847485_30864136_3	chr3	+	419	4	NNC	ENSMUSG00000027706.9	novel	639	3	NA	NA	0	8446	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	383.374780368013	176	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAAAGAAAGATGGTGA	NA	False	NA	82	True	AAAAAG	-7	NA	30847484	30864136	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_30847533_30854279_30854389_30855208_30855315_30863980
ENSMUSG00000027706.9_30847485_30869541_1	chr3	+	1781	7	ISM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	461	5871	0	-4640	5prime_fragment	FALSE	canonical	3	556	junction_4	93.5194572743495	1759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAGAACTTGGCCAACATT	NA	False	NA	NA	False	NA	NA	NA	30847484	30869541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382
ENSMUSG00000027706.9_30847485_30873893_1	chr3	+	1987	8	FSM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	461	1519	0	-288	multi-exon	FALSE	canonical	3	556	junction_4	88.1522338147515	1923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTACTTATTATTTAGAC	NA	False	NA	12	True	AATAAA	-15	NA	30847484	30873893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648
ENSMUSG00000027706.9_30847485_30873893_2	chr3	+	1363	9	NIC	ENSMUSG00000027706.9	novel	3967	8	NA	NA	0	-288	combination_of_known_junctions	FALSE	canonical	3	39	junction_8	236.604495942068	1910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTACTTATTATTTAGAC	NA	False	NA	12	True	AATAAA	-15	NA	30847484	30873893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648_30873086_30873709
ENSMUSG00000027706.9_30847485_30874238_1	chr3	+	1708	9	NIC	ENSMUSG00000027706.9	novel	3967	8	NA	NA	0	57	combination_of_known_junctions	FALSE	canonical	3	39	junction_8	236.604495942068	2273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGCAAGCCATTGGACTC	NA	False	NA	6	True	AATAAA	-16	NA	30847484	30874238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648_30873086_30873709
ENSMUSG00000027706.9_30847485_30874238_2	chr3	+	2332	8	FSM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	461	1174	0	57	multi-exon	FALSE	canonical	3	556	junction_4	88.1522338147515	3035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGCAAGCCATTGGACTC	NA	False	NA	6	True	AATAAA	-16	NA	30847484	30874238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648
ENSMUSG00000027706.9_30847485_30875412_1	chr3	+	3506	8	FSM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	461	0	0	0	multi-exon	FALSE	canonical	3	556	junction_4	88.1522338147515	3034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGCAGTAGTGATGGATT	NA	False	NA	NA	False	AATAAA	-21	NA	30847484	30875412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648
ENSMUSG00000027708.15_35948868_35986986_1	chr3	-	1731	7	FSM	ENSMUSG00000027708.15	ENSMUST00000108182.10	4980	7	635	2614	-1	591	multi-exon	FALSE	canonical	3	154	junction_3	19.8445346520284	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGGGTATTAGGTTT	NA	False	NA	NA	False	AATATA	-15	NA	35986986	35948867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_35949849_35951612_35951710_35951941_35952025_35970368_35970500_35973149_35973319_35975119_35975337_35986933
ENSMUSG00000027708.15_35949459_35986986_1	chr3	-	1009	6	NIC	ENSMUSG00000027708.15	novel	4980	7	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	59.8351067518058	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCATTCTTGCATAAAGC	NA	False	NA	NA	False	NA	NA	NA	35986986	35949458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_35949849_35951612_35951710_35951941_35952025_35973149_35973319_35975119_35975337_35986933
ENSMUSG00000027708.15_35949459_35986986_2	chr3	-	1140	7	FSM	ENSMUSG00000027708.15	ENSMUST00000108182.10	4980	7	635	3205	-1	0	multi-exon	FALSE	canonical	3	154	junction_3	19.8445346520284	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCATTCTTGCATAAAGC	NA	False	NA	NA	False	NA	NA	NA	35986986	35949458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_35949849_35951612_35951710_35951941_35952025_35970368_35970500_35973149_35973319_35975119_35975337_35986933
ENSMUSG00000027709.10_36030561_36054792_1	chr3	-	1543	10	NIC	ENSMUSG00000027709.10	novel	2455	19	NA	NA	-2	-616	intron_retention	FALSE	canonical	1	2	junction_9	74.3146463805532	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAAAACCCAAA	NA	False	NA	NA	False	NA	NA	NA	36054792	36030560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044968_36048064_36048161_36049929_36050067_36054629
ENSMUSG00000027712.14_36503072_36529817_1	chr3	-	1505	13	FSM	ENSMUSG00000027712.14	ENSMUST00000029266.14	1731	13	226	0	-9	0	multi-exon	FALSE	canonical	3	95	junction_1	8.69985632065266	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTAGGTTTGTGTTT	NA	False	NA	3	True	AATAAA	-21	NA	36529817	36503071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_36503556_36504460_36504584_36504786_36504846_36506335_36506432_36507619_36507714_36511141_36511199_36511607_36511688_36514591_36514683_36516029_36516144_36518116_36518212_36519399_36519485_36529578_36529610_36529721
ENSMUSG00000027714.12_36619014_36626113_1	chr3	+	2779	8	NIC	ENSMUSG00000027714.12	novel	682	3	NA	NA	2769	6237	intron_retention	FALSE	non_canonical	0	0	junction_1	0	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGCCCGCCGGCTGCTGGT	2117	False	NA	NA	False	NA	NA	NA	36619013	36626113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_36620432_36620689_36620824_36621148_36621263_36621872_36622081_36622736_36622961_36623128_36623239_36624884_36625129_36625786
ENSMUSG00000027742.14_52889543_52924641_1	chr3	-	2918	19	FSM	ENSMUSG00000027742.14	ENSMUST00000036665.10	3182	19	17	247	-2	0	multi-exon	FALSE	canonical	3	106	junction_7	14.5610676585896	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTTGTAGTATTTTTATA	NA	False	NA	-1	True	ATTAAA	-18	NA	52924641	52889542	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_52890613_52893821_52893902_52896530_52896585_52897379_52897488_52900175_52900344_52900860_52900993_52903428_52903547_52905677_52905770_52907901_52907967_52909666_52909759_52909833_52909963_52914666_52914761_52916473_52916545_52916893_52916977_52917996_52918109_52920326_52920386_52921235_52921308_52922889_52923034_52924466
ENSMUSG00000027746.14_53764674_53771251_1	chr3	-	1013	6	FSM	ENSMUSG00000027746.14	ENSMUST00000146598.8	4890	6	0	3877	0	569	multi-exon	FALSE	canonical	3	324	junction_3	16.7737890770094	2674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCTTTTTGAGGATTCT	NA	False	NA	-3	True	AATAAA	-24	NA	53771251	53764673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
ENSMUSG00000027746.14_53764837_53771251_1	chr3	-	850	6	FSM	ENSMUSG00000027746.14	ENSMUST00000146598.8	4890	6	0	4040	0	406	multi-exon	FALSE	canonical	3	324	junction_3	16.7737890770094	1737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTATGAGTATAAGTTGC	NA	False	NA	NA	False	ATTAAA	-14	NA	53771251	53764836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
ENSMUSG00000027746.14_53765243_53771251_1	chr3	-	444	6	FSM	ENSMUSG00000027746.14	ENSMUST00000146598.8	4890	6	0	4446	0	0	multi-exon	FALSE	canonical	3	324	junction_3	16.7737890770094	1128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAACAGGGAAAGCGGCC	NA	False	NA	40	True	AATGAA	-15	NA	53771251	53765242	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
ENSMUSG00000027751.14_54604370_54623930_1	chr3	+	2362	16	ISM	ENSMUSG00000027751.14	ENSMUST00000200439.2	3753	26	3836	12254	3836	-328	internal_fragment	FALSE	canonical	3	324	junction_2	65.3122414933747	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTTGACACTTGTCAT	NA	False	NA	11	True	AATAAA	-15	NA	54604369	54623930	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954
ENSMUSG00000027751.14_54632364_54642467_1	chr3	+	960	12	Genic_Genomic	ENSMUSG00000027751.14	novel	2154	10	NA	NA	12705	6280	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19456	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54632363	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_+_54632370_54636097_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027751.14_54636103_54642467_1	chr3	+	948	10	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636315_54636614_54636722_54637185_54637307_54638495_54638638_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027751.14_54636103_54642467_10	chr3	+	935	11	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	804	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636315_54636614_54636708_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027751.14_54636103_54642467_11	chr3	+	940	11	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1468	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641087_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027751.14_54636103_54642467_12	chr3	+	943	10	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641619_54642428
ENSMUSG00000027751.14_54636103_54642467_13	chr3	+	943	11	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2645	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642434
ENSMUSG00000027751.14_54636103_54642467_14	chr3	+	946	10	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639489_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027751.14_54636103_54642467_15	chr3	+	942	11	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3080	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636308_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027751.14_54636103_54642467_16	chr3	+	940	11	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1278	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636315_54636614_54636722_54637194_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027751.14_54636103_54642467_17	chr3	+	1843	9	NIC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	intron_retention	FALSE	non_canonical	0	0	junction_1	0	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_54636315_54636614_54636722_54637185_54637307_54638495_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027751.14_54636103_54642467_18	chr3	+	916	10	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54642424
ENSMUSG00000027751.14_54636103_54642467_19	chr3	+	941	11	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	918	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639540_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027751.14_54636103_54642467_2	chr3	+	934	11	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	636	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641138_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027751.14_54636103_54642467_20	chr3	+	967	11	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639657_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027751.14_54636103_54642467_21	chr3	+	934	11	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	576	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636315_54636614_54636722_54637185_54637292_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027751.14_54636103_54642467_3	chr3	+	1034	10	NIC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	intron_retention	FALSE	non_canonical	0	0	junction_1	0	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027751.14_54636103_54642467_4	chr3	+	987	11	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641792_54642428
ENSMUSG00000027751.14_54636103_54642467_5	chr3	+	942	11	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1401	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639441_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027751.14_54636103_54642467_6	chr3	+	961	11	NIC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	5905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639651_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027751.14_54636103_54642467_7	chr3	+	997	10	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	intron_retention	FALSE	non_canonical	0	0	junction_1	0	510	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639602_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027751.14_54636103_54642467_8	chr3	+	948	10	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636315_54636614_54636722_54637185_54637307_54638495_54638621_54639515_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027751.14_54636103_54642467_9	chr3	+	934	11	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1016	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGCCCTCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	54636102	54642467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54636315_54636629_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027752.16_54636103_54642467_1	chr3	-	943	11	NNC	ENSMUSG00000027752.16	novel	1300	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	646.835960657723	1834	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTCTAGTCCTTACGT	NA	False	NA	-16	True	AATAAA	-23	NA	54642467	54636102	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640157_54641074_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027752.16_54636103_54642467_2	chr3	-	949	11	FSM	ENSMUSG00000027752.16	ENSMUST00000029316.16	1300	11	347	4	0	0	multi-exon	FALSE	canonical	3	1645	junction_10	187.140588863026	14689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTCTAGTCCTTACGT	NA	False	NA	-16	True	AATAAA	-23	NA	54642467	54636102	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027752.16_54636103_54642467_3	chr3	-	944	11	NNC	ENSMUSG00000027752.16	novel	1300	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_3	632.526118037825	2412	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTCTAGTCCTTACGT	NA	False	NA	-16	True	AATAAA	-23	NA	54642467	54636102	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_54636315_54636614_54636722_54637185_54637302_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUSG00000027774.17_67337449_67382401_1	chr3	+	2597	18	FSM	ENSMUSG00000027774.17	ENSMUST00000077271.9	4078	18	20	1461	0	264	multi-exon	TRUE	canonical	0	0	junction_6	154.691388272057	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTATATATAATATTATATA	NA	False	NA	NA	False	AGTAAA	-31	NA	67337448	67382401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382051
ENSMUSG00000027774.17_67337449_67382401_2	chr3	+	2590	18	NNC	ENSMUSG00000027774.17	novel	4078	18	NA	NA	0	264	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	178.038835621949	629	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTATATATAATATTATATA	NA	False	NA	NA	False	AGTAAA	-31	NA	67337448	67382401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382058
ENSMUSG00000027774.17_67357275_67382399_1	chr3	+	1474	10	NNC	ENSMUSG00000027774.17	novel	924	7	NA	NA	-6537	262	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	155.305433832103	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGTATATATAATATTATA	NA	False	NA	NA	False	AGTAAA	-29	NA	67357274	67382399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_67357498_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382051
ENSMUSG00000027775.10_67490074_67510146_1	chr3	+	1587	16	FSM	ENSMUSG00000027775.10	ENSMUST00000029344.10	3011	16	0	1424	0	-1424	multi-exon	TRUE	canonical	3	661	junction_4	69.2886394407882	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTACTTAAAGTGATTCAT	NA	False	NA	NA	False	AATATA	-17	NA	67490073	67510146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_67490311_67491976_67492030_67492930_67493044_67494633_67494677_67495250_67495319_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027
ENSMUSG00000027775.10_67490074_67510422_1	chr3	+	1863	16	FSM	ENSMUSG00000027775.10	ENSMUST00000029344.10	3011	16	0	1148	0	-1148	multi-exon	FALSE	canonical	3	661	junction_4	69.2886394407882	987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTCACTGTGTCCTAGAG	NA	False	NA	6	True	AATAAA	-17	NA	67490073	67510422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_67490311_67491976_67492030_67492930_67493044_67494633_67494677_67495250_67495319_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027
ENSMUSG00000027775.10_67490074_67510422_2	chr3	+	1858	16	NNC	ENSMUSG00000027775.10	novel	3011	16	NA	NA	0	-1148	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	219.360282032398	984	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTCACTGTGTCCTAGAG	NA	False	NA	6	True	AATAAA	-17	NA	67490073	67510422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_67490311_67491976_67492030_67492930_67493044_67494633_67494677_67495250_67495319_67497163_67497273_67499907_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027
ENSMUSG00000027777.16_68479746_68533799_1	chr3	+	1564	7	FSM	ENSMUSG00000027777.16	ENSMUST00000170788.9	1730	7	168	-2	168	2	multi-exon	FALSE	canonical	3	114	junction_1	136.891684675634	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCCTTTTGCTCACTAACA	NA	False	NA	24	True	AATAAA	-26	NA	68479745	68533799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_68479997_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
ENSMUSG00000027787.15_69629365_69656380_1	chr3	+	1762	16	FSM	ENSMUSG00000027787.15	ENSMUST00000029358.15	9135	16	47	7326	0	5	multi-exon	FALSE	canonical	3	839	junction_3	66.7311687960648	7850	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTGTGAAGGTTTCATAA	NA	False	NA	16	True	AATAAA	-26	NA	69629364	69656380	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_69629456_69629741_69629800_69631589_69631725_69633693_69633791_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
ENSMUSG00000027787.15_69629365_69656380_2	chr3	+	1757	16	NNC	ENSMUSG00000027787.15	novel	9135	16	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	247.206112833446	7856	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTGTGAAGGTTTCATAA	NA	False	NA	16	True	AATAAA	-26	NA	69629364	69656380	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_69629456_69629741_69629800_69631589_69631725_69633693_69633786_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
ENSMUSG00000027796.3_54693693_54705038_1	chr3	+	789	4	ISM	ENSMUSG00000027796.3	ENSMUST00000029371.3	5368	6	30690	3640	30690	-3640	3prime_fragment	FALSE	canonical	3	10	junction_1	2.62466929133727	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACGTTTATATCACCGTT	598	False	NA	NA	False	AATACA	-17	NA	54693692	54705038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_54693743_54696606_54696829_54701652_54701910_54704778
ENSMUSG00000027803.15_57365873_57483249_1	chr3	-	1894	7	FSM	ENSMUSG00000027803.15	ENSMUST00000029380.14	4697	7	0	2803	0	-2670	multi-exon	TRUE	canonical	3	192	junction_3	19.06494747494	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTGTATAGATAGTAATT	NA	False	NA	NA	False	TTTAAA	-33	NA	57483249	57365872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_57366532_57369939_57370053_57370863_57370986_57384777_57384978_57409152_57409290_57482243_57482679_57483021
ENSMUSG00000027803.15_57366141_57483249_1	chr3	-	1626	7	FSM	ENSMUSG00000027803.15	ENSMUST00000029380.14	4697	7	0	3071	0	-2938	multi-exon	FALSE	canonical	3	192	junction_3	19.06494747494	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGCCTGCATTTCTGTG	NA	False	NA	-3	True	AATAAA	-19	NA	57483249	57366140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_57366532_57369939_57370053_57370863_57370986_57384777_57384978_57409152_57409290_57482243_57482679_57483021
ENSMUSG00000027804.14_79498672_79510584_1	chr3	+	1379	10	FSM	ENSMUSG00000027804.14	ENSMUST00000029382.13	1752	10	0	373	0	1	multi-exon	FALSE	canonical	3	2177	junction_5	219.851352699843	9894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAATCTCATTTTAAAATG	NA	False	NA	17	True	AATAAA	-16	NA	79498671	79510584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_79498865_79500916_79501058_79502508_79502616_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
ENSMUSG00000027805.17_57749326_57754976_1	chr3	-	1808	3	FSM	ENSMUSG00000027805.17	ENSMUST00000066882.10	2342	3	524	10	-6	0	multi-exon	FALSE	canonical	3	22	junction_1	7	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTCCATTGGACTCCT	NA	False	NA	-6	True	AATAAA	-13	NA	57754976	57749325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_57750736_57752594_57752788_57754771
ENSMUSG00000027808.9_58429390_58433174_1	chr3	-	2320	3	FSM	ENSMUSG00000027808.9	ENSMUST00000029385.9	4611	3	139	2152	139	-2152	multi-exon	FALSE	canonical	3	847	junction_1	36.5	1117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTTGCAGAGTTTTTAT	NA	False	NA	18	True	AATAAA	-36	NA	58433174	58429389	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_58431290_58432503_58432580_58432830
ENSMUSG00000027808.9_58431011_58433174_1	chr3	-	699	3	FSM	ENSMUSG00000027808.9	ENSMUST00000029385.9	4611	3	139	3773	139	-3773	multi-exon	FALSE	canonical	3	847	junction_1	36.5	727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCCAGTAGTAGACCATAC	NA	False	NA	-16	True	AATAAA	-22	NA	58433174	58431010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_58431290_58432503_58432580_58432830
ENSMUSG00000027808.9_58431011_58433313_1	chr3	-	838	3	FSM	ENSMUSG00000027808.9	ENSMUST00000029385.9	4611	3	0	3773	0	-3773	multi-exon	FALSE	canonical	3	847	junction_1	36.5	932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCCAGTAGTAGACCATAC	NA	False	NA	-16	True	AATAAA	-22	NA	58433313	58431010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_58431290_58432503_58432580_58432830
ENSMUSG00000027809.15_79511110_79536046_1	chr3	-	2238	13	FSM	ENSMUSG00000027809.15	ENSMUST00000029386.14	2377	13	124	15	0	0	multi-exon	FALSE	canonical	3	73	junction_10	10.8790701195767	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGAGCATTTATTTATTTA	3708	False	NA	-15	True	AATAAA	-15	NA	79536046	79511109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_79511473_79512211_79512434_79512936_79513120_79517105_79517275_79519218_79519363_79520928_79521070_79522306_79522454_79523230_79523309_79525613_79525733_79526145_79526228_79530044_79530275_79530847_79530986_79535824
ENSMUSG00000027809.15_79529957_79536046_1	chr3	-	678	3	FSM	ENSMUSG00000027809.15	ENSMUST00000149511.2	3740	3	-21	3083	0	-3083	multi-exon	FALSE	canonical	3	110	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAATTGTTAGGTATTAA	3708	False	NA	NA	False	AGTAAA	-26	NA	79536046	79529956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_79530275_79530847_79530986_79535824
ENSMUSG00000027810.15_58433464_58464922_1	chr3	+	2077	14	FSM	ENSMUSG00000027810.15	ENSMUST00000029387.15	2299	14	222	0	0	0	multi-exon	FALSE	canonical	3	611	junction_6	73.3195163601748	1677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	False	NA	5	True	AATAAA	-16	NA	58433463	58464922	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_58433508_58438507_58438578_58444954_58445030_58446948_58447068_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
ENSMUSG00000027811.10_79536386_79539116_1	chr3	+	959	2	FSM	ENSMUSG00000027811.10	ENSMUST00000029388.10	1970	2	0	1011	0	-1011	multi-exon	FALSE	canonical	3	150	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAGGATGAAGACTGTTT	4369	False	NA	NA	False	ATTAAA	-20	NA	79536385	79539116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_79536664_79538435
ENSMUSG00000027820.13_63202869_63247563_1	chr3	+	1025	9	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	0	-4477	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	55.9797675504284	200	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCCAATGTAACACATATT	NA	False	NA	NA	False	AATAAA	-23	NA	63202868	63247563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436
ENSMUSG00000027820.13_63202869_63288519_1	chr3	+	3197	23	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	51.6275000395194	322	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTGAATATTGAAGTTAT	NA	False	NA	7	True	AATAAA	-17	NA	63202868	63288519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
ENSMUSG00000027820.13_63202982_63247689_1	chr3	+	1038	9	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	0	-4351	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	55.9797675504284	180	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATAGGCTAGTAATGGAT	NA	False	NA	NA	False	AATAAA	-30	NA	63202981	63247689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436
ENSMUSG00000027820.13_63203630_63247563_1	chr3	+	971	9	ISM	ENSMUSG00000027820.13	ENSMUST00000029400.7	3782	23	114	41481	114	-4477	5prime_fragment	FALSE	canonical	3	117	junction_1	104.818593293366	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCCAATGTAACACATATT	NA	False	NA	NA	False	AATAAA	-23	NA	63203629	63247563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_63203744_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436
ENSMUSG00000027820.13_63203630_63247689_1	chr3	+	1097	9	ISM	ENSMUSG00000027820.13	ENSMUST00000029400.7	3782	23	114	41355	114	-4351	5prime_fragment	FALSE	canonical	3	117	junction_1	104.818593293366	131	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATAGGCTAGTAATGGAT	NA	False	NA	NA	False	AATAAA	-30	NA	63203629	63247689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_63203744_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436
ENSMUSG00000027823.10_63883527_63924174_1	chr3	+	2273	16	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	0	-5826	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	308.751852895925	2761	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTGTAACTGAGGCTCA	NA	False	NA	16	True	AATAAA	-16	NA	63883526	63924174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923013_63924053
ENSMUSG00000027823.10_63883527_63924174_2	chr3	+	2279	16	FSM	ENSMUSG00000027823.10	ENSMUST00000029405.8	8105	16	0	5826	0	-5826	multi-exon	FALSE	canonical	3	954	junction_10	99.4709114375767	2782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTGTAACTGAGGCTCA	NA	False	NA	16	True	AATAAA	-16	NA	63883526	63924174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053
ENSMUSG00000027823.10_63883527_63924174_3	chr3	+	2272	16	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	0	-5826	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	310.850489249521	2780	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTGTAACTGAGGCTCA	NA	False	NA	16	True	AATAAA	-16	NA	63883526	63924174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904234_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053
ENSMUSG00000027828.13_65289101_65300044_1	chr3	-	932	5	FSM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	0	2025	0	0	multi-exon	FALSE	canonical	3	545	junction_4	56.4225132371822	940	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTCAGAGGTCATGGTA	2716	False	NA	86	True	NA	NA	NA	65300044	65289100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
ENSMUSG00000027834.16_75464854_75548305_1	chr3	+	1594	9	FSM	ENSMUSG00000027834.16	ENSMUST00000029423.9	4091	9	0	2497	0	-2497	multi-exon	FALSE	canonical	3	8	junction_2	2.1650635094611	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTTTTTCATTTTGAA	NA	False	NA	NA	False	AATAAA	-22	NA	75464853	75548305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_75464950_75520386_75520655_75521760_75521992_75523874_75524070_75526425_75526631_75531165_75531264_75545224_75545312_75547555_75547646_75547981
ENSMUSG00000027835.12_75424280_75464118_1	chr3	-	1399	8	FSM	ENSMUSG00000027835.12	ENSMUST00000161137.8	1927	8	45	483	0	303	multi-exon	FALSE	canonical	3	1188	junction_3	125.646735098117	3513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTGTCCTTAATCACTT	NA	False	NA	-14	True	AATAAA	-17	NA	75464118	75424279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_75424909_75428008_75428092_75428337_75428417_75434894_75435022_75436116_75436235_75440847_75440902_75448466_75448686_75464028
ENSMUSG00000027852.15_102965664_102971971_1	chr3	+	1106	6	FSM	ENSMUSG00000027852.15	ENSMUST00000200069.5	831	6	-19	-256	0	256	multi-exon	FALSE	canonical	3	47	junction_5	301.169453962383	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAATTAGTGTTGCTGATT	NA	False	NA	8	True	CATAAA	-18	NA	102965663	102971971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971549
ENSMUSG00000027852.15_102965664_102971971_2	chr3	+	1148	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	63	3259	0	256	multi-exon	FALSE	canonical	3	741	junction_4	34.7870505919787	1529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAATTAGTGTTGCTGATT	NA	False	NA	8	True	CATAAA	-18	NA	102965663	102971971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
ENSMUSG00000027852.15_102965664_102972102_1	chr3	+	1279	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	63	3128	0	387	multi-exon	FALSE	canonical	3	741	junction_4	34.7870505919787	1678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCCTTTTTCCTAAAAGTG	NA	False	NA	NA	False	ATTAAA	-19	NA	102965663	102972102	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
ENSMUSG00000027852.15_102965664_102973140_1	chr3	+	2317	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	63	2090	0	-652	multi-exon	FALSE	canonical	3	741	junction_4	34.7870505919787	1752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGAATGTAAAATGCCA	NA	False	NA	8	True	AATAAA	-22	NA	102965663	102973140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
ENSMUSG00000027852.15_102965788_102971971_1	chr3	+	1122	7	NNC	ENSMUSG00000027852.15	novel	1920	7	NA	NA	105	256	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	289.564615702034	254	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAATTAGTGTTGCTGATT	NA	False	NA	8	True	CATAAA	-18	NA	102965787	102971971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_102965855_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
ENSMUSG00000027852.15_102965910_102971971_1	chr3	+	1091	7	NIC	ENSMUSG00000027852.15	novel	1920	7	NA	NA	0	256	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	287.714219708068	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAATTAGTGTTGCTGATT	NA	False	NA	8	True	CATAAA	-18	NA	102965909	102971971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_102965946_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
ENSMUSG00000027854.13_102903046_102909387_1	chr3	+	965	5	FSM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	22	6388	0	-123	multi-exon	FALSE	canonical	3	364	junction_4	22.0609949911603	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAATGTTGTTTTTCACA	NA	False	NA	NA	False	TATAAA	-13	NA	102903045	102909387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_102903284_102903471_102903578_102904558_102904702_102905805_102905920_102909023
ENSMUSG00000027854.13_102903046_102909531_1	chr3	+	1109	5	FSM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	22	6244	0	21	multi-exon	FALSE	canonical	3	364	junction_4	22.0609949911603	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTTTTTTCTTCCACT	NA	False	NA	22	True	AATACA	-18	NA	102903045	102909531	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_102903284_102903471_102903578_102904558_102904702_102905805_102905920_102909023
ENSMUSG00000027854.13_102903046_102910797_1	chr3	+	2375	5	FSM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	22	4978	0	1287	multi-exon	FALSE	canonical	3	364	junction_4	22.0609949911603	630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGCTCATTTTACTGAG	NA	False	NA	18	True	AATAAA	-15	NA	102903045	102910797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_102903284_102903471_102903578_102904558_102904702_102905805_102905920_102909023
ENSMUSG00000027860.16_102064033_102073256_1	chr3	-	2317	4	ISM	ENSMUSG00000027860.16	ENSMUST00000161021.2	818	5	990	-1463	0	0	3prime_fragment	FALSE	canonical	3	141	junction_3	77.2801541291309	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATCCA	NA	False	NA	NA	False	NA	NA	NA	102073256	102064032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_102065814_102070614_102070850_102072670_102072804_102073088
ENSMUSG00000027860.16_102070323_102073256_1	chr3	-	828	3	FSM	ENSMUSG00000027860.16	ENSMUST00000162361.2	472	3	0	-356	0	179	multi-exon	FALSE	canonical	3	141	junction_2	87.5	790	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCGTCTCTCTGGCCCA	NA	False	NA	-9	True	NA	NA	NA	102073256	102070322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_102070850_102072670_102072804_102073088
ENSMUSG00000027860.16_102070323_102073710_2	chr3	-	857	3	NNC	ENSMUSG00000027860.16	novel	617	3	NA	NA	-454	179	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	154	433	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCGTCTCTCTGGCCCA	NA	False	NA	-9	True	NA	NA	NA	102073710	102070322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_102070850_102072670_102072804_102073513
ENSMUSG00000027860.16_102070502_102073256_1	chr3	-	649	3	FSM	ENSMUSG00000027860.16	ENSMUST00000162361.2	472	3	0	-177	0	0	multi-exon	FALSE	canonical	3	141	junction_2	87.5	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATCTATGTACTTGTGTG	NA	False	NA	-11	True	NA	NA	NA	102073256	102070501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_102070850_102072670_102072804_102073088
ENSMUSG00000027860.16_102070502_102073710_1	chr3	-	717	4	NNC	ENSMUSG00000027860.16	novel	818	5	NA	NA	-454	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_3	127.297551691565	172	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATCTATGTACTTGTGTG	NA	False	NA	-11	True	NA	NA	NA	102073710	102070501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_102070850_102072670_102072804_102073088_102073128_102073513
ENSMUSG00000027865.11_100069834_100113971_1	chr3	+	2545	14	FSM	ENSMUSG00000027865.11	ENSMUST00000029459.10	3008	14	137	326	0	0	multi-exon	FALSE	canonical	3	84	junction_11	11.7054581917706	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTCTTCTCAGAGTCA	NA	False	NA	22	True	AGTAAA	-33	NA	100069833	100113971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_100069982_100077251_100077492_100078213_100078354_100085158_100085313_100085549_100085639_100089992_100090070_100093885_100094046_100095189_100095350_100098201_100098279_100098942_100099020_100101805_100101946_100103858_100103914_100109289_100109434_100113087
ENSMUSG00000027881.15_108810904_108819026_1	chr3	-	2228	6	FSM	ENSMUSG00000027881.15	ENSMUST00000029480.9	3026	6	17	781	0	-441	multi-exon	FALSE	canonical	3	234	junction_4	114.013332553697	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTTTGTAGGTGTGA	6867	False	NA	-2	True	AATAAA	-16	NA	108819026	108810903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_108812079_108812426_108812651_108815102_108815164_108815247_108815400_108815651_108815721_108818479
ENSMUSG00000027882.19_108706310_108747842_1	chr3	-	1737	16	ISM	ENSMUSG00000027882.19	ENSMUST00000102621.11	2419	19	-15	5818	0	1118	5prime_fragment	FALSE	canonical	1	38	junction_7	23.9066703848296	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGCACATGCCTGCTTCA	NA	False	NA	NA	False	NA	NA	NA	108747842	108706309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_108706633_108707370_108707478_108708050_108708190_108709426_108709508_108710861_108710928_108712373_108712432_108712553_108712650_108717192_108717318_108720193_108720285_108723640_108723796_108729103_108729205_108729830_108729910_108733321_108733399_108734341_108734424_108734888_108734939_108747735
ENSMUSG00000027883.16_108561265_108586156_1	chr3	-	2078	12	NIC	ENSMUSG00000027883.16	novel	3498	15	NA	NA	23673	24689	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGGACTCATCGACTCGCT	NA	False	NA	NA	False	NA	NA	NA	108586156	108561264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_108561368_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
ENSMUSG00000027890.18_107947726_107952175_1	chr3	-	1655	8	NNC	ENSMUSG00000027890.18	novel	1462	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	40.2329948866726	492	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCAGATGTCTTTTCCT	NA	False	NA	-6	True	AATAAA	-18	NA	107952175	107947725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950850_107950918_107951210_107951276_107951668_107951745_107951952
ENSMUSG00000027890.18_107947726_107952175_2	chr3	-	1482	8	NNC	ENSMUSG00000027890.18	novel	1462	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	43.5819659389298	362	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCAGATGTCTTTTCCT	NA	False	NA	-6	True	AATAAA	-18	NA	107952175	107947725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950850_107950918_107951210_107951276_107951668_107951745_107952125
ENSMUSG00000027893.15_107570436_107577235_1	chr3	-	2645	9	ISM	ENSMUSG00000027893.15	ENSMUST00000144864.8	1689	10	655	-1363	-410	0	3prime_fragment	FALSE	canonical	3	702	junction_5	32.961862432211	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTAGTCGTGTGTCTTT	NA	False	NA	-4	True	ATTAAA	-23	NA	107577235	107570435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_107572430_107572831_107572953_107574457_107574537_107574955_107575025_107575382_107575482_107575565_107575661_107575982_107576054_107576408_107576498_107577207
ENSMUSG00000027893.15_107570436_107603651_1	chr3	-	3638	17	FSM	ENSMUSG00000027893.15	ENSMUST00000029490.15	3863	17	225	0	170	0	multi-exon	FALSE	canonical	3	702	junction_5	41.8762593094226	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTAGTCGTGTGTCTTT	NA	False	NA	-4	True	ATTAAA	-23	NA	107603651	107570435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_107572430_107572831_107572953_107574457_107574537_107574955_107575025_107575382_107575482_107575565_107575661_107575982_107576054_107576408_107576498_107577207_107577272_107577519_107577637_107578453_107578561_107579357_107579453_107580751_107580855_107581323_107581425_107582326_107582471_107585035_107585148_107603473
ENSMUSG00000027900.16_106455197_106481247_1	chr3	+	1406	10	NIC	ENSMUSG00000027900.16	novel	3271	9	NA	NA	0	-914	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	49.8998997994986	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGTAGTGTTTGCTACT	NA	False	NA	6	True	AATAAA	-15	NA	106455196	106481247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_106455237_106457814_106457992_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
ENSMUSG00000027900.16_106455197_106481247_2	chr3	+	1161	8	NIC	ENSMUSG00000027900.16	novel	3271	9	NA	NA	0	-914	combination_of_known_splicesites	FALSE	canonical	3	4	junction_3	42.6375325701836	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGTAGTGTTTGCTACT	NA	False	NA	6	True	AATAAA	-15	NA	106455196	106481247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_106455237_106459471_106459597_106462479_106462625_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
ENSMUSG00000027900.16_106455197_106481247_3	chr3	+	1229	9	FSM	ENSMUSG00000027900.16	ENSMUST00000067630.13	3271	9	83	1959	0	-914	multi-exon	FALSE	canonical	3	95	junction_2	15.9251177389682	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGTAGTGTTTGCTACT	NA	False	NA	6	True	AATAAA	-15	NA	106455196	106481247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_106455237_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
ENSMUSG00000027900.16_106455197_106481247_4	chr3	+	968	7	FSM	ENSMUSG00000027900.16	ENSMUST00000029507.13	1891	7	9	914	0	-914	multi-exon	FALSE	canonical	1	3	junction_5	45.7298832517887	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGTAGTGTTTGCTACT	NA	False	NA	6	True	AATAAA	-15	NA	106455196	106481247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_106455237_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106480288_106480382_106480890
ENSMUSG00000027900.16_106455197_106481473_1	chr3	+	1455	9	FSM	ENSMUSG00000027900.16	ENSMUST00000067630.13	3271	9	83	1733	0	-688	multi-exon	FALSE	canonical	3	95	junction_2	15.9251177389682	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGCTGTTGTTGTTGT	NA	False	NA	NA	False	AATACA	-21	NA	106455196	106481473	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_106455237_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
ENSMUSG00000027900.16_106455197_106481775_1	chr3	+	1757	9	FSM	ENSMUSG00000027900.16	ENSMUST00000067630.13	3271	9	83	1431	0	-386	multi-exon	FALSE	canonical	3	95	junction_2	15.9251177389682	668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATTGTTCAGTAGTGTA	NA	False	NA	4	True	AATAAA	-13	NA	106455196	106481775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_106455237_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
ENSMUSG00000027901.13_106410299_106455059_2	chr3	+	2025	9	NNC	ENSMUSG00000027901.13	novel	4050	12	NA	NA	9808	44713	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	746	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCGGCAGCACGTTCACGA	NA	False	NA	NA	False	NA	NA	NA	106410298	106455059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106438452_106438595_106440670_106440819_106446505_106446920_106455002
ENSMUSG00000027907.5_93427795_93433595_1	chr3	+	506	3	NNC	ENSMUSG00000027907.5	novel	511	3	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	221.5	7065	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGAGAGTCAGTAGATTT	NA	False	NA	8	True	AATAAA	-26	NA	93427794	93433595	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_93427861_93431357_93431507_93433304
ENSMUSG00000027931.13_90357898_90358760_1	chr3	-	723	2	NNC	ENSMUSG00000027931.13	novel	4066	22	NA	NA	328	0	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_1	0	370	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCTTCTTGGGAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	90358760	90357897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_90358490_90358629
ENSMUSG00000027931.13_90357898_90358760_2	chr3	-	740	2	FSM	ENSMUSG00000027931.13	ENSMUST00000152510.2	949	2	328	-119	328	0	multi-exon	FALSE	canonical	3	173	junction_1	0	761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCTTCTTGGGAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	90358760	90357897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_90358490_90358612
ENSMUSG00000027931.13_90357898_90362400_1	chr3	-	785	4	ISM	ENSMUSG00000027931.13	ENSMUST00000029540.13	4066	22	10773	0	2383	0	3prime_fragment	FALSE	canonical	3	31	junction_3	58.0191539254255	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCTTCTTGGGAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	90362400	90357897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_90358490_90358612_90358705_90362124_90362224_90362398
ENSMUSG00000027931.13_90357898_90362400_2	chr3	-	960	3	ISM	ENSMUSG00000027931.13	ENSMUST00000029540.13	4066	22	10773	0	2383	0	intron_retention	FALSE	canonical	3	97	junction_2	38	770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCTTCTTGGGAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	90362400	90357897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_90358490_90358612_90358705_90362124
ENSMUSG00000027931.13_90357898_90362400_3	chr3	-	828	4	NNC	ENSMUSG00000027931.13	novel	4066	22	NA	NA	2383	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	63.2824356884805	623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCTTCTTGGGAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	90362400	90357897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_90358490_90358612_90358705_90362124_90362224_90362355
ENSMUSG00000027932.15_90292548_90296561_1	chr3	-	1584	10	FSM	ENSMUSG00000027932.15	ENSMUST00000029541.12	2259	10	673	2	-273	0	multi-exon	FALSE	canonical	3	73	junction_6	21.4101625806157	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGGCCCATCTTCGAGA	NA	False	NA	-19	True	AATAAA	-12	NA	90296561	90292547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_90292841_90293556_90293688_90293786_90293885_90294054_90294254_90294370_90294462_90294561_90294757_90294942_90295068_90295634_90295794_90295996_90296207_90296478
ENSMUSG00000027935.15_90121002_90133278_1	chr3	+	1001	8	FSM	ENSMUSG00000027935.15	ENSMUST00000107373.8	1415	8	0	414	0	2	multi-exon	FALSE	canonical	2	6	junction_1	8.56666534317997	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCCATTTGCATTACTTT	NA	False	NA	8	True	ATTAAA	-20	NA	90121001	90133278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_90121130_90129543_90129605_90130833_90130895_90131096_90131175_90131800_90131891_90132008_90132075_90132154_90132209_90132815
ENSMUSG00000027935.15_90128196_90133278_1	chr3	+	1007	8	FSM	ENSMUSG00000027935.15	ENSMUST00000065418.7	1107	8	102	-2	102	2	multi-exon	FALSE	canonical	3	20	junction_1	3.88613443106727	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCCATTTGCATTACTTT	NA	False	NA	8	True	ATTAAA	-20	NA	90128195	90133278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_90128330_90129543_90129605_90130833_90130895_90131096_90131175_90131800_90131891_90132008_90132075_90132154_90132209_90132815
ENSMUSG00000027937.16_90138904_90143145_1	chr3	+	1450	3	NIC	ENSMUSG00000027937.16	novel	1101	5	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_2	180	1395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTAGTGTAATCATTTG	NA	False	NA	4	True	AATAAA	-14	NA	90138903	90143145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_90139819_90141229_90141310_90142690
ENSMUSG00000027937.16_90139295_90143145_1	chr3	+	710	5	FSM	ENSMUSG00000027937.16	ENSMUST00000029546.15	1101	5	391	0	-59	0	multi-exon	FALSE	canonical	3	314	junction_4	18.2260116317312	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTAGTGTAATCATTTG	NA	False	NA	4	True	AATAAA	-14	NA	90139294	90143145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_90139348_90139501_90139540_90139735_90139819_90141229_90141310_90142689
ENSMUSG00000027940.19_89986972_90007911_1	chr3	+	1808	8	FSM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	125	297	0	-292	multi-exon	FALSE	canonical	3	3249	junction_3	140.088164659085	1286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATTTTGAAGTTTTGTT	NA	False	NA	9	True	TTTAAA	-6	NA	89986971	90007911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
ENSMUSG00000027940.19_89986972_90008203_1	chr3	+	2100	8	FSM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	125	5	0	0	multi-exon	FALSE	canonical	3	3249	junction_3	140.088164659085	4999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	13	True	AATAAA	-16	NA	89986971	90008203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
ENSMUSG00000027940.19_89986972_90008203_2	chr3	+	2179	9	NIC	ENSMUSG00000027940.19	novel	2190	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	65	junction_8	1429.67163515788	4934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	13	True	AATAAA	-16	NA	89986971	90008203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_89998319_89998399_90006834
ENSMUSG00000027944.14_89902763_89905554_1	chr3	-	1017	7	NNC	ENSMUSG00000027944.14	novel	1139	7	NA	NA	115	0	at_least_one_novel_splicesite	FALSE	canonical	2	127	junction_6	635.542725200718	3519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTTAGTCTTGGTTT	7640	False	NA	NA	False	AATAAA	-16	NA	89905554	89902762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905311_89905496
ENSMUSG00000027944.14_89902763_89905696_1	chr3	-	1087	7	NNC	ENSMUSG00000027944.14	novel	855	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_6	677.696343013103	3230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTTAGTCTTGGTTT	7498	False	NA	NA	False	AATAAA	-16	NA	89905696	89902762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905311_89905568
ENSMUSG00000027944.14_89902763_89905945_1	chr3	-	1064	7	NNC	ENSMUSG00000027944.14	novel	1139	7	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	671.873913435814	12765	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTTAGTCTTGGTTT	7249	False	NA	NA	False	AATAAA	-16	NA	89905945	89902762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905305_89905834
ENSMUSG00000027944.14_89902763_89905945_2	chr3	-	804	6	FSM	ENSMUSG00000027944.14	ENSMUST00000197725.5	648	6	-18	-138	-18	0	multi-exon	FALSE	canonical	3	12	junction_5	740.896591974885	1116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTTAGTCTTGGTTT	7249	False	NA	NA	False	AATAAA	-16	NA	89905945	89902762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905834
ENSMUSG00000027944.14_89902763_89905945_3	chr3	-	1064	7	NNC	ENSMUSG00000027944.14	novel	1139	7	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	665.983170458033	10066	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTTAGTCTTGGTTT	7249	False	NA	NA	False	AATAAA	-16	NA	89905945	89902762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_89903012_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905311_89905834
ENSMUSG00000027944.14_89902763_89905945_4	chr3	-	882	6	NIC	ENSMUSG00000027944.14	novel	857	6	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_4	744.740115745083	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTTAGTCTTGGTTT	7249	False	NA	NA	False	AATAAA	-16	NA	89905945	89902762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89905044_89905311_89905834
ENSMUSG00000027944.14_89902763_89905945_5	chr3	-	1055	7	NNC	ENSMUSG00000027944.14	novel	1092	7	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	836.343380436529	5741	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTTAGTCTTGGTTT	7249	False	NA	NA	False	AATAAA	-16	NA	89905945	89902762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904873_89905044_89905305_89905834
ENSMUSG00000027944.14_89902763_89905945_6	chr3	-	1170	7	NIC	ENSMUSG00000027944.14	novel	1139	7	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_6	656.238629531125	7709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTTAGTCTTGGTTT	7249	False	NA	NA	False	AATAAA	-16	NA	89905945	89902762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905411_89905834
ENSMUSG00000027951.17_89657935_89658713_1	chr3	+	606	2	ISM	ENSMUSG00000027951.17	ENSMUST00000029563.14	3753	15	19880	0	4983	0	3prime_fragment	FALSE	canonical	3	136	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCATATGTAGCACAGACA	NA	False	NA	20	True	ATTAAA	-20	NA	89657934	89658713	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_89658063_89658235
ENSMUSG00000027952.17_89366425_89402839_1	chr3	+	999	5	NNC	ENSMUSG00000027952.17	novel	1194	5	NA	NA	0	26519	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_4	230.312152306386	505	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCTGTGGCTGTGTTGTC	140	False	NA	NA	False	NA	NA	NA	89366424	89402839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_89366772_89369188_89369253_89371602_89371756_89374853_89374984_89402534
ENSMUSG00000027952.17_89366638_89376316_1	chr3	+	977	5	FSM	ENSMUSG00000027952.17	ENSMUST00000029564.12	1194	5	213	4	0	0	multi-exon	FALSE	canonical	3	519	junction_1	43.1878165690279	4245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGAGCTGGAGACTGAT	353	False	NA	17	True	AATAAA	-16	NA	89366637	89376316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89366772_89369188_89369253_89371602_89371756_89374853_89374984_89375820
ENSMUSG00000027953.14_89175555_89177832_1	chr3	-	890	6	NIC	ENSMUSG00000027953.14	novel	1022	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_5	58.5388759714431	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGCAGAGTGATGTGTT	NA	False	NA	-33	True	AATAAA	-15	NA	89177832	89175554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177258_89177368_89177447_89177777
ENSMUSG00000027961.8_116374743_116388519_1	chr3	+	1849	11	NIC	ENSMUSG00000027961.8	novel	3087	9	NA	NA	18116	11736	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	442	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGGGGTGGGTCCACGGA	NA	False	NA	NA	False	NA	NA	NA	116374742	116388519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_116375260_116376142_116376573_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
ENSMUSG00000027961.8_116374743_116388519_2	chr3	+	1650	11	NIC	ENSMUSG00000027961.8	novel	3087	9	NA	NA	18116	11736	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	169	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGGGGTGGGTCCACGGA	NA	False	NA	NA	False	NA	NA	NA	116374742	116388519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_116375260_116376142_116376374_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
ENSMUSG00000027968.12_127330363_127346889_1	chr3	-	2012	13	FSM	ENSMUSG00000027968.12	ENSMUST00000029588.10	2121	13	109	0	-43	0	multi-exon	FALSE	canonical	3	466	junction_6	145.639680948108	1977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTGGTTTTATTTACA	NA	False	NA	-1	True	AATAAA	-17	NA	127346889	127330362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_127330684_127334193_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
ENSMUSG00000027968.12_127330363_127346998_1	chr3	-	2114	13	NNC	ENSMUSG00000027968.12	novel	2121	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	248.488136873104	2312	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTGGTTTTATTTACA	NA	False	NA	-1	True	AATAAA	-17	NA	127346998	127330362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_127330684_127334193_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340131_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
ENSMUSG00000027968.12_127330363_127346998_2	chr3	-	2115	13	NNC	ENSMUSG00000027968.12	novel	2121	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	248.045134781735	2439	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTGGTTTTATTTACA	NA	False	NA	-1	True	AATAAA	-17	NA	127346998	127330362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_127330684_127334193_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339614_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
ENSMUSG00000027968.12_127340120_127346889_1	chr3	-	692	6	ISM	ENSMUSG00000027968.12	ENSMUST00000029588.10	2121	13	109	9757	-43	0	5prime_fragment	FALSE	canonical	3	772	junction_1	64.3011663968858	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTACTTAGAGTGGCCAA	NA	False	NA	NA	False	AAAACA	-33	NA	127346889	127340119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
ENSMUSG00000027968.12_127340120_127346998_1	chr3	-	801	6	ISM	ENSMUSG00000027968.12	ENSMUST00000029588.10	2121	13	0	9757	0	0	5prime_fragment	FALSE	canonical	3	772	junction_1	64.3011663968858	700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTACTTAGAGTGGCCAA	NA	False	NA	NA	False	AAAACA	-33	NA	127346998	127340119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
ENSMUSG00000027984.9_131034040_131065676_1	chr3	-	1275	6	ISM	ENSMUSG00000027984.9	ENSMUST00000029610.9	1789	8	74	6972	-3	4710	5prime_fragment	FALSE	canonical	3	722	junction_1	33.7283263741325	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGGAAGAATTGGTTTACA	NA	False	NA	NA	False	AATACA	-31	NA	131065676	131034039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
ENSMUSG00000027997.10_129695107_129707599_1	chr3	+	1270	7	FSM	ENSMUSG00000027997.10	ENSMUST00000029626.9	1456	7	33	153	0	-153	multi-exon	FALSE	canonical	3	125	junction_5	8.11206234909197	1149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACACTTTCTAATTCCTA	NA	False	NA	7	True	AATAAA	-16	NA	129695106	129707599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_129695156_129699114_129699157_129699551_129699702_129700049_129700127_129704171_129704348_129705766_129705924_129706980
ENSMUSG00000027998.12_82962862_82979599_2	chr3	+	1748	15	NNC	ENSMUSG00000027998.12	novel	1851	15	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	190.817214065381	1512	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGTTTTATTTCTGAAA	NA	False	NA	27	True	AATAAA	-19	NA	82962861	82979599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_82962962_82964077_82964185_82965969_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977903_82978044_82978496_82978691_82979417
ENSMUSG00000027998.12_82962862_82979599_3	chr3	+	1757	15	NNC	ENSMUSG00000027998.12	novel	1851	15	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	194.098544296342	2557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGTTTTATTTCTGAAA	NA	False	NA	27	True	AATAAA	-19	NA	82962861	82979599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_82962967_82964080_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977903_82978044_82978496_82978691_82979417
ENSMUSG00000027998.12_82962862_82979599_4	chr3	+	1749	15	NNC	ENSMUSG00000027998.12	novel	1851	15	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	193.599997891719	1351	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGTTTTATTTCTGAAA	NA	False	NA	27	True	AATAAA	-19	NA	82962861	82979599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_82962956_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977903_82978044_82978496_82978691_82979417
ENSMUSG00000027998.12_82962862_82979599_5	chr3	+	1746	15	NNC	ENSMUSG00000027998.12	novel	1851	15	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	194.996036066461	1221	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGTTTTATTTCTGAAA	NA	False	NA	27	True	AATAAA	-19	NA	82962861	82979599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973197_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977903_82978044_82978496_82978691_82979417
ENSMUSG00000027999.16_129672463_129688942_1	chr3	+	821	4	FSM	ENSMUSG00000027999.16	ENSMUST00000029629.15	1561	4	208	532	0	336	multi-exon	FALSE	canonical	3	341	junction_1	3.68178700572909	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTGTAAGGACTTTTCA	NA	False	NA	13	True	AATAAA	-20	NA	129672462	129688942	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_129672585_129682529_129682607_129683916_129684083_129688486
ENSMUSG00000027999.16_129672463_129689474_1	chr3	+	1353	4	FSM	ENSMUSG00000027999.16	ENSMUST00000029629.15	1561	4	208	0	0	0	multi-exon	FALSE	canonical	3	341	junction_1	3.68178700572909	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGAGTGTTTTCAAGTCT	NA	False	NA	25	True	AATAAA	-25	NA	129672462	129689474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_129672585_129682529_129682607_129683916_129684083_129688486
ENSMUSG00000028010.17_129618568_129624784_1	chr3	-	1029	7	NNC	ENSMUSG00000028010.17	novel	1271	7	NA	NA	-203	0	at_least_one_novel_splicesite	FALSE	canonical	3	71	junction_6	620.417444593199	10366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTACGTTTATTGAACG	NA	False	NA	-8	True	AATAAA	-15	NA	129624784	129618567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_129618859_129619196_129619266_129620472_129620624_129622553_129622614_129622985_129623141_129624243_129624503_129624740
ENSMUSG00000028010.17_129618568_129624784_2	chr3	-	1003	7	FSM	ENSMUSG00000028010.17	ENSMUST00000029643.15	1271	7	261	7	-203	0	multi-exon	FALSE	canonical	3	868	junction_6	342.204130113397	10393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTACGTTTATTGAACG	NA	False	NA	-8	True	AATAAA	-15	NA	129624784	129618567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_129618859_129619196_129619266_129620472_129620624_129622553_129622614_129622985_129623141_129624243_129624503_129624766
ENSMUSG00000028016.10_132797699_132815307_1	chr3	+	1561	7	FSM	ENSMUSG00000028016.10	ENSMUST00000029650.9	3101	7	98	1442	0	-1442	multi-exon	FALSE	canonical	3	154	junction_1	13.0213499897497	712	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTATTGTTTGTTACATT	NA	False	NA	8	True	AATAAA	-14	NA	132797698	132815307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_132797738_132802508_132802674_132804170_132804324_132806383_132806569_132808117_132808278_132812699_132812847_132814595
ENSMUSG00000028034.16_151916119_151938408_1	chr3	+	2407	20	NNC	ENSMUSG00000028034.16	novel	2526	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	394.085926482441	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916118	151938408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927051_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151938031
ENSMUSG00000028034.16_151916119_151938408_2	chr3	+	2476	21	NNC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	490.410182908145	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916118	151938408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_151916338_151919613_151919705_151920461_151920525_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927051_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
ENSMUSG00000028034.16_151916119_151938408_3	chr3	+	2416	20	NNC	ENSMUSG00000028034.16	novel	2374	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	368.587759275981	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916118	151938408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927051_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
ENSMUSG00000028034.16_151916119_151938408_4	chr3	+	2411	20	NNC	ENSMUSG00000028034.16	novel	2374	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	458.142231964203	230	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916118	151938408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927051_151927720_151927882_151928465_151928618_151928922_151929003_151931721_151931855_151933807_151933883_151937513_151937660_151938031
ENSMUSG00000028034.16_151916119_151938664_1	chr3	+	2672	20	NNC	ENSMUSG00000028034.16	novel	2552	20	NA	NA	0	238	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	368.587759275981	806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTTTAGTATACTTCCA	NA	False	NA	23	True	ATTAAA	-19	NA	151916118	151938664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927051_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
ENSMUSG00000028034.16_151925812_151938408_1	chr3	+	1536	11	NNC	ENSMUSG00000028034.16	novel	2374	20	NA	NA	-1188	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	573.631379894789	95	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151925811	151938408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_151925875_151926101_151926205_151926322_151926424_151926903_151927051_151927720_151927882_151928472_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
ENSMUSG00000028040.8_89241047_89245335_1	chr3	-	1249	4	FSM	ENSMUSG00000028040.8	ENSMUST00000029674.8	1599	4	0	350	0	-350	multi-exon	FALSE	canonical	3	34	junction_1	2.62466929133727	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGGTGGCTCACACCTGT	1612	False	NA	-12	True	AATAAA	-18	NA	89245335	89241046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89241740_89242088_89242158_89242483_89242780_89245144
ENSMUSG00000028044.7_89322779_89325585_1	chr3	-	744	3	FSM	ENSMUSG00000028044.7	ENSMUST00000029679.4	849	3	105	0	-59	0	multi-exon	FALSE	canonical	3	2335	junction_2	153.5	24067	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGTGGTTATAAGACTGT	NA	False	NA	-12	True	ATTAAA	-22	NA	89325585	89322778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89323271_89323580_89323709_89325461
ENSMUSG00000028047.12_89132362_89134144_1	chr3	+	822	3	FSM	ENSMUSG00000028047.12	ENSMUST00000126372.2	426	3	-122	-274	-122	0	multi-exon	FALSE	canonical	3	6	junction_1	4	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTGCAATTGTTTATTT	NA	False	NA	5	True	CATAAA	-19	NA	89132361	89134144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89132732_89133610_89133751_89133832
ENSMUSG00000028057.15_88624183_88637034_1	chr3	+	1297	5	NIC	ENSMUSG00000028057.15	novel	1204	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	56	junction_3	7.24568837309472	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCCTTCAACCTGAACT	2255	False	NA	74	True	NA	NA	NA	88624182	88637034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_88624265_88624632_88624966_88633301_88633376_88633586_88633779_88636418
ENSMUSG00000028062.16_88457126_88460204_1	chr3	-	541	4	FSM	ENSMUSG00000028062.16	ENSMUST00000029698.15	668	4	127	0	-4	0	multi-exon	FALSE	canonical	3	2467	junction_3	160.918889161244	12626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCACCTGCTTTC	1104	False	NA	-6	True	AATAAA	-14	NA	88460204	88457125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460102
ENSMUSG00000028062.16_88457126_88460256_1	chr3	-	587	4	NNC	ENSMUSG00000028062.16	novel	668	4	NA	NA	-56	0	at_least_one_novel_splicesite	FALSE	canonical	2	145	junction_1	1198.31251720446	13511	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCACCTGCTTTC	1052	False	NA	-6	True	AATAAA	-14	NA	88460256	88457125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_88457306_88458002_88458093_88459661_88459825_88460102
ENSMUSG00000028062.16_88459537_88460256_1	chr3	-	442	2	FSM	ENSMUSG00000028062.16	ENSMUST00000145172.2	567	2	125	0	-56	0	multi-exon	FALSE	canonical	3	2467	junction_1	0	625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGAGTACGGTGCTGGCC	1052	False	NA	NA	False	AATAAA	-22	NA	88460256	88459536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88459825_88460102
ENSMUSG00000028063.16_88390513_88392065_1	chr3	-	580	4	ISM	ENSMUSG00000028063.16	ENSMUST00000036252.7	1536	10	8554	0	-151	0	3prime_fragment	FALSE	canonical	3	147	junction_3	9.67241208569794	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCTGCCCTGGCCTTTC	3911	False	NA	-2	True	ATTAAA	-18	NA	88392065	88390512	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_88390721_88391133_88391254_88391353_88391462_88391921
ENSMUSG00000028064.18_88343269_88348311_1	chr3	-	1973	5	FSM	ENSMUSG00000028064.18	ENSMUST00000156108.8	2108	5	135	0	135	0	multi-exon	TRUE	canonical	3	30	junction_4	4.71036092035419	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTTATGGCGTGCTGTG	NA	False	NA	NA	False	ATTAAA	-20	NA	88348311	88343268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88344560_88345109_88345208_88345489_88345648_88345749_88345869_88348004
ENSMUSG00000028066.16_88301450_88317633_1	chr3	-	995	5	NNC	ENSMUSG00000028066.16	novel	1007	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	377.05205210952	4035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCTGTGAGGAGGTTT	NA	False	NA	-6	True	AATAAA	-16	NA	88317633	88301449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_88301867_88303207_88303408_88306441_88306543_88307017_88307124_88317462
ENSMUSG00000028066.16_88301450_88317633_2	chr3	-	1099	6	FSM	ENSMUSG00000028066.16	ENSMUST00000192365.2	802	6	-61	-236	0	0	multi-exon	FALSE	canonical	0	0	junction_2	418.733614604799	4065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCTGTGAGGAGGTTT	NA	False	NA	-6	True	AATAAA	-16	NA	88317633	88301449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88301878_88303020_88303118_88303211_88303408_88306441_88306543_88307017_88307124_88317462
ENSMUSG00000028068.15_87989335_87991664_1	chr3	+	492	2	ISM	ENSMUSG00000028068.15	ENSMUST00000193940.2	1564	3	8	3195	0	-3188	5prime_fragment	FALSE	canonical	3	249	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GCGAAAAAGAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	87989334	87991664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_87989400_87991237
ENSMUSG00000028069.17_87950415_87962639_1	chr3	+	972	8	FSM	ENSMUSG00000028069.17	ENSMUST00000029707.13	1630	8	0	658	0	132	multi-exon	FALSE	canonical	3	156	junction_1	22.2417148068898	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAAAGGAGGAAGCAGC	1719	False	NA	NA	False	NA	NA	NA	87950414	87962639	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_87950487_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
ENSMUSG00000028070.8_87963827_87965818_1	chr3	-	915	6	NNC	ENSMUSG00000028070.8	novel	908	6	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	356.676099563736	6824	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	-4	True	AATAAA	-25	NA	87965818	87963826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_87964084_87964292_87964441_87965030_87965145_87965227_87965339_87965436_87965546_87965642
ENSMUSG00000028070.8_87963827_87965818_2	chr3	-	776	5	NIC	ENSMUSG00000028070.8	novel	908	6	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	75	junction_1	350.462908165757	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	-4	True	AATAAA	-25	NA	87965818	87963826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_87964084_87965030_87965145_87965227_87965339_87965436_87965546_87965633
ENSMUSG00000028070.8_87963827_87965818_3	chr3	-	927	6	NNC	ENSMUSG00000028070.8	novel	908	6	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	356.676099563736	7849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	-4	True	AATAAA	-25	NA	87965818	87963826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_87964084_87964292_87964441_87965030_87965145_87965227_87965339_87965436_87965558_87965642
ENSMUSG00000028070.8_87963827_87965818_4	chr3	-	917	6	NNC	ENSMUSG00000028070.8	novel	908	6	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	356.676099563736	7329	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	-4	True	AATAAA	-25	NA	87965818	87963826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_87964084_87964292_87964441_87965030_87965145_87965227_87965339_87965436_87965539_87965633
ENSMUSG00000028070.8_87963827_87965818_5	chr3	-	915	6	NNC	ENSMUSG00000028070.8	novel	908	6	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	358.285696058327	3751	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	-4	True	AATAAA	-25	NA	87965818	87963826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_87964084_87964292_87964441_87965030_87965136_87965227_87965339_87965436_87965546_87965633
ENSMUSG00000028076.13_86903141_86905103_1	chr3	-	1324	3	FSM	ENSMUSG00000028076.13	ENSMUST00000107620.3	1475	3	151	0	151	0	multi-exon	FALSE	canonical	3	84	junction_1	1.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATCCAGAGGTTTTACTT	NA	False	NA	NA	False	AATAAA	-20	NA	86905103	86903140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_86903909_86903996_86904094_86904644
ENSMUSG00000028081.7_86045247_86049903_1	chr3	-	867	6	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	106	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3839.11278292264	303735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTGTCCATTGATTTG	NA	False	NA	NA	False	AATAAA	-21	NA	86049903	86045246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_86045418_86045789_86045892_86046342_86046556_86048545_86048734_86049004_86049109_86049814
ENSMUSG00000028085.13_85545830_85561471_1	chr3	+	766	4	NNC	ENSMUSG00000028085.13	novel	1820	12	NA	NA	64328	6	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	88.7280489285472	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCCGTGGGTGCTTTGTA	NA	False	NA	15	True	AATAAA	-19	NA	85545829	85561471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_85545941_85552276_85552356_85559587_85559723_85561030
ENSMUSG00000028093.16_97066093_97083834_1	chr3	+	1690	10	NNC	ENSMUSG00000028093.16	novel	1754	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_6	376.195280258656	8129	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATCATGTTGAGATCAA	NA	False	NA	17	True	AATAAA	-17	NA	97066092	97083834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075302_97075391_97075756_97075890_97078965_97079059_97081118_97081215_97082943_97083110_97083646
ENSMUSG00000028101.19_96604399_96613278_1	chr3	+	2823	14	FSM	ENSMUSG00000028101.19	ENSMUST00000064900.16	2931	14	0	108	0	0	multi-exon	FALSE	canonical	3	105	junction_1	24.6852374253431	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	3287	False	NA	5	True	AATAAA	-15	NA	96604398	96613278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96604512_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
ENSMUSG00000028101.19_96613384_96615863_2	chr3	+	1147	8	NIC	ENSMUSG00000028101.19	novel	2931	14	NA	NA	1902	2477	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCACCGCTTGCCTGGCGC	NA	False	NA	NA	False	NA	NA	NA	96613383	96615863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_96613560_96613683_96613845_96614225_96614363_96614517_96614617_96614873_96614967_96615125_96615203_96615307_96615492_96615643
ENSMUSG00000028102.16_96542790_96552045_1	chr3	+	1743	4	FSM	ENSMUSG00000028102.16	ENSMUST00000118557.8	2424	4	44	637	-26	3	multi-exon	FALSE	canonical	3	279	junction_3	9.46337971105226	1599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTTATTCAATTCAAGA	NA	False	NA	12	True	ATTAAA	-19	NA	96542789	96552045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96543060_96543989_96544106_96544446_96544649_96550890
ENSMUSG00000028102.16_96542790_96552045_2	chr3	+	1500	4	FSM	ENSMUSG00000028102.16	ENSMUST00000144962.8	2235	4	98	637	-26	3	multi-exon	FALSE	canonical	3	9	junction_1	127.753234357839	1060	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTTATTCAATTCAAGA	NA	False	NA	12	True	ATTAAA	-19	NA	96542789	96552045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96542817_96543989_96544106_96544446_96544649_96550890
ENSMUSG00000028102.16_96542988_96552045_1	chr3	+	1545	4	FSM	ENSMUSG00000028102.16	ENSMUST00000118557.8	2424	4	242	637	0	3	multi-exon	FALSE	canonical	3	279	junction_3	9.46337971105226	1520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTTATTCAATTCAAGA	NA	False	NA	12	True	ATTAAA	-19	NA	96542987	96552045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96543060_96543989_96544106_96544446_96544649_96550890
ENSMUSG00000028104.15_96485188_96501475_1	chr3	-	1237	7	FSM	ENSMUSG00000028104.15	ENSMUST00000145001.2	607	7	0	-630	0	0	multi-exon	TRUE	canonical	3	25	junction_6	26.9794160220137	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTCTAACAGAGTGATGT	NA	False	NA	0	True	NA	NA	NA	96501475	96485187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_96485905_96487113_96487228_96487331_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96501399
ENSMUSG00000028107.15_95647288_95649715_1	chr3	-	620	4	ISM	ENSMUSG00000028107.15	ENSMUST00000199869.5	3614	12	8549	0	-257	0	3prime_fragment	TRUE	canonical	3	554	junction_1	4.10960933531265	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	9854	False	NA	-19	True	AATAAA	-16	NA	95649715	95647287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627
ENSMUSG00000028107.15_95647288_95649936_1	chr3	-	681	5	ISM	ENSMUSG00000028107.15	ENSMUST00000199869.5	3614	12	8328	0	-478	0	3prime_fragment	FALSE	canonical	3	519	junction_4	17.5410233452897	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	9633	False	NA	-19	True	AATAAA	-16	NA	95649936	95647287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889
ENSMUSG00000028109.15_95466988_95494907_2	chr3	+	1397	13	NNC	ENSMUSG00000028109.15	novel	1444	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	95.7027733837078	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGTTTACCTGAGATA	NA	False	NA	NA	False	AATAAA	-15	NA	95466987	95494907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475087_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
ENSMUSG00000028109.15_95466988_95494907_4	chr3	+	1384	13	NNC	ENSMUSG00000028109.15	novel	1444	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	95.7027733837078	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGTTTACCTGAGATA	NA	False	NA	NA	False	AATAAA	-15	NA	95466987	95494907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95482803_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
ENSMUSG00000028109.15_95466988_95494907_5	chr3	+	1398	15	NNC	ENSMUSG00000028109.15	novel	1444	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	91.7207385357915	1045	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGTTTACCTGAGATA	NA	False	NA	NA	False	AATAAA	-15	NA	95466987	95494907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_95467044_95468530_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
ENSMUSG00000028109.15_95466988_95494907_7	chr3	+	1640	16	NNC	ENSMUSG00000028109.15	novel	1511	16	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_2	105.894412820822	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGTTTACCTGAGATA	NA	False	NA	NA	False	AATAAA	-15	NA	95466987	95494907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_95467035_95467121_95467381_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
ENSMUSG00000028114.17_123161946_123179634_1	chr3	-	2618	11	FSM	ENSMUSG00000028114.17	ENSMUST00000029759.16	2741	11	123	0	0	0	multi-exon	TRUE	canonical	3	213	junction_2	25.8534330408942	1565	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTGTTTTCCTTAGA	NA	False	NA	-2	True	AATAAA	-17	NA	123179634	123161945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_123163340_123164923_123165135_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
ENSMUSG00000028121.9_122213642_122323840_1	chr3	+	3096	12	FSM	ENSMUSG00000028121.9	ENSMUST00000029766.9	3311	12	215	0	170	0	multi-exon	TRUE	canonical	3	116	junction_1	21.0877740616698	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTCTCTTTATTATTGA	NA	False	NA	NA	False	AATATA	-22	NA	122213641	122323840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_122213833_122220093_122220404_122248701_122248742_122298575_122298705_122301774_122302221_122304867_122304972_122305999_122306653_122312911_122313028_122316817_122316990_122318572_122318685_122318935_122319149_122323230
ENSMUSG00000028121.9_122316909_122323840_1	chr3	+	1016	4	ISM	ENSMUSG00000028121.9	ENSMUST00000029766.9	3311	12	103482	0	-1386	0	3prime_fragment	FALSE	canonical	3	159	junction_3	12.7540843131393	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTCTCTTTATTATTGA	NA	False	NA	NA	False	AATATA	-22	NA	122316908	122323840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_122316990_122318572_122318685_122318935_122319149_122323230
ENSMUSG00000028127.11_121552556_121608846_1	chr3	-	3384	23	FSM	ENSMUSG00000028127.11	ENSMUST00000029770.8	3489	23	105	0	0	0	multi-exon	TRUE	canonical	3	145	junction_14	20.5277981251709	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATGTGCCTGACCTTTT	7236	False	NA	-1	True	ATTAAA	-22	NA	121608846	121552555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_121553959_121555063_121555121_121558649_121558755_121562270_121562391_121562815_121562906_121563000_121563067_121563163_121563242_121565951_121566016_121567637_121567711_121567790_121567883_121569079_121569172_121569265_121569364_121569450_121569521_121570645_121570716_121573203_121573347_121575576_121575634_121577659_121577784_121578121_121578220_121579650_121579721_121585382_121585472_121586452_121586552_121590097_121590135_121608657
ENSMUSG00000028133.18_120949495_120965344_1	chr3	-	1036	5	FSM	ENSMUSG00000028133.18	ENSMUST00000106466.10	1484	5	0	448	0	0	multi-exon	FALSE	canonical	3	76	junction_3	13.1244047484067	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATTTGTTTTCATGTTTA	NA	False	NA	-3	True	ATTAAA	-13	NA	120965344	120949494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_120949707_120949835_120949952_120950049_120950166_120952416_120952905_120965240
ENSMUSG00000028133.18_120964678_120965344_1	chr3	-	403	3	FSM	ENSMUSG00000028133.18	ENSMUST00000098650.4	2260	3	-1	1858	0	-1858	multi-exon	FALSE	canonical	1	3	junction_2	1	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATTCTTGTCTTGGCTT	NA	False	NA	NA	False	AAAAAG	-7	NA	120965344	120964677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_120964832_120964923_120965069_120965240
ENSMUSG00000028138.9_138148854_138161016_1	chr3	+	1360	9	FSM	ENSMUSG00000028138.9	ENSMUST00000005964.7	1604	9	0	244	0	12	multi-exon	FALSE	canonical	3	1845	junction_1	151.305103598656	22286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCACATAAACAATTGCTGC	4924	False	NA	-44	True	NA	NA	NA	138148853	138161016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
ENSMUSG00000028138.9_138148872_138161077_1	chr3	+	1403	9	FSM	ENSMUSG00000028138.9	ENSMUST00000005964.7	1604	9	18	183	0	73	multi-exon	FALSE	canonical	3	1845	junction_1	151.305103598656	28864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTGAGTTGAACAT	4942	False	NA	17	True	AATAAA	-14	NA	138148871	138161077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
ENSMUSG00000028145.10_94217443_94239466_1	chr3	+	1353	6	FSM	ENSMUSG00000028145.10	ENSMUST00000049822.10	1781	6	47	381	0	-381	multi-exon	FALSE	canonical	3	18	junction_4	4.47213595499958	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTGCAATTGTATCTTAA	NA	False	NA	NA	False	ATTAAA	-20	NA	94217442	94239466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_94217596_94224696_94224884_94230888_94231049_94231583_94231692_94237068_94237194_94238846
ENSMUSG00000028145.10_94217560_94239847_1	chr3	+	1617	6	FSM	ENSMUSG00000028145.10	ENSMUST00000049822.10	1781	6	164	0	117	0	multi-exon	FALSE	canonical	3	18	junction_4	4.47213595499958	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCTTCTTGTTTTCAC	NA	False	NA	17	True	AATAAA	-27	NA	94217559	94239847	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_94217596_94224696_94224884_94230888_94231049_94231583_94231692_94237068_94237194_94238846
ENSMUSG00000028156.13_138233046_138261975_1	chr3	+	1376	7	FSM	ENSMUSG00000028156.13	ENSMUST00000200020.5	1421	7	860	-815	0	0	multi-exon	FALSE	canonical	3	1289	junction_1	283.691978894168	2043	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTGATCTATGTCTGTG	NA	False	NA	73	True	NA	NA	NA	138233045	138261975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_138233076_138252081_138252189_138253419_138253516_138256023_138256088_138256653_138256768_138259342_138259483_138261150
ENSMUSG00000028156.13_138233046_138262218_1	chr3	+	1619	7	FSM	ENSMUSG00000028156.13	ENSMUST00000200020.5	1421	7	860	-1058	0	243	multi-exon	FALSE	canonical	3	1289	junction_1	283.691978894168	5236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAACTAGATTTGTCCTTT	NA	False	NA	24	True	AATAAA	-25	NA	138233045	138262218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_138233076_138252081_138252189_138253419_138253516_138256023_138256088_138256653_138256768_138259342_138259483_138261150
ENSMUSG00000028156.13_138233046_138262670_1	chr3	+	2071	7	FSM	ENSMUSG00000028156.13	ENSMUST00000200020.5	1421	7	860	-1510	0	695	multi-exon	FALSE	canonical	3	1289	junction_1	283.691978894168	5933	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATATTGGTCAATTGTTG	NA	False	NA	12	True	AATAAA	-27	NA	138233045	138262670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_138233076_138252081_138252189_138253419_138253516_138256023_138256088_138256653_138256768_138259342_138259483_138261150
ENSMUSG00000028163.18_135290416_135300202_1	chr3	-	1740	7	ISM	ENSMUSG00000028163.18	ENSMUST00000129428.8	2520	13	14042	-227	0	0	3prime_fragment	FALSE	canonical	3	48	junction_1	5.39804491356722	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTCTGATCTCTGCAAA	NA	False	NA	0	True	AATAAA	-25	NA	135300202	135290415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_135291277_135295087_135295266_135296076_135296250_135296540_135296608_135297314_135297440_135299591_135299695_135299969
ENSMUSG00000028164.16_135250545_135277165_1	chr3	+	2435	9	ISM	ENSMUSG00000028164.16	ENSMUST00000029814.10	3675	17	59173	0	128	0	3prime_fragment	FALSE	canonical	3	121	junction_1	15.4793208830362	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCATTGAACACCATGTC	8296	False	NA	11	True	AATAAA	-19	NA	135250544	135277165	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_135250605_135253310_135253398_135254960_135255129_135256823_135257043_135260520_135260686_135268965_135269111_135272248_135272392_135273224_135273483_135275975
ENSMUSG00000028165.10_135113616_135129165_1	chr3	-	1397	3	FSM	ENSMUSG00000028165.10	ENSMUST00000029815.8	3361	3	521	1443	0	-1443	multi-exon	FALSE	canonical	3	215	junction_1	1	1000	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAACTCTTGTTGTATTTT	NA	False	NA	-1	True	TTTAAA	-4	NA	135129165	135113615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_135114652_135116771_135116987_135129019
ENSMUSG00000028165.10_135114225_135129165_1	chr3	-	788	3	FSM	ENSMUSG00000028165.10	ENSMUST00000029815.8	3361	3	521	2052	0	1548	multi-exon	FALSE	canonical	3	215	junction_1	1	764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCTTTGTTCTGTTAAA	NA	False	NA	-17	True	AATACA	-15	NA	135129165	135114224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_135114652_135116771_135116987_135129019
ENSMUSG00000028165.10_135114312_135129209_1	chr3	-	745	3	FSM	ENSMUSG00000028165.10	ENSMUST00000029815.8	3361	3	477	2139	-41	1461	multi-exon	FALSE	canonical	3	215	junction_1	1	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATTGGGAATTTAAAGTT	NA	False	NA	-104	True	AATAAA	-21	NA	135129209	135114311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_135114652_135116771_135116987_135129019
ENSMUSG00000028167.16_134987044_135010187_1	chr3	+	1110	10	FSM	ENSMUSG00000028167.16	ENSMUST00000120397.8	1172	10	62	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	10.4880884817015	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTAGTTTTTTTTCTTAA	NA	False	NA	21	True	AATAAA	-31	NA	134987043	135010187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_134987130_134991275_134991429_134994021_134994101_134995315_134995413_134996754_134996864_135000988_135001050_135002580_135002695_135006434_135006494_135007322_135007416_135009928
ENSMUSG00000028173.11_159629085_159640710_1	chr3	+	956	2	ISM	ENSMUSG00000028173.11	ENSMUST00000200191.2	2453	13	83709	-171	74997	171	3prime_fragment	FALSE	canonical	3	35	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACTTCTTGCTTAAAATG	NA	False	NA	16	True	ATTAAA	-27	NA	159629084	159640710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_159629217_159639886
ENSMUSG00000028173.11_159629085_159644303_1	chr3	+	464	3	ISM	ENSMUSG00000028173.11	ENSMUST00000198878.2	2050	13	83711	-3	74997	3	3prime_fragment	FALSE	canonical	3	12	junction_2	11.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTATTTCCGTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	159629084	159644303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_159629217_159639886_159640006_159644090
ENSMUSG00000028175.16_159201088_159221370_1	chr3	+	768	4	ISM	ENSMUSG00000028175.16	ENSMUST00000106041.3	1971	11	-7	13726	0	-13726	5prime_fragment	FALSE	canonical	3	57	junction_3	8.5764535535124	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTTAAATATGCATTATG	NA	False	NA	NA	False	AATAAA	-22	NA	159201087	159221370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141
ENSMUSG00000028179.13_157600060_157630700_1	chr3	-	1626	12	FSM	ENSMUSG00000028179.13	ENSMUST00000118539.2	1815	12	14	175	-12	0	multi-exon	FALSE	canonical	3	948	junction_5	60.9754048777046	2349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGTGGTTTTTTTTTGA	NA	False	NA	-18	True	ATTAAA	-19	NA	157630700	157600059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
ENSMUSG00000028180.19_157240013_157252440_1	chr3	+	1176	11	FSM	ENSMUSG00000028180.19	ENSMUST00000106057.8	2737	11	-12	1573	0	0	multi-exon	FALSE	canonical	3	77	junction_9	297.644569915193	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTCTCATTTGGTCAGA	NA	False	NA	NA	False	TTTAAA	-42	NA	157240012	157252440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157251711_157251787_157252311
ENSMUSG00000028180.19_157240013_157252560_1	chr3	+	1296	11	FSM	ENSMUSG00000028180.19	ENSMUST00000106057.8	2737	11	-12	1453	0	0	multi-exon	FALSE	canonical	3	77	junction_9	297.644569915193	598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACTGTTCCCCAGATAAA	NA	False	NA	NA	False	AGTAAA	-16	NA	157240012	157252560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157251711_157251787_157252311
ENSMUSG00000028180.19_157240013_157252560_2	chr3	+	1221	10	FSM	ENSMUSG00000028180.19	ENSMUST00000106058.8	2924	10	216	1487	0	0	multi-exon	FALSE	canonical	3	697	junction_8	81.8057017542553	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACTGTTCCCCAGATAAA	NA	False	NA	NA	False	AGTAAA	-16	NA	157240012	157252560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157252311
ENSMUSG00000028187.11_146212099_146227168_1	chr3	-	1257	9	FSM	ENSMUSG00000028187.11	ENSMUST00000029838.11	1661	9	16	388	-2	0	multi-exon	FALSE	canonical	3	514	junction_1	36.008462547018	2894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTAGGTATTAAAGTCC	NA	False	NA	-3	True	AATAAA	-25	NA	146227168	146212098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_146212331_146212826_146212954_146213268_146213451_146213896_146213980_146217896_146218051_146218570_146218667_146223480_146223562_146225141_146225199_146226923
ENSMUSG00000028187.11_146212099_146227168_2	chr3	-	1252	9	NNC	ENSMUSG00000028187.11	novel	1661	9	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	187.225131860015	2853	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTAGGTATTAAAGTCC	NA	False	NA	-3	True	AATAAA	-25	NA	146227168	146212098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_146212331_146212826_146212954_146213268_146213446_146213896_146213980_146217896_146218051_146218570_146218667_146223480_146223562_146225141_146225199_146226923
ENSMUSG00000028188.14_146156233_146170022_1	chr3	-	1302	7	NIC	ENSMUSG00000028188.14	novel	1920	15	NA	NA	5472	6718	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGCCTCTTGAAGGGCGGG	NA	False	NA	NA	False	NA	NA	NA	146170022	146156232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_146156386_146160101_146160241_146160702_146160912_146163090_146163263_146164497_146164596_146165433_146165596_146169653
ENSMUSG00000028188.14_146156233_146170828_1	chr3	-	2108	7	NIC	ENSMUSG00000028188.14	novel	1920	15	NA	NA	4666	6718	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	109	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGCCTCTTGAAGGGCGGG	NA	False	NA	NA	False	NA	NA	NA	146170828	146156232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_146156386_146160101_146160241_146160702_146160912_146163090_146163263_146164497_146164596_146165433_146165596_146169653
ENSMUSG00000028191.12_145630112_145640111_1	chr3	+	1851	3	NNC	ENSMUSG00000028191.12	novel	1949	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	167	1929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAATATTTCAGAG	NA	False	NA	87	True	AATATA	-9	NA	145630111	145640111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_145630275_145636167_145636450_145638705
ENSMUSG00000028199.19_154285482_154302732_1	chr3	+	942	5	NIC	ENSMUSG00000028199.19	novel	2505	9	NA	NA	-16866	-14343	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGCCGCCACGGTGGCCGG	NA	False	NA	NA	False	NA	NA	NA	154285481	154302732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_154285929_154296720_154296793_154299353_154299453_154300090_154300172_154302489
ENSMUSG00000028199.19_154302859_154328819_1	chr3	+	1996	9	FSM	ENSMUSG00000028199.19	ENSMUST00000029850.15	2507	9	511	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	25.4447931805311	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGTCTGTCTCGTGTG	NA	False	NA	18	True	AGTAAA	-18	NA	154302858	154328819	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_154302922_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
ENSMUSG00000028211.12_11156441_11170064_1	chr4	+	1117	5	FSM	ENSMUSG00000028211.12	ENSMUST00000132010.8	5432	5	0	4315	0	2050	multi-exon	FALSE	canonical	3	82	junction_4	77.6997425993163	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCCTAGTGTATCAGTGTG	8	True	NA	19	True	AATGAA	-34	NA	11156440	11170064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_11156548_11164310_11164570_11165089_11165448_11167896_11167935_11169709
ENSMUSG00000028212.17_11191736_11204458_1	chr4	+	2678	12	FSM	ENSMUSG00000028212.17	ENSMUST00000108324.4	2908	12	6	224	0	-217	multi-exon	FALSE	canonical	3	208	junction_1	27.8285779741998	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAACTGCTTAAAAGTAAAG	315	False	NA	7	True	AATAAA	-17	NA	11191735	11204458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_11191816_11192680_11192718_11192814_11192912_11192992_11193047_11193925_11194078_11195019_11195156_11197152_11197300_11198728_11198825_11199296_11199432_11201304_11201417_11202189_11202348_11202984
ENSMUSG00000028218.20_12100496_12171871_1	chr4	-	1176	9	NNC	ENSMUSG00000028218.20	novel	1639	9	NA	NA	0	52913	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_5	137.135368796675	2214	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACACAGTCTTTCTTTCAT	126	False	NA	NA	False	ATTAAA	-41	NA	12171871	12100495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_12100591_12153816_12153979_12155648_12155769_12157650_12157765_12164087_12164193_12168222_12168325_12168964_12169034_12170983_12171219_12171697
ENSMUSG00000028218.20_12100496_12171871_2	chr4	-	1176	8	NNC	ENSMUSG00000028218.20	novel	648	7	NA	NA	0	52913	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	130.899556445204	1476	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACACAGTCTTTCTTTCAT	126	False	NA	NA	False	ATTAAA	-41	NA	12171871	12100495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_12100753_12155648_12155769_12157650_12157765_12164087_12164193_12168222_12168325_12168964_12169034_12170983_12171219_12171697
ENSMUSG00000028218.20_12153724_12171871_1	chr4	-	1060	7	NIC	ENSMUSG00000028218.20	novel	1292	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	182.908598910919	106	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTACATAGTCTTTCTTTC	126	False	NA	-42	True	ATTAAA	-39	NA	12171871	12153723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_12153979_12155648_12155769_12164087_12164193_12168222_12168325_12168964_12169034_12170983_12171219_12171697
ENSMUSG00000028223.9_15918927_15945367_1	chr4	-	1132	10	FSM	ENSMUSG00000028223.9	ENSMUST00000029877.9	2959	10	140	1687	-92	-1687	multi-exon	FALSE	canonical	3	139	junction_6	12.6207745648706	713	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTAGTTCTGAGGATC	6	True	NA	-28	True	AATAAA	-16	NA	15945367	15918926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_15919095_15919193_15919257_15919831_15919979_15922484_15922558_15924253_15924354_15929726_15929875_15930913_15931001_15931124_15931183_15932892_15933096_15945282
ENSMUSG00000028229.12_19575162_19602802_1	chr4	+	926	8	ISM	ENSMUSG00000028229.12	ENSMUST00000029888.4	1734	10	-45	4130	0	-4130	5prime_fragment	FALSE	canonical	3	44	junction_7	8.46601850858803	159	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGTATGTATTT	-16	True	NA	NA	False	AAAAAG	-1	NA	19575161	19602802	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_19575328_19580389_19580508_19586775_19586864_19588525_19588686_19595069_19595160_19599613_19599670_19601355_19601444_19602642
ENSMUSG00000028229.12_19575162_19606209_1	chr4	+	1051	9	NNC	ENSMUSG00000028229.12	novel	1734	10	NA	NA	0	-723	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	21.1601039694988	545	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACTGTATGGCTTTTTTTC	-16	True	NA	12	True	TATAAA	-20	NA	19575161	19606209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_19575328_19580389_19580508_19586775_19586864_19588525_19588686_19595069_19595160_19599613_19599670_19601355_19601470_19605402_19605537_19606084
ENSMUSG00000028229.12_19575207_19606209_1	chr4	+	1006	9	NNC	ENSMUSG00000028229.12	novel	1734	10	NA	NA	0	-723	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	21.1601039694988	430	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACTGTATGGCTTTTTTTC	29	True	NA	12	True	TATAAA	-20	NA	19575206	19606209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_19575328_19580389_19580508_19586775_19586864_19588525_19588686_19595069_19595160_19599613_19599670_19601355_19601470_19605402_19605537_19606084
ENSMUSG00000028232.14_3549277_3574809_1	chr4	-	2402	8	NNC	ENSMUSG00000028232.14	novel	2773	9	NA	NA	0	-236	intron_retention	FALSE	canonical	0	0	junction_6	25.7840323946937	154	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTCTAGTAAAAATGTTAT	-11	True	NA	NA	False	AATAAA	-17	NA	3574809	3549276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_3550580_3551751_3551892_3554353_3554415_3560498_3560693_3564092_3564258_3569363_3569753_3570328_3570373_3574703
ENSMUSG00000028232.14_3559924_3574809_1	chr4	-	1473	5	NNC	ENSMUSG00000028232.14	novel	2773	9	NA	NA	0	9419	intron_retention	FALSE	canonical	0	0	junction_3	28.3460755661167	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTACTGTAGATAATTGC	-11	True	NA	NA	False	AATAAA	-18	NA	3574809	3559923	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_3560693_3564092_3564258_3569363_3569753_3570328_3570373_3574703
ENSMUSG00000028234.7_3834473_3835665_1	chr4	-	567	4	FSM	ENSMUSG00000028234.7	ENSMUST00000138502.2	3706	4	0	3139	0	0	multi-exon	FALSE	canonical	3	6653	junction_2	782.301021914767	488441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTTGCTGGCTTTTGTT	NA	False	NA	-40	True	AATAAA	-15	NA	3835665	3834472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_3834684_3834935_3835010_3835191_3835292_3835483
ENSMUSG00000028234.7_3834594_3835665_1	chr4	-	446	4	FSM	ENSMUSG00000028234.7	ENSMUST00000138502.2	3706	4	0	3260	0	-121	multi-exon	FALSE	canonical	3	6653	junction_2	782.301021914767	17281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTACATAGTCCTTCTGA	NA	False	NA	-161	True	NA	NA	NA	3835665	3834593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_3834684_3834935_3835010_3835191_3835292_3835483
ENSMUSG00000028243.6_6191098_6216178_1	chr4	+	1132	8	FSM	ENSMUSG00000028243.6	ENSMUST00000029907.6	6642	8	0	5510	0	-5510	multi-exon	TRUE	canonical	3	103	junction_2	16.4614577676685	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGTTTTCCTGTTATTC	-10	True	NA	NA	False	CATAAA	-30	NA	6191097	6216178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_6191214_6196410_6196515_6202291_6202443_6203776_6203861_6204563_6204674_6208805_6208944_6214638_6214801_6215911
ENSMUSG00000028243.6_6191098_6216563_1	chr4	+	1601	9	NNC	ENSMUSG00000028243.6	novel	6642	8	NA	NA	0	-5125	at_least_one_novel_splicesite	TRUE	canonical	3	6	junction_3	55.7808210767823	361	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTTGTCCTTGTGTTT	-10	True	NA	NA	False	TTTAAA	-20	NA	6191097	6216563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_6191214_6196410_6196515_6198000_6198085_6202291_6202443_6203776_6203861_6204563_6204674_6208805_6208944_6214638_6214801_6215911
ENSMUSG00000028243.6_6191098_6216563_2	chr4	+	1517	8	FSM	ENSMUSG00000028243.6	ENSMUST00000029907.6	6642	8	0	5125	0	-5125	multi-exon	FALSE	canonical	3	103	junction_2	16.4614577676685	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTTGTCCTTGTGTTT	-10	True	NA	NA	False	TTTAAA	-20	NA	6191097	6216563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_6191214_6196410_6196515_6202291_6202443_6203776_6203861_6204563_6204674_6208805_6208944_6214638_6214801_6215911
ENSMUSG00000028247.3_21879673_21910769_1	chr4	+	1258	7	FSM	ENSMUSG00000028247.3	ENSMUST00000029909.3	2651	7	0	1393	0	-1393	multi-exon	FALSE	canonical	3	302	junction_5	29.1414176426306	2963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTGTCACCTAAGAGA	-10	True	NA	23	True	AATAAA	-25	NA	21879672	21910769	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_21879797_21892808_21892936_21896554_21896708_21899057_21899158_21900263_21900507_21908482_21908643_21910418
ENSMUSG00000028247.3_21879673_21910769_2	chr4	+	1253	7	NNC	ENSMUSG00000028247.3	novel	2651	7	NA	NA	0	-1393	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	123.183693004481	2904	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTGTCACCTAAGAGA	-10	True	NA	23	True	AATAAA	-25	NA	21879672	21910769	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_21879792_21892808_21892936_21896554_21896708_21899057_21899158_21900263_21900507_21908482_21908643_21910418
ENSMUSG00000028247.3_21879673_21910945_1	chr4	+	1434	7	FSM	ENSMUSG00000028247.3	ENSMUST00000029909.3	2651	7	0	1217	0	-1217	multi-exon	FALSE	canonical	3	302	junction_5	29.1414176426306	3014	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTTGTCTATGGTATT	-10	True	NA	NA	False	NA	NA	NA	21879672	21910945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_21879797_21892808_21892936_21896554_21896708_21899057_21899158_21900263_21900507_21908482_21908643_21910418
ENSMUSG00000028248.16_21848058_21857990_1	chr4	+	992	3	FSM	ENSMUSG00000028248.16	ENSMUST00000152666.8	3470	3	0	2478	0	0	multi-exon	FALSE	canonical	3	429	junction_1	48	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGTGGTTGCTGGGAATT	-1	True	NA	NA	False	NA	NA	NA	21848057	21857990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_21848140_21854346_21854446_21857179
ENSMUSG00000028248.16_21848058_21875256_1	chr4	+	2851	12	FSM	ENSMUSG00000028248.16	ENSMUST00000029911.12	4545	12	475	1219	0	0	multi-exon	FALSE	canonical	3	306	junction_11	60.0897400518935	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGCACCTTAATTTTAT	-1	True	NA	13	True	AATAAA	-25	NA	21848057	21875256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585_21874673_21874912
ENSMUSG00000028249.16_6365708_6395432_1	chr4	+	1835	9	FSM	ENSMUSG00000028249.16	ENSMUST00000029912.11	2745	9	58	852	0	-223	multi-exon	FALSE	canonical	3	359	junction_4	40.7944542799631	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTAGTGGGTAATATCTAA	-1	True	NA	8	True	AATAAA	-20	NA	6365707	6395432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_6365760_6377076_6377143_6378965_6379048_6380989_6381100_6385025_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
ENSMUSG00000028249.16_6396207_6418315_1	chr4	+	1881	14	NIC	ENSMUSG00000028249.16	novel	2745	9	NA	NA	19366	9892	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAGATCCAGCTTCAGAC	1266	False	NA	NA	False	NA	NA	NA	6396206	6418315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_6396818_6398318_6398429_6398544_6398648_6398808_6398960_6406786_6406871_6408557_6408682_6409089_6409158_6409843_6409912_6413567_6413627_6414963_6415073_6416499_6416664_6417164_6417208_6417745_6417878_6418260
ENSMUSG00000028251.6_21757382_21759739_1	chr4	-	1371	3	ISM	ENSMUSG00000028251.6	ENSMUST00000029915.6	1588	4	7473	0	7473	0	3prime_fragment	FALSE	canonical	3	232	junction_1	23	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGCATGTATTTCTTTAA	7456	False	NA	0	True	AATAAA	-24	NA	21759739	21757381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_21758476_21759369_21759530_21759622
ENSMUSG00000028251.6_21757382_21767212_2	chr4	-	1417	3	NIC	ENSMUSG00000028251.6	novel	1588	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	114	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGCATGTATTTCTTTAA	-17	True	NA	0	True	AATAAA	-24	NA	21767212	21757381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_21758476_21759369_21759530_21767049
ENSMUSG00000028252.21_21727701_21748351_1	chr4	+	1195	12	FSM	ENSMUSG00000028252.21	ENSMUST00000102997.8	3365	12	-25	2195	0	-203	multi-exon	FALSE	canonical	3	192	junction_11	80.4513096421711	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGTGTGTAATTTATTAA	-5	True	NA	NA	False	NA	NA	NA	21727700	21748351	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21748136
ENSMUSG00000028252.21_21727767_21742961_1	chr4	+	904	8	ISM	ENSMUSG00000028252.21	ENSMUST00000108240.3	1406	12	12	5001	0	4437	5prime_fragment	FALSE	canonical	3	397	junction_1	40.2664594309214	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTTTGTTTACTTTTGA	7	True	NA	NA	False	ATTAAA	-23	NA	21727766	21742961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612
ENSMUSG00000028252.21_21727767_21747962_1	chr4	+	1387	12	NNC	ENSMUSG00000028252.21	novel	1406	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	136.383877285664	1075	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTAGTTTTCTGGATTTT	7	True	NA	12	True	AATAAA	-14	NA	21727766	21747962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_21727916_21730403_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482
ENSMUSG00000028252.21_21757382_21767212_1	chr4	+	1494	4	Fusion	ENSMUSG00000028252.21_ENSMUSG00000040455.18	novel	446	4	NA	NA	-9774	7290	multi-exon	FALSE	non_canonical	0	0	junction_1	0	742	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCGCCCCGCAGCCAGCAC	7676	False	NA	NA	False	NA	NA	NA	21757381	21767212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_21758476_21759369_21759425_21759611_21759794_21767049
ENSMUSG00000028252.21_21758185_21767212_2	chr4	+	785	4	Fusion	ENSMUSG00000028252.21_ENSMUSG00000040455.18	novel	446	4	NA	NA	-8971	7290	multi-exon	FALSE	non_canonical	0	0	junction_1	0	344	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCGCCCCGCAGCCAGCAC	8479	False	NA	NA	False	NA	NA	NA	21758184	21767212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_21758476_21759369_21759530_21759622_21759794_21767049
ENSMUSG00000028256.17_144824655_144859654_1	chr3	+	2244	16	NNC	ENSMUSG00000028256.17	novel	913	7	NA	NA	-80	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	26.9686237443935	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAACAGTATAAGTTTTAA	NA	False	NA	NA	False	AATAAA	-21	NA	144824654	144859654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_144824690_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
ENSMUSG00000028256.17_144854779_144859650_1	chr3	+	692	3	ISM	ENSMUSG00000028256.17	ENSMUST00000198808.5	3747	6	9225	4	0	0	3prime_fragment	FALSE	canonical	3	109	junction_2	2.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAATAACAGTATAAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	144854778	144859650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_144854839_144856720_144856847_144859144
ENSMUSG00000028261.14_24898083_24902217_1	chr4	+	1118	2	FSM	ENSMUSG00000028261.14	ENSMUST00000146721.2	2358	2	-48	1288	0	-1268	multi-exon	FALSE	canonical	3	446	junction_1	0	859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTTTGTTCTTTGTAGT	-37	True	NA	19	True	ATTAAA	-19	NA	24898082	24902217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_24898677_24901693
ENSMUSG00000028261.14_24898083_24902217_2	chr4	+	848	3	FSM	ENSMUSG00000028261.14	ENSMUST00000029925.10	3632	3	0	2784	0	-1268	multi-exon	FALSE	canonical	3	446	junction_2	23.5	1957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTTTGTTCTTTGTAGT	-37	True	NA	19	True	ATTAAA	-19	NA	24898082	24902217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_24898303_24898572_24898677_24901693
ENSMUSG00000028261.14_24898083_24902372_1	chr4	+	1003	3	FSM	ENSMUSG00000028261.14	ENSMUST00000029925.10	3632	3	0	2629	0	-1113	multi-exon	FALSE	canonical	3	446	junction_2	23.5	2056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATATTACTACTCTAGAG	-37	True	NA	NA	False	AAGAAA	-31	NA	24898082	24902372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_24898303_24898572_24898677_24901693
ENSMUSG00000028261.14_24898083_24903505_1	chr4	+	2136	3	FSM	ENSMUSG00000028261.14	ENSMUST00000029925.10	3632	3	0	1496	0	0	multi-exon	FALSE	canonical	3	446	junction_2	23.5	2369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTGGTTTTTTCTTTC	-37	True	NA	14	True	AATAAA	-27	NA	24898082	24903505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_24898303_24898572_24898677_24901693
ENSMUSG00000028271.10_142470984_142477395_1	chr3	+	315	2	ISM	ENSMUSG00000028271.10	ENSMUST00000029938.10	1455	7	178	11972	0	3212	5prime_fragment	FALSE	canonical	3	152	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAATAAAGATGAGTAAG	NA	False	NA	NA	False	GATAAA	-13	NA	142470983	142477395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_142471050_142477146
ENSMUSG00000028271.10_142470984_142489367_1	chr3	+	1270	7	NNC	ENSMUSG00000028271.10	novel	1455	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	68.5851052829014	2418	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTGTTATAGTATTAAT	NA	False	NA	8	True	AATAAA	-15	NA	142470983	142489367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_142471050_142477146_142477254_142483951_142484086_142485459_142485600_142485730_142485861_142487100_142487383_142488956
ENSMUSG00000028273.16_141947966_141983598_1	chr3	-	1167	6	ISM	ENSMUSG00000028273.16	ENSMUST00000195975.5	1845	15	113971	-475	26142	475	3prime_fragment	FALSE	canonical	3	150	junction_4	18.7573985403094	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTGTTTAGTGAGTGT	NA	False	NA	NA	False	AATAAA	-20	NA	141983598	141947965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_141948531_141950656_141950773_141953055_141953177_141955090_141955272_141964890_141965054_141983577
ENSMUSG00000028278.15_32983454_33018948_1	chr4	+	1359	7	FSM	ENSMUSG00000028278.15	ENSMUST00000098190.10	5008	7	417	3232	0	130	multi-exon	FALSE	canonical	3	113	junction_4	9.38823140367177	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGTACAATAACAGTGAGA	31	False	NA	7	True	AATAAA	-22	NA	32983453	33018948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_32983608_32995801_32996098_33004150_33004351_33005133_33005249_33007069_33007213_33012903_33013053_33018646
ENSMUSG00000028280.10_33152344_33163588_1	chr4	+	1871	6	ISM	ENSMUSG00000028280.10	ENSMUST00000029947.6	2286	10	19823	0	19823	0	3prime_fragment	FALSE	canonical	3	14	junction_2	4.22374241638857	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGATGTCATCACTGACT	NA	False	NA	8	True	AATAAA	-15	NA	33152343	33163588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_33152637_33157059_33157143_33158036_33158178_33160116_33160270_33161629_33161827_33162584
ENSMUSG00000028282.13_32615451_32639528_1	chr4	+	651	7	ISM	ENSMUSG00000028282.13	ENSMUST00000178925.8	6557	11	-22	13737	0	27	5prime_fragment	FALSE	canonical	3	150	junction_1	38.5818034253916	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGGAAAATCGCATTCTG	2	True	NA	NA	False	NA	NA	NA	32615450	32639528	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_32615493_32624083_32624167_32630177_32630247_32631065_32631167_32631805_32631881_32634767_32634884_32639363
ENSMUSG00000028282.13_32615470_32624742_1	chr4	+	682	2	ISM	ENSMUSG00000028282.13	ENSMUST00000124278.8	300	5	19	7068	0	-7068	5prime_fragment	FALSE	canonical	3	150	junction_1	0	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCCTTCTCTCCCTC	21	False	NA	NA	False	NA	NA	NA	32615469	32624742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_32615493_32624083
ENSMUSG00000028282.13_32646184_32653265_1	chr4	+	1254	4	ISM	ENSMUSG00000028282.13	ENSMUST00000029950.10	6799	11	30706	0	22100	0	3prime_fragment	FALSE	canonical	3	269	junction_2	25.694789787469	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATTAGTATGCTTCTT	NA	False	NA	7	True	AATAAA	-20	NA	32646183	32653265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_32646661_32648026_32648127_32649172_32649258_32652673
ENSMUSG00000028292.15_34614969_34634100_1	chr4	+	860	6	ISM	ENSMUSG00000028292.15	ENSMUST00000029968.14	1868	20	12	26067	0	3530	5prime_fragment	FALSE	canonical	3	576	junction_1	75.0610418259699	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAATTTTAAAGACTAAAAA	0	True	NA	NA	False	AATAAA	-18	NA	34614968	34634100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657
ENSMUSG00000028292.15_34614978_34619744_1	chr4	+	1240	2	FSM	ENSMUSG00000028292.15	ENSMUST00000149620.2	434	2	17	-823	0	823	multi-exon	FALSE	canonical	3	576	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGGAAGAAGAAGAAGA	9	True	NA	NA	False	NA	NA	NA	34614977	34619744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_34615027_34618553
ENSMUSG00000028292.15_34614978_34660164_1	chr4	+	1788	19	NIC	ENSMUSG00000028292.15	novel	1868	20	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	2	8	junction_5	160.269410526829	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGTGTAGTAGTGTGT	9	True	NA	9	True	AATAGA	-24	NA	34614977	34660164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
ENSMUSG00000028292.15_34614978_34660164_2	chr4	+	1838	20	NNC	ENSMUSG00000028292.15	novel	1868	20	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	152.976054107151	1845	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGTGTAGTAGTGTGT	9	True	NA	9	True	AATAGA	-24	NA	34614977	34660164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_34615027_34618553_34618628_34623410_34623514_34625406_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
ENSMUSG00000028292.15_34614978_34660164_3	chr4	+	1947	21	NNC	ENSMUSG00000028292.15	novel	1868	20	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_9	178.38710715744	1757	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGTGTAGTAGTGTGT	9	True	NA	9	True	AATAGA	-24	NA	34614977	34660164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34640873_34640977_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
ENSMUSG00000028293.15_34663893_34687438_1	chr4	-	1403	8	FSM	ENSMUSG00000028293.15	ENSMUST00000029970.14	2039	8	0	636	0	0	multi-exon	FALSE	canonical	3	108	junction_4	17.6831523646385	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAGAGAGAGAGAGAGAGA	-21	True	NA	NA	False	AATGAA	-14	NA	34687438	34663892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34675029_34675183_34675471_34675632_34683284_34683463_34687243
ENSMUSG00000028295.15_34768786_34778365_1	chr4	-	661	3	FSM	ENSMUSG00000028295.15	ENSMUST00000108134.8	782	3	-1	122	-1	-111	multi-exon	FALSE	canonical	3	19	junction_2	76	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCATGGAGTTTCTAACG	-14	True	NA	NA	False	AATAAA	-20	NA	34778365	34768785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_34769148_34771257_34771415_34778223
ENSMUSG00000028295.15_34768786_34778365_2	chr4	-	606	3	FSM	ENSMUSG00000028295.15	ENSMUST00000029972.4	786	3	58	122	-1	-111	multi-exon	FALSE	canonical	3	160	junction_2	5.5	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCATGGAGTTTCTAACG	-14	True	NA	NA	False	AATAAA	-20	NA	34778365	34768785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_34769148_34771257_34771415_34778278
ENSMUSG00000028300.15_35191287_35197084_1	chr4	-	2062	4	ISM	ENSMUSG00000028300.15	ENSMUST00000108126.8	2644	10	28750	0	9046	0	3prime_fragment	FALSE	canonical	3	79	junction_3	11.0252236056942	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATGTTTTAGTTCATT	9767	False	NA	-5	True	AATAAA	-16	NA	35197084	35191286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_35193069_35193184_35193295_35194136_35194195_35196972
ENSMUSG00000028312.20_52439252_52451003_1	chr4	+	1034	8	ISM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	9	37257	0	-325	5prime_fragment	FALSE	canonical	3	347	junction_1	45.1758468969553	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGCTCTCAATTGTGAA	-10	True	NA	NA	False	AGTAAA	-36	NA	52439251	52451003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_52439411_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819
ENSMUSG00000028318.15_45018662_45032365_1	chr4	+	1580	12	FSM	ENSMUSG00000028318.15	ENSMUST00000133157.8	2986	12	79	1327	0	0	multi-exon	FALSE	canonical	3	141	junction_4	16.5753974809925	382	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCCTCCTTTCATGTTGC	14	True	NA	19	True	ATTAAA	-24	NA	45018661	45032365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_45018793_45019273_45019378_45022207_45022285_45023192_45023279_45025769_45025829_45026763_45026909_45027363_45027472_45028002_45028100_45029337_45029472_45030752_45030835_45031366_45031499_45031940
ENSMUSG00000028322.12_45316613_45320336_1	chr4	-	784	4	FSM	ENSMUSG00000028322.12	ENSMUST00000030003.10	1077	4	293	0	0	0	multi-exon	FALSE	canonical	3	481	junction_1	46.9065264352651	795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTGTAGTTCTACAGT	271	False	NA	-1	True	AATAAA	-17	NA	45320336	45316612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_45317029_45317677_45317830_45319549_45319700_45320270
ENSMUSG00000028322.12_45316613_45320604_1	chr4	-	797	4	NNC	ENSMUSG00000028322.12	novel	1077	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_3	209.085309542939	812	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTGTAGTTCTACAGT	3	True	NA	-1	True	AATAAA	-17	NA	45320604	45316612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_45317029_45317677_45317830_45319549_45319700_45320525
ENSMUSG00000028322.12_45316613_45320604_2	chr4	-	1048	4	NNC	ENSMUSG00000028322.12	novel	1077	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	273.650628843909	4800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTGTAGTTCTACAGT	3	True	NA	-1	True	AATAAA	-17	NA	45320604	45316612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_45317021_45317673_45317830_45319549_45319700_45320270
ENSMUSG00000028322.12_45316613_45320604_3	chr4	-	902	3	NIC	ENSMUSG00000028322.12	novel	1077	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	240.5	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTGTAGTTCTACAGT	3	True	NA	-1	True	AATAAA	-17	NA	45320604	45316612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_45317029_45317677_45317830_45320270
ENSMUSG00000028322.12_45316794_45320604_1	chr4	-	871	4	FSM	ENSMUSG00000028322.12	ENSMUST00000030003.10	1077	4	25	181	0	0	multi-exon	FALSE	canonical	3	481	junction_1	46.9065264352651	791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGAGTTTCCTGGGGAAA	3	True	NA	NA	False	TATAAA	-26	NA	45320604	45316793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_45317029_45317677_45317830_45319549_45319700_45320270
ENSMUSG00000028330.9_46138747_46172403_1	chr4	+	2876	23	FSM	ENSMUSG00000028330.9	ENSMUST00000030014.9	3010	23	134	0	134	0	multi-exon	FALSE	canonical	3	296	junction_19	36.3529529761015	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGGAGTCATGGTTTAT	-7	True	NA	21	True	AATAAA	-21	NA	46138746	46172403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_46138887_46144784_46144874_46145373_46145475_46147378_46147536_46149861_46149970_46150638_46150761_46152015_46152086_46152909_46153126_46155749_46155848_46156759_46156824_46157822_46157934_46159658_46159724_46161260_46161324_46162091_46162167_46162960_46163065_46165165_46165289_46166737_46166841_46167301_46167396_46168450_46168555_46169128_46169244_46169944_46170074_46170471_46170586_46171892
ENSMUSG00000028330.9_46169969_46172403_1	chr4	+	730	3	ISM	ENSMUSG00000028330.9	ENSMUST00000133286.2	781	8	4773	-424	4773	0	3prime_fragment	FALSE	canonical	3	392	junction_1	14	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGGAGTCATGGTTTAT	3896	False	NA	21	True	AATAAA	-21	NA	46169968	46172403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_46170074_46170471_46170586_46171892
ENSMUSG00000028333.11_46451278_46472521_1	chr4	+	1204	7	FSM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	376	136	376	-136	multi-exon	FALSE	canonical	3	5377	junction_1	313.520688666988	12097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTCTGTTTTCTCATGCT	126	False	NA	17	True	AATAAA	-13	NA	46451277	46472521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_46451350_46460089_46460240_46463806_46463930_46468558_46468788_46469882_46470008_46471397_46471468_46472086
ENSMUSG00000028333.11_46451278_46472657_1	chr4	+	1340	7	FSM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	376	0	376	0	multi-exon	FALSE	canonical	3	5377	junction_1	313.520688666988	14659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAGTTGTACTCTCACAT	126	False	NA	8	True	AATAAA	-20	NA	46451277	46472657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_46451350_46460089_46460240_46463806_46463930_46468558_46468788_46469882_46470008_46471397_46471468_46472086
ENSMUSG00000028333.11_46468771_46472521_1	chr4	+	641	4	NNC	ENSMUSG00000028333.11	novel	1716	7	NA	NA	17869	-136	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2731.78968606459	10556	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTCTGTTTTCTCATGCT	48	False	NA	17	True	AATAAA	-13	NA	46468770	46472521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_46468788_46469888_46470008_46471397_46471468_46472086
ENSMUSG00000028333.11_46469917_46472521_1	chr4	+	591	3	NNC	ENSMUSG00000028333.11	novel	1716	7	NA	NA	19015	-136	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2896.5	1079	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTCTGTTTTCTCATGCT	-12	True	NA	17	True	AATAAA	-13	NA	46469916	46472521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_46470008_46471397_46471468_46472091
ENSMUSG00000028333.11_46469917_46472657_1	chr4	+	727	3	NNC	ENSMUSG00000028333.11	novel	1716	7	NA	NA	19015	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2896.5	3440	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAGTTGTACTCTCACAT	-12	True	NA	8	True	AATAAA	-20	NA	46469916	46472657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_46470008_46471397_46471468_46472091
ENSMUSG00000028333.11_46471396_46472521_1	chr4	+	505	2	NNC	ENSMUSG00000028333.11	novel	1716	7	NA	NA	20494	-136	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	762	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTCTGTTTTCTCATGCT	-2	True	NA	17	True	AATAAA	-13	NA	46471395	46472521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_46471468_46472088
ENSMUSG00000028333.11_46471396_46472657_1	chr4	+	641	2	NNC	ENSMUSG00000028333.11	novel	1716	7	NA	NA	20494	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1657	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAGTTGTACTCTCACAT	-2	True	NA	8	True	AATAAA	-20	NA	46471395	46472657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_46471468_46472088
ENSMUSG00000028334.11_46489319_46502674_1	chr4	+	1150	6	FSM	ENSMUSG00000028334.11	ENSMUST00000030018.5	2179	6	71	958	0	-958	multi-exon	FALSE	canonical	3	811	junction_3	76.1377698648969	3068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCTGCTGCTGTCCAGT	3	True	NA	12	True	AATAAA	-25	NA	46489318	46502674	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_46489491_46492705_46492922_46499042_46499143_46500065_46500221_46500712_46500980_46502434
ENSMUSG00000028334.11_46489319_46502674_2	chr4	+	1009	6	NNC	ENSMUSG00000028334.11	novel	2179	6	NA	NA	0	-958	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	361.736146935857	338	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCTGCTGCTGTCCAGT	3	True	NA	12	True	AATAAA	-25	NA	46489318	46502674	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_46489491_46492705_46492922_46499042_46499143_46500065_46500221_46500712_46500914_46502509
ENSMUSG00000028343.11_48194364_48279572_1	chr4	-	1597	12	FSM	ENSMUSG00000028343.11	ENSMUST00000030028.5	2624	12	-14	1041	-14	126	multi-exon	FALSE	canonical	3	625	junction_9	43.7020339182862	1398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCCTGGACAGTCTTTA	6	True	NA	1	True	AATAAA	-27	NA	48279572	48194363	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48236872_48236989_48241295_48241336_48243476_48243550_48279383
ENSMUSG00000028343.11_48194490_48279572_1	chr4	-	1355	11	NIC	ENSMUSG00000028343.11	novel	2624	12	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_8	206.167019670945	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTTTTAATTTTTTTCC	6	True	NA	-28	True	AATAAA	-14	NA	48279572	48194489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48241295_48241336_48243476_48243550_48279383
ENSMUSG00000028343.11_48194490_48279572_2	chr4	-	1471	12	FSM	ENSMUSG00000028343.11	ENSMUST00000030028.5	2624	12	-14	1167	-14	0	multi-exon	FALSE	canonical	3	625	junction_9	43.7020339182862	1341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTTTTAATTTTTTTCC	6	True	NA	-28	True	AATAAA	-14	NA	48279572	48194489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48236872_48236989_48241295_48241336_48243476_48243550_48279383
ENSMUSG00000028343.11_48194490_48279572_3	chr4	-	1466	12	NNC	ENSMUSG00000028343.11	novel	2624	12	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	204.322990134543	1260	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTTTTAATTTTTTTCC	6	True	NA	-28	True	AATAAA	-14	NA	48279572	48194489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218192_48219342_48219528_48236872_48236989_48241295_48241336_48243476_48243550_48279383
ENSMUSG00000028344.13_48430858_48456879_1	chr4	+	1069	7	NIC	ENSMUSG00000028344.13	novel	5633	17	NA	NA	48670	24925	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAGAACTACCACAGCGC	NA	False	NA	NA	False	AATACA	-32	NA	48430857	48456879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733
ENSMUSG00000028345.16_48430858_48473459_1	chr4	-	2629	15	NIC	ENSMUSG00000028345.16	novel	3102	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_12	196.22390636355	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATGAGCTTCCTTCATA	NA	False	NA	-3	True	ATTAAA	-18	NA	48473459	48430857	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468753_48468994_48469883_48470073_48473265
ENSMUSG00000028347.15_48617292_48663131_1	chr4	+	1669	6	ISM	ENSMUSG00000028347.15	ENSMUST00000030032.13	2461	10	32118	0	-19642	0	3prime_fragment	FALSE	canonical	3	418	junction_3	53.8494196811813	218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTGCTTTGTGTGCTCA	1759	False	NA	NA	False	AATATA	-15	NA	48617291	48663131	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_48617332_48636839_48636989_48638979_48639046_48650294_48650419_48658773_48658933_48662000
ENSMUSG00000028367.6_57943757_57956291_1	chr4	-	547	5	FSM	ENSMUSG00000028367.6	ENSMUST00000030051.6	1051	5	120	384	120	-384	multi-exon	TRUE	canonical	3	4612	junction_4	90.890043459116	101501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCTGATGTGTTTTAATA	-1	True	NA	-3	True	AATAAA	-25	NA	57956291	57943756	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_57943968_57945146_57945213_57950838_57950899_57951796_57951902_57956186
ENSMUSG00000028367.6_57943837_57956411_1	chr4	-	587	5	FSM	ENSMUSG00000028367.6	ENSMUST00000030051.6	1051	5	0	464	0	-464	multi-exon	FALSE	canonical	3	4612	junction_4	90.890043459116	10405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGAAGTGTGGAGAGTCT	24	False	NA	-83	True	TTTAAA	-29	NA	57956411	57943836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_57943968_57945146_57945213_57950838_57950899_57951796_57951902_57956186
ENSMUSG00000028378.7_58966517_58987119_1	chr4	-	1218	10	FSM	ENSMUSG00000028378.7	ENSMUST00000030069.7	2296	10	0	1078	0	-1078	multi-exon	FALSE	canonical	3	293	junction_9	57.656068390259	2892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGTGATAGAGAATGAAAT	5	True	NA	-5	True	AATAAA	-24	NA	58987119	58966516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_58966764_58968758_58968878_58970990_58971100_58973534_58973691_58975860_58975979_58978013_58978182_58981826_58981884_58982879_58982926_58984743_58984860_58987037
ENSMUSG00000028378.7_58966517_58987119_2	chr4	-	1212	10	NNC	ENSMUSG00000028378.7	novel	2296	10	NA	NA	0	-1078	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	132.10499004603	2813	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGTGATAGAGAATGAAAT	5	True	NA	-5	True	AATAAA	-24	NA	58987119	58966516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_58966764_58968758_58968872_58970990_58971100_58973534_58973691_58975860_58975979_58978013_58978182_58981826_58981884_58982879_58982926_58984743_58984860_58987037
ENSMUSG00000028378.7_58966628_58987119_1	chr4	-	1107	10	FSM	ENSMUSG00000028378.7	ENSMUST00000030069.7	2296	10	0	1189	0	-1189	multi-exon	FALSE	canonical	3	293	junction_9	57.656068390259	1191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGAGGGTTAGCTTTTTA	5	True	NA	-116	True	AATAAA	-19	NA	58987119	58966627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_58966764_58968758_58968878_58970990_58971100_58973534_58973691_58975860_58975979_58978013_58978182_58981826_58981884_58982879_58982926_58984743_58984860_58987037
ENSMUSG00000028383.18_59581645_59618067_1	chr4	+	1907	11	FSM	ENSMUSG00000028383.18	ENSMUST00000030078.12	2611	11	82	622	0	-621	multi-exon	FALSE	canonical	3	72	junction_3	12.963024338479	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCTTATGTAAAATGAAGC	21	False	NA	8	True	AATAAA	-18	NA	59581644	59618067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_59581776_59592154_59592319_59593236_59593336_59594395_59594511_59596862_59596967_59597256_59597356_59601372_59601568_59606471_59606544_59610509_59610876_59612681_59612811_59617634
ENSMUSG00000028391.17_62370869_62371933_1	chr4	-	1042	2	NNC	ENSMUSG00000028391.17	novel	2549	11	NA	NA	5577	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAATAAATAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	62371933	62370868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_62371597_62371619
ENSMUSG00000028391.17_62371971_62389136_1	chr4	-	1459	11	FSM	ENSMUSG00000028391.17	ENSMUST00000120095.8	2549	11	-12	1102	-3	-100	multi-exon	FALSE	canonical	3	20	junction_10	54.6457683631587	667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGTGGCTTTGTGTT	NA	False	NA	-4	True	NA	NA	NA	62389136	62371970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62388948
ENSMUSG00000028391.17_62371971_62389136_2	chr4	-	1189	10	NIC	ENSMUSG00000028391.17	novel	1440	11	NA	NA	-3	-100	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	61.169063430689	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGTGGCTTTGTGTT	NA	False	NA	-4	True	NA	NA	NA	62389136	62371970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_62372175_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62389055
ENSMUSG00000028393.11_62427406_62438169_1	chr4	-	1211	12	NNC	ENSMUSG00000028393.11	novel	1206	12	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	192.524764962762	1490	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGTGCCCTCTTCCTGC	NA	False	NA	-1	True	AGTAAA	-18	NA	62438169	62427405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_62427548_62428341_62428463_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62438096
ENSMUSG00000028393.11_62427406_62438169_2	chr4	-	1215	12	NNC	ENSMUSG00000028393.11	novel	1206	12	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	192.799643358951	1491	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGTGCCCTCTTCCTGC	NA	False	NA	-1	True	AGTAAA	-18	NA	62438169	62427405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432315_62432498_62438096
ENSMUSG00000028394.10_62442035_62443281_1	chr4	-	632	4	FSM	ENSMUSG00000028394.10	ENSMUST00000030091.10	1805	4	24	1149	-6	537	multi-exon	FALSE	canonical	3	309	junction_3	9.56846672960488	3715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTCTTCCCAGGCTCAGA	NA	False	NA	-7	True	AATAAA	-23	NA	62443281	62442034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_62442348_62442554_62442674_62442986_62443073_62443167
ENSMUSG00000028398.9_75195719_75196542_1	chr4	-	613	2	FSM	ENSMUSG00000028398.9	ENSMUST00000030103.9	741	2	0	128	0	-128	multi-exon	FALSE	canonical	3	402	junction_1	0	1989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTTCTCTGTCTTGTCC	NA	False	NA	-4	True	AATAAA	-16	NA	75196542	75195718	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_75196007_75196217
ENSMUSG00000028405.10_40143429_40198338_1	chr4	+	3484	21	FSM	ENSMUSG00000028405.10	ENSMUST00000102973.4	3832	21	348	0	348	0	multi-exon	FALSE	canonical	3	234	junction_5	35.2306684580353	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGGCTTTGGAGTTGA	22	True	NA	9	True	ATTAAA	-17	NA	40143428	40198338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_40143542_40163718_40163846_40164608_40164778_40167053_40167192_40175664_40175735_40175841_40176026_40176495_40176636_40177778_40177951_40178972_40179074_40180171_40180289_40181382_40181543_40182803_40182940_40183567_40183653_40184900_40185058_40186315_40186441_40188165_40188271_40189343_40189487_40190736_40190885_40193738_40193862_40196244_40196431_40197553
ENSMUSG00000028407.5_40270665_40279409_1	chr4	+	573	4	NIC	ENSMUSG00000028407.5	novel	1044	2	NA	NA	881	8469	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	33340	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGCGGCGCGGAGTGAT	729	False	NA	NA	False	NA	NA	NA	40270664	40279409	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_40270848_40272809_40272855_40277652_40277746_40279157
ENSMUSG00000028407.5_40270665_40279409_2	chr4	+	560	4	NNC	ENSMUSG00000028407.5	novel	1044	2	NA	NA	881	8469	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	30007	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGCGGCGCGGAGTGAT	729	False	NA	NA	False	NA	NA	NA	40270664	40279409	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_40270848_40272809_40272855_40277652_40277746_40279170
ENSMUSG00000028409.12_40737117_40757840_1	chr4	-	1755	12	NNC	ENSMUSG00000028409.12	novel	2418	12	NA	NA	-9	-575	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	378.143310976624	6614	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAAGTGCTCATAAGGGG	16	True	NA	-14	True	AATAAA	-17	NA	40757840	40737116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754512_40754661_40755626_40755838_40757776
ENSMUSG00000028409.12_40737117_40757840_2	chr4	-	1760	12	FSM	ENSMUSG00000028409.12	ENSMUST00000030117.5	2418	12	83	575	-9	-575	multi-exon	FALSE	canonical	3	1190	junction_8	75.1643928360578	6650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAAGTGCTCATAAGGGG	16	True	NA	-14	True	AATAAA	-17	NA	40757840	40737116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626_40755838_40757776
ENSMUSG00000028409.12_40737117_40757840_3	chr4	-	1549	11	NIC	ENSMUSG00000028409.12	novel	2418	12	NA	NA	-9	-575	combination_of_known_splicesites	FALSE	canonical	3	21	junction_10	388.074168168921	1877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAAGTGCTCATAAGGGG	16	True	NA	-14	True	AATAAA	-17	NA	40757840	40737116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40757776
ENSMUSG00000028410.14_40722559_40733106_1	chr4	+	1439	9	FSM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	79	1858	0	-794	multi-exon	FALSE	canonical	3	1814	junction_2	361.659175709673	14056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGCCCTGTATGTAT	22	False	NA	12	True	AATAAA	-18	NA	40722558	40733106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ENSMUSG00000028410.14_40722559_40733325_1	chr4	+	1658	9	FSM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	79	1639	0	-575	multi-exon	FALSE	canonical	3	1814	junction_2	361.659175709673	14702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTAGTTACATGTCGGTC	22	False	NA	NA	False	ATTAAA	-32	NA	40722558	40733325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ENSMUSG00000028410.14_40722559_40733900_1	chr4	+	2233	9	FSM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	79	1064	0	0	multi-exon	FALSE	canonical	3	1814	junction_2	361.659175709673	15947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTGTGTCACTGCAGGC	22	False	NA	5	True	AATATA	-17	NA	40722558	40733900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ENSMUSG00000028410.14_40722930_40733106_1	chr4	+	1436	9	NIC	ENSMUSG00000028410.14	novel	5622	9	NA	NA	0	-794	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	944.437919809979	5665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGCCCTGTATGTAT	-27	True	NA	12	True	AATAAA	-18	NA	40722929	40733106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_40723002_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ENSMUSG00000028410.14_40722930_40733106_2	chr4	+	1571	9	FSM	ENSMUSG00000028410.14	ENSMUST00000164233.8	5622	9	8	4043	0	-794	multi-exon	FALSE	canonical	3	76	junction_1	940.162278213182	5861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGCCCTGTATGTAT	-27	True	NA	12	True	AATAAA	-18	NA	40722929	40733106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_40723137_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
ENSMUSG00000028415.5_40923384_40931395_1	chr4	+	361	4	NNC	ENSMUSG00000028415.5	novel	397	4	NA	NA	3330	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	2.05480466765633	70	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAAGTGGCCCAGTCTTTG	3328	False	NA	NA	False	AATAAA	-18	NA	40923383	40931395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_40923452_40924923_40924965_40929078_40929192_40931256
ENSMUSG00000028416.14_40936401_40941591_1	chr4	-	514	4	ISM	ENSMUSG00000028416.14	ENSMUST00000030125.5	1295	7	6652	0	6652	0	3prime_fragment	FALSE	canonical	3	1821	junction_3	195.380540370723	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTTGGCTCTGTGGTGG	6718	False	NA	-9	True	AAAAAG	-37	NA	40941591	40936400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_40936677_40937131_40937195_40939076_40939185_40941524
ENSMUSG00000028416.14_40936401_40948308_1	chr4	-	1134	8	NNC	ENSMUSG00000028416.14	novel	1295	7	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_7	718.854928454459	855	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTTGGCTCTGTGGTGG	1	True	NA	-9	True	AAAAAG	-37	NA	40948308	40936400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_40936677_40937131_40937195_40939076_40939185_40941524_40941639_40943624_40943708_40946168_40946298_40947721_40948046_40948271
ENSMUSG00000028416.14_40936401_40948308_2	chr4	-	1139	8	NNC	ENSMUSG00000028416.14	novel	1295	7	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	161	junction_7	669.499477983671	917	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTTGGCTCTGTGGTGG	1	True	NA	-9	True	AAAAAG	-37	NA	40948308	40936400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_40936677_40937131_40937195_40939076_40939185_40941524_40941639_40943624_40943708_40946168_40946298_40947721_40948051_40948271
ENSMUSG00000028419.6_40948578_40964959_1	chr4	+	1004	8	FSM	ENSMUSG00000028419.6	ENSMUST00000030128.6	1519	8	171	344	171	-344	multi-exon	FALSE	canonical	3	499	junction_1	44.0352363547231	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTATGGTAGTGTAAGTAC	15	True	NA	25	True	ATTAAA	-22	NA	40948577	40964959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_40948677_40949453_40949559_40950513_40950561_40952367_40952462_40952981_40953054_40958889_40958999_40960858_40960972_40964594
ENSMUSG00000028419.6_40948578_40965303_1	chr4	+	1348	8	FSM	ENSMUSG00000028419.6	ENSMUST00000030128.6	1519	8	171	0	171	0	multi-exon	FALSE	canonical	3	499	junction_1	44.0352363547231	815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAATTGTAGTATCGCTTT	15	True	NA	14	True	AATAAA	-16	NA	40948577	40965303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_40948677_40949453_40949559_40950513_40950561_40952367_40952462_40952981_40953054_40958889_40958999_40960858_40960972_40964594
ENSMUSG00000028420.14_53826045_53860592_1	chr4	+	1278	5	NIC	ENSMUSG00000028420.14	novel	2862	6	NA	NA	0	-1427	combination_of_known_splicesites	FALSE	canonical	3	25	junction_1	42.4345083628879	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTGTATACAGTTATTT	-16	True	NA	5	True	AATAAA	-14	NA	53826044	53860592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_53826221_53848865_53849051_53850473_53850562_53854311_53854430_53859881
ENSMUSG00000028420.14_53826045_53860592_2	chr4	+	1435	6	FSM	ENSMUSG00000028420.14	ENSMUST00000030127.13	2862	6	0	1427	0	-1427	multi-exon	FALSE	canonical	3	107	junction_3	9.52050418832952	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTGTATACAGTTATTT	-16	True	NA	5	True	AATAAA	-14	NA	53826044	53860592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_53826221_53840626_53840784_53848865_53849051_53850473_53850562_53854311_53854430_53859881
ENSMUSG00000028420.14_53826045_53860592_3	chr4	+	1093	4	NIC	ENSMUSG00000028420.14	novel	2862	6	NA	NA	0	-1427	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	56.8643610318058	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTGTATACAGTTATTT	-16	True	NA	5	True	AATAAA	-14	NA	53826044	53860592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_53826221_53850473_53850562_53854311_53854430_53859881
ENSMUSG00000028423.16_40970906_40985215_1	chr4	+	1467	3	ISM	ENSMUSG00000028423.16	ENSMUST00000091614.7	3617	16	0	27393	0	-26954	5prime_fragment	FALSE	canonical	3	562	junction_1	20.5	247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAAAGAAAATGT	6045	False	NA	NA	False	NA	NA	NA	40970905	40985215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_40971060_40976352_40977343_40984892
ENSMUSG00000028426.11_55385503_55390762_1	chr4	+	978	2	ISM	ENSMUSG00000028426.11	ENSMUST00000030134.9	3810	10	35460	1475	35413	-1475	3prime_fragment	FALSE	canonical	3	1164	junction_1	0	4481	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTGCATGTTTGCTTTTG	7170	False	NA	22	True	AGTAAA	-14	NA	55385502	55390762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_55385602_55389883
ENSMUSG00000028426.11_55385503_55391207_1	chr4	+	1423	2	ISM	ENSMUSG00000028426.11	ENSMUST00000030134.9	3810	10	35460	1030	35413	-1030	3prime_fragment	FALSE	canonical	3	1164	junction_1	0	6100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACAGTGTTGGCTTTTATT	7170	False	NA	32	True	ATTAAA	-14	NA	55385502	55391207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_55385602_55389883
ENSMUSG00000028430.15_41114427_41124277_1	chr4	-	4421	26	FSM	ENSMUSG00000028430.15	ENSMUST00000030138.9	4599	26	178	0	178	0	multi-exon	FALSE	canonical	3	287	junction_9	34.7585960591046	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACTTGTCTTTCCTCTT	27	False	41124289	-4	True	NA	NA	NA	41124277	41114426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
ENSMUSG00000028431.12_56781193_56802331_1	chr4	-	1665	14	ISM	ENSMUSG00000028431.12	ENSMUST00000030140.3	6160	37	0	31513	0	-4727	5prime_fragment	FALSE	canonical	3	245	junction_1	27.3257794921219	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAGAAGAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	56802331	56781192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_56781218_56784537_56784638_56786587_56786753_56787740_56787972_56790130_56790225_56790887_56791012_56792026_56792118_56792384_56792482_56794089_56794176_56795505_56795587_56796503_56796586_56798657_56798811_56799974_56800138_56802158
ENSMUSG00000028431.12_56789083_56802331_1	chr4	-	1497	11	NNC	ENSMUSG00000028431.12	novel	6160	37	NA	NA	0	-12617	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	95.5351244307558	58	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTCATCTCAGAATTGGA	NA	False	NA	NA	False	AATAAA	-15	NA	56802331	56789082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_56789436_56790130_56790225_56790887_56791012_56792026_56792118_56792384_56792482_56794089_56794176_56795505_56795587_56796503_56796586_56798657_56798811_56799974_56800138_56802158
ENSMUSG00000028435.9_41092722_41098183_1	chr4	-	1760	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	785.740007890651	1292	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	-4	True	AATAAA	-21	NA	41098183	41092721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095149_41095272_41098001
ENSMUSG00000028436.9_41292496_41298340_1	chr4	-	1116	4	ISM	ENSMUSG00000028436.9	ENSMUST00000030145.9	3442	9	16549	1196	16549	-1196	3prime_fragment	FALSE	canonical	3	440	junction_1	72.5273894623419	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTTTACTCAGAGTCCAG	NA	False	NA	-11	True	ATTAAA	-17	NA	41298340	41292495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285
ENSMUSG00000028436.9_41292496_41314889_1	chr4	-	2246	9	FSM	ENSMUSG00000028436.9	ENSMUST00000030145.9	3442	9	0	1196	0	-1196	multi-exon	FALSE	canonical	3	440	junction_1	50.3213113402264	744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTTTACTCAGAGTCCAG	1860	False	NA	-11	True	ATTAAA	-17	NA	41314889	41292495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
ENSMUSG00000028436.9_41293011_41298340_1	chr4	-	601	4	ISM	ENSMUSG00000028436.9	ENSMUST00000030145.9	3442	9	16549	1711	16549	-1711	3prime_fragment	FALSE	canonical	3	440	junction_1	72.5273894623419	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCAGTTTCCTTGTTTGA	NA	False	NA	-5	True	NA	NA	NA	41298340	41293010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285
ENSMUSG00000028436.9_41293011_41314889_1	chr4	-	1731	9	FSM	ENSMUSG00000028436.9	ENSMUST00000030145.9	3442	9	0	1711	0	-1711	multi-exon	FALSE	canonical	3	440	junction_1	50.3213113402264	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCAGTTTCCTTGTTTGA	1860	False	NA	-5	True	NA	NA	NA	41314889	41293010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
ENSMUSG00000028447.12_41714947_41723163_1	chr4	-	817	7	FSM	ENSMUSG00000028447.12	ENSMUST00000030158.11	973	7	7	149	0	-149	multi-exon	FALSE	canonical	3	869	junction_5	34.1829229619443	7827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCCTGTTGGCCTGCTGA	-9	True	NA	NA	False	AATAAA	-18	NA	41723163	41714946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_41715260_41715395_41715456_41716395_41716455_41717356_41717441_41719836_41719924_41720782_41720868_41723034
ENSMUSG00000028447.12_41714947_41723163_2	chr4	-	736	6	FSM	ENSMUSG00000028447.12	ENSMUST00000171641.2	885	6	0	149	0	-149	multi-exon	FALSE	canonical	3	44	junction_1	342.598657323697	1087	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCCTGTTGGCCTGCTGA	-9	True	NA	NA	False	AATAAA	-18	NA	41723163	41714946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_41715239_41716395_41716455_41717356_41717441_41719836_41719924_41720782_41720868_41723034
ENSMUSG00000028451.13_42979963_43000433_1	chr4	+	3242	17	Genic_Genomic	ENSMUSG00000028451.13	novel	1018	3	NA	NA	10017	16793	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12532	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAACCGAGAAAAGCCGAAT	10003	False	NA	NA	False	NA	NA	NA	42979962	43000433	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
ENSMUSG00000028451.13_42979963_43000434_1	chr4	+	3243	17	Genic_Genomic	ENSMUSG00000028451.13	novel	1018	3	NA	NA	10017	16794	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12607	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACCGAGAAAAGCCGAATC	10003	False	NA	NA	False	NA	NA	NA	42979962	43000434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
ENSMUSG00000028451.13_42980318_43000434_1	chr4	+	2888	17	Genic_Genomic	ENSMUSG00000028451.13	novel	1018	3	NA	NA	10372	16794	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7549	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACCGAGAAAAGCCGAATC	NA	False	NA	NA	False	NA	NA	NA	42980317	43000434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
ENSMUSG00000028452.8_42980318_43000434_1	chr4	-	2882	17	NNC	ENSMUSG00000028452.8	novel	3316	17	NA	NA	-1	-355	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	658.333333003692	6523	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGAAGAGTGAATTACCAG	1	True	NA	-4	True	AATAAA	-19	NA	43000434	42980317	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990872_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
ENSMUSG00000028452.8_42980318_43000434_4	chr4	-	2893	17	NNC	ENSMUSG00000028452.8	novel	3316	17	NA	NA	-1	-355	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	686.216731320178	6712	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGAAGAGTGAATTACCAG	1	True	NA	-4	True	AATAAA	-19	NA	43000434	42980317	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985148_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
ENSMUSG00000028452.8_42992531_43000434_1	chr4	-	1450	5	ISM	ENSMUSG00000028452.8	ENSMUST00000030164.8	3316	17	73	12568	-1	204	5prime_fragment	FALSE	canonical	3	2372	junction_4	121.526746027366	3164	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAGCACTGGCTGTTCT	1	True	NA	NA	False	NA	NA	NA	43000434	42992530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
ENSMUSG00000028455.16_43027690_43031402_1	chr4	-	1566	10	FSM	ENSMUSG00000028455.16	ENSMUST00000030169.15	1874	10	308	0	-32	0	multi-exon	FALSE	canonical	3	2352	junction_9	320.749854459519	8578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGAGAGATGGCTGTGGTG	0	True	NA	-4	True	AATAAA	-19	NA	43031402	43027689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
ENSMUSG00000028455.16_43028026_43031402_1	chr4	-	1450	9	ISM	ENSMUSG00000028455.16	ENSMUST00000030169.15	1874	10	308	336	-32	0	intron_retention	FALSE	canonical	3	2647	junction_5	244.637870126438	6518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAAACTGTCCTCATTGA	0	True	NA	-7	True	AATAAA	-16	NA	43031402	43028025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970
ENSMUSG00000028455.16_43028026_43031402_2	chr4	-	1232	10	NNC	ENSMUSG00000028455.16	novel	1874	10	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	968.408545558697	7722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAAACTGTCCTCATTGA	0	True	NA	-7	True	AATAAA	-16	NA	43031402	43028025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_43028294_43028937_43029054_43029263_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
ENSMUSG00000028455.16_43028026_43031402_3	chr4	-	1335	10	NNC	ENSMUSG00000028455.16	novel	1874	10	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_9	987.180659413963	7973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAAACTGTCCTCATTGA	0	True	NA	-7	True	AATAAA	-16	NA	43031402	43028025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031223
ENSMUSG00000028455.16_43028026_43031402_4	chr4	-	1128	9	NIC	ENSMUSG00000028455.16	novel	1874	10	NA	NA	-32	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_5	1042.82857531811	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAAACTGTCCTCATTGA	0	True	NA	-7	True	AATAAA	-16	NA	43031402	43028025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030239_43030299_43030435_43030536_43030970_43031109_43031328
ENSMUSG00000028455.16_43028026_43031402_5	chr4	-	1185	10	NNC	ENSMUSG00000028455.16	novel	1874	10	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_5	975.12693697276	1851	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAAACTGTCCTCATTGA	0	True	NA	-7	True	AATAAA	-16	NA	43031402	43028025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029860_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
ENSMUSG00000028455.16_43028229_43031402_1	chr4	-	1027	10	FSM	ENSMUSG00000028455.16	ENSMUST00000030169.15	1874	10	308	539	-32	0	multi-exon	FALSE	canonical	3	2352	junction_9	320.749854459519	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGAGATGTCCAGGCTA	0	True	NA	NA	False	GGGGCT	-45	NA	43031402	43028228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
ENSMUSG00000028461.13_43493377_43495921_1	chr4	+	794	6	NNC	ENSMUSG00000028461.13	novel	817	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_3	127.031334717069	1864	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTCCTCTGTGCTT	-11	True	NA	14	True	AGTAAA	-45	NA	43493376	43495921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_43493537_43493607_43493760_43495194_43495256_43495349_43495433_43495508_43495622_43495696
ENSMUSG00000028464.17_43514711_43523388_1	chr4	-	957	9	FSM	ENSMUSG00000028464.17	ENSMUST00000107914.10	1164	9	207	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	2.31503239718152	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGGCCCTTTAAGCCT	9976	False	NA	-14	True	AATAAA	-16	NA	43523388	43514710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_43514862_43518229_43518300_43518401_43518465_43519002_43519079_43519226_43519298_43519388_43519507_43519610_43519745_43522674_43522801_43523240
ENSMUSG00000028464.17_43514711_43523495_1	chr4	-	1064	9	FSM	ENSMUSG00000028464.17	ENSMUST00000107914.10	1164	9	100	0	-31	0	multi-exon	FALSE	canonical	3	13	junction_1	2.31503239718152	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGGCCCTTTAAGCCT	9869	False	NA	-14	True	AATAAA	-16	NA	43523495	43514710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_43514862_43518229_43518300_43518401_43518465_43519002_43519079_43519226_43519298_43519388_43519507_43519610_43519745_43522674_43522801_43523240
ENSMUSG00000028465.17_43559343_43562223_1	chr4	-	469	2	FSM	ENSMUSG00000028465.17	ENSMUST00000123985.2	937	2	468	0	-66	0	multi-exon	FALSE	canonical	3	68	junction_1	0	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCTTCATATTTTTAAAA	10	True	NA	-30	True	NA	NA	NA	43562223	43559342	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_43559718_43562129
ENSMUSG00000028465.17_43559343_43562422_1	chr4	-	668	2	FSM	ENSMUSG00000028465.17	ENSMUST00000123985.2	937	2	269	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCTTCATATTTTTAAAA	-9	True	NA	-30	True	NA	NA	NA	43562422	43559342	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_43559718_43562129
ENSMUSG00000028466.16_43562658_43566867_1	chr4	+	1365	9	FSM	ENSMUSG00000028466.16	ENSMUST00000102944.11	1884	9	326	193	-155	70	multi-exon	TRUE	canonical	3	77	junction_5	10.0615294563004	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTTTGCTCACGTGC	16	True	NA	14	True	AATAAA	-16	NA	43562657	43566867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_43562960_43563049_43563207_43563280_43563352_43563468_43563559_43565260_43565368_43565466_43565536_43566119_43566205_43566293_43566379_43566468
ENSMUSG00000028466.16_43562658_43567061_1	chr4	+	1559	9	FSM	ENSMUSG00000028466.16	ENSMUST00000102944.11	1884	9	326	-1	-155	1	multi-exon	FALSE	canonical	3	77	junction_5	10.0615294563004	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCTTTTTACTGGCACAG	16	True	NA	6	True	AATAAA	-15	NA	43562657	43567061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_43562960_43563049_43563207_43563280_43563352_43563468_43563559_43565260_43565368_43565466_43565536_43566119_43566205_43566293_43566379_43566468
ENSMUSG00000028466.16_43566928_43570700_1	chr4	+	2048	13	NIC	ENSMUSG00000028466.16	novel	1884	9	NA	NA	913	3640	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGTTCGGAGGGGTTGGA	4217	False	NA	NA	False	NA	NA	NA	43566927	43570700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_43567468_43567724_43567917_43567999_43568116_43568195_43568339_43568437_43568545_43568654_43568807_43568885_43568994_43569180_43569286_43569488_43569662_43569829_43569956_43570036_43570191_43570345_43570449_43570671
ENSMUSG00000028470.11_43654228_43656454_1	chr4	-	540	5	NNC	ENSMUSG00000028470.11	novel	610	5	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	311.572924850668	442	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTATCCCTGTCTTAA	0	True	NA	-6	True	AATAAA	-15	NA	43656454	43654227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_43654412_43654512_43654586_43654715_43654762_43654905_43655047_43656358
ENSMUSG00000028470.11_43654228_43656454_2	chr4	-	628	5	NIC	ENSMUSG00000028470.11	novel	610	5	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	306.825683409978	4475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTATCCCTGTCTTAA	0	True	NA	-6	True	AATAAA	-15	NA	43656454	43654227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_43654412_43654512_43654615_43654715_43654821_43654905_43655047_43656358
ENSMUSG00000028478.19_44012678_44032846_1	chr4	+	1031	4	NNC	ENSMUSG00000028478.19	novel	1099	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	640.788229882194	2278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	0	True	NA	21	True	AATAAA	-21	NA	44012677	44032846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_44013009_44019849_44019992_44025448_44025561_44032400
ENSMUSG00000028484.17_83373917_83381865_1	chr4	-	1989	7	ISM	ENSMUSG00000028484.17	ENSMUST00000030207.15	3251	16	22831	0	1336	0	3prime_fragment	FALSE	canonical	3	958	junction_5	83.2986594529988	2063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTATTAGTAAGTTATTAT	8136	False	NA	-4	True	ATTAAA	-16	NA	83381865	83373916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_83375317_83376311_83376424_83378080_83378295_83378390_83378493_83378695_83378767_83379422_83379479_83381831
ENSMUSG00000028484.17_83380108_83383201_1	chr4	-	762	3	ISM	ENSMUSG00000028484.17	ENSMUST00000107215.9	1898	11	21494	0	0	0	3prime_fragment	FALSE	canonical	3	354	junction_1	734	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATTTTTAGGTATTTTT	6800	False	NA	94	True	AATAAA	-19	NA	83383201	83380107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_83380711_83381831_83381951_83383161
ENSMUSG00000028494.13_86574943_86588231_1	chr4	-	1681	8	FSM	ENSMUSG00000028494.13	ENSMUST00000000466.13	1888	8	66	141	-8	-141	multi-exon	FALSE	canonical	3	453	junction_2	61.6944412539141	1882	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCTGCTCCTGTGTGGTC	NA	False	NA	-21	True	AATAAA	-15	NA	86588231	86574942	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_86575642_86576817_86576953_86578324_86578507_86580170_86580451_86582665_86582749_86586603_86586800_86586886_86586943_86588181
ENSMUSG00000028495.15_86772897_86775604_1	chr4	-	828	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9098.38236652538	209673	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	86775604	86772896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_86773193_86774103_86774246_86774382_86774594_86774964_86775097_86775557
ENSMUSG00000028495.15_86772897_86775604_10	chr4	-	820	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9226.88346626313	69689	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	86775604	86772896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_86773180_86774103_86774251_86774382_86774594_86774964_86775097_86775557
ENSMUSG00000028495.15_86772897_86775604_11	chr4	-	812	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9226.88346626313	25662	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	86775604	86772896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_86773172_86774103_86774251_86774382_86774594_86774964_86775097_86775557
ENSMUSG00000028495.15_86772897_86775604_2	chr4	-	839	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	8948.62646932478	172097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	86775604	86772896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775551
ENSMUSG00000028495.15_86772897_86775604_3	chr4	-	823	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9098.38236652538	48135	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	86775604	86772896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_86773193_86774103_86774251_86774392_86774594_86774964_86775097_86775557
ENSMUSG00000028495.15_86772897_86775604_4	chr4	-	833	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	8555.85572502833	84329	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	86775604	86772896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_86773193_86774103_86774246_86774382_86774594_86774959_86775097_86775557
ENSMUSG00000028495.15_86772897_86775604_5	chr4	-	1744	4	FSM	ENSMUSG00000028495.15	ENSMUST00000123229.8	639	4	-13	-1092	-13	0	multi-exon	FALSE	canonical	3	18159	junction_1	2678.8979077225	4474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	86775604	86772896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_86774251_86774382_86774594_86774964_86775097_86775557
ENSMUSG00000028495.15_86772897_86775604_6	chr4	-	825	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	3	114	junction_2	11009.376480982	71603	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	86775604	86772896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_86773188_86774103_86774248_86774382_86774594_86774964_86775097_86775557
ENSMUSG00000028495.15_86772897_86775604_7	chr4	-	828	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	8948.62646932478	184416	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	86775604	86772896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775562
ENSMUSG00000028495.15_86772897_86775604_8	chr4	-	821	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	8948.62646932478	45805	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	86775604	86772896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775569
ENSMUSG00000028495.15_86772897_86775604_9	chr4	-	800	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_4	8926.52702272838	15253	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	86775604	86772896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_86773193_86774103_86774251_86774382_86774594_86774964_86775064_86775557
ENSMUSG00000028495.15_86773041_86775604_1	chr4	-	684	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9098.38236652538	2618	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAAGGAAGCCAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	86775604	86773040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_86773193_86774103_86774246_86774382_86774594_86774964_86775097_86775557
ENSMUSG00000028496.18_87692153_87951601_1	chr4	-	2078	11	FSM	ENSMUSG00000028496.18	ENSMUST00000078090.12	6069	11	0	3991	0	0	multi-exon	TRUE	canonical	2	10	junction_9	3.7	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGGAAAAAAATAAAAA	NA	False	NA	NA	False	AAAACA	-18	NA	87951601	87692152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_87692384_87700523_87700596_87701885_87701958_87707523_87707624_87710089_87710220_87712172_87712249_87758918_87759627_87792074_87792219_87798302_87798386_87949760_87949942_87951320
ENSMUSG00000028517.9_105014544_105088345_1	chr4	+	1543	6	FSM	ENSMUSG00000028517.9	ENSMUST00000064139.8	3159	6	0	1616	0	-1616	multi-exon	FALSE	canonical	3	181	junction_2	17.8616908494129	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCCTTATCTTG	NA	False	NA	NA	False	AAAACA	-12	NA	105014543	105088345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_105015161_105051999_105052158_105065720_105066002_105066396_105066455_105076524_105076702_105088093
ENSMUSG00000028522.17_102976587_103000403_1	chr4	+	721	7	FSM	ENSMUSG00000028522.17	ENSMUST00000124348.2	1918	7	-20	1217	0	13	multi-exon	FALSE	canonical	3	89	junction_1	20.8619803044251	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGAGTTAAATTAAATTAAG	447	False	NA	NA	False	AAAAAG	-1	NA	102976586	103000403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_102976707_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330
ENSMUSG00000028527.19_101276516_101279747_1	chr4	+	841	3	NNC	ENSMUSG00000028527.19	novel	4360	6	NA	NA	0	-38031	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	4.5	79	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCTGAAATGTTTCTATT	NA	False	NA	NA	False	NA	NA	NA	101276515	101279747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_101276754_101276925_101277163_101279381
ENSMUSG00000028527.19_101276930_101321742_1	chr4	+	1638	5	ISM	ENSMUSG00000028527.19	ENSMUST00000106945.8	4175	6	414	2450	0	766	3prime_fragment	FALSE	canonical	3	206	junction_2	35.8355619462009	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGTCAGTGTTTTTCTTC	NA	False	NA	6	True	AAGAAA	-33	NA	101276929	101321742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749
ENSMUSG00000028540.7_117746104_117749220_1	chr4	-	2282	6	FSM	ENSMUSG00000028540.7	ENSMUST00000030265.4	2555	6	9	264	0	0	multi-exon	FALSE	canonical	3	66	junction_1	6.70522184569608	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTTCTCTTTATTCAC	NA	False	NA	-7	True	AATAAA	-15	NA	117749220	117746103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_117746874_117746951_117747129_117747214_117747899_117748091_117748316_117748511_117748625_117748906
ENSMUSG00000028546.18_110063324_110209120_1	chr4	-	1385	6	FSM	ENSMUSG00000028546.18	ENSMUST00000106603.9	3761	6	-14	2390	-14	232	multi-exon	FALSE	canonical	3	15	junction_1	6.48074069840786	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAACAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	110209120	110063323	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_110063857_110068622_110068849_110070324_110070479_110083741_110083846_110108477_110108719_110208993
ENSMUSG00000028546.18_110063324_110209120_2	chr4	-	1424	7	NIC	ENSMUSG00000028546.18	novel	3997	7	NA	NA	-14	232	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	10.286182749473	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAACAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	110209120	110063323	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_110063857_110066936_110066976_110068622_110068849_110070324_110070479_110083741_110083846_110108477_110108719_110208993
ENSMUSG00000028549.18_99655568_99717379_1	chr4	-	833	9	FSM	ENSMUSG00000028549.18	ENSMUST00000146258.2	2806	9	44	1929	-8	0	multi-exon	FALSE	canonical	3	74	junction_5	47.6377935572167	1393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGTATGGAGCTCAGAG	NA	False	NA	58	True	NA	NA	NA	99717379	99655567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99686932_99687000_99690333_99690470_99702294_99702338_99717319
ENSMUSG00000028549.18_99655568_99717379_2	chr4	-	697	8	NIC	ENSMUSG00000028549.18	novel	2806	9	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_6	80.1386553520375	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGTATGGAGCTCAGAG	NA	False	NA	58	True	NA	NA	NA	99717379	99655567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99686932_99687000_99702294_99702338_99717319
ENSMUSG00000028549.18_99655568_99717379_3	chr4	-	785	8	NIC	ENSMUSG00000028549.18	novel	2806	9	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	1	6	junction_1	76.9311910948044	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGTATGGAGCTCAGAG	NA	False	NA	58	True	NA	NA	NA	99717379	99655567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_99655814_99668998_99669059_99670113_99670208_99677837_99677917_99686932_99687000_99690333_99690470_99702294_99702338_99717319
ENSMUSG00000028558.15_109075534_109103604_1	chr4	+	1167	7	NNC	ENSMUSG00000028558.15	novel	1606	8	NA	NA	-16148	-7416	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	5.40575824674229	41	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTCCTCTTTTAAGTGGA	NA	False	NA	NA	False	AATAAA	-24	NA	109075533	109103604	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_109075716_109092970_109093073_109095974_109096179_109099353_109099449_109101248_109101459_109101885_109102000_109103344
ENSMUSG00000028558.15_109075534_109111544_1	chr4	+	1742	9	NNC	ENSMUSG00000028558.15	novel	1606	8	NA	NA	-16148	2	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	5.12195031213697	142	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGGTTTTTCTTTTGTTT	NA	False	NA	NA	False	TATAAA	-19	NA	109075533	109111544	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_109075716_109092970_109093073_109095974_109096179_109099353_109099449_109101248_109101459_109101885_109102000_109103344_109103489_109108523_109108617_109110946
ENSMUSG00000028559.18_108857852_108918358_1	chr4	-	3695	31	NIC	ENSMUSG00000028559.18	novel	3134	21	NA	NA	4829	60490	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGACTTTCTTCATCCCACC	NA	False	NA	NA	False	NA	NA	NA	108918358	108857851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_108858362_108870706_108871038_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
ENSMUSG00000028559.18_108918852_108921790_1	chr4	-	937	4	ISM	ENSMUSG00000028559.18	ENSMUST00000160271.8	2604	20	53443	5	1397	0	3prime_fragment	FALSE	canonical	3	323	junction_3	9.28559218478941	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTTCTTTCATT	NA	False	NA	-6	True	CATAAA	-20	NA	108921790	108918851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759
ENSMUSG00000028559.18_108919284_108921790_1	chr4	-	505	4	ISM	ENSMUSG00000028559.18	ENSMUST00000160271.8	2604	20	53443	437	1397	0	3prime_fragment	FALSE	canonical	3	323	junction_3	9.28559218478941	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTCTGTGGCAGTTACAA	NA	False	NA	-6	True	ATTAAA	-21	NA	108921790	108919283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759
ENSMUSG00000028559.18_108959733_109059433_1	chr4	-	396	5	ISM	ENSMUSG00000028559.18	ENSMUST00000162787.9	2408	23	36	40457	0	-15089	5prime_fragment	FALSE	canonical	3	69	junction_1	13.2098448136229	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGACGCGTACCTGCAGAT	NA	False	NA	NA	False	AAGAAA	-10	NA	109059433	108959732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
ENSMUSG00000028563.17_98243607_98271491_2	chr4	-	976	7	NNC	ENSMUSG00000028563.17	novel	1027	7	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	212.976328888134	2740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTGACCTGTTATTAA	NA	False	NA	-4	True	AATAAA	-18	NA	98271491	98243606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_98243918_98246154_98246285_98253799_98253874_98258728_98258821_98263156_98263266_98268854_98268915_98271291
ENSMUSG00000028568.17_108673644_108690770_1	chr4	-	941	6	NNC	ENSMUSG00000028568.17	novel	3141	6	NA	NA	-9	271	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	435.029838057115	4745	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTACTTTTTTTTTCCT	NA	False	NA	NA	False	AATAAA	-14	NA	108690770	108673643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683404_108687714_108687781_108690704
ENSMUSG00000028568.17_108673644_108690770_2	chr4	-	971	7	NNC	ENSMUSG00000028568.17	novel	624	7	NA	NA	-9	271	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_6	515.895149769365	5364	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTACTTTTTTTTTCCT	NA	False	NA	NA	False	AATAAA	-14	NA	108690770	108673643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108688902_108688926_108690704
ENSMUSG00000028568.17_108673644_108690822_1	chr4	-	1000	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102742.11	3141	6	-11	2152	-11	271	multi-exon	FALSE	canonical	3	1008	junction_1	73.428604780426	6676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTACTTTTTTTTTCCT	NA	False	NA	NA	False	AATAAA	-14	NA	108690822	108673643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690704
ENSMUSG00000028568.17_108673796_108690770_1	chr4	-	796	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102742.11	3141	6	41	2304	-9	119	multi-exon	FALSE	canonical	3	1008	junction_1	73.428604780426	2384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGGGTGGTTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	108690770	108673795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690704
ENSMUSG00000028568.17_108673915_108690770_1	chr4	-	670	6	NNC	ENSMUSG00000028568.17	novel	3141	6	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	435.029838057115	263	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGATGCTGTCTGCTCAG	NA	False	NA	NA	False	TATAAA	-13	NA	108690770	108673914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683404_108687714_108687781_108690704
ENSMUSG00000028568.17_108673915_108690770_2	chr4	-	677	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102742.11	3141	6	41	2423	-9	0	multi-exon	FALSE	canonical	3	1008	junction_1	73.428604780426	1640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGATGCTGTCTGCTCAG	NA	False	NA	NA	False	TATAAA	-13	NA	108690770	108673914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690704
ENSMUSG00000028577.14_94457404_94491372_1	chr4	-	2675	14	FSM	ENSMUSG00000028577.14	ENSMUST00000107107.9	2784	14	109	0	0	0	multi-exon	TRUE	canonical	3	626	junction_12	53.7532164993284	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTGAGGTTTTCCTGTG	NA	False	NA	-12	True	AATAAA	-15	NA	94491372	94457403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_94458147_94459923_94460089_94462218_94462321_94463402_94463472_94466623_94466693_94470717_94470938_94471650_94471809_94472069_94472240_94474531_94474668_94474989_94475158_94475517_94475639_94475723_94475825_94478117_94478312_94491113
ENSMUSG00000028580.16_130390677_130455344_1	chr4	+	869	6	ISM	ENSMUSG00000028580.16	ENSMUST00000097864.9	4017	22	-20	52233	0	9152	5prime_fragment	FALSE	canonical	3	435	junction_5	80.7727676881262	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGTGAAAAGAAGAACAAGGG	NA	False	NA	14	True	TTTAAA	-40	NA	130390676	130455344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308
ENSMUSG00000028581.18_130640625_130663452_1	chr4	+	2411	8	FSM	ENSMUSG00000028581.18	ENSMUST00000151698.8	2600	8	189	0	0	0	multi-exon	FALSE	canonical	3	425	junction_4	26.2071808199702	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCATGTGGTTCTTG	NA	False	NA	22	True	AATAAA	-18	NA	130640624	130663452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771
ENSMUSG00000028583.15_142994742_143026042_1	chr4	-	984	6	FSM	ENSMUSG00000028583.15	ENSMUST00000030317.14	1817	6	92	741	-9	174	multi-exon	FALSE	canonical	3	463	junction_2	58.6153563496802	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCAAAAGACAACATGCTTA	NA	False	NA	NA	False	CATAAA	-16	NA	143026042	142994741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_142994997_142995757_142995870_142997092_142997132_143000469_143000627_143002640_143002778_143025758
ENSMUSG00000028587.19_108436651_108450256_1	chr4	+	526	4	NNC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	0	-2380	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_3	245.112672504345	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTGTGGAGTCATTTTG	5272	False	NA	NA	False	NA	NA	NA	108436650	108450256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_108436773_108445872_108445979_108447849_108447975_108450083
ENSMUSG00000028587.19_108436651_108471771_1	chr4	+	2755	17	FSM	ENSMUSG00000028587.19	ENSMUST00000102744.4	3014	17	0	259	0	-259	multi-exon	FALSE	canonical	3	458	junction_7	60.5103296966724	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTATTTTCCATTATTT	5272	False	NA	28	True	TATAAA	-1	NA	108436650	108471771	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
ENSMUSG00000028587.19_108436651_108471880_1	chr4	+	2864	17	FSM	ENSMUSG00000028587.19	ENSMUST00000102744.4	3014	17	0	150	0	-150	multi-exon	FALSE	canonical	3	458	junction_7	60.5103296966724	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTCTGGGAGAATTTGTA	5272	False	NA	8	True	NA	NA	NA	108436650	108471880	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
ENSMUSG00000028597.12_108257587_108263921_1	chr4	-	1041	3	NNC	ENSMUSG00000028597.12	novel	1289	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	79.5	1251	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCAAATGTGTTTGCCATT	NA	False	NA	-11	True	AATAAA	-40	NA	108263921	108257586	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_108258195_108260408_108260660_108263739
ENSMUSG00000028601.19_108022685_108036505_1	chr4	+	1534	10	FSM	ENSMUSG00000028601.19	ENSMUST00000130942.8	1319	10	22	-237	0	0	multi-exon	FALSE	canonical	3	90	junction_3	222.335582197522	3439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGCTGGAATTGTTGG	NA	False	NA	24	True	AATAAA	-17	NA	108022684	108036505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_108022859_108026911_108026980_108027057_108027424_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
ENSMUSG00000028603.16_107901575_107928560_1	chr4	-	883	5	NNC	ENSMUSG00000028603.16	novel	772	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	282.767130338729	1068	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGGGGGACTAGAGAAGA	NA	False	NA	NA	False	NA	NA	NA	107928560	107901574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_107902043_107904786_107904862_107912635_107912766_107921082_107921186_107928453
ENSMUSG00000028603.16_107901575_107975674_1	chr4	-	2046	16	FSM	ENSMUSG00000028603.16	ENSMUST00000030340.15	2640	16	55	539	-1	0	multi-exon	FALSE	canonical	3	305	junction_7	132.795314509043	1380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGGGGGACTAGAGAAGA	NA	False	NA	NA	False	NA	NA	NA	107975674	107901574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_107902043_107904786_107904867_107912635_107912766_107921082_107921186_107928453_107928608_107931552_107931661_107942351_107942500_107944208_107944360_107948433_107948521_107950020_107950085_107955218_107955346_107959487_107959553_107962240_107962373_107964813_107964886_107969423_107969482_107975575
ENSMUSG00000028607.17_107761180_107780644_1	chr4	-	2207	5	FSM	ENSMUSG00000028607.17	ENSMUST00000030345.15	2372	5	163	2	0	0	multi-exon	FALSE	canonical	3	130	junction_2	11.5866302262565	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCTGGTTCCTTTTTCCT	NA	False	NA	-2	True	AATAAA	-16	NA	107780644	107761179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_107761761_107764117_107765423_107769837_107769945_107771460_107771542_107780511
ENSMUSG00000028608.16_107747066_107754315_1	chr4	+	792	8	NIC	ENSMUSG00000028608.16	novel	2997	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	253.100609180118	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTGAAGGTGGTCT	NA	False	NA	14	True	AATAAA	-19	NA	107747065	107754315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_107747211_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
ENSMUSG00000028608.16_107747066_107754315_2	chr4	+	897	7	FSM	ENSMUSG00000028608.16	ENSMUST00000125107.8	1551	7	-30	684	0	0	multi-exon	FALSE	canonical	3	677	junction_4	47.0558179187229	625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTGAAGGTGGTCT	NA	False	NA	14	True	AATAAA	-19	NA	107747065	107754315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
ENSMUSG00000028608.16_107747066_107754315_3	chr4	+	668	8	NNC	ENSMUSG00000028608.16	novel	2997	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	261.94967580255	1063	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTGAAGGTGGTCT	NA	False	NA	14	True	AATAAA	-19	NA	107747065	107754315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750537_107750609_107752069_107752136_107754067
ENSMUSG00000028608.16_107747066_107754459_1	chr4	+	819	8	FSM	ENSMUSG00000028608.16	ENSMUST00000135454.8	2997	8	56	2122	0	0	multi-exon	FALSE	canonical	3	475	junction_1	98.5130261769001	2990	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGGTCAGCCTCCAGGA	NA	False	NA	NA	False	TATAAA	-27	NA	107747065	107754459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
ENSMUSG00000028608.16_107747066_107754999_1	chr4	+	1359	8	FSM	ENSMUSG00000028608.16	ENSMUST00000135454.8	2997	8	56	1582	0	0	multi-exon	FALSE	canonical	3	475	junction_1	98.5130261769001	3205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGTGTGTATTTATGT	NA	False	NA	23	True	NA	NA	NA	107747065	107754999	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
ENSMUSG00000028617.11_107090714_107093042_1	chr4	-	509	2	NNC	ENSMUSG00000028617.11	novel	1195	6	NA	NA	135	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	809	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTGCTTTTGAATTGC	NA	False	NA	-8	True	AATAAA	-17	NA	107093042	107090713	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_107091177_107092996
ENSMUSG00000028617.11_107090714_107110730_1	chr4	-	1748	8	NNC	ENSMUSG00000028617.11	novel	1755	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	72.7220035196939	2336	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTGCTTTTGAATTGC	NA	False	NA	-8	True	AATAAA	-17	NA	107110730	107090713	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_107091177_107092996_107093082_107096274_107096389_107096908_107096998_107098098_107098218_107100404_107100537_107104490_107104978_107110471
ENSMUSG00000028618.12_107035923_107057895_1	chr4	+	1150	8	FSM	ENSMUSG00000028618.12	ENSMUST00000030361.11	1775	8	327	298	0	0	multi-exon	FALSE	canonical	3	1513	junction_5	112.332959889567	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGGGTTGTATTTTTAT	NA	False	NA	63	True	NA	NA	NA	107035922	107057895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_107036115_107042974_107043081_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
ENSMUSG00000028618.12_107035923_107058193_1	chr4	+	1448	8	FSM	ENSMUSG00000028618.12	ENSMUST00000030361.11	1775	8	327	0	0	0	multi-exon	FALSE	canonical	3	1513	junction_5	112.332959889567	4191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGAGTGTTGGGCTTTCT	NA	False	NA	15	True	ATTAAA	-27	NA	107035922	107058193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_107036115_107042974_107043081_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
ENSMUSG00000028619.16_106996015_107035405_1	chr4	-	1727	5	NIC	ENSMUSG00000028619.16	novel	6431	5	NA	NA	0	452	combination_of_known_junctions	FALSE	canonical	3	8	junction_4	27.444261695298	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAGGCATAGTTTCCCCC	NA	False	NA	NA	False	AATAAA	-17	NA	107035405	106996014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_106996997_107004711_107004906_107022744_107022887_107034761_107034902_107035136
ENSMUSG00000028619.16_106996015_107035563_1	chr4	-	1587	5	FSM	ENSMUSG00000028619.16	ENSMUST00000057043.10	6431	5	181	4663	0	452	multi-exon	FALSE	canonical	3	63	junction_1	11	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAGGCATAGTTTCCCCC	NA	False	NA	NA	False	AATAAA	-17	NA	107035563	106996014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_106996997_107004711_107004906_107022744_107022887_107034761_107034902_107035434
ENSMUSG00000028619.16_106996015_107035744_1	chr4	-	1768	5	FSM	ENSMUSG00000028619.16	ENSMUST00000057043.10	6431	5	0	4663	0	452	multi-exon	FALSE	canonical	3	63	junction_1	11	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAGGCATAGTTTCCCCC	NA	False	NA	NA	False	AATAAA	-17	NA	107035744	106996014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_106996997_107004711_107004906_107022744_107022887_107034761_107034902_107035434
ENSMUSG00000028619.16_107021999_107035498_1	chr4	-	1092	3	ISM	ENSMUSG00000028619.16	ENSMUST00000129220.8	389	4	-18	25477	-18	856	5prime_fragment	FALSE	canonical	3	71	junction_1	11	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTTCATAGAGGAGGTGG	NA	False	NA	NA	False	NA	NA	NA	107035498	107021998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_107022887_107034761_107034902_107035434
ENSMUSG00000028619.16_107035864_107058193_1	chr4	-	1498	8	NNC	ENSMUSG00000028619.16	novel	935	5	NA	NA	-21880	-2051	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4114	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGGGCCAGCCCCTTTCC	8658	False	NA	NA	False	NA	NA	NA	107058193	107035863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_107036115_107042974_107043072_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
ENSMUSG00000028619.16_107035923_107058193_1	chr4	-	1442	8	NNC	ENSMUSG00000028619.16	novel	935	5	NA	NA	-21880	-2110	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3689	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCCCTCTGTCACAGCAG	8658	False	NA	NA	False	NA	NA	NA	107058193	107035922	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_107036115_107042974_107043081_107044815_107044911_107047731_107047885_107049664_107049741_107050495_107050578_107054702_107054812_107057564
ENSMUSG00000028619.16_107036215_107058193_1	chr4	-	1334	8	NIC	ENSMUSG00000028619.16	novel	935	5	NA	NA	-21880	-2402	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTCACCACTAGGGCCCC	8658	False	NA	NA	False	NA	NA	NA	107058193	107036214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_107036293_107042974_107043081_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
ENSMUSG00000028622.12_106913082_106924065_1	chr4	-	1484	7	NNC	ENSMUSG00000028622.12	novel	1498	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	224.430142558634	2190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTGGTGTGAGATTGTCT	NA	False	NA	-19	True	AATAAA	-12	NA	106924065	106913081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_106913302_106914568_106914773_106917679_106917838_106919079_106919266_106921581_106921698_106921783_106921960_106923641
ENSMUSG00000028634.18_119671692_119730534_1	chr4	+	1219	3	FSM	ENSMUSG00000028634.18	ENSMUST00000136547.2	1359	3	140	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGCATTATTATTACCA	NA	False	NA	NA	False	ATTAAA	-32	NA	119671691	119730534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_119671988_119729233_119729470_119729847
ENSMUSG00000028639.15_119135178_119138841_1	chr4	-	728	3	ISM	ENSMUSG00000028639.15	ENSMUST00000079644.13	1628	8	12960	0	542	0	3prime_fragment	FALSE	canonical	3	9851	junction_2	546	15615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	AATAAA	-16	NA	119138841	119135177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_119135565_119136130_119136397_119138766
ENSMUSG00000028639.15_119135178_119139535_1	chr4	-	929	4	ISM	ENSMUSG00000028639.15	ENSMUST00000079644.13	1628	8	12266	0	-152	0	3prime_fragment	FALSE	canonical	3	9851	junction_2	447.097304845377	17374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	AATAAA	-16	NA	119139535	119135177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342
ENSMUSG00000028645.12_118966001_118994527_1	chr4	+	2514	10	FSM	ENSMUSG00000028645.12	ENSMUST00000030398.10	3260	10	93	653	0	0	multi-exon	TRUE	canonical	3	565	junction_3	58.8236535946402	846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTCAAATGCTTGTG	669	False	NA	36	True	TATAAA	-18	NA	118966000	118994527	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118989881_118990293_118990457_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
ENSMUSG00000028645.12_118966111_118994527_1	chr4	+	2404	10	FSM	ENSMUSG00000028645.12	ENSMUST00000030398.10	3260	10	203	653	0	0	multi-exon	FALSE	canonical	3	565	junction_3	58.8236535946402	818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTCAAATGCTTGTG	779	False	NA	36	True	TATAAA	-18	NA	118966110	118994527	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118989881_118990293_118990457_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
ENSMUSG00000028647.14_123798834_123805105_1	chr4	+	519	5	FSM	ENSMUSG00000028647.14	ENSMUST00000030400.14	1685	5	209	957	0	70	multi-exon	FALSE	canonical	3	284	junction_4	22.6163657557973	1595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTTTGGGTCTTAAAGC	NA	False	NA	6	True	AATAAA	-13	NA	123798833	123805105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_123798881_123799026_123799100_123803426_123803476_123803629_123803760_123804885
ENSMUSG00000028647.14_123798834_123806062_1	chr4	+	1476	5	FSM	ENSMUSG00000028647.14	ENSMUST00000030400.14	1685	5	209	0	0	0	multi-exon	FALSE	canonical	3	284	junction_4	22.6163657557973	1949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTTCTTTCTTTTTGGT	NA	False	NA	40	True	NA	NA	NA	123798833	123806062	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_123798881_123799026_123799100_123803426_123803476_123803629_123803760_123804885
ENSMUSG00000028648.14_123606503_123611974_1	chr4	-	481	3	NNC	ENSMUSG00000028648.14	novel	525	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	1049	9401	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGCTTTTGGGTCA	1853	False	NA	-25	True	AATAAA	-17	NA	123611974	123606502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_123606720_123609656_123609852_123611905
ENSMUSG00000028648.14_123606503_123611974_2	chr4	-	494	3	NNC	ENSMUSG00000028648.14	novel	525	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	659	18969	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGCTTTTGGGTCA	1853	False	NA	-25	True	AATAAA	-17	NA	123611974	123606502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_123606720_123609666_123609875_123611905
ENSMUSG00000028648.14_123606503_123611974_3	chr4	-	581	3	NNC	ENSMUSG00000028648.14	novel	599	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	1048	25503	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGCTTTTGGGTCA	1853	False	NA	-25	True	AATAAA	-17	NA	123611974	123606502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_123606720_123609656_123609875_123611828
ENSMUSG00000028651.13_123020908_123033744_1	chr4	-	1180	10	NNC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	100	junction_9	309.335169215497	2151	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGCCTCCTGCAAGTTG	NA	False	NA	-14	True	AATAAA	-25	NA	123033744	123020907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030664_123030692_123031318_123031363_123032658_123032758_123033702
ENSMUSG00000028651.13_123020908_123033744_2	chr4	-	1188	10	NNC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	340.81833255045	1738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGCCTCCTGCAAGTTG	NA	False	NA	-14	True	AATAAA	-25	NA	123033744	123020907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027145_123028841_123028949_123029388_123029471_123030664_123030692_123031318_123031363_123032658_123032758_123033694
ENSMUSG00000028653.17_122910390_122948742_1	chr4	+	1851	9	NIC	ENSMUSG00000028653.17	novel	1964	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_6	40.8893323496484	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGCTGCATTGTCAAT	NA	False	NA	26	True	AATAAA	-30	NA	122910389	122948742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122940667_122940811_122942561_122942674_122943269_122943348_122946276_122946395_122947915
ENSMUSG00000028656.15_122752840_122779657_1	chr4	-	2557	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106255.8	2737	13	180	0	0	0	multi-exon	FALSE	canonical	3	275	junction_12	193.312139642945	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTGATGTTTTCAGTA	NA	False	NA	-7	True	AATAAA	-25	NA	122779657	122752839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779625
ENSMUSG00000028657.15_122730047_122751825_1	chr4	+	1323	9	FSM	ENSMUSG00000028657.15	ENSMUST00000030412.11	2381	9	12	1046	0	-1046	multi-exon	FALSE	canonical	3	268	junction_2	20.6579282601136	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATTTCTCTGCACTGCTG	NA	False	NA	NA	False	AATAAA	-27	NA	122730046	122751825	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225_122742329_122747383_122747475_122748172_122748272_122749598_122749671_122751302
ENSMUSG00000028657.15_122730047_122752213_1	chr4	+	1711	9	FSM	ENSMUSG00000028657.15	ENSMUST00000030412.11	2381	9	12	658	0	-658	multi-exon	FALSE	canonical	3	268	junction_2	20.6579282601136	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTACAGCAATGTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	122730046	122752213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225_122742329_122747383_122747475_122748172_122748272_122749598_122749671_122751302
ENSMUSG00000028657.15_122730047_122752871_1	chr4	+	2366	9	NNC	ENSMUSG00000028657.15	novel	2381	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	100.94173752715	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTCTGTATAATTTTAAG	NA	False	NA	103	True	ACTAAA	-25	NA	122730046	122752871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_122730177_122737794_122737898_122738210_122738339_122739763_122739835_122742225_122742329_122747383_122747475_122748172_122748272_122749598_122749671_122751302
ENSMUSG00000028657.15_122730047_122752871_2	chr4	+	1309	10	NNC	ENSMUSG00000028657.15	novel	2381	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	96.4254973708193	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTCTGTATAATTTTAAG	NA	False	NA	103	True	ACTAAA	-25	NA	122730046	122752871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225_122742329_122747383_122747475_122748172_122748272_122749598_122749671_122751302_122751478_122752537
ENSMUSG00000028657.15_122752840_122779657_1	chr4	+	2576	13	NIC	ENSMUSG00000028657.15	novel	2573	10	NA	NA	22793	26689	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAAGAACCGCCCAGCGGT	NA	False	NA	NA	False	NA	NA	NA	122752839	122779657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779606
ENSMUSG00000028668.6_135732604_135748969_1	chr4	-	2678	11	FSM	ENSMUSG00000028668.6	ENSMUST00000030427.6	4708	11	105	1925	105	-1925	multi-exon	FALSE	canonical	3	104	junction_6	17.5182761709022	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCAGGGTTTTTTGTTTTT	7809	False	NA	-9	True	AATAAA	-28	NA	135748969	135732603	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135732989_135733481_135733661_135734422_135734535_135735090_135735272_135736356_135736455_135736556_135736713_135737060_135737176_135737539_135738720_135740180_135740288_135741710_135741768_135748861
ENSMUSG00000028668.6_135732604_135749074_1	chr4	-	2783	11	FSM	ENSMUSG00000028668.6	ENSMUST00000030427.6	4708	11	0	1925	0	-1925	multi-exon	FALSE	canonical	3	104	junction_6	17.5182761709022	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCAGGGTTTTTTGTTTTT	7704	False	NA	-9	True	AATAAA	-28	NA	135749074	135732603	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135732989_135733481_135733661_135734422_135734535_135735090_135735272_135736356_135736455_135736556_135736713_135737060_135737176_135737539_135738720_135740180_135740288_135741710_135741768_135748861
ENSMUSG00000028669.16_135702913_135706212_1	chr4	-	1109	3	FSM	ENSMUSG00000028669.16	ENSMUST00000123737.2	530	3	213	-792	213	-142	multi-exon	FALSE	canonical	3	537	junction_2	20	418	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTGTCTTTTCTTCTGTG	NA	False	NA	-1	True	AATAAA	-16	NA	135706212	135702912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135703808_135704459_135704569_135706107
ENSMUSG00000028670.15_135695535_135699914_1	chr4	-	1598	10	NNC	ENSMUSG00000028670.15	novel	1626	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	142.996848795462	893	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCCTTATGTGGTACA	NA	False	NA	-11	True	ATTAAA	-20	NA	135699914	135695534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_135696379_135696454_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699833
ENSMUSG00000028670.15_135695535_135699914_2	chr4	-	1679	9	NIC	ENSMUSG00000028670.15	novel	1626	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	428	junction_2	20.3127884594902	894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCCTTATGTGGTACA	NA	False	NA	-11	True	ATTAAA	-20	NA	135699914	135695534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
ENSMUSG00000028671.17_135691071_135695489_1	chr4	+	1391	11	NNC	ENSMUSG00000028671.17	novel	1430	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	49.7916659693166	657	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGATTCTCACAGATGGC	4595	False	NA	11	True	AATAAA	-19	NA	135691070	135695489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_135691100_135692644_135692768_135692876_135692993_135693313_135693428_135693680_135693858_135694123_135694238_135694322_135694390_135694481_135694568_135694662_135694741_135694899_135695015_135695117
ENSMUSG00000028672.14_135673776_135689928_1	chr4	+	1393	9	NNC	ENSMUSG00000028672.14	novel	1418	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	268.173800920224	1508	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAACGTGTGTTTATGGG	NA	False	NA	NA	False	ATTAAA	-23	NA	135673775	135689928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_135673852_135677860_135677945_135679681_135679790_135681167_135681264_135682897_135683039_135686033_135686098_135687287_135687477_135688093_135688220_135689419
ENSMUSG00000028673.11_135648046_135666600_1	chr4	+	1503	8	FSM	ENSMUSG00000028673.11	ENSMUST00000030434.5	2525	8	0	1022	0	0	multi-exon	FALSE	canonical	3	268	junction_1	34.7786000351964	746	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGTGGTCAATCTCCCAA	NA	False	NA	20	True	AATAAA	-20	NA	135648045	135666600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_135648462_135650277_135650413_135652859_135652998_135657209_135657316_135660209_135660411_135662000_135662192_135664233_135664334_135666384
ENSMUSG00000028675.13_135598568_135601161_1	chr4	-	1580	3	FSM	ENSMUSG00000028675.13	ENSMUST00000030436.12	1919	3	0	339	0	-339	multi-exon	FALSE	canonical	3	336	junction_2	18.5	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGTTTTTTTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	135601161	135598567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135599766_135600205_135600411_135600984
ENSMUSG00000028675.13_135598796_135601161_1	chr4	-	1352	3	FSM	ENSMUSG00000028675.13	ENSMUST00000030436.12	1919	3	0	567	0	-567	multi-exon	FALSE	canonical	3	336	junction_2	18.5	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAATGTTTTCTTAGCCTT	NA	False	NA	NA	False	AATACA	-21	NA	135601161	135598795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135599766_135600205_135600411_135600984
ENSMUSG00000028676.18_135583443_135586300_1	chr4	+	475	3	FSM	ENSMUSG00000028676.18	ENSMUST00000129718.2	717	3	0	242	0	188	multi-exon	FALSE	canonical	3	381	junction_2	671.5	1225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAGAAAAGCTGGAAGAAG	4706	False	NA	NA	False	AAGAAA	-4	NA	135583442	135586300	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_135583603_135585615_135585783_135586152
ENSMUSG00000028676.18_135583443_135591515_1	chr4	+	1060	6	NNC	ENSMUSG00000028676.18	novel	3058	6	NA	NA	0	335	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	578.7306800231	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAAGAGTCCAGTTTGT	4706	False	NA	9	True	ATTAAA	-23	NA	135583442	135591515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_135583603_135585615_135585716_135589081_135589189_135590350_135590514_135590833_135590888_135591039
ENSMUSG00000028676.18_135583443_135593126_1	chr4	+	3098	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	216	junction_3	533.493960186576	5217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGATTAACTGGAATTAT	4706	False	NA	NA	False	AATAAA	-17	NA	135583442	135593126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_135583603_135585615_135585783_135586152_135586513_135589081_135589189_135590350_135590514_135590833_135590888_135591039
ENSMUSG00000028676.18_135583443_135593126_2	chr4	+	2671	6	NNC	ENSMUSG00000028676.18	novel	3058	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	578.7306800231	3995	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGATTAACTGGAATTAT	4706	False	NA	NA	False	AATAAA	-17	NA	135583442	135593126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_135583603_135585615_135585716_135589081_135589189_135590350_135590514_135590833_135590888_135591039
ENSMUSG00000028676.18_135583443_135594696_1	chr4	+	844	6	NNC	ENSMUSG00000028676.18	novel	3754	6	NA	NA	0	-997	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	623.730198082472	1164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGTGGAAACTAATCCC	4706	False	NA	NA	False	NA	NA	NA	135583442	135594696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_135583603_135585615_135585716_135589081_135589189_135590350_135590514_135590833_135590888_135594436
ENSMUSG00000028676.18_135583443_135595693_1	chr4	+	1841	6	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	623.730198082472	1376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGGATTCCTTAGTTC	4706	False	NA	14	True	AATAAA	-21	NA	135583442	135595693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_135583603_135585615_135585716_135589081_135589189_135590350_135590514_135590833_135590888_135594436
ENSMUSG00000028676.18_135583443_135596093_1	chr4	+	2241	6	NNC	ENSMUSG00000028676.18	novel	3754	6	NA	NA	0	400	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	623.730198082472	1461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGCGTTTATTTCGAGAT	4706	False	NA	6	True	AATAAA	-17	NA	135583442	135596093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_135583603_135585615_135585716_135589081_135589189_135590350_135590514_135590833_135590888_135594436
ENSMUSG00000028677.20_117128661_117146362_1	chr4	-	1810	10	ISM	ENSMUSG00000028677.20	ENSMUST00000221654.2	1949	11	281	-8	-52	0	3prime_fragment	TRUE	canonical	0	0	junction_5	318.755914977798	517	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	9851	False	NA	NA	False	ATTAAA	-14	NA	117146362	117128660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222
ENSMUSG00000028683.15_116938785_116944045_1	chr4	+	233	2	NNC	ENSMUSG00000028683.15	novel	541	2	NA	NA	307	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	301	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGTGTGGCTCAGTGGT	NA	False	NA	16	True	AATAAA	-16	NA	116938784	116944045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_116938859_116943886
ENSMUSG00000028684.15_116847414_116851561_1	chr4	-	1188	10	FSM	ENSMUSG00000028684.15	ENSMUST00000030446.15	1489	10	49	252	0	0	multi-exon	FALSE	canonical	3	335	junction_9	15.6331398550769	3522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTAGCATGTTCTTTTGTA	NA	False	NA	-19	True	AATAAA	-16	NA	116851561	116847413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116849760_116849923_116850022_116850221_116850444_116850508_116850584_116850665_116850781_116850895_116851527
ENSMUSG00000028684.15_116847414_116851561_2	chr4	-	1026	9	NIC	ENSMUSG00000028684.15	novel	1489	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_4	116.944898884047	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTAGCATGTTCTTTTGTA	NA	False	NA	-19	True	AATAAA	-16	NA	116851561	116847413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116850022_116850221_116850444_116850508_116850584_116850665_116850781_116850895_116851527
ENSMUSG00000028684.15_116847414_116851561_3	chr4	-	1125	9	NIC	ENSMUSG00000028684.15	novel	1489	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_6	116.039594535658	2720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTAGCATGTTCTTTTGTA	NA	False	NA	-19	True	AATAAA	-16	NA	116851561	116847413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116849760_116849923_116850022_116850221_116850584_116850665_116850781_116850895_116851527
ENSMUSG00000028687.18_116664935_116676628_1	chr4	+	1732	17	NIC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	43.6183286446191	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664934	116676628	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_116664969_116668045_116668139_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
ENSMUSG00000028688.14_116661199_116664489_1	chr4	-	1997	8	NNC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	256	0	intron_retention	FALSE	canonical	2	4	junction_7	42.0500188065672	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	2287	False	NA	0	True	TTTAAA	-42	NA	116664489	116661198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664409
ENSMUSG00000028688.14_116661199_116664803_1	chr4	-	2101	8	NIC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	0	0	intron_retention	FALSE	canonical	2	10	junction_7	40.0209129004794	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	1973	False	NA	0	True	TTTAAA	-42	NA	116664803	116661198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116664002_116664664
ENSMUSG00000028689.15_116565793_116572296_1	chr4	+	903	6	NIC	ENSMUSG00000028689.15	novel	1112	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	33.0187825335823	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATGTGTTCTCTGTAAA	5643	False	NA	11	True	AATAAA	-15	NA	116565792	116572296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_116565854_116566634_116566817_116566920_116567003_116567297_116567482_116571212_116571347_116572036
ENSMUSG00000028689.15_116565793_116572296_2	chr4	+	1543	10	FSM	ENSMUSG00000028689.15	ENSMUST00000106464.3	1213	10	-334	4	0	0	multi-exon	FALSE	canonical	3	19	junction_2	20.3239201040316	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATGTGTTCTCTGTAAA	5643	False	NA	11	True	AATAAA	-15	NA	116565792	116572296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_116566292_116566436_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
ENSMUSG00000028689.15_116565793_116572296_3	chr4	+	1071	9	NIC	ENSMUSG00000028689.15	novel	1112	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	23.2671307857243	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATGTGTTCTCTGTAAA	5643	False	NA	11	True	AATAAA	-15	NA	116565792	116572296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_116565854_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
ENSMUSG00000028690.5_116561586_116565529_1	chr4	-	561	3	ISM	ENSMUSG00000028690.5	ENSMUST00000030453.5	2106	4	74	2110	-44	0	5prime_fragment	FALSE	canonical	3	184	junction_1	0	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCCCGGCTAGATTTTT	NA	False	NA	NA	False	AATATA	-39	NA	116565529	116561585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_116561857_116563077_116563273_116565434
ENSMUSG00000028691.13_116542796_116556712_1	chr4	+	932	6	FSM	ENSMUSG00000028691.13	ENSMUST00000135573.8	2294	6	55	1307	0	243	multi-exon	FALSE	canonical	3	22651	junction_3	699.316637868713	51987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGATTCATTCTTTAA	NA	False	NA	31	True	ATTAAA	-16	NA	116542795	116556712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
ENSMUSG00000028692.15_116493707_116508601_1	chr4	-	1144	9	FSM	ENSMUSG00000028692.15	ENSMUST00000030455.15	1420	9	276	0	-8	0	multi-exon	FALSE	canonical	3	1447	junction_3	104.145331148352	3761	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTGTGTGCCTGACTTA	NA	False	NA	-1	True	AATAAA	-15	NA	116508601	116493706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_116493867_116494958_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
ENSMUSG00000028693.16_116458806_116484690_1	chr4	-	1557	14	FSM	ENSMUSG00000028693.16	ENSMUST00000030457.12	2118	14	4	557	0	0	multi-exon	FALSE	canonical	3	48	junction_9	345.747385294336	1101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	-7	True	AATAAA	-15	NA	116484690	116458805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
ENSMUSG00000028693.16_116468189_116484690_1	chr4	-	898	6	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	448	9383	0	475	internal_fragment	FALSE	canonical	3	774	junction_3	75.380103475652	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAGAGAAAAAGCCAAAAGA	NA	False	NA	NA	False	AATAAA	-43	NA	116484690	116468188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
ENSMUSG00000028693.16_116468441_116484691_1	chr4	-	647	6	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	447	9635	-1	223	internal_fragment	FALSE	canonical	3	774	junction_3	75.380103475652	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAAGACATGGATATAAG	NA	False	NA	12	True	GATAAA	-31	NA	116484691	116468440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
ENSMUSG00000028693.16_116468940_116484690_1	chr4	-	741	5	FSM	ENSMUSG00000028693.16	ENSMUST00000154811.8	1017	5	0	276	0	-276	multi-exon	FALSE	canonical	3	774	junction_2	71.8487995724355	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTCTGATAAATATTT	NA	False	NA	NA	False	ATTAAA	-19	NA	116484690	116468939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
ENSMUSG00000028696.13_116364746_116381715_1	chr4	+	1365	5	ISM	ENSMUSG00000028696.13	ENSMUST00000106479.8	2118	9	0	13717	0	-13717	5prime_fragment	FALSE	canonical	3	66	junction_1	9.20258115965298	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACCATCTCTTTGAACTTA	NA	False	NA	NA	False	AATAAA	-25	NA	116364745	116381715	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_116364848_116367718_116368061_116372264_116372697_116377855_116378012_116381382
ENSMUSG00000028699.10_116019802_116024798_1	chr4	-	1250	8	FSM	ENSMUSG00000028699.10	ENSMUST00000030465.10	1985	8	-1	736	0	703	multi-exon	FALSE	canonical	0	0	junction_3	1.48461497791618	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACCTGTATATGCTTGGA	NA	False	NA	NA	False	TATAAA	-20	NA	116024798	116019801	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_116020233_116020503_116020588_116020824_116020978_116021058_116021158_116021263_116021339_116021515_116021723_116024204_116024270_116024662
ENSMUSG00000028700.15_115981037_115996047_1	chr4	+	605	3	NNC	ENSMUSG00000028700.15	novel	557	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	2.5	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGTTCATGCATATAACT	NA	False	NA	NA	False	AATGAA	-36	NA	115981036	115996047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_115981314_115994842_115995026_115995902
ENSMUSG00000028701.5_115994449_116001806_1	chr4	-	896	2	FSM	ENSMUSG00000028701.5	ENSMUST00000030469.5	5742	2	0	4846	0	268	multi-exon	FALSE	canonical	3	8	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCCTCCACCTCCAACT	NA	False	NA	NA	False	NA	NA	NA	116001806	115994448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_115995032_116001493
ENSMUSG00000028702.16_115954172_115980868_1	chr4	-	2875	19	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	105	junction_18	100.421042627873	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980868	115954171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980675
ENSMUSG00000028702.16_115954172_115980868_2	chr4	-	2940	19	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	1	19	junction_18	118.034272591366	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980868	115954171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980610
ENSMUSG00000028703.15_115932660_115954240_1	chr4	+	2871	10	FSM	ENSMUSG00000028703.15	ENSMUST00000030471.9	3065	10	194	0	0	0	multi-exon	FALSE	canonical	3	193	junction_3	24.5573151707401	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCCTTCTTGATGATT	NA	False	NA	9	True	AATAAA	-17	NA	115932659	115954240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_115932805_115936585_115936673_115937745_115937817_115945643_115946767_115950068_115950330_115952073_115952239_115952329_115952429_115952988_115953112_115953339_115953416_115953519
ENSMUSG00000028703.15_115954172_115980868_1	chr4	+	2685	19	NNC	ENSMUSG00000028703.15	novel	3065	10	NA	NA	7493	26628	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	234	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCGTTAAGAGCCTCCAGG	NA	False	NA	NA	False	NA	NA	NA	115954171	115980868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980697
ENSMUSG00000028708.17_115696418_115721931_1	chr4	+	680	6	ISM	ENSMUSG00000028708.17	ENSMUST00000153766.8	1377	9	-2	9136	0	132	5prime_fragment	FALSE	canonical	3	99	junction_1	32.5613267542955	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCCTTGGTTTGGGAGAA	NA	False	NA	NA	False	AATAAA	-21	NA	115696417	115721931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735
ENSMUSG00000028708.17_115696418_115736447_1	chr4	+	2480	13	NNC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	42.5606593255112	184	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696417	115736447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_115696439_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
ENSMUSG00000028708.17_115696418_115736447_2	chr4	+	1525	13	NNC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_12	47.0592858943789	136	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696417	115736447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115736141
ENSMUSG00000028719.9_114817806_114844346_1	chr4	-	1805	6	FSM	ENSMUSG00000028719.9	ENSMUST00000030491.9	3170	6	92	1273	0	-1273	multi-exon	FALSE	canonical	3	519	junction_1	39.0302446828098	679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTCTTTTTTCTTTTTT	NA	False	NA	24	True	AATAAA	-43	NA	114844346	114817805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_114818953_114820261_114820359_114820552_114820630_114822079_114822233_114826414_114826562_114844162
ENSMUSG00000028719.9_114818773_114844346_1	chr4	-	838	6	FSM	ENSMUSG00000028719.9	ENSMUST00000030491.9	3170	6	92	2240	0	1535	multi-exon	FALSE	canonical	3	519	junction_1	39.0302446828098	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTGTTTTTTTTTTATT	NA	False	NA	NA	False	ATTAAA	-1	NA	114844346	114818772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_114818953_114820261_114820359_114820552_114820630_114822079_114822233_114826414_114826562_114844162
ENSMUSG00000028729.16_118478047_118483182_1	chr4	+	1111	9	NNC	ENSMUSG00000028729.16	novel	2960	9	NA	NA	0	367	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	801.059991121139	17160	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTGGGTTAAAACCAGAT	NA	False	NA	23	True	AATAAA	-23	NA	118478046	118483182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481419_118482719_118482883_118483016
ENSMUSG00000028729.16_118478047_118483182_2	chr4	+	1118	9	FSM	ENSMUSG00000028729.16	ENSMUST00000030501.15	2960	9	51	1791	0	367	multi-exon	FALSE	canonical	3	2261	junction_5	110.190105612981	17506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTGGGTTAAAACCAGAT	NA	False	NA	23	True	AATAAA	-23	NA	118478046	118483182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016
ENSMUSG00000028737.16_139350420_139376998_1	chr4	+	3136	15	FSM	ENSMUSG00000028737.16	ENSMUST00000039818.10	3382	15	243	3	0	0	multi-exon	FALSE	canonical	3	190	junction_3	22.7807876447301	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATATTTTGATCGTGTGT	NA	False	NA	23	True	NA	NA	NA	139350419	139376998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_139350509_139361025_139361120_139361207_139361301_139361974_139362023_139362699_139362856_139364269_139364420_139364496_139364572_139365685_139365874_139367923_139367998_139369387_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468
ENSMUSG00000028737.16_139369180_139376998_1	chr4	+	2267	7	NNC	ENSMUSG00000028737.16	novel	4142	15	NA	NA	18760	0	intron_retention	FALSE	canonical	3	14	junction_1	86.9471423081607	130	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATATTTTGATCGTGTGT	5572	False	NA	23	True	NA	NA	NA	139369179	139376998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_139369278_139369387_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468
ENSMUSG00000028741.14_139074756_139079636_1	chr4	-	1017	8	NNC	ENSMUSG00000028741.14	novel	930	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	465.785489736402	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGACTCTTTCTTTTTTTT	5947	False	NA	-12	True	AATAAA	-34	NA	139079636	139074755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_139075114_139075231_139075309_139075631_139075784_139075992_139076061_139076316_139076399_139076924_139077089_139077746_139077806_139079579
ENSMUSG00000028741.14_139074756_139079636_2	chr4	-	952	8	NNC	ENSMUSG00000028741.14	novel	1221	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	366.140265304912	3029	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGACTCTTTCTTTTTTTT	5947	False	NA	-12	True	AATAAA	-34	NA	139079636	139074755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_139075117_139075239_139075309_139075631_139075784_139075992_139076061_139076316_139076399_139076924_139077029_139077746_139077806_139079579
ENSMUSG00000028741.14_139074756_139079636_3	chr4	-	956	8	NNC	ENSMUSG00000028741.14	novel	930	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	461.97013773973	2490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGACTCTTTCTTTTTTTT	5947	False	NA	-12	True	AATAAA	-34	NA	139079636	139074755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_139075114_139075231_139075309_139075631_139075784_139075992_139076056_139076312_139076399_139076924_139077029_139077746_139077806_139079579
ENSMUSG00000028741.14_139074756_139079636_4	chr4	-	949	8	NNC	ENSMUSG00000028741.14	novel	930	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	455.764977028418	2159	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGACTCTTTCTTTTTTTT	5947	False	NA	-12	True	AATAAA	-34	NA	139079636	139074755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_139075114_139075231_139075309_139075631_139075784_139076000_139076061_139076316_139076399_139076924_139077029_139077746_139077806_139079579
ENSMUSG00000028741.14_139074756_139079636_5	chr4	-	952	8	NNC	ENSMUSG00000028741.14	novel	930	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	461.97013773973	972	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGACTCTTTCTTTTTTTT	5947	False	NA	-12	True	AATAAA	-34	NA	139079636	139074755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_139075114_139075231_139075309_139075631_139075784_139075992_139076052_139076312_139076399_139076924_139077029_139077746_139077806_139079579
ENSMUSG00000028741.14_139074756_139079864_1	chr4	-	1177	8	NNC	ENSMUSG00000028741.14	novel	930	8	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	455.764977028418	4726	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGACTCTTTCTTTTTTTT	5719	False	NA	-12	True	AATAAA	-34	NA	139079864	139074755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_139075114_139075231_139075309_139075631_139075784_139076000_139076061_139076316_139076399_139076924_139077029_139077746_139077806_139079579
ENSMUSG00000028741.14_139074756_139079864_5	chr4	-	1184	8	NNC	ENSMUSG00000028741.14	novel	930	8	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	461.97013773973	4998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGACTCTTTCTTTTTTTT	5719	False	NA	-12	True	AATAAA	-34	NA	139079864	139074755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_139075114_139075231_139075309_139075631_139075784_139075992_139076056_139076312_139076399_139076924_139077029_139077746_139077806_139079579
ENSMUSG00000028744.16_139025841_139029633_1	chr4	-	1011	6	NNC	ENSMUSG00000028744.16	novel	1405	9	NA	NA	8315	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_5	55.3664158131985	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGCCTGTTTCTGCTGC	NA	False	NA	-5	True	AGTAAA	-13	NA	139029633	139025840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_139026281_139027536_139027723_139028322_139028416_139028560_139028704_139029100_139029189_139029572
ENSMUSG00000028745.19_138920250_139018577_1	chr4	+	1078	9	NNC	ENSMUSG00000028745.19	novel	1674	9	NA	NA	0	-174	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	546.663744910891	6254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTCCAAGGCCTGCT	NA	False	NA	18	True	AATAAA	-18	NA	138920249	139018577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_138920340_138966219_138966314_138984579_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
ENSMUSG00000028745.19_138920250_139018577_2	chr4	+	1087	9	NNC	ENSMUSG00000028745.19	novel	1674	9	NA	NA	0	-174	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	540.44842492138	5979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTCCAAGGCCTGCT	NA	False	NA	18	True	AATAAA	-18	NA	138920249	139018577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015149_139018313
ENSMUSG00000028745.19_138920250_139018755_1	chr4	+	1260	9	FSM	ENSMUSG00000028745.19	ENSMUST00000102508.10	1674	9	40	374	0	4	multi-exon	FALSE	canonical	3	1402	junction_1	117.624136553685	8298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGTGTGTGAGAGAAGAAA	NA	False	NA	14	True	AAAACA	-19	NA	138920249	139018755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
ENSMUSG00000028751.14_138606671_138610128_1	chr4	+	801	4	NNC	ENSMUSG00000028751.14	novel	786	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.4986771653491	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCTTCCATTATTTCTTC	NA	False	NA	NA	False	NA	NA	NA	138606670	138610128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_138606808_138607646_138607801_138607980_138608088_138609725
ENSMUSG00000028757.5_138032186_138039537_1	chr4	+	1573	11	FSM	ENSMUSG00000028757.5	ENSMUST00000030538.5	2120	11	145	402	145	-402	multi-exon	FALSE	canonical	3	2240	junction_8	67.8427593778437	1383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCACCTGGCCCCATGA	NA	False	NA	32	True	AATAAA	-18	NA	138032185	138039537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_138032350_138032465_138032577_138035553_138035641_138036660_138036765_138036900_138036996_138037494_138037589_138037913_138038063_138038151_138038300_138038720_138038842_138038950_138039058_138039144
ENSMUSG00000028757.5_138032186_138039939_1	chr4	+	1975	11	FSM	ENSMUSG00000028757.5	ENSMUST00000030538.5	2120	11	145	0	145	0	multi-exon	FALSE	canonical	3	2240	junction_8	67.8427593778437	1915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGTGTTCTTTTAGTTC	NA	False	NA	37	True	NA	NA	NA	138032185	138039939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_138032350_138032465_138032577_138035553_138035641_138036660_138036765_138036900_138036996_138037494_138037589_138037913_138038063_138038151_138038300_138038720_138038842_138038950_138039058_138039144
ENSMUSG00000028763.19_137196080_137239394_1	chr4	+	1413	10	ISM	ENSMUSG00000028763.19	ENSMUST00000030547.15	14187	97	0	58547	0	-16814	5prime_fragment	TRUE	canonical	3	21	junction_4	6.76227735764575	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGCCGTCCCTAGT	NA	False	NA	NA	False	ATTAAA	-15	NA	137196079	137239394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_137196236_137228369_137228506_137229586_137229632_137235111_137235222_137235320_137235380_137235614_137235776_137237852_137237982_137238217_137238473_137238556_137238677_137239152
ENSMUSG00000028772.20_130202533_130209256_1	chr4	-	659	4	NNC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	3276	6643	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4572	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTCCCGGCTGGACAGC	NA	False	NA	NA	False	NA	NA	NA	130209256	130202532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_130202644_130206102_130206257_130207746_130207849_130208964
ENSMUSG00000028772.20_130202533_130209256_2	chr4	-	670	4	NNC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	3276	6643	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	18858	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTCCCGGCTGGACAGC	NA	False	NA	NA	False	NA	NA	NA	130209256	130202532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_130202636_130206083_130206257_130207746_130207849_130208964
ENSMUSG00000028772.20_130202533_130209256_3	chr4	-	673	4	NNC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	3276	6643	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	36698	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTCCCGGCTGGACAGC	NA	False	NA	NA	False	NA	NA	NA	130209256	130202532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_130202644_130206088_130206257_130207746_130207849_130208964
ENSMUSG00000028772.20_130202533_130209256_4	chr4	-	612	4	NNC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	3276	6643	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1157	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTCCCGGCTGGACAGC	NA	False	NA	NA	False	NA	NA	NA	130209256	130202532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_130202644_130206083_130206257_130207746_130207783_130208964
ENSMUSG00000028772.20_130202533_130209256_5	chr4	-	605	4	NNC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	3276	6643	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1011	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTCCCGGCTGGACAGC	NA	False	NA	NA	False	NA	NA	NA	130209256	130202532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_130202644_130206083_130206257_130207746_130207849_130209037
ENSMUSG00000028772.20_130202533_130209256_6	chr4	-	672	4	NNC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	3276	6643	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	29262	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTCCCGGCTGGACAGC	NA	False	NA	NA	False	NA	NA	NA	130209256	130202532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_130202644_130206083_130206251_130207746_130207849_130208964
ENSMUSG00000028772.20_130209695_130253721_1	chr4	-	1579	8	FSM	ENSMUSG00000028772.20	ENSMUST00000134159.3	2113	8	15	519	-12	377	multi-exon	FALSE	canonical	3	221	junction_6	38.5094740529747	860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCGCTTTCCCTTGTATT	NA	False	NA	-1	True	CATAAA	-19	NA	130253721	130209694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130243057_130243116_130247928_130248050_130253668
ENSMUSG00000028772.20_130209695_130253721_2	chr4	-	1521	7	NIC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	-12	377	combination_of_known_splicesites	FALSE	canonical	3	73	junction_5	86.0503728444373	751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCGCTTTCCCTTGTATT	NA	False	NA	-1	True	CATAAA	-19	NA	130253721	130209694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130247928_130248050_130253668
ENSMUSG00000028772.20_130209872_130253721_1	chr4	-	1344	7	NIC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	-12	200	combination_of_known_splicesites	FALSE	canonical	3	73	junction_5	86.0503728444373	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTTATTCCTATAATCCT	NA	False	NA	-6	True	CATAAA	-34	NA	130253721	130209871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130247928_130248050_130253668
ENSMUSG00000028772.20_130209872_130253721_2	chr4	-	1402	8	FSM	ENSMUSG00000028772.20	ENSMUST00000134159.3	2113	8	15	696	-12	200	multi-exon	FALSE	canonical	3	221	junction_6	38.5094740529747	728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTTATTCCTATAATCCT	NA	False	NA	-6	True	CATAAA	-34	NA	130253721	130209871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130243057_130243116_130247928_130248050_130253668
ENSMUSG00000028772.20_130210237_130253721_1	chr4	-	1037	8	FSM	ENSMUSG00000028772.20	ENSMUST00000134159.3	2113	8	15	1061	-12	-165	multi-exon	FALSE	canonical	3	221	junction_6	38.5094740529747	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGCGCTCAGTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	130253721	130210236	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130243057_130243116_130247928_130248050_130253668
ENSMUSG00000028772.20_130230287_130253750_1	chr4	-	909	6	NIC	ENSMUSG00000028772.20	novel	286	3	NA	NA	-14	362	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	104.010384096974	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCGGGGTGCATATGTGGG	NA	False	NA	NA	False	ATTAAA	-18	NA	130253750	130230286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_130230738_130230866_130230963_130232276_130232378_130243057_130243116_130247928_130248050_130253668
ENSMUSG00000028773.9_130202533_130209256_1	chr4	+	678	4	FSM	ENSMUSG00000028773.9	ENSMUST00000070532.8	823	4	145	0	145	0	multi-exon	FALSE	canonical	3	4337	junction_3	149.244765402342	46164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTTGGTCCTC	NA	False	NA	31	True	AATAAA	-20	NA	130202532	130209256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_130202644_130206083_130206257_130207746_130207849_130208964
ENSMUSG00000028788.15_129738937_129741812_1	chr4	+	430	3	ISM	ENSMUSG00000028788.15	ENSMUST00000165853.2	3382	6	24436	1984	5993	1518	3prime_fragment	FALSE	canonical	3	2484	junction_2	109	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGGGGATTAATTTAGT	NA	False	NA	NA	False	AATAAA	-25	NA	129738936	129741812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_129738986_129740257_129740333_129741506
ENSMUSG00000028792.15_128887146_128905322_2	chr4	+	1636	7	NNC	ENSMUSG00000028792.15	novel	1781	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	787.385635434689	10476	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTTGTGGAGTTTTTT	2998	False	NA	29	True	AATAAA	-19	NA	128887145	128905322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901521_128901579_128901826_128902023_128904355
ENSMUSG00000028795.16_129513069_129517692_1	chr4	-	828	6	NNC	ENSMUSG00000028795.16	novel	744	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	35.5336460273921	928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTACTCGGTGCTCTCCTT	NA	False	NA	-4	True	ATTAAA	-14	NA	129517692	129513068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_129513240_129514249_129514273_129514475_129514665_129514772_129514944_129516392_129516581_129517606
ENSMUSG00000028797.21_129494484_129501685_1	chr4	+	1026	6	FSM	ENSMUSG00000028797.21	ENSMUST00000151969.8	875	6	4	-155	0	15	multi-exon	FALSE	canonical	3	29	junction_3	309.843831631356	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCCAAAACAAACAAACAAGA	3187	False	NA	NA	False	NA	NA	NA	129494483	129501685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129494525_129494775_129495037_129495199_129495327_129495987_129496055_129500879_129500973_129501248
ENSMUSG00000028797.21_129494484_129501685_2	chr4	+	899	5	FSM	ENSMUSG00000028797.21	ENSMUST00000152126.8	1519	5	-9	629	0	15	multi-exon	FALSE	canonical	3	284	junction_2	194.785779768442	1055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCCAAAACAAACAAACAAGA	3187	False	NA	NA	False	NA	NA	NA	129494483	129501685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129501248
ENSMUSG00000028797.21_129494484_129501685_3	chr4	+	1009	6	NIC	ENSMUSG00000028797.21	novel	769	5	NA	NA	0	15	combination_of_known_junctions	FALSE	canonical	3	74	junction_2	295.098220936691	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCCAAAACAAACAAACAAGA	3187	False	NA	NA	False	NA	NA	NA	129494483	129501685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_129494525_129494775_129494928_129495199_129495419_129495987_129496055_129500879_129500973_129501248
ENSMUSG00000028797.21_129494484_129501685_4	chr4	+	785	5	NNC	ENSMUSG00000028797.21	novel	1437	5	NA	NA	0	15	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_1	305.583049268116	828	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCCAAAACAAACAAACAAGA	3187	False	NA	NA	False	NA	NA	NA	129494483	129501685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_129494525_129494780_129494928_129495987_129496055_129500879_129500973_129501248
ENSMUSG00000028797.21_129494484_129501685_5	chr4	+	790	5	FSM	ENSMUSG00000028797.21	ENSMUST00000102591.10	1437	5	11	636	0	15	multi-exon	FALSE	canonical	3	325	junction_2	181.287582310538	967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCCAAAACAAACAAACAAGA	3187	False	NA	NA	False	NA	NA	NA	129494483	129501685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129494525_129494775_129494928_129495987_129496055_129500879_129500973_129501248
ENSMUSG00000028797.21_129494484_129501685_6	chr4	+	1118	6	NIC	ENSMUSG00000028797.21	novel	875	6	NA	NA	0	15	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	299.030834530488	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCCAAAACAAACAAACAAGA	3187	False	NA	NA	False	NA	NA	NA	129494483	129501685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_129494525_129494775_129495037_129495199_129495419_129495987_129496055_129500879_129500973_129501248
ENSMUSG00000028797.21_129494484_129501685_7	chr4	+	1041	4	NIC	ENSMUSG00000028797.21	novel	1437	5	NA	NA	0	15	intron_retention	FALSE	canonical	3	325	junction_1	193.096406549221	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCCAAAACAAACAAACAAGA	3187	False	NA	NA	False	NA	NA	NA	129494483	129501685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_129494928_129495987_129496055_129500879_129500973_129501248
ENSMUSG00000028797.21_129494484_129501685_8	chr4	+	894	5	NNC	ENSMUSG00000028797.21	novel	1519	5	NA	NA	0	15	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_1	310.25584200785	882	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCCAAAACAAACAAACAAGA	3187	False	NA	NA	False	NA	NA	NA	129494483	129501685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_129494525_129494780_129495037_129495987_129496055_129500879_129500973_129501248
ENSMUSG00000028797.21_129494484_129502321_1	chr4	+	734	6	NNC	ENSMUSG00000028797.21	novel	1437	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_5	271.450621660736	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3187	False	NA	16	True	AATAAA	-16	NA	129494483	129502321	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_129494525_129494775_129494928_129495987_129496055_129500879_129500973_129501248_129501308_129501999
ENSMUSG00000028797.21_129509412_129512878_1	chr4	+	1259	6	Genic_Genomic	ENSMUSG00000028797.21	novel	1575	5	NA	NA	13609	-489	multi-exon	FALSE	non_canonical	0	0	junction_1	0	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCGCTTGCGTGCGTTTGC	NA	False	NA	NA	False	NA	NA	NA	129509411	129512878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_129509881_129510753_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
ENSMUSG00000028797.21_129509552_129512878_1	chr4	+	1119	6	Genic_Genomic	ENSMUSG00000028797.21	novel	1575	5	NA	NA	13749	-489	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCGCTTGCGTGCGTTTGC	NA	False	NA	NA	False	NA	NA	NA	129509551	129512878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_129509881_129510753_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
ENSMUSG00000028798.17_129485753_129494413_1	chr4	-	1089	11	NNC	ENSMUSG00000028798.17	novel	1123	11	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_1	420.664343628028	14103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTGCAGCCTGTCTGT	6405	False	NA	0	True	AATAAA	-32	NA	129494413	129485752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_129485922_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
ENSMUSG00000028800.16_129409897_129436484_1	chr4	-	2007	14	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	532.108433136879	5396	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTGGTTGGTTTAAGTT	8830	False	NA	-5	True	AATAAA	-22	NA	129436484	129409896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_129410430_129410692_129410733_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
ENSMUSG00000028800.16_129409897_129436484_2	chr4	-	2009	14	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	523.750313157467	5248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTGGTTGGTTTAAGTT	8830	False	NA	-5	True	AATAAA	-22	NA	129436484	129409896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412754_129412840_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
ENSMUSG00000028800.16_129409897_129436484_3	chr4	-	2005	14	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	532.108433136879	5308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTGGTTGGTTTAAGTT	8830	False	NA	-5	True	AATAAA	-22	NA	129436484	129409896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_129410430_129410692_129410727_129411144_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
ENSMUSG00000028800.16_129410199_129436484_1	chr4	-	1714	14	FSM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	22	302	0	-138	multi-exon	FALSE	canonical	3	1463	junction_10	202.513203601978	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACCAGAAGAGAAAAATCC	8830	False	NA	NA	False	AAGAAA	-2	NA	129436484	129410198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
ENSMUSG00000028807.3_129247421_129271688_1	chr4	-	2100	5	FSM	ENSMUSG00000028807.3	ENSMUST00000030610.3	2321	5	221	0	221	0	multi-exon	FALSE	canonical	3	128	junction_4	9.35414346693485	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTCGTGACACTTTTA	NA	False	NA	0	True	AATAAA	-24	NA	129271688	129247420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_129248298_129251497_129251668_129253690_129254494_129263021_129263116_129271532
ENSMUSG00000028809.17_135070948_135080457_2	chr4	-	777	5	ISM	ENSMUSG00000028809.17	ENSMUST00000131373.8	619	6	-4	1226	-4	0	5prime_fragment	FALSE	canonical	3	1232	junction_4	48.602983447521	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGACAAAG	NA	False	NA	NA	False	NA	NA	NA	135080457	135070947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
ENSMUSG00000028811.13_129083553_129113029_1	chr4	+	2538	13	FSM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	0	371	0	-371	multi-exon	FALSE	canonical	3	1466	junction_9	124.991221914003	3083	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCACGGAGTCTCGTG	713	False	NA	25	True	AATAAA	-15	NA	129083552	129113029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
ENSMUSG00000028811.13_129083695_129104645_1	chr4	+	1294	8	ISM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	142	8755	0	0	5prime_fragment	FALSE	canonical	3	1488	junction_7	138.160066884873	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATATTTTAAAAGAAGTCT	855	False	NA	NA	False	NA	NA	NA	129083694	129104645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285
ENSMUSG00000028811.13_129083695_129105786_1	chr4	+	1425	9	NNC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	0	1141	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_8	548.468036899143	164	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCAGAGTTGTAGGCCTA	855	False	NA	NA	False	NA	NA	NA	129083694	129105786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129105381
ENSMUSG00000028811.13_129083695_129112602_1	chr4	+	1969	13	FSM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	142	798	0	146	multi-exon	FALSE	canonical	3	1466	junction_9	124.991221914003	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCATGGTCCCTGTAATTG	855	False	NA	13	True	AATAGA	-19	NA	129083694	129112602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
ENSMUSG00000028811.13_129083695_129113029_1	chr4	+	2396	13	FSM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	142	371	0	-371	multi-exon	FALSE	canonical	3	1466	junction_9	124.991221914003	3075	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCACGGAGTCTCGTG	855	False	NA	25	True	AATAAA	-15	NA	129083694	129113029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
ENSMUSG00000028820.14_126921066_126921884_1	chr4	+	739	2	ISM	ENSMUSG00000028820.14	ENSMUST00000125453.2	644	3	828	-542	828	76	3prime_fragment	FALSE	canonical	3	1050	junction_1	0	254	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAACTGATGTTTCTACT	NA	False	NA	NA	False	NA	NA	NA	126921065	126921884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_126921110_126921189
ENSMUSG00000028820.14_126921066_126923760_1	chr4	+	307	3	ISM	ENSMUSG00000028820.14	ENSMUST00000030623.8	3465	10	5949	1269	828	-1269	3prime_fragment	FALSE	canonical	3	1050	junction_1	9	866	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGGCTTTCATTCTAGTT	NA	False	NA	8	True	AATAAA	-19	NA	126921065	126923760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_126921110_126921189_126921312_126923619
ENSMUSG00000028820.14_126921066_126924075_1	chr4	+	622	3	ISM	ENSMUSG00000028820.14	ENSMUST00000030623.8	3465	10	5949	954	828	-954	3prime_fragment	FALSE	canonical	3	1050	junction_1	9	3406	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATCTTCAACTTTGCT	NA	False	NA	11	True	AATAAA	-19	NA	126921065	126924075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_126921110_126921189_126921312_126923619
ENSMUSG00000028820.14_126921066_126924589_1	chr4	+	1136	3	ISM	ENSMUSG00000028820.14	ENSMUST00000030623.8	3465	10	5949	440	828	-440	3prime_fragment	FALSE	canonical	3	1050	junction_1	9	6018	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTTCATGTATTACTTC	NA	False	NA	17	True	ATTAAA	-17	NA	126921065	126924589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_126921110_126921189_126921312_126923619
ENSMUSG00000028820.14_126921066_126930806_1	chr4	+	382	5	ISM	ENSMUSG00000028820.14	ENSMUST00000146285.8	925	10	3746	0	828	0	3prime_fragment	FALSE	canonical	3	77	junction_2	363.616126567566	784	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTTGTTCAAGTAGGA	NA	False	NA	18	True	AATAAA	-19	NA	126921065	126930806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_126921110_126921189_126921312_126929600_126929648_126930355_126930443_126930724
ENSMUSG00000028821.9_134658321_134664467_1	chr4	+	865	7	FSM	ENSMUSG00000028821.9	ENSMUST00000030622.3	1369	7	112	392	0	-392	multi-exon	FALSE	canonical	3	670	junction_5	39.6628149390445	3250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGCCACATGCATATGTT	NA	False	NA	11	True	AATAAA	-17	NA	134658320	134664467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_134658330_134658490_134658596_134661766_134661893_134662242_134662361_134662684_134662776_134663293_134663393_134664150
ENSMUSG00000028822.12_134625160_134642326_1	chr4	-	1189	7	NNC	ENSMUSG00000028822.12	novel	1204	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	233.310058362972	4894	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTTCTCGTTATACCTT	NA	False	NA	-20	True	ATTAAA	-19	NA	134642326	134625159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640407_134640507_134642199
ENSMUSG00000028825.8_134603622_134623483_1	chr4	+	1308	9	ISM	ENSMUSG00000028825.8	ENSMUST00000030627.8	1514	10	11775	0	-3499	0	3prime_fragment	FALSE	canonical	3	9	junction_1	6.25999201277446	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACAAGGTCTCTTTCTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	134603621	134623483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_134603813_134607200_134607352_134611324_134611488_134611829_134611994_134612560_134612699_134617612_134617741_134619533_134619614_134621644_134621719_134623264
ENSMUSG00000028830.15_126647337_126670435_1	chr4	+	716	3	NNC	ENSMUSG00000028830.15	novel	4073	24	NA	NA	0	-11692	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	7	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTTGTAATTCATTTT	NA	False	NA	NA	False	AATAAA	-29	NA	126647336	126670435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_126647456_126650691_126650862_126670008
ENSMUSG00000028832.12_134195710_134198601_1	chr4	+	728	3	ISM	ENSMUSG00000028832.12	ENSMUST00000105867.8	802	5	-10	2374	0	607	5prime_fragment	FALSE	canonical	3	455	junction_1	302	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACGCGTTTCCTCACGTT	NA	False	NA	NA	False	AATAAA	-16	NA	134195709	134198601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_134195741_134197413_134197487_134197977
ENSMUSG00000028832.12_134195710_134199081_1	chr4	+	1699	2	FSM	ENSMUSG00000028832.12	ENSMUST00000130253.2	612	2	0	-1087	0	1087	multi-exon	FALSE	canonical	3	455	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAATGAAAAGTTTAACAAA	NA	False	NA	NA	False	NA	NA	NA	134195709	134199081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_134195741_134197413
ENSMUSG00000028832.12_134195710_134201154_1	chr4	+	1063	5	NIC	ENSMUSG00000028832.12	novel	1060	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	447.628473178371	30902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTCTGTTCAGGTAGT	NA	False	NA	11	True	AATAAA	-27	NA	134195709	134201154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_134195741_134197331_134197487_134197977_134198151_134200114_134200307_134200642
ENSMUSG00000028832.12_134195710_134201154_2	chr4	+	975	5	NNC	ENSMUSG00000028832.12	novel	1060	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	432.997113154349	27643	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTCTGTTCAGGTAGT	NA	False	NA	11	True	AATAAA	-27	NA	134195709	134201154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_134195741_134197413_134197487_134197977_134198151_134200114_134200307_134200648
ENSMUSG00000028832.12_134195710_134201154_3	chr4	+	966	5	NNC	ENSMUSG00000028832.12	novel	1060	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	448.061030999126	28088	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTCTGTTCAGGTAGT	NA	False	NA	11	True	AATAAA	-27	NA	134195709	134201154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_134195741_134197428_134197487_134197977_134198151_134200114_134200307_134200642
ENSMUSG00000028832.12_134195710_134201154_4	chr4	+	1472	4	NIC	ENSMUSG00000028832.12	novel	1060	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	455	junction_1	267.265577448516	1631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTCTGTTCAGGTAGT	NA	False	NA	11	True	AATAAA	-27	NA	134195709	134201154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_134195741_134197413_134198151_134200114_134200307_134200642
ENSMUSG00000028832.12_134196894_134201154_1	chr4	+	1077	5	NNC	ENSMUSG00000028832.12	novel	967	4	NA	NA	-159	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	448.061030999126	17883	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTCTGTTCAGGTAGT	NA	False	NA	11	True	AATAAA	-27	NA	134196893	134201154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_134197021_134197413_134197487_134197977_134198151_134200114_134200307_134200642
ENSMUSG00000028837.9_126571472_126603507_1	chr4	+	804	6	NNC	ENSMUSG00000028837.9	novel	859	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1426.83467858053	12915	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGGGTTTGGCCTTA	5429	False	NA	19	True	AATAAA	-21	NA	126571471	126603507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_126571639_126577914_126578038_126580821_126580893_126599850_126600014_126601346_126601397_126603277
ENSMUSG00000028840.11_133971960_133972903_1	chr4	-	634	3	FSM	ENSMUSG00000028840.11	ENSMUST00000030644.8	1994	3	0	1360	0	-1342	multi-exon	FALSE	canonical	3	614	junction_2	27	8291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGCACACCTCCGATACTAA	7668	False	NA	-29	True	AATAAA	-15	NA	133972903	133971959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_133972242_133972335_133972399_133972614
ENSMUSG00000028845.16_126215916_126216807_1	chr4	-	740	2	ISM	ENSMUSG00000028845.16	ENSMUST00000030658.13	1492	10	2185	0	2185	0	intron_retention	FALSE	canonical	3	16	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCAGGCTCTTTTCTGCT	5765	False	NA	NA	False	AATAAA	-13	NA	126216807	126215915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_126216213_126216364
ENSMUSG00000028845.16_126215916_126216807_2	chr4	-	572	3	ISM	ENSMUSG00000028845.16	ENSMUST00000030658.13	1492	10	2185	0	2185	0	3prime_fragment	FALSE	canonical	3	12	junction_2	2	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCAGGCTCTTTTCTGCT	5765	False	NA	NA	False	AATAAA	-13	NA	126216807	126215915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_126216213_126216364_126216445_126216612
ENSMUSG00000028848.14_133311673_133319046_1	chr4	+	1298	5	FSM	ENSMUSG00000028848.14	ENSMUST00000105899.2	996	5	-57	-245	0	0	multi-exon	FALSE	canonical	3	9	junction_1	62.5154980784765	625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTTTTTTTAGTGTGTGT	NA	False	NA	41	True	NA	NA	NA	133311672	133319046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_133312112_133313220_133313378_133315810_133315972_133317077_133317209_133318636
ENSMUSG00000028848.14_133311739_133319046_1	chr4	+	1301	5	FSM	ENSMUSG00000028848.14	ENSMUST00000030661.14	1367	5	66	0	0	0	multi-exon	FALSE	canonical	3	134	junction_3	14.7394029729837	743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTTTTTTTAGTGTGTGT	NA	False	NA	41	True	NA	NA	NA	133311738	133319046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_133312181_133313220_133313378_133315810_133315972_133317077_133317209_133318636
ENSMUSG00000028850.3_133307015_133311554_1	chr4	+	1192	5	ISM	ENSMUSG00000028850.3	ENSMUST00000030662.3	2004	7	4959	0	0	0	3prime_fragment	FALSE	canonical	3	33	junction_1	10.5593560409714	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGCCTTAGTGAAGCCT	NA	False	NA	13	True	AATAAA	-20	NA	133307014	133311554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_133307272_133307961_133308022_133309782_133309905_133310292_133310421_133310929
ENSMUSG00000028857.17_132993356_133004940_1	chr4	-	1466	7	FSM	ENSMUSG00000028857.17	ENSMUST00000134781.8	613	7	-11	-842	-11	0	multi-exon	FALSE	canonical	3	22	junction_5	347.535609686259	797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTCTGTCATTTTCTT	NA	False	NA	-12	True	AATAAA	-14	NA	133004940	132993355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132997980_132998126_132998273_132998359_133004841
ENSMUSG00000028857.17_132993356_133005089_1	chr4	-	1615	7	FSM	ENSMUSG00000028857.17	ENSMUST00000134781.8	613	7	-160	-842	-8	0	multi-exon	FALSE	canonical	3	22	junction_5	347.535609686259	1563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTCTGTCATTTTCTT	NA	False	NA	-12	True	AATAAA	-14	NA	133005089	132993355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132997980_132998126_132998273_132998359_133004841
ENSMUSG00000028861.14_125940770_125949329_1	chr4	+	861	7	NNC	ENSMUSG00000028861.14	novel	937	8	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	500.101906281776	7966	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGATGGAAGATGGCCTT	NA	False	NA	31	True	AATAAA	-16	NA	125940769	125949329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_125941010_125942427_125942507_125944272_125944322_125945117_125945203_125947292_125947352_125948753_125948946_125949172
ENSMUSG00000028863.14_124978958_125003507_1	chr4	+	683	6	FSM	ENSMUSG00000028863.14	ENSMUST00000055213.11	872	6	14	175	0	0	multi-exon	FALSE	canonical	3	84	junction_5	98.9605982196955	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGCCATTCTCTTGTTT	NA	False	NA	-10	True	NA	NA	NA	124978957	125003507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125003369
ENSMUSG00000028863.14_124978958_125003685_1	chr4	+	1173	7	FSM	ENSMUSG00000028863.14	ENSMUST00000154689.8	4550	7	31	3346	0	3	multi-exon	TRUE	canonical	3	173	junction_5	63.7427555796648	831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCAGCTGCCTCTTTGGC	NA	False	NA	43	True	ACTAAA	-19	NA	124978957	125003685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125002115_125002150_125003091
ENSMUSG00000028863.14_124978958_125003862_1	chr4	+	1038	6	FSM	ENSMUSG00000028863.14	ENSMUST00000055213.11	872	6	14	-180	0	180	multi-exon	FALSE	canonical	3	84	junction_5	98.9605982196955	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTCATGTGCTCCTTCTA	NA	False	NA	NA	False	AATAAA	-17	NA	124978957	125003862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125003369
ENSMUSG00000028863.14_124978958_125003862_2	chr4	+	1350	7	FSM	ENSMUSG00000028863.14	ENSMUST00000154689.8	4550	7	31	3169	0	180	multi-exon	FALSE	canonical	3	173	junction_5	63.7427555796648	917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTCATGTGCTCCTTCTA	NA	False	NA	NA	False	AATAAA	-17	NA	124978957	125003862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125002115_125002150_125003091
ENSMUSG00000028868.14_132857851_132923329_1	chr4	+	1869	9	FSM	ENSMUSG00000028868.14	ENSMUST00000084241.12	5642	9	35	3738	0	-486	multi-exon	FALSE	canonical	3	420	junction_8	37.0776212829248	256	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACCATATGCTTCTTCCT	NA	False	NA	52	True	NA	NA	NA	132857850	132923329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916507_132917439_132917571_132919415_132919572_132921706_132922219_132923027
ENSMUSG00000028869.14_124923851_124949173_1	chr4	+	2299	16	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	191.173173385342	1123	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAACTGTGTTCGCTTTCTT	NA	False	NA	28	True	ATTAAA	-22	NA	124923850	124949173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934910_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
ENSMUSG00000028873.17_124812258_124830666_1	chr4	-	1494	11	NNC	ENSMUSG00000028873.17	novel	1626	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	207	junction_10	436.918573649599	5411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTCGGTCATCTGCATT	NA	False	NA	-10	True	AATAAA	-26	NA	124830666	124812257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381_124830522_124830609
ENSMUSG00000028873.17_124812258_124830666_2	chr4	-	1576	10	NNC	ENSMUSG00000028873.17	novel	1626	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_8	519.368443637957	6227	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTCGGTCATCTGCATT	NA	False	NA	-10	True	AATAAA	-26	NA	124830666	124812257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824900_124830147_124830277_124830381
ENSMUSG00000028879.5_132580812_132587937_1	chr4	-	2297	4	ISM	ENSMUSG00000028879.5	ENSMUST00000030698.5	2934	9	23883	0	2634	0	3prime_fragment	FALSE	canonical	3	194	junction_1	12.657891697365	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTTGCACTTGATTGT	NA	False	NA	-4	True	AATAAA	-14	NA	132587937	132580811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_132582870_132584610_132584694_132585729_132585803_132587854
ENSMUSG00000028882.14_132554240_132570445_1	chr4	-	2115	8	NNC	ENSMUSG00000028882.14	novel	2037	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	82.0920339668614	2182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTATGGTCTTGAGTCT	NA	False	NA	-6	True	ATTAAA	-16	NA	132570445	132554239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_132555515_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570119_132570236_132570367
ENSMUSG00000028882.14_132554240_132570445_2	chr4	-	2068	8	NNC	ENSMUSG00000028882.14	novel	2037	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	82.5857624731122	2197	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTATGGTCTTGAGTCT	NA	False	NA	-6	True	ATTAAA	-16	NA	132570445	132554239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_132555515_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132564450_132564520_132567954_132568016_132570367
ENSMUSG00000028882.14_132557403_132570445_1	chr4	-	1192	5	FSM	ENSMUSG00000028882.14	ENSMUST00000131725.8	883	5	-10	-299	0	299	multi-exon	FALSE	canonical	3	165	junction_4	11.2998893799895	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAACAAAAAAACTTGCA	NA	False	NA	NA	False	NA	NA	NA	132570445	132557402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570367
ENSMUSG00000028884.15_132495687_132505794_1	chr4	+	1503	9	FSM	ENSMUSG00000028884.15	ENSMUST00000102561.11	1813	9	41	269	0	-269	multi-exon	FALSE	canonical	3	1317	junction_7	93.1791788706039	6255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCTGAAATGTTGGTT	NA	False	NA	26	True	GATAAA	-16	NA	132495686	132505794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503558_132503667_132503963_132504059_132505100
ENSMUSG00000028886.16_132366390_132449446_1	chr4	+	2497	17	FSM	ENSMUSG00000028886.16	ENSMUST00000081726.13	5160	17	33	2630	0	0	multi-exon	FALSE	canonical	3	62	junction_15	5.48542101848163	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGAAGTTCTGTCCCAG	NA	False	NA	28	True	NA	NA	NA	132366389	132449446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132366467_132384003_132384100_132389205_132389250_132394465_132394546_132397499_132397567_132400206_132400344_132417015_132417102_132420272_132420457_132422057_132422195_132426340_132426425_132428331_132428422_132431662_132431722_132434273_132434435_132437255_132437371_132439152_132439275_132446522_132446624_132448589
ENSMUSG00000028896.14_132059234_132073012_1	chr4	-	2230	10	NNC	ENSMUSG00000028896.14	novel	2278	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	139.444134572476	2518	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	5485	False	NA	-14	True	AATAAA	-17	NA	132073012	132059233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_132060314_132061417_132061566_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132072956
ENSMUSG00000028898.16_132039074_132056800_1	chr4	-	829	7	NIC	ENSMUSG00000028898.16	novel	961	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_3	186.504393752235	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2365	False	NA	0	True	AATAAA	-17	NA	132056800	132039073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_132039318_132041303_132041338_132041515_132041679_132052518_132052572_132053256_132053357_132055779_132055878_132056663
ENSMUSG00000028898.16_132039074_132056800_2	chr4	-	981	8	NIC	ENSMUSG00000028898.16	novel	1130	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	19	junction_6	176.968693184266	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2365	False	NA	0	True	AATAAA	-17	NA	132056800	132039073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132055779_132055878_132056663
ENSMUSG00000028898.16_132039074_132056800_3	chr4	-	1075	9	NNC	ENSMUSG00000028898.16	novel	1130	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	166.805837727581	1747	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2365	False	NA	0	True	AATAAA	-17	NA	132056800	132039073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_132039312_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132053256_132053357_132055779_132055878_132056663
ENSMUSG00000028898.16_132039074_132056800_4	chr4	-	983	8	NIC	ENSMUSG00000028898.16	novel	1130	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_7	168.067042016705	506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2365	False	NA	0	True	AATAAA	-17	NA	132056800	132039073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132053256_132053357_132056663
ENSMUSG00000028898.16_132039074_132056800_6	chr4	-	883	7	NIC	ENSMUSG00000028898.16	novel	1130	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	188.905399605199	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2365	False	NA	0	True	AATAAA	-17	NA	132056800	132039073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132056663
ENSMUSG00000028899.12_132001724_132020157_1	chr4	+	829	6	FSM	ENSMUSG00000028899.12	ENSMUST00000030731.11	3787	6	38	2920	0	134	multi-exon	FALSE	canonical	3	439	junction_3	32.7987804651331	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGTCCCTTTTCCCTGC	NA	False	NA	-46	True	AATAAA	-15	NA	132001723	132020157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132001799_132010104_132010357_132012354_132012433_132016625_132016741_132019173_132019263_132019937
ENSMUSG00000028899.12_132001724_132020404_1	chr4	+	1076	6	FSM	ENSMUSG00000028899.12	ENSMUST00000030731.11	3787	6	38	2673	0	381	multi-exon	FALSE	canonical	3	439	junction_3	32.7987804651331	776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACAGGGTGCATAGCTGA	NA	False	NA	23	True	AATAAA	-17	NA	132001723	132020404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132001799_132010104_132010357_132012354_132012433_132016625_132016741_132019173_132019263_132019937
ENSMUSG00000028899.12_132001724_132020640_1	chr4	+	1312	6	FSM	ENSMUSG00000028899.12	ENSMUST00000030731.11	3787	6	38	2437	0	617	multi-exon	FALSE	canonical	3	439	junction_3	32.7987804651331	1165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAGTGTCCATAGGACCT	NA	False	NA	26	True	AATAAA	-22	NA	132001723	132020640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132001799_132010104_132010357_132012354_132012433_132016625_132016741_132019173_132019263_132019937
ENSMUSG00000028902.5_124608676_124626253_1	chr4	+	1707	17	NNC	ENSMUSG00000028902.5	novel	1820	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	318.074032017312	5119	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTATGAATTTTTTGTT	NA	False	NA	51	True	AATAAA	-38	NA	124608675	124626253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120_124612213_124615816_124615900_124616670_124616810_124617463_124617533_124618551_124618620_124618867_124618976_124620771_124620842_124621872_124622032_124622111_124622223_124623251_124623343_124625163_124625220_124625980
ENSMUSG00000028902.5_124608676_124626253_2	chr4	+	1703	17	NNC	ENSMUSG00000028902.5	novel	1820	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	320.362855797922	5060	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTATGAATTTTTTGTT	NA	False	NA	51	True	AATAAA	-38	NA	124608675	124626253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120_124612213_124615816_124615900_124616680_124616810_124617463_124617533_124618551_124618620_124618867_124618976_124620771_124620842_124621866_124622032_124622111_124622223_124623251_124623343_124625163_124625220_124625980
ENSMUSG00000028902.5_124621928_124626253_1	chr4	+	640	5	NNC	ENSMUSG00000028902.5	novel	1820	17	NA	NA	6402	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	600.408767007944	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTATGAATTTTTTGTT	NA	False	NA	51	True	AATAAA	-38	NA	124621927	124626253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_124622037_124622111_124622223_124623251_124623343_124625163_124625220_124625980
ENSMUSG00000028907.8_124572590_124587393_1	chr4	-	951	8	NNC	ENSMUSG00000028907.8	novel	1603	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	521.705288609638	2591	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGTAATCATGACT	NA	False	NA	NA	False	NA	NA	NA	124587393	124572589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_124572780_124573494_124573606_124575985_124576117_124576205_124576300_124577042_124577142_124577545_124577649_124579881_124579944_124587232
ENSMUSG00000028907.8_124572590_124587393_2	chr4	-	955	8	NNC	ENSMUSG00000028907.8	novel	1603	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	521.705288609638	8564	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGTAATCATGACT	NA	False	NA	NA	False	NA	NA	NA	124587393	124572589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_124572780_124573494_124573606_124575985_124576117_124576205_124576289_124577027_124577142_124577545_124577649_124579881_124579944_124587232
ENSMUSG00000028907.8_124572590_124587393_3	chr4	-	983	8	NNC	ENSMUSG00000028907.8	novel	1603	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	512.374862771389	10008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGTAATCATGACT	NA	False	NA	NA	False	NA	NA	NA	124587393	124572589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_124572780_124573494_124573606_124575985_124576134_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
ENSMUSG00000028907.8_124572590_124587393_4	chr4	-	959	8	NNC	ENSMUSG00000028907.8	novel	1603	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	516.136431892315	6265	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGTAATCATGACT	NA	False	NA	NA	False	NA	NA	NA	124587393	124572589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_124572780_124573494_124573606_124575985_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579888_124579944_124587232
ENSMUSG00000028907.8_124572590_124587393_5	chr4	-	921	8	NNC	ENSMUSG00000028907.8	novel	1603	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_4	514.202850467178	446	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGTAATCATGACT	NA	False	NA	NA	False	NA	NA	NA	124587393	124572589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_124572780_124573494_124573606_124575985_124576117_124576205_124576255_124577027_124577142_124577545_124577649_124579881_124579944_124587232
ENSMUSG00000028907.8_124572590_124587393_6	chr4	-	954	8	NNC	ENSMUSG00000028907.8	novel	1603	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	520.297010938787	4501	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGTAATCATGACT	NA	False	NA	NA	False	NA	NA	NA	124587393	124572589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_124572768_124573494_124573606_124575985_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
ENSMUSG00000028907.8_124572590_124587393_7	chr4	-	934	8	NNC	ENSMUSG00000028907.8	novel	1603	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	515.414317192826	862	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGTAATCATGACT	NA	False	NA	NA	False	NA	NA	NA	124587393	124572589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_124572780_124573494_124573606_124575985_124576085_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
ENSMUSG00000028907.8_124572590_124587393_8	chr4	-	936	7	NNC	ENSMUSG00000028907.8	novel	1603	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	547.823192280137	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGTAATCATGACT	NA	False	NA	NA	False	NA	NA	NA	124587393	124572589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_124572780_124573494_124573606_124575985_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124587200
ENSMUSG00000028910.13_131570804_131595097_1	chr4	+	1370	11	NIC	ENSMUSG00000028910.13	novel	1337	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	55.4697214703662	675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCATGCGTGTGGAGGAA	NA	False	NA	33	True	AATAAA	-33	NA	131570803	131595097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_131570990_131581026_131581125_131581895_131582028_131585067_131585212_131588071_131588175_131588487_131588544_131589086_131589190_131590228_131590303_131592367_131592429_131592566_131592640_131594757
ENSMUSG00000028911.17_131627401_131629017_1	chr4	+	1504	2	ISM	ENSMUSG00000028911.17	ENSMUST00000030743.10	3100	6	14882	0	14882	0	3prime_fragment	FALSE	canonical	3	361	junction_1	0	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACCGCGCTTGAATCTA	NA	False	NA	22	True	AATAAA	-22	NA	131627400	131629017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_131627463_131627575
ENSMUSG00000028914.14_141521155_141541653_1	chr4	+	2031	9	FSM	ENSMUSG00000028914.14	ENSMUST00000030747.11	3897	9	232	1634	0	655	multi-exon	FALSE	canonical	3	161	junction_8	15.5060472074607	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTGTATTTAGCCTGTAT	NA	False	NA	3	True	AATAAA	-13	NA	141521154	141541653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_141521298_141523745_141524146_141531131_141531167_141532672_141532850_141533140_141533231_141534425_141534574_141538849_141539030_141539517_141539628_141540905
ENSMUSG00000028914.14_141532741_141541764_1	chr4	+	1496	6	ISM	ENSMUSG00000028914.14	ENSMUST00000030747.11	3897	9	11818	1523	-9328	766	3prime_fragment	FALSE	canonical	3	161	junction_5	12.7027556065603	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGTGACCGAGATAGGAG	NA	False	NA	NA	False	NA	NA	NA	141532740	141541764	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_141532850_141533140_141533231_141534425_141534574_141538849_141539030_141539517_141539628_141540905
ENSMUSG00000028914.14_141542273_141549352_1	chr4	+	747	6	NNC	ENSMUSG00000028914.14	novel	3897	9	NA	NA	204	6065	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	228	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGAATCCTGCAACCCTGA	NA	False	NA	NA	False	NA	NA	NA	141542272	141549352	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_141542367_141545175_141545329_141546292_141546439_141548635_141548773_141549012_141549142_141549264
ENSMUSG00000028914.14_141542273_141549601_1	chr4	+	720	6	NIC	ENSMUSG00000028914.14	novel	3897	9	NA	NA	204	6314	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGCCACCTTCCGGAGGAA	NA	False	NA	NA	False	NA	NA	NA	141542272	141549601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_141542367_141545175_141545329_141546292_141546439_141548635_141548773_141549012_141549142_141549540
ENSMUSG00000028919.12_140978254_140984495_1	chr4	+	969	5	ISM	ENSMUSG00000028919.12	ENSMUST00000006618.9	3414	17	8074	380	4017	-380	3prime_fragment	FALSE	canonical	3	59	junction_1	6.67083203206317	129	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTAGTTGCCAAGAAAGCAA	851	False	NA	7	True	ATTAAA	-18	NA	140978253	140984495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_140978416_140981600_140981760_140982011_140982092_140983614_140983720_140984032
ENSMUSG00000028919.12_140978254_140984875_1	chr4	+	1349	5	ISM	ENSMUSG00000028919.12	ENSMUST00000006618.9	3414	17	8074	0	4017	0	3prime_fragment	FALSE	canonical	3	59	junction_1	6.67083203206317	189	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTAGCATCTGCTTC	851	False	NA	14	True	TTTAAA	-18	NA	140978253	140984875	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_140978416_140981600_140981760_140982011_140982092_140983614_140983720_140984032
ENSMUSG00000028920.10_140875233_140928107_1	chr4	+	2659	10	FSM	ENSMUSG00000028920.10	ENSMUST00000030757.10	5934	10	9	3266	0	-3266	multi-exon	FALSE	canonical	3	178	junction_2	13.4283650402542	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCAGCTGTTGTGGTCTTA	NA	False	NA	5	True	AATAAA	-24	NA	140875232	140928107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_140875491_140895023_140895289_140898134_140898252_140907708_140907844_140920975_140921130_140922491_140922603_140924793_140924891_140925352_140925410_140926240_140926358_140926759
ENSMUSG00000028923.15_140794658_140805653_1	chr4	-	1056	8	FSM	ENSMUSG00000028923.15	ENSMUST00000030760.15	1906	8	15	835	0	0	multi-exon	FALSE	canonical	3	362	junction_3	45.6883855200484	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGCAAGCCCATCGCC	8500	False	NA	-99	True	NA	NA	NA	140805653	140794657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_140794924_140795505_140795591_140797366_140797545_140799839_140799949_140800818_140800901_140800985_140801091_140802270_140802372_140805523
ENSMUSG00000028932.9_21991773_22008785_1	chr5	+	1425	12	ISM	ENSMUSG00000028932.9	ENSMUST00000030769.7	1785	13	1492	0	1492	0	3prime_fragment	FALSE	canonical	3	1482	junction_9	138.585355743117	16875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGCTTCCAGATCTCTG	NA	False	NA	21	True	AATAAA	-17	NA	21991772	22008785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
ENSMUSG00000028932.9_21991773_22008785_2	chr5	+	1405	11	NNC	ENSMUSG00000028932.9	novel	1785	13	NA	NA	1492	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	544.605921745256	16565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGCTTCCAGATCTCTG	NA	False	NA	21	True	AATAAA	-17	NA	21991772	22008785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_21991883_22000742_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
ENSMUSG00000028933.12_25897049_25910771_1	chr5	-	956	3	FSM	ENSMUSG00000028933.12	ENSMUST00000030773.12	3247	3	52	2239	0	0	multi-exon	FALSE	canonical	3	77	junction_1	2.5	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTGGTTTGATTCTAAA	NA	False	NA	NA	False	TTTAAA	-15	NA	25910771	25897048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_25897827_25903248_25903331_25910675
ENSMUSG00000028937.15_152262591_152292296_1	chr4	+	1283	2	ISM	ENSMUSG00000028937.15	ENSMUST00000075363.10	1457	9	0	64013	0	-9957	5prime_fragment	FALSE	canonical	3	360	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	152262590	152292296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_152262798_152291220
ENSMUSG00000028937.15_152274907_152356309_1	chr4	+	1368	9	NNC	ENSMUSG00000028937.15	novel	1457	9	NA	NA	4244	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	160.647906926919	895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCCTAGGTGGTCATTT	695	False	NA	17	True	AATAAA	-22	NA	152274906	152356309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_152275025_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
ENSMUSG00000028944.15_25068586_25113450_1	chr5	-	1351	12	ISM	ENSMUSG00000028944.15	ENSMUST00000076306.12	2838	14	87301	840	0	188	3prime_fragment	FALSE	canonical	3	39	junction_11	38.9905688956947	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTACTACTTTTCATTTCA	NA	False	NA	-4	True	ATTAAA	-19	NA	25113450	25068585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094187_25113320
ENSMUSG00000028944.15_25073753_25113450_1	chr5	-	1333	10	FSM	ENSMUSG00000028944.15	ENSMUST00000150135.8	890	10	57	-500	0	500	multi-exon	FALSE	canonical	3	39	junction_9	41.6092938336297	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCATGTGTGTGTGATCTC	NA	False	NA	NA	False	GATAAA	-13	NA	25113450	25073752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094187_25113320
ENSMUSG00000028945.10_25008246_25047426_1	chr5	-	1163	8	FSM	ENSMUSG00000028945.10	ENSMUST00000030787.9	1784	8	196	425	0	419	multi-exon	FALSE	canonical	3	1533	junction_1	69.8271919433531	8632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGAGCTACTTGGTGT	NA	False	NA	-8	True	AATAAA	-18	NA	25047426	25008245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182
ENSMUSG00000028945.10_25008246_25047607_1	chr5	-	1344	8	FSM	ENSMUSG00000028945.10	ENSMUST00000030787.9	1784	8	15	425	0	419	multi-exon	FALSE	canonical	3	1533	junction_1	69.8271919433531	8627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGAGCTACTTGGTGT	NA	False	NA	-8	True	AATAAA	-18	NA	25047607	25008245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182
ENSMUSG00000028945.10_25008246_25047607_2	chr5	-	987	8	NNC	ENSMUSG00000028945.10	novel	1784	8	NA	NA	0	419	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_7	560.802195110554	4608	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGAGCTACTTGGTGT	NA	False	NA	-8	True	AATAAA	-18	NA	25047607	25008245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047539
ENSMUSG00000028945.10_25008246_25047788_1	chr5	-	1085	8	NNC	ENSMUSG00000028945.10	novel	1784	8	NA	NA	-166	419	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	565.331183412675	4673	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGAGCTACTTGGTGT	NA	False	NA	-8	True	AATAAA	-18	NA	25047788	25008245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047622
ENSMUSG00000028949.14_24797620_24803560_1	chr5	-	1338	12	NNC	ENSMUSG00000028949.14	novel	1735	13	NA	NA	376	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_11	57.2637799648938	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTGTGGTCATTGTG	NA	False	NA	0	True	ATTAAA	-17	NA	24803560	24797619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_24797803_24798014_24798117_24798222_24798346_24798634_24798771_24798919_24799018_24799829_24799992_24800140_24800243_24800387_24800484_24800720_24800844_24800949_24801073_24801804_24801848_24803513
ENSMUSG00000028952.13_152110317_152112121_1	chr4	-	932	3	NIC	ENSMUSG00000028952.13	novel	2312	10	NA	NA	-3	618	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	17	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAGGTGCAGCCGTTCCG	8676	False	NA	NA	False	NA	NA	NA	152112121	152110316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_152110477_152110844_152111517_152112021
ENSMUSG00000028952.13_152110317_152112173_1	chr4	-	877	3	NNC	ENSMUSG00000028952.13	novel	2312	10	NA	NA	-45	618	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	17	112	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAGGTGCAGCCGTTCCG	8624	False	NA	NA	False	NA	NA	NA	152112173	152110316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_152110477_152110844_152111517_152112128
ENSMUSG00000028954.12_24890985_24914211_1	chr5	+	1928	15	FSM	ENSMUSG00000028954.12	ENSMUST00000197407.5	3546	15	455	1163	0	-1163	multi-exon	FALSE	canonical	3	299	junction_1	111.175284472544	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGAATGCTTCTTTGCG	NA	False	NA	20	True	TATAAA	-16	NA	24890984	24914211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_24891021_24894390_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
ENSMUSG00000028954.12_24890985_24914211_2	chr5	+	1941	15	FSM	ENSMUSG00000028954.12	ENSMUST00000068825.8	3269	15	163	1165	0	-1163	multi-exon	FALSE	canonical	3	384	junction_1	91.6660977100463	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGAATGCTTCTTTGCG	NA	False	NA	20	True	TATAAA	-16	NA	24890984	24914211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_24891021_24894377_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
ENSMUSG00000028954.12_24890985_24914869_1	chr5	+	2599	15	FSM	ENSMUSG00000028954.12	ENSMUST00000068825.8	3269	15	163	507	0	-505	multi-exon	FALSE	canonical	3	384	junction_1	91.6660977100463	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACAGCAAGTTATTTTTAA	NA	False	NA	13	True	ATTAAA	-22	NA	24890984	24914869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_24891021_24894377_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
ENSMUSG00000028954.12_24890985_24914869_2	chr5	+	2586	15	FSM	ENSMUSG00000028954.12	ENSMUST00000197407.5	3546	15	455	505	0	-505	multi-exon	FALSE	canonical	3	299	junction_1	111.175284472544	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACAGCAAGTTATTTTTAA	NA	False	NA	13	True	ATTAAA	-22	NA	24890984	24914869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_24891021_24894390_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
ENSMUSG00000028955.4_151133341_151142403_1	chr4	-	529	5	FSM	ENSMUSG00000028955.4	ENSMUST00000030797.4	2120	5	7	1584	0	1525	multi-exon	FALSE	canonical	3	150	junction_4	30.2685893295343	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCTTTGTTTTTCATAT	NA	False	NA	NA	False	NA	NA	NA	151142403	151133340	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_151133504_151134451_151134504_151135373_151135533_151140618_151140701_151142330
ENSMUSG00000028959.15_24646037_24650195_1	chr5	-	1820	10	NIC	ENSMUSG00000028959.15	novel	1893	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_5	369.485762100601	937	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	False	NA	-4	True	NA	NA	NA	24650195	24646036	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647099_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
ENSMUSG00000028959.15_24646037_24650195_2	chr5	-	1808	10	NNC	ENSMUSG00000028959.15	novel	1893	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	25	junction_3	378.672861190856	974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	False	NA	-4	True	NA	NA	NA	24650195	24646036	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_24646260_24646333_24646449_24646525_24646662_24646724_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
ENSMUSG00000028959.15_24646037_24650195_3	chr5	-	1893	10	NIC	ENSMUSG00000028959.15	novel	1893	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	14	junction_9	388.340279702616	964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	False	NA	-4	True	NA	NA	NA	24650195	24646036	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649394_24650063
ENSMUSG00000028960.21_149482957_149510867_1	chr4	-	815	2	FSM	ENSMUSG00000028960.21	ENSMUST00000173005.2	621	2	-194	0	190	0	multi-exon	FALSE	canonical	3	264	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTGTCTTGCTTCTGTC	NA	False	NA	NA	False	ATTAAA	-30	NA	149510867	149482956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_149483243_149510338
ENSMUSG00000028960.21_149482957_149511088_1	chr4	-	1036	2	FSM	ENSMUSG00000028960.21	ENSMUST00000173005.2	621	2	-415	0	0	0	multi-exon	FALSE	canonical	3	264	junction_1	0	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTGTCTTGCTTCTGTC	NA	False	NA	NA	False	ATTAAA	-30	NA	149511088	149482956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_149483243_149510338
ENSMUSG00000028961.16_149234448_149251122_1	chr4	-	2153	14	NNC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	-5	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	112.541379635126	2749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTCTTTGTTTCTTCTCC	NA	False	NA	-8	True	AATAAA	-16	NA	149251122	149234447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_149234909_149234931_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
ENSMUSG00000028961.16_149234448_149251228_1	chr4	-	2259	14	NNC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	112.541379635126	2769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTCTTTGTTTCTTCTCC	NA	False	NA	-8	True	AATAAA	-16	NA	149251228	149234447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_149234909_149234931_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
ENSMUSG00000028961.16_149240689_149251128_1	chr4	-	1296	8	ISM	ENSMUSG00000028961.16	ENSMUST00000084124.7	2218	13	36	6241	-11	-1040	5prime_fragment	FALSE	canonical	1	98	junction_2	82.2164887380151	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTTATGTAGTAGTCA	NA	False	NA	NA	False	AAGAAA	-15	NA	149251128	149240688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
ENSMUSG00000028964.15_150981590_150994285_1	chr4	-	810	7	FSM	ENSMUSG00000028964.15	ENSMUST00000030805.14	908	7	98	0	0	0	multi-exon	FALSE	canonical	3	5402	junction_3	199.85446093484	57781	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	NA	False	NA	-1	True	AATAAA	-26	NA	150994285	150981589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994239
ENSMUSG00000028964.15_150981590_150994336_1	chr4	-	836	7	NNC	ENSMUSG00000028964.15	novel	908	7	NA	NA	-11	0	intron_retention	FALSE	canonical	3	153	junction_6	2090.71572673092	54009	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	NA	False	NA	-1	True	AATAAA	-26	NA	150994336	150981589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994264
ENSMUSG00000028967.11_150939530_150950989_1	chr4	+	688	4	FSM	ENSMUSG00000028967.11	ENSMUST00000030811.2	3043	4	0	2355	0	-2355	multi-exon	FALSE	canonical	3	303	junction_2	19.3275853524323	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTGTGCGGCTCTGTGTG	3781	False	NA	NA	False	ATTAAA	-18	NA	150939529	150950989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_150939729_150949531_150949727_150949820_150949898_150950772
ENSMUSG00000028967.11_150939655_150950989_1	chr4	+	563	4	FSM	ENSMUSG00000028967.11	ENSMUST00000030811.2	3043	4	125	2355	125	-2355	multi-exon	FALSE	canonical	3	303	junction_2	19.3275853524323	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTGTGCGGCTCTGTGTG	3906	False	NA	NA	False	ATTAAA	-18	NA	150939654	150950989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_150939729_150949531_150949727_150949820_150949898_150950772
ENSMUSG00000028969.11_24623239_24628560_1	chr5	-	2094	12	NNC	ENSMUSG00000028969.11	novel	2059	12	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	52.4982486917657	1610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGGAAGCCAACCATGCC	NA	False	NA	-11	True	TATAAA	-5	NA	24628560	24623238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_24624461_24624597_24624679_24624780_24624834_24625245_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627387_24627495_24627557_24627645_24627714_24627795_24627885_24628446
ENSMUSG00000028969.11_24624183_24628560_1	chr5	-	1135	12	NNC	ENSMUSG00000028969.11	novel	2059	12	NA	NA	-32	191	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	69.1748294164387	590	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGATGATATGGTGGTGG	NA	False	NA	-9	True	CATAAA	-18	NA	24628560	24624182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_24624461_24624597_24624679_24624780_24624834_24625245_24625327_24625490_24625588_24625728_24625804_24625952_24626034_24627329_24627387_24627495_24627557_24627645_24627714_24627795_24627885_24628446
ENSMUSG00000028969.11_24624183_24628560_2	chr5	-	1150	12	NNC	ENSMUSG00000028969.11	novel	2059	12	NA	NA	-32	191	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	52.4982486917657	1542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGATGATATGGTGGTGG	NA	False	NA	-9	True	CATAAA	-18	NA	24628560	24624182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_24624461_24624597_24624679_24624780_24624834_24625245_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627387_24627495_24627557_24627645_24627714_24627795_24627885_24628446
ENSMUSG00000028969.11_24624183_24628560_3	chr5	-	1259	11	NNC	ENSMUSG00000028969.11	novel	2059	12	NA	NA	-32	191	intron_retention	FALSE	canonical	0	0	junction_3	55.0178152965019	1122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGATGATATGGTGGTGG	NA	False	NA	-9	True	CATAAA	-18	NA	24628560	24624182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_24624461_24624597_24624679_24624780_24624834_24625245_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627557_24627645_24627714_24627795_24627885_24628446
ENSMUSG00000028970.10_8848147_8857179_1	chr5	+	1435	4	ISM	ENSMUSG00000028970.10	ENSMUST00000196580.5	690	6	-6	6472	0	-6472	5prime_fragment	FALSE	canonical	3	144	junction_1	3.74165738677394	304	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCTGTGCTAAAAGTTAT	NA	False	NA	NA	False	AATAAA	-17	NA	8848146	8857179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007
ENSMUSG00000028970.10_8848147_8860878_1	chr5	+	747	5	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	-39	55437	0	-2773	5prime_fragment	FALSE	canonical	3	110	junction_4	17.1955662890176	214	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGGTTACCTTGGGGAA	NA	False	NA	NA	False	AATAAA	-18	NA	8848146	8860878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8860557
ENSMUSG00000028970.10_8899175_8916315_1	chr5	+	1753	6	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	50989	0	-158	0	3prime_fragment	FALSE	canonical	3	175	junction_1	34.1912269449343	290	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	5226	False	NA	10	True	ATTAAA	-17	NA	8899174	8916315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
ENSMUSG00000028970.10_8901126_8916315_1	chr5	+	1420	6	NNC	ENSMUSG00000028970.10	novel	613	4	NA	NA	-261	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	91.0173609812985	163	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	7177	False	NA	10	True	ATTAAA	-17	NA	8901125	8916315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_8901271_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
ENSMUSG00000028974.14_149188603_149202588_1	chr4	+	1096	5	FSM	ENSMUSG00000028974.14	ENSMUST00000103216.10	1835	5	0	739	0	-739	multi-exon	FALSE	canonical	3	30	junction_2	2.34520787991171	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAACTTTCTCTGTAGAC	NA	False	NA	NA	False	AATATA	-44	NA	149188602	149202588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228
ENSMUSG00000028975.17_149031946_149184277_1	chr4	-	1495	11	Fusion	ENSMUSG00000028975.17_ENSMUSG00000086606.2	novel	2006	9	NA	NA	-4	3	multi-exon	FALSE	canonical	3	45	junction_1	151.923796687682	67	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTCGTTGTGGACAAAAC	NA	False	NA	-1	True	AATAAA	-17	NA	149184277	149031945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_-_149032363_149033223_149033365_149046004_149046252_149047898_149047991_149050678_149050777_149051980_149052084_149055006_149055093_149068493_149068623_149126177_149126263_149160476_149160525_149184228
ENSMUSG00000028986.13_24305604_24343319_1	chr5	+	783	6	ISM	ENSMUSG00000028986.13	ENSMUST00000200116.5	3086	12	0	22463	0	2318	5prime_fragment	FALSE	canonical	3	50	junction_4	5.70613704707484	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTGGTTGAAATATGAT	NA	False	NA	NA	False	NA	NA	NA	24305603	24343319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_24305873_24331819_24331923_24332666_24332761_24332977_24333103_24339961_24340138_24343303
ENSMUSG00000028990.14_149569697_149581125_1	chr4	+	1283	8	NIC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	61.9861735735133	823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569696	149581125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_149569731_149570318_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
ENSMUSG00000028998.7_24044704_24049159_1	chr5	-	363	3	FSM	ENSMUSG00000028998.7	ENSMUST00000030851.7	1125	3	0	762	0	-762	multi-exon	FALSE	canonical	3	3790	junction_2	61.5	9714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCCTATACTGATTTATGA	NA	False	NA	-83	True	AAGAAA	-38	NA	24049159	24044703	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_24044827_24046707_24046757_24048968
ENSMUSG00000029001.16_148237257_148244368_1	chr4	-	1660	6	FSM	ENSMUSG00000029001.16	ENSMUST00000057907.10	1829	6	172	-3	-34	0	multi-exon	FALSE	canonical	3	37	junction_4	3.00665927567458	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGCCCTGCGGCTTTTGG	NA	False	NA	-3	True	AATAAA	-16	NA	148244368	148237256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_148238102_148240602_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148244199
ENSMUSG00000029003.12_148224954_148230156_1	chr4	+	1198	8	FSM	ENSMUSG00000029003.12	ENSMUST00000105707.2	949	8	-246	-3	-227	0	multi-exon	FALSE	canonical	3	65	junction_6	213.795439137317	1711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGAACATGTGTATCG	NA	False	NA	30	True	AATAAA	-38	NA	148224953	148230156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229582_148229654_148229828
ENSMUSG00000029003.12_148224954_148230156_2	chr4	+	1119	7	NIC	ENSMUSG00000029003.12	novel	1535	8	NA	NA	-227	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_3	247.779079468429	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGAACATGTGTATCG	NA	False	NA	30	True	AATAAA	-38	NA	148224953	148230156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_148225292_148225371_148225491_148227442_148227515_148228720_148228816_148229110_148229185_148229560_148229654_148229828
ENSMUSG00000029003.12_148225181_148230156_1	chr4	+	1007	8	NNC	ENSMUSG00000029003.12	novel	1535	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	230.440217578336	1640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGAACATGTGTATCG	NA	False	NA	30	True	AATAAA	-38	NA	148225180	148230156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229096_148229185_148229560_148229654_148229828
ENSMUSG00000029003.12_148225181_148230156_2	chr4	+	892	7	NIC	ENSMUSG00000029003.12	novel	1535	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_3	247.779079468429	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGAACATGTGTATCG	NA	False	NA	30	True	AATAAA	-38	NA	148225180	148230156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_148225292_148225371_148225491_148227442_148227515_148228720_148228816_148229110_148229185_148229560_148229654_148229828
ENSMUSG00000029003.12_148225181_148230156_3	chr4	+	993	8	FSM	ENSMUSG00000029003.12	ENSMUST00000030860.9	1535	8	542	0	0	0	multi-exon	FALSE	canonical	3	623	junction_4	29.3730405338651	2232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGAACATGTGTATCG	NA	False	NA	30	True	AATAAA	-38	NA	148225180	148230156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229560_148229654_148229828
ENSMUSG00000029003.12_148225181_148230156_4	chr4	+	987	8	NNC	ENSMUSG00000029003.12	novel	1535	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	233.295468259039	1555	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGAACATGTGTATCG	NA	False	NA	30	True	AATAAA	-38	NA	148225180	148230156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229560_148229654_148229834
ENSMUSG00000029004.16_23639447_23690459_1	chr5	+	1922	13	ISM	ENSMUSG00000029004.16	ENSMUST00000094962.9	7252	26	8	18774	0	10	5prime_fragment	FALSE	canonical	3	18	junction_10	3.30298686376774	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAAAAAGAGAAAGATAC	NA	False	NA	NA	False	AAAACA	-33	NA	23639446	23690459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_23639782_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23681483_23681523_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344
ENSMUSG00000029007.9_148164371_148172488_1	chr4	-	1143	5	FSM	ENSMUSG00000029007.9	ENSMUST00000030865.9	3996	5	0	2853	0	603	multi-exon	FALSE	canonical	3	1081	junction_4	44.285296657017	10120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCTGTCTTGGTATGAT	NA	False	NA	-18	True	NA	NA	NA	148172488	148164370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172373
ENSMUSG00000029007.9_148164730_148172488_1	chr4	-	784	5	FSM	ENSMUSG00000029007.9	ENSMUST00000030865.9	3996	5	0	3212	0	244	multi-exon	FALSE	canonical	3	1081	junction_4	44.285296657017	6079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGAGCTGTGGTTGGTTT	NA	False	NA	-6	True	NA	NA	NA	148172488	148164729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172373
ENSMUSG00000029007.9_148164974_148172488_1	chr4	-	540	5	FSM	ENSMUSG00000029007.9	ENSMUST00000030865.9	3996	5	0	3456	0	0	multi-exon	FALSE	canonical	3	1081	junction_4	44.285296657017	765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACAAGGGCCAAGCTGTCC	NA	False	NA	NA	False	NA	NA	NA	148172488	148164973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172373
ENSMUSG00000029012.12_22691483_22755373_1	chr5	-	2013	14	NIC	ENSMUSG00000029012.12	novel	2103	14	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	46	junction_12	150.475380832502	1015	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGTTCTTTGGTTCTG	NA	False	NA	-3	True	AATAAA	-18	NA	22755373	22691482	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751503_22752921_22753015_22755189
ENSMUSG00000029014.15_21962280_21981813_1	chr5	-	1583	14	NNC	ENSMUSG00000029014.15	novel	1994	17	NA	NA	-8148	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	286.879889511128	1196	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATTTTCACTTGGAATT	NA	False	NA	-12	True	AATAAA	-15	NA	21981813	21962279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971699_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714
ENSMUSG00000029014.15_21962280_21981813_2	chr5	-	1581	14	NNC	ENSMUSG00000029014.15	novel	1994	17	NA	NA	-8148	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	282.654492499549	1455	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATTTTCACTTGGAATT	NA	False	NA	-12	True	AATAAA	-15	NA	21981813	21962279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968507_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714
ENSMUSG00000029014.15_21962280_21981813_3	chr5	-	1588	14	ISM	ENSMUSG00000029014.15	ENSMUST00000115195.8	1994	17	8401	0	-8148	0	3prime_fragment	FALSE	canonical	3	849	junction_11	101.645281806926	2317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATTTTCACTTGGAATT	NA	False	NA	-12	True	AATAAA	-15	NA	21981813	21962279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714
ENSMUSG00000029014.15_21978520_21981813_1	chr5	-	578	3	ISM	ENSMUSG00000029014.15	ENSMUST00000147987.2	1011	6	8339	0	-8148	0	3prime_fragment	FALSE	canonical	3	855	junction_1	65	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCATTGAGCCATCTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	21981813	21978519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_21978857_21979931_21980074_21981714
ENSMUSG00000029017.14_21942139_21962146_1	chr5	+	1599	13	NNC	ENSMUSG00000029017.14	novel	1615	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	108.274599463073	2131	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCGTTAGTCTGTTAT	NA	False	NA	12	True	AATAAA	-14	NA	21942138	21962146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_21942275_21943866_21944008_21945037_21945125_21945494_21945613_21947755_21947955_21948376_21948457_21950975_21951089_21951975_21952120_21953746_21953908_21961399_21961486_21961584_21961674_21961812_21961889_21961977
ENSMUSG00000029017.14_21942139_21962146_2	chr5	+	1605	13	NNC	ENSMUSG00000029017.14	novel	1615	13	NA	NA	0	2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	107.9764313275	2148	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCGTTAGTCTGTTAT	NA	False	NA	12	True	AATAAA	-14	NA	21942138	21962146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_21942275_21943866_21944008_21945037_21945125_21945482_21945613_21947761_21947955_21948376_21948457_21950975_21951089_21951975_21952120_21953746_21953908_21961399_21961486_21961584_21961674_21961812_21961889_21961977
ENSMUSG00000029019.9_148070357_148071662_1	chr4	+	669	3	FSM	ENSMUSG00000029019.9	ENSMUST00000103231.5	781	3	112	0	112	0	multi-exon	FALSE	canonical	3	7	junction_1	1	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTCCGTGAGTTTCAA	NA	False	NA	NA	False	AATAAA	-30	NA	148070356	148071662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_148070559_148070752_148070976_148071418
ENSMUSG00000029022.19_147945243_147952940_1	chr4	-	1841	11	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_10	96.0689856301189	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCCATGTAAGCCTCTC	NA	False	NA	-7	True	AATAAA	-21	NA	147952940	147945242	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147951787_147952060_147952825
ENSMUSG00000029028.15_154104409_154105970_1	chr4	+	1533	2	NNC	ENSMUSG00000029028.15	novel	3468	7	NA	NA	313	0	at_least_one_novel_splicesite	TRUE	non_canonical	2	132	junction_1	0	231	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGCATCAGCAGCCTTA	NA	False	NA	16	True	AATAAA	-18	NA	154104408	154105970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_154104673_154104701
ENSMUSG00000029034.10_155954024_155973326_1	chr4	+	1860	16	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	0	136	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	247.894457828775	230	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTTATTCCTACTCTC	9981	False	NA	32	True	AATAAA	-20	NA	155954023	155973326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971941_155972363_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
ENSMUSG00000029034.10_155973319_155976183_1	chr4	+	1247	8	NIC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	739	2623	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCACGTGGCCCGCGGTCG	NA	False	NA	NA	False	NA	NA	NA	155973318	155976183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976028
ENSMUSG00000029034.10_155973319_155976183_2	chr4	+	1963	7	NIC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	739	2623	intron_retention	FALSE	non_canonical	0	0	junction_1	0	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCACGTGGCCCGCGGTCG	NA	False	NA	NA	False	NA	NA	NA	155973318	155976183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_155973626_155973890_155974054_155974125_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
ENSMUSG00000029034.10_155973319_155976183_3	chr4	+	1650	8	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	739	2623	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCACGTGGCCCGCGGTCG	NA	False	NA	NA	False	NA	NA	NA	155973318	155976183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_155973626_155973890_155974054_155974125_155974643_155974955_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
ENSMUSG00000029034.10_155973319_155976183_4	chr4	+	1403	7	NIC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	739	2623	intron_retention	FALSE	non_canonical	0	0	junction_1	0	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCACGTGGCCCGCGGTCG	NA	False	NA	NA	False	NA	NA	NA	155973318	155976183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975697_155975814
ENSMUSG00000029034.10_155973319_155976183_5	chr4	+	1165	8	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	739	2623	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	295	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCACGTGGCCCGCGGTCG	NA	False	NA	NA	False	NA	NA	NA	155973318	155976183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975232_155975360_155975508_155975697_155975814_155975873_155976087
ENSMUSG00000029036.19_155825098_155834675_1	chr4	-	1199	6	ISM	ENSMUSG00000029036.19	ENSMUST00000030903.12	2413	16	10875	0	-875	0	3prime_fragment	FALSE	canonical	3	684	junction_5	67.8132730370685	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGCTTGATGGCTGAGG	6424	False	NA	-9	True	AATAAA	-19	NA	155834675	155825097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833199_155833613_155833666_155834588
ENSMUSG00000029038.10_155789581_155818336_1	chr4	+	1148	5	FSM	ENSMUSG00000029038.10	ENSMUST00000030905.9	1472	5	324	0	0	0	multi-exon	FALSE	canonical	3	1510	junction_4	100.903419169025	5571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGAATTGCCACAAAAT	NA	False	NA	117	True	AATAAA	-33	NA	155789580	155818336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383_155816503_155817929
ENSMUSG00000029038.10_155789858_155816646_1	chr4	+	608	4	FSM	ENSMUSG00000029038.10	ENSMUST00000105595.2	874	4	266	0	266	0	multi-exon	FALSE	canonical	3	1675	junction_1	40.2685430026411	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGACCAAATGCTTTGGCT	NA	False	NA	NA	False	AGTAAA	-26	NA	155789857	155816646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383
ENSMUSG00000029048.4_155158840_155170828_1	chr4	-	1530	8	FSM	ENSMUSG00000029048.4	ENSMUST00000149796.2	1803	8	0	273	0	-273	multi-exon	FALSE	canonical	3	234	junction_7	582.015218259552	1709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTGAGACTATTTTGAC	NA	False	NA	-33	True	TATAAA	-18	NA	155170828	155158839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167775_155170661
ENSMUSG00000029048.4_155158840_155170828_2	chr4	-	1036	7	NNC	ENSMUSG00000029048.4	novel	1803	8	NA	NA	0	-273	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	583.385450052822	224	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTGAGACTATTTTGAC	NA	False	NA	-33	True	TATAAA	-18	NA	155170828	155158839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_155159201_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155170661
ENSMUSG00000029048.4_155158840_155170828_3	chr4	-	1313	7	NNC	ENSMUSG00000029048.4	novel	1803	8	NA	NA	0	-273	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_2	577.796580890618	4099	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTGAGACTATTTTGAC	NA	False	NA	-33	True	TATAAA	-18	NA	155170828	155158839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_155159486_155160045_155160174_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155170661
ENSMUSG00000029048.4_155158840_155170828_4	chr4	-	1449	8	NIC	ENSMUSG00000029048.4	novel	1803	8	NA	NA	0	-273	combination_of_known_junctions	FALSE	canonical	3	91	junction_7	617.350990035619	2389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTGAGACTATTTTGAC	NA	False	NA	-33	True	TATAAA	-18	NA	155170828	155158839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167694_155170661
ENSMUSG00000029048.4_155159222_155170828_1	chr4	-	1148	8	FSM	ENSMUSG00000029048.4	ENSMUST00000149796.2	1803	8	0	655	0	-655	multi-exon	FALSE	canonical	3	234	junction_7	582.015218259552	943	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCATTGATTTCTTTTTCA	NA	False	NA	0	True	AAGAAA	-18	NA	155170828	155159221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167775_155170661
ENSMUSG00000029048.4_155159222_155170828_2	chr4	-	931	7	NNC	ENSMUSG00000029048.4	novel	1803	8	NA	NA	0	-655	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_2	577.796580890618	3052	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCATTGATTTCTTTTTCA	NA	False	NA	0	True	AAGAAA	-18	NA	155170828	155159221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_155159486_155160045_155160174_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155170661
ENSMUSG00000029048.4_155159222_155170828_3	chr4	-	1067	8	NIC	ENSMUSG00000029048.4	novel	1803	8	NA	NA	0	-655	combination_of_known_junctions	FALSE	canonical	3	91	junction_7	617.350990035619	1057	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCATTGATTTCTTTTTCA	NA	False	NA	0	True	AAGAAA	-18	NA	155170828	155159221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167694_155170661
ENSMUSG00000029048.4_155159308_155170828_1	chr4	-	845	7	NNC	ENSMUSG00000029048.4	novel	1803	8	NA	NA	0	-741	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_2	577.796580890618	1719	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTGAATTTTCTTTTT	NA	False	NA	-20	True	CATAAA	-15	NA	155170828	155159307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_155159486_155160045_155160174_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155170661
ENSMUSG00000029048.4_155159308_155170828_2	chr4	-	981	8	NIC	ENSMUSG00000029048.4	novel	1803	8	NA	NA	0	-741	combination_of_known_junctions	FALSE	canonical	3	91	junction_7	617.350990035619	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTGAATTTTCTTTTT	NA	False	NA	-20	True	CATAAA	-15	NA	155170828	155159307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167694_155170661
ENSMUSG00000029048.4_155159308_155170828_3	chr4	-	1062	8	FSM	ENSMUSG00000029048.4	ENSMUST00000149796.2	1803	8	0	741	0	-741	multi-exon	FALSE	canonical	3	234	junction_7	582.015218259552	712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTGAATTTTCTTTTT	NA	False	NA	-20	True	CATAAA	-15	NA	155170828	155159307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167775_155170661
ENSMUSG00000029053.17_155439077_155445852_1	chr4	-	541	4	ISM	ENSMUSG00000029053.17	ENSMUST00000030922.15	2641	18	-34	92899	-34	1514	5prime_fragment	FALSE	canonical	3	200	junction_1	19.2584757675391	421	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTATGTATATGAGTGTTT	NA	False	NA	-8	True	ATTAAA	-18	NA	155445852	155439076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_155439162_155440883_155440974_155441937_155442060_155445608
ENSMUSG00000029053.17_155439077_155445852_3	chr4	-	515	4	NNC	ENSMUSG00000029053.17	novel	2641	18	NA	NA	-34	1514	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	102.920681433163	314	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTATGTATATGAGTGTTT	NA	False	NA	-8	True	ATTAAA	-18	NA	155445852	155439076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_155439162_155440883_155440948_155441937_155442060_155445608
ENSMUSG00000029059.10_154980856_154983522_1	chr4	-	829	7	NNC	ENSMUSG00000029059.10	novel	883	7	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	29.6235641939918	652	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCGTCCTTCCCACAGCA	NA	False	NA	-6	True	ATTAAA	-45	NA	154983522	154980855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_154981055_154981496_154981616_154981805_154981882_154981962_154982018_154982584_154982637_154982932_154983138_154983399
ENSMUSG00000029060.18_155738927_155739772_1	chr4	-	654	3	ISM	ENSMUSG00000029060.18	ENSMUST00000139788.8	1558	6	1412	-213	1412	207	3prime_fragment	FALSE	canonical	3	377	junction_2	1.5	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCACGTGGCTTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	155739772	155738926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_155739451_155739561_155739628_155739708
ENSMUSG00000029060.18_155739139_155739772_1	chr4	-	442	3	ISM	ENSMUSG00000029060.18	ENSMUST00000139788.8	1558	6	1412	-1	1412	0	3prime_fragment	FALSE	canonical	3	377	junction_2	1.5	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTTCCTGTTCCTTGC	NA	False	NA	-5	True	TATAAA	-13	NA	155739772	155739138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_155739451_155739561_155739628_155739708
ENSMUSG00000029060.18_155739139_155739772_2	chr4	-	436	3	NNC	ENSMUSG00000029060.18	novel	3282	17	NA	NA	1412	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	190	120	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTTCCTGTTCCTTGC	NA	False	NA	-5	True	TATAAA	-13	NA	155739772	155739138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_155739451_155739561_155739628_155739714
ENSMUSG00000029062.15_155709340_155724322_1	chr4	+	1011	9	ISM	ENSMUSG00000029062.15	ENSMUST00000067081.10	2595	20	14	10073	0	42	5prime_fragment	FALSE	canonical	3	247	junction_2	65.3567135036639	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGGAAGAAGAAGAGGA	3976	False	NA	27	True	NA	NA	NA	155709339	155724322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_155709399_155709987_155710112_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233
ENSMUSG00000029062.15_155733257_155734395_1	chr4	+	620	4	ISM	ENSMUSG00000029062.15	ENSMUST00000105598.2	2673	20	23890	0	1432	0	3prime_fragment	FALSE	canonical	3	475	junction_1	43.2768863123133	2226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	4909	False	NA	23	True	ATTAAA	-28	NA	155733256	155734395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_155733291_155733468_155733618_155733878_155734069_155734148
ENSMUSG00000029062.15_155733907_155734395_1	chr4	+	409	2	ISM	ENSMUSG00000029062.15	ENSMUST00000105598.2	2673	20	24540	0	2082	0	3prime_fragment	FALSE	canonical	3	573	junction_1	0	2015	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	5559	False	NA	23	True	ATTAAA	-28	NA	155733906	155734395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_155734069_155734148
ENSMUSG00000029063.17_155648283_155674319_1	chr4	+	1887	12	FSM	ENSMUSG00000029063.17	ENSMUST00000105613.10	3152	12	126	1139	0	242	multi-exon	FALSE	canonical	3	675	junction_7	32.1412173266612	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTTTTAACTGCAGTGC	9698	False	NA	16	True	AATAAA	-16	NA	155648282	155674319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
ENSMUSG00000029063.17_155648283_155675454_1	chr4	+	3022	12	FSM	ENSMUSG00000029063.17	ENSMUST00000105613.10	3152	12	126	4	0	0	multi-exon	FALSE	canonical	3	675	junction_7	32.1412173266612	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGTTAAGTAACAGCTTT	9698	False	NA	34	True	AATAAA	-20	NA	155648282	155675454	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
ENSMUSG00000029064.16_155639584_155642275_1	chr4	+	572	3	ISM	ENSMUSG00000029064.16	ENSMUST00000176637.2	2832	10	27674	1449	1903	165	3prime_fragment	FALSE	canonical	3	731	junction_2	1449.5	144	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGAGTGTGATTGTGAGA	999	False	NA	10	True	AATAAA	-20	NA	155639583	155642275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_155639689_155641627_155641744_155641924
ENSMUSG00000029064.16_155641654_155642273_1	chr4	+	436	2	ISM	ENSMUSG00000029064.16	ENSMUST00000176308.2	812	4	3973	-163	3973	163	3prime_fragment	FALSE	canonical	3	3030	junction_1	0	109	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTGAGTGTGATTGTGA	3069	False	NA	8	True	AATAAA	-18	NA	155641653	155642273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_155641744_155641927
ENSMUSG00000029066.13_155887335_155893288_1	chr4	+	1130	5	NIC	ENSMUSG00000029066.13	novel	764	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	558.135064298956	8664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGAGTTATTTCCTGGC	NA	False	NA	22	True	AATAAA	-18	NA	155887334	155893288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_155887553_155887829_155888200_155888289_155888401_155891364_155891443_155892935
ENSMUSG00000029070.10_155925896_155928551_1	chr4	+	1726	7	ISM	ENSMUSG00000029070.10	ENSMUST00000030947.4	2203	10	1713	-6	-865	6	3prime_fragment	FALSE	canonical	3	23	junction_2	4.10960933531265	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTGGACCTGCTGCTCTC	NA	False	NA	18	True	AATAAA	-19	NA	155925895	155928551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_155926004_155926118_155926590_155927013_155927173_155927249_155927290_155927361_155927439_155927515_155927597_155927761
ENSMUSG00000029073.10_155949753_155953897_1	chr4	-	2089	3	FSM	ENSMUSG00000029073.10	ENSMUST00000030950.8	2662	3	0	573	0	0	multi-exon	FALSE	canonical	3	76	junction_1	2.5	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTATACCTACATGATTG	NA	False	NA	-43	True	NA	NA	NA	155953897	155949752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_155951343_155951569_155951795_155953623
ENSMUSG00000029076.15_156077368_156094667_1	chr4	+	1777	7	FSM	ENSMUSG00000029076.15	ENSMUST00000050078.13	5177	7	0	3400	0	0	multi-exon	FALSE	canonical	3	674	junction_3	38.3521692853076	2249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCCTCTCCAGCATGTG	NA	False	NA	28	True	ATTAAA	-19	NA	156077367	156094667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
ENSMUSG00000029076.15_156077627_156094667_1	chr4	+	1513	7	NNC	ENSMUSG00000029076.15	novel	1670	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	272.346847889884	1747	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCCTCTCCAGCATGTG	NA	False	NA	28	True	ATTAAA	-19	NA	156077626	156094667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093248_156093403_156093600_156093777_156094230
ENSMUSG00000029076.15_156077627_156094667_2	chr4	+	1518	7	FSM	ENSMUSG00000029076.15	ENSMUST00000050078.13	5177	7	259	3400	0	0	multi-exon	FALSE	canonical	3	674	junction_3	38.3521692853076	2027	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCCTCTCCAGCATGTG	NA	False	NA	28	True	ATTAAA	-19	NA	156077626	156094667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
ENSMUSG00000029082.18_43978844_43999752_1	chr5	+	1058	7	ISM	ENSMUSG00000029082.18	ENSMUST00000101237.8	2856	9	2611	1576	0	0	3prime_fragment	FALSE	canonical	3	10	junction_4	3.3870669054836	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCTGTATTTTTTATTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	43978843	43999752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_43979088_43979608_43979692_43982669_43982747_43983605_43983699_43994802_43994890_43997772_43997833_43999338
ENSMUSG00000029084.6_44026202_44067877_1	chr5	+	1123	8	FSM	ENSMUSG00000029084.6	ENSMUST00000030964.6	3270	8	307	1840	0	-1840	multi-exon	FALSE	canonical	3	162	junction_4	17.0353773551587	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTGTTATATTAGTCTA	NA	False	NA	NA	False	CATAAA	-16	NA	44026201	44067877	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_44026463_44057674_44057805_44058762_44058899_44060936_44061023_44063505_44063580_44064854_44064948_44065264_44065352_44067621
ENSMUSG00000029084.6_44026202_44068003_1	chr5	+	1249	8	FSM	ENSMUSG00000029084.6	ENSMUST00000030964.6	3270	8	307	1714	0	-1714	multi-exon	FALSE	canonical	3	162	junction_4	17.0353773551587	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAGGCTGAGAATCCAAC	NA	False	NA	NA	False	NA	NA	NA	44026201	44068003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_44026463_44057674_44057805_44058762_44058899_44060936_44061023_44063505_44063580_44064854_44064948_44065264_44065352_44067621
ENSMUSG00000029084.6_44026202_44069520_1	chr5	+	2766	8	FSM	ENSMUSG00000029084.6	ENSMUST00000030964.6	3270	8	307	197	0	-197	multi-exon	FALSE	canonical	3	162	junction_4	17.0353773551587	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAAAGTATTTGCTTGGT	NA	False	NA	10	True	AATAAA	-15	NA	44026201	44069520	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_44026463_44057674_44057805_44058762_44058899_44060936_44061023_44063505_44063580_44064854_44064948_44065264_44065352_44067621
ENSMUSG00000029089.9_48529671_48545695_1	chr5	+	1033	8	FSM	ENSMUSG00000029089.9	ENSMUST00000200566.5	1422	8	-104	493	0	-203	multi-exon	FALSE	canonical	3	22	junction_4	26.2717354134182	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGAGTGCTGTAGGGGTT	NA	False	NA	NA	False	ATTAAA	-17	NA	48529670	48545695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48536671_48536807_48537465_48537574_48539128_48539210_48545444
ENSMUSG00000029089.9_48529671_48545695_2	chr5	+	1124	9	FSM	ENSMUSG00000029089.9	ENSMUST00000030968.7	1616	9	0	492	0	-203	multi-exon	FALSE	canonical	3	77	junction_5	8.92941067484299	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGAGTGCTGTAGGGGTT	NA	False	NA	NA	False	ATTAAA	-17	NA	48529670	48545695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48534416_48534508_48536671_48536807_48537465_48537574_48539128_48539210_48545444
ENSMUSG00000029089.9_48529671_48545898_1	chr5	+	1327	9	FSM	ENSMUSG00000029089.9	ENSMUST00000030968.7	1616	9	0	289	0	0	multi-exon	FALSE	canonical	3	77	junction_5	8.92941067484299	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGAAATGTGTATTTTAT	NA	False	NA	NA	False	AGTAAA	-28	NA	48529670	48545898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48534416_48534508_48536671_48536807_48537465_48537574_48539128_48539210_48545444
ENSMUSG00000029090.13_50117298_50119047_1	chr5	-	1617	2	ISM	ENSMUSG00000029090.13	ENSMUST00000030971.7	4480	19	97301	0	10370	0	3prime_fragment	FALSE	canonical	3	448	junction_1	0	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATTGTGCTGGTGGCTT	NA	False	NA	-10	True	AATAAA	-14	NA	50119047	50117297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_50118857_50118989
ENSMUSG00000029097.12_35714550_35732414_1	chr5	-	2787	11	FSM	ENSMUSG00000029097.12	ENSMUST00000030980.12	3790	11	0	1003	0	-1003	multi-exon	FALSE	canonical	3	72	junction_3	7.3	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGGGCTTCACAGCATC	7626	False	NA	-3	True	AATAAA	-18	NA	35732414	35714549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730267_35731423_35731539_35731902
ENSMUSG00000029097.12_35714677_35732414_1	chr5	-	2660	11	FSM	ENSMUSG00000029097.12	ENSMUST00000030980.12	3790	11	0	1130	0	-1130	multi-exon	FALSE	canonical	3	72	junction_3	7.3	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGCACTCACTACATCTGA	7626	False	NA	-19	True	TTTAAA	-25	NA	35732414	35714676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730267_35731423_35731539_35731902
ENSMUSG00000029097.12_35715148_35732414_1	chr5	-	2189	11	FSM	ENSMUSG00000029097.12	ENSMUST00000030980.12	3790	11	0	1601	0	-1601	multi-exon	FALSE	canonical	3	72	junction_3	7.3	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTGGTTTCCCTTGTCC	7626	False	NA	-2	True	NA	NA	NA	35732414	35715147	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730267_35731423_35731539_35731902
ENSMUSG00000029103.17_35250413_35263043_1	chr5	-	1346	8	FSM	ENSMUSG00000029103.17	ENSMUST00000030986.15	2981	8	67	1568	-3	0	multi-exon	FALSE	canonical	3	809	junction_2	73.9092107153867	1445	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCACAACAGTTTATATTG	NA	False	NA	-55	True	NA	NA	NA	35263043	35250412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_35250731_35252193_35252371_35253319_35253403_35254874_35255034_35255496_35255618_35256500_35256623_35259738_35259884_35262822
ENSMUSG00000029110.14_34493768_34508833_1	chr5	+	906	7	NNC	ENSMUSG00000029110.14	novel	2895	8	NA	NA	0	962	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	981.947667761486	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGATGTAAACTGGTCT	NA	False	NA	NA	False	AAAAAG	-16	NA	34493767	34508833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_34493829_34499865_34500024_34504118_34504246_34506007_34506100_34507255_34507416_34508133_34508183_34508574
ENSMUSG00000029110.14_34493768_34510780_2	chr5	+	2898	7	NIC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	1293	junction_4	355.934919144872	1154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	25	True	AATAAA	-15	NA	34493767	34510780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506088_34507255_34507416_34508133_34508183_34508574
ENSMUSG00000029110.14_34493768_34510780_3	chr5	+	1092	2	NNC	ENSMUSG00000029110.14	novel	928	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	83	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	25	True	AATAAA	-15	NA	34493767	34510780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_34493886_34509806
ENSMUSG00000029110.14_34493768_34510780_4	chr5	+	2853	7	NNC	ENSMUSG00000029110.14	novel	2895	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	981.947667761486	765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	25	True	AATAAA	-15	NA	34493767	34510780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_34493829_34499865_34500024_34504118_34504246_34506007_34506100_34507255_34507416_34508133_34508183_34508574
ENSMUSG00000029111.8_34055260_34093594_1	chr5	-	2417	11	FSM	ENSMUSG00000029111.8	ENSMUST00000030993.8	2580	11	163	0	0	0	multi-exon	FALSE	canonical	3	561	junction_5	32.3241395863834	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTCCACTTTAAATGCT	NA	False	NA	0	True	AATAAA	-29	NA	34093594	34055259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
ENSMUSG00000029111.8_34055519_34093656_1	chr5	-	2285	12	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	-62	-259	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_11	216.940407706512	483	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCACAGAGCTGTGTTTCA	NA	False	NA	-6	True	ATTAAA	-21	NA	34093656	34055518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34085642_34085708_34093369
ENSMUSG00000029111.8_34055519_34093656_2	chr5	-	2220	11	FSM	ENSMUSG00000029111.8	ENSMUST00000030993.8	2580	11	101	259	-62	-259	multi-exon	FALSE	canonical	3	561	junction_5	32.3241395863834	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCACAGAGCTGTGTTTCA	NA	False	NA	-6	True	ATTAAA	-21	NA	34093656	34055518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
ENSMUSG00000029111.8_34055819_34093656_1	chr5	-	1920	11	FSM	ENSMUSG00000029111.8	ENSMUST00000030993.8	2580	11	101	559	-62	-559	multi-exon	FALSE	canonical	3	561	junction_5	32.3241395863834	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAGTGCCTGTTCGACTT	NA	False	NA	NA	False	NA	NA	NA	34093656	34055818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
ENSMUSG00000029119.10_36964265_36968104_1	chr5	-	731	5	NNC	ENSMUSG00000029119.10	novel	3330	19	NA	NA	2203	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	96.5012953280939	147	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCATGTTCAAGCCAGA	NA	False	NA	-13	True	AATAAA	-21	NA	36968104	36964264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36968011
ENSMUSG00000029125.15_38196626_38294163_1	chr5	+	1516	11	FSM	ENSMUSG00000029125.15	ENSMUST00000114126.9	3002	11	540	946	0	2	multi-exon	FALSE	canonical	3	87	junction_9	9.96794863550169	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTGCAGTCAGTGAGTC	NA	False	NA	15	True	AATAAA	-15	NA	38196625	38294163	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_38196844_38249856_38249925_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293606
ENSMUSG00000029128.13_41790282_41865471_1	chr5	-	956	6	ISM	ENSMUSG00000029128.13	ENSMUST00000201422.4	1697	8	-7	7963	-7	-6712	5prime_fragment	FALSE	canonical	3	424	junction_2	49.6733328859661	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTAATGGATTAAGGTTC	NA	False	NA	NA	False	AATAAA	-15	NA	41865471	41790281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
ENSMUSG00000029131.15_29940987_29972101_1	chr5	+	1465	7	NIC	ENSMUSG00000029131.15	novel	1605	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_1	707.616755187596	4082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTCTTGTGTCTGTGTG	4595	False	NA	42	True	AATAAA	-42	NA	29940986	29972101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_29941115_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322
ENSMUSG00000029131.15_29940987_29986705_1	chr5	+	1426	9	ISM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	301	4771	0	0	5prime_fragment	FALSE	canonical	3	694	junction_8	427.836252992894	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTGTATGGAGTATATT	4595	False	NA	NA	False	ATTAAA	-19	NA	29940986	29986705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127
ENSMUSG00000029131.15_29940987_29991373_1	chr5	+	2514	10	FSM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	301	103	0	-103	multi-exon	FALSE	canonical	3	618	junction_9	548.115559591832	1224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGCTCTCTTGTGGTCA	4595	False	NA	4	True	AATAAA	-17	NA	29940986	29991373	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127_29986449_29990028
ENSMUSG00000029141.17_31701127_31711386_1	chr5	+	576	4	FSM	ENSMUSG00000029141.17	ENSMUST00000202299.4	761	4	189	-4	0	0	multi-exon	FALSE	canonical	3	47	junction_1	30.9443945740671	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGTGATGATCATTCCC	1937	False	NA	11	True	AGTAAA	-21	NA	31701126	31711386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31701258_31705954_31706026_31708056_31708127_31711082
ENSMUSG00000029145.13_31344912_31350380_1	chr5	-	1621	13	FSM	ENSMUSG00000029145.13	ENSMUST00000077693.10	2025	13	394	10	-22	0	multi-exon	FALSE	canonical	3	556	junction_3	56.1372326436643	3206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCCATGACTCTGCTGCC	NA	False	NA	-10	True	AATAAA	-14	NA	31350380	31344911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31349970_31350336
ENSMUSG00000029145.13_31349262_31350380_1	chr5	-	455	3	ISM	ENSMUSG00000029145.13	ENSMUST00000200983.4	654	6	103	718	-22	-200	5prime_fragment	FALSE	canonical	1	3	junction_1	283.5	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAGATAAGGTAAAAGGGA	NA	False	NA	NA	False	NA	NA	NA	31350380	31349261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_31349629_31349925_31349970_31350336
ENSMUSG00000029145.13_31349263_31350380_1	chr5	-	751	2	NIC	ENSMUSG00000029145.13	novel	512	5	NA	NA	-22	-201	intron_retention	FALSE	canonical	3	570	junction_1	0	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTAGATAAGGTAAAAGGG	NA	False	NA	NA	False	NA	NA	NA	31350380	31349262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_31349970_31350336
ENSMUSG00000029145.13_31350638_31356244_1	chr5	-	1951	15	NIC	ENSMUSG00000029145.13	novel	2025	13	NA	NA	-5470	-1576	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGAGGTGGGAAGGCTGT	NA	False	NA	NA	False	NA	NA	NA	31356244	31350637	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_31350810_31351212_31351288_31352139_31352258_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
ENSMUSG00000029147.12_31360012_31362434_1	chr5	-	1178	5	ISM	ENSMUSG00000029147.12	ENSMUST00000202294.4	1868	10	15475	4	-7	0	3prime_fragment	FALSE	canonical	3	614	junction_2	19.8037243971936	1135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTGCTCATAGTGTCCTGC	NA	False	NA	-5	True	ACTAAA	-18	NA	31362434	31360011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_31360629_31360915_31361019_31361373_31361504_31361796_31362032_31362341
ENSMUSG00000029147.12_31360012_31377909_1	chr5	-	2185	10	FSM	ENSMUSG00000029147.12	ENSMUST00000031032.11	2307	10	122	0	0	0	multi-exon	FALSE	canonical	3	595	junction_8	38.6382398699386	1224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTGCTCATAGTGTCCTGC	NA	False	NA	-5	True	ACTAAA	-18	NA	31377909	31360011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31360629_31360915_31361019_31361373_31361504_31361796_31362032_31362341_31362474_31363381_31363798_31364906_31365040_31365356_31365443_31365730_31365801_31377646
ENSMUSG00000029149.15_31409060_31410541_1	chr5	+	1094	5	NIC	ENSMUSG00000029149.15	novel	889	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	67	junction_1	11.8400802362146	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409059	31410541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_31409159_31409262_31409448_31409535_31410134_31410238_31410347_31410437
ENSMUSG00000029149.15_31409060_31410541_3	chr5	+	981	6	NIC	ENSMUSG00000029149.15	novel	889	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	67	junction_1	12.63962024746	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409059	31410541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31410134_31410238_31410347_31410437
ENSMUSG00000029149.15_31409060_31410541_4	chr5	+	891	7	NNC	ENSMUSG00000029149.15	novel	889	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_4	33.4335992013357	176	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409059	31410541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31409916_31410005_31410134_31410238_31410347_31410437
ENSMUSG00000029149.15_31409060_31410541_5	chr5	+	892	7	NNC	ENSMUSG00000029149.15	novel	889	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	31.1555238547945	352	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409059	31410541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410244_31410347_31410437
ENSMUSG00000029149.15_31409060_31410541_6	chr5	+	1198	4	NIC	ENSMUSG00000029149.15	novel	1027	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	89	junction_3	3.68178700572909	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409059	31410541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_31409448_31409535_31410134_31410238_31410347_31410437
ENSMUSG00000029149.15_31409060_31410541_7	chr5	+	995	6	NNC	ENSMUSG00000029149.15	novel	1027	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	6	junction_3	36.3483149540663	114	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409059	31410541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_31409448_31409535_31409596_31409708_31409916_31410005_31410134_31410238_31410347_31410437
ENSMUSG00000029151.15_31243450_31250813_1	chr5	-	1943	8	FSM	ENSMUSG00000029151.15	ENSMUST00000031037.14	2089	8	146	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	6.02037357305871	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCAGTCCAATTCCTC	3890	False	NA	0	True	AATAAA	-19	NA	31250813	31243449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31244263_31245300_31245436_31245648_31245755_31245951_31246151_31246662_31246817_31246897_31247045_31247399_31247582_31250606
ENSMUSG00000029152.14_73450175_73470943_1	chr5	+	1059	10	NIC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	0	-314	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	326.119874953224	660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGGTTTGTGTAATTTAA	NA	False	NA	NA	False	CATAAA	-17	NA	73450174	73470943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ENSMUSG00000029152.14_73450175_73470943_2	chr5	+	1008	9	NNC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	0	-314	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	310.505937946442	758	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGGTTTGTGTAATTTAA	NA	False	NA	NA	False	CATAAA	-17	NA	73450174	73470943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_73450320_73451627_73451691_73452274_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ENSMUSG00000029152.14_73450175_73471284_1	chr5	+	1349	9	NNC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	310.754097921492	2430	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	15	True	AATAAA	-16	NA	73450174	73471284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458055_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ENSMUSG00000029152.14_73450175_73471284_2	chr5	+	1347	9	NNC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	317.684960888928	2206	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	15	True	AATAAA	-16	NA	73450174	73471284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467624_73467770_73470785
ENSMUSG00000029152.14_73450175_73471284_3	chr5	+	1349	9	NNC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	310.505937946442	3644	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	15	True	AATAAA	-16	NA	73450174	73471284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_73450320_73451627_73451691_73452274_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ENSMUSG00000029152.14_73450175_73471284_4	chr5	+	1400	10	NIC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	326.119874953224	3280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	15	True	AATAAA	-16	NA	73450174	73471284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ENSMUSG00000029152.14_73450175_73471284_5	chr5	+	1400	9	NIC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_7	316.122602798345	1476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	15	True	AATAAA	-16	NA	73450174	73471284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464142_73467616_73467770_73470785
ENSMUSG00000029152.14_73450175_73471412_1	chr5	+	1528	10	NIC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	326.119874953224	4398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGTCTTTTTTTTAAAG	NA	False	NA	14	True	AATACA	-7	NA	73450174	73471412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ENSMUSG00000029153.12_73479542_73495936_1	chr5	-	2155	7	FSM	ENSMUSG00000029153.12	ENSMUST00000087195.9	2554	7	399	0	-35	0	multi-exon	FALSE	canonical	3	44	junction_6	41.8107508768844	857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGCTGGCTTTTTCTTCTT	NA	False	NA	-1	True	AATAAA	-35	NA	73495936	73479541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_73481191_73483623_73483742_73485005_73485054_73486609_73486664_73489446_73489544_73493162_73493289_73495873
ENSMUSG00000029153.12_73481009_73495936_1	chr5	-	688	7	FSM	ENSMUSG00000029153.12	ENSMUST00000087195.9	2554	7	399	1467	-35	-320	multi-exon	FALSE	canonical	3	44	junction_6	41.8107508768844	801	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTAATTCTCTCACCCCT	NA	False	NA	0	True	AATATA	-19	NA	73495936	73481008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_73481191_73483623_73483742_73485005_73485054_73486609_73486664_73489446_73489544_73493162_73493289_73495873
ENSMUSG00000029153.12_73481009_73496291_1	chr5	-	1043	7	FSM	ENSMUSG00000029153.12	ENSMUST00000087195.9	2554	7	44	1467	0	-320	multi-exon	FALSE	canonical	3	44	junction_6	41.8107508768844	911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTAATTCTCTCACCCCT	NA	False	NA	0	True	AATATA	-19	NA	73496291	73481008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_73481191_73483623_73483742_73485005_73485054_73486609_73486664_73489446_73489544_73493162_73493289_73495873
ENSMUSG00000029156.12_73792579_73805133_1	chr5	-	1299	6	FSM	ENSMUSG00000029156.12	ENSMUST00000081170.9	3786	6	0	2487	0	-2487	multi-exon	FALSE	canonical	3	39	junction_5	18.2756668824971	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTGTTTTTAACATTCTA	NA	False	NA	NA	False	AATAAA	-16	NA	73805133	73792578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_73793042_73796725_73796858_73797131_73797324_73798025_73798212_73801614_73801825_73805017
ENSMUSG00000029162.16_31078934_31088590_1	chr5	+	1422	8	NIC	ENSMUSG00000029162.16	novel	1257	9	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	9.11379309013519	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGTCTGTCTGTCTGTC	1142	False	NA	7	True	AATAAA	-16	NA	31078933	31088590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_31079352_31082082_31082200_31084031_31084167_31085786_31085860_31086864_31087012_31087891_31087981_31088059_31088218_31088305
ENSMUSG00000029162.16_31078934_31088590_2	chr5	+	1287	7	FSM	ENSMUSG00000029162.16	ENSMUST00000201571.4	1087	7	0	-200	0	1	multi-exon	FALSE	canonical	3	16	junction_1	5.24933858267454	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGTCTGTCTGTCTGTC	1142	False	NA	7	True	AATAAA	-16	NA	31078933	31088590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31079352_31082082_31082200_31085786_31085860_31086864_31087012_31087891_31087981_31088059_31088218_31088305
ENSMUSG00000029162.16_31079202_31088590_1	chr5	+	1019	7	FSM	ENSMUSG00000029162.16	ENSMUST00000201571.4	1087	7	268	-200	0	1	multi-exon	FALSE	canonical	3	16	junction_1	5.24933858267454	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGTCTGTCTGTCTGTC	1410	False	NA	7	True	AATAAA	-16	NA	31079201	31088590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31079352_31082082_31082200_31085786_31085860_31086864_31087012_31087891_31087981_31088059_31088218_31088305
ENSMUSG00000029162.16_31079202_31088590_2	chr5	+	1154	8	NIC	ENSMUSG00000029162.16	novel	1257	9	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	9.11379309013519	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGTCTGTCTGTCTGTC	1410	False	NA	7	True	AATAAA	-16	NA	31079201	31088590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_31079352_31082082_31082200_31084031_31084167_31085786_31085860_31086864_31087012_31087891_31087981_31088059_31088218_31088305
ENSMUSG00000029171.13_64273746_64285286_1	chr5	+	198	2	ISM	ENSMUSG00000029171.13	ENSMUST00000087324.7	2369	14	23453	408	4302	-221	3prime_fragment	FALSE	canonical	3	728	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATATTTTAGGGCCAAGTG	9368	False	NA	NA	False	AATAAA	-23	NA	64273745	64285286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_64273777_64285119
ENSMUSG00000029171.13_64273746_64285507_1	chr5	+	419	2	ISM	ENSMUSG00000029171.13	ENSMUST00000087324.7	2369	14	23453	187	4302	0	3prime_fragment	FALSE	canonical	3	728	junction_1	0	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTGTAAACAATATGCCTT	9368	False	NA	16	True	AATAAA	-22	NA	64273745	64285507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_64273777_64285119
ENSMUSG00000029171.13_64273746_64285698_1	chr5	+	610	2	ISM	ENSMUSG00000029171.13	ENSMUST00000087324.7	2369	14	23453	-4	4302	4	3prime_fragment	FALSE	canonical	3	728	junction_1	0	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGTTTATTTTTTTTAAC	9368	False	NA	NA	False	AATAAA	-19	NA	64273745	64285698	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_64273777_64285119
ENSMUSG00000029175.18_30805297_30815146_1	chr5	+	1141	6	FSM	ENSMUSG00000029175.18	ENSMUST00000062962.12	3088	6	20	1927	0	0	multi-exon	FALSE	canonical	3	97	junction_4	8.49470423263812	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGACTGCTAGGTGACAGT	6698	False	NA	NA	False	NA	NA	NA	30805296	30815146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_30805443_30812091_30812165_30812838_30813011_30813231_30813445_30814090_30814202_30814720
ENSMUSG00000029175.18_30805297_30815960_1	chr5	+	1955	6	FSM	ENSMUSG00000029175.18	ENSMUST00000062962.12	3088	6	20	1113	0	372	multi-exon	FALSE	canonical	3	97	junction_4	8.49470423263812	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTCCTTGATGTTTTGAC	6698	False	NA	9	True	NA	NA	NA	30805296	30815960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_30805443_30812091_30812165_30812838_30813011_30813231_30813445_30814090_30814202_30814720
ENSMUSG00000029176.14_52991354_53024076_1	chr5	+	2791	28	FSM	ENSMUSG00000029176.14	ENSMUST00000031072.14	3854	28	0	1063	0	0	multi-exon	FALSE	canonical	3	314	junction_6	48.5716418249863	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCATACTCTGTTCCA	NA	False	NA	13	True	AATAAA	-13	NA	52991353	53024076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999133_52999246_52999274_52999365_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53005332_53005398_53005935_53005979_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014149_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
ENSMUSG00000029176.14_52991468_53024076_1	chr5	+	2677	28	FSM	ENSMUSG00000029176.14	ENSMUST00000031072.14	3854	28	114	1063	0	0	multi-exon	FALSE	canonical	3	314	junction_6	48.5716418249863	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCATACTCTGTTCCA	NA	False	NA	13	True	AATAAA	-13	NA	52991467	53024076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999133_52999246_52999274_52999365_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53005332_53005398_53005935_53005979_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014149_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
ENSMUSG00000029176.14_52991468_53024076_2	chr5	+	2678	27	NNC	ENSMUSG00000029176.14	novel	2758	29	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	92.2988216891586	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCATACTCTGTTCCA	NA	False	NA	13	True	AATAAA	-13	NA	52991467	53024076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999133_52999337_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53005332_53005398_53005935_53005979_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014149_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
ENSMUSG00000029177.10_30824241_30831730_1	chr5	+	1065	6	NIC	ENSMUSG00000029177.10	novel	1031	6	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	33	junction_4	705.748510448304	6076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCTTGAATCTGTTGTATG	9186	False	NA	17	True	AATAAA	-1	NA	30824240	30831730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_30824458_30827035_30827173_30829807_30829915_30830325_30830404_30830610_30830788_30831381
ENSMUSG00000029177.10_30824279_30831546_1	chr5	+	680	5	FSM	ENSMUSG00000029177.10	ENSMUST00000144742.6	1466	5	158	628	0	0	multi-exon	FALSE	canonical	3	1270	junction_1	201.219407612685	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCGAGTGTTTGCAGACC	9224	False	NA	NA	False	NA	NA	NA	30824278	30831546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_30824458_30829807_30829915_30830325_30830404_30830636_30830788_30831381
ENSMUSG00000029177.10_30824279_30831730_1	chr5	+	859	5	NNC	ENSMUSG00000029177.10	novel	1466	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	702.14292526522	5522	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCTTGAATCTGTTGTATG	9224	False	NA	17	True	AATAAA	-1	NA	30824278	30831730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_30824458_30829807_30829915_30830330_30830404_30830636_30830788_30831381
ENSMUSG00000029177.10_30824279_30831730_2	chr5	+	1041	7	NNC	ENSMUSG00000029177.10	novel	1007	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	787.187186548833	3709	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCTTGAATCTGTTGTATG	9224	False	NA	17	True	AATAAA	-1	NA	30824278	30831730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_30824458_30827035_30827173_30827718_30827759_30829807_30829915_30830325_30830404_30830636_30830788_30831381
ENSMUSG00000029177.10_30824279_30831730_3	chr5	+	996	6	NNC	ENSMUSG00000029177.10	novel	1031	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	692.222796504131	3493	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCTTGAATCTGTTGTATG	9224	False	NA	17	True	AATAAA	-1	NA	30824278	30831730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_30824458_30827035_30827173_30829807_30829915_30830330_30830404_30830636_30830788_30831381
ENSMUSG00000029178.15_64955290_64980452_1	chr5	+	895	4	NNC	ENSMUSG00000029178.15	novel	4016	3	NA	NA	-5441	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	319.679005670793	467	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGTGCTGTGGATGGC	NA	False	NA	18	True	AATAAA	-18	NA	64955289	64980452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_64955374_64974077_64974174_64979216_64979701_64980221
ENSMUSG00000029178.15_64955290_64980452_2	chr5	+	1049	5	NNC	ENSMUSG00000029178.15	novel	4016	3	NA	NA	-5441	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	351.299996441788	457	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGTGCTGTGGATGGC	NA	False	NA	18	True	AATAAA	-18	NA	64955289	64980452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_64955374_64957556_64957711_64974077_64974174_64979216_64979701_64980221
ENSMUSG00000029178.15_64955290_64986895_1	chr5	+	1552	6	NNC	ENSMUSG00000029178.15	novel	298	4	NA	NA	-5441	2	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	263.203039496127	198	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCCAGCCTATTAGTCCT	NA	False	NA	5	True	AGTAAA	-16	NA	64955289	64986895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_64955374_64974077_64974174_64979216_64979701_64980221_64980373_64984452_64984614_64986319
ENSMUSG00000029191.17_65468460_65492988_1	chr5	-	371	4	FSM	ENSMUSG00000029191.17	ENSMUST00000203644.2	485	4	-32	146	-24	-146	multi-exon	FALSE	canonical	3	537	junction_1	39.3474550920669	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAAAAATTGTCACTGTC	-1	True	NA	NA	False	AAAAAG	-4	NA	65492988	65468459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_65468507_65470300_65470377_65476747_65476874_65492866
ENSMUSG00000029198.4_36622529_36629041_1	chr5	+	958	4	FSM	ENSMUSG00000029198.4	ENSMUST00000031099.4	3528	4	187	2383	187	-2383	multi-exon	FALSE	canonical	3	2567	junction_1	75.3126815350509	27109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGCTGCACAGTCTACC	NA	False	NA	15	True	AATAAA	-16	NA	36622528	36629041	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_36622600_36626781_36626945_36627945_36628028_36628399
ENSMUSG00000029199.12_65548887_65566318_1	chr5	+	1389	11	FSM	ENSMUSG00000029199.12	ENSMUST00000122026.6	1668	11	47	232	0	-232	multi-exon	FALSE	canonical	3	315	junction_10	33.1264244976726	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAGAAAAGAAGAAAGAAAAG	6933	False	NA	NA	False	NA	NA	NA	65548886	65566318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
ENSMUSG00000029199.12_65548887_65566550_1	chr5	+	1616	11	NNC	ENSMUSG00000029199.12	novel	1668	11	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_7	115.032386743908	2515	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCGTGTGTGTATGTGT	6933	False	NA	48	True	AAAAAG	-11	NA	65548886	65566550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559958_65560100_65561510_65561582_65562672_65562785_65566077
ENSMUSG00000029199.12_65548887_65566550_2	chr5	+	1506	11	FSM	ENSMUSG00000029199.12	ENSMUST00000031101.10	2996	11	4	1486	0	0	multi-exon	FALSE	canonical	3	30	junction_1	106.686643962588	1248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCGTGTGTGTATGTGT	6933	False	NA	48	True	AAAAAG	-11	NA	65548886	65566550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_65549017_65549677_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
ENSMUSG00000029201.15_65579929_65593292_1	chr5	-	1193	6	ISM	ENSMUSG00000029201.15	ENSMUST00000031103.14	2550	12	0	9365	0	768	5prime_fragment	FALSE	canonical	3	385	junction_4	43.0655314607866	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTAACATGTCCAGGTTT	NA	False	NA	NA	False	AGTAAA	-6	NA	65593292	65579928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_65580126_65580503_65580702_65580792_65580994_65581384_65581487_65584758_65584928_65592966
ENSMUSG00000029203.17_65694634_65752488_1	chr5	+	992	7	FSM	ENSMUSG00000029203.17	ENSMUST00000142407.8	4893	7	58	3843	0	0	multi-exon	FALSE	canonical	0	0	junction_2	503.727025944277	10512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAAATACTTTTAATTTT	NA	False	NA	20	True	AATAAA	-31	NA	65694633	65752488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_65694890_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ENSMUSG00000029203.17_65694705_65752488_1	chr5	+	768	5	FSM	ENSMUSG00000029203.17	ENSMUST00000201984.4	1449	5	71	610	0	0	multi-exon	FALSE	canonical	3	45	junction_1	582.178398345387	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAAATACTTTTAATTTT	NA	False	NA	20	True	AATAAA	-31	NA	65694704	65752488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_65694890_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ENSMUSG00000029203.17_65694705_65752488_2	chr5	+	827	6	FSM	ENSMUSG00000029203.17	ENSMUST00000202679.4	4682	6	71	3784	0	0	multi-exon	FALSE	canonical	3	526	junction_1	338.408628731597	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAAATACTTTTAATTTT	NA	False	NA	20	True	AATAAA	-31	NA	65694704	65752488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_65694890_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ENSMUSG00000029203.17_65694705_65752488_3	chr5	+	921	7	FSM	ENSMUSG00000029203.17	ENSMUST00000142407.8	4893	7	129	3843	0	0	multi-exon	FALSE	canonical	0	0	junction_2	503.727025944277	9266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAAATACTTTTAATTTT	NA	False	NA	20	True	AATAAA	-31	NA	65694704	65752488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_65694890_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ENSMUSG00000029203.17_65694705_65753098_1	chr5	+	1531	7	FSM	ENSMUSG00000029203.17	ENSMUST00000142407.8	4893	7	129	3233	0	0	multi-exon	FALSE	canonical	0	0	junction_2	503.727025944277	9839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGACATTAATTTTTAAAA	NA	False	NA	26	True	AATAAA	-27	NA	65694704	65753098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_65694890_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ENSMUSG00000029205.13_66133239_66134669_1	chr5	+	856	2	NNC	ENSMUSG00000029205.13	novel	550	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGTTTGAGTTCAATTG	NA	False	NA	NA	False	AATAAA	-19	NA	66133238	66134669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_66133474_66134048
ENSMUSG00000029208.17_69732344_69749636_1	chr5	+	1841	7	NIC	ENSMUSG00000029208.17	novel	6321	4	NA	NA	4810	16320	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	621	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAAGCCTGAGAACCCGG	NA	False	NA	NA	False	NA	NA	NA	69732343	69749636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_69733297_69735320_69735496_69736850_69737030_69742316_69742500_69743807_69743910_69747003_69747167_69749550
ENSMUSG00000029209.16_69733155_69749636_1	chr5	-	1036	7	FSM	ENSMUSG00000029209.16	ENSMUST00000031117.13	1894	7	47	811	0	0	multi-exon	FALSE	canonical	3	104	junction_4	11.5998084275369	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAAAAACAAAAAAAA	NA	False	NA	NA	False	GATAAA	-37	NA	69749636	69733154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_69733297_69735320_69735496_69736850_69737036_69742316_69742500_69743807_69743910_69747003_69747167_69749550
ENSMUSG00000029213.12_72316354_72325499_1	chr5	-	1426	5	FSM	ENSMUSG00000029213.12	ENSMUST00000013693.11	3895	5	33	2436	0	0	multi-exon	FALSE	canonical	3	313	junction_3	25.4889682019496	3185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTGTTGCTTGATTTC	NA	False	NA	-4	True	AATACA	-14	NA	72325499	72316353	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325421
ENSMUSG00000029213.12_72316354_72325499_2	chr5	-	1542	5	NNC	ENSMUSG00000029213.12	novel	3895	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_4	141.390416931276	2670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTGTTGCTTGATTTC	NA	False	NA	-4	True	AATACA	-14	NA	72325499	72316353	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325305
ENSMUSG00000029213.12_72316592_72325499_1	chr5	-	1188	5	FSM	ENSMUSG00000029213.12	ENSMUST00000013693.11	3895	5	33	2674	0	-238	multi-exon	FALSE	canonical	3	313	junction_3	25.4889682019496	708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAATAACATTGTTATTT	NA	False	NA	NA	False	ACTAAA	-19	NA	72325499	72316591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325421
ENSMUSG00000029213.12_72316944_72325499_1	chr5	-	836	5	FSM	ENSMUSG00000029213.12	ENSMUST00000013693.11	3895	5	33	3026	0	275	multi-exon	FALSE	canonical	3	313	junction_3	25.4889682019496	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAACGTTTTATCAAGAGG	NA	False	NA	-14	True	ATTAAA	-19	NA	72325499	72316943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325421
ENSMUSG00000029223.13_66833585_66844577_2	chr5	+	992	9	NNC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	219.386502547445	689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTTATTTTCTCTT	NA	False	NA	33	True	AATAAA	-22	NA	66833584	66844577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_66833666_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184_66844332_66844353
ENSMUSG00000029223.13_66833585_66844577_3	chr5	+	1522	8	NIC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	449	junction_3	34.4211610282194	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTTATTTTCTCTT	NA	False	NA	33	True	AATAAA	-22	NA	66833584	66844577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_66833666_66833778_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
ENSMUSG00000029223.13_66833585_66844577_4	chr5	+	1007	9	NNC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	167.970933125348	5019	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTTATTTTCTCTT	NA	False	NA	33	True	AATAAA	-22	NA	66833584	66844577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_66833683_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184_66844324_66844347
ENSMUSG00000029223.13_66833585_66844577_5	chr5	+	1014	8	NIC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	178.588113506231	1494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTTATTTTCTCTT	NA	False	NA	33	True	AATAAA	-22	NA	66833584	66844577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_66833666_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
ENSMUSG00000029223.13_66833585_66844577_6	chr5	+	990	9	NNC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	219.386502547445	2433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTTATTTTCTCTT	NA	False	NA	33	True	AATAAA	-22	NA	66833584	66844577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_66833666_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184_66844323_66844346
ENSMUSG00000029227.16_74696164_74756814_1	chr5	+	2159	19	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	0	8	combination_of_known_junctions	TRUE	canonical	3	110	junction_9	215.964760499897	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCTTGTAATATTTA	NA	False	NA	30	True	AATAAA	-31	NA	74696163	74756814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ENSMUSG00000029227.16_74696164_74756814_2	chr5	+	2063	17	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	0	8	combination_of_known_junctions	FALSE	canonical	3	220	junction_12	176.742209428733	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCTTGTAATATTTA	NA	False	NA	30	True	AATAAA	-31	NA	74696163	74756814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ENSMUSG00000029227.16_74696164_74756814_3	chr5	+	2051	18	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	0	8	combination_of_known_junctions	FALSE	canonical	3	110	junction_9	206.218767164378	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCTTGTAATATTTA	NA	False	NA	30	True	AATAAA	-31	NA	74696163	74756814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ENSMUSG00000029227.16_74696164_74756814_4	chr5	+	2090	18	FSM	ENSMUSG00000029227.16	ENSMUST00000113536.8	4769	18	32	2647	0	8	multi-exon	FALSE	canonical	3	259	junction_9	161.909389842069	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCTTGTAATATTTA	NA	False	NA	30	True	AATAAA	-31	NA	74696163	74756814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ENSMUSG00000029227.16_74752555_74756814_1	chr5	+	553	3	ISM	ENSMUSG00000029227.16	ENSMUST00000113535.9	1969	16	56413	-8	-2826	8	3prime_fragment	FALSE	canonical	3	796	junction_2	10	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCTTGTAATATTTA	NA	False	NA	30	True	AATAAA	-31	NA	74752554	74756814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_74752655_74755734_74755873_74756499
ENSMUSG00000029229.9_75167080_75204982_1	chr5	-	815	6	FSM	ENSMUSG00000029229.9	ENSMUST00000075452.7	9699	6	453	8431	0	4761	multi-exon	FALSE	canonical	3	625	junction_4	34.4290574950869	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCAGCCTTTGTTATTTT	NA	False	NA	79	True	CATAAA	-3	NA	75204982	75167079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_75167425_75171891_75171952_75172113_75172171_75187728_75187885_75188021_75188077_75204840
ENSMUSG00000029233.16_76288153_76303093_1	chr5	+	1479	6	FSM	ENSMUSG00000029233.16	ENSMUST00000031143.13	1747	6	35	233	0	0	multi-exon	FALSE	canonical	3	49	junction_4	4.14728827066554	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAATATGAATGTACAGTA	NA	False	NA	NA	False	AATAAA	-34	NA	76288152	76303093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_76288396_76295532_76295676_76297049_76297086_76297599_76297798_76301370_76301506_76302369
ENSMUSG00000029233.16_76288153_76303326_1	chr5	+	1686	7	NNC	ENSMUSG00000029233.16	novel	1747	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	20.8439972707305	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCCTGGACTGGGTAACAT	NA	False	NA	15	True	AATAAA	-27	NA	76288152	76303326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_76288396_76295532_76295676_76297049_76297086_76297599_76297798_76301370_76301506_76302369_76302942_76302967
ENSMUSG00000029234.14_76347192_76357092_1	chr5	+	1424	5	ISM	ENSMUSG00000029234.14	ENSMUST00000031144.14	1897	6	15465	0	-100	0	3prime_fragment	FALSE	canonical	3	1062	junction_2	74.4143803306861	466	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTCCTCGTGTGTTA	NA	False	NA	7	True	AATAAA	-15	NA	76347191	76357092	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_76347418_76351953_76352130_76352483_76352664_76355648_76355755_76356356
ENSMUSG00000029235.15_76459974_76478980_1	chr5	-	805	4	NIC	ENSMUSG00000029235.15	novel	1181	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	45.5192267069642	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGTGCACCATGTGT	NA	False	NA	NA	False	AATAAA	-31	NA	76478980	76459973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_76460446_76472152_76472244_76472839_76472961_76478859
ENSMUSG00000029235.15_76459974_76478980_3	chr5	-	949	5	NIC	ENSMUSG00000029235.15	novel	1181	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	37.1483512420134	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGTGCACCATGTGT	NA	False	NA	NA	False	AATAAA	-31	NA	76478980	76459973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_76460446_76466973_76467118_76472152_76472244_76472839_76472961_76478859
ENSMUSG00000029235.15_76460265_76478980_2	chr5	-	658	5	NIC	ENSMUSG00000029235.15	novel	1181	6	NA	NA	0	-291	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	37.1483512420134	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATCGAATGCCTTATTTC	NA	False	NA	NA	False	AATAAA	-16	NA	76478980	76460264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_76460446_76466973_76467118_76472152_76472244_76472839_76472961_76478859
ENSMUSG00000029238.12_76416937_76452622_1	chr5	-	750	4	NNC	ENSMUSG00000029238.12	novel	2287	3	NA	NA	-3	2864	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	14.2361043360417	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTCTGTATACTTGGAAT	NA	False	NA	NA	False	AATAAA	-20	NA	76452622	76416936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_76417402_76421805_76421891_76451270_76451350_76452501
ENSMUSG00000029246.15_77061096_77099066_1	chr5	-	3649	11	FSM	ENSMUSG00000029246.15	ENSMUST00000140076.2	3981	11	359	-27	-54	0	multi-exon	FALSE	canonical	3	550	junction_6	47.121226639382	3426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAACAGCACCACGTTCCA	NA	False	NA	76	True	AATAAA	-30	NA	77099066	77061095	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_77063253_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
ENSMUSG00000029246.15_77062891_77099419_1	chr5	-	2207	11	FSM	ENSMUSG00000029246.15	ENSMUST00000140076.2	3981	11	6	1768	0	0	multi-exon	FALSE	canonical	3	550	junction_6	47.121226639382	2579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTACATGGAATGCAGCAT	NA	False	NA	-15	True	ATTAAA	-20	NA	77099419	77062890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_77063253_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
ENSMUSG00000029246.15_77099195_77115166_1	chr5	-	1888	10	NIC	ENSMUSG00000029246.15	novel	3981	11	NA	NA	-15741	-36304	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACCTCGGCCTCCTCCCC	NA	False	NA	NA	False	NA	NA	NA	77115166	77099194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ENSMUSG00000029246.15_77099195_77115356_1	chr5	-	2078	10	NIC	ENSMUSG00000029246.15	novel	3981	11	NA	NA	-15931	-36304	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	6391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACCTCGGCCTCCTCCCC	NA	False	NA	NA	False	NA	NA	NA	77115356	77099194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ENSMUSG00000029247.18_77099478_77115356_1	chr5	+	2062	10	FSM	ENSMUSG00000029247.18	ENSMUST00000120912.8	2345	10	283	0	-146	0	multi-exon	FALSE	canonical	3	123	junction_1	1026.8195172413	6247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGCTGTGTGGTCTATA	610	False	NA	19	True	ATTAAA	-22	NA	77099477	77115356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_77099516_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ENSMUSG00000029247.18_77099624_77115356_1	chr5	+	2016	9	FSM	ENSMUSG00000029247.18	ENSMUST00000031160.16	2482	9	470	-4	0	0	multi-exon	FALSE	canonical	3	3017	junction_4	215.03720608304	5542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGCTGTGTGGTCTATA	756	False	NA	19	True	ATTAAA	-22	NA	77099623	77115356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ENSMUSG00000029249.16_77408166_77429156_1	chr5	+	1803	4	NNC	ENSMUSG00000029249.16	novel	7004	4	NA	NA	-5172	-5123	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	390.478623685799	349	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGATGCTGAGGCCCATC	588	False	NA	-83	True	AAGAAA	-12	NA	77408165	77429156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_77408386_77415778_77416671_77423080_77423165_77428549
ENSMUSG00000029249.16_77413338_77429222_1	chr5	+	1947	4	FSM	ENSMUSG00000029249.16	ENSMUST00000080359.12	7004	4	0	5057	0	-5057	multi-exon	FALSE	canonical	3	740	junction_1	62.4731053245226	786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTCTGAGTGCAAATCAA	3696	False	NA	-17	True	AAAAAG	-6	NA	77413337	77429222	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_77413636_77415778_77416671_77423080_77423165_77428549
ENSMUSG00000029250.6_77490593_77497171_1	chr5	+	949	7	ISM	ENSMUSG00000029250.6	ENSMUST00000031167.6	4145	25	32599	0	2378	0	3prime_fragment	FALSE	canonical	3	441	junction_6	18.6971477325643	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGTGTTATCTTTGATT	NA	False	NA	16	True	AATAAA	-16	NA	77490592	77497171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_77490628_77490707_77490798_77491016_77491125_77492638_77492753_77493097_77493259_77496069_77496266_77496926
ENSMUSG00000029267.18_108208606_108251913_1	chr5	+	1460	13	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4934	8	intron_retention	FALSE	canonical	0	0	junction_3	755.403695420902	437	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAAAAAATCTGTAGG	NA	False	NA	NA	False	AATACA	-42	NA	108208605	108251913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_108208730_108221172_108221321_108228690_108228894_108229002_108229089_108234867_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885
ENSMUSG00000029267.18_108208606_108251913_2	chr5	+	1375	13	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4934	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	798.326774503329	335	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAAAAAATCTGTAGG	NA	False	NA	NA	False	AATACA	-42	NA	108208605	108251913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_108208730_108221172_108221321_108228775_108228894_108229002_108229089_108234867_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885
ENSMUSG00000029267.18_108208606_108251913_3	chr5	+	1312	12	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4934	8	intron_retention	FALSE	canonical	0	0	junction_2	677.856575678132	685	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAAAAAATCTGTAGG	NA	False	NA	NA	False	AATACA	-42	NA	108208605	108251913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_108208730_108228690_108228894_108229002_108229089_108234867_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885
ENSMUSG00000029267.18_108208606_108251913_4	chr5	+	1226	12	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4934	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	775.088200792829	260	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAAAAAATCTGTAGG	NA	False	NA	NA	False	AATACA	-42	NA	108208605	108251913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_108208730_108228776_108228894_108229002_108229089_108234867_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885
ENSMUSG00000029267.18_108213583_108251913_1	chr5	+	1436	12	ISM	ENSMUSG00000029267.18	ENSMUST00000124195.8	2549	15	6	3411	0	8	5prime_fragment	FALSE	canonical	0	0	junction_2	757.303262507801	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAAAAAATCTGTAGG	NA	False	NA	NA	False	AATACA	-42	NA	108213582	108251913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_108213832_108228690_108228894_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885
ENSMUSG00000029267.18_108235808_108251913_1	chr5	+	704	7	ISM	ENSMUSG00000029267.18	ENSMUST00000198662.5	2675	16	9777	3423	946	8	internal_fragment	FALSE	canonical	3	1473	junction_1	110.170700884279	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAAAAAATCTGTAGG	NA	False	NA	NA	False	AATACA	-42	NA	108235807	108251913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885
ENSMUSG00000029267.18_108235808_108251913_2	chr5	+	699	7	NNC	ENSMUSG00000029267.18	novel	2549	15	NA	NA	946	8	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_6	609.19965710941	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAAAAAATCTGTAGG	NA	False	NA	NA	False	AATACA	-42	NA	108235807	108251913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251890
ENSMUSG00000029267.18_108235808_108251913_3	chr5	+	697	7	NNC	ENSMUSG00000029267.18	novel	2549	15	NA	NA	946	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	625.641737205354	75	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAAAAAATCTGTAGG	NA	False	NA	NA	False	AATACA	-42	NA	108235807	108251913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246991_108247053_108248678_108248850_108251885
ENSMUSG00000029267.18_108235808_108251913_4	chr5	+	782	8	NIC	ENSMUSG00000029267.18	novel	582	7	NA	NA	946	8	combination_of_known_junctions	FALSE	canonical	3	67	junction_5	710.31516431304	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAAAAAATCTGTAGG	NA	False	NA	NA	False	AATACA	-42	NA	108235807	108251913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108247519_108247598_108248678_108248850_108251885
ENSMUSG00000029267.18_108235808_108256872_1	chr5	+	3359	10	ISM	ENSMUSG00000029267.18	ENSMUST00000198662.5	2675	16	9777	-1536	946	2	3prime_fragment	FALSE	canonical	3	1473	junction_1	115.345321577759	965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATGAGTTTTTCTTCTG	NA	False	NA	35	True	ATTAAA	-36	NA	108235807	108256872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUSG00000029270.11_108048438_108055921_1	chr5	-	1019	8	NNC	ENSMUSG00000029270.11	novel	2721	5	NA	NA	64943	7481	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9470	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGGAGTCACGTACGCATG	9608	False	NA	NA	False	AAAAAG	-1	NA	108055921	108048437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055060_108055144_108055762
ENSMUSG00000029270.11_108048438_108055921_2	chr5	-	1025	8	NIC	ENSMUSG00000029270.11	novel	2721	5	NA	NA	64943	7481	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	39202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGGAGTCACGTACGCATG	9608	False	NA	NA	False	AAAAAG	-1	NA	108055921	108048437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
ENSMUSG00000029270.11_108048438_108056871_1	chr5	-	1975	8	NIC	ENSMUSG00000029270.11	novel	2721	5	NA	NA	63993	7481	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	44898	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGGAGTCACGTACGCATG	9347	False	NA	NA	False	AAAAAG	-1	NA	108056871	108048437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
ENSMUSG00000029270.11_108056830_108134899_1	chr5	-	1758	5	FSM	ENSMUSG00000029270.11	ENSMUST00000031198.11	2721	5	52	911	0	739	multi-exon	FALSE	canonical	3	143	junction_2	18.0883249639097	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGATTTACTGTGTACTT	NA	False	NA	NA	False	ATTAAA	-17	NA	108134899	108056829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_108058083_108059477_108059655_108062211_108062320_108072450_108072586_108134814
ENSMUSG00000029276.14_107719929_107745505_1	chr5	-	1081	7	ISM	ENSMUSG00000029276.14	ENSMUST00000078021.13	2015	19	0	23096	0	217	5prime_fragment	FALSE	canonical	3	217	junction_3	24.4267612807483	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACGGTCTTGAAAATGTG	NA	False	NA	NA	False	AATAAA	-21	NA	107745505	107719928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_107720249_107721550_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653_107744729_107745409
ENSMUSG00000029304.15_104582987_104588776_1	chr5	+	1267	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	3	140	0	-133	multi-exon	FALSE	canonical	3	5474	junction_3	341.773032223953	1270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAATTTACTGAAACAAGC	NA	False	NA	-83	True	AATAAA	-17	NA	104582986	104588776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ENSMUSG00000029310.14_104194392_104213245_1	chr5	+	1523	8	NIC	ENSMUSG00000029310.14	novel	995	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	64	junction_1	99.0728447730687	1098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTTCAAGTTCTCCC	NA	False	NA	20	True	AATAAA	-23	NA	104194391	104213245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_104194705_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
ENSMUSG00000029310.14_104194669_104213245_1	chr5	+	1246	8	NIC	ENSMUSG00000029310.14	novel	995	6	NA	NA	-66	0	combination_of_known_junctions	FALSE	canonical	3	64	junction_1	99.0728447730687	1019	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTTCAAGTTCTCCC	NA	False	NA	20	True	AATAAA	-23	NA	104194668	104213245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_104194705_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
ENSMUSG00000029312.13_104009946_104015414_1	chr5	-	1370	3	ISM	ENSMUSG00000029312.13	ENSMUST00000131843.2	2283	7	18742	0	6821	0	3prime_fragment	FALSE	canonical	3	128	junction_2	5	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAGAAAAAAATGGAAACTA	6786	False	NA	NA	False	AATAAA	-16	NA	104015414	104009945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_104011058_104012067_104012270_104015358
ENSMUSG00000029326.14_100187844_100216620_1	chr5	+	1805	6	NNC	ENSMUSG00000029326.14	novel	1833	6	NA	NA	0	1	intron_retention	FALSE	canonical	3	76	junction_1	168.151122505917	1402	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTTTCATACAGACGTG	NA	False	NA	16	True	AATAAA	-16	NA	100187843	100216620	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_100188133_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
ENSMUSG00000029326.14_100187903_100216619_1	chr5	+	1745	6	NNC	ENSMUSG00000029326.14	novel	1420	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	76	junction_1	168.151122505917	1353	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTTTCATACAGACGT	NA	False	NA	15	True	AATAAA	-15	NA	100187902	100216619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_100188133_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
ENSMUSG00000029326.14_100187927_100216784_1	chr5	+	1090	7	NNC	ENSMUSG00000029326.14	novel	1420	7	NA	NA	0	165	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	182.362886087664	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGATTCAAACGTTATTT	NA	False	NA	NA	False	TATAAA	-24	NA	100187926	100216784	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657_100215801_100216625
ENSMUSG00000029328.16_100181436_100186769_1	chr5	-	2440	8	FSM	ENSMUSG00000029328.16	ENSMUST00000128187.8	2752	8	312	0	-15	0	multi-exon	FALSE	canonical	3	572	junction_1	185.830183616271	2960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTTAAGTCTTGCTAT	NA	False	NA	-14	True	AATAAA	-18	NA	100186769	100181435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUSG00000029328.16_100182580_100186610_1	chr5	-	1137	8	FSM	ENSMUSG00000029328.16	ENSMUST00000128187.8	2752	8	471	1144	118	0	multi-exon	FALSE	canonical	3	572	junction_1	185.830183616271	1031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186610	100182579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUSG00000029328.16_100182580_100186769_1	chr5	-	2051	8	NIC	ENSMUSG00000029328.16	novel	2149	9	NA	NA	-15	0	intron_retention	FALSE	canonical	3	230	junction_1	297.206243239284	657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUSG00000029328.16_100182580_100186769_2	chr5	-	1401	9	FSM	ENSMUSG00000029328.16	ENSMUST00000086900.11	2149	9	754	-6	-15	0	multi-exon	FALSE	canonical	3	230	junction_2	358.236915322807	1654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_100182844_100183493_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUSG00000029328.16_100182580_100186769_3	chr5	-	2700	6	NIC	ENSMUSG00000029328.16	novel	2374	7	NA	NA	-15	0	intron_retention	FALSE	canonical	3	934	junction_2	94.4681957062799	692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUSG00000029328.16_100182580_100186769_4	chr5	-	1296	8	FSM	ENSMUSG00000029328.16	ENSMUST00000128187.8	2752	8	312	1144	-15	0	multi-exon	FALSE	canonical	3	572	junction_1	185.830183616271	2538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
ENSMUSG00000029328.16_100182580_100186769_5	chr5	-	1442	8	NIC	ENSMUSG00000029328.16	novel	2752	8	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_7	355.117974073693	1262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186769	100182579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
ENSMUSG00000029344.16_112424570_112463222_1	chr5	+	905	6	NIC	ENSMUSG00000029344.16	novel	1835	7	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	115.943779479539	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGTGAGTAGCTTTCTT	NA	False	NA	22	True	AATAAA	-32	NA	112424569	112463222	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_112424638_112451765_112451838_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ENSMUSG00000029344.16_112436628_112463222_1	chr5	+	1800	7	NIC	ENSMUSG00000029344.16	novel	442	5	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	101	junction_1	87.1615677284942	516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGTGAGTAGCTTTCTT	NA	False	NA	22	True	AATAAA	-32	NA	112436627	112463222	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_112436679_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ENSMUSG00000029344.16_112436628_112463222_2	chr5	+	888	6	NIC	ENSMUSG00000029344.16	novel	442	5	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	128.790372310977	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGTGAGTAGCTTTCTT	NA	False	NA	22	True	AATAAA	-32	NA	112436627	112463222	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_112436679_112451765_112451838_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ENSMUSG00000029345.14_112474287_112485254_1	chr5	+	2812	14	FSM	ENSMUSG00000029345.14	ENSMUST00000031288.14	3560	14	63	685	0	115	multi-exon	FALSE	canonical	3	92	junction_4	15.3503464486856	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGATGAATAACGTCTCTA	NA	False	NA	25	True	AATAAA	-17	NA	112474286	112485254	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_112474340_112475350_112475537_112475827_112476049_112477231_112477386_112477612_112477770_112478956_112479085_112479733_112479887_112480829_112481358_112481440_112481548_112482182_112482352_112482725_112482970_112483438_112483582_112483880_112484047_112484851
ENSMUSG00000029346.13_112485258_112487810_1	chr5	-	698	5	ISM	ENSMUSG00000029346.13	ENSMUST00000146510.8	1064	7	3076	0	-12	0	3prime_fragment	FALSE	canonical	3	101	junction_3	15.0727402949829	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTTTACAGTGCTGT	NA	False	NA	-7	True	AATAGA	-14	NA	112487810	112485257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_112485608_112485867_112485914_112486183_112486339_112487584_112487684_112487762
ENSMUSG00000029352.15_113223709_113227840_1	chr5	-	720	4	ISM	ENSMUSG00000029352.15	ENSMUST00000076069.13	816	5	693	4	417	0	3prime_fragment	FALSE	canonical	3	12	junction_2	4.78423336480244	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCAGCTCTGTCTGTGTCAC	NA	False	NA	NA	False	AATAAA	-13	NA	113227840	113223708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_113223938_113225400_113225544_113226248_113226382_113227625
ENSMUSG00000029359.14_118174096_118199935_1	chr5	+	807	7	NIC	ENSMUSG00000029359.14	novel	785	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	3	junction_1	32.949456242352	342	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGGCATCCCCATCTGTC	4368	False	NA	9	True	AATAAA	-14	NA	118174095	118199935	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_118174195_118191648_118191730_118192894_118193035_118194441_118194504_118194601_118194710_118197506_118197555_118199666
ENSMUSG00000029359.14_118174096_118199935_2	chr5	+	975	7	NIC	ENSMUSG00000029359.14	novel	785	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	27	junction_1	24.4040069569642	459	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGGCATCCCCATCTGTC	4368	False	NA	9	True	AATAAA	-14	NA	118174095	118199935	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_118174195_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194710_118197506_118197555_118199666
ENSMUSG00000029359.14_118174096_118199935_3	chr5	+	877	8	NIC	ENSMUSG00000029359.14	novel	785	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	22.6445470302252	507	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGGCATCCCCATCTGTC	4368	False	NA	9	True	AATAAA	-14	NA	118174095	118199935	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_118174195_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194504_118194601_118194710_118197506_118197555_118199666
ENSMUSG00000029361.19_118087658_118092429_1	chr5	+	922	3	ISM	ENSMUSG00000029361.19	ENSMUST00000102557.10	4591	29	82479	-455	30418	0	3prime_fragment	FALSE	canonical	3	46	junction_1	6.5	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTCCTAGATGTCGTTA	NA	False	NA	NA	False	NA	NA	NA	118087657	118092429	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_118087894_118090829_118090949_118091862
ENSMUSG00000029363.15_117517210_117527112_1	chr5	-	1748	11	NNC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	0	472	at_least_one_novel_splicesite	TRUE	canonical	3	7	junction_1	550.336524319439	2674	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGCTGGGCTGTCTACCT	NA	False	NA	-16	True	AATAAA	-20	NA	117527112	117517209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_117517966_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
ENSMUSG00000029363.15_117517210_117527112_2	chr5	-	1749	11	NNC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	0	472	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	553.020288958733	2921	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGCTGGGCTGTCTACCT	NA	False	NA	-16	True	AATAAA	-20	NA	117527112	117517209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522665_117523452_117523533_117524786_117524924_117525933_117525999_117526981
ENSMUSG00000029363.15_117517210_117527112_3	chr5	-	1759	11	NNC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	0	472	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	552.384431351934	4022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGCTGGGCTGTCTACCT	NA	False	NA	-16	True	AATAAA	-20	NA	117527112	117517209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522590_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
ENSMUSG00000029363.15_117517210_117527112_4	chr5	-	1754	11	FSM	ENSMUSG00000029363.15	ENSMUST00000086461.13	2796	11	0	1042	0	472	multi-exon	FALSE	canonical	3	1613	junction_7	125.046431376509	4232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGCTGGGCTGTCTACCT	NA	False	NA	-16	True	AATAAA	-20	NA	117527112	117517209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
ENSMUSG00000029366.11_88913036_88929358_1	chr5	+	1115	7	FSM	ENSMUSG00000029366.11	ENSMUST00000031311.10	3078	7	181	1782	181	-1782	multi-exon	FALSE	canonical	3	177	junction_6	17.3052657368277	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGGAGTCTGGAGGTAGA	NA	False	NA	NA	False	AATAAA	-21	NA	88913035	88929358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_88913206_88917462_88917579_88920488_88920683_88921940_88922089_88924715_88924832_88926220_88926312_88929078
ENSMUSG00000029366.11_88913036_88931140_1	chr5	+	2897	7	FSM	ENSMUSG00000029366.11	ENSMUST00000031311.10	3078	7	181	0	181	0	multi-exon	FALSE	canonical	3	177	junction_6	17.3052657368277	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGACTTTAAAATTTTC	NA	False	NA	27	True	AATAAA	-24	NA	88913035	88931140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_88913206_88917462_88917579_88920488_88920683_88921940_88922089_88924715_88924832_88926220_88926312_88929078
ENSMUSG00000029387.11_124717229_124724367_1	chr5	+	468	5	NNC	ENSMUSG00000029387.11	novel	734	9	NA	NA	0	4632	at_least_one_novel_splicesite	FALSE	canonical	1	25	junction_4	298.010486392677	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTAAATGTGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	124717228	124724367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_124717265_124720510_124720591_124721996_124722104_124722198_124722366_124724289
ENSMUSG00000029387.11_124717229_124734904_1	chr5	+	1807	13	FSM	ENSMUSG00000029387.11	ENSMUST00000031333.4	2672	13	26	839	0	254	multi-exon	FALSE	canonical	3	570	junction_1	79.1684210331928	900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATTTTCCTTAGAGTGTT	NA	False	NA	19	True	AATAAA	-20	NA	124717228	124734904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124717265_124720510_124720591_124721996_124722104_124722198_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543_124730598_124732825_124732895_124733615_124733752_124733865_124733903_124733980
ENSMUSG00000029388.15_124708716_124717138_1	chr5	-	1512	9	NNC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	0	-440	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	295.103795299213	2037	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACGGTATTGCCTCTCTA	NA	False	NA	-5	True	AATAAA	-17	NA	124717138	124708715	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_124709418_124709823_124709950_124711140_124711217_124711753_124711818_124712660_124712774_124714860_124714978_124715078_124715216_124716499_124716602_124717063
ENSMUSG00000029388.15_124708716_124717138_2	chr5	-	1380	8	NIC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	0	-440	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	286.265967382839	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACGGTATTGCCTCTCTA	NA	False	NA	-5	True	AATAAA	-17	NA	124717138	124708715	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660_124712774_124714860_124714978_124716499_124716602_124717063
ENSMUSG00000029388.15_124708716_124717138_3	chr5	-	1517	9	FSM	ENSMUSG00000029388.15	ENSMUST00000031334.15	2013	9	56	440	0	-440	multi-exon	FALSE	canonical	0	0	junction_4	226.339761199839	2066	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACGGTATTGCCTCTCTA	NA	False	NA	-5	True	AATAAA	-17	NA	124717138	124708715	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660_124712774_124714860_124714978_124715078_124715216_124716499_124716602_124717063
ENSMUSG00000029389.18_124690959_124707036_1	chr5	+	2080	14	FSM	ENSMUSG00000029389.18	ENSMUST00000071057.14	2799	14	32	687	0	-687	multi-exon	FALSE	canonical	3	73	junction_5	12.5669803088427	224	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTGTGTAATTCCTAT	NA	False	NA	2	True	NA	NA	NA	124690958	124707036	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124691103_124692605_124692657_124692733_124692821_124694819_124694912_124695024_124695088_124696084_124696235_124697190_124697381_124698780_124698864_124699968_124700101_124700652_124700746_124704443_124704559_124704896_124705066_124705897_124706191_124706618
ENSMUSG00000029390.14_124678865_124688564_1	chr5	+	1962	4	FSM	ENSMUSG00000029390.14	ENSMUST00000060226.11	2074	4	107	5	107	5	multi-exon	FALSE	canonical	3	3477	junction_2	89.3395520223577	942	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATTTTGTGTTTTATAT	NA	False	NA	7	True	AATAAA	-17	NA	124678864	124688564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124679105_124681034_124681228_124684958_124685067_124687143
ENSMUSG00000029392.13_124631143_124653659_1	chr5	-	1341	5	ISM	ENSMUSG00000029392.13	ENSMUST00000062153.12	2249	7	15795	0	-853	0	3prime_fragment	FALSE	canonical	3	33	junction_4	4.32290411644765	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTCCTGTGTGCCTTT	NA	False	NA	2	True	NA	NA	NA	124653659	124631142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_124631908_124639902_124639996_124641617_124641797_124652581_124652807_124653580
ENSMUSG00000029392.13_124652484_124653659_1	chr5	-	402	2	ISM	ENSMUSG00000029392.13	ENSMUST00000062153.12	2249	7	15795	21341	-853	-20757	internal_fragment	FALSE	canonical	3	33	junction_1	0	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAATGTGTTTTTGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	124653659	124652483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_124652807_124653580
ENSMUSG00000029397.16_92096860_92110610_1	chr5	-	1553	9	FSM	ENSMUSG00000029397.16	ENSMUST00000031345.15	1967	9	317	97	-16	0	multi-exon	FALSE	canonical	3	292	junction_5	17.5926120857592	853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTGTTTTACAGACTT	1652	False	NA	NA	False	AATAAA	-21	NA	92110610	92096859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92097724_92099679_92099801_92100799_92100827_92100911_92100971_92101072_92101118_92103393_92103473_92105393_92105510_92105736_92105857_92110488
ENSMUSG00000029397.16_92097144_92110610_1	chr5	-	1269	9	FSM	ENSMUSG00000029397.16	ENSMUST00000031345.15	1967	9	317	381	-16	-284	multi-exon	FALSE	canonical	3	292	junction_5	17.5926120857592	790	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTTTCTTTTCTCTCT	1652	False	NA	0	True	ATTAAA	-24	NA	92110610	92097143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92097724_92099679_92099801_92100799_92100827_92100911_92100971_92101072_92101118_92103393_92103473_92105393_92105510_92105736_92105857_92110488
ENSMUSG00000029397.16_92097144_92110927_1	chr5	-	1586	9	FSM	ENSMUSG00000029397.16	ENSMUST00000031345.15	1967	9	0	381	0	-284	multi-exon	FALSE	canonical	3	292	junction_5	17.5926120857592	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTTTCTTTTCTCTCT	1335	False	NA	0	True	ATTAAA	-24	NA	92110927	92097143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92097724_92099679_92099801_92100799_92100827_92100911_92100971_92101072_92101118_92103393_92103473_92105393_92105510_92105736_92105857_92110488
ENSMUSG00000029397.16_92110749_92118693_1	chr5	-	1712	4	NNC	ENSMUSG00000029397.16	novel	1967	9	NA	NA	-7766	-1209	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	67	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGATGCTGCAGATCACGTG	NA	False	NA	NA	False	NA	NA	NA	92118693	92110748	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_92110835_92112954_92113164_92114310_92114434_92117399
ENSMUSG00000029402.9_124621265_124629388_1	chr5	+	1248	2	FSM	ENSMUSG00000029402.9	ENSMUST00000031349.9	1115	2	68	-201	0	201	multi-exon	FALSE	canonical	3	127	junction_1	0	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTGTCTTTTCCATTTT	2288	False	NA	NA	False	NA	NA	NA	124621264	124629388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124621310_124628185
ENSMUSG00000029404.16_124254185_124256259_1	chr5	+	1254	4	ISM	ENSMUSG00000029404.16	ENSMUST00000031351.11	1192	5	23	0	0	0	intron_retention	FALSE	canonical	3	507	junction_1	53.5806764504601	2031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	24	True	ATTAAA	-17	NA	124254184	124256259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_124254675_124254977_124255257_124255333_124255452_124255892
ENSMUSG00000029404.16_124254185_124256259_2	chr5	+	1108	5	NNC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	22	junction_1	256.087265399902	1956	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	24	True	ATTAAA	-17	NA	124254184	124256259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_124254675_124255038_124255257_124255333_124255452_124255892_124255963_124256047
ENSMUSG00000029404.16_124254185_124256259_3	chr5	+	980	6	NIC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	229.659399981799	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	24	True	ATTAAA	-17	NA	124254184	124256259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_124254308_124254496_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
ENSMUSG00000029405.17_92201576_92231576_1	chr5	-	2726	12	FSM	ENSMUSG00000029405.17	ENSMUST00000202258.4	1884	12	-59	-783	0	0	multi-exon	FALSE	canonical	3	524	junction_5	444.293682188997	2061	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGTTCTTCAGTTAAC	NA	False	NA	-9	True	AGTAAA	-17	NA	92231576	92201575	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
ENSMUSG00000029405.17_92202229_92231576_1	chr5	-	2073	12	FSM	ENSMUSG00000029405.17	ENSMUST00000202258.4	1884	12	-59	-130	0	130	multi-exon	FALSE	canonical	3	524	junction_5	444.293682188997	1789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGAATCTTGCCTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	92231576	92202228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
ENSMUSG00000029405.17_92202359_92231196_1	chr5	-	1720	11	NNC	ENSMUSG00000029405.17	novel	1884	12	NA	NA	-74	0	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_10	510.187455745435	731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGCCCACTGAGTTCA	NA	False	NA	NA	False	AATGAA	-19	NA	92231196	92202358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231131
ENSMUSG00000029405.17_92202359_92231372_1	chr5	-	1933	12	FSM	ENSMUSG00000029405.17	ENSMUST00000169094.8	2716	12	0	783	0	0	multi-exon	FALSE	canonical	3	261	junction_11	559.822935407495	878	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGCCCACTGAGTTCA	NA	False	NA	NA	False	AATGAA	-19	NA	92231372	92202358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
ENSMUSG00000029405.17_92202359_92231372_2	chr5	-	1834	11	FSM	ENSMUSG00000029405.17	ENSMUST00000167918.8	4232	11	44	2354	0	0	multi-exon	FALSE	canonical	3	261	junction_10	456.056180749697	935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGCCCACTGAGTTCA	NA	False	NA	NA	False	AATGAA	-19	NA	92231372	92202358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
ENSMUSG00000029413.15_92406107_92426024_1	chr5	-	1820	11	FSM	ENSMUSG00000029413.15	ENSMUST00000113102.10	2414	11	5	589	0	185	multi-exon	FALSE	canonical	3	29	junction_5	5.44885309033011	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTAGCTGTGAAGAGAAAA	9203	False	NA	NA	False	AATAAA	-17	NA	92426024	92406106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92406803_92407412_92407491_92409210_92409240_92410367_92410435_92411268_92411332_92411449_92411623_92412939_92413017_92415900_92415992_92420302_92420430_92424777_92424943_92425770
ENSMUSG00000029414.12_123887789_123892467_1	chr5	+	676	2	NNC	ENSMUSG00000029414.12	novel	6961	64	NA	NA	0	344	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_1	0	609	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTACCTGCTGTCTGTTTG	NA	False	NA	NA	False	NA	NA	NA	123887788	123892467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_123887888_123891890
ENSMUSG00000029422.16_123866493_123887444_1	chr5	-	2310	12	NIC	ENSMUSG00000029422.16	novel	2344	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_7	199.263561501216	1825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTCCATTGTATGCTAT	4354	False	NA	NA	False	AATAAA	-11	NA	123887444	123866492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
ENSMUSG00000029422.16_123866787_123887444_1	chr5	-	1845	10	FSM	ENSMUSG00000029422.16	ENSMUST00000182309.8	1595	10	33	-283	0	0	multi-exon	FALSE	canonical	3	403	junction_7	46.2523939987681	1187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGGTGTTAATTTAAG	4354	False	NA	-8	True	AATAAA	-13	NA	123887444	123866786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123887351
ENSMUSG00000029422.16_123866787_123887444_2	chr5	-	1840	10	NNC	ENSMUSG00000029422.16	novel	1595	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	161.648452582208	1078	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGGTGTTAATTTAAG	4354	False	NA	-8	True	AATAAA	-13	NA	123887444	123866786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878921_123881700_123881742_123883017_123883175_123887351
ENSMUSG00000029422.16_123866787_123887444_3	chr5	-	2016	12	NIC	ENSMUSG00000029422.16	novel	2344	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_7	199.263561501216	756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGGTGTTAATTTAAG	4354	False	NA	-8	True	AATAAA	-13	NA	123887444	123866786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
ENSMUSG00000029426.9_92591850_92653496_1	chr5	-	2021	12	FSM	ENSMUSG00000029426.9	ENSMUST00000031377.9	4698	12	0	2677	0	-2677	multi-exon	TRUE	canonical	3	99	junction_7	16.1496104397404	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTGGTTGGGCCCTGG	NA	False	NA	-6	True	AATAAA	-14	NA	92653496	92591849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92592144_92594162_92594322_92596403_92596456_92597729_92597804_92599205_92599325_92601898_92602069_92602590_92602711_92607900_92607993_92608612_92608802_92609795_92609944_92633055_92633214_92653050
ENSMUSG00000029427.12_123837862_123859011_1	chr5	-	2693	14	FSM	ENSMUSG00000029427.12	ENSMUST00000031376.12	4286	14	96	1497	-86	0	multi-exon	FALSE	non_canonical	2	263	junction_13	50.4357344906314	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAGGTTTAATAAATTAG	6493	False	NA	-38	True	AATAAA	-20	NA	123859011	123837861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_123839186_123840625_123840744_123841055_123841143_123842585_123842705_123845331_123845475_123846054_123846198_123846634_123846696_123847257_123847324_123847444_123847549_123852128_123852207_123852687_123852794_123855046_123855122_123857554_123857596_123858783
ENSMUSG00000029430.14_129097266_129100230_1	chr5	+	1082	7	NNC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	0	-1157	at_least_one_novel_splicesite	FALSE	canonical	3	335	junction_4	5449.54944365944	53353	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	475	False	NA	NA	False	AATAAA	-23	NA	129097265	129100230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099071_129099255_129099438_129099610_129099837
ENSMUSG00000029430.14_129097336_129100230_1	chr5	+	1011	6	NNC	ENSMUSG00000029430.14	novel	2423	6	NA	NA	0	-1157	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6067.5958006446	1474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	545	False	NA	NA	False	AATAAA	-23	NA	129097335	129100230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129097384_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ENSMUSG00000029430.14_129097336_129100230_10	chr5	+	1008	7	NNC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	0	-1157	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	5595.79242725183	2901	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	545	False	NA	NA	False	AATAAA	-23	NA	129097335	129100230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099846
ENSMUSG00000029430.14_129097336_129100230_11	chr5	+	990	6	NNC	ENSMUSG00000029430.14	novel	2423	6	NA	NA	0	-1157	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6067.5958006446	1467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	545	False	NA	NA	False	AATAAA	-23	NA	129097335	129100230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129097363_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ENSMUSG00000029430.14_129097336_129100230_12	chr5	+	1035	7	NNC	ENSMUSG00000029430.14	novel	2423	6	NA	NA	0	-1157	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	7156.6726614631	10438	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	545	False	NA	NA	False	AATAAA	-23	NA	129097335	129100230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129097343_129097572_129097639_129097747_129097833_129097929_129098056_129099067_129099255_129099438_129099610_129099837
ENSMUSG00000029430.14_129097336_129100230_2	chr5	+	982	6	NNC	ENSMUSG00000029430.14	novel	2423	6	NA	NA	0	-1157	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	7379.15839645688	1346	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	545	False	NA	NA	False	AATAAA	-23	NA	129097335	129100230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129097363_129097747_129097825_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ENSMUSG00000029430.14_129097336_129100230_3	chr5	+	1036	7	NNC	ENSMUSG00000029430.14	novel	2423	6	NA	NA	0	-1157	at_least_one_novel_splicesite	FALSE	canonical	3	123	junction_1	5645.42574912547	37175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	545	False	NA	NA	False	AATAAA	-23	NA	129097335	129100230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129097343_129097572_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ENSMUSG00000029430.14_129097336_129100230_4	chr5	+	998	7	NNC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	0	-1157	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_6	5592.53351701077	1536	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	545	False	NA	NA	False	AATAAA	-23	NA	129097335	129100230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099591_129099837
ENSMUSG00000029430.14_129097336_129100230_5	chr5	+	1001	6	NNC	ENSMUSG00000029430.14	novel	2423	6	NA	NA	0	-1157	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6067.5958006446	2115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	545	False	NA	NA	False	AATAAA	-23	NA	129097335	129100230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129097363_129097736_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ENSMUSG00000029430.14_129097336_129100230_6	chr5	+	1006	6	NNC	ENSMUSG00000029430.14	novel	2423	6	NA	NA	0	-1157	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6067.5958006446	2088	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	545	False	NA	NA	False	AATAAA	-23	NA	129097335	129100230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129097343_129097711_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ENSMUSG00000029430.14_129097336_129100230_7	chr5	+	974	7	NNC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	0	-1157	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	5562.02402208245	1104	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	545	False	NA	NA	False	AATAAA	-23	NA	129097335	129100230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129097343_129097591_129097639_129097747_129097790_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ENSMUSG00000029430.14_129097336_129100230_8	chr5	+	1022	6	NNC	ENSMUSG00000029430.14	novel	2423	6	NA	NA	0	-1157	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6067.5958006446	2147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	545	False	NA	NA	False	AATAAA	-23	NA	129097335	129100230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129097343_129097695_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ENSMUSG00000029430.14_129097336_129100230_9	chr5	+	1014	7	NNC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	0	-1157	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	5595.43032055822	5614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	545	False	NA	NA	False	AATAAA	-23	NA	129097335	129100230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099616_129099846
ENSMUSG00000029430.14_129097336_129101387_1	chr5	+	2174	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	203	0	0	0	multi-exon	FALSE	canonical	3	11744	junction_1	1335.32560531962	38522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGAGTCATCTCTAGT	545	False	NA	21	True	AATATA	-23	NA	129097335	129101387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ENSMUSG00000029430.14_129097590_129100230_1	chr5	+	1007	6	NNC	ENSMUSG00000029430.14	novel	2423	6	NA	NA	254	-1157	at_least_one_novel_splicesite	FALSE	canonical	3	335	junction_3	5966.06459904685	2790	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	799	False	NA	NA	False	AATAAA	-23	NA	129097589	129100230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129097639_129097747_129097833_129097929_129098056_129099071_129099255_129099438_129099610_129099837
ENSMUSG00000029432.13_129802127_129834266_1	chr5	+	982	10	NNC	ENSMUSG00000029432.13	novel	2112	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	117.553245093867	1291	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTCACCGAGTGGAAAGCA	7767	False	NA	NA	False	NA	NA	NA	129802126	129834266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129802286_129816535_129816676_129816781_129816828_129821773_129821864_129822279_129822351_129823390_129823532_129825065_129825098_129830289_129830385_129831905_129831990_129834142
ENSMUSG00000029432.13_129802163_129834266_1	chr5	+	951	10	FSM	ENSMUSG00000029432.13	ENSMUST00000086046.10	2112	10	36	1125	0	0	multi-exon	FALSE	canonical	3	290	junction_9	37.917389085507	1399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTCACCGAGTGGAAAGCA	7803	False	NA	NA	False	NA	NA	NA	129802162	129834266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129802286_129816535_129816676_129816781_129816828_129821768_129821864_129822279_129822351_129823390_129823532_129825065_129825098_129830289_129830385_129831905_129831990_129834142
ENSMUSG00000029432.13_129802163_129834266_2	chr5	+	947	9	NNC	ENSMUSG00000029432.13	novel	1600	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	126.096131483087	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTCACCGAGTGGAAAGCA	7803	False	NA	NA	False	NA	NA	NA	129802162	129834266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129802286_129816535_129816676_129816781_129816828_129821768_129821864_129822279_129822351_129823390_129823560_129830289_129830385_129831905_129831990_129834142
ENSMUSG00000029433.17_123649967_123662196_1	chr5	-	1334	6	FSM	ENSMUSG00000029433.17	ENSMUST00000111587.10	1576	6	43	199	0	-199	multi-exon	FALSE	canonical	3	603	junction_3	53.1902246658162	1478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGAGTCTTCAGGCTGTC	8965	False	NA	-9	True	ATTAAA	-20	NA	123662196	123649966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_123650771_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
ENSMUSG00000029433.17_123650145_123662196_1	chr5	-	1156	6	FSM	ENSMUSG00000029433.17	ENSMUST00000111587.10	1576	6	43	377	0	221	multi-exon	FALSE	canonical	3	603	junction_3	53.1902246658162	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCCTGTGAGCACAGCTC	8965	False	NA	54	True	GGGGCT	-39	NA	123662196	123650144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_123650771_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
ENSMUSG00000029434.13_123668807_123711069_1	chr5	-	2118	13	FSM	ENSMUSG00000029434.13	ENSMUST00000031388.13	4235	13	32	2085	-27	-2085	multi-exon	TRUE	canonical	3	140	junction_1	30.3840007240653	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAAGTCTCAAGTCTTC	9999	False	NA	-5	True	NA	NA	NA	123711069	123668806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_123669285_123669887_123670057_123671920_123672059_123673276_123673415_123674595_123674664_123685064_123685192_123696676_123696877_123701488_123701664_123703021_123703139_123707482_123707670_123708917_123709046_123709539_123709606_123710942
ENSMUSG00000029434.13_123692828_123711069_1	chr5	-	1246	8	NIC	ENSMUSG00000029434.13	novel	532	6	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	74.1113337885533	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGGTGTGTTCCTATGTAA	9999	False	NA	NA	False	ATTAAA	-18	NA	123711069	123692827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_123693074_123696676_123696877_123701488_123701664_123703021_123703139_123707482_123707670_123708917_123709046_123709539_123709606_123710942
ENSMUSG00000029438.10_123482511_123509460_1	chr5	+	1123	6	FSM	ENSMUSG00000029438.10	ENSMUST00000031391.9	4718	6	0	3595	0	-2685	multi-exon	FALSE	canonical	3	24	junction_2	4.53431361950185	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCCTCCCCTCACTTCTC	NA	False	NA	NA	False	NA	NA	NA	123482510	123509460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_123482785_123489929_123490012_123494003_123494101_123499253_123499422_123507395_123507518_123509080
ENSMUSG00000029439.15_129578310_129581528_1	chr5	+	723	3	FSM	ENSMUSG00000029439.15	ENSMUST00000200500.2	437	3	-203	-83	0	83	multi-exon	FALSE	canonical	0	0	junction_2	33	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCCTTAGTGATCTTTAA	NA	False	NA	NA	False	ATTAAA	-16	NA	129578309	129581528	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129578661_129581046_129581217_129581326
ENSMUSG00000029440.16_123366321_123386590_1	chr5	+	822	5	NIC	ENSMUSG00000029440.16	novel	2597	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	81.8183964643649	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACGTCTTGTGCAAATTA	NA	False	NA	17	True	ATTAAA	-18	NA	123366320	123386590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_123366508_123377604_123377814_123379894_123379997_123384256_123384346_123386355
ENSMUSG00000029440.16_123366321_123386590_2	chr5	+	925	6	FSM	ENSMUSG00000029440.16	ENSMUST00000100729.9	2597	6	68	1604	0	0	multi-exon	FALSE	canonical	3	158	junction_2	18.6868938028769	982	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACGTCTTGTGCAAATTA	NA	False	NA	17	True	ATTAAA	-18	NA	123366320	123386590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_123366508_123372656_123372760_123377604_123377814_123379894_123379997_123384256_123384346_123386355
ENSMUSG00000029440.16_123366321_123386590_3	chr5	+	918	6	NNC	ENSMUSG00000029440.16	novel	2597	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	79.0098728008089	993	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACGTCTTGTGCAAATTA	NA	False	NA	17	True	ATTAAA	-18	NA	123366320	123386590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_123366508_123372663_123372760_123377604_123377814_123379894_123379997_123384256_123384346_123386355
ENSMUSG00000029440.16_123366321_123387025_1	chr5	+	1257	5	NIC	ENSMUSG00000029440.16	novel	2597	6	NA	NA	0	435	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	81.8183964643649	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGCTGTCAGTATATTC	NA	False	NA	23	True	NA	NA	NA	123366320	123387025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_123366508_123377604_123377814_123379894_123379997_123384256_123384346_123386355
ENSMUSG00000029440.16_123366321_123387025_2	chr5	+	1360	6	FSM	ENSMUSG00000029440.16	ENSMUST00000100729.9	2597	6	68	1169	0	435	multi-exon	FALSE	canonical	3	158	junction_2	18.6868938028769	1379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGCTGTCAGTATATTC	NA	False	NA	23	True	NA	NA	NA	123366320	123387025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_123366508_123372656_123372760_123377604_123377814_123379894_123379997_123384256_123384346_123386355
ENSMUSG00000029446.15_129842622_129856237_1	chr5	-	1080	6	ISM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	8276	0	0	0	3prime_fragment	FALSE	canonical	3	674	junction_1	180.962537559573	10667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCAGTAGTTTTAAGTGA	NA	False	NA	-2	True	ATTAAA	-22	NA	129856237	129842621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_129842963_129843482_129843632_129846302_129846449_129847669_129847805_129848539_129848697_129856085
ENSMUSG00000029446.15_129842622_129856292_1	chr5	-	1135	6	ISM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	8221	0	-15	0	3prime_fragment	FALSE	canonical	3	674	junction_1	180.962537559573	11183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCAGTAGTTTTAAGTGA	NA	False	NA	-2	True	ATTAAA	-22	NA	129856292	129842621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_129842963_129843482_129843632_129846302_129846449_129847669_129847805_129848539_129848697_129856085
ENSMUSG00000029446.15_129842622_129864218_1	chr5	-	1438	8	FSM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	295	0	0	0	multi-exon	FALSE	canonical	3	66	junction_7	460.03695503731	11468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCAGTAGTTTTAAGTGA	9052	False	NA	-2	True	ATTAAA	-22	NA	129864218	129842621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_129842963_129843482_129843632_129846302_129846449_129847669_129847805_129848539_129848697_129856085_129856313_129856425_129856509_129864018
ENSMUSG00000029446.15_129864457_129874921_1	chr5	-	1902	14	NIC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10408	-8012	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3833	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTCTTCTCGAAAAGTCTT	4145	False	NA	NA	False	NA	NA	NA	129874921	129864456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
ENSMUSG00000029446.15_129864457_129875212_1	chr5	-	2187	14	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10699	-8012	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	12338	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTCTTCTCGAAAAGTCTT	3854	False	NA	NA	False	NA	NA	NA	129875212	129864456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871420_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
ENSMUSG00000029447.14_129864457_129874782_1	chr5	+	1763	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	395	430	395	-430	multi-exon	TRUE	canonical	3	3618	junction_3	465.957308149311	2423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCAAATTATACTGTAAAAT	NA	False	NA	3	True	AAGAAA	-19	NA	129864456	129874782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
ENSMUSG00000029447.14_129864457_129875212_1	chr5	+	2193	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	395	0	395	0	multi-exon	FALSE	canonical	3	3618	junction_3	465.957308149311	12395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACTTGAAATGACTGAAA	NA	False	NA	38	True	AATAAA	-30	NA	129864456	129875212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
ENSMUSG00000029454.16_121663115_121667044_1	chr5	-	658	5	ISM	ENSMUSG00000029454.16	ENSMUST00000111781.8	1296	11	8740	-4	-1728	0	3prime_fragment	FALSE	canonical	3	155	junction_2	19.6134520164096	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTGCTTAAAGTTGCTA	6944	False	NA	-10	True	AATAAA	-16	NA	121667044	121663114	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_121663303_121663725_121663831_121664801_121664924_121665153_121665285_121666932
ENSMUSG00000029455.15_121705769_121731649_1	chr5	-	1950	13	FSM	ENSMUSG00000029455.15	ENSMUST00000031411.15	3867	13	238	1679	-4	172	multi-exon	TRUE	canonical	3	476	junction_10	93.9036148872283	6660	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACGGGGTCAGTTCTCTA	NA	False	NA	-26	True	AATAAA	-16	NA	121731649	121705768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_121706087_121706988_121707104_121708666_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
ENSMUSG00000029461.18_100355842_100485404_1	chr7	+	1177	8	FSM	ENSMUSG00000029461.18	ENSMUST00000207875.2	4077	8	-85	2985	0	0	multi-exon	TRUE	canonical	3	35	junction_2	3.48173074484398	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGAGCCTCCCCTCGTGCC	NA	False	NA	9	True	NA	NA	NA	100355841	100485404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_100356101_100436010_100436099_100462126_100462208_100473338_100473465_100480534_100480678_100483215_100483391_100484533_100484665_100485230
ENSMUSG00000029462.19_122492469_122501060_1	chr5	+	702	4	NNC	ENSMUSG00000029462.19	novel	2716	4	NA	NA	0	-214	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1045.8626423516	8182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTTGTATCACTTTTAT	716	False	NA	14	True	ATTAAA	-14	NA	122492468	122501060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_122492550_122498075_122498268_122500098_122500335_122500867
ENSMUSG00000029462.19_122492469_122501350_1	chr5	+	982	4	FSM	ENSMUSG00000029462.19	ENSMUST00000155671.8	2716	4	37	1697	0	1	multi-exon	FALSE	canonical	3	1453	junction_1	367.656844837078	15633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTTCTTGAAAACCTGTG	716	False	NA	18	True	AATAAA	-18	NA	122492468	122501350	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_122492540_122498075_122498268_122500098_122500335_122500867
ENSMUSG00000029463.6_122502643_122510427_1	chr5	-	1049	7	NNC	ENSMUSG00000029463.6	novel	1388	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_6	99.0673171804573	276	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAATTTTAAATTATCTTT	NA	False	NA	-20	True	ATTAAA	-21	NA	122510427	122502642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_122502983_122504376_122504460_122505410_122505583_122505661_122505792_122507579_122507702_122508577_122508637_122510284
ENSMUSG00000029463.6_122502643_122510427_2	chr5	-	1394	7	NNC	ENSMUSG00000029463.6	novel	1388	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	102.787266829225	1348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAATTTTAAATTATCTTT	NA	False	NA	-20	True	ATTAAA	-21	NA	122510427	122502642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_122502983_122504376_122504460_122505410_122505583_122505655_122505792_122507579_122507702_122508577_122508637_122509945
ENSMUSG00000029466.12_122560544_122579866_1	chr5	+	1968	10	FSM	ENSMUSG00000029466.12	ENSMUST00000119792.2	3599	10	0	1631	0	0	multi-exon	FALSE	canonical	3	226	junction_7	31.1071426040332	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGCTTTTACCTGTCATC	NA	False	NA	NA	False	ATTAAA	-23	NA	122560543	122579866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122578148_122578374_122579352
ENSMUSG00000029466.12_122560544_122582515_1	chr5	+	2254	11	FSM	ENSMUSG00000029466.12	ENSMUST00000031422.10	2751	11	37	460	0	-460	multi-exon	FALSE	canonical	3	226	junction_7	29.6310647800581	2193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTTTGAGACTCTTCCT	NA	False	NA	28	True	AATAAA	-24	NA	122560543	122582515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122578148_122578374_122579352_122579504_122581866
ENSMUSG00000029469.15_122688562_122752582_1	chr5	-	2656	19	FSM	ENSMUSG00000029469.15	ENSMUST00000031426.14	2950	19	-1	295	-1	-291	multi-exon	FALSE	canonical	3	41	junction_3	9.90510530540242	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACATAGTTGTGTCAAGAT	1242	False	NA	-4	True	AATAAA	-36	NA	122752582	122688561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_122689267_122693559_122693606_122697217_122697304_122697759_122697832_122698721_122698809_122705323_122705414_122706973_122707103_122710702_122710853_122729142_122729290_122731112_122731209_122732587_122732752_122738502_122738588_122740330_122740442_122740747_122740814_122745030_122745121_122747235_122747417_122748140_122748245_122749005_122749171_122752500
ENSMUSG00000029470.16_122845633_122867107_1	chr5	+	1982	12	FSM	ENSMUSG00000029470.16	ENSMUST00000031429.14	2702	12	26	694	0	0	multi-exon	FALSE	canonical	3	87	junction_5	9.63207451716048	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCCTTGTCTGTGCTGCCT	NA	False	NA	15	True	ATTAAA	-20	NA	122845632	122867107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122862656_122862738_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
ENSMUSG00000029472.14_122925790_122926401_1	chr5	-	234	2	NNC	ENSMUSG00000029472.14	novel	2413	17	NA	NA	5191	0	at_least_one_novel_splicesite	FALSE	canonical	1	24	junction_1	0	149	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGAAGTGGGTTTTTTT	NA	False	NA	-23	True	AATAAA	-16	NA	122926401	122925789	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_122925987_122926364
ENSMUSG00000029472.14_122925790_122959343_1	chr5	-	2426	17	NNC	ENSMUSG00000029472.14	novel	2413	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	565.323189506454	10845	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGAAGTGGGTTTTTTT	NA	False	NA	-23	True	AATAAA	-16	NA	122959343	122925789	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952672_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ENSMUSG00000029472.14_122925790_122959343_2	chr5	-	2389	17	NNC	ENSMUSG00000029472.14	novel	2413	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	594.633155688236	10470	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGAAGTGGGTTTTTTT	NA	False	NA	-23	True	AATAAA	-16	NA	122959343	122925789	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952674_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ENSMUSG00000029472.14_122925790_122959343_3	chr5	-	2389	17	NNC	ENSMUSG00000029472.14	novel	2413	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	594.633155688236	10172	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGAAGTGGGTTTTTTT	NA	False	NA	-23	True	AATAAA	-16	NA	122959343	122925789	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955888_122956068_122956916_122957027_122957670_122957751_122959042
ENSMUSG00000029474.8_122988220_123007008_1	chr5	+	1985	6	FSM	ENSMUSG00000029474.8	ENSMUST00000031434.8	4440	6	109	2346	0	-2346	multi-exon	FALSE	canonical	3	187	junction_1	16.3389106124001	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTAGTTTAATATTGTT	623	False	NA	9	True	AATAAA	-16	NA	122988219	123007008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_122988362_122999751_122999971_123002049_123002458_123004864_123004970_123005182_123005385_123006099
ENSMUSG00000029474.8_122988220_123007008_2	chr5	+	1766	5	NIC	ENSMUSG00000029474.8	novel	4440	6	NA	NA	0	-2346	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	85.4005269304587	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTAGTTTAATATTGTT	623	False	NA	9	True	AATAAA	-16	NA	122988219	123007008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_122988362_123002049_123002458_123004864_123004970_123005182_123005385_123006099
ENSMUSG00000029486.14_96358003_96412275_1	chr5	+	1102	9	NNC	ENSMUSG00000029486.14	novel	3431	9	NA	NA	0	-2293	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	239.064812080323	1509	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGCTCCTCATGTTTTC	NA	False	NA	22	True	TATAAA	-16	NA	96358002	96412275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_96358053_96361645_96361770_96371629_96371892_96374150_96374228_96375538_96375611_96379539_96379652_96386697_96386805_96409920_96410003_96412059
ENSMUSG00000029486.14_96358003_96412275_2	chr5	+	1109	9	FSM	ENSMUSG00000029486.14	ENSMUST00000036437.13	3431	9	29	2293	0	-2293	multi-exon	FALSE	canonical	3	666	junction_1	44.6738178355063	2252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGCTCCTCATGTTTTC	NA	False	NA	22	True	TATAAA	-16	NA	96358002	96412275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_96358053_96361645_96361770_96371629_96371892_96374143_96374228_96375538_96375611_96379539_96379652_96386697_96386805_96409920_96410003_96412059
ENSMUSG00000029486.14_96358003_96412275_3	chr5	+	985	8	NIC	ENSMUSG00000029486.14	novel	3431	9	NA	NA	0	-2293	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	252.613684248078	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGCTCCTCATGTTTTC	NA	False	NA	22	True	TATAAA	-16	NA	96358002	96412275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_96358053_96371629_96371892_96374143_96374228_96375538_96375611_96379539_96379652_96386697_96386805_96409920_96410003_96412059
ENSMUSG00000029486.14_96358003_96412275_4	chr5	+	1100	9	NNC	ENSMUSG00000029486.14	novel	3431	9	NA	NA	0	-2293	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	240.349452620554	816	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGCTCCTCATGTTTTC	NA	False	NA	22	True	TATAAA	-16	NA	96358002	96412275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_96358053_96361645_96361770_96371638_96371892_96374143_96374228_96375538_96375611_96379539_96379652_96386697_96386805_96409920_96410003_96412059
ENSMUSG00000029499.12_110422161_110433912_1	chr5	-	888	5	FSM	ENSMUSG00000029499.12	ENSMUST00000031472.12	1041	5	140	13	-25	0	multi-exon	FALSE	canonical	3	476	junction_4	29.6004645233821	1163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTAATGGGTGTGGTT	NA	False	NA	-9	True	AATAAA	-15	NA	110433912	110422160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_110422495_110425520_110425641_110429062_110429226_110431511_110431620_110433749
ENSMUSG00000029499.12_110422161_110434069_1	chr5	-	1067	5	NNC	ENSMUSG00000029499.12	novel	1041	5	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_3	204.212511859582	3062	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTAATGGGTGTGGTT	NA	False	NA	-9	True	AATAAA	-15	NA	110434069	110422160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_110422495_110425520_110425641_110429062_110429248_110431511_110431620_110433749
ENSMUSG00000029499.12_110422161_110434069_2	chr5	-	882	4	FSM	ENSMUSG00000029499.12	ENSMUST00000155266.2	700	4	-182	0	-17	0	multi-exon	FALSE	canonical	3	34	junction_2	226.6686274425	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTAATGGGTGTGGTT	NA	False	NA	-9	True	AATAAA	-15	NA	110434069	110422160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_110422495_110425520_110425641_110431511_110431620_110433749
ENSMUSG00000029499.12_110431214_110434052_1	chr5	-	709	2	FSM	ENSMUSG00000029499.12	ENSMUST00000126882.2	466	2	-67	-176	0	176	multi-exon	FALSE	canonical	3	476	junction_1	0	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATAATTGTTTAAGA	NA	False	NA	NA	False	ATTAAA	-7	NA	110434052	110431213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_110431620_110433749
ENSMUSG00000029504.6_110801317_110806062_1	chr5	+	2546	15	FSM	ENSMUSG00000029504.6	ENSMUST00000031478.6	4846	15	0	2300	0	325	multi-exon	TRUE	canonical	3	94	junction_7	18.2382195693885	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACAAATTCCCGATAGCT	NA	False	NA	5	True	AATAAA	-16	NA	110801316	110806062	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_110801655_110801743_110801878_110802333_110802485_110802734_110802881_110802957_110803030_110803172_110803280_110803430_110803540_110803625_110803772_110803905_110804099_110804196_110804313_110804390_110804508_110804681_110804784_110804953_110805018_110805116_110805252_110805446
ENSMUSG00000029507.17_110921533_110928462_2	chr5	-	1676	5	NIC	ENSMUSG00000029507.17	novel	1814	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	214.321020900891	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110928462	110921532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_110921846_110922387_110923080_110923401_110923505_110927552_110927764_110928105
ENSMUSG00000029516.20_115983339_115992749_1	chr5	+	434	4	NIC	ENSMUSG00000029516.20	novel	571	6	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	2	7	junction_3	23.9304547943968	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGTGTTTCAGTGTGGG	8483	False	NA	NA	False	NA	NA	NA	115983338	115992749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_115983361_115984405_115984526_115989210_115989353_115992599
ENSMUSG00000029518.16_115781665_115784063_1	chr5	+	466	2	ISM	ENSMUSG00000029518.16	ENSMUST00000138885.2	966	6	11465	115	11465	-115	3prime_fragment	FALSE	canonical	3	206	junction_1	0	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTGAGTGGACTGATTAAC	NA	False	NA	NA	False	NA	NA	NA	115781664	115784063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_115781759_115783691
ENSMUSG00000029518.16_115781665_115785217_1	chr5	+	1620	2	ISM	ENSMUSG00000029518.16	ENSMUST00000031492.15	2820	6	11698	578	11465	-578	3prime_fragment	FALSE	canonical	3	206	junction_1	0	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTCTCTCCACTTGTCCA	NA	False	NA	17	True	AATAAA	-19	NA	115781664	115785217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_115781759_115783691
ENSMUSG00000029521.8_110987845_111022011_1	chr5	+	2427	16	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	57	junction_1	67.6591457232502	832	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTTGTGGCTTTTC	9178	False	NA	31	True	AAAACA	-7	NA	110987844	111022011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
ENSMUSG00000029522.13_115603166_115612781_1	chr5	+	634	4	NNC	ENSMUSG00000029522.13	novel	557	4	NA	NA	-1155	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_2	947.073738769409	1156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGTGATTGTTATCTC	NA	False	NA	30	True	AATAAA	-21	NA	115603165	115612781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_115603279_115604200_115604380_115610051_115610180_115612567
ENSMUSG00000029522.13_115603166_115612781_2	chr5	+	764	5	NNC	ENSMUSG00000029522.13	novel	557	4	NA	NA	-1155	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	919.504588079907	5594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGTGATTGTTATCTC	NA	False	NA	30	True	AATAAA	-21	NA	115603165	115612781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_115603279_115604230_115604380_115608840_115609001_115610051_115610180_115612567
ENSMUSG00000029522.13_115603166_115612781_3	chr5	+	794	5	NNC	ENSMUSG00000029522.13	novel	557	4	NA	NA	-1155	0	at_least_one_novel_splicesite	FALSE	canonical	3	2118	junction_4	157.856540884437	6624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGTGATTGTTATCTC	NA	False	NA	30	True	AATAAA	-21	NA	115603165	115612781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_115603279_115604200_115604380_115608840_115609001_115610051_115610180_115612567
ENSMUSG00000029524.17_115616069_115622425_1	chr5	-	1435	5	FSM	ENSMUSG00000029524.17	ENSMUST00000112066.2	1794	5	359	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	4.96865172858795	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGTGTGGACTGTGAAC	9379	False	NA	NA	False	AATAAA	-19	NA	115622425	115616068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_115616468_115617660_115617872_115618289_115618585_115620682_115621178_115622390
ENSMUSG00000029538.15_115465454_115471139_1	chr5	+	944	4	FSM	ENSMUSG00000029538.15	ENSMUST00000031513.14	1162	4	218	0	0	0	multi-exon	FALSE	canonical	3	1733	junction_1	69.0700127889569	800	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCGTGCAGTTGTCTTTG	352	False	NA	39	True	AATATA	-18	NA	115465453	115471139	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_115465559_115468556_115468718_115470175_115470349_115470634
ENSMUSG00000029544.17_115306748_115311379_1	chr5	-	814	3	ISM	ENSMUSG00000029544.17	ENSMUST00000112109.8	1071	7	8102	-25	7939	0	3prime_fragment	FALSE	canonical	3	234	junction_2	2	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	2387	False	NA	-1	True	AATAAA	-20	NA	115311379	115306747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_115307208_115310817_115310966_115311173
ENSMUSG00000029544.17_115306748_115319202_1	chr5	-	1249	6	ISM	ENSMUSG00000029544.17	ENSMUST00000145197.9	840	7	4913	-282	116	0	3prime_fragment	FALSE	canonical	3	15	junction_5	80.8272231367625	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	7798	False	NA	-1	True	AATAAA	-20	NA	115319202	115306747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115318846
ENSMUSG00000029544.17_115306748_115324257_1	chr5	-	1264	7	FSM	ENSMUSG00000029544.17	ENSMUST00000145197.9	840	7	-142	-282	-77	0	multi-exon	FALSE	canonical	3	15	junction_5	87.9837421850701	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	9975	False	NA	-1	True	AATAAA	-20	NA	115324257	115306747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115318846_115319031_115324070
ENSMUSG00000029544.17_115306748_115327042_1	chr5	-	1083	6	NNC	ENSMUSG00000029544.17	novel	1621	6	NA	NA	-2675	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	79.358931444419	520	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	7481	False	NA	-1	True	AATAAA	-20	NA	115327042	115306747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115326852
ENSMUSG00000029544.17_115306748_115333118_1	chr5	-	1098	6	NNC	ENSMUSG00000029544.17	novel	1621	6	NA	NA	-678	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_5	78.9926578866669	519	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	8085	False	NA	-1	True	AATAAA	-20	NA	115333118	115306747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115332913
ENSMUSG00000029544.17_115306748_115333118_2	chr5	-	1282	7	NNC	ENSMUSG00000029544.17	novel	1370	7	NA	NA	-678	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_6	95.2429641612556	591	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	8085	False	NA	-1	True	AATAAA	-20	NA	115333118	115306747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115318846_115319031_115332913
ENSMUSG00000029545.14_115248358_115257353_1	chr5	-	1654	9	NIC	ENSMUSG00000029545.14	novel	1870	10	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	2	25	junction_8	137.50522717337	3345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGCCTGTGTCTGTCTT	9826	False	NA	-4	True	AATAAA	-18	NA	115257353	115248357	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_115249066_115249152_115249210_115249377_115249474_115249695_115249834_115249915_115250087_115250298_115250451_115250823_115250936_115251122_115251273_115257283
ENSMUSG00000029545.14_115248358_115257353_2	chr5	-	1900	9	NIC	ENSMUSG00000029545.14	novel	1870	10	NA	NA	-7	0	intron_retention	FALSE	canonical	3	425	junction_3	14.5811307860536	3897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGCCTGTGTCTGTCTT	9826	False	NA	-4	True	AATAAA	-18	NA	115257353	115248357	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_115249066_115249152_115249210_115249377_115249474_115249695_115250087_115250298_115250451_115250823_115250936_115251122_115251273_115255623_115255788_115257283
ENSMUSG00000029552.20_17065148_17104893_1	chr6	+	1511	7	FSM	ENSMUSG00000029552.20	ENSMUST00000115467.11	2440	7	0	929	0	-929	multi-exon	FALSE	canonical	3	87	junction_1	5.93717104351896	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATTTTGTCTAATATTT	-34	True	NA	NA	False	AATAAA	-4	NA	17065147	17104893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_17065313_17086135_17086222_17096126_17096380_17097259_17097590_17099702_17099919_17100280_17100440_17104591
ENSMUSG00000029554.16_139994444_140118580_1	chr5	-	1222	6	ISM	ENSMUSG00000029554.16	ENSMUST00000199237.5	1603	7	42093	-5	-17359	0	3prime_fragment	FALSE	canonical	3	190	junction_1	20.4254742906989	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTCCAAGGCTCCAAGC	NA	False	NA	1	True	AATAAA	-27	NA	140118580	139994443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_139995030_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523
ENSMUSG00000029559.16_115080263_115084144_1	chr5	+	263	3	FSM	ENSMUSG00000029559.16	ENSMUST00000140090.2	368	3	-27	132	0	-132	multi-exon	FALSE	canonical	3	274	junction_1	5	2264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCAAGAAACTGGGAGCC	NA	False	NA	NA	False	NA	NA	NA	115080262	115084144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_115080415_115083844_115083888_115084076
ENSMUSG00000029559.16_115080263_115084144_2	chr5	+	342	3	ISM	ENSMUSG00000029559.16	ENSMUST00000131427.8	923	4	-6	761	0	-132	5prime_fragment	FALSE	canonical	3	25	junction_2	124.5	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCAAGAAACTGGGAGCC	NA	False	NA	NA	False	NA	NA	NA	115080262	115084144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_115080415_115083844_115083967_115084076
ENSMUSG00000029559.16_115080263_115085971_1	chr5	+	690	6	FSM	ENSMUSG00000029559.16	ENSMUST00000031538.9	2607	6	46	1871	0	128	multi-exon	FALSE	canonical	3	243	junction_3	24.1909073827337	2971	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAAAAGAAGAAGGCCA	NA	False	NA	NA	False	NA	NA	NA	115080262	115085971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_115080415_115083844_115083888_115084076_115084176_115084349_115084424_115085221_115085313_115085740
ENSMUSG00000029559.16_115080263_115086608_1	chr5	+	1327	6	FSM	ENSMUSG00000029559.16	ENSMUST00000031538.9	2607	6	46	1234	0	765	multi-exon	FALSE	canonical	3	243	junction_3	24.1909073827337	4189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGCCCTGGTCAGTGCT	NA	False	NA	26	True	AATAAA	-28	NA	115080262	115086608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_115080415_115083844_115083888_115084076_115084176_115084349_115084424_115085221_115085313_115085740
ENSMUSG00000029560.13_140327229_140374996_1	chr5	-	1435	11	FSM	ENSMUSG00000029560.13	ENSMUST00000031539.12	2627	11	21	1171	0	-528	multi-exon	FALSE	canonical	3	173	junction_10	18.7160359050735	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTTCCTGGCTGATTCC	7741	False	NA	-4	True	ACTAAA	-16	NA	140374996	140327228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946_140346138_140374902
ENSMUSG00000029569.10_13581293_13608043_1	chr6	-	3924	5	FSM	ENSMUSG00000029569.10	ENSMUST00000031554.9	4587	5	56	607	0	-607	multi-exon	TRUE	canonical	3	155	junction_4	32.9194091684526	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTGCTTTTAGAGTTT	-13	True	NA	NA	False	ATTAAA	-19	NA	13608043	13581292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_13583334_13591268_13591544_13594942_13595086_13602236_13603487_13607828
ENSMUSG00000029571.15_13069815_13084632_1	chr6	+	1389	9	FSM	ENSMUSG00000029571.15	ENSMUST00000031556.14	6002	9	-23	4636	0	2981	multi-exon	FALSE	canonical	3	91	junction_1	9.57127865021179	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCATAGATTTAATCTATAT	2	True	NA	NA	False	AATAAA	-14	NA	13069814	13084632	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_13069960_13070306_13070414_13071740_13071963_13075034_13075099_13078090_13078251_13081538_13081680_13082411_13082462_13083367_13083422_13084186
ENSMUSG00000029571.15_13069815_13085060_1	chr6	+	1817	9	FSM	ENSMUSG00000029571.15	ENSMUST00000031556.14	6002	9	-23	4208	0	3409	multi-exon	FALSE	canonical	3	91	junction_1	9.57127865021179	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGCTTTGATAAAGGTCA	2	True	NA	NA	False	AATAAA	-15	NA	13069814	13085060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_13069960_13070306_13070414_13071740_13071963_13075034_13075099_13078090_13078251_13081538_13081680_13082411_13082462_13083367_13083422_13084186
ENSMUSG00000029575.18_114570863_114582082_1	chr5	-	1213	9	FSM	ENSMUSG00000029575.18	ENSMUST00000031560.14	3020	9	39	1768	0	398	multi-exon	FALSE	canonical	3	162	junction_1	19.5604032422647	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTGAGGAGTTTAGTCAC	NA	False	NA	NA	False	TATAAA	-14	NA	114582082	114570862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_114571420_114573338_114573399_114574539_114574605_114574770_114574869_114575110_114575184_114575878_114575937_114576581_114576676_114580821_114580884_114581936
ENSMUSG00000029575.18_114571078_114582082_1	chr5	-	998	9	FSM	ENSMUSG00000029575.18	ENSMUST00000031560.14	3020	9	39	1983	0	183	multi-exon	FALSE	canonical	3	162	junction_1	19.5604032422647	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGCACTTGGGCTTTCTG	NA	False	NA	-5	True	AATGAA	-18	NA	114582082	114571077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_114571420_114573338_114573399_114574539_114574605_114574770_114574869_114575110_114575184_114575878_114575937_114576581_114576676_114580821_114580884_114581936
ENSMUSG00000029580.15_142889482_142891576_1	chr5	-	1334	5	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	933	612	0	-226	3prime_fragment	FALSE	canonical	3	4052	junction_3	83.3351666465004	33659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAGACAACATTGGCATG	9822	False	NA	17	True	NA	NA	NA	142891576	142889481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318
ENSMUSG00000029580.15_142889482_142892480_1	chr5	-	1274	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-226	intron_retention	FALSE	non_canonical	0	0	junction_3	1656.31755409402	35280	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAGACAACATTGGCATG	8918	False	NA	17	True	NA	NA	NA	142892480	142889481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890538_142890996_142891232_142891318_142891448_142892406
ENSMUSG00000029591.15_114268447_114277384_1	chr5	+	1980	7	NNC	ENSMUSG00000029591.15	novel	1985	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	272.703389947556	3490	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGCCGACTATTCTTCA	NA	False	NA	23	True	AATAAA	-19	NA	114268446	114277384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_114268687_114269384_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
ENSMUSG00000029591.15_114268447_114277384_2	chr5	+	1979	7	NNC	ENSMUSG00000029591.15	novel	1985	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	268.684087524529	2687	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGCCGACTATTCTTCA	NA	False	NA	23	True	AATAAA	-19	NA	114268446	114277384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_114268687_114269379_114269575_114270241_114270338_114273930_114274023_114274407_114274497_114275213_114275393_114276296
ENSMUSG00000029592.12_114203522_114227670_1	chr5	+	731	3	FSM	ENSMUSG00000029592.12	ENSMUST00000162506.2	588	3	0	-143	0	143	multi-exon	FALSE	canonical	1	2	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTTCCCTAGTCTCATA	NA	False	NA	NA	False	NA	NA	NA	114203521	114227670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_114203830_114224730_114224981_114227497
ENSMUSG00000029592.12_114261987_114266251_1	chr5	+	1128	5	NNC	ENSMUSG00000029592.12	novel	4604	13	NA	NA	12798	3470	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	210	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGACACACGCAGCCCCAG	NA	False	NA	NA	False	NA	NA	NA	114261986	114266251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_114262316_114263592_114263792_114263920_114264169_114265586_114265831_114266143
ENSMUSG00000029592.12_114261987_114266251_2	chr5	+	869	4	NNC	ENSMUSG00000029592.12	novel	4604	13	NA	NA	12798	3470	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2584	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGACACACGCAGCCCCAG	NA	False	NA	NA	False	NA	NA	NA	114261986	114266251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_114262316_114263592_114263792_114265597_114265831_114266143
ENSMUSG00000029592.12_114261987_114266251_3	chr5	+	1250	5	NNC	ENSMUSG00000029592.12	novel	4604	13	NA	NA	12798	3470	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	431	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGACACACGCAGCCCCAG	NA	False	NA	NA	False	NA	NA	NA	114261986	114266251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_114262316_114263592_114263792_114263920_114264169_114265586_114265831_114266021
ENSMUSG00000029592.12_114261987_114266251_4	chr5	+	957	5	NNC	ENSMUSG00000029592.12	novel	4604	13	NA	NA	12798	3470	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2315	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGACACACGCAGCCCCAG	NA	False	NA	NA	False	NA	NA	NA	114261986	114266251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_114262316_114263592_114263792_114263920_114263998_114265586_114265831_114266143
ENSMUSG00000029596.14_120596267_120605425_1	chr5	-	1253	8	ISM	ENSMUSG00000029596.14	ENSMUST00000031594.13	1476	9	5450	0	0	0	3prime_fragment	FALSE	canonical	1	1	junction_2	1.82946406783796	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTGTGGCTCCCTGGGTTC	7153	False	NA	NA	False	AATAAA	-15	NA	120605425	120596266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_120596617_120597509_120597635_120597820_120598049_120598671_120598761_120600041_120600182_120600910_120600951_120601096_120601291_120605338
ENSMUSG00000029599.14_120751192_120765291_1	chr5	+	2568	20	FSM	ENSMUSG00000029599.14	ENSMUST00000031598.11	4322	20	388	1366	0	-401	multi-exon	FALSE	canonical	3	468	junction_5	36.9159410499192	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGCCAGGGCGCCTTTGG	NA	False	NA	NA	False	NA	NA	NA	120751191	120765291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_120751372_120755023_120755154_120756204_120756276_120756664_120756854_120756940_120756991_120757669_120757712_120757828_120757925_120758322_120758445_120758536_120758599_120758691_120758824_120759679_120759891_120761245_120761381_120761636_120761874_120761956_120762031_120762602_120762795_120763766_120763910_120763990_120764105_120764465_120764571_120764898_120765015_120765124
ENSMUSG00000029599.14_120751192_120765692_1	chr5	+	2969	20	FSM	ENSMUSG00000029599.14	ENSMUST00000031598.11	4322	20	388	965	0	0	multi-exon	FALSE	canonical	3	468	junction_5	36.9159410499192	858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGGAGTGTGGCTTCCT	NA	False	NA	27	True	AATAAA	-18	NA	120751191	120765692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_120751372_120755023_120755154_120756204_120756276_120756664_120756854_120756940_120756991_120757669_120757712_120757828_120757925_120758322_120758445_120758536_120758599_120758691_120758824_120759679_120759891_120761245_120761381_120761636_120761874_120761956_120762031_120762602_120762795_120763766_120763910_120763990_120764105_120764465_120764571_120764898_120765015_120765124
ENSMUSG00000029599.14_120763990_120765291_1	chr5	+	503	4	ISM	ENSMUSG00000029599.14	ENSMUST00000031598.11	4322	20	13186	1366	4598	-401	3prime_fragment	FALSE	canonical	3	562	junction_2	12.2292908852294	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGCCAGGGCGCCTTTGG	9874	False	NA	NA	False	NA	NA	NA	120763989	120765291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_120764105_120764465_120764571_120764898_120765015_120765124
ENSMUSG00000029599.14_120763990_120765692_1	chr5	+	904	4	ISM	ENSMUSG00000029599.14	ENSMUST00000031598.11	4322	20	13186	965	4598	0	3prime_fragment	FALSE	canonical	3	562	junction_2	12.2292908852294	551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGGAGTGTGGCTTCCT	9874	False	NA	27	True	AATAAA	-18	NA	120763989	120765692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_120764105_120764465_120764571_120764898_120765015_120765124
ENSMUSG00000029600.11_120740170_120750635_1	chr5	-	1100	4	NIC	ENSMUSG00000029600.11	novel	712	3	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	2	6	junction_2	29.8923996285938	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCTTCAGTCCTGATACT	6334	False	NA	-4	True	NA	NA	NA	120750635	120740169	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_120740583_120742274_120742313_120749442_120749795_120750338
ENSMUSG00000029602.12_120812873_120817662_1	chr5	+	1310	6	NNC	ENSMUSG00000029602.12	novel	486	2	NA	NA	-3785	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	10.6282642044691	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGTGACGTGTTAAAATCG	194	False	NA	11	True	TATAAA	-21	NA	120812872	120817662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_120813041_120813454_120813593_120813670_120813807_120814852_120814974_120816687_120816759_120816986
ENSMUSG00000029603.16_120818268_120821521_1	chr5	-	1905	6	ISM	ENSMUSG00000029603.16	ENSMUST00000145174.8	2961	8	11947	0	-541	0	3prime_fragment	FALSE	canonical	3	95	junction_3	14.7051011557214	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120821521	120818267	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359
ENSMUSG00000029607.15_143803586_143839535_1	chr5	-	2748	15	Fusion	ENSMUSG00000029607.15_ENSMUSG00000029610.14	novel	1185	4	NA	NA	-5032	23973	multi-exon	FALSE	non_canonical	0	0	junction_1	0	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCTCCCCCCAAGCCGG	NA	False	NA	NA	False	NA	NA	NA	143839535	143803585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr5_-_143803764_143808680_143808840_143810568_143810703_143812477_143812516_143814393_143814494_143816252_143816334_143818970_143819071_143820790_143820849_143821473_143821799_143823667_143823780_143826213_143826315_143833982_143834095_143834292_143834376_143835831_143836066_143838602
ENSMUSG00000029613.16_143839522_143846629_1	chr5	+	1149	4	NNC	ENSMUSG00000029613.16	novel	4325	15	NA	NA	35820	5560	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2619	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGGCGTTCCGGAAAATG	NA	False	NA	NA	False	NA	NA	NA	143839521	143846629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_143840001_143841382_143841615_143843366_143843574_143846398
ENSMUSG00000029614.14_121342609_121347030_1	chr5	+	931	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	65	274	0	1	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	114062	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	2	True	ATTAAA	-16	NA	121342608	121347030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
ENSMUSG00000029614.14_121342609_121347030_2	chr5	+	925	7	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6136.89765317587	90117	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	2	True	ATTAAA	-16	NA	121342608	121347030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_121342616_121343468_121343727_121343822_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
ENSMUSG00000029614.14_121342609_121347030_3	chr5	+	922	7	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	6219.88043829354	50731	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	2	True	ATTAAA	-16	NA	121342608	121347030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346853
ENSMUSG00000029614.14_121343472_121347030_1	chr5	+	916	6	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	2	234	junction_2	6599.03742677673	82637	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	2	True	ATTAAA	-16	NA	121343471	121347030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_121343727_121343816_121343919_121344734_121344874_121345209_121345259_121346453_121346639_121346844
ENSMUSG00000029616.10_121582819_121590429_1	chr5	-	1132	3	FSM	ENSMUSG00000029616.10	ENSMUST00000130451.2	5204	3	140	3932	-18	0	multi-exon	FALSE	canonical	3	820	junction_1	20.5	3740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGGTTTTCTTTTTAG	3352	False	NA	-41	True	AATAAA	-14	NA	121590429	121582818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_121583636_121585203_121585343_121590253
ENSMUSG00000029616.10_121582819_121590569_1	chr5	-	1272	3	FSM	ENSMUSG00000029616.10	ENSMUST00000130451.2	5204	3	0	3932	0	0	multi-exon	FALSE	canonical	3	820	junction_1	20.5	4438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGGTTTTCTTTTTAG	3212	False	NA	-41	True	AATAAA	-14	NA	121590569	121582818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_121583636_121585203_121585343_121590253
ENSMUSG00000029617.11_143924727_143951695_1	chr5	-	1788	15	NNC	ENSMUSG00000029617.11	novel	1769	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	38	junction_2	223.898722093499	1148	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTCCTGTTGAGTCCT	NA	False	NA	1	True	AATAAA	-22	NA	143951695	143924726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_143925068_143927455_143927579_143928289_143928449_143929326_143929445_143930043_143930078_143934980_143935093_143935361_143935424_143938194_143938277_143940860_143941037_143946020_143946105_143947848_143947897_143948269_143948348_143949620_143949715_143949811_143949910_143951516
ENSMUSG00000029617.11_143924888_143951695_1	chr5	-	1632	15	FSM	ENSMUSG00000029617.11	ENSMUST00000031621.11	1769	15	-24	161	0	-161	multi-exon	FALSE	canonical	3	726	junction_9	71.895615943093	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCTACTTGGTCTGATG	NA	False	NA	-31	True	AGTAAA	-23	NA	143951695	143924887	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_143925068_143927455_143927584_143928289_143928449_143929326_143929445_143930043_143930078_143934980_143935093_143935361_143935424_143938194_143938277_143940860_143941037_143946020_143946105_143947848_143947897_143948269_143948348_143949620_143949715_143949811_143949910_143951516
ENSMUSG00000029621.15_145020694_145045571_1	chr5	+	1572	10	NNC	ENSMUSG00000029621.15	novel	1632	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	120.47590814949	1462	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTTTTCTTTATACTCT	NA	False	NA	22	True	ATTAAA	-23	NA	145020693	145045571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_145020783_145027962_145028051_145029267_145029373_145032861_145033085_145034025_145034134_145037866_145038080_145041251_145041328_145041507_145041702_145043854_145043946_145045186
ENSMUSG00000029622.17_145051068_145064883_1	chr5	+	1430	10	NNC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	583.629787104001	8424	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACAAACAACC	8075	False	NA	-84	True	NA	NA	NA	145051067	145064883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_145051152_145058472_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
ENSMUSG00000029622.17_145051068_145064883_2	chr5	+	1436	10	FSM	ENSMUSG00000029622.17	ENSMUST00000085679.13	3105	10	43	1626	0	0	multi-exon	FALSE	canonical	3	1600	junction_4	137.116333413962	8917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACAAACAACC	8075	False	NA	-84	True	NA	NA	NA	145051067	145064883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
ENSMUSG00000029622.17_145051126_145064938_1	chr5	+	1433	10	FSM	ENSMUSG00000029622.17	ENSMUST00000085679.13	3105	10	101	1571	0	40	multi-exon	FALSE	canonical	3	1600	junction_4	137.116333413962	8814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAATGCTGGTCATGAAC	8133	False	NA	-29	True	NA	NA	NA	145051125	145064938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
ENSMUSG00000029622.17_145066464_145076832_1	chr5	+	1246	6	NNC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	2431	9317	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	14053	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACACCGGAACCGGAAACTC	NA	False	NA	NA	False	NA	NA	NA	145066463	145076832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_145067180_145068174_145068327_145069668_145069791_145071874_145071983_145073711_145073804_145076776
ENSMUSG00000029622.17_145066464_145076832_2	chr5	+	1252	6	NNC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	2431	9317	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	14534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACACCGGAACCGGAAACTC	NA	False	NA	NA	False	NA	NA	NA	145066463	145076832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_145067186_145068174_145068327_145069668_145069791_145071874_145071983_145073711_145073796_145076768
ENSMUSG00000029623.15_145066464_145076832_1	chr5	-	1244	6	NNC	ENSMUSG00000029623.15	novel	2353	6	NA	NA	-24	430	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	192.739617100377	13267	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGTTTGGCAGTTTCT	NA	False	NA	-22	True	ATTAAA	-15	NA	145076832	145066463	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145067186_145068174_145068327_145069668_145069791_145071874_145071983_145073711_145073796_145076776
ENSMUSG00000029623.15_145066464_145076832_2	chr5	-	1252	6	FSM	ENSMUSG00000029623.15	ENSMUST00000031627.9	2353	6	216	885	-24	430	multi-exon	FALSE	canonical	3	415	junction_5	28.7708185493566	15657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGTTTGGCAGTTTCT	NA	False	NA	-22	True	ATTAAA	-15	NA	145076832	145066463	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_145067186_145068174_145068327_145069668_145069791_145071874_145071983_145073711_145073804_145076776
ENSMUSG00000029623.15_145066894_145076832_1	chr5	-	822	6	FSM	ENSMUSG00000029623.15	ENSMUST00000031627.9	2353	6	216	1315	-24	0	multi-exon	FALSE	canonical	3	415	junction_5	28.7708185493566	3080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCATTTGAATGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	145076832	145066893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_145067186_145068174_145068327_145069668_145069791_145071874_145071983_145073711_145073804_145076776
ENSMUSG00000029623.15_145071930_145076832_1	chr5	-	201	3	ISM	ENSMUSG00000029623.15	ENSMUST00000031627.9	2353	6	216	6351	-24	1458	5prime_fragment	FALSE	canonical	3	415	junction_2	34	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAAGAAATCTCTAGACT	NA	False	NA	NA	False	GGGGCT	-18	NA	145076832	145071929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_145071983_145073711_145073804_145076776
ENSMUSG00000029624.11_145077218_145084884_1	chr5	-	694	5	NIC	ENSMUSG00000029624.11	novel	3087	9	NA	NA	18882	7106	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGACGGCTTCCGCTCCGGC	NA	False	NA	NA	False	NA	NA	NA	145084884	145077217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_145077253_145078114_145078247_145079257_145079378_145083252_145083420_145084644
ENSMUSG00000029624.11_145077218_145084884_2	chr5	-	810	6	NNC	ENSMUSG00000029624.11	novel	3087	9	NA	NA	18882	7106	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5035	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGACGGCTTCCGCTCCGGC	NA	False	NA	NA	False	NA	NA	NA	145084884	145077217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145077246_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
ENSMUSG00000029624.11_145077218_145084884_3	chr5	-	938	6	NIC	ENSMUSG00000029624.11	novel	3087	9	NA	NA	18882	7106	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	5497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGACGGCTTCCGCTCCGGC	NA	False	NA	NA	False	NA	NA	NA	145084884	145077217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_145077374_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
ENSMUSG00000029624.11_145077218_145084884_4	chr5	-	962	7	NNC	ENSMUSG00000029624.11	novel	3087	9	NA	NA	18882	7106	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1102	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGACGGCTTCCGCTCCGGC	NA	False	NA	NA	False	NA	NA	NA	145084884	145077217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145077253_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145083762_145083908_145084644
ENSMUSG00000029624.11_145084324_145088237_1	chr5	-	1134	2	ISM	ENSMUSG00000029624.11	ENSMUST00000031628.10	3087	9	15681	0	15529	0	3prime_fragment	FALSE	canonical	3	97	junction_1	0	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGTGCGTCTCATATATA	NA	False	NA	2	True	AATAAA	-30	NA	145088237	145084323	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_145085316_145088095
ENSMUSG00000029625.17_145104057_145118851_1	chr5	+	548	2	NNC	ENSMUSG00000029625.17	novel	1606	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	234	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTTTCATTACTTAA	NA	False	NA	23	True	ATTAAA	-15	NA	145104056	145118851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_145104130_145118376
ENSMUSG00000029625.17_145104057_145118851_3	chr5	+	343	2	NNC	ENSMUSG00000029625.17	novel	1606	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	201	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTTTCATTACTTAA	NA	False	NA	23	True	ATTAAA	-15	NA	145104056	145118851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_145104130_145118581
ENSMUSG00000029629.18_11997068_12081197_1	chr6	+	619	5	ISM	ENSMUSG00000029629.18	ENSMUST00000115511.9	3336	18	71153	7	6197	0	3prime_fragment	FALSE	canonical	3	98	junction_4	31.2759891929896	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGTATTTGAAATTCATA	NA	False	NA	5	True	AATAAA	-16	NA	11997067	12081197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_11997194_12006809_12006861_12006983_12007106_12047825_12047944_12080995
ENSMUSG00000029632.8_11900371_11907496_1	chr6	-	544	4	FSM	ENSMUSG00000029632.8	ENSMUST00000204978.3	610	4	-14	80	0	0	multi-exon	FALSE	canonical	3	8511	junction_2	453.262494465281	43733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGTGTCACTATTTAATGC	NA	False	NA	-11	True	AATAAA	-15	NA	11907496	11900370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_11900591_11905200_11905262_11906018_11906108_11907322
ENSMUSG00000029634.16_146146002_146158247_1	chr5	-	3334	5	FSM	ENSMUSG00000029634.16	ENSMUST00000161859.8	3452	5	118	0	-19	0	multi-exon	FALSE	canonical	3	59	junction_4	27.6348964173923	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTGTGCAAACTTATTTC	2299	False	NA	NA	False	ATTAAA	-28	NA	146158247	146146001	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146158029
ENSMUSG00000029635.16_146236308_146239684_1	chr5	+	1537	3	ISM	ENSMUSG00000029635.16	ENSMUST00000159615.2	1976	6	4588	-55	3133	0	3prime_fragment	FALSE	canonical	3	84	junction_1	10.5	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGGTGTCAACTATATT	4748	False	NA	NA	False	AATAAA	-20	NA	146236307	146239684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_146236387_146236501_146236661_146238385
ENSMUSG00000029642.12_147014374_147015896_1	chr5	+	682	2	FSM	ENSMUSG00000029642.12	ENSMUST00000050970.4	1196	2	514	0	0	0	multi-exon	FALSE	canonical	3	451	junction_1	0	7092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGAGTGGTTTCTCTTC	NA	False	NA	22	True	NA	NA	NA	147014373	147015896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_147014504_147015344
ENSMUSG00000029642.12_147014374_147048171_1	chr5	+	914	3	NNC	ENSMUSG00000029642.12	novel	1137	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	226.5	4067	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTCCTCTTTTGGGTGT	NA	False	NA	16	True	AATAAA	-17	NA	147014373	147048171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_147014504_147038043_147038114_147047457
ENSMUSG00000029649.11_147797447_147812589_1	chr5	+	726	6	FSM	ENSMUSG00000029649.11	ENSMUST00000031654.10	1579	6	176	677	0	168	multi-exon	FALSE	canonical	3	2983	junction_1	193.876661823954	27869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCATGTGTGTGGTTGGG	NA	False	NA	31	True	AATAAA	-21	NA	147797446	147812589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_147797502_147799362_147799461_147805532_147805594_147806221_147806324_147809375_147809470_147812273
ENSMUSG00000029649.11_147797447_147812589_2	chr5	+	720	6	NNC	ENSMUSG00000029649.11	novel	1579	6	NA	NA	0	168	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1295.8027010313	26813	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCATGTGTGTGGTTGGG	NA	False	NA	31	True	AATAAA	-21	NA	147797446	147812589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_147797502_147799362_147799461_147805532_147805594_147806227_147806324_147809375_147809470_147812273
ENSMUSG00000029651.17_148239984_148250270_1	chr5	+	469	4	FSM	ENSMUSG00000029651.17	ENSMUST00000085554.5	1009	4	0	540	0	0	multi-exon	FALSE	canonical	3	48	junction_1	28.87136220471	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCCTCCTCTGGA	NA	False	NA	15	True	ATTAAA	-23	NA	148239983	148250270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_148240080_148240292_148240413_148243439_148243538_148250115
ENSMUSG00000029651.17_148239984_148250551_1	chr5	+	857	4	FSM	ENSMUSG00000029651.17	ENSMUST00000152105.8	585	4	9	-281	0	7	multi-exon	FALSE	canonical	3	51	junction_1	27.4752413799932	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAAAATGTTTTAGTA	NA	False	NA	NA	False	NA	NA	NA	148239983	148250551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_148240187_148240292_148240413_148243439_148243538_148250115
ENSMUSG00000029651.17_148239984_148250551_2	chr5	+	750	4	FSM	ENSMUSG00000029651.17	ENSMUST00000085554.5	1009	4	0	259	0	7	multi-exon	FALSE	canonical	3	48	junction_1	28.87136220471	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAAAATGTTTTAGTA	NA	False	NA	NA	False	NA	NA	NA	148239983	148250551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_148240080_148240292_148240413_148243439_148243538_148250115
ENSMUSG00000029651.17_148239984_148250848_1	chr5	+	1154	4	FSM	ENSMUSG00000029651.17	ENSMUST00000152105.8	585	4	9	-578	0	0	multi-exon	FALSE	canonical	3	51	junction_1	27.4752413799932	839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCCTGGAAATATTTCTA	NA	False	NA	NA	False	AATGAA	-17	NA	148239983	148250848	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_148240187_148240292_148240413_148243439_148243538_148250115
ENSMUSG00000029655.18_150566465_150584952_1	chr5	-	816	5	ISM	ENSMUSG00000029655.18	ENSMUST00000118316.8	8982	6	4125	7028	0	0	3prime_fragment	FALSE	canonical	3	244	junction_2	15.8902485820707	289	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTTGTTTAGATCCTAA	9562	False	NA	11	True	AATAAA	-32	NA	150584952	150566464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_150566781_150570465_150570543_150570924_150571014_150574079_150574205_150584743
ENSMUSG00000029655.18_150585525_150589053_1	chr5	-	542	2	ISM	ENSMUSG00000029655.18	ENSMUST00000144378.2	3842	3	-11	13850	-11	357	5prime_fragment	FALSE	canonical	3	228	junction_1	0	156	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGACAAGAAGAAAAACAG	5461	False	NA	NA	False	NA	NA	NA	150589053	150585524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_150585979_150588965
ENSMUSG00000029657.16_149540310_149559706_1	chr5	-	3404	18	FSM	ENSMUSG00000029657.16	ENSMUST00000202361.4	3802	18	97	301	-32	0	multi-exon	FALSE	canonical	3	1194	junction_12	107.653101726883	984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTTGGCTTTGTCTCC	NA	False	NA	-6	True	AATAAA	-24	NA	149559706	149540309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
ENSMUSG00000029657.16_149540310_149559803_1	chr5	-	3341	19	NIC	ENSMUSG00000029657.16	novel	3802	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	169	junction_18	290.373753405274	905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTTGGCTTTGTCTCC	NA	False	NA	-6	True	AATAAA	-24	NA	149559803	149540309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434_149559625_149559784
ENSMUSG00000029658.18_149520821_149535363_2	chr5	+	928	4	ISM	ENSMUSG00000029658.18	ENSMUST00000202902.2	2574	23	67623	-4	15578	4	3prime_fragment	FALSE	canonical	1	2	junction_1	0.816496580927726	335	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGATTCTCGCTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	149520820	149535363	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_149521054_149522668_149522863_149529753_149529852_149534960
ENSMUSG00000029658.18_149520955_149535363_1	chr5	+	794	4	ISM	ENSMUSG00000029658.18	ENSMUST00000202902.2	2574	23	67757	-4	15712	4	3prime_fragment	FALSE	canonical	1	2	junction_1	0.816496580927726	333	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGATTCTCGCTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	149520954	149535363	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_149521054_149522668_149522863_149529753_149529852_149534960
ENSMUSG00000029676.16_25743944_25748323_1	chr6	-	889	3	ISM	ENSMUSG00000029676.16	ENSMUST00000166445.8	1923	15	49693	-636	-2128	-208	3prime_fragment	FALSE	canonical	3	142	junction_1	3.5	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATTTTTGTGTCTGTGTGT	NA	False	NA	-6	True	AATAAA	-14	NA	25748323	25743943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_25744693_25745889_25745996_25748289
ENSMUSG00000029684.15_24626662_24664987_1	chr6	-	996	6	ISM	ENSMUSG00000029684.15	ENSMUST00000031695.15	4352	11	21	12858	0	0	5prime_fragment	FALSE	canonical	3	160	junction_2	27.1484806204694	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGTAAAAAAA	12	True	NA	NA	False	NA	NA	NA	24664987	24626661	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_24626862_24629923_24629948_24633835_24633933_24634570_24634658_24637647_24637783_24664534
ENSMUSG00000029686.16_47430838_47502993_1	chr6	+	3043	22	NIC	ENSMUSG00000029686.16	novel	2385	20	NA	NA	0	1	intron_retention	FALSE	canonical	3	204	junction_1	97.2284170361992	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTACAAGTTGCATTT	NA	False	NA	9	True	AATAAA	-14	NA	47430837	47502993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_47430964_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
ENSMUSG00000029686.16_47430838_47503073_1	chr6	+	3123	22	NIC	ENSMUSG00000029686.16	novel	2385	20	NA	NA	0	0	intron_retention	FALSE	canonical	3	204	junction_1	97.2284170361992	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTATATTCCCATTGTCTT	NA	False	NA	19	True	AATAAA	-20	NA	47430837	47503073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_47430964_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
ENSMUSG00000029687.17_47507073_47510760_1	chr6	-	796	5	ISM	ENSMUSG00000029687.17	ENSMUST00000092648.13	2115	18	43834	-402	1299	0	3prime_fragment	FALSE	canonical	3	896	junction_4	82.5450634502149	2985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTGTTAGTATTGCATG	NA	False	NA	NA	False	AATAAA	-26	NA	47510760	47507072	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675
ENSMUSG00000029687.17_47507253_47510760_2	chr6	-	616	5	ISM	ENSMUSG00000029687.17	ENSMUST00000092648.13	2115	18	43834	-222	1299	0	3prime_fragment	FALSE	canonical	3	896	junction_4	82.5450634502149	1022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTTTTCAAATTTGAATA	NA	False	NA	-58	True	NA	NA	NA	47510760	47507252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675
ENSMUSG00000029687.17_47507253_47522659_1	chr6	-	1162	10	ISM	ENSMUSG00000029687.17	ENSMUST00000092648.13	2115	18	31935	-222	158	0	3prime_fragment	FALSE	canonical	3	443	junction_6	169.301469734675	1381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTTTTCAAATTTGAATA	NA	False	NA	-58	True	NA	NA	NA	47522659	47507252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47519299_47519341_47520879_47520975_47521373_47521544_47522609
ENSMUSG00000029699.14_135989078_135991143_1	chr5	-	1075	2	FSM	ENSMUSG00000029699.14	ENSMUST00000111150.2	459	2	-18	-598	-18	0	multi-exon	TRUE	canonical	1	1	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTTTTAACTGAGGTCAT	NA	False	NA	-8	True	AATAAA	-15	NA	135991143	135989077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_135990063_135991053
ENSMUSG00000029701.16_29125017_29128684_1	chr6	-	867	3	ISM	ENSMUSG00000029701.16	ENSMUST00000169214.8	1923	12	26406	-124	2617	124	3prime_fragment	FALSE	canonical	3	224	junction_1	22.5	371	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACCTTTTTAACATTTTT	NA	False	NA	-19	True	AATATA	-29	NA	29128684	29125016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_29125524_29127796_29127900_29128427
ENSMUSG00000029701.16_29125017_29132143_1	chr6	-	1187	6	NNC	ENSMUSG00000029701.16	novel	1923	12	NA	NA	-842	124	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	97.6565409995664	488	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACCTTTTTAACATTTTT	NA	False	NA	-19	True	AATATA	-29	NA	29132143	29125016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_29125524_29127796_29127900_29128427_29128685_29131265_29131341_29131625_29131776_29132048
ENSMUSG00000029701.16_29125141_29132114_1	chr6	-	1034	6	NNC	ENSMUSG00000029701.16	novel	1923	12	NA	NA	-813	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	97.6565409995664	157	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTGAGAGTACTGAATT	NA	False	NA	-79	True	NA	NA	NA	29132114	29125140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_29125524_29127796_29127900_29128427_29128685_29131265_29131341_29131625_29131776_29132048
ENSMUSG00000029703.11_136145556_136151801_1	chr5	-	575	4	NIC	ENSMUSG00000029703.11	novel	2473	15	NA	NA	2612	6070	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	8856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGAGCCCCGAAGCGCGA	9637	False	NA	NA	False	NA	NA	NA	136151801	136145555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_136145660_136148848_136148939_136150942_136151118_136151595
ENSMUSG00000029703.11_136145556_136151801_2	chr5	-	563	4	NNC	ENSMUSG00000029703.11	novel	2473	15	NA	NA	2612	6070	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8112	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGAGCCCCGAAGCGCGA	9637	False	NA	NA	False	NA	NA	NA	136151801	136145555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_136145660_136148848_136148939_136150942_136151118_136151607
ENSMUSG00000029703.11_136151921_136164876_1	chr5	-	2126	15	FSM	ENSMUSG00000029703.11	ENSMUST00000006301.11	2473	15	52	295	0	0	multi-exon	FALSE	canonical	3	342	junction_8	23.380722043284	833	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCCAGTGGGAAATGAGTG	6736	False	NA	-11	True	ATTAAA	-19	NA	136164876	136151920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_136152170_136152256_136152367_136152453_136152610_136152720_136152813_136159074_136159216_136159316_136159390_136159827_136160036_136160306_136160417_136160965_136161081_136161159_136161283_136161828_136161934_136162158_136162300_136162787_136162905_136163352_136163588_136164725
ENSMUSG00000029703.11_136163480_136164876_1	chr5	-	259	2	ISM	ENSMUSG00000029703.11	ENSMUST00000139908.2	2723	4	40	2951	0	-1594	5prime_fragment	FALSE	canonical	3	356	junction_1	0	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAACCTGGGCCTGTCCC	6736	False	NA	NA	False	NA	NA	NA	136164876	136163479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_136163588_136164725
ENSMUSG00000029718.15_137603367_137606932_1	chr5	-	1059	7	ISM	ENSMUSG00000029718.15	ENSMUST00000054564.13	1585	10	2706	-3	-478	0	3prime_fragment	FALSE	canonical	3	52	junction_6	194.602729226037	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATCGTGTCTGAGGTTCT	6840	False	NA	-4	True	AATAAA	-19	NA	137606932	137603366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137606878
ENSMUSG00000029718.15_137603367_137606932_2	chr5	-	934	6	NIC	ENSMUSG00000029718.15	novel	1585	10	NA	NA	-478	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_5	232.457652057316	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATCGTGTCTGAGGTTCT	6840	False	NA	-4	True	AATAAA	-19	NA	137606932	137603366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606878
ENSMUSG00000029718.15_137603367_137606962_1	chr5	-	1026	7	NNC	ENSMUSG00000029718.15	novel	1585	10	NA	NA	-508	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	213.178654862275	372	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATCGTGTCTGAGGTTCT	6810	False	NA	-4	True	AATAAA	-19	NA	137606962	137603366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137606941
ENSMUSG00000029723.17_137744221_137745358_1	chr5	+	705	2	ISM	ENSMUSG00000029723.17	ENSMUST00000129349.2	2989	3	0	5632	0	-5632	5prime_fragment	FALSE	canonical	3	319	junction_1	0	222	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCGGAGCCCCAGGGACCA	NA	False	NA	NA	False	NA	NA	NA	137744220	137745358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_137744677_137745109
ENSMUSG00000029723.17_137744435_137745358_1	chr5	+	491	2	ISM	ENSMUSG00000029723.17	ENSMUST00000129349.2	2989	3	214	5632	177	-5632	5prime_fragment	FALSE	canonical	3	319	junction_1	0	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCGGAGCCCCAGGGACCA	NA	False	NA	NA	False	NA	NA	NA	137744434	137745358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_137744677_137745109
ENSMUSG00000029723.17_137746716_137758011_1	chr5	+	976	4	NNC	ENSMUSG00000029723.17	novel	402	2	NA	NA	2458	201	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_1	175.655597374205	463	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGAGGTTGGTGTGCTGT	20	False	NA	13	True	ATTAAA	-24	NA	137746715	137758011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_137746799_137749469_137749631_137756945_137756995_137757328
ENSMUSG00000029725.11_137777111_137778372_1	chr5	+	778	3	FSM	ENSMUSG00000029725.11	ENSMUST00000126126.8	430	3	0	-348	0	0	multi-exon	FALSE	canonical	3	31	junction_1	199	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777110	137778372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_137777160_137777563_137777808_137777887
ENSMUSG00000029725.11_137777111_137778372_2	chr5	+	687	4	NIC	ENSMUSG00000029725.11	novel	430	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_1	179.735608294208	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777110	137778372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_137777160_137777563_137777808_137777887_137778025_137778115
ENSMUSG00000029725.11_137777166_137778372_1	chr5	+	819	3	NIC	ENSMUSG00000029725.11	novel	956	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_2	148	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777165	137778372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_137777484_137777563_137777808_137778115
ENSMUSG00000029725.11_137777166_137778372_2	chr5	+	1047	3	ISM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	0	0	0	0	intron_retention	FALSE	canonical	3	301	junction_1	64	1311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777165	137778372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_137777484_137777563_137777808_137777887
ENSMUSG00000029725.11_137777451_137778372_1	chr5	+	671	4	FSM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	285	0	-248	0	multi-exon	FALSE	canonical	3	301	junction_1	53.8970211504206	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777450	137778372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_137777484_137777563_137777808_137777887_137778025_137778115
ENSMUSG00000029730.17_138162862_138164279_1	chr5	-	539	3	ISM	ENSMUSG00000029730.17	ENSMUST00000000505.16	2962	15	6405	17	-301	0	3prime_fragment	FALSE	canonical	3	2180	junction_1	164.5	587	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	8121	False	NA	-25	True	AATAAA	-15	NA	138164279	138162861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_138163183_138163313_138163424_138164171
ENSMUSG00000029730.17_138162862_138170114_1	chr5	-	2374	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	570.179746989974	1594	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2286	False	NA	-25	True	AATAAA	-15	NA	138170114	138162861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165019_138165298_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
ENSMUSG00000029730.17_138162862_138170114_2	chr5	-	1103	8	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	775.274671536824	761	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2286	False	NA	-25	True	AATAAA	-15	NA	138170114	138162861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165019_138167678_138167736_138167821_138167987_138168578_138168659_138169987
ENSMUSG00000029730.17_138162862_138170114_3	chr5	-	2374	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	570.373208468609	2343	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2286	False	NA	-25	True	AATAAA	-15	NA	138170114	138162861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165697_138165808_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
ENSMUSG00000029730.17_138162862_138170114_4	chr5	-	2369	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-34	0	at_least_one_novel_splicesite	TRUE	canonical	1	29	junction_14	565.543210063546	3256	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2286	False	NA	-25	True	AATAAA	-15	NA	138170114	138162861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168653_138169987
ENSMUSG00000029730.17_138162862_138170114_5	chr5	-	2369	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	573.544991385033	2311	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2286	False	NA	-25	True	AATAAA	-15	NA	138170114	138162861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167204_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
ENSMUSG00000029730.17_138162862_138170114_6	chr5	-	2368	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	570.745453288048	1390	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2286	False	NA	-25	True	AATAAA	-15	NA	138170114	138162861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_138163176_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
ENSMUSG00000029730.17_138170264_138176949_1	chr5	-	1737	15	Fusion	ENSMUSG00000036980.14_ENSMUSG00000029730.17	novel	2962	15	NA	NA	2781	-2591	intron_retention	FALSE	non_canonical	0	0	junction_1	0	275	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCGCCCTCAAGCCCCTT	7767	False	NA	NA	False	NA	NA	NA	138176949	138170263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr5_-_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174526_138174873_138174981_138175078_138175174_138175417_138175463_138176184_138176236_138176330_138176443_138176538
ENSMUSG00000029730.17_138170330_138176949_1	chr5	-	1671	15	Fusion	ENSMUSG00000036980.14_ENSMUSG00000029730.17	novel	2962	15	NA	NA	2781	-2657	intron_retention	FALSE	non_canonical	0	0	junction_1	0	272	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGCATTAATTTCGAACCG	7767	False	NA	NA	False	AAGAAA	-24	NA	138176949	138170329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr5_-_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174526_138174873_138174981_138175078_138175174_138175417_138175463_138176184_138176236_138176330_138176443_138176538
ENSMUSG00000029752.13_7675169_7693254_1	chr6	-	1995	12	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2486.49352494367	18679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	1567	False	NA	-9	True	AATAAA	-17	NA	7693254	7675168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_7675525_7675992_7676139_7676230_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
ENSMUSG00000029759.10_5221508_5256233_1	chr6	-	1128	9	FSM	ENSMUSG00000029759.10	ENSMUST00000031773.9	1837	9	53	656	0	-656	multi-exon	FALSE	canonical	3	12	junction_4	13.4350288425444	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAACTGTAATTATTTAC	19	True	NA	NA	False	AGTAAA	-20	NA	5256233	5221507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_5221723_5230400_5230530_5230748_5230831_5232323_5232525_5236871_5236999_5240812_5240979_5246277_5246334_5254515_5254587_5256152
ENSMUSG00000029759.10_5232209_5256233_1	chr6	-	524	4	NIC	ENSMUSG00000029759.10	novel	2014	9	NA	NA	0	185	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	18.624953392932	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCATACTAAATTTGTGAT	19	True	NA	NA	False	AATAAA	-20	NA	5256233	5232208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_5232525_5246277_5246334_5254515_5254587_5256152
ENSMUSG00000029759.10_5246004_5256233_1	chr6	-	482	3	ISM	ENSMUSG00000029759.10	ENSMUST00000156848.8	921	5	-19	9571	0	8576	5prime_fragment	FALSE	canonical	3	44	junction_2	0.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGTCTCCAAACTGCTT	19	True	NA	NA	False	CATAAA	-28	NA	5256233	5246003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_5246334_5254515_5254587_5256152
ENSMUSG00000029761.17_34686425_34722890_1	chr6	+	692	3	ISM	ENSMUSG00000029761.17	ENSMUST00000031775.13	2142	13	-144	27739	0	3747	5prime_fragment	FALSE	canonical	3	208	junction_2	9	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAAAGGAAGAGGAGGA	1305	False	NA	NA	False	NA	NA	NA	34686424	34722890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_34686633_34718723_34718871_34722553
ENSMUSG00000029761.17_34686425_34723852_1	chr6	+	895	4	NNC	ENSMUSG00000029761.17	novel	4096	13	NA	NA	0	4709	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	100.677703589226	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGAATGTGGTGGGTT	1305	False	NA	NA	False	ATTAAA	-25	NA	34686424	34723852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_34686633_34718723_34718871_34722553_34722951_34723709
ENSMUSG00000029761.17_34686425_34732751_1	chr6	+	1081	5	ISM	ENSMUSG00000029761.17	ENSMUST00000115021.8	4041	12	48	19657	0	9	5prime_fragment	FALSE	canonical	3	149	junction_3	28.5252081499855	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGGAAGAGAGAAGGAAGG	1305	False	NA	18	True	AAGAAA	-3	NA	34686424	34732751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_34686633_34718723_34718871_34722553_34722951_34730377_34730524_34732568
ENSMUSG00000029761.17_34686569_34723852_1	chr6	+	751	4	NNC	ENSMUSG00000029761.17	novel	2142	13	NA	NA	0	4709	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	100.677703589226	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGAATGTGGTGGGTT	1449	False	NA	NA	False	ATTAAA	-25	NA	34686568	34723852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_34686633_34718723_34718871_34722553_34722951_34723709
ENSMUSG00000029763.18_33226063_33243309_1	chr6	+	546	2	ISM	ENSMUSG00000029763.18	ENSMUST00000139132.2	1060	6	-8	53022	0	-53022	5prime_fragment	FALSE	canonical	3	145	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33226062	33243309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_33226174_33242874
ENSMUSG00000029767.17_29348118_29376671_1	chr6	+	3213	7	FSM	ENSMUSG00000029767.17	ENSMUST00000090481.14	2670	7	0	-543	0	0	multi-exon	FALSE	canonical	3	300	junction_2	301.970979105977	1266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTATGTGTCTTTTATT	-1	True	NA	115	True	AATAAA	-19	NA	29348117	29376671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_29348208_29356469_29356697_29361558_29361753_29366038_29366206_29366915_29366977_29372469_29372670_29374397
ENSMUSG00000029771.13_29540826_29609615_1	chr6	+	3980	23	NIC	ENSMUSG00000029771.13	novel	403	2	NA	NA	-319	67745	intron_retention	TRUE	non_canonical	0	0	junction_1	0	510	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCGTTACCAGGGAAGGGG	3758	False	NA	NA	False	NA	NA	NA	29540825	29609615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
ENSMUSG00000029775.15_30439787_30450840_1	chr6	+	1077	8	ISM	ENSMUSG00000029775.15	ENSMUST00000144272.8	1387	10	22752	-27	-3982	0	3prime_fragment	FALSE	canonical	3	178	junction_6	13.6665837064016	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTTAGTTTATGGACAT	NA	False	NA	6	True	AATACA	-20	NA	30439786	30450840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_30439865_30441775_30441931_30444425_30444575_30446616_30446702_30447409_30447477_30447939_30447988_30449489_30449630_30450485
ENSMUSG00000029775.15_30439787_30450995_1	chr6	+	1232	8	ISM	ENSMUSG00000029775.15	ENSMUST00000144272.8	1387	10	22752	-182	-3982	155	3prime_fragment	FALSE	canonical	3	178	junction_6	13.6665837064016	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGAAATTGTTGCCTT	NA	False	NA	21	True	NA	NA	NA	30439786	30450995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_30439865_30441775_30441931_30444425_30444575_30446616_30446702_30447409_30447477_30447939_30447988_30449489_30449630_30450485
ENSMUSG00000029776.12_52523213_52617330_1	chr6	-	1776	8	NNC	ENSMUSG00000029776.12	novel	1825	8	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	363.353204224771	2390	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGAGCTTTTTGTTTT	2883	False	NA	-1	True	AATAAA	-20	NA	52617330	52523212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_52524048_52525799_52525957_52533422_52533500_52534763_52534898_52596961_52597079_52599835_52599946_52607173_52607335_52617145
ENSMUSG00000029776.12_52523213_52617330_2	chr6	-	1771	8	NNC	ENSMUSG00000029776.12	novel	1825	8	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_7	344.659548078437	2397	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGAGCTTTTTGTTTT	2883	False	NA	-1	True	AATAAA	-20	NA	52617330	52523212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_52524048_52525799_52525957_52533422_52533500_52534763_52534898_52596961_52597084_52599835_52599946_52607173_52607325_52617145
ENSMUSG00000029777.11_55054581_55056485_1	chr6	+	459	2	ISM	ENSMUSG00000029777.11	ENSMUST00000003572.10	2380	17	39589	0	27501	0	3prime_fragment	FALSE	canonical	3	3507	junction_1	0	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATCTGTTGTGTTTCCAT	NA	False	NA	35	True	ATTAAA	-29	NA	55054580	55056485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_55054759_55056204
ENSMUSG00000029777.11_55054740_55056485_1	chr6	+	300	2	ISM	ENSMUSG00000029777.11	ENSMUST00000003572.10	2380	17	39748	0	27660	0	3prime_fragment	FALSE	canonical	3	3507	junction_1	0	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATCTGTTGTGTTTCCAT	NA	False	NA	35	True	ATTAAA	-29	NA	55054739	55056485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_55054759_55056204
ENSMUSG00000029780.15_56859385_56900842_1	chr6	-	1656	10	FSM	ENSMUSG00000029780.15	ENSMUST00000152447.9	1067	10	-38	-551	0	0	multi-exon	FALSE	canonical	3	11	junction_9	88.9986821930458	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTTGTCCAGATCATAT	1279	False	NA	0	True	AATAAA	-26	NA	56900842	56859384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56874759_56874815_56900656
ENSMUSG00000029780.15_56859711_56900842_1	chr6	-	1330	10	FSM	ENSMUSG00000029780.15	ENSMUST00000152447.9	1067	10	-38	-225	0	225	multi-exon	FALSE	canonical	3	11	junction_9	88.9986821930458	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGAAAGATGGCTCCCTTT	1279	False	NA	NA	False	ATTAAA	-20	NA	56900842	56859710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56874759_56874815_56900656
ENSMUSG00000029780.15_56859711_56900842_2	chr6	-	1275	9	FSM	ENSMUSG00000029780.15	ENSMUST00000031793.8	1676	9	75	326	0	225	multi-exon	FALSE	canonical	3	204	junction_8	16.5486970786222	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGAAAGATGGCTCCCTTT	1279	False	NA	NA	False	ATTAAA	-20	NA	56900842	56859710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56900656
ENSMUSG00000029781.8_56809044_56855502_1	chr6	+	2168	10	FSM	ENSMUSG00000029781.8	ENSMUST00000031795.8	3009	10	0	841	0	-841	multi-exon	FALSE	canonical	3	670	junction_6	57.9369602069757	1495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATGTAGCTGTCATGGA	NA	False	NA	5	True	AATAAA	-17	NA	56809043	56855502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_56809413_56826622_56826769_56827547_56827738_56828346_56828493_56833217_56833408_56837640_56837787_56845704_56845892_56850351_56850498_56852653_56852818_56855018
ENSMUSG00000029790.17_30666027_30693748_1	chr6	-	596	5	ISM	ENSMUSG00000029790.17	ENSMUST00000115131.8	2256	10	-54	11650	0	0	5prime_fragment	FALSE	canonical	3	75	junction_2	11.5108644332213	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTAATGTCTTCTGCA	NA	False	NA	NA	False	AATATA	-18	NA	30693748	30666026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
ENSMUSG00000029798.12_57614856_57624151_1	chr6	+	261	3	NNC	ENSMUSG00000029798.12	novel	4767	23	NA	NA	27045	-17466	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	2.5	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGGTATGTATGTTTTC	5041	False	NA	NA	False	ATTAAA	-28	NA	57614855	57624151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_57614910_57623111_57623217_57624049
ENSMUSG00000029798.12_57614856_57640069_1	chr6	+	1523	11	NNC	ENSMUSG00000029798.12	novel	4767	23	NA	NA	27045	-1548	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	5.18555686498567	64	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGTAAAACATTTGCTGC	5041	False	NA	NA	False	AATAAA	-28	NA	57614855	57640069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_57614910_57623111_57623217_57624049_57624158_57629016_57629155_57631373_57631518_57634993_57635161_57636660_57636725_57637075_57637147_57639050_57639235_57639327_57639431_57639684
ENSMUSG00000029802.14_58572960_58669496_1	chr6	+	2257	17	NNC	ENSMUSG00000029802.14	novel	5717	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	52.4486355875918	220	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACATTATCTGTCACAT	NA	False	NA	76	True	NA	NA	NA	58572959	58669496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_58573003_58573993_58574094_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
ENSMUSG00000029802.14_58572960_58669496_2	chr6	+	2157	16	NIC	ENSMUSG00000029802.14	novel	600	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	43.6165106353087	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACATTATCTGTCACAT	NA	False	NA	76	True	NA	NA	NA	58572959	58669496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_58573003_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
ENSMUSG00000029802.14_58573656_58669496_1	chr6	+	2552	16	FSM	ENSMUSG00000029802.14	ENSMUST00000031822.13	5717	16	0	3165	0	0	multi-exon	FALSE	canonical	3	51	junction_1	36.1961323900773	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACATTATCTGTCACAT	NA	False	NA	76	True	NA	NA	NA	58573655	58669496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_58574094_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
ENSMUSG00000029802.14_58617531_58669496_1	chr6	+	2279	17	NIC	ENSMUSG00000029802.14	novel	2178	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	58.2246457696395	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACATTATCTGTCACAT	NA	False	NA	76	True	NA	NA	NA	58617530	58669496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_58617613_58627445_58627529_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
ENSMUSG00000029814.11_49064067_49191677_1	chr6	-	2221	15	FSM	ENSMUSG00000029814.11	ENSMUST00000031838.9	4345	15	214	1910	-39	995	multi-exon	FALSE	canonical	3	409	junction_14	48.9016610043012	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGTGG	NA	False	NA	NA	False	AATATA	-26	NA	49191677	49064066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49094085_49094368_49111628_49111693_49111780_49111833_49145403_49145453_49190200_49190262_49191230
ENSMUSG00000029814.11_49064077_49191648_1	chr6	-	1409	8	NNC	ENSMUSG00000029814.11	novel	4345	15	NA	NA	-10	985	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_7	190.173926837986	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATATA	-16	NA	49191648	49064076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082633_49191230
ENSMUSG00000029815.13_49050782_49061639_1	chr6	+	720	4	FSM	ENSMUSG00000029815.13	ENSMUST00000128616.6	2819	4	53	2046	0	27	multi-exon	FALSE	canonical	3	781	junction_1	29.2232783924049	5909	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCCCTTTGATATGACT	348	False	NA	6	True	AATAAA	-15	NA	49050781	49061639	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_49051038_49052019_49052199_49059778_49059861_49061436
ENSMUSG00000029816.11_49013599_49033719_1	chr6	+	2254	11	FSM	ENSMUSG00000029816.11	ENSMUST00000031840.10	3701	11	50	1397	0	-1397	multi-exon	FALSE	canonical	3	59	junction_4	6.96347614342147	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGTGATTATTATATTG	NA	False	NA	NA	False	ATTAAA	-16	NA	49013598	49033719	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_49013727_49019700_49019854_49020930_49021075_49022238_49022413_49024227_49024387_49024669_49025036_49027343_49027443_49027957_49028061_49028751_49028961_49032554_49032649_49033094
ENSMUSG00000029817.12_49220862_49222492_1	chr6	-	955	3	ISM	ENSMUSG00000029817.12	ENSMUST00000203820.3	2090	9	18453	4	18452	0	3prime_fragment	FALSE	canonical	3	544	junction_2	21.5	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	NA	False	NA	-8	True	AATAAA	-11	NA	49222492	49220861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_49221666_49221801_49221870_49222409
ENSMUSG00000029817.12_49220862_49240955_1	chr6	-	2383	8	NIC	ENSMUSG00000029817.12	novel	1799	8	NA	NA	9	0	intron_retention	FALSE	canonical	3	123	junction_7	139.301024799547	833	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	4602	False	NA	-8	True	AATAAA	-11	NA	49240955	49220861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49230043_49240771
ENSMUSG00000029817.12_49220862_49240955_2	chr6	-	2091	9	NNC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_7	181.788983095786	1210	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	4602	False	NA	-8	True	AATAAA	-11	NA	49240955	49220861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229741_49230043_49240771
ENSMUSG00000029817.12_49220862_49240955_3	chr6	-	2102	9	NNC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_7	180.182372889248	1086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	4602	False	NA	-8	True	AATAAA	-11	NA	49240955	49220861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229730_49230043_49240771
ENSMUSG00000029833.18_37935577_37943231_1	chr6	+	1074	4	ISM	ENSMUSG00000029833.18	ENSMUST00000120238.2	3258	19	58155	-364	10083	0	3prime_fragment	FALSE	canonical	3	507	junction_1	56.468280181591	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGTTATTGTTTTGTT	NA	False	NA	NA	False	ATTAAA	-21	NA	37935576	37943231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_37935630_37937715_37937791_37941637_37941788_37942435
ENSMUSG00000029836.16_51447643_51452725_1	chr6	+	615	4	NNC	ENSMUSG00000029836.16	novel	1889	6	NA	NA	0	504	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1170.73376800857	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGATAGCCTTAAACTCT	NA	False	NA	NA	False	NA	NA	NA	51447642	51452725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_51447720_51448795_51448849_51452210_51452643_51452672
ENSMUSG00000029836.16_51447643_51459667_1	chr6	+	739	6	FSM	ENSMUSG00000029836.16	ENSMUST00000031862.14	1889	6	133	1017	0	-346	multi-exon	FALSE	canonical	3	882	junction_5	643.207773584866	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGCATTCTAATGAAAATCA	NA	False	NA	NA	False	NA	NA	NA	51447642	51459667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
ENSMUSG00000029836.16_51447643_51460013_1	chr6	+	1085	6	FSM	ENSMUSG00000029836.16	ENSMUST00000031862.14	1889	6	133	671	0	0	multi-exon	FALSE	canonical	3	882	junction_5	643.207773584866	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTTTGTTTTTAACT	NA	False	NA	NA	False	CATAAA	-16	NA	51447642	51460013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
ENSMUSG00000029836.16_51447643_51460684_1	chr6	+	1721	6	NNC	ENSMUSG00000029836.16	novel	1889	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_3	948.65175907706	4156	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	False	NA	-1	True	AATAAA	-19	NA	51447642	51460684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_51447720_51448795_51448849_51452210_51452319_51455417_51455581_51458703_51458799_51459459
ENSMUSG00000029836.16_51447643_51460684_2	chr6	+	1756	6	FSM	ENSMUSG00000029836.16	ENSMUST00000031862.14	1889	6	133	0	0	0	multi-exon	FALSE	canonical	3	882	junction_5	643.207773584866	4512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	False	NA	-1	True	AATAAA	-19	NA	51447642	51460684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
ENSMUSG00000029848.12_34897895_34916279_1	chr6	+	1394	9	NIC	ENSMUSG00000029848.12	novel	1455	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	6	junction_2	25.8202924073295	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGGTGTCCTGGCAGT	NA	False	NA	13	True	TATAAA	-18	NA	34897894	34916279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_34897990_34904653_34904789_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
ENSMUSG00000029910.15_66512374_66518093_1	chr6	+	1446	6	FSM	ENSMUSG00000029910.15	ENSMUST00000116605.8	7557	6	0	6111	0	89	multi-exon	FALSE	canonical	3	769	junction_5	83.3273064487266	3245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTGGATGGATTGTGTT	NA	False	NA	29	True	AATATA	-19	NA	66512373	66518093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754_66516935_66517409
ENSMUSG00000029910.15_66512452_66518013_1	chr6	+	1200	6	NNC	ENSMUSG00000029910.15	novel	1725	5	NA	NA	0	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	369.381970323404	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGCCTTGTGTTTTAAAT	NA	False	NA	-51	True	TATAAA	-34	NA	66512451	66518013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754_66517060_66517622
ENSMUSG00000029910.15_66512452_66518013_2	chr6	+	1288	6	FSM	ENSMUSG00000029910.15	ENSMUST00000116605.8	7557	6	78	6191	0	9	multi-exon	FALSE	canonical	3	769	junction_5	83.3273064487266	3031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGCCTTGTGTTTTAAAT	NA	False	NA	-51	True	TATAAA	-34	NA	66512451	66518013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754_66516935_66517409
ENSMUSG00000029911.15_40448349_40457929_1	chr6	+	541	6	NIC	ENSMUSG00000029911.15	novel	1063	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_5	1123.6493403193	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTATATTTTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	40448348	40457929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_40448394_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40457786
ENSMUSG00000029911.15_40448349_40457929_2	chr6	+	625	7	NNC	ENSMUSG00000029911.15	novel	4398	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1038.11106502789	14722	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTATATTTTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	40448348	40457929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_40448389_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUSG00000029911.15_40448349_40457929_3	chr6	+	623	7	NNC	ENSMUSG00000029911.15	novel	4398	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	985.217404095834	9197	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTATATTTTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	40448348	40457929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_40448394_40449004_40449061_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUSG00000029911.15_40448402_40457929_1	chr6	+	814	7	NNC	ENSMUSG00000029911.15	novel	1188	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	22	junction_1	1030.09650303045	9164	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTATATTTTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	40448401	40457929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_40448631_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUSG00000029911.15_40448402_40457929_2	chr6	+	791	7	NNC	ENSMUSG00000029911.15	novel	1188	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1038.11106502789	14815	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTATATTTTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	40448401	40457929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_40448608_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUSG00000029911.15_40448402_40457929_3	chr6	+	605	7	NNC	ENSMUSG00000029911.15	novel	1188	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	1029.36805047239	8254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTATATTTTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	40448401	40457929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_40448422_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUSG00000029913.15_65904888_65913360_1	chr6	+	525	2	ISM	ENSMUSG00000029913.15	ENSMUST00000081219.14	984	6	148882	-3	-7187	0	3prime_fragment	FALSE	canonical	3	149	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGCTCTTGACTTTCTT	NA	False	NA	NA	False	ATTAAA	-14	NA	65904887	65913360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_65905006_65912953
ENSMUSG00000029916.12_40302419_40325179_1	chr6	+	857	4	NIC	ENSMUSG00000029916.12	novel	785	8	NA	NA	0	140	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	289.012494924047	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTTTAAGAATTTGATT	NA	False	NA	NA	False	AATAAA	-19	NA	40302418	40325179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_40302465_40306426_40306534_40324345_40324386_40324515
ENSMUSG00000029918.10_39779126_39787827_1	chr6	-	613	3	NNC	ENSMUSG00000029918.10	novel	1107	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	833	8968	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTGTTTAAGATTGGAA	NA	False	NA	-18	True	AATAAA	-12	NA	39787827	39779125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_39779479_39782304_39782546_39787808
ENSMUSG00000029920.10_65019605_65044450_1	chr6	+	1038	7	NNC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	0	28	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_6	142.526508255677	136	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTGTGCTGAATGTTTGG	1739	False	NA	NA	False	NA	NA	NA	65019604	65044450	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_65019715_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65044265
ENSMUSG00000029920.10_65019863_65044450_1	chr6	+	1011	7	NNC	ENSMUSG00000029920.10	novel	2821	10	NA	NA	0	28	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_6	143.665603244324	102	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTGTGCTGAATGTTTGG	1997	False	NA	NA	False	NA	NA	NA	65019862	65044450	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_65019946_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65044265
ENSMUSG00000029922.16_39375949_39377386_1	chr6	-	617	3	ISM	ENSMUSG00000029922.16	ENSMUST00000114823.8	2992	8	19324	1211	4278	128	3prime_fragment	FALSE	canonical	3	1457	junction_1	58	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTTGTAACATGAATTT	309	False	NA	-31	True	AATAAA	-12	NA	39377386	39375948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_39376369_39376731_39376871_39377328
ENSMUSG00000029922.16_39375949_39397234_1	chr6	-	1673	8	FSM	ENSMUSG00000029922.16	ENSMUST00000031985.13	3046	8	162	1211	-2	128	multi-exon	FALSE	canonical	3	1453	junction_3	1193.53149458715	1093	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTTGTAACATGAATTT	NA	False	NA	-31	True	AATAAA	-12	NA	39397234	39375948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
ENSMUSG00000029922.16_39375949_39397396_1	chr6	-	1835	8	FSM	ENSMUSG00000029922.16	ENSMUST00000031985.13	3046	8	0	1211	0	128	multi-exon	FALSE	canonical	3	1453	junction_3	1193.53149458715	1220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTTGTAACATGAATTT	NA	False	NA	-31	True	AATAAA	-12	NA	39397396	39375948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
ENSMUSG00000029922.16_39382473_39397064_1	chr6	-	842	3	ISM	ENSMUSG00000029922.16	ENSMUST00000122996.8	1485	5	-63	4785	-63	0	5prime_fragment	FALSE	canonical	3	157	junction_2	2093.5	1139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCCGAATGCTGTCCC	NA	False	NA	0	True	AATAAA	-25	NA	39397064	39382472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_39382895_39387021_39387151_39396773
ENSMUSG00000029922.16_39382473_39397064_2	chr6	-	583	3	FSM	ENSMUSG00000029922.16	ENSMUST00000114822.2	751	3	168	0	-63	0	multi-exon	FALSE	canonical	3	4055	junction_2	144.5	1069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCCGAATGCTGTCCC	NA	False	NA	0	True	AATAAA	-25	NA	39397064	39382472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_39382895_39387021_39387151_39397032
ENSMUSG00000029922.16_39382473_39397396_1	chr6	-	915	3	FSM	ENSMUSG00000029922.16	ENSMUST00000114822.2	751	3	-164	0	0	0	multi-exon	FALSE	canonical	3	4055	junction_2	144.5	6667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCCGAATGCTGTCCC	NA	False	NA	0	True	AATAAA	-25	NA	39397396	39382472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_39382895_39387021_39387151_39397032
ENSMUSG00000029924.13_39320553_39354628_1	chr6	-	2105	13	ISM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	-19	8846	-19	291	5prime_fragment	FALSE	canonical	3	160	junction_12	41.2501683498248	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTGACTGTATAATTAAA	NA	False	NA	1	True	AATAAA	-19	NA	39354628	39320552	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
ENSMUSG00000029992.15_87054163_87065263_1	chr6	+	801	6	ISM	ENSMUSG00000029992.15	ENSMUST00000032057.8	2286	20	34290	-39	373	39	3prime_fragment	FALSE	canonical	3	65	junction_2	25.083859352181	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTCCACTCAACTAATGA	NA	False	NA	NA	False	AGTAAA	-24	NA	87054162	87065263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_87054223_87059454_87059570_87062233_87062362_87063285_87063454_87064298_87064461_87065095
ENSMUSG00000029993.17_86986218_87005443_1	chr6	+	1173	9	NNC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_1	921.93755719951	12119	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	False	NA	25	True	AATAAA	-31	NA	86986217	87005443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_86986353_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
ENSMUSG00000029994.18_86728867_86770546_1	chr6	-	838	7	ISM	ENSMUSG00000029994.18	ENSMUST00000001187.15	2002	13	20	15044	0	-4414	5prime_fragment	FALSE	canonical	3	152	junction_6	16.4054530229704	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGTGTTTTAGATGTT	4626	False	NA	NA	False	NA	NA	NA	86770546	86728866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_86729215_86730784_86730876_86731834_86731949_86734800_86734896_86737655_86737744_86742743_86742790_86770490
ENSMUSG00000029998.15_86371029_86374101_1	chr6	-	891	3	ISM	ENSMUSG00000029998.15	ENSMUST00000204116.2	546	4	22	5376	0	471	5prime_fragment	FALSE	canonical	3	179	junction_1	16.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	86374101	86371028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_86371566_86372895_86373103_86373954
ENSMUSG00000029998.15_86372600_86374101_1	chr6	-	554	3	NNC	ENSMUSG00000029998.15	novel	485	2	NA	NA	0	165	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	104.5	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTAGCTATTTATTTTG	NA	False	NA	NA	False	ATTAAA	-21	NA	86374101	86372599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_86372800_86372895_86373103_86373954
ENSMUSG00000029998.15_86372600_86374101_2	chr6	-	650	2	FSM	ENSMUSG00000029998.15	ENSMUST00000203960.2	485	2	0	-165	0	165	multi-exon	FALSE	canonical	3	212	junction_1	0	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTAGCTATTTATTTTG	NA	False	NA	NA	False	ATTAAA	-21	NA	86374101	86372599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_86373103_86373954
ENSMUSG00000030002.16_85924494_85938625_1	chr6	-	1272	10	NNC	ENSMUSG00000030002.16	novel	6435	9	NA	NA	-1	231	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_6	97.2756043922449	236	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAGAAAACTTTCTGAACA	7344	False	NA	-33	True	AATAAA	-16	NA	85938625	85924493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_85924759_85926599_85926780_85926999_85927076_85927495_85927543_85929286_85929348_85930352_85930477_85932277_85932383_85935565_85935698_85936197_85936274_85938419
ENSMUSG00000030007.9_85423792_85428927_1	chr6	+	1056	5	NIC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	-4704	-3957	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTACCTCGGGAGCTAACC	NA	False	NA	NA	False	NA	NA	NA	85423791	85428927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_85424280_85424502_85424671_85424917_85425028_85425472_85425574_85428738
ENSMUSG00000030007.9_85429001_85445457_1	chr6	+	1927	12	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1794.1567185111	47474	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCTGCTGTGATGG	5115	False	NA	16	True	AGTAAA	-18	NA	85429000	85445457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441770_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
ENSMUSG00000030007.9_85429001_85445457_2	chr6	+	1936	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	505	0	0	0	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	57856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCTGCTGTGATGG	5115	False	NA	16	True	AGTAAA	-18	NA	85429000	85445457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
ENSMUSG00000030007.9_85429034_85445264_1	chr6	+	1710	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	538	193	0	0	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	1187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCGGTCTGCACCTCCTT	5148	False	NA	-87	True	NA	NA	NA	85429033	85445264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
ENSMUSG00000030007.9_85429034_85445457_1	chr6	+	1897	12	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1795.07751622491	43274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCTGCTGTGATGG	5148	False	NA	16	True	AGTAAA	-18	NA	85429033	85445457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_85429114_85436106_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
ENSMUSG00000030007.9_85429034_85445457_2	chr6	+	1893	12	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1787.48718310148	48771	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCTGCTGTGATGG	5148	False	NA	16	True	AGTAAA	-18	NA	85429033	85445457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443615_85443704_85444008_85444142_85444560_85444768_85445034
ENSMUSG00000030007.9_85429034_85445457_3	chr6	+	1893	12	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1795.07751622491	42301	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCTGCTGTGATGG	5148	False	NA	16	True	AGTAAA	-18	NA	85429033	85445457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_85429110_85436106_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
ENSMUSG00000030007.9_85429034_85445457_4	chr6	+	1894	12	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1772.09005330564	44725	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCTGCTGTGATGG	5148	False	NA	16	True	AGTAAA	-18	NA	85429033	85445457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442890_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
ENSMUSG00000030008.10_85423792_85428927_1	chr6	-	1279	4	NIC	ENSMUSG00000030008.10	novel	1000	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	68	junction_3	41.907305117631	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGGTTTGTGCCTGTGTCC	NA	False	NA	NA	False	AATAAA	-16	NA	85428927	85423791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_85424671_85424917_85425028_85425472_85425574_85428738
ENSMUSG00000030008.10_85423792_85428927_2	chr6	-	1398	4	FSM	ENSMUSG00000030008.10	ENSMUST00000139875.8	1000	4	0	-398	0	0	multi-exon	FALSE	canonical	3	19	junction_1	61.5593661074865	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGGTTTGTGCCTGTGTCC	NA	False	NA	NA	False	AATAAA	-16	NA	85428927	85423791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_85424790_85424917_85425028_85425472_85425574_85428738
ENSMUSG00000030032.15_83129691_83133361_1	chr6	-	1159	11	NNC	ENSMUSG00000030032.15	novel	1216	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_1	12.5574678976297	292	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTCTGAGCACTCAG	9900	False	NA	0	True	TATAAA	-18	NA	83133361	83129690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83129840_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132119_83132459_83132523_83132630_83132854_83133156_83133228_83133296
ENSMUSG00000030035.15_83096025_83098392_1	chr6	-	1755	4	FSM	ENSMUSG00000030035.15	ENSMUST00000131939.6	1902	4	148	-1	-5	0	multi-exon	FALSE	canonical	3	121	junction_3	19.1369334592098	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGATTCTGGGTAGAG	NA	False	NA	-7	True	ATTAAA	-17	NA	83098392	83096024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83096702_83096848_83097026_83097165_83097858_83098183
ENSMUSG00000030035.15_83096025_83098392_2	chr6	-	1268	5	FSM	ENSMUSG00000030035.15	ENSMUST00000146328.4	981	5	-24	-263	-5	0	multi-exon	TRUE	canonical	3	42	junction_4	48.7769156466458	991	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGATTCTGGGTAGAG	NA	False	NA	-7	True	ATTAAA	-17	NA	83098392	83096024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83097752_83097855_83098183
ENSMUSG00000030041.10_82923883_83007164_1	chr6	+	2053	10	NNC	ENSMUSG00000030041.10	novel	1945	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	229.298931528256	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTGTTCAGAGCATTCC	NA	False	NA	12	True	ATTAAA	-17	NA	82923882	83007164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_82924038_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982486_82982650_82983298_82983441_83003178_83003390_83005372_83005514_83006750
ENSMUSG00000030041.10_82933388_83007164_1	chr6	+	1896	9	ISM	ENSMUSG00000030041.10	ENSMUST00000113980.4	1945	10	9505	0	9505	0	3prime_fragment	FALSE	canonical	0	0	junction_7	187.106545516184	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTGTTCAGAGCATTCC	NA	False	NA	12	True	ATTAAA	-17	NA	82933387	83007164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982486_82982650_82983298_82983441_83003178_83003386_83005372_83005514_83006750
ENSMUSG00000030042.16_82595771_82682346_1	chr6	-	659	4	FSM	ENSMUSG00000030042.16	ENSMUST00000161309.8	457	4	0	-202	0	202	multi-exon	FALSE	canonical	3	132	junction_1	435.143909784134	1038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTGTTATGTCTCCCT	6109	False	NA	78	True	NA	NA	NA	82682346	82595770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_82596120_82628417_82628460_82629063_82629149_82682163
ENSMUSG00000030042.16_82595862_82682346_1	chr6	-	568	4	FSM	ENSMUSG00000030042.16	ENSMUST00000161309.8	457	4	0	-111	0	111	multi-exon	FALSE	canonical	3	132	junction_1	435.143909784134	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTTTTTCTTTTTCTT	6109	False	NA	-13	True	NA	NA	NA	82682346	82595861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_82596120_82628417_82628460_82629063_82629149_82682163
ENSMUSG00000030042.16_82624297_82629855_1	chr6	-	1099	4	FSM	ENSMUSG00000030042.16	ENSMUST00000095786.6	1769	4	55	615	-4	0	multi-exon	FALSE	canonical	3	735	junction_3	133.522365999941	7947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATGTGATATAAAATTT	NA	False	NA	-36	True	NA	NA	NA	82629855	82624296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_82625018_82628417_82628460_82629063_82629149_82629604
ENSMUSG00000030042.16_82624712_82629855_1	chr6	-	684	4	FSM	ENSMUSG00000030042.16	ENSMUST00000095786.6	1769	4	55	1030	-4	112	multi-exon	FALSE	canonical	3	735	junction_3	133.522365999941	4807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTTTTATATTGC	NA	False	NA	-1	True	AATAAA	-19	NA	82629855	82624711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_82625018_82628417_82628460_82629063_82629149_82629604
ENSMUSG00000030045.11_81938429_81938842_1	chr6	-	233	2	NNC	ENSMUSG00000030045.11	novel	5000	5	NA	NA	997	526	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCATGTCAGTTTATTG	NA	False	NA	NA	False	ATTAAA	-35	NA	81938842	81938428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_81938566_81938746
ENSMUSG00000030045.11_81938429_81942939_1	chr6	-	1375	5	NNC	ENSMUSG00000030045.11	novel	5000	5	NA	NA	0	526	intron_retention	FALSE	canonical	0	0	junction_1	285.72276773124	3415	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCATGTCAGTTTATTG	NA	False	NA	NA	False	ATTAAA	-35	NA	81942939	81938428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_81938566_81938746_81939479_81940914_81941050_81941219_81941339_81942687
ENSMUSG00000030045.11_81938552_81942939_2	chr6	-	1100	6	NNC	ENSMUSG00000030045.11	novel	5000	5	NA	NA	0	403	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	269.009293519759	3622	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTGTTCTGAGAATGCC	NA	False	NA	NA	False	NA	NA	NA	81942939	81938551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_81938559_81938738_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
ENSMUSG00000030051.11_87606731_87649046_1	chr6	-	1854	10	NIC	ENSMUSG00000030051.11	novel	1889	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	41	junction_3	13.2030673577893	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACCTTTGATCTTCTGC	NA	False	NA	-12	True	AATAAA	-15	NA	87649046	87606730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
ENSMUSG00000030056.9_87795429_87815682_1	chr6	-	1518	10	NIC	ENSMUSG00000030056.9	novel	5837	11	NA	NA	0	3061	combination_of_known_junctions	FALSE	canonical	2	5	junction_6	90.9278645037366	1301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTGCCTAGAGCTTGT	NA	False	NA	NA	False	ATTAAA	-22	NA	87815682	87795428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802471_87804565_87804679_87811409_87811476_87811924_87811977_87812709_87812733_87815625
ENSMUSG00000030056.9_87795429_87815682_2	chr6	-	1561	11	FSM	ENSMUSG00000030056.9	ENSMUST00000089497.7	5837	11	98	4178	0	3061	multi-exon	FALSE	canonical	3	216	junction_5	30.4276190327143	1441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTGCCTAGAGCTTGT	NA	False	NA	NA	False	ATTAAA	-22	NA	87815682	87795428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802471_87804565_87804679_87810623_87810667_87811409_87811476_87811924_87811977_87812709_87812733_87815625
ENSMUSG00000030056.9_87795429_87815723_3	chr6	-	1602	11	FSM	ENSMUSG00000030056.9	ENSMUST00000089497.7	5837	11	57	4178	-3	3061	multi-exon	FALSE	canonical	3	216	junction_5	30.4276190327143	1454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTGCCTAGAGCTTGT	NA	False	NA	NA	False	ATTAAA	-22	NA	87815723	87795428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802471_87804565_87804679_87810623_87810667_87811409_87811476_87811924_87811977_87812709_87812733_87815625
ENSMUSG00000030057.16_87820064_87828009_1	chr6	-	1629	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	79	467	0	0	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	23121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGACAGTTTGGACTT	NA	False	NA	-9	True	ATTAAA	-21	NA	87828009	87820063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
ENSMUSG00000030057.16_87820064_87828042_1	chr6	-	1662	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	46	467	0	0	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	25408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGACAGTTTGGACTT	NA	False	NA	-9	True	ATTAAA	-21	NA	87828042	87820063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
ENSMUSG00000030058.18_87864910_87889512_1	chr6	+	2961	24	FSM	ENSMUSG00000030058.18	ENSMUST00000113607.10	4140	24	114	1065	0	0	multi-exon	TRUE	canonical	0	0	junction_2	198.307183759023	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTTATACTCAAAGAAACC	NA	False	NA	1	True	AATAAA	-21	NA	87864909	87889512	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87871157_87872675_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881797_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
ENSMUSG00000030060.15_87890738_87913611_1	chr6	+	1481	7	NNC	ENSMUSG00000030060.15	novel	1572	6	NA	NA	-179	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	526.39858683532	4568	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGGCTCTCACCCAGTA	2785	False	NA	44	True	AATAAA	-30	NA	87890737	87913611	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_87890828_87891472_87891678_87894820_87894965_87898507_87898634_87902613_87902797_87910223_87910417_87913071
ENSMUSG00000030061.17_97160779_97182521_1	chr6	-	2359	18	FSM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	87	-189	0	0	multi-exon	FALSE	canonical	3	461	junction_17	79.0590861340176	1792	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTATAGTCAAGTCTC	NA	False	NA	-18	True	AGTAAA	-17	NA	97182521	97160778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266_97182309_97182493
ENSMUSG00000030061.17_97161713_97182521_1	chr6	-	1425	18	FSM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	87	745	0	-745	multi-exon	FALSE	canonical	3	461	junction_17	79.0590861340176	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCATAGAAATAATATACTT	NA	False	NA	NA	False	AATAAA	-19	NA	97182521	97161712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266_97182309_97182493
ENSMUSG00000030062.8_88061464_88080946_1	chr6	+	2293	10	FSM	ENSMUSG00000030062.8	ENSMUST00000032143.8	3633	10	0	1340	0	577	multi-exon	FALSE	canonical	3	2268	junction_5	110.706262438987	2365	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTGCTGTACTGAAAAA	537	False	NA	14	True	AATAAA	-20	NA	88061463	88080946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072698_88076255_88076356_88077610_88077750_88077843_88077964_88078956_88079203_88080346
ENSMUSG00000030083.12_88812896_88813602_1	chr6	-	635	2	ISM	ENSMUSG00000030083.12	ENSMUST00000032169.8	1845	12	5280	0	2095	0	3prime_fragment	FALSE	canonical	3	407	junction_1	0	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCCTGTTGTTGGGGT	NA	False	NA	-4	True	AATAAA	-21	NA	88813602	88812895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_88813435_88813506
ENSMUSG00000030083.12_88812896_88818819_1	chr6	-	1747	12	NIC	ENSMUSG00000030083.12	novel	1845	12	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	132.928800926295	1935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCCTGTTGTTGGGGT	7027	False	NA	-4	True	AATAAA	-21	NA	88818819	88812895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817854_88817883_88818750
ENSMUSG00000030086.17_89360128_89572634_1	chr6	-	1119	8	NNC	ENSMUSG00000030086.17	novel	1121	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	86.6503647671821	1549	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGTCACTTCTGTTGAC	NA	False	NA	0	True	AATAAA	-37	NA	89572634	89360127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_89360324_89361585_89361722_89396729_89396801_89444371_89444456_89544568_89544714_89546324_89546395_89551349_89551573_89572440
ENSMUSG00000030086.17_89360128_89572634_2	chr6	-	1121	8	NNC	ENSMUSG00000030086.17	novel	1121	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	86.6715592548875	1554	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGTCACTTCTGTTGAC	NA	False	NA	0	True	AATAAA	-37	NA	89572634	89360127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_89360331_89361585_89361722_89396729_89396801_89444371_89444451_89544568_89544714_89546324_89546395_89551349_89551573_89572440
ENSMUSG00000030088.16_90527771_90576151_1	chr6	+	3141	23	FSM	ENSMUSG00000030088.16	ENSMUST00000130418.8	4175	23	0	1034	0	0	multi-exon	FALSE	canonical	3	47	junction_1	39.2549675753126	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	NA	False	NA	13	True	AATAAA	-23	NA	90527770	90576151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_90527953_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
ENSMUSG00000030088.16_90548734_90576151_1	chr6	+	1707	12	ISM	ENSMUSG00000030088.16	ENSMUST00000204796.3	3025	23	20904	-9	4046	0	3prime_fragment	FALSE	canonical	3	182	junction_2	18.1799999090818	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	7923	False	NA	13	True	AATAAA	-23	NA	90548733	90576151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
ENSMUSG00000030089.16_90612302_90623394_2	chr6	+	1408	7	NNC	ENSMUSG00000030089.16	novel	2324	10	NA	NA	16173	0	at_least_one_novel_splicesite	TRUE	canonical	2	15	junction_6	13.490737563232	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGGTGTCCTCCATCCTTC	2825	False	NA	NA	False	AATAAA	-17	NA	90612301	90623394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_90612379_90613838_90613984_90617865_90617946_90619192_90619328_90621066_90621216_90622550_90623032_90623053
ENSMUSG00000030095.11_91450685_91464911_1	chr6	+	2369	12	FSM	ENSMUSG00000030095.11	ENSMUST00000032183.6	2903	12	0	534	0	-534	multi-exon	FALSE	canonical	3	107	junction_7	13.7209497779825	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCATTTCTAAGTTTCCTT	9688	False	NA	NA	False	AATAAA	-20	NA	91450684	91464911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_91450881_91454226_91454377_91455187_91455323_91455687_91455783_91456554_91456605_91456862_91456933_91457631_91457703_91458913_91459036_91459235_91459311_91459642_91459745_91462298_91462417_91463726
ENSMUSG00000030102.12_108190057_108218641_1	chr6	+	859	4	ISM	ENSMUSG00000030102.12	ENSMUST00000032192.9	9870	62	0	309429	0	-136123	5prime_fragment	FALSE	canonical	3	46	junction_3	9.67241208569794	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGGGA	NA	False	NA	NA	False	NA	NA	NA	108190056	108218641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_108190315_108191163_108191240_108213938_108214047_108218224
ENSMUSG00000030103.12_108637590_108642931_1	chr6	+	2158	5	FSM	ENSMUSG00000030103.12	ENSMUST00000032194.11	3113	5	0	955	0	305	multi-exon	FALSE	canonical	3	205	junction_3	24.2899156029822	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGCTTTTGTGAGTAGT	NA	False	NA	11	True	AATAAA	-23	NA	108637589	108642931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_108637954_108638121_108638192_108638465_108638574_108639481_108639606_108641439
ENSMUSG00000030103.12_108637590_108643734_1	chr6	+	2961	5	FSM	ENSMUSG00000030103.12	ENSMUST00000032194.11	3113	5	0	152	0	-152	multi-exon	FALSE	canonical	3	205	junction_3	24.2899156029822	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAAATGGTCTCCTTGGTT	NA	False	NA	10	True	AATAAA	-22	NA	108637589	108643734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_108637954_108638121_108638192_108638465_108638574_108639481_108639606_108641439
ENSMUSG00000030104.10_108823651_108832725_1	chr6	+	1122	7	ISM	ENSMUSG00000030104.10	ENSMUST00000089162.5	5817	12	18016	3584	-1942	239	3prime_fragment	FALSE	canonical	3	304	junction_4	17.1269767715535	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGAAATGGGAAGCTTCGT	1312	False	NA	NA	False	AATAAA	-28	NA	108823650	108832725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_108823808_108825670_108825792_108826355_108826527_108828170_108828245_108829450_108829548_108831205_108831410_108832427
ENSMUSG00000030116.15_122498797_122505591_1	chr6	+	567	4	ISM	ENSMUSG00000030116.15	ENSMUST00000118626.8	748	9	8179	0	-661	0	3prime_fragment	FALSE	canonical	1	2	junction_1	68.5921926234239	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	7070	False	NA	4	True	AATACA	-15	NA	122498796	122505591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_122498888_122502909_122502998_122503745_122503820_122505277
ENSMUSG00000030116.15_122498797_122506253_1	chr6	+	1229	4	ISM	ENSMUSG00000030116.15	ENSMUST00000118626.8	748	9	8179	-662	-661	4	3prime_fragment	FALSE	canonical	1	2	junction_1	68.5921926234239	679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCACGGGCATGTTTTATT	7070	False	NA	NA	False	AAAAAG	-4	NA	122498796	122506253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_122498888_122502909_122502998_122503745_122503820_122505277
ENSMUSG00000030116.15_122499817_122505591_2	chr6	+	509	4	NNC	ENSMUSG00000030116.15	novel	2491	4	NA	NA	359	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	69.5317673201729	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	8090	False	NA	4	True	AATACA	-15	NA	122499816	122505591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_122499850_122502909_122502998_122503745_122503820_122505277
ENSMUSG00000030116.15_122499817_122505591_3	chr6	+	533	5	NNC	ENSMUSG00000030116.15	novel	2491	4	NA	NA	359	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_1	33.0331273118365	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	8090	False	NA	4	True	AATACA	-15	NA	122499816	122505591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_122499850_122501445_122501470_122502909_122502998_122503745_122503820_122505277
ENSMUSG00000030116.15_122499817_122506253_2	chr6	+	1195	5	NNC	ENSMUSG00000030116.15	novel	2491	4	NA	NA	359	4	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_1	33.0331273118365	1059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCACGGGCATGTTTTATT	8090	False	NA	NA	False	AAAAAG	-4	NA	122499816	122506253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_122499850_122501445_122501470_122502909_122502998_122503745_122503820_122505277
ENSMUSG00000030117.6_122583206_122586818_1	chr6	-	1053	2	FSM	ENSMUSG00000030117.6	ENSMUST00000032211.5	2125	2	228	844	-35	-844	multi-exon	FALSE	canonical	3	704	junction_1	0	1310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGCTTATGCTCTCTT	10002	False	NA	-27	True	AATAAA	-13	NA	122586818	122583205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_122584095_122586654
ENSMUSG00000030117.6_122583206_122587046_1	chr6	-	1281	2	FSM	ENSMUSG00000030117.6	ENSMUST00000032211.5	2125	2	0	844	0	-844	multi-exon	FALSE	canonical	3	704	junction_1	0	4542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGCTTATGCTCTCTT	9980	False	NA	-27	True	AATAAA	-13	NA	122587046	122583205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_122584095_122586654
ENSMUSG00000030117.6_122583206_122587102_1	chr6	-	1337	2	FSM	ENSMUSG00000030117.6	ENSMUST00000032211.5	2125	2	-56	844	-56	-844	multi-exon	FALSE	canonical	3	704	junction_1	0	4568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGCTTATGCTCTCTT	9924	False	NA	-27	True	AATAAA	-13	NA	122587102	122583205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_122584095_122586654
ENSMUSG00000030122.13_124890644_124892503_1	chr6	-	943	5	NIC	ENSMUSG00000030122.13	novel	1149	5	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	272.08764672436	1050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTCTCCTGCTTTCCCGC	NA	False	NA	-6	True	AATAAA	-26	NA	124892503	124890643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124892322
ENSMUSG00000030122.13_124890644_124892566_1	chr6	-	822	5	NNC	ENSMUSG00000030122.13	novel	1149	5	NA	NA	-74	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_4	271.262211706681	984	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTCTCCTGCTTTCCCGC	NA	False	NA	-6	True	AATAAA	-26	NA	124892566	124890643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124892506
ENSMUSG00000030122.13_124890644_124892566_2	chr6	-	894	5	NNC	ENSMUSG00000030122.13	novel	1149	5	NA	NA	-74	0	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_4	274.15232991897	1031	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTCTCCTGCTTTCCCGC	NA	False	NA	-6	True	AATAAA	-26	NA	124892566	124890643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124892434
ENSMUSG00000030124.3_124881324_124882109_1	chr6	-	549	2	ISM	ENSMUSG00000030124.3	ENSMUST00000032217.2	2001	8	6559	0	4905	0	3prime_fragment	FALSE	canonical	3	14	junction_1	0	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAAGCTGGAGTCTGTCT	6095	False	NA	NA	False	AATAAA	-18	NA	124882109	124881323	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_124881564_124881800
ENSMUSG00000030126.18_116150591_116151475_1	chr6	-	794	2	Genic_Genomic	ENSMUSG00000030126.18	novel	2697	1	NA	NA	-201	-2013	multi-exon	FALSE	non_canonical	0	0	junction_1	0	781	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTTTGGTTATTATGTAA	NA	False	NA	NA	False	NA	NA	NA	116151475	116150590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_116150932_116151022
ENSMUSG00000030127.16_124935376_124942253_1	chr6	-	1263	8	NIC	ENSMUSG00000030127.16	novel	1328	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	167	junction_7	695.556714335461	1362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATGTATGCCAGGAGAT	NA	False	NA	-16	True	ATTAAA	-13	NA	124942253	124935375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_124935736_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942181
ENSMUSG00000030127.16_124935376_124942475_1	chr6	-	2167	8	NIC	ENSMUSG00000030127.16	novel	1328	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	1123	junction_1	272.823034517369	3436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATGTATGCCAGGAGAT	NA	False	NA	-16	True	ATTAAA	-13	NA	124942475	124935375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
ENSMUSG00000030127.16_124935779_124942253_1	chr6	-	1725	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	167	junction_7	583.751379843669	1416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942253	124935778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942181
ENSMUSG00000030127.16_124935779_124942253_2	chr6	-	1792	8	NNC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_7	623.446346479611	1437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942253	124935778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942114
ENSMUSG00000030127.16_124935779_124942411_1	chr6	-	1700	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	1123	junction_1	272.823034517369	3067	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942411	124935778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
ENSMUSG00000030127.16_124935779_124942475_1	chr6	-	1559	7	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	57	junction_6	644.566951957324	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942475	124935778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124942364
ENSMUSG00000030127.16_124935779_124942475_2	chr6	-	1764	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	1123	junction_1	272.823034517369	3257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942475	124935778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
ENSMUSG00000030137.9_121179183_121203112_1	chr6	+	1679	5	NNC	ENSMUSG00000030137.9	novel	2263	5	NA	NA	-8472	-701	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	2.06155281280883	214	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTCAGACACCCAGCTGC	NA	False	NA	59	True	NA	NA	NA	121179182	121203112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_121179441_121197342_121197566_121198259_121198409_121199692_121200374_121202744
ENSMUSG00000030137.9_121179288_121203112_1	chr6	+	1574	5	NNC	ENSMUSG00000030137.9	novel	2263	5	NA	NA	-8367	-701	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	2.06155281280883	209	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTCAGACACCCAGCTGC	NA	False	NA	59	True	NA	NA	NA	121179287	121203112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_121179441_121197342_121197566_121198259_121198409_121199692_121200374_121202744
ENSMUSG00000030161.9_129510163_129518266_1	chr6	+	737	4	FSM	ENSMUSG00000030161.9	ENSMUST00000032264.9	1820	4	40	1043	0	66	multi-exon	FALSE	canonical	3	115	junction_2	5.71547606649408	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGCTGTCGTCTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	129510162	129518266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_129510500_129514453_129514533_129515532_129515652_129518064
ENSMUSG00000030161.9_129510163_129518471_1	chr6	+	942	4	FSM	ENSMUSG00000030161.9	ENSMUST00000032264.9	1820	4	40	838	0	2	multi-exon	FALSE	canonical	3	115	junction_2	5.71547606649408	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCGGCTCTTTGGGCAGA	NA	False	NA	NA	False	AATACA	-13	NA	129510162	129518471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_129510500_129514453_129514533_129515532_129515652_129518064
ENSMUSG00000030168.14_119332232_119394473_1	chr6	-	1871	8	FSM	ENSMUSG00000030168.14	ENSMUST00000032272.13	4184	8	192	2121	-37	195	multi-exon	TRUE	canonical	3	26	junction_7	32.1685611510775	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATGTAAATAAGATTTCT	7517	False	NA	NA	False	AAGAAA	-1	NA	119394473	119332231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_119332890_119334176_119334371_119335882_119336071_119336311_119336499_119338788_119338961_119342221_119342342_119347110_119347370_119394380
ENSMUSG00000030177.15_120301284_120302222_1	chr6	-	908	2	NNC	ENSMUSG00000030177.15	novel	2458	10	NA	NA	25129	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	503	False	NA	-14	True	AATAAA	-18	NA	120302222	120301283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_120302105_120302135
ENSMUSG00000030177.15_120301284_120302378_1	chr6	-	1064	2	NNC	ENSMUSG00000030177.15	novel	2458	10	NA	NA	24973	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	347	False	NA	-14	True	AATAAA	-18	NA	120302378	120301283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_120302105_120302135
ENSMUSG00000030188.13_131261476_131270207_1	chr6	-	642	5	FSM	ENSMUSG00000030188.13	ENSMUST00000032307.12	767	5	0	125	0	0	multi-exon	FALSE	canonical	2	356	junction_3	64.3059095262636	5287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGGTTACATGGTTTTTA	NA	False	NA	NA	False	TATAAA	-19	NA	131270207	131261475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_131261692_131262605_131262689_131264998_131265110_131266351_131266411_131270034
ENSMUSG00000030189.16_131341818_131344807_1	chr6	-	631	2	ISM	ENSMUSG00000030189.16	ENSMUST00000203157.2	1035	3	1174	-245	1174	0	3prime_fragment	FALSE	canonical	3	3275	junction_1	0	628	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTGTAACTAGTGTGTA	8776	False	NA	-9	True	AATAAA	-21	NA	131344807	131341817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_131342369_131344727
ENSMUSG00000030189.16_131341818_131357890_1	chr6	-	1291	7	NNC	ENSMUSG00000030189.16	novel	1853	10	NA	NA	-2425	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1108.27685319749	1139	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTGTAACTAGTGTGTA	9952	False	NA	-9	True	AATAAA	-21	NA	131357890	131341817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_131342369_131344727_131344827_131345351_131345524_131347285_131347378_131352936_131353144_131356325_131356444_131357838
ENSMUSG00000030200.14_134391428_134415704_1	chr6	+	2167	6	FSM	ENSMUSG00000030200.14	ENSMUST00000111960.2	1578	6	37	-626	0	5	multi-exon	FALSE	canonical	3	57	junction_3	10	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTGCCTGTAACCCAAGC	NA	False	NA	18	True	AATAAA	-30	NA	134391427	134415704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_134391599_134400573_134401026_134404258_134404424_134407028_134407100_134409108_134409376_134414663
ENSMUSG00000030204.11_134988598_135000739_1	chr6	+	1734	12	NNC	ENSMUSG00000030204.11	novel	1764	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	157.795191035879	1326	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTCTGTGTGTGCACT	6597	False	NA	20	True	ATTAAA	-20	NA	134988597	135000739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992604_134992784_134992904_134993544_134993617_134994083_134994201_134995013_134995161_134995936_134996075_134997578_134997650_134998411_134998542_135000241
ENSMUSG00000030213.13_136495844_136537227_1	chr6	+	584	2	ISM	ENSMUSG00000030213.13	ENSMUST00000032335.13	8059	15	44	50633	0	136	5prime_fragment	FALSE	canonical	3	179	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGACAACCCAGCCTCTGA	7092	False	NA	NA	False	NA	NA	NA	136495843	136537227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_136495962_136536761
ENSMUSG00000030216.13_136790652_136805141_1	chr6	-	2636	11	NNC	ENSMUSG00000030216.13	novel	2739	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	531.287125761579	743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGTGTTTGTGTAATG	2922	False	NA	-1	True	AATAAA	-19	NA	136805141	136790651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_136791640_136793048_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802979_136803108_136805017
ENSMUSG00000030224.11_137712076_137728094_1	chr6	+	1814	10	FSM	ENSMUSG00000030224.11	ENSMUST00000064910.7	2650	10	0	836	0	420	multi-exon	FALSE	canonical	3	757	junction_9	58.2073772423402	1432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATTTTTCTCTTTTTTTGG	NA	False	NA	89	True	AATAAA	-16	NA	137712075	137728094	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_137712465_137713327_137713464_137716355_137716438_137716752_137716826_137718300_137718398_137718949_137719088_137722504_137722642_137725684_137725835_137726361_137726428_137727548
ENSMUSG00000030224.11_137712076_137728264_1	chr6	+	1984	10	FSM	ENSMUSG00000030224.11	ENSMUST00000064910.7	2650	10	0	666	0	590	multi-exon	FALSE	canonical	3	757	junction_9	58.2073772423402	1443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTGTTGTGTGTTCATT	NA	False	NA	18	True	TTTAAA	-16	NA	137712075	137728264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_137712465_137713327_137713464_137716355_137716438_137716752_137716826_137718300_137718398_137718949_137719088_137722504_137722642_137725684_137725835_137726361_137726428_137727548
ENSMUSG00000030225.12_137731556_137814328_1	chr6	+	1165	9	FSM	ENSMUSG00000030225.12	ENSMUST00000087675.9	1729	9	0	564	0	-106	multi-exon	FALSE	canonical	3	541	junction_6	37.3511629671688	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGAATCTAAATGTGGATT	NA	False	NA	2	True	AATAAA	-14	NA	137731555	137814328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_137731637_137755121_137755220_137756507_137756656_137757727_137757824_137759926_137760062_137773751_137773881_137807190_137807304_137813731_137813882_137814113
ENSMUSG00000030225.12_137731556_137814434_1	chr6	+	1271	9	FSM	ENSMUSG00000030225.12	ENSMUST00000087675.9	1729	9	0	458	0	0	multi-exon	FALSE	canonical	3	541	junction_6	37.3511629671688	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATGTTTCTAGTAGC	NA	False	NA	108	True	NA	NA	NA	137731555	137814434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_137731637_137755121_137755220_137756507_137756656_137757727_137757824_137759926_137760062_137773751_137773881_137807190_137807304_137813731_137813882_137814113
ENSMUSG00000030231.12_140369887_140420704_1	chr6	+	351	4	NNC	ENSMUSG00000030231.12	novel	3006	23	NA	NA	0	-78051	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	45.3063645271464	78	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTATTTCTAATTAGTAT	NA	False	NA	NA	False	NA	NA	NA	140369886	140420704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_140369983_140370102_140370183_140372223_140372282_140420587
ENSMUSG00000030243.17_142291380_142307881_1	chr6	-	1729	12	NIC	ENSMUSG00000030243.17	novel	3389	15	NA	NA	1419	4688	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	488	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCACTTCCGGCGCTCGGG	NA	False	NA	NA	False	NA	NA	NA	142307881	142291379	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_142291534_142293283_142293365_142294248_142294369_142296787_142296917_142299250_142299325_142300350_142300512_142302208_142302310_142303105_142303239_142304124_142304238_142304761_142304885_142306584_142306723_142307479
ENSMUSG00000030245.11_142332947_142347862_1	chr6	+	1060	6	NNC	ENSMUSG00000030245.11	novel	2818	5	NA	NA	0	426	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	283.233190145505	363	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTGGAGCCAGATAAAA	NA	False	NA	75	True	AATAAA	-27	NA	142332946	142347862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_142333096_142338055_142338148_142339653_142339729_142339832_142339901_142341913_142341996_142347268
ENSMUSG00000030245.11_142332947_142347862_2	chr6	+	825	3	FSM	ENSMUSG00000030245.11	ENSMUST00000146508.2	367	3	-32	-426	0	426	multi-exon	FALSE	canonical	3	32	junction_1	306	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTGGAGCCAGATAAAA	NA	False	NA	75	True	AATAAA	-27	NA	142332946	142347862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_142333096_142341913_142341996_142347268
ENSMUSG00000030246.13_142435978_142453669_1	chr6	-	1163	7	NIC	ENSMUSG00000030246.13	novel	1287	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	308.522104376476	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTTCTGCCTGCCTTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	142453669	142435977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_142436331_142439825_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
ENSMUSG00000030264.15_113023318_113045234_1	chr6	+	2014	10	NNC	ENSMUSG00000030264.15	novel	2163	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	226.77742392046	1932	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	3	True	ATTAAA	-16	NA	113023317	113045234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_113023335_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
ENSMUSG00000030264.15_113023318_113045234_2	chr6	+	2031	10	FSM	ENSMUSG00000030264.15	ENSMUST00000032398.15	2163	10	132	0	0	0	multi-exon	FALSE	canonical	3	600	junction_1	54.2445309298778	2139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	3	True	ATTAAA	-16	NA	113023317	113045234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_113023352_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
ENSMUSG00000030264.15_113023419_113028000_1	chr6	+	653	4	NIC	ENSMUSG00000030264.15	novel	649	3	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	72	junction_3	333.530941426562	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTGTTGTTGTTTTTC	NA	False	NA	30	True	ATTAAA	-24	NA	113023418	113028000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_113023421_113024375_113024666_113026299_113026378_113027717
ENSMUSG00000030265.15_145165706_145180077_1	chr6	-	1009	3	ISM	ENSMUSG00000030265.15	ENSMUST00000032399.12	4678	5	15888	3281	-3527	0	3prime_fragment	FALSE	canonical	3	862	junction_1	24.5	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGTTAGCTAAATTACTG	NA	False	NA	NA	False	AAAAAG	-32	NA	145180077	145165705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_145166451_145177820_145177981_145179973
ENSMUSG00000030268.18_144944884_145021779_2	chr6	-	2425	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	131	0	131	0	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	1868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTCTGGATTTGAATC	8616	False	NA	-24	True	AATAAA	-16	NA	145021779	144944883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
ENSMUSG00000030268.18_144980267_145021779_1	chr6	-	549	4	ISM	ENSMUSG00000030268.18	ENSMUST00000048252.11	1642	10	131	30423	131	-1668	5prime_fragment	FALSE	canonical	3	4066	junction_2	115.20513105857	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAACATTTGCATTCCC	8616	False	NA	NA	False	NA	NA	NA	145021779	144980266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_144980378_144985160_144985362_144993017_144993090_145021614
ENSMUSG00000030271.15_113303960_113311149_1	chr6	+	1371	6	NIC	ENSMUSG00000030271.15	novel	1549	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_4	90.4464482442511	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGTGAAGAGTGAGAGGG	2335	False	NA	14	True	AATAAA	-23	NA	113303959	113311149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_113304324_113305325_113305574_113306189_113306370_113308731_113308914_113310591_113310642_113310802
ENSMUSG00000030271.15_113304195_113311149_3	chr6	+	1287	7	FSM	ENSMUSG00000030271.15	ENSMUST00000032406.15	1549	7	262	0	123	0	multi-exon	FALSE	canonical	3	196	junction_2	21.4534379529249	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGTGAAGAGTGAGAGGG	2570	False	NA	14	True	AATAAA	-23	NA	113304194	113311149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_113304324_113305325_113305574_113306189_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
ENSMUSG00000030272.16_113303960_113311149_1	chr6	-	1389	7	NIC	ENSMUSG00000030272.16	novel	1486	11	NA	NA	2433	7125	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTGCAGCACGCCCCGC	NA	False	NA	NA	False	NA	NA	NA	113311149	113303959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_113304324_113305325_113305441_113306189_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
ENSMUSG00000030282.15_142710019_142721440_1	chr6	+	1413	7	ISM	ENSMUSG00000030282.15	ENSMUST00000032419.9	1760	8	7607	0	-5673	0	3prime_fragment	FALSE	canonical	3	681	junction_6	58.9559628498726	340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGTACTGTAAGACCT	NA	False	NA	33	True	AATAAA	-22	NA	142710018	142721440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_142710156_142710279_142710436_142713529_142713664_142716248_142716344_142716891_142717064_142717840_142717995_142720875
ENSMUSG00000030286.7_113492478_113508595_1	chr6	-	1324	8	FSM	ENSMUSG00000030286.7	ENSMUST00000032425.7	1985	8	18	643	-16	-643	multi-exon	FALSE	canonical	3	306	junction_2	13.3386044002714	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCTGCATTTTACCTTGA	NA	False	NA	-19	True	AGTAAA	-24	NA	113508595	113492477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_113492993_113494057_113494141_113494842_113494923_113496875_113496958_113497437_113497543_113499274_113499369_113499710_113499769_113508288
ENSMUSG00000030286.7_113492763_113508595_1	chr6	-	1039	8	FSM	ENSMUSG00000030286.7	ENSMUST00000032425.7	1985	8	18	928	-16	-928	multi-exon	FALSE	canonical	3	306	junction_2	13.3386044002714	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGGGTGCAGCAAGGCTC	NA	False	NA	-10	True	AATAAA	-18	NA	113508595	113492762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_113492993_113494057_113494141_113494842_113494923_113496875_113496958_113497437_113497543_113499274_113499369_113499710_113499769_113508288
ENSMUSG00000030291.13_146544078_146551970_1	chr6	+	651	4	FSM	ENSMUSG00000030291.13	ENSMUST00000032429.9	814	4	33	130	0	-130	multi-exon	FALSE	canonical	3	254	junction_3	35.4902177445498	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGACTCATCTTCAAACA	NA	False	NA	-94	True	AGTAAA	-16	NA	146544077	146551970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_146544151_146549662_146549778_146550647_146550749_146551608
ENSMUSG00000030298.11_113705023_113717688_1	chr6	-	1156	8	NNC	ENSMUSG00000030298.11	novel	1353	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	374.229003337229	796	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCATCCCACACAGTGAG	5	True	NA	-10	True	AATAAA	-23	NA	113717688	113705022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_113705425_113706556_113706704_113707295_113707420_113707734_113707869_113711506_113711616_113713336_113713449_113714914_113714960_113717605
ENSMUSG00000030298.11_113705023_113717688_2	chr6	-	1334	9	NNC	ENSMUSG00000030298.11	novel	1353	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	352.200382417453	7195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCATCCCACACAGTGAG	5	True	NA	-10	True	AATAAA	-23	NA	113717688	113705022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_113705425_113706556_113706704_113707295_113707413_113707730_113707869_113711506_113711641_113712017_113712170_113713332_113713449_113714914_113714960_113717605
ENSMUSG00000030303.16_148081541_148113520_1	chr6	+	2858	14	NIC	ENSMUSG00000030303.16	novel	3395	13	NA	NA	132627	29264	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCCCGGCGCACACGAAGA	NA	False	NA	NA	False	NA	NA	NA	148081540	148113520	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
ENSMUSG00000030303.16_148082808_148113520_1	chr6	+	1591	14	NIC	ENSMUSG00000030303.16	novel	3395	13	NA	NA	133894	29264	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	864	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCCCGGCGCACACGAAGA	NA	False	NA	NA	False	NA	NA	NA	148082807	148113520	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
ENSMUSG00000030303.16_148082808_148113520_2	chr6	+	1520	13	NIC	ENSMUSG00000030303.16	novel	3395	13	NA	NA	133894	29264	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	77	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCCCGGCGCACACGAAGA	NA	False	NA	NA	False	NA	NA	NA	148082807	148113520	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148103993_148104041_148106273_148106383_148108030_148108174_148113467
ENSMUSG00000030303.16_148083143_148113520_1	chr6	+	1256	14	NIC	ENSMUSG00000030303.16	novel	3395	13	NA	NA	134229	29264	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCCCGGCGCACACGAAGA	NA	False	NA	NA	False	NA	NA	NA	148083142	148113520	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
ENSMUSG00000030304.12_148082808_148113520_1	chr6	-	1702	15	NIC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_13	326.611866325291	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAGATGTCAGAATAAAA	NA	False	NA	-65	True	GATAAA	-25	NA	148113520	148082807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148107597_148107709_148108030_148108174_148113467
ENSMUSG00000030304.12_148082808_148113520_3	chr6	-	1561	14	NIC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_4	251.358274676846	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAGATGTCAGAATAAAA	NA	False	NA	-65	True	GATAAA	-25	NA	148113520	148082807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089599_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
ENSMUSG00000030314.17_114620090_114836185_1	chr6	+	2392	20	NIC	ENSMUSG00000030314.17	novel	2543	21	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	29.4466041008941	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCTCAGGTCCTTCC	NA	False	NA	6	True	NA	NA	NA	114620089	114836185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_114620112_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
ENSMUSG00000030315.16_114839034_114946955_1	chr6	-	1232	6	NIC	ENSMUSG00000030315.16	novel	860	5	NA	NA	0	118	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	0.489897948556636	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGGGGGAGGGTGGGTG	NA	False	NA	NA	False	NA	NA	NA	114946955	114839033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_114839398_114839716_114839841_114840844_114841041_114867577_114867768_114934896_114934973_114946673
ENSMUSG00000030316.14_114981156_115014816_1	chr6	-	1333	8	FSM	ENSMUSG00000030316.14	ENSMUST00000032461.12	1168	8	21	-186	0	186	multi-exon	FALSE	canonical	3	439	junction_6	13.6695699587494	2001	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCTATGGTTGATTT	NA	False	NA	NA	False	NA	NA	NA	115014816	114981155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002386_115009180_115009274_115011911_115012095_115014610
ENSMUSG00000030316.14_114981342_115014816_1	chr6	-	1145	8	NNC	ENSMUSG00000030316.14	novel	1168	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	162.761626124758	1903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCACTCTGACTGGCT	NA	False	NA	-34	True	AATAAA	-25	NA	115014816	114981341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002380_115009176_115009274_115011911_115012095_115014610
ENSMUSG00000030316.14_114981342_115014816_2	chr6	-	1001	7	NIC	ENSMUSG00000030316.14	novel	1168	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	171.269200059114	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCACTCTGACTGGCT	NA	False	NA	-34	True	AATAAA	-25	NA	115014816	114981341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_114981481_114987767_114987831_114989118_114989285_115002234_115002386_115009180_115009274_115011911_115012095_115014610
ENSMUSG00000030316.14_115006534_115014816_1	chr6	-	973	4	NNC	ENSMUSG00000030316.14	novel	1168	8	NA	NA	0	1705	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	209.587425407368	165	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGATGATGATATGTGA	NA	False	NA	NA	False	NA	NA	NA	115014816	115006533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_115007025_115009180_115009274_115011911_115012095_115014610
ENSMUSG00000030316.14_115007420_115014816_1	chr6	-	1786	4	NIC	ENSMUSG00000030316.14	novel	531	2	NA	NA	0	819	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	196.862614248843	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCAAATGTTTCCTTA	NA	False	NA	5	True	ATTAAA	-25	NA	115014816	115007419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_115008724_115009180_115009274_115011911_115012095_115014610
ENSMUSG00000030319.9_115782473_115785708_1	chr6	+	510	4	NIC	ENSMUSG00000030319.9	novel	5474	15	NA	NA	30974	3190	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	221179	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCGGCGGCGGCGCGCAAG	7886	False	NA	NA	False	AAAACA	-42	NA	115782472	115785708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_115782650_115783946_115784129_115784762_115784864_115785658
ENSMUSG00000030319.9_115782473_115785708_2	chr6	+	490	4	NNC	ENSMUSG00000030319.9	novel	5474	15	NA	NA	30974	3190	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	28993	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCGGCGGCGGCGCGCAAG	7886	False	NA	NA	False	AAAACA	-42	NA	115782472	115785708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_115782650_115783966_115784129_115784762_115784864_115785658
ENSMUSG00000030319.9_115782473_115785708_3	chr6	+	517	4	NNC	ENSMUSG00000030319.9	novel	5474	15	NA	NA	30974	3190	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	189001	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCGGCGGCGGCGCGCAAG	7886	False	NA	NA	False	AAAACA	-42	NA	115782472	115785708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_115782650_115783946_115784129_115784755_115784864_115785658
ENSMUSG00000030319.9_115782473_115785708_4	chr6	+	494	4	NNC	ENSMUSG00000030319.9	novel	5474	15	NA	NA	30974	3190	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	138202	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCGGCGGCGGCGCGCAAG	7886	False	NA	NA	False	AAAACA	-42	NA	115782472	115785708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_115782634_115783946_115784129_115784762_115784864_115785658
ENSMUSG00000030322.13_115819305_115830326_1	chr6	-	1961	8	FSM	ENSMUSG00000030322.13	ENSMUST00000032469.13	3614	8	6	1647	0	0	multi-exon	FALSE	canonical	0	0	junction_7	37.2010533096435	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAATTGTT	7887	False	NA	NA	False	NA	NA	NA	115830326	115819304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115825866_115826694_115827578_115827801_115830097
ENSMUSG00000030327.9_122851508_122865902_1	chr6	+	1121	9	NNC	ENSMUSG00000030327.9	novel	2476	8	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	183.742176704207	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTTTCATCTTTTAGT	863	False	NA	11	True	ATTAAA	-17	NA	122851507	122865902	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_122851623_122857371_122857473_122857616_122857722_122858459_122858542_122859226_122859336_122859772_122859957_122863710_122863814_122864298_122864364_122865645
ENSMUSG00000030330.16_125016811_125025965_1	chr6	+	1346	8	NIC	ENSMUSG00000030330.16	novel	1446	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	49.655548223615	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTTTATTGTAG	7119	False	NA	8	True	AATAAA	-15	NA	125016810	125025965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024280_125024444_125024551_125024755_125024904_125025138_125025201_125025330
ENSMUSG00000030330.16_125016811_125025965_2	chr6	+	1188	7	NIC	ENSMUSG00000030330.16	novel	1446	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_2	40.4533338826632	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTTTATTGTAG	7119	False	NA	8	True	AATAAA	-15	NA	125016810	125025965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_125016861_125020916_125020989_125024173_125024289_125024444_125024551_125024755_125024904_125025138_125025201_125025330
ENSMUSG00000030330.16_125016811_125025965_3	chr6	+	1246	8	NIC	ENSMUSG00000030330.16	novel	1446	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	45.7571227866688	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTTTATTGTAG	7119	False	NA	8	True	AATAAA	-15	NA	125016810	125025965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024551_125024864_125024904_125025138_125025201_125025330
ENSMUSG00000030330.16_125016811_125025965_4	chr6	+	1560	7	ISM	ENSMUSG00000108037.3	ENSMUST00000140883.7	3181	10	3	2497	3	-2497	5prime_fragment	FALSE	canonical	3	91	junction_4	20.4857674170793	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTTTATTGTAG	7119	False	NA	8	True	AATAAA	-15	NA	125016810	125025965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024904_125025138_125025201_125025330
ENSMUSG00000030330.16_125016811_125025965_5	chr6	+	1079	7	NIC	ENSMUSG00000030330.16	novel	1446	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_4	53.763112095769	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTTTATTGTAG	7119	False	NA	8	True	AATAAA	-15	NA	125016810	125025965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_125016861_125020916_125020989_125024173_125024289_125024444_125024551_125024864_125024904_125025138_125025201_125025330
ENSMUSG00000030330.16_125016811_125026228_1	chr6	+	1823	7	ISM	ENSMUSG00000108037.3	ENSMUST00000140883.7	3181	10	3	2234	3	-2234	5prime_fragment	FALSE	canonical	3	91	junction_4	20.4857674170793	424	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7119	False	NA	7	True	AATAAA	-17	NA	125016810	125026228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024904_125025138_125025201_125025330
ENSMUSG00000030330.16_125016811_125026228_2	chr6	+	1509	8	NIC	ENSMUSG00000030330.16	novel	1487	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	45.7571227866688	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7119	False	NA	7	True	AATAAA	-17	NA	125016810	125026228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024551_125024864_125024904_125025138_125025201_125025330
ENSMUSG00000030330.16_125016811_125026228_5	chr6	+	1609	8	NIC	ENSMUSG00000030330.16	novel	1487	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	49.655548223615	650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7119	False	NA	7	True	AATAAA	-17	NA	125016810	125026228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024280_125024444_125024551_125024755_125024904_125025138_125025201_125025330
ENSMUSG00000030330.16_125016811_125026228_6	chr6	+	1451	7	NIC	ENSMUSG00000030330.16	novel	1629	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_2	40.4533338826632	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7119	False	NA	7	True	AATAAA	-17	NA	125016810	125026228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_125016861_125020916_125020989_125024173_125024289_125024444_125024551_125024755_125024904_125025138_125025201_125025330
ENSMUSG00000030335.7_125168764_125170521_1	chr6	+	1080	3	FSM	ENSMUSG00000030335.7	ENSMUST00000032485.7	3427	3	-364	2711	0	0	multi-exon	FALSE	canonical	3	716	junction_1	10	5234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTCTGCCTCGTTCCTAAG	NA	False	NA	49	True	NA	NA	NA	125168763	125170521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_125169397_125169478_125169590_125170185
ENSMUSG00000030335.7_125169128_125170521_1	chr6	+	491	3	FSM	ENSMUSG00000030335.7	ENSMUST00000136804.2	855	3	364	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	333	659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTCTGCCTCGTTCCTAAG	NA	False	NA	49	True	NA	NA	NA	125169127	125170521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_125169172_125169478_125169590_125170185
ENSMUSG00000030335.7_125169180_125170521_1	chr6	+	477	3	NNC	ENSMUSG00000030335.7	novel	3427	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	368	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTCTGCCTCGTTCCTAAG	NA	False	NA	49	True	NA	NA	NA	125169179	125170521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_125169210_125169478_125169590_125170185
ENSMUSG00000030335.7_125169180_125170521_2	chr6	+	653	3	NNC	ENSMUSG00000030335.7	novel	3427	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	358	4164	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTCTGCCTCGTTCCTAAG	NA	False	NA	49	True	NA	NA	NA	125169179	125170521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_125169397_125169478_125169590_125170196
ENSMUSG00000030342.9_125437229_125471754_1	chr6	-	1222	8	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2062.12773016373	11244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	9966	False	NA	-10	True	AATAAA	-15	NA	125471754	125437228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439379_125440643_125440723_125441352_125441451_125449371_125449475_125471536
ENSMUSG00000030342.9_125437552_125471754_1	chr6	-	905	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	0	323	0	0	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTAGTATTCATTATGCA	9966	False	NA	NA	False	NA	NA	NA	125471754	125437551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
ENSMUSG00000030345.17_126852983_126862364_1	chr6	-	1074	5	ISM	ENSMUSG00000030345.17	ENSMUST00000078521.7	2252	15	36438	0	-17	0	3prime_fragment	FALSE	canonical	2	4	junction_4	3.57071421427143	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGTGGCTGTCAATCTATG	NA	False	NA	-12	True	AATAAA	-17	NA	126862364	126852982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_126853514_126854122_126854302_126857187_126857318_126860989_126861051_126862191
ENSMUSG00000030346.17_126900642_126916520_2	chr6	-	1574	9	FSM	ENSMUSG00000030346.17	ENSMUST00000112220.8	2233	9	30	629	-11	-264	multi-exon	FALSE	canonical	3	81	junction_4	57.8721651573535	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATGCTCATTGATACCAT	5295	False	NA	-18	True	AATAAA	-16	NA	126916520	126900641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904651_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
ENSMUSG00000030347.7_126916938_126920275_1	chr6	+	1053	2	FSM	ENSMUSG00000030347.7	ENSMUST00000201603.2	420	2	4	-637	0	637	multi-exon	FALSE	canonical	3	101	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTTCATTAGTACTCAT	NA	False	NA	NA	False	NA	NA	NA	126916937	126920275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_126916990_126919274
ENSMUSG00000030353.16_128205144_128277483_1	chr6	-	1616	11	FSM	ENSMUSG00000030353.16	ENSMUST00000112157.4	1909	11	293	0	218	0	multi-exon	TRUE	canonical	3	25	junction_7	24.4991836598692	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGAGGAGCTAGTTTGGC	1650	False	NA	-5	True	AATAAA	-19	NA	128277483	128205143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_128205443_128205530_128205684_128207554_128207696_128219363_128219538_128220332_128220473_128223283_128223340_128223780_128223825_128228502_128228566_128228884_128228950_128247830_128248086_128277257
ENSMUSG00000030357.11_128407066_128415640_1	chr6	-	2212	10	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1756.62783708579	6446	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9269	False	NA	-21	True	AATAAA	-16	NA	128415640	128407065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412815_128413532_128413678_128415368
ENSMUSG00000030357.11_128407628_128415640_1	chr6	-	1650	10	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	0	-562	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1756.62783708579	3397	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGTTTGGATGATGGCT	9269	False	NA	NA	False	NA	NA	NA	128415640	128407627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412815_128413532_128413678_128415368
ENSMUSG00000030357.11_128407628_128415640_2	chr6	-	1655	10	FSM	ENSMUSG00000030357.11	ENSMUST00000032508.11	2217	10	0	562	0	-562	multi-exon	FALSE	canonical	3	5250	junction_7	195.172162050601	3476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGTTTGGATGATGGCT	9269	False	NA	NA	False	NA	NA	NA	128415640	128407627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
ENSMUSG00000030359.15_128423326_128480244_1	chr6	-	729	4	Genic_Genomic	ENSMUSG00000030359.15	novel	4681	36	NA	NA	-8058	37204	multi-exon	FALSE	non_canonical	0	0	junction_1	0	117	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCCCGGCTTCAGCAAG	8752	False	NA	NA	False	NA	NA	NA	128480244	128423325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_128423399_128465853_128465987_128479128_128479327_128479919
ENSMUSG00000030359.15_128460530_128464872_1	chr6	-	625	7	ISM	ENSMUSG00000030359.15	ENSMUST00000112132.8	4681	36	38811	0	-54	0	3prime_fragment	FALSE	canonical	3	30	junction_1	17.1464281994822	200	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTTTTTTTTCCTTTTT	NA	False	NA	5	True	AATAAA	-20	NA	128464872	128460529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_128460690_128461826_128461869_128462520_128462624_128463080_128463150_128463855_128463947_128464365_128464497_128464843
ENSMUSG00000030359.15_128460530_128464872_2	chr6	-	835	7	NNC	ENSMUSG00000030359.15	novel	4681	36	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_6	23.8799078725191	229	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTTTTTTTTCCTTTTT	NA	False	NA	5	True	AATAAA	-20	NA	128464872	128460529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_128460690_128461826_128461869_128462520_128462624_128463080_128463150_128463855_128463947_128464365_128464497_128464633
ENSMUSG00000030386.20_12212232_12218191_1	chr7	+	862	5	NNC	ENSMUSG00000030386.20	novel	3509	4	NA	NA	0	363	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_4	49.6959505392542	56	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCCATCTCAGCTGTATC	NA	False	NA	NA	False	AATAAA	-27	NA	12212231	12218191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_12212634_12213590_12213674_12214361_12214419_12214861_12214954_12217963
ENSMUSG00000030402.6_19010730_19013080_1	chr7	-	883	5	NNC	ENSMUSG00000030402.6	novel	1648	5	NA	NA	446	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	10.779030568655	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTTTCTTCGTTGTTGT	NA	False	NA	1	True	AATAAA	-17	NA	19013080	19010729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19011135_19011874_19011936_19012009_19012116_19012194_19012313_19012887
ENSMUSG00000030403.10_18990854_19005536_1	chr7	-	2009	13	FSM	ENSMUSG00000030403.10	ENSMUST00000032561.9	2215	13	206	0	206	0	multi-exon	TRUE	canonical	3	1236	junction_9	117.461666323765	1696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005536	18990853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
ENSMUSG00000030413.8_18616223_18624366_1	chr7	+	574	3	NNC	ENSMUSG00000030413.8	novel	520	4	NA	NA	-2382	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	118	207	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTCCCTCCGGTGAATC	NA	False	NA	6	True	AATAAA	-15	NA	18616222	18624366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_18616397_18623202_18623325_18624088
ENSMUSG00000030417.16_35341437_35346905_1	chr7	-	604	5	NNC	ENSMUSG00000030417.16	novel	767	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	812.184092432251	9706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGGGTGTTTCAGAATCA	NA	False	NA	NA	False	AATAAA	-22	NA	35346905	35341436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_35341611_35342039_35342112_35343048_35343141_35343775_35343838_35346701
ENSMUSG00000030423.8_37962239_37970775_1	chr7	-	1216	7	NNC	ENSMUSG00000030423.8	novel	2113	7	NA	NA	-2	-819	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	96.8241533227462	3108	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTCAAATTCCTGTACT	NA	False	NA	-4	True	AATAAA	-20	NA	37970775	37962238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_37962734_37963751_37963854_37965323_37965386_37965550_37965623_37966792_37967020_37968325_37968379_37970570
ENSMUSG00000030423.8_37962239_37970775_2	chr7	-	1222	7	FSM	ENSMUSG00000030423.8	ENSMUST00000032585.8	2113	7	72	819	-2	-819	multi-exon	FALSE	canonical	3	243	junction_2	18.1567251085284	3165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTCAAATTCCTGTACT	NA	False	NA	-4	True	AATAAA	-20	NA	37970775	37962238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_37962734_37963751_37963854_37965323_37965386_37965550_37965629_37966792_37967020_37968325_37968379_37970570
ENSMUSG00000030432.13_4795989_4797561_1	chr7	+	923	4	NIC	ENSMUSG00000030432.13	novel	1106	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	3938	junction_1	1235.63128265137	16960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTGCTCATTGAGCT	2809	False	NA	17	True	AATAAA	-32	NA	4795988	4797561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_4795998_4796319_4796409_4796501_4797182_4797416
ENSMUSG00000030443.17_6328356_6334278_1	chr7	-	424	3	ISM	ENSMUSG00000030443.17	ENSMUST00000135435.2	577	5	-75	2161	-1	-1707	5prime_fragment	FALSE	canonical	3	27	junction_2	0.5	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCAACTCTATCCCTTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	6334278	6328355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_6328579_6332253_6332316_6334139
ENSMUSG00000030447.16_55574863_55580446_1	chr7	+	1180	4	ISM	ENSMUSG00000030447.16	ENSMUST00000173267.8	5111	15	28041	-200	-3769	200	3prime_fragment	FALSE	canonical	3	563	junction_3	60.301096360035	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGCGTTTGTTCATTGG	NA	False	NA	11	True	AATAAA	-14	NA	55574862	55580446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_55574955_55576035_55576275_55577934_55578083_55579745
ENSMUSG00000030452.17_55581035_55612198_1	chr7	-	2975	7	NIC	ENSMUSG00000030452.17	novel	3925	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_6	69.789564644962	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612198	55581034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55612143
ENSMUSG00000030452.17_55582315_55612198_1	chr7	-	1574	6	NIC	ENSMUSG00000030452.17	novel	3925	7	NA	NA	0	683	combination_of_known_splicesites	FALSE	canonical	3	11	junction_5	84.7924524943111	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCATCAATACCTCATCAT	NA	False	NA	NA	False	ATTAAA	-21	NA	55612198	55582314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55612143
ENSMUSG00000030452.17_55582315_55612198_2	chr7	-	1891	7	FSM	ENSMUSG00000030452.17	ENSMUST00000032635.14	3197	7	26	1280	0	683	multi-exon	FALSE	canonical	3	165	junction_5	25.3837218179946	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCATCAATACCTCATCAT	NA	False	NA	NA	False	ATTAAA	-21	NA	55612198	55582314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55611947
ENSMUSG00000030452.17_55582315_55612198_3	chr7	-	1695	7	NIC	ENSMUSG00000030452.17	novel	3925	7	NA	NA	0	683	combination_of_known_junctions	FALSE	canonical	3	33	junction_6	69.789564644962	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCATCAATACCTCATCAT	NA	False	NA	NA	False	ATTAAA	-21	NA	55612198	55582314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55612143
ENSMUSG00000030452.17_55582998_55612198_1	chr7	-	1208	7	FSM	ENSMUSG00000030452.17	ENSMUST00000032635.14	3197	7	26	1963	0	0	multi-exon	FALSE	canonical	3	165	junction_5	25.3837218179946	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAATATATTATGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	55612198	55582997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55611947
ENSMUSG00000030471.18_48438780_48477188_1	chr7	+	2375	17	NNC	ENSMUSG00000030471.18	novel	2410	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	73.427446120303	263	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTAGTTTCTAATGCTTC	NA	False	NA	9	True	AATAAA	-20	NA	48438779	48477188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_48438886_48445648_48445795_48449576_48449700_48451054_48451133_48452663_48452809_48454097_48454163_48454937_48455101_48455316_48455443_48458540_48458675_48461072_48461174_48465205_48465325_48466167_48466231_48466893_48466988_48468384_48468469_48472317_48472476_48474381_48474480_48476616
ENSMUSG00000030471.18_48438780_48477188_2	chr7	+	2376	17	NIC	ENSMUSG00000030471.18	novel	2410	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	63.8620339090449	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTAGTTTCTAATGCTTC	NA	False	NA	9	True	AATAAA	-20	NA	48438779	48477188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_48438886_48445653_48445795_48449576_48449700_48451054_48451133_48452663_48452809_48454097_48454163_48454937_48455101_48455316_48455443_48458540_48458675_48461072_48461174_48465199_48465325_48466167_48466231_48466893_48466988_48468384_48468469_48472317_48472476_48474381_48474480_48476616
ENSMUSG00000030491.17_35193066_35237118_2	chr7	-	1624	12	NNC	ENSMUSG00000030491.17	novel	1620	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	137.361139499598	1398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAAGGCTACATTGCAGA	NA	False	NA	-42	True	AATAAA	-4	NA	35237118	35193065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_35193363_35193610_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
ENSMUSG00000030491.17_35196767_35237118_1	chr7	-	1985	11	Fusion	ENSMUSG00000100068.2_ENSMUSG00000030491.17	novel	769	6	NA	NA	0	113	multi-exon	FALSE	canonical	3	19	junction_1	140.882362274346	286	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTTTGGTTAGTATTT	NA	False	NA	NA	False	NA	NA	NA	35237118	35196766	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr7_-_35197571_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
ENSMUSG00000030493.14_35091730_35096261_1	chr7	-	1350	5	FSM	ENSMUSG00000030493.14	ENSMUST00000154597.2	831	5	-128	-391	0	0	multi-exon	FALSE	canonical	3	12	junction_4	59.3316947339278	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAGAAAAATTA	NA	False	NA	NA	False	AATAAA	-4	NA	35096261	35091729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_35092517_35094399_35094553_35094661_35094802_35095637_35095757_35096110
ENSMUSG00000030493.14_35091730_35096261_2	chr7	-	1704	4	FSM	ENSMUSG00000030493.14	ENSMUST00000032704.12	1857	4	0	153	0	0	multi-exon	FALSE	canonical	3	143	junction_2	4.92160768674447	753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAGAAAAATTA	NA	False	NA	NA	False	AATAAA	-4	NA	35096261	35091729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_35092517_35094399_35094553_35094661_35094802_35095637
ENSMUSG00000030494.14_35033755_35091714_1	chr7	+	3348	15	FSM	ENSMUSG00000030494.14	ENSMUST00000032705.13	3508	15	160	0	0	0	multi-exon	FALSE	canonical	3	83	junction_1	11.3992928531124	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTCTTTTGCTTT	NA	False	NA	26	True	AATAAA	-26	NA	35033754	35091714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_35033837_35053156_35053273_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179
ENSMUSG00000030505.18_49428185_49508013_1	chr7	+	2416	16	FSM	ENSMUSG00000030505.18	ENSMUST00000032715.13	2507	16	91	0	0	0	multi-exon	FALSE	canonical	3	379	junction_1	68.5528506579656	256	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGAATGTTTTCATGAA	NA	False	NA	44	True	AATAAA	-28	NA	49428184	49508013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_49428250_49428328_49428462_49430056_49430140_49430868_49430919_49431689_49431793_49435814_49435975_49436980_49437123_49441720_49441787_49448053_49448176_49456274_49456375_49467779_49467859_49476455_49476644_49478691_49478779_49498242_49498294_49498484_49498573_49507114
ENSMUSG00000030512.14_65710292_65724328_1	chr7	+	1035	9	FSM	ENSMUSG00000030512.14	ENSMUST00000153609.8	1248	9	206	7	0	0	multi-exon	FALSE	canonical	3	2395	junction_6	274.913622798144	20100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGTGTGCTGTGT	NA	False	NA	16	True	AATAAA	-16	NA	65710291	65724328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65719275_65719866_65719947_65720337_65720414_65720979_65721074_65724069
ENSMUSG00000030523.19_63835129_63849115_1	chr7	+	614	4	ISM	ENSMUSG00000030523.19	ENSMUST00000205690.2	441	5	-220	2575	0	84	5prime_fragment	FALSE	canonical	3	52	junction_1	397.676864915334	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATGGGGTGCTGTACAAA	NA	False	NA	13	True	AATAAA	-16	NA	63835128	63849115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_63835372_63836134_63836221_63847024_63847105_63848910
ENSMUSG00000030523.19_63835129_63861175_1	chr7	+	2078	11	NIC	ENSMUSG00000030523.19	novel	1992	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_1	301.433309373732	1240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGACTGAGTTTTCAGAC	NA	False	NA	26	True	ATTAAA	-23	NA	63835128	63861175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_63835372_63836134_63836221_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
ENSMUSG00000030523.19_63835298_63849751_1	chr7	+	604	4	NNC	ENSMUSG00000030523.19	novel	2765	14	NA	NA	0	720	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	415.847995733484	118	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTCTTTTTAAAGAATTA	NA	False	NA	NA	False	NA	NA	NA	63835297	63849751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_63835372_63847024_63847105_63848910_63849107_63849497
ENSMUSG00000030523.19_63835298_63861175_1	chr7	+	1651	9	NIC	ENSMUSG00000030523.19	novel	1992	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	271.883678022422	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGACTGAGTTTTCAGAC	NA	False	NA	26	True	ATTAAA	-23	NA	63835297	63861175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63858023_63858199_63858616_63858741_63859704_63859778_63860585
ENSMUSG00000030523.19_63835298_63861175_2	chr7	+	1823	10	FSM	ENSMUSG00000030523.19	ENSMUST00000205960.2	1992	10	169	0	0	0	multi-exon	FALSE	canonical	3	724	junction_5	65.6911967719673	1429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGACTGAGTTTTCAGAC	NA	False	NA	26	True	ATTAAA	-23	NA	63835297	63861175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
ENSMUSG00000030523.19_63835298_63861175_3	chr7	+	1909	11	NIC	ENSMUSG00000030523.19	novel	1992	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_1	301.433309373732	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGACTGAGTTTTCAGAC	NA	False	NA	26	True	ATTAAA	-23	NA	63835297	63861175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_63835372_63836134_63836221_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
ENSMUSG00000030523.19_63835298_63867865_1	chr7	+	1962	11	FSM	ENSMUSG00000030523.19	ENSMUST00000205731.2	2575	11	-5	618	0	-618	multi-exon	FALSE	canonical	3	82	junction_10	225.867682504603	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCAGAGTGGTACCTTGG	NA	False	NA	NA	False	AGTAAA	-14	NA	63835297	63867865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585_63860687_63867237
ENSMUSG00000030528.13_80104840_80152085_1	chr7	-	2567	16	ISM	ENSMUSG00000030528.13	ENSMUST00000170315.3	4770	22	32661	0	12355	0	3prime_fragment	FALSE	canonical	3	335	junction_6	43.2257125126032	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTAGTGGCCATTGTTT	NA	False	NA	-33	True	AATAAA	-22	NA	80152085	80104839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_80105185_80108560_80108745_80110477_80110601_80113520_80113714_80114485_80114686_80116522_80116662_80119337_80119529_80123776_80123973_80130082_80130244_80131151_80131259_80143849_80143999_80144180_80144280_80145737_80145852_80147152_80147272_80149500_80149693_80152030
ENSMUSG00000030532.7_79992892_79995850_1	chr7	+	1005	4	NNC	ENSMUSG00000030532.7	novel	1510	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	46.7784375778224	675	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTTCTTCCTTCTCTG	NA	False	NA	17	True	AATAAA	-22	NA	79992891	79995850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_79992998_79993286_79993343_79993463_79993705_79995248
ENSMUSG00000030532.7_79992892_79995850_2	chr7	+	783	4	NNC	ENSMUSG00000030532.7	novel	1510	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	53.8041716680862	80	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTTCTTCCTTCTCTG	NA	False	NA	17	True	AATAAA	-22	NA	79992891	79995850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_79992998_79993286_79993343_79993538_79993705_79995395
ENSMUSG00000030532.7_79992892_79995850_3	chr7	+	858	4	FSM	ENSMUSG00000030532.7	ENSMUST00000032747.7	1510	4	40	612	0	0	multi-exon	FALSE	canonical	3	96	junction_1	13.490737563232	740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTTCTTCCTTCTCTG	NA	False	NA	17	True	AATAAA	-22	NA	79992891	79995850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_79992998_79993286_79993343_79993463_79993705_79995395
ENSMUSG00000030532.7_79992892_79995850_4	chr7	+	1064	4	NIC	ENSMUSG00000030532.7	novel	772	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	53.8537113133554	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTTCTTCCTTCTCTG	NA	False	NA	17	True	AATAAA	-22	NA	79992891	79995850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_79993204_79993286_79993343_79993463_79993705_79995395
ENSMUSG00000030538.16_79876907_79882372_2	chr7	-	839	7	NNC	ENSMUSG00000030538.16	novel	1047	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	293.466305088373	2973	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2240	False	NA	-12	True	AATAAA	-15	NA	79882372	79876906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882091_79882127_79882264
ENSMUSG00000030538.16_79876907_79882372_3	chr7	-	836	7	NNC	ENSMUSG00000030538.16	novel	1047	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	292.532286916998	1453	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2240	False	NA	-12	True	AATAAA	-15	NA	79882372	79876906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_79877125_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882091_79882127_79882257
ENSMUSG00000030538.16_79876907_79882372_4	chr7	-	829	6	NNC	ENSMUSG00000030538.16	novel	702	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	319.027898466576	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2240	False	NA	-12	True	AATAAA	-15	NA	79882372	79876906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880191_79882257
ENSMUSG00000030538.16_79876907_79882372_5	chr7	-	851	7	NNC	ENSMUSG00000030538.16	novel	1047	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	283.716652470187	3255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2240	False	NA	-12	True	AATAAA	-15	NA	79882372	79876906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880058_79880173_79882091_79882127_79882257
ENSMUSG00000030538.16_79876907_79882372_6	chr7	-	841	7	NNC	ENSMUSG00000030538.16	novel	1047	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	296.27052202712	3140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2240	False	NA	-12	True	AATAAA	-15	NA	79882372	79876906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880164_79882087_79882127_79882257
ENSMUSG00000030538.16_79876907_79882372_7	chr7	-	826	6	NNC	ENSMUSG00000030538.16	novel	627	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	319.027898466576	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2240	False	NA	-12	True	AATAAA	-15	NA	79882372	79876906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882242
ENSMUSG00000030538.16_79876907_79882479_1	chr7	-	809	5	FSM	ENSMUSG00000030538.16	ENSMUST00000071457.12	702	5	-107	0	0	0	multi-exon	FALSE	canonical	3	77	junction_4	297.709904941035	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2133	False	NA	-12	True	AATAAA	-15	NA	79882479	79876906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79882257
ENSMUSG00000030538.16_79876907_79882479_2	chr7	-	948	7	NNC	ENSMUSG00000030538.16	novel	1047	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	296.27052202712	3590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2133	False	NA	-12	True	AATAAA	-15	NA	79882479	79876906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880164_79882087_79882127_79882257
ENSMUSG00000030538.16_79877128_79882372_1	chr7	-	625	7	FSM	ENSMUSG00000030538.16	ENSMUST00000065163.15	1047	7	189	233	0	0	multi-exon	FALSE	canonical	3	721	junction_2	48.5546656414763	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATTGTCCTGTGATGTCT	2240	False	NA	NA	False	NA	NA	NA	79882372	79877127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882091_79882127_79882257
ENSMUSG00000030538.16_79877580_79882372_1	chr7	-	780	6	ISM	ENSMUSG00000030538.16	ENSMUST00000065163.15	1047	7	189	685	0	0	5prime_fragment	FALSE	canonical	3	721	junction_1	52.8446780669539	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGACTTTTGAACTTCT	2240	False	NA	NA	False	NA	NA	NA	79882372	79877579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882091_79882127_79882257
ENSMUSG00000030541.17_79744598_79748157_1	chr7	-	1084	6	ISM	ENSMUSG00000030541.17	ENSMUST00000134328.8	1790	11	16923	0	0	0	3prime_fragment	FALSE	canonical	3	1495	junction_5	179.145080870227	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGTCTTGATGTGTTT	NA	False	NA	-9	True	AAAAAG	-9	NA	79748157	79744597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883
ENSMUSG00000030541.17_79744598_79765080_1	chr7	-	1673	11	NNC	ENSMUSG00000030541.17	novel	1790	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	580.916250418251	3718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGTCTTGATGTGTTT	NA	False	NA	-9	True	AAAAAG	-9	NA	79765080	79744597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_79744952_79745368_79745462_79745546_79745631_79745764_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
ENSMUSG00000030541.17_79744598_79765080_2	chr7	-	1677	11	NNC	ENSMUSG00000030541.17	novel	1790	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	579.335619481488	3822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGTCTTGATGTGTTT	NA	False	NA	-9	True	AAAAAG	-9	NA	79765080	79744597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752954_79764905
ENSMUSG00000030541.17_79744598_79765080_3	chr7	-	1544	10	NIC	ENSMUSG00000030541.17	novel	1790	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_5	604.630241052382	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGTCTTGATGTGTTT	NA	False	NA	-9	True	AAAAAG	-9	NA	79765080	79744597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
ENSMUSG00000030541.17_79744598_79765080_4	chr7	-	1676	11	NNC	ENSMUSG00000030541.17	novel	1790	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	577.87251189168	3814	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGTCTTGATGTGTTT	NA	False	NA	-9	True	AAAAAG	-9	NA	79765080	79744597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752874_79752962_79764909
ENSMUSG00000030543.11_79461000_79463187_1	chr7	+	1419	2	FSM	ENSMUSG00000030543.11	ENSMUST00000107394.3	1944	2	525	0	525	0	multi-exon	FALSE	canonical	3	17	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGCTTCTGATTTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	79460999	79463187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_79461508_79462276
ENSMUSG00000030545.10_79386998_79392828_1	chr7	-	948	3	FSM	ENSMUSG00000030545.10	ENSMUST00000032761.8	2241	3	0	1293	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCATGTGAGCACCTTACC	NA	False	NA	NA	False	TTTAAA	-12	NA	79392828	79386997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_79387659_79389912_79390029_79392657
ENSMUSG00000030556.14_67164622_67294979_1	chr7	-	1188	9	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	0	-468	combination_of_known_splicesites	FALSE	canonical	2	10	junction_2	25.6124969497314	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGTGTTGTCTTCTGTGT	572	False	NA	NA	False	AATACA	-17	NA	67294979	67164621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_67164927_67179333_67179494_67195113_67195217_67209605_67209718_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
ENSMUSG00000030556.14_67164622_67294979_2	chr7	-	1364	10	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	0	-468	combination_of_known_junctions	FALSE	canonical	3	41	junction_5	13.5026289164118	199	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGTGTTGTCTTCTGTGT	572	False	NA	NA	False	AATACA	-17	NA	67294979	67164621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209718_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
ENSMUSG00000030556.14_67164622_67294979_3	chr7	-	1252	9	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	0	-468	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	20.648471493067	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGTGTTGTCTTCTGTGT	572	False	NA	NA	False	AATACA	-17	NA	67294979	67164621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
ENSMUSG00000030559.9_88079481_88140667_1	chr7	+	1464	3	FSM	ENSMUSG00000030559.9	ENSMUST00000107256.4	1577	3	0	113	0	-113	multi-exon	FALSE	canonical	3	30	junction_1	4.5	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGTTTCTGATATTACC	NA	False	NA	5	True	AATAAA	-18	NA	88079480	88140667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_88079812_88099688_88099970_88139815
ENSMUSG00000030587.6_28937778_28946954_1	chr7	-	1103	8	NNC	ENSMUSG00000030587.6	novel	1466	4	NA	NA	809	8208	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4370	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAATGGGCCCGCCCGGT	2720	False	NA	NA	False	NA	NA	NA	28946954	28937777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_28937871_28943502_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ENSMUSG00000030587.6_28937778_28946954_2	chr7	-	946	7	NIC	ENSMUSG00000030587.6	novel	1466	4	NA	NA	809	8208	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	325	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAATGGGCCCGCCCGGT	2720	False	NA	NA	False	NA	NA	NA	28946954	28937777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_28937862_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945325_28945420_28946661
ENSMUSG00000030587.6_28937778_28946954_3	chr7	-	1106	8	NNC	ENSMUSG00000030587.6	novel	1466	4	NA	NA	809	8208	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3907	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAATGGGCCCGCCCGGT	2720	False	NA	NA	False	NA	NA	NA	28946954	28937777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_28937871_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945242_28945325_28945420_28946661
ENSMUSG00000030587.6_28937778_28946954_4	chr7	-	1097	8	NNC	ENSMUSG00000030587.6	novel	1466	4	NA	NA	809	8208	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4500	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAATGGGCCCGCCCGGT	2720	False	NA	NA	False	NA	NA	NA	28946954	28937777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_28937862_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945242_28945325_28945420_28946661
ENSMUSG00000030587.6_28937898_28946954_1	chr7	-	1139	8	NIC	ENSMUSG00000030587.6	novel	1466	4	NA	NA	809	8088	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1027	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGATCTCCTCAGCCAGC	2720	False	NA	NA	False	NA	NA	NA	28946954	28937897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_28938019_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ENSMUSG00000030587.6_28937898_28946954_2	chr7	-	1157	8	NIC	ENSMUSG00000030587.6	novel	1466	4	NA	NA	809	8088	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1048	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGATCTCCTCAGCCAGC	2720	False	NA	NA	False	NA	NA	NA	28946954	28937897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_28938037_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ENSMUSG00000030588.13_28937778_28946954_1	chr7	+	955	7	NIC	ENSMUSG00000030588.13	novel	1111	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_5	620.032638029824	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6061	False	NA	12	True	AATAAA	-15	NA	28937777	28946954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_28937871_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945325_28945420_28946661
ENSMUSG00000030588.13_28937898_28946954_1	chr7	+	1109	8	NIC	ENSMUSG00000030588.13	novel	816	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_1	515.665569523346	1097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6181	False	NA	12	True	AATAAA	-15	NA	28937897	28946954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_28937989_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ENSMUSG00000030589.16_28837060_28851046_1	chr7	+	2042	16	ISM	ENSMUSG00000030589.16	ENSMUST00000094617.11	4617	17	2702	2318	2562	0	3prime_fragment	TRUE	non_canonical	0	0	junction_2	17.9245331567907	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACTGCCAGTCACACTCC	415	False	NA	20	True	AAAAAG	-19	NA	28837059	28851046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_28837151_28838235_28838346_28838468_28838531_28839666_28839799_28839912_28840067_28842390_28842565_28844556_28844674_28845232_28845509_28847791_28847873_28847968_28848074_28848198_28848318_28848411_28848572_28849223_28849261_28849346_28849482_28849603_28849717_28850870
ENSMUSG00000030590.16_28851937_28855608_1	chr7	-	1315	7	NIC	ENSMUSG00000030590.16	novel	2169	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	257	junction_3	24.5877114745467	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-19	NA	28855608	28851936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28854783_28855099_28855456_28855554
ENSMUSG00000030591.18_28873613_28874026_1	chr7	-	393	2	NNC	ENSMUSG00000030591.18	novel	1983	6	NA	NA	1258	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2035	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTATCCAGTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	28874026	28873612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_28873787_28873807
ENSMUSG00000030591.18_28873613_28879906_1	chr7	-	1299	8	NNC	ENSMUSG00000030591.18	novel	1391	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	623.512630184826	4057	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTATCCAGTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	28879906	28873612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_28873787_28873807_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
ENSMUSG00000030591.18_28873613_28879940_1	chr7	-	1123	6	NNC	ENSMUSG00000030591.18	novel	1391	7	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	909.551230003016	2384	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTATCCAGTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	28879940	28873612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_28873787_28873807_28874173_28874835_28874948_28875497_28875599_28876490_28876623_28879701
ENSMUSG00000030591.18_28873613_28879940_2	chr7	-	1151	5	NNC	ENSMUSG00000030591.18	novel	1391	7	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	807.111013120252	1349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTATCCAGTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	28879940	28873612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876623_28879694
ENSMUSG00000030591.18_28873613_28879940_3	chr7	-	1333	8	NNC	ENSMUSG00000030591.18	novel	1391	7	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	623.512630184826	5772	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTATCCAGTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	28879940	28873612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_28873787_28873807_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
ENSMUSG00000030591.18_28873613_28879940_4	chr7	-	1178	5	NIC	ENSMUSG00000030591.18	novel	1391	7	NA	NA	-34	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_4	804.111932506912	1301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTATCCAGTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	28879940	28873612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28879701
ENSMUSG00000030591.18_28873954_28879906_2	chr7	-	972	7	NNC	ENSMUSG00000030591.18	novel	1391	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	668.238896071025	188	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCCGAGTCTCCCCAGT	NA	False	NA	-12	True	AATAAA	-18	NA	28879906	28873953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876650_28878343_28878447_28878567_28878641_28879701
ENSMUSG00000030591.18_28873954_28879940_1	chr7	-	1018	7	NNC	ENSMUSG00000030591.18	novel	1391	7	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	668.238896071025	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCCGAGTCTCCCCAGT	NA	False	NA	-12	True	AATAAA	-18	NA	28879940	28873953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878338_28878447_28878567_28878641_28879701
ENSMUSG00000030591.18_28873954_28879940_2	chr7	-	1011	7	NNC	ENSMUSG00000030591.18	novel	1391	7	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	668.238896071025	944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCCGAGTCTCCCCAGT	NA	False	NA	-12	True	AATAAA	-18	NA	28879940	28873953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876650_28878338_28878447_28878567_28878641_28879701
ENSMUSG00000030595.16_28458457_28466065_1	chr7	-	1369	6	FSM	ENSMUSG00000030595.16	ENSMUST00000085851.12	1243	6	-126	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	23.6761483354029	3850	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCTTCCTGCTTATTT	NA	False	NA	1	True	AATAAA	-33	NA	28466065	28458456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28458630_28459251_28459522_28459601_28459691_28461026_28461361_28461450_28461557_28465668
ENSMUSG00000030598.16_28432475_28437569_1	chr7	+	1411	5	ISM	ENSMUSG00000030598.16	ENSMUST00000108278.9	1806	8	16218	-6	550	0	3prime_fragment	FALSE	canonical	3	49	junction_4	39.6169155790806	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	28432474	28437569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_28432966_28434701_28434798_28435492_28435629_28436763_28436972_28437089
ENSMUSG00000030598.16_28434549_28437569_1	chr7	+	865	3	ISM	ENSMUSG00000030598.16	ENSMUST00000108279.9	1563	7	18251	0	2624	0	3prime_fragment	FALSE	canonical	3	40	junction_2	52	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	28434548	28437569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_28434798_28435492_28435629_28437089
ENSMUSG00000030603.17_27741132_27742384_1	chr7	-	661	5	NNC	ENSMUSG00000030603.17	novel	1440	11	NA	NA	4063	0	at_least_one_novel_splicesite	FALSE	canonical	2	27	junction_3	1013.81889408316	8505	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTCTTAGGTGTTTAAC	NA	False	NA	-4	True	AATAAA	-24	NA	27742384	27741131	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_27741346_27741525_27741582_27741763_27741933_27742080_27742152_27742233
ENSMUSG00000030603.17_27741132_27742384_2	chr7	-	660	5	NNC	ENSMUSG00000030603.17	novel	1440	11	NA	NA	4063	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	1024.07919005319	7309	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTCTTAGGTGTTTAAC	NA	False	NA	-4	True	AATAAA	-24	NA	27742384	27741131	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742145_27742233
ENSMUSG00000030603.17_27741132_27749473_1	chr7	-	1382	11	NNC	ENSMUSG00000030603.17	novel	1440	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_7	700.645017109235	19783	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTCTTAGGTGTTTAAC	NA	False	NA	-4	True	AATAAA	-24	NA	27749473	27741131	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746703_27746790_27746938_27748217_27748405_27748528_27748628_27749407
ENSMUSG00000030603.17_27741132_27749473_2	chr7	-	1529	10	NIC	ENSMUSG00000030603.17	novel	1440	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	2113	junction_4	111.139329750021	5110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTCTTAGGTGTTTAAC	NA	False	NA	-4	True	AATAAA	-24	NA	27749473	27741131	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_27741346_27741525_27741582_27741763_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
ENSMUSG00000030604.10_27504261_27517387_1	chr7	+	463	5	NNC	ENSMUSG00000030604.10	novel	5329	4	NA	NA	-2360	-707	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	14.543039572249	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGCTCCAGGTTTAGTGAT	4937	False	NA	NA	False	AGTAAA	-14	NA	27504260	27517387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_27504337_27506608_27506662_27507625_27507753_27510175_27510275_27517279
ENSMUSG00000030605.16_78783516_78798779_1	chr7	-	1981	9	NNC	ENSMUSG00000030605.16	novel	2008	9	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	403.415341180774	2175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTGCCTCCTCATTG	NA	False	NA	-5	True	AATACA	-19	NA	78798779	78783515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_78784286_78784395_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78794994_78795127_78795369_78795493_78798642
ENSMUSG00000030606.9_78766768_78780744_1	chr7	-	1418	5	FSM	ENSMUSG00000030606.9	ENSMUST00000206092.2	3358	5	22	1918	-1	0	multi-exon	FALSE	canonical	2	5	junction_4	1.87082869338697	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTAATTCTCCTGGCAT	2297	False	NA	NA	False	NA	NA	NA	78780744	78766767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_78767242_78767596_78767900_78771394_78771764_78773117_78773300_78780654
ENSMUSG00000030611.11_78433104_78442737_1	chr7	+	819	6	FSM	ENSMUSG00000030611.11	ENSMUST00000032840.5	1056	6	237	0	0	0	multi-exon	FALSE	canonical	3	364	junction_2	39.2153031353833	2782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGTGAGTTTTTGTTC	NA	False	NA	3	True	AATAAA	-16	NA	78433103	78442737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_78433172_78433320_78433429_78438422_78438522_78440384_78440515_78441621_78441688_78442389
ENSMUSG00000030611.11_78433104_78442737_2	chr7	+	812	6	NNC	ENSMUSG00000030611.11	novel	1056	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	162.954472169376	2531	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGTGAGTTTTTGTTC	NA	False	NA	3	True	AATAAA	-16	NA	78433103	78442737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_78433172_78433320_78433429_78438422_78438522_78440391_78440515_78441621_78441688_78442389
ENSMUSG00000030612.7_78425089_78432837_1	chr7	-	1029	4	FSM	ENSMUSG00000030612.7	ENSMUST00000032841.7	1134	4	0	105	0	-105	multi-exon	FALSE	canonical	3	446	junction_2	24.7296493213219	5139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGATTTGTCCTTGGTGG	NA	False	NA	-5	True	ATTAAA	-22	NA	78432837	78425088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_78425474_78430185_78430360_78431147_78431335_78432554
ENSMUSG00000030613.14_92210703_92231287_1	chr7	+	1035	9	FSM	ENSMUSG00000030613.14	ENSMUST00000032842.13	1596	9	346	215	346	-215	multi-exon	FALSE	canonical	3	146	junction_4	17.8658193207029	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTGTAAATGAAGTTGGA	NA	False	NA	NA	False	AATAAA	-16	NA	92210702	92231287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_92210844_92216829_92216950_92217679_92217784_92221746_92221849_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231002
ENSMUSG00000030613.14_92210703_92231502_1	chr7	+	1250	9	FSM	ENSMUSG00000030613.14	ENSMUST00000032842.13	1596	9	346	0	346	0	multi-exon	FALSE	canonical	3	146	junction_4	17.8658193207029	1659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTGTAAATGTGTTAT	NA	False	NA	10	True	AATAAA	-18	NA	92210702	92231502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_92210844_92216829_92216950_92217679_92217784_92221746_92221849_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231002
ENSMUSG00000030614.9_90113243_90125205_1	chr7	-	716	6	NNC	ENSMUSG00000030614.9	novel	2259	5	NA	NA	-2	3403	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	127.099016518618	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTTGGTCATAGTCTCT	6024	False	NA	NA	False	NA	NA	NA	90125205	90113242	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_90113377_90117949_90118001_90118777_90118890_90119972_90120167_90121805_90121928_90125102
ENSMUSG00000030614.9_90118031_90125203_1	chr7	-	868	5	FSM	ENSMUSG00000030614.9	ENSMUST00000032843.9	2259	5	6	1385	0	1100	multi-exon	FALSE	canonical	3	210	junction_1	24.1389208540896	1321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTCTTTCTTTCTTCA	6026	False	NA	NA	False	TATAAA	-17	NA	90125203	90118030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_90118370_90118777_90118890_90119972_90120167_90121805_90121928_90125102
ENSMUSG00000030614.9_90118031_90125203_2	chr7	-	862	5	NNC	ENSMUSG00000030614.9	novel	2259	5	NA	NA	0	1100	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	106.563068180303	1280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTCTTTCTTTCTTCA	6026	False	NA	NA	False	TATAAA	-17	NA	90125203	90118030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_90118370_90118777_90118880_90119968_90120167_90121805_90121928_90125102
ENSMUSG00000030614.9_90118216_90125203_1	chr7	-	683	5	FSM	ENSMUSG00000030614.9	ENSMUST00000032843.9	2259	5	6	1570	0	915	multi-exon	FALSE	canonical	3	210	junction_1	24.1389208540896	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACGTGCAAGGCTTGTGCC	6026	False	NA	NA	False	AATATA	-10	NA	90125203	90118215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_90118370_90118777_90118890_90119972_90120167_90121805_90121928_90125102
ENSMUSG00000030619.11_89603868_89629441_1	chr7	-	1656	12	NNC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	228	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_11	690.504355136743	3600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTAACTCTAGAAAGCT	NA	False	NA	-8	True	AATAAA	-27	NA	89629441	89603867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_89604272_89604738_89604813_89605462_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629274
ENSMUSG00000030619.11_89603868_89629498_1	chr7	-	1713	12	NNC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	171	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_11	690.504355136743	3774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTAACTCTAGAAAGCT	NA	False	NA	-8	True	AATAAA	-27	NA	89629498	89603867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_89604272_89604738_89604813_89605462_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629274
ENSMUSG00000030619.11_89603868_89629767_1	chr7	-	1548	12	NIC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	461	junction_2	565.94251087883	4543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTAACTCTAGAAAGCT	NA	False	NA	-8	True	AATAAA	-27	NA	89629767	89603867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_89604272_89604738_89604813_89605551_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
ENSMUSG00000030619.11_89603868_89629767_2	chr7	-	1484	11	NIC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_10	722.358671298407	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTAACTCTAGAAAGCT	NA	False	NA	-8	True	AATAAA	-27	NA	89629767	89603867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_89604272_89604738_89604813_89605462_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89629619
ENSMUSG00000030619.11_89603868_89629820_1	chr7	-	1690	12	FSM	ENSMUSG00000030619.11	ENSMUST00000238792.2	1503	12	90	-277	-53	0	multi-exon	FALSE	canonical	3	1777	junction_2	230.503903625897	6562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTAACTCTAGAAAGCT	NA	False	NA	-8	True	AATAAA	-27	NA	89629820	89603867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_89604272_89604738_89604813_89605462_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
ENSMUSG00000030619.11_89603868_89629820_2	chr7	-	1601	12	NIC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	-53	0	combination_of_known_junctions	FALSE	canonical	3	461	junction_2	565.94251087883	4944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTAACTCTAGAAAGCT	NA	False	NA	-8	True	AATAAA	-27	NA	89629820	89603867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_89604272_89604738_89604813_89605551_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
ENSMUSG00000030619.11_89613802_89629767_1	chr7	-	1029	8	ISM	ENSMUSG00000030619.11	ENSMUST00000238792.2	1503	12	143	9657	0	0	5prime_fragment	FALSE	canonical	3	2155	junction_7	201.039340245959	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATGTTTTCAATCTTT	NA	False	NA	NA	False	AATAAA	-16	NA	89629767	89613801	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
ENSMUSG00000030629.16_84264262_84339091_1	chr7	-	1754	8	FSM	ENSMUSG00000030629.16	ENSMUST00000209165.2	967	8	0	-787	0	0	multi-exon	FALSE	canonical	3	64	junction_6	270.713795702534	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCTACGTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	84339091	84264261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84302089_84302251_84338953
ENSMUSG00000030638.14_81862718_81956627_1	chr7	+	1468	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	37736	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	128.793196637089	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	34	False	NA	17	True	AATAAA	-24	NA	81862717	81956627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_81862770_81909339_81909409_81917487_81917561_81919987_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
ENSMUSG00000030638.14_81862718_81956627_2	chr7	+	1475	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	37736	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	107.755437797821	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	34	False	NA	17	True	AATAAA	-24	NA	81862717	81956627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_81862770_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
ENSMUSG00000030638.14_81887520_81956627_1	chr7	+	1546	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	-32574	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	114.317266849763	344	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	NA	False	NA	17	True	AATAAA	-24	NA	81887519	81956627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_81887643_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
ENSMUSG00000030641.11_92506733_92523445_1	chr7	-	3464	7	FSM	ENSMUSG00000030641.11	ENSMUST00000208356.2	840	7	0	-2624	0	0	multi-exon	FALSE	canonical	3	86	junction_4	58.4648517392193	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTTTTTGTTATAATTT	NA	False	NA	-1	True	AGTAAA	-18	NA	92523445	92506732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_92509521_92510607_92510726_92511532_92511695_92515778_92515908_92517319_92517407_92521969_92522053_92523348
ENSMUSG00000030643.15_92390875_92485855_1	chr7	+	1504	5	FSM	ENSMUSG00000030643.15	ENSMUST00000032879.15	9456	5	64	7888	0	0	multi-exon	FALSE	canonical	3	12	junction_3	4.32290411644765	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGTCAGCAGTCTTCTTC	NA	False	NA	NA	False	AATAAA	-20	NA	92390874	92485855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_92391051_92469190_92469292_92473005_92473090_92478733_92478918_92484896
ENSMUSG00000030649.19_101545615_101548745_1	chr7	+	952	5	NIC	ENSMUSG00000030649.19	novel	937	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	98	junction_2	210.842802817644	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	7817	False	NA	19	True	AATAAA	-19	NA	101545614	101548745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_101545658_101546939_101547025_101547153_101547279_101547760_101547821_101548106
ENSMUSG00000030649.19_101545615_101548745_2	chr7	+	813	6	NNC	ENSMUSG00000030649.19	novel	937	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	220.456435605768	863	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	7817	False	NA	19	True	AATAAA	-19	NA	101545614	101548745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_101545658_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548388
ENSMUSG00000030649.19_101545615_101548745_3	chr7	+	796	6	NNC	ENSMUSG00000030649.19	novel	3103	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	219.67922068325	1938	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	7817	False	NA	19	True	AATAAA	-19	NA	101545614	101548745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_101545658_101546944_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUSG00000030649.19_101545615_101548745_4	chr7	+	796	6	NIC	ENSMUSG00000030649.19	novel	3103	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_2	189.568562794573	2420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	7817	False	NA	19	True	AATAAA	-19	NA	101545614	101548745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_101545658_101546939_101547025_101547153_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUSG00000030649.19_101545615_101548745_5	chr7	+	792	6	NIC	ENSMUSG00000030649.19	novel	3103	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	24	junction_5	215.24553421616	1040	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	7817	False	NA	19	True	AATAAA	-19	NA	101545614	101548745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_101545658_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548236_101548400
ENSMUSG00000030649.19_101546168_101548745_1	chr7	+	844	6	NNC	ENSMUSG00000030649.19	novel	2797	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	208.612559545201	570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	8370	False	NA	19	True	AATAAA	-19	NA	101546167	101548745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_101546254_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUSG00000030652.12_118124412_118132529_1	chr7	-	737	6	FSM	ENSMUSG00000030652.12	ENSMUST00000032887.4	914	6	50	127	-5	0	multi-exon	FALSE	canonical	3	921	junction_3	42.5234053198941	1036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGGTCGTAACTTAAGGA	6675	False	NA	-129	True	NA	NA	NA	118132529	118124411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_118124518_118125046_118125116_118126559_118126700_118127526_118127642_118128781_118128961_118132401
ENSMUSG00000030654.10_117719523_117728797_1	chr7	-	674	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	88	1409	0	0	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	7413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTAGTGTGGCTGCCGC	NA	False	NA	NA	False	GATAAA	-30	NA	117728797	117719522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
ENSMUSG00000030662.11_121148645_121184278_1	chr14	+	3376	26	FSM	ENSMUSG00000030662.11	ENSMUST00000032898.9	4518	26	9	1133	0	-552	multi-exon	TRUE	canonical	3	890	junction_17	126.92017018583	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTCTTTGTTTTGTTTTT	1840	False	NA	10	True	AATAAA	-19	NA	121148644	121184278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
ENSMUSG00000030662.11_121148645_121184830_1	chr14	+	3928	26	FSM	ENSMUSG00000030662.11	ENSMUST00000032898.9	4518	26	9	581	0	0	multi-exon	FALSE	canonical	3	890	junction_17	126.92017018583	962	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGTGTAGAACTTCAGT	1840	False	NA	18	True	AATAAA	-20	NA	121148644	121184830	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
ENSMUSG00000030662.11_121176271_121184830_1	chr14	+	1891	10	ISM	ENSMUSG00000030662.11	ENSMUST00000228277.2	4140	26	23012	0	23012	0	3prime_fragment	FALSE	canonical	3	890	junction_1	149.115913153344	857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGTGTAGAACTTCAGT	NA	False	NA	18	True	AATAAA	-20	NA	121176270	121184830	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
ENSMUSG00000030663.13_115692601_115703917_1	chr7	+	886	5	FSM	ENSMUSG00000030663.13	ENSMUST00000032899.12	1479	5	65	528	0	-149	multi-exon	FALSE	canonical	3	1664	junction_2	78.2527954772224	4497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGCATCATCTGCCCTC	NA	False	NA	13	True	AATAAA	-23	NA	115692600	115703917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_115692761_115698674_115698759_115701178_115701240_115702445_115702556_115703446
ENSMUSG00000030669.14_114230713_114235542_1	chr7	-	968	5	NIC	ENSMUSG00000030669.14	novel	994	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	37.532485928859	1350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGTCTTTGCTGTTACT	2084	False	NA	0	True	ATTAAA	-27	NA	114235542	114230712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_114231141_114231650_114231835_114233702_114233844_114234361_114234457_114235422
ENSMUSG00000030669.14_114230922_114235542_1	chr7	-	735	5	FSM	ENSMUSG00000030669.14	ENSMUST00000032906.11	994	5	50	209	0	-119	multi-exon	FALSE	canonical	3	77	junction_2	7.39932429347437	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTAGCAAATATGGTCC	2084	False	NA	NA	False	AATAAA	-24	NA	114235542	114230921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_114231141_114231650_114231835_114233702_114233844_114234361_114234457_114235446
ENSMUSG00000030672.13_126808062_126813460_1	chr7	+	736	8	NNC	ENSMUSG00000030672.13	novel	653	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_2	789.211619017255	3923	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	242	False	NA	32	True	AATAAA	-24	NA	126808061	126813460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_126808124_126808455_126808530_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030672.13_126808062_126813460_2	chr7	+	777	8	NIC	ENSMUSG00000030672.13	novel	653	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	59	junction_2	781.490099431979	4083	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	242	False	NA	32	True	AATAAA	-24	NA	126808061	126813460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_126808124_126808455_126808571_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030672.13_126811664_126813460_1	chr7	+	816	7	NIC	ENSMUSG00000030672.13	novel	268	4	NA	NA	-187	0	combination_of_known_junctions	FALSE	canonical	3	184	junction_1	671.232365793612	5084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	3844	False	NA	32	True	AATAAA	-24	NA	126811663	126813460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_126811880_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030672.13_126811851_126813460_1	chr7	+	643	7	NNC	ENSMUSG00000030672.13	novel	268	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	712.609621196783	4272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	4031	False	NA	32	True	AATAAA	-24	NA	126811850	126813460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_126811894_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030672.13_126811851_126813460_2	chr7	+	782	6	ISM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	1071	10	0	0	3prime_fragment	FALSE	canonical	3	600	junction_1	477.333007448678	4352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	4031	False	NA	32	True	AATAAA	-24	NA	126811850	126813460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030672.13_126811851_126813460_3	chr7	+	629	7	NIC	ENSMUSG00000030672.13	novel	268	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	184	junction_1	671.232365793612	4355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	4031	False	NA	32	True	AATAAA	-24	NA	126811850	126813460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_126811880_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030672.13_126812286_126813460_1	chr7	+	558	5	ISM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	1506	10	0	0	3prime_fragment	FALSE	canonical	3	1768	junction_4	19.9311314279947	4106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	4466	False	NA	32	True	AATAAA	-24	NA	126812285	126813460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUSG00000030674.6_126706440_126721216_1	chr7	-	1714	4	FSM	ENSMUSG00000030674.6	ENSMUST00000032912.6	2050	4	182	154	-3	-154	multi-exon	FALSE	canonical	3	73	junction_2	9.46337971105226	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTGTTGTTGTTGTTG	NA	False	NA	-6	True	NA	NA	NA	126721216	126706439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126707414_126707505_126707638_126707880_126708417_126721144
ENSMUSG00000030674.6_126706942_126721216_1	chr7	-	1212	4	FSM	ENSMUSG00000030674.6	ENSMUST00000032912.6	2050	4	182	656	-3	-656	multi-exon	FALSE	canonical	3	73	junction_2	9.46337971105226	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAATGAGTGGTTGGTAAA	NA	False	NA	1	True	NA	NA	NA	126721216	126706941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126707414_126707505_126707638_126707880_126708417_126721144
ENSMUSG00000030677.9_126626901_126641578_1	chr7	-	2178	13	NIC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	712	junction_7	45.9422191453569	994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAGCCTGGTTTTTGAGG	7990	False	NA	-4	True	AATACA	-15	NA	126641578	126626900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
ENSMUSG00000030678.8_126621306_126625446_1	chr7	-	1548	5	NNC	ENSMUSG00000030678.8	novel	2347	5	NA	NA	178	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_4	264.211444680203	734	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTGAGTTCCTAAG	508	False	NA	-31	True	AATAAA	-14	NA	126625446	126621305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_126622341_126622648_126622879_126623615_126623788_126624047_126624112_126625399
ENSMUSG00000030680.7_126614237_126615656_1	chr7	-	530	3	FSM	ENSMUSG00000107068.2	ENSMUST00000202798.2	1412	3	868	14	868	0	multi-exon	FALSE	canonical	3	276	junction_2	10	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGGCGTGGTGGCGCACG	9833	False	NA	-34	True	AATAAA	-14	NA	126615656	126614236	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126614642_126615371_126615455_126615614
ENSMUSG00000030680.7_126614237_126616213_1	chr7	-	1087	3	FSM	ENSMUSG00000107068.2	ENSMUST00000202798.2	1412	3	311	14	311	0	multi-exon	FALSE	canonical	3	276	junction_2	10	734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGGCGTGGTGGCGCACG	9741	False	NA	-34	True	AATAAA	-14	NA	126616213	126614236	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126614642_126615371_126615455_126615614
ENSMUSG00000030681.19_126586032_126588126_1	chr7	-	700	4	ISM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	25667	0	22911	0	3prime_fragment	FALSE	canonical	3	125	junction_3	4.92160768674447	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTTTCCCTCTTAT	6898	False	NA	0	True	AATAAA	-21	NA	126588126	126586031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997
ENSMUSG00000030681.19_126586032_126589053_1	chr7	-	1024	5	ISM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	24740	0	21984	0	3prime_fragment	FALSE	canonical	3	108	junction_4	10.7004672795163	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTTTCCCTCTTAT	5971	False	NA	0	True	AATAAA	-21	NA	126589053	126586031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997_126588115_126588717
ENSMUSG00000030682.5_126575550_126579334_1	chr7	+	1510	6	FSM	ENSMUSG00000030682.5	ENSMUST00000032920.5	1974	6	464	0	0	0	multi-exon	FALSE	canonical	3	352	junction_2	28.9344085821708	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATGTGTTTACTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	126575549	126579334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126575979_126576089_126576225_126577433_126577588_126578086_126578169_126578493_126578576_126578706
ENSMUSG00000030682.5_126575550_126579671_1	chr7	+	1847	6	FSM	ENSMUSG00000030682.5	ENSMUST00000032920.5	1974	6	464	-337	0	0	multi-exon	FALSE	canonical	3	352	junction_2	28.9344085821708	708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTTTCTCAGAGCATG	NA	False	NA	22	True	NA	NA	NA	126575549	126579671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126575979_126576089_126576225_126577433_126577588_126578086_126578169_126578493_126578576_126578706
ENSMUSG00000030682.5_126575630_126579671_1	chr7	+	1767	6	FSM	ENSMUSG00000030682.5	ENSMUST00000032920.5	1974	6	544	-337	0	0	multi-exon	FALSE	canonical	3	352	junction_2	28.9344085821708	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTTTCTCAGAGCATG	NA	False	NA	22	True	NA	NA	NA	126575629	126579671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126575979_126576089_126576225_126577433_126577588_126578086_126578169_126578493_126578576_126578706
ENSMUSG00000030689.16_126451605_126461018_1	chr7	-	1082	7	FSM	ENSMUSG00000030689.16	ENSMUST00000153764.8	719	7	-114	-249	-2	0	multi-exon	FALSE	canonical	3	53	junction_2	323.952156961487	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTCCTTTCCTCTA	9186	False	NA	-4	True	ATTAAA	-15	NA	126461018	126451604	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126452164_126456397_126456464_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876
ENSMUSG00000030689.16_126451605_126461018_2	chr7	-	1127	7	NNC	ENSMUSG00000030689.16	novel	1973	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	333.021729354441	421	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTCCTTTCCTCTA	9186	False	NA	-4	True	ATTAAA	-15	NA	126461018	126451604	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_126452164_126456397_126456515_126456847_126456954_126457045_126457125_126460411_126460465_126460647_126460719_126460876
ENSMUSG00000030689.16_126451605_126461018_3	chr7	-	1068	7	NIC	ENSMUSG00000030689.16	novel	1973	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_3	312.41341022576	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTCCTTTCCTCTA	9186	False	NA	-4	True	ATTAAA	-15	NA	126461018	126451604	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_126452164_126456397_126456515_126456847_126456895_126457045_126457125_126460411_126460465_126460647_126460719_126460876
ENSMUSG00000030689.16_126451605_126461018_4	chr7	-	1133	7	FSM	ENSMUSG00000030689.16	ENSMUST00000106343.3	1973	7	-8	848	-2	0	multi-exon	FALSE	canonical	3	695	junction_1	102.030496530313	1150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTCCTTTCCTCTA	9186	False	NA	-4	True	ATTAAA	-15	NA	126461018	126451604	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876
ENSMUSG00000030695.17_126394406_126396609_1	chr7	-	1050	7	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	314	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7597.09100942957	710	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	129	False	NA	-3	True	AATAAA	-18	NA	126396609	126394405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_126394687_126394784_126394985_126395128_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508
ENSMUSG00000030695.17_126394406_126398354_1	chr7	-	1410	8	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	7080.45531223603	1121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126398354	126394405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396482_126396721_126396815_126396949_126398216
ENSMUSG00000030695.17_126394406_126398354_2	chr7	-	1422	8	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	7080.45531223603	1535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126398354	126394405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396470_126396721_126396815_126396949_126398216
ENSMUSG00000030695.17_126394406_126398354_3	chr7	-	1431	9	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	6715.62710679353	7502	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126398354	126394405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396823_126396949_126398216
ENSMUSG00000030695.17_126394406_126398354_4	chr7	-	1534	8	NIC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-12	0	intron_retention	FALSE	canonical	3	19253	junction_4	590.139658323799	2063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126398354	126394405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396949_126398216
ENSMUSG00000030695.17_126394406_126398354_5	chr7	-	1420	9	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6644.36332540598	2537	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126398354	126394405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_126394687_126394803_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
ENSMUSG00000030695.17_126394406_126398354_6	chr7	-	1427	8	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	7080.45531223603	1776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126398354	126394405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395971_126396508_126396721_126396815_126396949_126398216
ENSMUSG00000030695.17_126394406_126398354_7	chr7	-	1434	9	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6679.8498567988	8634	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126398354	126394405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395393_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
ENSMUSG00000030695.17_126394406_126398354_8	chr7	-	1431	9	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	1	30	junction_1	6634.46172929651	6252	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126398354	126394405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_126394679_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
ENSMUSG00000030697.8_126385038_126391669_1	chr7	-	1354	9	NNC	ENSMUSG00000030697.8	novel	1359	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	858.12568281109	8672	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGGTTCTGTCAGGTTTG	5069	False	NA	NA	False	AATAAA	-15	NA	126391669	126385037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388201_126388248_126391232_126391396_126391594
ENSMUSG00000030706.18_100198327_100232309_1	chr7	-	907	8	NNC	ENSMUSG00000030706.18	novel	4285	8	NA	NA	0	117	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	169.592669267831	4444	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTTTGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	100232309	100198326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214409_100214487_100220458_100220497_100223668_100223722_100232196
ENSMUSG00000030706.18_100198327_100232309_2	chr7	-	904	8	NNC	ENSMUSG00000030706.18	novel	4285	8	NA	NA	0	117	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	169.592669267831	4248	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTTTGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	100232309	100198326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209113_100214400_100214487_100220458_100220497_100223668_100223722_100232196
ENSMUSG00000030706.18_100198327_100232309_3	chr7	-	863	7	NIC	ENSMUSG00000030706.18	novel	4285	8	NA	NA	0	117	combination_of_known_junctions	FALSE	canonical	1	5	junction_6	180.206363187689	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTTTGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	100232309	100198326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214400_100214487_100220458_100220497_100232196
ENSMUSG00000030706.18_100198327_100232309_4	chr7	-	830	7	NIC	ENSMUSG00000030706.18	novel	4285	8	NA	NA	0	117	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	182.238320765846	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTTTGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	100232309	100198326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100220458_100220497_100223668_100223722_100232196
ENSMUSG00000030706.18_100198327_100232309_5	chr7	-	907	8	NNC	ENSMUSG00000030706.18	novel	4285	8	NA	NA	0	117	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	168.939912032506	4599	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTTTGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	100232309	100198326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209116_100214400_100214487_100220458_100220497_100223668_100223722_100232196
ENSMUSG00000030706.18_100198327_100232309_6	chr7	-	1064	8	NIC	ENSMUSG00000030706.18	novel	4285	8	NA	NA	0	117	combination_of_known_junctions	TRUE	canonical	2	4	junction_5	169.179291442721	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTTTGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	100232309	100198326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214400_100214635_100220458_100220497_100223668_100223722_100232196
ENSMUSG00000030706.18_100198327_100232309_7	chr7	-	890	7	NNC	ENSMUSG00000030706.18	novel	4285	8	NA	NA	0	117	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	180.685192777075	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTTTGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	100232309	100198326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214400_100214487_100223656_100223722_100232196
ENSMUSG00000030706.18_100198327_100232309_8	chr7	-	916	8	FSM	ENSMUSG00000030706.18	ENSMUST00000150042.8	4285	8	0	3369	0	117	multi-exon	FALSE	canonical	3	320	junction_4	76.5855530682877	5087	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTTTGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	100232309	100198326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214400_100214487_100220458_100220497_100223668_100223722_100232196
ENSMUSG00000030706.18_100198327_100256845_1	chr7	-	884	8	NIC	ENSMUSG00000030706.18	novel	4285	8	NA	NA	0	117	combination_of_known_junctions	FALSE	canonical	1	13	junction_7	166.611487464406	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTTTGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	100256845	100198326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214400_100214487_100220458_100220497_100223668_100223722_100256764
ENSMUSG00000030707.16_126298945_126300399_1	chr7	-	723	4	NIC	ENSMUSG00000030707.16	novel	1747	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	7.36357401145817	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCAGACTCCGGTGAACT	NA	False	NA	NA	False	AATAAA	-21	NA	126300399	126298944	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_126299158_126299428_126299645_126299755_126299814_126300163
ENSMUSG00000030708.15_100152228_100153984_1	chr7	-	638	3	ISM	ENSMUSG00000030708.15	ENSMUST00000054923.9	847	7	7004	-58	7004	0	3prime_fragment	FALSE	canonical	3	56	junction_2	3	100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGCTATGATGGGAAGTGA	NA	False	NA	-9	True	AATAAA	-13	NA	100153984	100152227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_100152518_100153122_100153200_100153713
ENSMUSG00000030708.15_100152228_100161003_1	chr7	-	962	7	ISM	ENSMUSG00000030708.15	ENSMUST00000130534.8	1159	8	1603	0	-15	0	3prime_fragment	FALSE	canonical	3	16	junction_5	19.1020650425259	311	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGCTATGATGGGAAGTGA	NA	False	NA	-9	True	AATAAA	-13	NA	100161003	100152227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_100152518_100153122_100153200_100153713_100153828_100155288_100155403_100156582_100156741_100159901_100160064_100160956
ENSMUSG00000030708.15_100152228_100161003_2	chr7	-	804	6	ISM	ENSMUSG00000030708.15	ENSMUST00000154516.3	905	7	3000	-60	-15	0	3prime_fragment	FALSE	canonical	3	47	junction_4	7.5736384915046	327	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGCTATGATGGGAAGTGA	NA	False	NA	-9	True	AATAAA	-13	NA	100161003	100152227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_100152518_100153122_100153200_100153713_100153828_100155288_100155403_100159901_100160064_100160956
ENSMUSG00000030714.15_126248494_126271951_1	chr7	+	1149	10	NNC	ENSMUSG00000030714.15	novel	1312	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	149.462576347376	783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTCTCCTGGGCCTCAC	124	False	NA	33	True	AATAAA	-16	NA	126248493	126271951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_126248643_126260220_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
ENSMUSG00000030714.15_126248494_126271951_3	chr7	+	1153	10	FSM	ENSMUSG00000030714.15	ENSMUST00000032956.10	1312	10	13	146	0	0	multi-exon	FALSE	canonical	3	419	junction_3	31.8433666561813	1914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTCTCCTGGGCCTCAC	124	False	NA	33	True	AATAAA	-16	NA	126248493	126271951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
ENSMUSG00000030714.15_126248494_126271951_4	chr7	+	1146	10	NIC	ENSMUSG00000030714.15	novel	1312	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_6	148.255118788235	1299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTCTCCTGGGCCTCAC	124	False	NA	33	True	AATAAA	-16	NA	126248493	126271951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270833_126270905_126271053_126271209_126271246_126271327_126271491_126271741
ENSMUSG00000030717.10_126222424_126224661_1	chr7	-	638	3	NNC	ENSMUSG00000030717.10	novel	829	3	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1857.5	13145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACAGCTTTGGCGTGTGTTG	NA	False	NA	-11	True	AATAAA	-44	NA	126224661	126222423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_126222747_126224057_126224206_126224494
ENSMUSG00000030717.10_126222424_126224661_2	chr7	-	639	3	FSM	ENSMUSG00000030717.10	ENSMUST00000032961.4	829	3	187	3	-14	0	multi-exon	FALSE	canonical	3	3716	junction_2	16	14124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACAGCTTTGGCGTGTGTTG	NA	False	NA	-11	True	AATAAA	-44	NA	126224661	126222423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126222752_126224061_126224206_126224494
ENSMUSG00000030720.17_126171262_126182398_1	chr7	-	1675	15	FSM	ENSMUSG00000030720.17	ENSMUST00000032962.11	2386	15	21	690	0	0	multi-exon	FALSE	canonical	3	116	junction_11	19.7815880173912	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTCCTTTTTGTGCAGTC	NA	False	NA	-6	True	AATAAA	-14	NA	126182398	126171261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171
ENSMUSG00000030722.8_125982215_125995909_1	chr7	-	3199	8	FSM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	0	189	0	-189	multi-exon	FALSE	canonical	3	215	junction_7	21.1920277655614	916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGCCAACTCCCTTTTTT	NA	False	NA	-2	True	AATAAA	-27	NA	125995909	125982214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_125984312_125986573_125986684_125986783_125986929_125989557_125989745_125989834_125989916_125990442_125990567_125995113_125995187_125995527
ENSMUSG00000030722.8_125984049_125995909_1	chr7	-	1365	8	FSM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	0	2023	0	0	multi-exon	FALSE	canonical	3	215	junction_7	21.1920277655614	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGTTTACTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	125995909	125984048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_125984312_125986573_125986684_125986783_125986929_125989557_125989745_125989834_125989916_125990442_125990567_125995113_125995187_125995527
ENSMUSG00000030726.17_99732617_99770693_1	chr7	-	1691	12	FSM	ENSMUSG00000030726.17	ENSMUST00000032969.14	3069	12	79	1299	-20	0	multi-exon	FALSE	canonical	3	502	junction_4	47.2898570362863	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCTGCCTAGGAGAATTC	NA	False	NA	-10	True	TATAAA	-17	NA	99770693	99732616	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742689_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99768880_99768937_99770570
ENSMUSG00000030738.12_126146083_126146681_1	chr7	-	408	3	ISM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	18902	456	18695	-456	3prime_fragment	FALSE	canonical	3	2679	junction_1	101	394	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	-8	True	ATTAAA	-18	NA	126146681	126146082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_126146253_126146356_126146520_126146606
ENSMUSG00000030738.12_126146083_126165583_1	chr7	-	3055	20	ISM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	0	456	0	-456	intron_retention	FALSE	canonical	3	1924	junction_14	261.383841247645	2584	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	-8	True	ATTAAA	-18	NA	126165583	126146082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250
ENSMUSG00000030738.12_126162902_126165583_1	chr7	-	484	5	ISM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	0	17275	0	-726	5prime_fragment	FALSE	canonical	3	1990	junction_4	250.479914364406	677	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGATGAATAAAAACA	NA	False	NA	-4	True	NA	NA	NA	126165583	126162901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
ENSMUSG00000030738.12_126162902_126165583_2	chr7	-	612	4	ISM	ENSMUSG00000030738.12	ENSMUST00000180459.3	926	7	-53	1141	0	-726	5prime_fragment	FALSE	canonical	3	2501	junction_1	44.1915024511375	634	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGATGAATAAAAACA	NA	False	NA	-4	True	NA	NA	NA	126165583	126162901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_126162925_126163587_126163778_126163874_126163941_126165250
ENSMUSG00000030739.19_44255229_44263549_2	chr7	-	1546	7	NNC	ENSMUSG00000030739.19	novel	1438	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	11	junction_6	26.7669987526099	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGGCTGCGTTTCTAA	NA	False	NA	-3	True	AATAAA	-15	NA	44263549	44255228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263266
ENSMUSG00000030742.8_125962999_125963453_1	chr7	-	301	2	ISM	ENSMUSG00000030742.8	ENSMUST00000205426.2	634	4	605	-77	605	0	3prime_fragment	FALSE	canonical	3	39	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTCGTTGTCTTCTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	125963453	125962998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_125963214_125963367
ENSMUSG00000030742.8_125962999_125968742_1	chr7	-	1229	12	NIC	ENSMUSG00000030742.8	novel	1235	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_9	13.1689592452595	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTCGTTGTCTTCTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	125968742	125962998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_125963214_125963367_125963473_125963569_125963633_125963730_125963794_125967047_125967143_125967217_125967279_125967357_125967388_125967470_125967536_125967666_125967713_125967973_125968009_125968113_125968142_125968319
ENSMUSG00000030744.14_99128089_99132857_1	chr7	-	834	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	88	986	0	0	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	398108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGACTGGATTGTGTCC	8423	False	NA	-34	True	AATAAA	-36	NA	99132857	99128088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
ENSMUSG00000030750.14_125066812_125090603_1	chr7	-	949	8	NNC	ENSMUSG00000030750.14	novel	1120	8	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	380.004887186618	6265	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTGTGTGAGGTTGGGT	NA	False	NA	-11	True	AGTAAA	-33	NA	125090603	125066811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_125067016_125067450_125067572_125068200_125068312_125070284_125070432_125071046_125071125_125071279_125071402_125085509_125085657_125090584
ENSMUSG00000030750.14_125066812_125090603_2	chr7	-	955	8	FSM	ENSMUSG00000030750.14	ENSMUST00000033006.14	1120	8	165	0	-32	0	multi-exon	FALSE	canonical	3	553	junction_7	177.832872698624	6421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTGTGTGAGGTTGGGT	NA	False	NA	-11	True	AGTAAA	-33	NA	125090603	125066811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_125067016_125067450_125067572_125068200_125068318_125070284_125070432_125071046_125071125_125071279_125071402_125085509_125085657_125090584
ENSMUSG00000030750.14_125066812_125090603_3	chr7	-	916	8	NNC	ENSMUSG00000030750.14	novel	1120	8	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	366.156039002444	5481	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTGTGTGAGGTTGGGT	NA	False	NA	-11	True	AGTAAA	-33	NA	125090603	125066811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_125067016_125067450_125067572_125068200_125068318_125070323_125070432_125071046_125071125_125071279_125071402_125085509_125085657_125090584
ENSMUSG00000030751.19_113863841_113875295_1	chr7	-	1134	10	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-6	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	885.170095950734	4695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875295	113863840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869619_113870277_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
ENSMUSG00000030751.19_113863841_113875295_10	chr7	-	1138	10	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	886.159518009046	12805	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875295	113863840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_113864192_113865668_113865780_113866360_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
ENSMUSG00000030751.19_113863841_113875295_11	chr7	-	1131	10	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	885.879656292038	6474	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875295	113863840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873684_113875235
ENSMUSG00000030751.19_113863841_113875295_12	chr7	-	1137	10	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	887.193202057916	3747	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875295	113863840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873052_113873151_113873260_113873363_113873650_113873696_113875235
ENSMUSG00000030751.19_113863841_113875295_13	chr7	-	1138	9	NIC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	898.180165320411	1656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875295	113863840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113875195
ENSMUSG00000030751.19_113863841_113875295_2	chr7	-	1131	10	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	887.193202057916	4347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875295	113863840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870362_113873042_113873151_113873260_113873363_113873650_113873696_113875235
ENSMUSG00000030751.19_113863841_113875295_3	chr7	-	1135	10	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	885.170095950734	15747	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875295	113863840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869631_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
ENSMUSG00000030751.19_113863841_113875295_4	chr7	-	1183	10	FSM	ENSMUSG00000030751.19	ENSMUST00000135570.8	960	10	-34	-189	-6	0	multi-exon	FALSE	canonical	3	33	junction_9	875.758056108824	6402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875295	113863840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875195
ENSMUSG00000030751.19_113863841_113875295_5	chr7	-	1134	10	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	878.422084208208	3882	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875295	113863840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873142_113873260_113873363_113873650_113873696_113875235
ENSMUSG00000030751.19_113863841_113875295_6	chr7	-	1149	10	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	884.556818656721	22966	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875295	113863840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869645_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
ENSMUSG00000030751.19_113863841_113875295_7	chr7	-	1138	10	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	878.422084208208	7046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875295	113863840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873142_113873256_113873363_113873650_113873696_113875235
ENSMUSG00000030751.19_113863841_113875295_8	chr7	-	1134	10	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	871.718354108074	14702	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875295	113863840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_113864183_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
ENSMUSG00000030751.19_113863841_113875295_9	chr7	-	1132	10	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	878.422084208208	3478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875295	113863840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873136_113873256_113873363_113873650_113873696_113875235
ENSMUSG00000030751.19_113864030_113875295_1	chr7	-	954	10	FSM	ENSMUSG00000030751.19	ENSMUST00000033008.10	1201	10	58	189	-6	0	multi-exon	FALSE	canonical	3	2548	junction_6	196.061655709387	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTCCAGATGTAAGTTTT	NA	False	NA	NA	False	TTTAAA	-39	NA	113875295	113864029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
ENSMUSG00000030754.10_113814794_113818796_1	chr7	-	661	4	ISM	ENSMUSG00000030754.10	ENSMUST00000033012.9	3346	22	35150	0	-1400	0	3prime_fragment	FALSE	canonical	3	511	junction_2	10.0332779621949	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTATCTGTGGGATTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	113818796	113814793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_113815173_113815697_113815854_113816856_113816947_113818760
ENSMUSG00000030760.15_97900660_97958713_1	chr7	-	931	6	ISM	ENSMUSG00000030760.15	ENSMUST00000151258.8	1440	12	22	35010	0	437	5prime_fragment	FALSE	canonical	3	223	junction_1	6.40624695121879	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGGAATTATTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	97958713	97900659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
ENSMUSG00000030763.8_122977279_123029571_1	chr7	+	1280	11	NNC	ENSMUSG00000030763.8	novel	1369	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	111.287959815966	2355	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTCTGCTACATCTGTAC	6898	False	NA	21	True	AATAAA	-21	NA	122977278	123029571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_122977479_122999660_122999753_123000666_123000789_123002057_123002135_123003645_123003708_123009946_123010050_123017440_123017562_123020760_123020863_123021929_123022022_123027321_123027415_123029355
ENSMUSG00000030763.8_122977279_123029571_2	chr7	+	1195	10	NNC	ENSMUSG00000030763.8	novel	1286	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_5	92.0315297554909	821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTCTGCTACATCTGTAC	6898	False	NA	21	True	AATAAA	-21	NA	122977278	123029571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_122977479_122999660_122999753_123000666_123000789_123002057_123002135_123003645_123003721_123017440_123017562_123020760_123020863_123021929_123022022_123027316_123027415_123029355
ENSMUSG00000030768.13_182877757_183003049_1	chr1	-	1430	9	ISM	ENSMUSG00000030768.13	ENSMUST00000003035.12	4984	10	0	9927	0	0	5prime_fragment	FALSE	canonical	3	56	junction_6	14.115040736746	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATCTGCCTCTGCCTTGC	NA	False	NA	-2	True	AATAAA	-13	NA	183003049	182877756	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182955059_182955188_182984515_182984604_183002886
ENSMUSG00000030770.16_112027112_112188181_1	chr7	+	1537	13	FSM	ENSMUSG00000030770.16	ENSMUST00000033030.14	4454	13	199	2718	0	4	multi-exon	FALSE	canonical	2	13	junction_2	5.24603024517905	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTGCTCAAGTTCATTAGG	3528	False	NA	NA	False	AATAAA	-38	NA	112027111	112188181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_112027308_112143383_112143474_112143939_112144011_112146717_112146821_112159135_112159277_112166969_112167086_112172077_112172137_112174561_112174582_112175606_112175669_112176142_112176212_112178862_112178965_112180156_112180230_112187746
ENSMUSG00000030774.14_97492142_97560489_1	chr7	+	1966	15	FSM	ENSMUSG00000030774.14	ENSMUST00000033040.12	3065	15	0	1099	0	0	multi-exon	TRUE	canonical	3	24	junction_1	56.3067853960129	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCATTTCCTGATCTAGTG	NA	False	NA	45	True	NA	NA	NA	97492141	97560489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_97492349_97503642_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
ENSMUSG00000030774.14_97547730_97560489_1	chr7	+	855	6	ISM	ENSMUSG00000030774.14	ENSMUST00000207017.2	952	7	4608	0	4608	0	3prime_fragment	FALSE	canonical	3	198	junction_5	13.979985693841	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCATTTCCTGATCTAGTG	NA	False	NA	45	True	NA	NA	NA	97547729	97560489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
ENSMUSG00000030774.14_97547730_97560673_1	chr7	+	1039	6	ISM	ENSMUSG00000030774.14	ENSMUST00000207017.2	952	7	4608	-184	4608	184	3prime_fragment	FALSE	canonical	3	198	junction_5	13.979985693841	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAATCTCAGCCATCCCAT	NA	False	NA	5	True	AATAAA	-16	NA	97547729	97560673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
ENSMUSG00000030780.16_127883619_127897281_1	chr7	-	936	7	NNC	ENSMUSG00000030780.16	novel	464	3	NA	NA	0	3518	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	59.0124751406194	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCATCTAGATACCCTTGG	1167	False	NA	NA	False	AATAAA	-18	NA	127897281	127883618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_127883833_127884284_127884387_127887435_127887542_127887630_127887664_127889761_127889808_127896633_127896749_127896961
ENSMUSG00000030781.14_127869968_127871602_1	chr7	+	970	4	ISM	ENSMUSG00000030781.14	ENSMUST00000118169.8	2277	14	5120	0	222	0	3prime_fragment	FALSE	canonical	1	3	junction_1	2.82842712474619	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTTGTGGCTGAAACAT	NA	False	NA	NA	False	AATAAA	-16	NA	127869967	127871602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_127870125_127870206_127870423_127870920_127871051_127871135
ENSMUSG00000030785.9_127804786_127805559_1	chr7	-	501	3	FSM	ENSMUSG00000030785.9	ENSMUST00000033049.9	680	3	0	179	0	-179	multi-exon	FALSE	canonical	3	110	junction_1	3.5	695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCCTCTGGCTCTTTGG	5383	False	NA	-6	True	AATAAA	-14	NA	127805559	127804785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127804985_127805071_127805209_127805394
ENSMUSG00000030785.9_127804786_127805618_1	chr7	-	560	3	FSM	ENSMUSG00000030785.9	ENSMUST00000033049.9	680	3	-59	179	-59	-179	multi-exon	FALSE	canonical	3	110	junction_1	3.5	880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCCTCTGGCTCTTTGG	5324	False	NA	-6	True	AATAAA	-14	NA	127805618	127804785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127804985_127805071_127805209_127805394
ENSMUSG00000030792.9_44856949_44861236_1	chr7	-	832	5	FSM	ENSMUSG00000030792.9	ENSMUST00000033057.9	1149	5	311	6	0	0	multi-exon	FALSE	canonical	3	39	junction_1	6.17960354715414	328	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCAATCTCCTTTTGGTAT	8612	False	NA	-4	True	AATAAA	-17	NA	44861236	44856948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44857323_44859536_44859627_44859754_44859896_44860824_44860995_44861179
ENSMUSG00000030793.5_127591268_127592908_1	chr7	-	1281	3	FSM	ENSMUSG00000030793.5	ENSMUST00000033056.5	3800	3	131	2388	131	-456	multi-exon	FALSE	canonical	3	1219	junction_2	45	16300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAAGCCTTTTTTTTTTT	NA	False	NA	-4	True	NA	NA	NA	127592908	127591267	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127592138_127592286_127592344_127592554
ENSMUSG00000030793.5_127591805_127592699_1	chr7	-	535	3	FSM	ENSMUSG00000030793.5	ENSMUST00000033056.5	3800	3	340	2925	0	-993	multi-exon	FALSE	canonical	3	1219	junction_2	45	1555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTGGGATGTTTTTGCT	NA	False	NA	-5	True	AAAACA	-18	NA	127592699	127591804	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127592138_127592286_127592344_127592554
ENSMUSG00000030793.5_127591805_127592908_1	chr7	-	744	3	FSM	ENSMUSG00000030793.5	ENSMUST00000033056.5	3800	3	131	2925	131	-993	multi-exon	FALSE	canonical	3	1219	junction_2	45	15763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTGGGATGTTTTTGCT	NA	False	NA	-5	True	AAAACA	-18	NA	127592908	127591804	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127592138_127592286_127592344_127592554
ENSMUSG00000030795.19_127579356_127581204_1	chr7	+	551	4	ISM	ENSMUSG00000030795.19	ENSMUST00000121616.9	1102	9	12676	0	0	0	3prime_fragment	FALSE	canonical	3	1177	junction_2	94.595043327979	3318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTCCCCCAGTTTAC	5487	False	NA	37	True	ATTAAA	-20	NA	127579355	127581204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_127579419_127580362_127580464_127580582_127580728_127580962
ENSMUSG00000030795.19_127580671_127581204_1	chr7	+	299	2	ISM	ENSMUSG00000030795.19	ENSMUST00000121616.9	1102	9	13991	0	1283	0	3prime_fragment	FALSE	canonical	3	1395	junction_1	0	2583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTCCCCCAGTTTAC	6802	False	NA	37	True	ATTAAA	-20	NA	127580670	127581204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_127580728_127580962
ENSMUSG00000030796.18_44865215_44883059_1	chr7	+	2167	12	NIC	ENSMUSG00000030796.18	novel	2140	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	97.4747265400093	887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCAAAAACCCAAAGGGGA	5468	False	NA	NA	False	AATAAA	-29	NA	44865214	44883059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_44865331_44866636_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
ENSMUSG00000030796.18_44879308_44883059_1	chr7	+	1238	4	NNC	ENSMUSG00000030796.18	novel	400	3	NA	NA	-1425	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	171.639803723444	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCAAAAACCCAAAGGGGA	NA	False	NA	NA	False	AATAAA	-29	NA	44879307	44883059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_44879410_44880732_44880895_44881606_44881760_44882238
ENSMUSG00000030796.18_44883065_44888481_1	chr7	+	1135	8	NIC	ENSMUSG00000030796.18	novel	2140	12	NA	NA	1493	5413	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCACGTGGGTCCTGGGA	NA	False	NA	NA	False	GGGGCT	-14	NA	44883064	44888481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_44883403_44884107_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888383
ENSMUSG00000030798.16_44865215_44883059_1	chr7	-	2088	12	NNC	ENSMUSG00000030798.16	novel	1227	8	NA	NA	1823	17841	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	735	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGAGAAAGTTGCCGGGA	9624	False	NA	NA	False	NA	NA	NA	44883059	44865214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_44865257_44866636_44866870_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
ENSMUSG00000030798.16_44865215_44883059_2	chr7	-	2135	12	NIC	ENSMUSG00000030798.16	novel	1227	8	NA	NA	1823	17841	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGAGAAAGTTGCCGGGA	9624	False	NA	NA	False	NA	NA	NA	44883059	44865214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_44865299_44866636_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
ENSMUSG00000030802.15_127503254_127507780_1	chr7	+	1787	12	NNC	ENSMUSG00000030802.15	novel	3405	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	177.320879241211	1339	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGGGCCCCAAATGTTG	NA	False	NA	28	True	ATTAAA	-20	NA	127503253	127507780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_127503342_127503934_127504298_127504393_127504463_127504546_127504653_127504920_127504969_127505044_127505165_127505243_127505343_127505520_127505595_127506390_127506520_127506613_127506704_127507092_127507252_127507338
ENSMUSG00000030802.15_127503254_127507780_2	chr7	+	1792	12	FSM	ENSMUSG00000030802.15	ENSMUST00000071056.14	3405	12	0	1613	0	0	multi-exon	FALSE	canonical	3	550	junction_9	38.261820946588	1364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGGGCCCCAAATGTTG	NA	False	NA	28	True	ATTAAA	-20	NA	127503253	127507780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_127503342_127503934_127504298_127504393_127504463_127504541_127504653_127504920_127504969_127505044_127505165_127505243_127505343_127505520_127505595_127506390_127506520_127506613_127506704_127507092_127507252_127507338
ENSMUSG00000030802.15_127503254_127507780_3	chr7	+	1786	12	NNC	ENSMUSG00000030802.15	novel	3405	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	177.404053919597	1345	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGGGCCCCAAATGTTG	NA	False	NA	28	True	ATTAAA	-20	NA	127503253	127507780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_127503342_127503934_127504298_127504393_127504463_127504541_127504653_127504926_127504969_127505044_127505165_127505243_127505343_127505520_127505595_127506390_127506520_127506613_127506704_127507092_127507252_127507338
ENSMUSG00000030805.15_127440936_127448191_1	chr7	+	1526	10	NIC	ENSMUSG00000030805.15	novel	1456	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	172	junction_3	25.7681974534502	793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTGCAGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	127440935	127448191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447840_127447922
ENSMUSG00000030805.15_127440936_127448191_2	chr7	+	1539	10	FSM	ENSMUSG00000030805.15	ENSMUST00000121705.8	1316	10	-204	-19	0	0	multi-exon	FALSE	canonical	3	172	junction_3	22.9965107390847	776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTGCAGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	127440935	127448191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447671_127447740
ENSMUSG00000030805.15_127441142_127448191_1	chr7	+	1250	11	FSM	ENSMUSG00000030805.15	ENSMUST00000033075.14	1456	11	206	0	0	0	multi-exon	FALSE	canonical	3	172	junction_3	24.7872951327893	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTGCAGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	127441141	127448191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447671_127447740_127447840_127447922
ENSMUSG00000030805.15_127447563_127448191_1	chr7	+	476	3	ISM	ENSMUSG00000030805.15	ENSMUST00000033075.14	1456	11	6627	0	0	0	3prime_fragment	FALSE	canonical	3	173	junction_2	11.5	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTGCAGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	127447562	127448191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_127447671_127447740_127447840_127447922
ENSMUSG00000030811.15_127366556_127368103_1	chr7	+	1460	2	ISM	ENSMUSG00000030811.15	ENSMUST00000188580.3	2601	9	19237	-204	19110	3	3prime_fragment	FALSE	canonical	3	128	junction_1	0	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGTTTGGCTCTTCCCA	NA	False	NA	7	True	NA	NA	NA	127366555	127368103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_127366836_127366923
ENSMUSG00000030814.18_127304150_127307130_1	chr7	-	634	5	ISM	ENSMUSG00000030814.18	ENSMUST00000061468.9	1132	6	975	0	117	0	3prime_fragment	FALSE	canonical	3	471	junction_4	32.6993883734849	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCATGTCATTTCC	NA	False	NA	NA	False	AATAAA	-14	NA	127307130	127304149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_127304348_127304898_127304985_127306347_127306510_127306604_127306714_127307051
ENSMUSG00000030814.18_127304150_127307247_1	chr7	-	751	5	ISM	ENSMUSG00000030814.18	ENSMUST00000061468.9	1132	6	858	0	0	0	3prime_fragment	FALSE	canonical	3	471	junction_4	32.6993883734849	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCATGTCATTTCC	NA	False	NA	NA	False	AATAAA	-14	NA	127307247	127304149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_127304348_127304898_127304985_127306347_127306510_127306604_127306714_127307051
ENSMUSG00000030814.18_127304150_127307648_1	chr7	-	675	6	FSM	ENSMUSG00000030814.18	ENSMUST00000061468.9	1132	6	457	0	-14	0	multi-exon	FALSE	canonical	3	471	junction_4	29.8971570554794	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCATGTCATTTCC	NA	False	NA	NA	False	AATAAA	-14	NA	127307648	127304149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127304348_127304898_127304985_127306347_127306510_127306604_127306714_127307051_127307131_127307607
ENSMUSG00000030815.12_127172552_127182472_1	chr7	+	1510	9	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	38.180492401225	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCAGTGCCATGTCTGCT	NA	False	NA	19	True	AATAAA	-20	NA	127172551	127182472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_127172629_127173025_127173139_127176706_127176861_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUSG00000030815.12_127172552_127182472_2	chr7	+	1468	9	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_3	33.5016324229134	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCAGTGCCATGTCTGCT	NA	False	NA	19	True	AATAAA	-20	NA	127172551	127182472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_127172629_127173025_127173139_127176706_127176819_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUSG00000030824.18_45142303_45159798_1	chr7	-	2400	13	FSM	ENSMUSG00000030824.18	ENSMUST00000211765.2	4853	13	32	2421	11	229	multi-exon	FALSE	canonical	3	464	junction_7	37.8483817355511	933	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCTGTGGCTCAGTTGGC	NA	False	NA	-13	True	ATTAAA	-16	NA	45159798	45142302	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45143374_45143540_45143638_45144041_45144213_45144476_45144570_45144645_45144739_45144978_45145038_45147823_45147915_45148148_45148335_45149225_45149330_45151006_45151140_45152601_45152710_45159129_45159272_45159746
ENSMUSG00000030824.18_45142532_45159798_1	chr7	-	2171	13	FSM	ENSMUSG00000030824.18	ENSMUST00000211765.2	4853	13	32	2650	11	0	multi-exon	FALSE	canonical	3	464	junction_7	37.8483817355511	810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCCTGCCCTCTTCCAA	NA	False	NA	-4	True	AATAAA	-19	NA	45159798	45142531	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45143374_45143540_45143638_45144041_45144213_45144476_45144570_45144645_45144739_45144978_45145038_45147823_45147915_45148148_45148335_45149225_45149330_45151006_45151140_45152601_45152710_45159129_45159272_45159746
ENSMUSG00000030825.20_45204361_45216565_1	chr7	+	1176	9	FSM	ENSMUSG00000030825.20	ENSMUST00000107752.12	1400	9	44	180	0	-177	multi-exon	FALSE	canonical	3	159	junction_3	205.455591308682	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGTTCGCCCTTGGCT	NA	False	NA	7	True	NA	NA	NA	45204360	45216565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45204491_45205478_45205518_45205736_45205820_45207031_45207099_45208804_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
ENSMUSG00000030825.20_45208630_45216743_1	chr7	+	1210	5	ISM	ENSMUSG00000030825.20	ENSMUST00000210997.2	1315	9	3162	-1	0	1	3prime_fragment	FALSE	canonical	3	557	junction_3	22.2864869371554	2428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTGGAGTGGTCGTGTC	NA	False	NA	8	True	NA	NA	NA	45208629	45216743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
ENSMUSG00000030826.20_45219774_45239134_1	chr7	+	1574	11	FSM	ENSMUSG00000030826.20	ENSMUST00000033098.16	1772	11	197	1	0	0	multi-exon	FALSE	canonical	3	349	junction_4	47.8895604490164	1275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGCTATCATGCTCTAA	2452	False	NA	NA	False	AATAAA	-17	NA	45219773	45239134	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45219824_45224854_45224930_45225222_45225427_45234340_45234452_45234534_45234655_45234837_45235002_45237072_45237216_45237358_45237445_45237662_45237804_45237877_45237953_45238729
ENSMUSG00000030826.20_45234424_45239134_1	chr7	+	1245	7	NIC	ENSMUSG00000030826.20	novel	2081	11	NA	NA	-421	0	intron_retention	FALSE	canonical	3	353	junction_5	52.1016634411353	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGCTATCATGCTCTAA	8744	False	NA	NA	False	AATAAA	-17	NA	45234423	45239134	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_45234655_45234837_45235002_45237072_45237216_45237358_45237445_45237662_45237804_45237877_45237953_45238729
ENSMUSG00000030842.13_101555111_101561110_1	chr7	+	647	5	NNC	ENSMUSG00000030842.13	novel	1119	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	379.820023168869	792	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTCTGTCCTGCCCACT	7027	False	NA	28	True	GATAAA	-32	NA	101555110	101561110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_101555248_101558870_101559017_101559235_101559314_101559626_101559722_101560919
ENSMUSG00000030842.13_101555111_101561110_2	chr7	+	805	6	NNC	ENSMUSG00000030842.13	novel	1119	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	341.132818708491	857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTCTGTCCTGCCCACT	7027	False	NA	28	True	GATAAA	-32	NA	101555110	101561110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_101555248_101558870_101559017_101559235_101559314_101559626_101559754_101560479_101560614_101560927
ENSMUSG00000030842.13_101562191_101583037_1	chr7	+	789	5	Genic_Genomic	ENSMUSG00000030842.13	novel	1936	1	NA	NA	1167	7155	multi-exon	TRUE	non_canonical	0	0	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACGCCCTAGACGGCTCA	NA	False	NA	NA	False	NA	NA	NA	101562190	101583037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_101562420_101562641_101562791_101564768_101564975_101569843_101569982_101582970
ENSMUSG00000030844.12_127975345_127995409_1	chr7	-	775	3	NNC	ENSMUSG00000030844.12	novel	458	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	8.5	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTAGTCATTTCTACTT	9751	False	NA	NA	False	ATTAAA	-24	NA	127995409	127975344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_127975767_127990687_127990832_127995200
ENSMUSG00000030846.16_128044004_128045658_1	chr7	-	503	2	NNC	ENSMUSG00000030846.16	novel	1580	12	NA	NA	971	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGACTATAAATTTTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	128045658	128044003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_128044384_128045535
ENSMUSG00000030846.16_128044004_128062933_1	chr7	-	1434	12	FSM	ENSMUSG00000030846.16	ENSMUST00000033135.9	1580	12	146	0	0	0	multi-exon	FALSE	canonical	3	163	junction_7	29.2730095977351	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGACTATAAATTTTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	128062933	128044003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
ENSMUSG00000030850.18_129996075_130121310_1	chr7	-	1883	12	FSM	ENSMUSG00000030850.18	ENSMUST00000035458.15	4685	12	-50	2852	0	0	multi-exon	FALSE	canonical	3	144	junction_5	43.8843333177548	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGCAAGGTGTGCTTCA	NA	False	NA	44	True	NA	NA	NA	130121310	129996074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130105451_130105581_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121085
ENSMUSG00000030850.18_129996075_130121310_2	chr7	-	1883	12	FSM	ENSMUSG00000030850.18	ENSMUST00000033139.15	4735	12	0	2852	0	0	multi-exon	FALSE	canonical	3	115	junction_5	49.9651117950737	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGCAAGGTGTGCTTCA	NA	False	NA	44	True	NA	NA	NA	130121310	129996074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130106423_130106553_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121085
ENSMUSG00000030861.16_131012330_131047938_1	chr7	+	3346	11	FSM	ENSMUSG00000030861.16	ENSMUST00000015829.15	6081	11	0	2735	0	0	multi-exon	FALSE	canonical	3	100	junction_4	19.6022957839127	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAATTCTCCCTTTTTATG	NA	False	NA	21	True	AATAAA	-25	NA	131012329	131047938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_131012517_131026200_131026361_131027503_131027605_131030157_131030365_131031675_131031847_131033665_131033792_131035998_131036092_131039130_131039221_131042930_131043069_131045197_131045298_131045965
ENSMUSG00000030867.8_121758804_121769098_1	chr7	+	2059	10	FSM	ENSMUSG00000030867.8	ENSMUST00000033154.8	2199	10	142	-2	0	2	multi-exon	FALSE	canonical	3	1108	junction_2	92.3724345606776	1472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTTTCTCTTTTTGGT	NA	False	NA	58	True	ATTAAA	-16	NA	121758803	121769098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
ENSMUSG00000030867.8_121768077_121769098_1	chr7	+	802	3	ISM	ENSMUSG00000030867.8	ENSMUST00000033154.8	2199	10	9415	-2	9273	2	3prime_fragment	FALSE	canonical	3	1128	junction_1	24.5	911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTTTCTCTTTTTGGT	NA	False	NA	58	True	ATTAAA	-16	NA	121768076	121769098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_121768207_121768303_121768487_121768609
ENSMUSG00000030867.8_121768077_121769098_2	chr7	+	779	4	NNC	ENSMUSG00000030867.8	novel	2199	10	NA	NA	9273	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	543.661863865972	844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTTTCTCTTTTTGGT	NA	False	NA	58	True	ATTAAA	-16	NA	121768076	121769098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_121768207_121768303_121768487_121768609_121768895_121768917
ENSMUSG00000030868.7_121732295_121737867_1	chr7	+	695	4	ISM	ENSMUSG00000030868.7	ENSMUST00000033156.5	1532	6	31	10400	0	3510	5prime_fragment	FALSE	canonical	3	323	junction_3	14.9666295470958	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGCGTGTATTGTCACTC	NA	False	NA	NA	False	AATAAA	-15	NA	121732294	121737867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470
ENSMUSG00000030868.7_121732295_121747455_1	chr7	+	586	5	NIC	ENSMUSG00000030868.7	novel	1532	6	NA	NA	0	-349	combination_of_known_splicesites	FALSE	canonical	3	18	junction_4	141.324758977329	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGTCCTGTTTTTGACA	NA	False	NA	6	True	GATAAA	-22	NA	121732294	121747455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121747279
ENSMUSG00000030868.7_121732295_121747455_2	chr7	+	689	6	FSM	ENSMUSG00000030868.7	ENSMUST00000033156.5	1532	6	31	812	0	-349	multi-exon	FALSE	canonical	3	258	junction_5	42.3008274150755	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGTCCTGTTTTTGACA	NA	False	NA	6	True	GATAAA	-22	NA	121732294	121747455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121743007_121743111_121747279
ENSMUSG00000030868.7_121732295_121748267_1	chr7	+	1398	5	NIC	ENSMUSG00000030868.7	novel	1532	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_4	141.324758977329	734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTAGGCTCATTCATT	NA	False	NA	14	True	AATAAA	-15	NA	121732294	121748267	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121747279
ENSMUSG00000030869.12_121690056_121700929_1	chr7	-	598	5	NNC	ENSMUSG00000030869.12	novel	552	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_1	2197.68361007676	162	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTATTTTTCTCAATTAGT	6538	False	NA	-13	True	AATAAA	-14	NA	121700929	121690055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_121690291_121690808_121690909_121692839_121692928_121695831_121695955_121700877
ENSMUSG00000030869.12_121690056_121701051_1	chr7	-	594	5	NNC	ENSMUSG00000030869.12	novel	1416	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2160.03835324746	1900	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTATTTTTCTCAATTAGT	6416	False	NA	-13	True	AATAAA	-14	NA	121701051	121690055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_121690187_121690808_121690909_121692839_121692928_121695831_121695955_121700899
ENSMUSG00000030869.12_121690056_121701051_2	chr7	-	613	5	NNC	ENSMUSG00000030869.12	novel	1416	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2160.03835324746	10930	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTATTTTTCTCAATTAGT	6416	False	NA	-13	True	AATAAA	-14	NA	121701051	121690055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_121690187_121690808_121690909_121692839_121692928_121695831_121695942_121700867
ENSMUSG00000030869.12_121690056_121701051_3	chr7	-	720	5	NNC	ENSMUSG00000030869.12	novel	1416	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_1	2197.68361007676	1566	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTATTTTTCTCAATTAGT	6416	False	NA	-13	True	AATAAA	-14	NA	121701051	121690055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_121690291_121690808_121690909_121692839_121692928_121695831_121695955_121700877
ENSMUSG00000030869.12_121690056_121701051_4	chr7	-	603	5	NNC	ENSMUSG00000030869.12	novel	1416	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2160.03835324746	2617	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTATTTTTCTCAATTAGT	6416	False	NA	-13	True	AATAAA	-14	NA	121701051	121690055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_121690187_121690808_121690909_121692839_121692928_121695831_121695942_121700877
ENSMUSG00000030869.12_121690056_121701051_5	chr7	-	611	5	NNC	ENSMUSG00000030869.12	novel	1416	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2226.4758588406	10564	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTATTTTTCTCAATTAGT	6416	False	NA	-13	True	AATAAA	-14	NA	121701051	121690055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_121690187_121690808_121690909_121692839_121692928_121695836_121695955_121700877
ENSMUSG00000030872.15_121587988_121596587_1	chr7	-	1550	5	ISM	ENSMUSG00000030872.15	ENSMUST00000144779.2	2351	10	5127	0	1685	0	3prime_fragment	FALSE	canonical	3	830	junction_4	23.3920392441531	347	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCTGGTGTTGAGTCCA	NA	False	NA	-5	True	AATAAA	-14	NA	121596587	121587987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_121589025_121589646_121589758_121590716_121590887_121594066_121594225_121596513
ENSMUSG00000030876.8_120656459_120676058_1	chr7	+	870	2	ISM	ENSMUSG00000030876.8	ENSMUST00000207351.2	740	5	21625	-618	-18051	0	3prime_fragment	FALSE	canonical	3	223	junction_1	0	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCACCATGTTCTTCT	NA	False	NA	7	True	AATAAA	-16	NA	120656458	120676058	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_120656623_120675352
ENSMUSG00000030879.11_105458525_105460212_1	chr7	-	1094	3	FSM	ENSMUSG00000030879.11	ENSMUST00000124482.3	7300	3	94	6112	-6	339	multi-exon	FALSE	canonical	3	2255	junction_2	27.5	16394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTGGCTCAGTTTGCTT	NA	False	NA	-2	True	NA	NA	NA	105460212	105458524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_105459352_105459656_105459726_105460014
ENSMUSG00000030879.11_105458864_105460306_1	chr7	-	849	3	FSM	ENSMUSG00000030879.11	ENSMUST00000124482.3	7300	3	0	6451	0	0	multi-exon	FALSE	canonical	3	2255	junction_2	27.5	14086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGGATTTATGGAAAGTAA	NA	False	NA	-5	True	GATAAA	-43	NA	105460306	105458863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_105459352_105459656_105459726_105460014
ENSMUSG00000030879.11_105458887_105460212_1	chr7	-	732	3	FSM	ENSMUSG00000030879.11	ENSMUST00000124482.3	7300	3	94	6474	-6	0	multi-exon	FALSE	canonical	3	2255	junction_2	27.5	11357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATATTGACTTTCTTGTCCT	NA	False	NA	-28	True	GATAAA	-20	NA	105460212	105458886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_105459352_105459656_105459726_105460014
ENSMUSG00000030880.15_120538244_120545045_1	chr7	+	1330	7	ISM	ENSMUSG00000030880.15	ENSMUST00000207481.2	2545	20	21277	-1	4191	1	3prime_fragment	FALSE	canonical	3	284	junction_2	45.1863425777696	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGGGCAGGATTACGAAAA	NA	False	NA	14	True	AATAAA	-16	NA	120538243	120545045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_120538279_120538361_120538520_120538971_120539034_120539524_120540049_120541712_120541791_120543769_120543896_120544698
ENSMUSG00000030884.13_120234463_120258497_1	chr7	+	1575	14	NNC	ENSMUSG00000030884.13	novel	1896	14	NA	NA	0	-250	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	348.074143635312	2570	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTTCTTGCATTCTTTC	NA	False	NA	19	True	AATAAA	-15	NA	120234462	120258497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256746_120256894_120258243
ENSMUSG00000030884.13_120234463_120258497_2	chr7	+	1578	14	NNC	ENSMUSG00000030884.13	novel	1896	14	NA	NA	0	-250	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	349.349183584284	1500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTTCTTGCATTCTTTC	NA	False	NA	19	True	AATAAA	-15	NA	120234462	120258497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250159_120250417_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
ENSMUSG00000030887.5_120234463_120258497_1	chr7	-	1576	14	NNC	ENSMUSG00000030887.5	novel	2180	4	NA	NA	10976	23491	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2111	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGGGTCGGAGGACCGA	NA	False	NA	NA	False	NA	NA	NA	120258497	120234462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256888_120258243
ENSMUSG00000030887.5_120234463_120258497_2	chr7	-	1582	14	NIC	ENSMUSG00000030887.5	novel	2180	4	NA	NA	10976	23491	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3033	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGGGTCGGAGGACCGA	NA	False	NA	NA	False	NA	NA	NA	120258497	120234462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
ENSMUSG00000030888.15_105381414_105385714_1	chr7	-	2302	7	FSM	ENSMUSG00000030888.15	ENSMUST00000033179.14	3053	7	274	477	-134	197	multi-exon	FALSE	canonical	3	246	junction_4	21.202725191719	253	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTCGTTGATCTCACT	9853	False	NA	-10	True	AATAAA	-14	NA	105385714	105381413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_105382351_105382558_105382656_105382738_105382846_105382974_105383105_105383206_105383661_105383896_105384264_105385504
ENSMUSG00000030894.6_105395126_105401414_1	chr7	-	2422	13	FSM	ENSMUSG00000030894.6	ENSMUST00000033184.6	3558	13	28	1108	6	0	multi-exon	FALSE	canonical	3	275	junction_12	25.3212690571912	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTGAGTGATTTTTTTT	NA	False	NA	4	True	AATAAA	-30	NA	105401414	105395125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105400796_105400937_105401188_105401261_105401377
ENSMUSG00000030894.6_105395265_105401414_1	chr7	-	2283	13	FSM	ENSMUSG00000030894.6	ENSMUST00000033184.6	3558	13	28	1247	6	-139	multi-exon	FALSE	canonical	3	275	junction_12	25.3212690571912	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTGGCTGCAATCTATT	NA	False	NA	NA	False	NA	NA	NA	105401414	105395264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105400796_105400937_105401188_105401261_105401377
ENSMUSG00000030917.14_119701713_119720209_1	chr7	+	1347	5	FSM	ENSMUSG00000030917.14	ENSMUST00000033210.13	1484	5	137	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8.8423695919137	605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTTTTCTTTTTCTT	NA	False	NA	5	True	ATTAAA	-14	NA	119701712	119720209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_119701739_119703852_119704053_119714608_119714778_119715442_119715582_119719396
ENSMUSG00000030922.13_119495084_119515976_1	chr7	+	1093	5	FSM	ENSMUSG00000030922.13	ENSMUST00000054440.11	752	5	-21	-320	0	0	multi-exon	FALSE	canonical	3	10	junction_1	26.343879744639	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTGTTGTTTTGTTGAT	NA	False	NA	9	True	TATAAA	-20	NA	119495083	119515976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_119495114_119499333_119499532_119509026_119509186_119513395_119513489_119515363
ENSMUSG00000030934.10_132159348_132178127_1	chr7	-	2011	10	FSM	ENSMUSG00000030934.10	ENSMUST00000084500.8	2152	10	0	141	0	-141	multi-exon	FALSE	canonical	3	402	junction_6	42.9636653837854	1127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTATTTTGTATTTCCA	NA	False	NA	-19	True	AATAAA	-25	NA	132178127	132159347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_132160060_132161374_132161520_132162480_132162595_132163512_132163642_132164315_132164439_132165935_132166064_132168497_132168594_132168794_132169020_132171634_132171870_132178023
ENSMUSG00000030942.9_119315808_119320000_1	chr7	-	1176	4	FSM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	21	1492	-13	-1492	multi-exon	FALSE	canonical	3	902	junction_1	48.9239773072014	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACAGTCCCCGTTGTCA	NA	False	NA	NA	False	NA	NA	NA	119320000	119315807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_119316293_119317244_119317494_119318349_119318525_119319733
ENSMUSG00000030946.14_132212367_132308149_1	chr7	+	1521	6	NIC	ENSMUSG00000030946.14	novel	1612	7	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	2	20	junction_5	121.921942241747	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGACTCAGCCTTTCTTA	NA	False	NA	12	True	AATAAA	-20	NA	132212366	132308149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_132212560_132232210_132232399_132235729_132235884_132243252_132243317_132244215_132244309_132307320
ENSMUSG00000030960.17_132428962_132454368_1	chr7	-	1297	6	FSM	ENSMUSG00000030960.17	ENSMUST00000033257.15	1107	6	34	-224	0	224	multi-exon	FALSE	canonical	3	236	junction_3	60.7651215747982	1851	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTTAGAGATAATGTCT	NA	False	NA	-9	True	ATTAAA	-17	NA	132454368	132428961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_132429612_132433088_132433306_132438828_132438937_132452323_132452439_132453154_132453221_132454227
ENSMUSG00000030960.17_132429186_132454368_1	chr7	-	958	5	NIC	ENSMUSG00000030960.17	novel	1107	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_3	137.661496069162	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTTTTGGTTTTTGTGC	NA	False	NA	NA	False	AGTAAA	-18	NA	132454368	132429185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_132429612_132433088_132433306_132438828_132438937_132453154_132453221_132454227
ENSMUSG00000030960.17_132451230_132454345_1	chr7	-	1393	3	FSM	ENSMUSG00000030960.17	ENSMUST00000154914.2	811	3	23	-605	0	605	multi-exon	FALSE	canonical	3	351	junction_1	20.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTCTTACTGGTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	132454345	132451229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_132452439_132453154_132453221_132454227
ENSMUSG00000030978.11_102090902_102118133_1	chr7	+	3152	19	FSM	ENSMUSG00000030978.11	ENSMUST00000033283.10	3997	19	0	845	0	244	multi-exon	FALSE	canonical	3	773	junction_6	74.8152456899951	745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTACTAAACTTGT	NA	False	NA	NA	False	AATAAA	-14	NA	102090901	102118133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_102091251_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
ENSMUSG00000030978.11_102091090_102118133_1	chr7	+	2958	19	NNC	ENSMUSG00000030978.11	novel	3997	19	NA	NA	0	244	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	227.118069038883	706	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTACTAAACTTGT	NA	False	NA	NA	False	AATAAA	-14	NA	102091089	102118133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_102091251_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100265_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
ENSMUSG00000030978.11_102091090_102118133_2	chr7	+	2964	19	FSM	ENSMUSG00000030978.11	ENSMUST00000033283.10	3997	19	188	845	0	244	multi-exon	FALSE	canonical	3	773	junction_6	74.8152456899951	725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTACTAAACTTGT	NA	False	NA	NA	False	AATAAA	-14	NA	102091089	102118133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_102091251_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
ENSMUSG00000030978.11_102114962_102118133_1	chr7	+	880	3	ISM	ENSMUSG00000030978.11	ENSMUST00000033283.10	3997	19	24060	845	2033	244	3prime_fragment	FALSE	canonical	3	945	junction_2	69	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTACTAAACTTGT	7814	False	NA	NA	False	AATAAA	-14	NA	102114961	102118133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_102115021_102116084_102116274_102117501
ENSMUSG00000030980.18_118444983_118454907_1	chr7	-	1044	5	FSM	ENSMUSG00000030980.18	ENSMUST00000063607.12	4884	5	317	3523	0	-259	multi-exon	FALSE	canonical	3	187	junction_3	184.092877374438	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATTTCTTGATCAGTTG	NA	False	NA	-4	True	ATTAAA	-23	NA	118454907	118444982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_118445318_118447671_118447798_118449843_118449913_118452111_118452564_118454845
ENSMUSG00000030980.18_118452341_118454907_1	chr7	-	285	2	ISM	ENSMUSG00000030980.18	ENSMUST00000126792.9	3253	4	308	9328	0	-355	5prime_fragment	FALSE	canonical	3	591	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAGAAAGAAGAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	118454907	118452340	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_118452564_118454845
ENSMUSG00000030982.20_118339970_118361369_1	chr7	+	1117	9	NIC	ENSMUSG00000030982.20	novel	1102	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_8	189.52226122543	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTGCAAAATTTAATTGAA	NA	False	NA	NA	False	NA	NA	NA	118339969	118361369	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118360988
ENSMUSG00000030982.20_118339970_118440712_1	chr7	+	3099	31	FSM	ENSMUSG00000030982.20	ENSMUST00000059390.13	5097	31	521	1477	0	0	multi-exon	TRUE	canonical	3	302	junction_1	75.0223744403406	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCAGTGTCTCGGTGTGTG	NA	False	NA	10	True	ATTAAA	-21	NA	118339969	118440712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587_118365648_118372243_118372341_118373222_118373271_118374514_118374609_118378910_118378989_118379399_118379523_118389232_118389280_118390590_118390703_118391784_118391902_118393764_118393819_118396188_118396270_118399660_118399724_118400483_118400570_118403326_118403408_118406213_118406278_118409100_118409200_118411027_118411106_118412752_118412868_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418
ENSMUSG00000030982.20_118417536_118440712_1	chr7	+	1024	6	NNC	ENSMUSG00000030982.20	novel	5097	31	NA	NA	-3310	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_1	229.732888372562	71	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCAGTGTCTCGGTGTGTG	NA	False	NA	10	True	ATTAAA	-21	NA	118417535	118440712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_118417694_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418
ENSMUSG00000030983.5_133311131_133322874_1	chr7	+	1175	7	FSM	ENSMUSG00000030983.5	ENSMUST00000033282.5	1244	7	69	0	0	0	multi-exon	FALSE	canonical	3	1578	junction_1	47.9215214931895	2070	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGAAGTGTTCATGTCC	1376	False	NA	23	True	AATAAA	-24	NA	133311130	133322874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_133311258_133315916_133315992_133316627_133316709_133318589_133318680_133319327_133319516_133320832_133321008_133322435
ENSMUSG00000030986.14_133311077_133322874_1	chr7	-	1220	7	NNC	ENSMUSG00000030986.14	novel	2233	11	NA	NA	9755	11594	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6936	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGCGCCTGCGCGAGTC	5953	False	NA	NA	False	NA	NA	NA	133322874	133311076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_133311258_133315916_133315992_133316627_133316700_133318589_133318680_133319327_133319516_133320832_133321008_133322435
ENSMUSG00000030986.14_133311077_133322874_2	chr7	-	1222	7	NNC	ENSMUSG00000030986.14	novel	2233	11	NA	NA	9755	11594	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6563	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGCGCCTGCGCGAGTC	5953	False	NA	NA	False	NA	NA	NA	133322874	133311076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_133311258_133315916_133315992_133316627_133316709_133318596_133318680_133319327_133319516_133320832_133321008_133322435
ENSMUSG00000030986.14_133311077_133322874_3	chr7	-	1220	7	NNC	ENSMUSG00000030986.14	novel	2233	11	NA	NA	9755	11594	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4777	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGCGCCTGCGCGAGTC	5953	False	NA	NA	False	NA	NA	NA	133322874	133311076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_133311249_133315916_133315992_133316627_133316709_133318589_133318680_133319327_133319516_133320832_133321008_133322435
ENSMUSG00000030986.14_133311077_133322874_4	chr7	-	1220	7	NNC	ENSMUSG00000030986.14	novel	2233	11	NA	NA	9755	11594	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7543	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGCGCCTGCGCGAGTC	5953	False	NA	NA	False	NA	NA	NA	133322874	133311076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_133311258_133315916_133315992_133316627_133316709_133318589_133318680_133319336_133319516_133320832_133321008_133322435
ENSMUSG00000030986.14_133311077_133322874_5	chr7	-	1336	7	NNC	ENSMUSG00000030986.14	novel	2233	11	NA	NA	9755	11594	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGCGCCTGCGCGAGTC	5953	False	NA	NA	False	NA	NA	NA	133322874	133311076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_133311258_133315916_133315992_133316627_133316709_133318482_133318680_133319327_133319516_133320832_133321008_133322435
ENSMUSG00000030990.19_101872279_101887774_1	chr7	+	2002	7	FSM	ENSMUSG00000030990.19	ENSMUST00000033292.14	1201	7	3	-804	0	0	multi-exon	FALSE	canonical	3	107	junction_5	27.0657635317306	631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	638	False	NA	16	True	AATAAA	-23	NA	101872278	101887774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
ENSMUSG00000030990.19_101872279_101887774_2	chr7	+	1890	6	NIC	ENSMUSG00000030990.19	novel	2034	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	55.9692772867401	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	638	False	NA	16	True	AATAAA	-23	NA	101872278	101887774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_101872358_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
ENSMUSG00000031007.3_12454040_12482983_1	chrX	+	2019	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	0	305	0	-305	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	5108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCACTGCAATTCTG	NA	False	NA	32	True	AATAAA	-16	NA	12454039	12482983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
ENSMUSG00000031007.3_12454040_12483048_1	chrX	+	2084	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	0	240	0	-240	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	5266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTGGCTGGTTTATTATA	NA	False	NA	97	True	ATTAAA	-19	NA	12454039	12483048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
ENSMUSG00000031021.14_109335041_109351351_1	chr7	-	1568	5	FSM	ENSMUSG00000031021.14	ENSMUST00000033333.13	1703	5	135	0	102	0	multi-exon	FALSE	canonical	3	85	junction_4	15.7698287879102	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGTTTCTGTTCTCCAG	NA	False	NA	2	True	AATAAA	-19	NA	109351351	109335040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_109336199_109342753_109342889_109344516_109344626_109349219_109349312_109351277
ENSMUSG00000031021.14_109335771_109351486_1	chr7	-	973	5	FSM	ENSMUSG00000031021.14	ENSMUST00000033333.13	1703	5	0	730	0	-728	multi-exon	FALSE	canonical	3	85	junction_4	15.7698287879102	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCGTGCCTGGAACAAGC	NA	False	NA	NA	False	AATAAA	-28	NA	109351486	109335770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_109336199_109342753_109342889_109344516_109344626_109349219_109349312_109351277
ENSMUSG00000031022.16_109302959_109311396_2	chr7	-	997	5	NNC	ENSMUSG00000031022.16	novel	1957	6	NA	NA	8827	8429	intron_retention	TRUE	non_canonical	0	0	junction_1	0	320	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATAGCGCTCACACGGACA	NA	False	NA	NA	False	NA	NA	NA	109311396	109302958	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_109303240_109304157_109304239_109306604_109306719_109308147_109308229_109310956
ENSMUSG00000031022.16_109302959_109311396_3	chr7	-	898	5	NNC	ENSMUSG00000031022.16	novel	1957	6	NA	NA	8827	8429	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	149	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATAGCGCTCACACGGACA	NA	False	NA	NA	False	NA	NA	NA	109311396	109302958	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_109303141_109304157_109304239_109306604_109306719_109308147_109308229_109310956
ENSMUSG00000031022.16_109302959_109311396_4	chr7	-	1130	5	NNC	ENSMUSG00000031022.16	novel	1957	6	NA	NA	8827	8429	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2104	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATAGCGCTCACACGGACA	NA	False	NA	NA	False	NA	NA	NA	109311396	109302958	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_109303378_109304157_109304234_109306604_109306719_109308147_109308229_109310956
ENSMUSG00000031023.6_109302959_109311175_1	chr7	+	1092	5	NNC	ENSMUSG00000031023.6	novel	1028	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	9	junction_1	171.1906831577	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGCATCAATCTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	109302958	109311175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_109303556_109304157_109304239_109306604_109306719_109308147_109308229_109310956
ENSMUSG00000031023.6_109302959_109311175_2	chr7	+	745	6	FSM	ENSMUSG00000031023.6	ENSMUST00000033335.6	1028	6	62	221	0	0	multi-exon	FALSE	canonical	3	170	junction_1	91.1249691357972	1049	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGCATCAATCTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	109302958	109311175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_109302984_109303152_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
ENSMUSG00000031023.6_109302959_109311175_3	chr7	+	914	5	NIC	ENSMUSG00000031023.6	novel	1028	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	347	junction_1	28.0624304008046	1487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGCATCAATCTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	109302958	109311175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
ENSMUSG00000031023.6_109302959_109311396_1	chr7	+	1135	5	NIC	ENSMUSG00000031023.6	novel	1028	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	347	junction_1	28.0624304008046	2887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTTTATTGCTATTAAA	NA	False	NA	NA	False	AATAAA	-25	NA	109302958	109311396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
ENSMUSG00000031024.14_109156279_109302812_1	chr7	-	653	4	NIC	ENSMUSG00000031024.14	novel	553	4	NA	NA	0	109	combination_of_known_junctions	FALSE	canonical	3	65	junction_3	69.5237769080158	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCCTGGGTATCCGAGAGA	NA	False	NA	NA	False	NA	NA	NA	109302812	109156278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_109156669_109169213_109169319_109216264_109216355_109302744
ENSMUSG00000031027.16_108878430_108986772_1	chr7	-	1707	11	NNC	ENSMUSG00000031027.16	novel	2295	13	NA	NA	51252	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_10	9.45568612000208	208	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCAGTCCCTCACGTGT	NA	False	NA	-14	True	AATAAA	-26	NA	108986772	108878429	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108986659
ENSMUSG00000031029.7_108533624_108540898_1	chr7	+	320	2	NNC	ENSMUSG00000031029.7	novel	2514	8	NA	NA	0	683	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	162	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATCTGATGCGAGTTTA	NA	False	NA	NA	False	AATAAA	-25	NA	108533623	108540898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_108533734_108540688
ENSMUSG00000031059.10_20481565_20483514_1	chrX	-	564	3	FSM	ENSMUSG00000031059.10	ENSMUST00000116621.2	908	3	344	0	344	0	multi-exon	FALSE	canonical	3	2198	junction_1	70	18647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGTTACTGCTGCTTT	NA	False	NA	-4	True	ATTAAA	-14	NA	20483514	20481564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_20481782_20481952_20482084_20483298
ENSMUSG00000031060.17_20484022_20517128_1	chrX	+	3391	24	FSM	ENSMUSG00000031060.17	ENSMUST00000115374.8	3564	24	161	12	0	1	multi-exon	TRUE	canonical	3	108	junction_4	93.2983708932913	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCATTTCTACTTTCTC	555	False	NA	29	True	AATAAA	-17	NA	20484021	20517128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
ENSMUSG00000031060.17_20514606_20517128_1	chrX	+	1103	8	ISM	ENSMUSG00000031060.17	ENSMUST00000082089.14	2562	22	28269	-205	28269	1	3prime_fragment	FALSE	canonical	3	371	junction_1	37.6742211435819	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCATTTCTACTTTCTC	NA	False	NA	29	True	AATAAA	-17	NA	20514605	20517128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
ENSMUSG00000031065.15_20559616_20565125_1	chrX	+	1684	15	ISM	ENSMUSG00000031065.15	ENSMUST00000033380.7	3120	16	4959	994	-906	-913	3prime_fragment	FALSE	canonical	3	1538	junction_14	86.1898710844321	114	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCTTGATGTGTCTGTC	2052	False	NA	14	True	NA	NA	NA	20559615	20565125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_20559771_20560276_20560411_20560509_20560636_20560727_20560785_20560870_20560986_20561748_20561844_20561937_20562001_20562256_20562381_20562585_20562707_20562786_20562885_20562969_20563076_20563160_20563204_20563358_20563450_20564689_20564768_20564847
ENSMUSG00000031065.15_20559616_20566119_1	chrX	+	2678	15	ISM	ENSMUSG00000031065.15	ENSMUST00000033380.7	3120	16	4959	0	-906	0	3prime_fragment	FALSE	canonical	3	1538	junction_14	86.1898710844321	242	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTGGTTATAAATCATCAA	2052	False	NA	18	True	ATTAAA	-20	NA	20559615	20566119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_20559771_20560276_20560411_20560509_20560636_20560727_20560785_20560870_20560986_20561748_20561844_20561937_20562001_20562256_20562381_20562585_20562707_20562786_20562885_20562969_20563076_20563160_20563204_20563358_20563450_20564689_20564768_20564847
ENSMUSG00000031066.11_20570173_20586530_1	chrX	+	3191	21	FSM	ENSMUSG00000031066.11	ENSMUST00000033383.3	3467	21	28	248	0	-246	multi-exon	FALSE	canonical	3	183	junction_13	34.5694590643244	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGTGGCTTTGTTTCTTC	NA	False	NA	9	True	CATAAA	-24	NA	20570172	20586530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_20570359_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20583993_20584044_20584232_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
ENSMUSG00000031068.9_137039343_137069916_1	chr7	+	1280	10	NNC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	0	-407	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1144.2878857316	7992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	34	True	AATAAA	-22	NA	137039342	137069916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064785_137066143_137066237_137069661
ENSMUSG00000031068.9_137039384_137069916_1	chr7	+	1142	11	NNC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	0	-407	at_least_one_novel_splicesite	FALSE	canonical	3	234	junction_3	1056.66335225558	853	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	34	True	AATAAA	-22	NA	137039383	137069916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_137039501_137046707_137046817_137054425_137054501_137055236_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
ENSMUSG00000031068.9_137039384_137069916_2	chr7	+	1226	10	NNC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	0	-407	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	1150.78350121414	2410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	34	True	AATAAA	-22	NA	137039383	137069916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063175_137065826_137065867_137066143_137066237_137069661
ENSMUSG00000031068.9_137039384_137069916_3	chr7	+	1162	10	NIC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	0	-407	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	1172.17017262011	894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	34	True	AATAAA	-22	NA	137039383	137069916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_137039501_137046707_137046817_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
ENSMUSG00000031068.9_137039384_137069916_4	chr7	+	1227	11	NNC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	0	-407	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_10	1118.42308631394	23987	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	34	True	AATAAA	-22	NA	137039383	137069916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069671
ENSMUSG00000031068.9_137039384_137069916_5	chr7	+	1227	11	NNC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	0	-407	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1125.29258417533	21085	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	34	True	AATAAA	-22	NA	137039383	137069916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_137039501_137046707_137046817_137054425_137054491_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
ENSMUSG00000031068.9_137039384_137069916_6	chr7	+	851	8	NIC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	0	-407	combination_of_known_splicesites	FALSE	canonical	2	11	junction_1	1304.68336920402	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	34	True	AATAAA	-22	NA	137039383	137069916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_137039501_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
ENSMUSG00000031068.9_137039384_137069916_7	chr7	+	1165	11	NNC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	0	-407	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_4	1110.36804709069	847	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	34	True	AATAAA	-22	NA	137039383	137069916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060923_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
ENSMUSG00000031068.9_137039384_137069916_8	chr7	+	1231	12	NNC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	0	-407	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_3	1597.98519837165	794	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	34	True	AATAAA	-22	NA	137039383	137069916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_137039501_137046707_137046817_137054181_137054271_137054425_137054501_137055236_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
ENSMUSG00000031068.9_137039384_137069916_9	chr7	+	1288	12	NNC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	0	-407	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_4	1395.61737871402	25744	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	34	True	AATAAA	-22	NA	137039383	137069916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060571_137060623_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
ENSMUSG00000031068.9_137039651_137069919_1	chr7	+	1405	11	NNC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	233	-404	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	1111.5858221478	1354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGTGTAGAATGTCTCTG	NA	False	NA	37	True	AATAAA	-25	NA	137039650	137069919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_137039933_137046707_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
ENSMUSG00000031068.9_137039821_137069916_1	chr7	+	1232	11	NNC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	403	-407	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	1111.5858221478	1325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	34	True	AATAAA	-22	NA	137039820	137069916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_137039933_137046707_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
ENSMUSG00000031074.15_144392332_144397083_1	chr7	+	1209	3	FSM	ENSMUSG00000031074.15	ENSMUST00000105898.2	2299	3	0	1090	0	627	multi-exon	FALSE	canonical	3	54	junction_2	3.5	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTGGGATACAGACTTAG	NA	False	NA	11	True	ATTAAA	-26	NA	144392331	144397083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_144392665_144394407_144394512_144396311
ENSMUSG00000031077.8_144133429_144136200_1	chr7	-	1529	2	FSM	ENSMUSG00000031077.8	ENSMUST00000033394.8	3903	2	0	2374	0	-2374	multi-exon	FALSE	canonical	3	26	junction_1	0	183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGGCTGGGTGTGATAA	NA	False	NA	-5	True	AATAAA	-21	NA	144136200	144133428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_144134598_144135840
ENSMUSG00000031078.16_143989472_144024482_2	chr7	-	3022	18	FSM	ENSMUSG00000031078.16	ENSMUST00000103079.4	3286	18	264	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	258.149054338875	903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGTGTGATCTTCTGC	NA	False	NA	-20	True	AATAAA	-14	NA	144024482	143989471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144004714_144004826_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
ENSMUSG00000031090.15_143349587_143376566_1	chr7	-	2363	21	FSM	ENSMUSG00000031090.15	ENSMUST00000033415.15	2641	21	12	266	-11	0	multi-exon	FALSE	canonical	3	51	junction_5	7.20416546173115	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTCTTTTTAAAGTGT	NA	False	NA	-16	True	TATAAA	-4	NA	143376566	143349586	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_143349794_143351561_143351739_143352191_143352321_143352777_143352848_143353527_143353660_143356932_143357040_143357750_143357887_143359651_143359821_143360616_143360720_143361123_143361173_143361721_143361847_143362528_143362604_143364905_143365038_143366226_143366345_143366499_143366589_143367126_143367179_143369322_143369413_143369910_143369965_143372829_143372947_143374908_143374970_143376395
ENSMUSG00000031093.15_35323224_35340217_1	chrX	+	1469	8	ISM	ENSMUSG00000031093.15	ENSMUST00000115266.8	6047	49	112174	-8	18333	2	3prime_fragment	FALSE	canonical	1	53	junction_7	41.1572395496459	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCGAAGTGAAGGAAATAAT	NA	False	NA	10	True	AATAAA	-22	NA	35323223	35340217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_35323324_35324846_35324961_35325933_35326081_35330522_35330734_35331312_35331504_35331982_35332084_35333500_35333640_35339751
ENSMUSG00000031095.16_37622451_37665073_1	chrX	-	3044	23	FSM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	0	300	0	0	multi-exon	FALSE	non_canonical	3	600	junction_22	211.248653964121	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATGTTATTTGACTTCT	NA	False	NA	-5	True	GATAAA	-14	NA	37665073	37622450	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37665015
ENSMUSG00000031095.16_37660667_37665073_1	chrX	-	747	2	ISM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	0	38516	0	-38216	5prime_fragment	FALSE	canonical	3	600	junction_1	0	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCTCAGCATGCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	37665073	37660666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_37661356_37665015
ENSMUSG00000031095.16_37660667_37665073_2	chrX	-	806	2	ISM	ENSMUSG00000031095.16	ENSMUST00000050083.6	3090	23	-13	38216	0	-38216	5prime_fragment	FALSE	canonical	3	112	junction_1	0	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCTCAGCATGCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	37665073	37660666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_37661356_37664956
ENSMUSG00000031104.3_47608343_47619110_1	chrX	+	978	2	FSM	ENSMUSG00000031104.3	ENSMUST00000033430.3	1158	2	181	-1	181	1	multi-exon	FALSE	canonical	3	18	junction_1	0	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACGTGGCTTTGTGTCTTG	NA	False	NA	7	True	AATAAA	-15	NA	47608342	47619110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_47608736_47618525
ENSMUSG00000031105.17_47712290_47751171_1	chrX	+	1524	11	NIC	ENSMUSG00000031105.17	novel	1760	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	33.2180673730426	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	14	True	ATTAAA	-17	NA	47712289	47751171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_47712386_47712550_47712706_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
ENSMUSG00000031105.17_47740806_47751171_1	chrX	+	755	4	ISM	ENSMUSG00000031105.17	ENSMUST00000177710.2	1516	10	27967	-2	27967	0	3prime_fragment	FALSE	canonical	3	86	junction_1	6.84754619472471	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	14	True	ATTAAA	-17	NA	47740805	47751171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_47740932_47742243_47742380_47749565_47749647_47750759
ENSMUSG00000031107.7_47783881_47797950_1	chrX	+	599	5	ISM	ENSMUSG00000031107.7	ENSMUST00000033433.3	1747	6	0	1650	0	7	5prime_fragment	FALSE	canonical	3	254	junction_1	56.9753236059261	917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGCATATTAAAACTCAGG	NA	False	NA	2	True	AAAAAG	-11	NA	47783880	47797950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_47783998_47784196_47784313_47786277_47786330_47795181_47795312_47797766
ENSMUSG00000031107.7_47783881_47799600_1	chrX	+	1738	6	NNC	ENSMUSG00000031107.7	novel	1747	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	149.080381003001	2182	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGGCATTTGGTCCACTCA	NA	False	NA	NA	False	NA	NA	NA	47783880	47799600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_47783998_47784196_47784313_47786277_47786330_47795181_47795312_47797766_47797951_47798461
ENSMUSG00000031107.7_47784197_47799600_1	chrX	+	1630	5	ISM	ENSMUSG00000031107.7	ENSMUST00000033433.3	1747	6	316	0	316	0	3prime_fragment	FALSE	canonical	3	347	junction_4	19.8053023203384	1738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGGCATTTGGTCCACTCA	NA	False	NA	NA	False	NA	NA	NA	47784196	47799600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_47784313_47786277_47786330_47795181_47795312_47797766_47797951_47798452
ENSMUSG00000031109.17_48169580_48377089_1	chrX	-	365	4	ISM	ENSMUSG00000031109.17	ENSMUST00000137518.8	968	6	0	15263	0	-10948	5prime_fragment	FALSE	canonical	3	33	junction_2	9.56846672960488	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTCTGATCCAGCTGCAT	NA	False	NA	NA	False	NA	NA	NA	48377089	48169579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_48169629_48257517_48257662_48375721_48375782_48376977
ENSMUSG00000031112.11_49930318_49981975_1	chrX	+	3246	12	FSM	ENSMUSG00000031112.11	ENSMUST00000033444.11	3639	12	394	-1	0	1	multi-exon	TRUE	canonical	3	20	junction_11	5.29618605950164	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCCTCGATGTTTGTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	49930317	49981975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_49930424_49930555_49930713_49959132_49959364_49968365_49968423_49974465_49974575_49974663_49974822_49975527_49975714_49976737_49976887_49977892_49977987_49978565_49978629_49978709_49978847_49980176
ENSMUSG00000031118.9_51057572_51061662_1	chrX	-	1512	5	NIC	ENSMUSG00000031118.9	novel	1454	4	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_3	35.6195171219375	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGTTGCTCCGTTTCA	NA	False	NA	-2	True	CATAAA	-17	NA	51061662	51057571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_51058747_51059091_51059163_51059359_51059477_51059858_51059953_51061607
ENSMUSG00000031125.3_55181932_55198652_2	chrX	+	816	8	FSM	ENSMUSG00000031125.3	ENSMUST00000033458.3	1022	8	0	206	0	-206	multi-exon	FALSE	canonical	3	19	junction_1	16.2819544532076	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTTTGAAAGGCTCTTT	NA	False	NA	NA	False	AATAAA	-32	NA	55181931	55198652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_55181986_55183330_55183457_55183770_55183835_55184104_55184140_55192435_55192554_55193247_55193348_55198014_55198114_55198432
ENSMUSG00000031125.3_55181932_55198858_1	chrX	+	1030	8	NNC	ENSMUSG00000031125.3	novel	1022	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	20.9108896540164	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTGGCAAATAGTCCTT	NA	False	NA	NA	False	AATAAA	-15	NA	55181931	55198858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_55181994_55183330_55183457_55183770_55183835_55184104_55184140_55192435_55192554_55193247_55193348_55198014_55198114_55198432
ENSMUSG00000031134.17_56428708_56438341_1	chrX	-	2321	10	FSM	ENSMUSG00000031134.17	ENSMUST00000140384.8	2139	10	0	-182	0	182	multi-exon	FALSE	canonical	3	61	junction_8	6.66296193358442	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGGTGTTGGGTTCTTT	NA	False	NA	-5	True	AATAAA	-16	NA	56438341	56428707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_56429922_56430492_56430582_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437059_56438211
ENSMUSG00000031137.18_58107505_58112860_1	chrX	-	1591	3	NNC	ENSMUSG00000031137.18	novel	2499	5	NA	NA	65662	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	38.5	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACTTCAATGTGTGTT	NA	False	NA	NA	False	AATAAA	-25	NA	58112860	58107504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_58108169_58108202_58109030_58112760
ENSMUSG00000031137.18_58107505_58112860_2	chrX	-	1603	3	NNC	ENSMUSG00000031137.18	novel	2499	5	NA	NA	65662	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	38.5	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACTTCAATGTGTGTT	NA	False	NA	NA	False	AATAAA	-25	NA	58112860	58107504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_58108181_58108202_58109030_58112760
ENSMUSG00000031137.18_58107505_58112860_3	chrX	-	1625	2	ISM	ENSMUSG00000031137.18	ENSMUST00000033473.12	2499	5	66936	0	65662	0	3prime_fragment	FALSE	canonical	3	77	junction_1	0	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACTTCAATGTGTGTT	NA	False	NA	NA	False	AATAAA	-25	NA	58112860	58107504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_58109030_58112760
ENSMUSG00000031139.17_59175514_59223621_1	chrX	-	779	8	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	828	-74195	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_7	118.163152514838	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGAAAAGTTCTGCTCAT	NA	False	NA	NA	False	NA	NA	NA	59223621	59175513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
ENSMUSG00000031143.5_7460049_7471628_1	chrX	-	2224	17	FSM	ENSMUSG00000031143.5	ENSMUST00000033483.5	2353	17	128	1	128	0	multi-exon	FALSE	canonical	3	186	junction_12	25.3807721267498	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCACGCTTAGGCATGGAT	NA	False	NA	-10	True	AATAAA	-18	NA	7471628	7460048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_7460407_7460768_7460844_7460922_7460983_7461198_7461295_7461534_7461643_7461724_7461827_7461943_7462061_7462141_7462262_7462732_7462853_7462969_7463033_7463776_7463972_7465396_7465576_7465672_7465740_7465867_7465975_7466859_7466993_7470398_7470577_7471482
ENSMUSG00000031145.16_7534180_7537570_1	chrX	+	1098	5	NIC	ENSMUSG00000031145.16	novel	2487	6	NA	NA	1843	3145	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	19176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCGGGAAGGGGGCCCCCC	NA	False	NA	NA	False	NA	NA	NA	7534179	7537570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537381
ENSMUSG00000031146.7_7534180_7537249_1	chrX	-	993	5	NNC	ENSMUSG00000031146.7	novel	1157	5	NA	NA	303	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_4	953.098630782775	2209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAAGTTAACTTTTTTT	NA	False	NA	NA	False	AATAAA	-28	NA	7537249	7534179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537165
ENSMUSG00000031146.7_7534180_7537570_1	chrX	-	1034	5	NNC	ENSMUSG00000031146.7	novel	1157	5	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	950.813960509626	2202	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAAGTTAACTTTTTTT	NA	False	NA	NA	False	AATAAA	-28	NA	7537570	7534179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_7534746_7535165_7535257_7535653_7535686_7535841_7535998_7537381
ENSMUSG00000031146.7_7534180_7537570_2	chrX	-	1128	5	NNC	ENSMUSG00000031146.7	novel	1157	5	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	950.813960509626	16016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAAGTTAACTTTTTTT	NA	False	NA	NA	False	AATAAA	-28	NA	7537570	7534179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_7534746_7535165_7535257_7535653_7535780_7535841_7535998_7537381
ENSMUSG00000031146.7_7534180_7537629_1	chrX	-	1144	5	NNC	ENSMUSG00000031146.7	novel	1157	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	960.865625360799	15421	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAAGTTAACTTTTTTT	NA	False	NA	NA	False	AATAAA	-28	NA	7537629	7534179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537394
ENSMUSG00000031149.8_7594810_7597303_1	chrX	+	1541	2	ISM	ENSMUSG00000031149.8	ENSMUST00000033489.8	1339	3	132	0	132	0	intron_retention	FALSE	canonical	3	906	junction_1	0	867	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCCTCCTGTGTGAAG	1302	False	NA	7	True	AATAAA	-20	NA	7594809	7597303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_7595002_7595954
ENSMUSG00000031149.8_7594810_7597303_2	chrX	+	1207	3	FSM	ENSMUSG00000031149.8	ENSMUST00000033489.8	1339	3	132	0	132	0	multi-exon	FALSE	canonical	3	755	junction_2	75.5	1082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCCTCCTGTGTGAAG	1302	False	NA	7	True	AATAAA	-20	NA	7594809	7597303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7595002_7595954_7596173_7596506
ENSMUSG00000031155.18_7744541_7748034_1	chrX	+	964	4	ISM	ENSMUSG00000031155.18	ENSMUST00000033495.15	2045	6	0	1637	0	393	5prime_fragment	FALSE	canonical	3	74	junction_3	6.34209919681348	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGGGCTCTTATTTTA	NA	False	NA	NA	False	AATAAA	-23	NA	7744540	7748034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_7744796_7744922_7745033_7745866_7745918_7747486
ENSMUSG00000031156.19_7750572_7760266_1	chrX	+	2324	4	FSM	ENSMUSG00000031156.19	ENSMUST00000115660.12	3094	4	305	465	0	0	multi-exon	FALSE	canonical	3	84	junction_1	9.0921211313239	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATGTGTAGCTTTCTGA	NA	False	NA	6	True	AATAAA	-18	NA	7750571	7760266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7758378
ENSMUSG00000031157.11_7760758_7765135_1	chrX	-	1120	7	NIC	ENSMUSG00000031157.11	novel	1104	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_6	180.072824774373	3164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGGCTTGAGTGCTTC	669	False	NA	-1	True	AATAAA	-22	NA	7765135	7760757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765018
ENSMUSG00000031157.11_7760758_7765218_1	chrX	-	1017	7	FSM	ENSMUSG00000031157.11	ENSMUST00000156741.8	763	7	21	-275	0	0	multi-exon	FALSE	canonical	3	64	junction_6	182.287014226345	2463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGGCTTGAGTGCTTC	586	False	NA	-1	True	AATAAA	-22	NA	7765218	7760757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765204
ENSMUSG00000031158.12_7765596_7773106_1	chrX	+	897	6	FSM	ENSMUSG00000031158.12	ENSMUST00000033498.10	2381	6	0	1484	0	-103	multi-exon	FALSE	canonical	3	843	junction_3	44.2511016812011	10333	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGTCTGCCTTCAGT	1189	False	NA	31	True	TTTAAA	-18	NA	7765595	7773106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7765709_7767199_7767300_7769911_7769976_7772309_7772439_7772519_7772631_7772726
ENSMUSG00000031163.3_7870439_7872252_1	chrX	-	614	2	ISM	ENSMUSG00000031163.3	ENSMUST00000033503.3	673	4	12479	0	12479	0	3prime_fragment	FALSE	canonical	3	46	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCACTCTTGGCAGAG	NA	False	NA	-9	True	AATAAA	-21	NA	7872252	7870438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_7870742_7871941
ENSMUSG00000031163.3_7870439_7881863_1	chrX	-	749	4	NNC	ENSMUSG00000031163.3	novel	673	4	NA	NA	2868	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_3	9.28559218478941	99	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCACTCTTGGCAGAG	NA	False	NA	-9	True	AATAAA	-21	NA	7881863	7870438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_7870742_7871941_7872098_7881456_7881595_7881711
ENSMUSG00000031163.3_7870439_7882073_1	chrX	-	959	4	NNC	ENSMUSG00000031163.3	novel	673	4	NA	NA	2658	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_3	9.28559218478941	221	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCACTCTTGGCAGAG	NA	False	NA	-9	True	AATAAA	-21	NA	7882073	7870438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_7870742_7871941_7872098_7881456_7881595_7881711
ENSMUSG00000031163.3_7870439_7882073_3	chrX	-	978	4	NNC	ENSMUSG00000031163.3	novel	673	4	NA	NA	2658	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	19.4821855949366	165	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCACTCTTGGCAGAG	NA	False	NA	-9	True	AATAAA	-21	NA	7882073	7870438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_7870742_7871941_7872098_7881456_7881548_7881645
ENSMUSG00000031167.17_8008598_8010111_1	chrX	-	795	4	ISM	ENSMUSG00000031167.17	ENSMUST00000115621.9	1338	7	2008	0	-954	0	3prime_fragment	FALSE	canonical	3	764	junction_2	241.173519828912	994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATAATGCTTTTTCCT	8386	False	NA	-7	True	ATTAAA	-25	NA	8010111	8008597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_8009195_8009489_8009569_8009896_8009991_8010086
ENSMUSG00000031167.17_8008598_8011311_1	chrX	-	1099	6	ISM	ENSMUSG00000031167.17	ENSMUST00000115615.9	1183	7	651	-2	607	0	3prime_fragment	FALSE	canonical	3	391	junction_1	315.842365745952	1097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATAATGCTTTTTCCT	7186	False	NA	-7	True	ATTAAA	-25	NA	8011311	8008597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_8009195_8009485_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193
ENSMUSG00000031167.17_8008711_8011936_1	chrX	-	1046	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115615.9	1183	7	26	111	0	0	multi-exon	FALSE	canonical	3	391	junction_1	305.254766092558	980	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGTGAATGTCATTTT	6561	False	NA	NA	False	ATTAAA	-38	NA	8011936	8008710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_8009195_8009485_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUSG00000031168.15_8051570_8059137_1	chrX	-	1235	4	NIC	ENSMUSG00000031168.15	novel	1743	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	780	junction_2	7.25718035235908	9306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGAGAGATATTTAATTA	NA	False	NA	-5	True	AATAAA	-17	NA	8059137	8051569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_8052073_8052882_8053159_8056317_8056676_8059039
ENSMUSG00000031168.15_8051570_8059137_2	chrX	-	1127	5	FSM	ENSMUSG00000031168.15	ENSMUST00000033509.15	1743	5	614	2	0	0	multi-exon	FALSE	canonical	3	751	junction_2	18.0190871022924	9506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGAGAGATATTTAATTA	NA	False	NA	-5	True	AATAAA	-17	NA	8059137	8051569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_8052073_8052882_8053014_8053121_8053159_8056317_8056676_8059039
ENSMUSG00000031168.15_8051570_8059137_3	chrX	-	1122	5	NNC	ENSMUSG00000031168.15	novel	1743	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	335.784901387778	9359	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGAGAGATATTTAATTA	NA	False	NA	-5	True	AATAAA	-17	NA	8059137	8051569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_8052068_8052882_8053014_8053121_8053159_8056317_8056676_8059039
ENSMUSG00000031171.12_8106659_8118609_1	chrX	-	1637	13	FSM	ENSMUSG00000031171.12	ENSMUST00000033513.10	3425	13	36	1752	-7	0	multi-exon	FALSE	canonical	3	43	junction_4	72.5114933418604	668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGCACGTTGCTTACTT	NA	False	NA	-14	True	AATAAA	-21	NA	8118609	8106658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_8107070_8111298_8111341_8111522_8111712_8111790_8111895_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
ENSMUSG00000031171.12_8106659_8118609_2	chrX	-	1626	13	NNC	ENSMUSG00000031171.12	novel	1656	13	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	82.6271326838561	665	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGCACGTTGCTTACTT	NA	False	NA	-14	True	AATAAA	-21	NA	8118609	8106658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_8107070_8111298_8111341_8111522_8111712_8111790_8111889_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117272_8118410
ENSMUSG00000031174.18_10024455_10082972_1	chrX	-	2109	13	NIC	ENSMUSG00000031174.18	novel	2926	17	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_6	32.0350285711681	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGCTTGGAAGTATTT	NA	False	NA	0	True	AATAAA	-32	NA	10082972	10024454	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
ENSMUSG00000031174.18_10024455_10082972_2	chrX	-	2739	17	FSM	ENSMUSG00000031174.18	ENSMUST00000073392.11	2926	17	187	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	17.609368067878	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGCTTGGAAGTATTT	NA	False	NA	0	True	AATAAA	-32	NA	10082972	10024454	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
ENSMUSG00000031174.18_10062010_10082972_1	chrX	-	1597	10	ISM	ENSMUSG00000031174.18	ENSMUST00000155734.8	2672	12	25	14803	0	11230	5prime_fragment	FALSE	canonical	3	91	junction_1	9.6148034012373	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGATAGCCTTTGTTTA	NA	False	NA	NA	False	ATTAAA	-16	NA	10082972	10062009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
ENSMUSG00000031197.12_74557923_74577600_1	chrX	+	629	6	FSM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	18	948	0	-948	multi-exon	FALSE	canonical	3	1794	junction_5	66.7580706731403	658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGATTCAGGTTTTCAAAC	NA	False	NA	NA	False	AATAAA	-23	NA	74557922	74577600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
ENSMUSG00000031197.12_74557923_74578336_1	chrX	+	1365	6	FSM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	18	212	0	-212	multi-exon	FALSE	canonical	3	1794	junction_5	66.7580706731403	2171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTAAGCTTTTTTATT	NA	False	NA	NA	False	TATAAA	-18	NA	74557922	74578336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
ENSMUSG00000031198.5_74426028_74438360_1	chrX	+	834	5	FSM	ENSMUSG00000031198.5	ENSMUST00000033541.5	2562	5	23	1705	0	426	multi-exon	FALSE	canonical	3	165	junction_1	30.589009464185	3462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTATCTTGGTGTATG	560	False	NA	NA	False	AATACA	-23	NA	74426027	74438360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_74426058_74430707_74430859_74434389_74434466_74435245_74435378_74437915
ENSMUSG00000031201.18_74460303_74493747_1	chrX	+	902	9	NNC	ENSMUSG00000031201.18	novel	2473	10	NA	NA	0	-591	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	482.141819774016	162	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTAATATTTTTTTTCA	NA	False	NA	NA	False	AATAAA	-21	NA	74460302	74493747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_74460452_74462016_74462072_74466384_74466503_74479072_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574
ENSMUSG00000031201.18_74460303_74493747_3	chrX	+	906	9	NNC	ENSMUSG00000031201.18	novel	2473	10	NA	NA	0	-591	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	482.141819774016	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTAATATTTTTTTTCA	NA	False	NA	NA	False	AATAAA	-21	NA	74460302	74493747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_74460452_74462016_74462072_74466384_74466507_74479072_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574
ENSMUSG00000031201.18_74460303_74494345_1	chrX	+	979	11	FSM	ENSMUSG00000031201.18	ENSMUST00000033544.14	4310	11	69	3262	0	7	multi-exon	FALSE	canonical	1	239	junction_10	337.579694294547	3376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTTGGAGGGACTACAT	NA	False	NA	NA	False	NA	NA	NA	74460302	74494345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289
ENSMUSG00000031201.18_74460303_74494345_2	chrX	+	966	10	NNC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	490.737087337903	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTTGGAGGGACTACAT	NA	False	NA	NA	False	NA	NA	NA	74460302	74494345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_74460452_74462016_74462072_74466384_74466507_74479072_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289
ENSMUSG00000031201.18_74460303_74494836_1	chrX	+	1457	10	NNC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	490.737087337903	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTTAACATTGTCACTAC	NA	False	NA	NA	False	NA	NA	NA	74460302	74494836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_74460452_74462016_74462072_74466384_74466507_74479072_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289
ENSMUSG00000031201.18_74460303_74494836_2	chrX	+	1470	11	FSM	ENSMUSG00000031201.18	ENSMUST00000033544.14	4310	11	69	2771	0	6	multi-exon	FALSE	canonical	1	239	junction_10	337.579694294547	3652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTTAACATTGTCACTAC	NA	False	NA	NA	False	NA	NA	NA	74460302	74494836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289
ENSMUSG00000031201.18_74460303_74499308_1	chrX	+	1061	10	NNC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	0	1701	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	519.51988756952	405	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTGGTCATGGTATTTT	NA	False	NA	15	True	NA	NA	NA	74460302	74499308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_74460452_74462016_74462072_74466384_74466507_74479072_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74499157
ENSMUSG00000031202.6_74618106_74621839_1	chrX	-	949	2	FSM	ENSMUSG00000031202.6	ENSMUST00000033545.6	3401	2	-2	2454	-2	-2454	multi-exon	FALSE	canonical	3	5	junction_1	0	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAACTCAACGTTTGGATA	440	False	NA	NA	False	AATAAA	-22	NA	74621839	74618105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_74618614_74621398
ENSMUSG00000031221.8_99537961_99559610_1	chrX	+	1327	6	NNC	ENSMUSG00000031221.8	novel	1518	6	NA	NA	0	-121	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	153.571611960023	5172	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGTATCCGCTGGTTTT	NA	False	NA	29	True	AATAAA	-32	NA	99537960	99559610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_99538157_99538510_99538805_99546600_99546797_99548795_99548876_99549545_99549659_99559162
ENSMUSG00000031221.8_99537961_99559610_2	chrX	+	1326	6	NNC	ENSMUSG00000031221.8	novel	1518	6	NA	NA	0	-121	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	148.395956818237	5219	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGTATCCGCTGGTTTT	NA	False	NA	29	True	AATAAA	-32	NA	99537960	99559610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_99538163_99538510_99538805_99546607_99546797_99548795_99548876_99549545_99549659_99559162
ENSMUSG00000031221.8_99537961_99559610_3	chrX	+	1326	6	NNC	ENSMUSG00000031221.8	novel	1518	6	NA	NA	0	-121	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	151.390092146085	5201	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGTATCCGCTGGTTTT	NA	False	NA	29	True	AATAAA	-32	NA	99537960	99559610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_99538163_99538510_99538805_99546600_99546797_99548802_99548876_99549545_99549659_99559162
ENSMUSG00000031226.14_104123381_104127093_1	chrX	+	913	6	NNC	ENSMUSG00000031226.14	novel	2638	6	NA	NA	0	327	at_least_one_novel_splicesite	FALSE	canonical	2	28	junction_5	559.857696205027	6258	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAATGACTGATCTTAGAAA	NA	False	NA	23	True	AATAAA	-20	NA	104123380	104127093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104126628
ENSMUSG00000031226.14_104123381_104127093_2	chrX	+	920	6	FSM	ENSMUSG00000031226.14	ENSMUST00000033577.11	2638	6	19	1699	0	327	multi-exon	FALSE	canonical	3	1180	junction_1	116.642359372571	6331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAATGACTGATCTTAGAAA	NA	False	NA	23	True	AATAAA	-20	NA	104123380	104127093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104126621
ENSMUSG00000031226.14_104123381_104160696_1	chrX	+	712	6	NNC	ENSMUSG00000031226.14	novel	1239	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_5	559.074950252647	305	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGGCCAGAGTTCCTTTT	NA	False	NA	5	True	AATAAA	-20	NA	104123380	104160696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104160432
ENSMUSG00000031231.5_105059322_105065564_1	chrX	+	493	3	FSM	ENSMUSG00000031231.5	ENSMUST00000033582.5	1001	3	16	492	0	0	multi-exon	FALSE	canonical	3	7724	junction_1	851.5	72833	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTAGGCTTTGTTTTTTTC	NA	False	NA	12	True	AATAAA	-24	NA	105059321	105065564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_105059477_105063184_105063310_105065351
ENSMUSG00000031242.8_106830948_106859940_1	chrX	-	1251	8	FSM	ENSMUSG00000031242.8	ENSMUST00000120722.2	5842	8	0	4591	0	495	multi-exon	TRUE	canonical	3	41	junction_6	7.21958786771044	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTCGCATAACCCAGAC	NA	False	NA	NA	False	AATAAA	-24	NA	106859940	106830947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_106831460_106831871_106831945_106834341_106834386_106836504_106836613_106836698_106836768_106837113_106837261_106851397_106851496_106859740
ENSMUSG00000031245.9_108049384_108057010_1	chrX	-	690	6	FSM	ENSMUSG00000031245.9	ENSMUST00000033597.9	1934	6	0	1244	0	-1244	multi-exon	FALSE	canonical	0	0	junction_3	41.3424721079908	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAGAAGATGGCAAAGAAGA	NA	False	NA	-28	True	AATGAA	-4	NA	108057010	108049383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_108049678_108051767_108051903_108054159_108054214_108054462_108054493_108055027_108055052_108056857
ENSMUSG00000031256.12_132960083_132976612_1	chrX	+	2598	11	FSM	ENSMUSG00000031256.12	ENSMUST00000113286.8	2717	11	119	0	0	0	multi-exon	FALSE	canonical	3	451	junction_8	82.5556781814552	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAAGTTTTGCTTTTTAA	NA	False	NA	4	True	AATAAA	-19	NA	132960082	132976612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261
ENSMUSG00000031266.8_133490513_133501754_1	chrX	-	1437	7	FSM	ENSMUSG00000031266.8	ENSMUST00000239113.2	3015	7	0	1578	0	-1578	multi-exon	FALSE	canonical	3	153	junction_5	18.580904176062	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTTTTCAACATAGGCT	NA	False	NA	-15	True	AATAAA	-27	NA	133501754	133490512	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_133490877_133491694_133491893_133492813_133492976_133494382_133494475_133495928_133496107_133497023_133497199_133501486
ENSMUSG00000031266.8_133490513_133501754_2	chrX	-	1432	7	NNC	ENSMUSG00000031266.8	novel	3015	7	NA	NA	0	-1578	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	67.4355659541429	426	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTTTTCAACATAGGCT	NA	False	NA	-15	True	AATAAA	-27	NA	133501754	133490512	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_133490877_133491699_133491893_133492813_133492976_133494382_133494475_133495928_133496107_133497023_133497199_133501486
ENSMUSG00000031278.13_141103529_141128496_1	chrX	-	1575	11	ISM	ENSMUSG00000031278.13	ENSMUST00000112907.8	5137	16	44844	2540	-17475	138	3prime_fragment	TRUE	canonical	3	142	junction_4	18.4380042303933	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTGAGTCTACTTTAACT	NA	False	NA	NA	False	AATAAA	-22	NA	141128496	141103528	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_141103831_141110971_141111130_141111843_141111959_141115187_141115380_141116665_141116741_141121879_141122053_141122945_141123086_141124330_141124403_141126069_141126194_141126302_141126454_141128423
ENSMUSG00000031297.15_100122816_100128978_2	chrX	-	1938	12	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	148	junction_10	377.275903601087	292	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAACCTGTCCTGTTCTT	NA	False	NA	NA	False	ATTAAA	-23	NA	100128978	100122815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127782_100127881_100128877
ENSMUSG00000031299.11_158905205_158921357_1	chrX	-	2794	11	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-5	0	intron_retention	FALSE	canonical	0	0	junction_5	435.563129752737	2345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTCTTGAGTTCCCTTTC	NA	False	NA	-1	True	ATTAAA	-24	NA	158921357	158905204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910719_158911456_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
ENSMUSG00000031299.11_158906637_158921357_1	chrX	-	1362	11	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-5	-1432	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	435.563129752737	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTGTATTTGGTGTAT	NA	False	NA	-10	True	AGTAAA	-18	NA	158921357	158906636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910719_158911456_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
ENSMUSG00000031299.11_158906637_158921357_2	chrX	-	1369	11	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-5	-1432	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	428.386787844817	1210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTGTATTTGGTGTAT	NA	False	NA	-10	True	AGTAAA	-18	NA	158921357	158906636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910563_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
ENSMUSG00000031299.11_158906637_158921357_3	chrX	-	1364	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	52	1432	-5	-1432	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	1455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTGTATTTGGTGTAT	NA	False	NA	-10	True	AGTAAA	-18	NA	158921357	158906636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
ENSMUSG00000031299.11_158906637_158921413_1	chrX	-	1415	11	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-4	-1432	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	423.617232888371	1198	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTGTATTTGGTGTAT	NA	False	NA	-10	True	AGTAAA	-18	NA	158921413	158906636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_158906944_158907514_158907624_158909194_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
ENSMUSG00000031310.17_100458536_100463415_1	chrX	-	884	5	NIC	ENSMUSG00000031310.17	novel	1859	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_4	54.2332923581079	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTCAGCCTCTCCTTCCC	NA	False	NA	-1	True	NA	NA	NA	100463415	100458535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_100459013_100459366_100459545_100460514_100460588_100460892_100460937_100463303
ENSMUSG00000031311.18_100473341_100491339_1	chrX	+	1524	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	180	858	0	30	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	982	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCATTGTCTAGTTTCCT	NA	False	NA	NA	False	AATAAA	-21	NA	100473340	100491339	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
ENSMUSG00000031311.18_100473341_100492197_1	chrX	+	2409	12	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	146	junction_9	1051.63693731909	13147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	20	True	ATTAAA	-21	NA	100473340	100492197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488424_100488900_100488941_100489724_100489835_100491199
ENSMUSG00000031311.18_100473341_100492197_2	chrX	+	2376	12	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1071.96669493101	12975	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	20	True	ATTAAA	-21	NA	100473340	100492197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483098_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
ENSMUSG00000031311.18_100473341_100492197_3	chrX	+	2382	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	180	0	0	0	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	13521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	20	True	ATTAAA	-21	NA	100473340	100492197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
ENSMUSG00000031311.18_100473341_100492197_4	chrX	+	717	5	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1722.54905590523	2403	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	20	True	ATTAAA	-21	NA	100473340	100492197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483156_100491800
ENSMUSG00000031327.11_102400197_102433356_1	chrX	+	918	6	FSM	ENSMUSG00000031327.11	ENSMUST00000116547.3	7375	6	115	6342	115	-6342	multi-exon	FALSE	canonical	3	35	junction_3	5.41848687365763	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATCGTTAACACTAAAAA	NA	False	NA	NA	False	AATAAA	-19	NA	102400196	102433356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_102400496_102409819_102409875_102417204_102417361_102430860_102430918_102431592_102431653_102433065
ENSMUSG00000031328.17_73267069_73271574_1	chrX	-	1886	9	ISM	ENSMUSG00000031328.17	ENSMUST00000144429.8	8233	47	18430	2	0	0	3prime_fragment	FALSE	canonical	3	605	junction_7	64.6634315127182	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTAGCTTTCATGGAAGG	NA	False	NA	-5	True	AATAAA	-23	NA	73271574	73267068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_73267584_73268357_73268562_73268645_73268865_73269003_73269181_73269807_73269941_73270466_73270583_73270803_73270942_73271096_73271364_73271457
ENSMUSG00000031329.5_102458073_102468057_2	chrX	+	683	7	FSM	ENSMUSG00000031329.5	ENSMUST00000033691.5	812	7	0	129	0	-129	multi-exon	FALSE	canonical	3	20	junction_2	4.2687494916219	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGCCTGGCTGTTTTGA	NA	False	NA	NA	False	AATAAA	-15	NA	102458072	102468057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_102458253_102459640_102459677_102460356_102460394_102461814_102461897_102464105_102464207_102465593_102465653_102467869
ENSMUSG00000031333.8_103327502_103457452_1	chrX	-	2428	16	FSM	ENSMUSG00000031333.8	ENSMUST00000033695.6	5667	16	0	3239	0	-3239	multi-exon	FALSE	canonical	3	253	junction_7	23.4516997725585	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGGTTGGATTTTTATGT	9861	False	NA	3	True	ATTAAA	-16	NA	103457452	103327501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_103327865_103334728_103334837_103338073_103338178_103339436_103339609_103343374_103343505_103343655_103343820_103344376_103344535_103345399_103345575_103346557_103346646_103346734_103346824_103347737_103348007_103348875_103349009_103366939_103367060_103386099_103386187_103388530_103388609_103457262
ENSMUSG00000031337.17_70258634_70352410_1	chrX	+	2635	14	ISM	ENSMUSG00000031337.17	ENSMUST00000061970.12	3379	15	22	6491	0	-1507	5prime_fragment	FALSE	canonical	3	300	junction_1	26.1022114731105	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGGAACCTTGTTGAT	NA	False	NA	NA	False	ATTAAA	-24	NA	70258633	70352410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305
ENSMUSG00000031347.13_71957310_71961940_1	chrX	-	1037	5	FSM	ENSMUSG00000031347.13	ENSMUST00000114551.10	1286	5	77	172	-50	0	multi-exon	FALSE	canonical	3	590	junction_4	36.4862987983161	2844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTCATTCTTTAAAGGAT	NA	False	NA	-13	True	AATAAA	-17	NA	71961940	71957309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293_71960453_71961919
ENSMUSG00000031349.5_71962163_71996704_1	chrX	+	816	5	ISM	ENSMUSG00000031349.5	ENSMUST00000033715.5	2168	8	0	5416	0	-558	5prime_fragment	FALSE	canonical	3	352	junction_4	19.9671605392454	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTGAAGTTAAATTTCAA	NA	False	NA	NA	False	NA	NA	NA	71962162	71996704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_71962300_71969899_71970017_71973229_71973389_71992770_71992918_71996448
ENSMUSG00000031349.5_71962163_72001286_1	chrX	+	1334	8	FSM	ENSMUSG00000031349.5	ENSMUST00000033715.5	2168	8	0	834	0	-834	multi-exon	FALSE	canonical	3	334	junction_6	28.7537042866494	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTCTTGACCTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	71962162	72001286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_71962300_71969899_71970017_71973229_71973389_71992770_71992918_71996448_71996578_71998677_71998821_71999942_72000046_72000887
ENSMUSG00000031349.5_71962163_72001738_1	chrX	+	1784	8	NNC	ENSMUSG00000031349.5	novel	2168	8	NA	NA	0	-382	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	135.568342581165	1287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACAGACTCTGGTGTGGT	NA	False	NA	14	True	CATAAA	-14	NA	71962162	72001738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_71962300_71969899_71970021_71973235_71973389_71992770_71992918_71996448_71996578_71998677_71998821_71999942_72000046_72000887
ENSMUSG00000031353.14_161543398_161561791_1	chrX	+	1947	12	FSM	ENSMUSG00000031353.14	ENSMUST00000033720.12	2244	12	0	297	0	39	multi-exon	FALSE	canonical	3	2711	junction_3	173.446540695797	17373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTGTTCTTTTAGA	NA	False	NA	7	True	AATAAA	-14	NA	161543397	161561791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
ENSMUSG00000031353.14_161543398_161561791_2	chrX	+	1940	12	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	0	39	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	885.102263317028	17313	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTGTTCTTTTAGA	NA	False	NA	7	True	AATAAA	-14	NA	161543397	161561791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556443_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
ENSMUSG00000031357.4_161639844_161671443_1	chrX	-	2296	9	FSM	ENSMUSG00000031357.4	ENSMUST00000033723.4	2087	9	0	-209	0	209	multi-exon	FALSE	canonical	3	113	junction_1	15.2105021284637	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAATTGTACGTATTTATA	NA	False	NA	-3	True	AATAAA	-21	NA	161671443	161639843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_161641005_161642294_161642443_161642868_161642928_161646055_161646205_161655510_161655651_161661326_161661401_161665675_161665743_161665963_161666083_161671064
ENSMUSG00000031358.18_167437843_167456894_1	chrX	-	1586	12	FSM	ENSMUSG00000031358.18	ENSMUST00000112137.2	2316	12	0	730	0	-725	multi-exon	FALSE	canonical	3	28	junction_9	6.17646827325928	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTGCACTATGTGGCTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	167456894	167437842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167456723
ENSMUSG00000031360.15_161684601_161696470_1	chrX	+	786	4	ISM	ENSMUSG00000031360.15	ENSMUST00000033727.14	3353	19	-27	119034	0	-7734	5prime_fragment	FALSE	canonical	3	133	junction_1	24.1430919496424	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGTATGCCTGATAGGT	NA	False	NA	NA	False	ATTAAA	-14	NA	161684600	161696470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_161684744_161686429_161686635_161693004_161693176_161696203
ENSMUSG00000031362.18_72277685_72286736_1	chrX	-	1184	9	NIC	ENSMUSG00000031362.18	novel	1220	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_7	119.637407924946	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286736	72277684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285802_72286219_72286267_72286581
ENSMUSG00000031370.13_162722964_162741659_1	chrX	-	1159	10	NIC	ENSMUSG00000031370.13	novel	2735	11	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	144	junction_2	281.651654213121	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATACTCTTTTATTTCAT	NA	False	NA	NA	False	CATAAA	-17	NA	162741659	162722963	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_162723171_162726095_162726310_162732255_162732375_162733182_162733222_162736565_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741583
ENSMUSG00000031370.13_162735609_162741608_1	chrX	-	1654	5	FSM	ENSMUSG00000031370.13	ENSMUST00000090840.10	3867	5	-14	2227	-14	978	multi-exon	FALSE	canonical	3	635	junction_1	78.6924392810389	4318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCCTTGAAGATATTTT	NA	False	NA	-10	True	AATATA	-15	NA	162741608	162735608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269
ENSMUSG00000031370.13_162735921_162741608_1	chrX	-	1342	5	FSM	ENSMUSG00000031370.13	ENSMUST00000090840.10	3867	5	-14	2539	-14	666	multi-exon	FALSE	canonical	3	635	junction_1	78.6924392810389	2821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTATCCTGTCTAACTT	NA	False	NA	-15	True	ATTAAA	-28	NA	162741608	162735920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269
ENSMUSG00000031370.13_162735921_162741659_1	chrX	-	1284	6	NNC	ENSMUSG00000031370.13	novel	460	6	NA	NA	-2	666	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	291.427246495588	2200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTATCCTGTCTAACTT	NA	False	NA	-15	True	ATTAAA	-28	NA	162741659	162735920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741475_162741583
ENSMUSG00000031370.13_162737406_162741659_1	chrX	-	516	5	NNC	ENSMUSG00000031370.13	novel	3867	5	NA	NA	-2	-770	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_4	324.605144752821	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAGGAAGCTCGAAAACG	NA	False	NA	NA	False	AAGAAA	-36	NA	162741659	162737405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_162737479_162739467_162739550_162740911_162740992_162741269_162741475_162741583
ENSMUSG00000031371.15_72480921_72502650_1	chrX	-	1375	10	NNC	ENSMUSG00000031371.15	novel	1380	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	176.740515662208	2429	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	False	NA	-12	True	AATAAA	-17	NA	72502650	72480920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72481172_72489415_72489531_72490538_72490744_72491565_72491663_72491797_72491957_72492416_72492509_72496604_72496667_72498472_72498541_72501579_72501696_72502440
ENSMUSG00000031379.14_163052543_163155783_1	chrX	+	1259	10	FSM	ENSMUSG00000031379.14	ENSMUST00000033749.9	1599	10	116	224	0	-224	multi-exon	FALSE	canonical	3	253	junction_3	17.8270151493682	1984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTTTTTGTAATGAAT	NA	False	NA	NA	False	AATAAA	-23	NA	163052542	163155783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
ENSMUSG00000031379.14_163052543_163155783_2	chrX	+	1130	9	NIC	ENSMUSG00000031379.14	novel	1599	10	NA	NA	0	-224	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	80.2507788124203	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTTTTTGTAATGAAT	NA	False	NA	NA	False	AATAAA	-23	NA	163052542	163155783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_163052674_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
ENSMUSG00000031379.14_163052543_163155905_1	chrX	+	1252	9	NIC	ENSMUSG00000031379.14	novel	1599	10	NA	NA	0	-102	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	80.2507788124203	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTCCTGATACATGCAAA	NA	False	NA	NA	False	AATAAA	-25	NA	163052542	163155905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_163052674_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
ENSMUSG00000031379.14_163052543_163156009_1	chrX	+	1485	10	FSM	ENSMUSG00000031379.14	ENSMUST00000033749.9	1599	10	116	-2	0	2	multi-exon	FALSE	canonical	3	253	junction_3	17.8270151493682	2249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTTTTTTATATGGG	NA	False	NA	NA	False	TATAAA	-17	NA	163052542	163156009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
ENSMUSG00000031379.14_163052569_163155581_1	chrX	+	1031	10	FSM	ENSMUSG00000031379.14	ENSMUST00000033749.9	1599	10	142	426	0	-426	multi-exon	FALSE	canonical	3	253	junction_3	17.8270151493682	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGGATGGACTGGCCATT	NA	False	NA	NA	False	AATGAA	-17	NA	163052568	163155581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
ENSMUSG00000031379.14_163140190_163155802_1	chrX	+	665	4	NNC	ENSMUSG00000031379.14	novel	898	9	NA	NA	87621	-205	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	122.627711205729	1972	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTCAGAATGCATTATATT	NA	False	NA	NA	False	AATAAA	-42	NA	163140189	163155802	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_163140351_163141143_163141227_163152041_163152109_163155448
ENSMUSG00000031381.17_163202803_163206650_1	chrX	+	1105	2	ISM	ENSMUSG00000031381.17	ENSMUST00000208741.2	854	6	20	8182	0	-8182	5prime_fragment	FALSE	canonical	3	206	junction_1	0	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAGATGGCTGTGCAGGT	NA	False	NA	NA	False	NA	NA	NA	163202802	163206650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_163202837_163205579
ENSMUSG00000031381.17_163202803_163215052_2	chrX	+	1714	6	FSM	ENSMUSG00000031381.17	ENSMUST00000033754.15	3594	6	20	1860	0	1	multi-exon	FALSE	canonical	3	160	junction_2	38.4052079801685	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGGAACTCCTTGCACT	NA	False	NA	12	True	GATAAA	-19	NA	163202802	163215052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_163202837_163205579_163206360_163210927_163211061_163211535_163211669_163211806_163212014_163214625
ENSMUSG00000031382.15_163228716_163242166_1	chrX	+	1222	6	ISM	ENSMUSG00000031382.15	ENSMUST00000033755.6	1369	7	7662	-6	7662	0	3prime_fragment	FALSE	canonical	1	1	junction_1	1.62480768092719	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTTAATTTAGTGTAT	NA	False	NA	NA	False	AATAAA	-19	NA	163228715	163242166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_163228805_163233450_163233559_163235894_163236046_163237383_163237519_163238792_163238985_163241619
ENSMUSG00000031387.15_72965728_72974375_1	chrX	-	1260	10	NIC	ENSMUSG00000031387.15	novel	1318	11	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	225	junction_8	580.11297324607	3510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTTGTGTGCGCGCCTCT	NA	False	NA	-3	True	AATAAA	-17	NA	72974375	72965727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72974013_72974124_72974319
ENSMUSG00000031387.15_72965728_72974375_2	chrX	-	1260	10	NIC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	84	junction_7	628.476602194682	2840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTTGTGTGCGCGCCTCT	NA	False	NA	-3	True	AATAAA	-17	NA	72974375	72965727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973792_72973869_72974013_72974124_72974319
ENSMUSG00000031387.15_72965728_72974456_1	chrX	-	1310	11	NNC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_10	590.512192930849	9241	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTTGTGTGCGCGCCTCT	NA	False	NA	-3	True	AATAAA	-17	NA	72974456	72965727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974426
ENSMUSG00000031388.15_72960493_72965459_1	chrX	-	939	7	NNC	ENSMUSG00000031388.15	novel	1031	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	406.229409734615	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGAATGTGCATAGTGG	NA	False	NA	-15	True	AATAAA	-24	NA	72965459	72960492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72960893_72961448_72961559_72963348_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUSG00000031388.15_72960493_72965459_2	chrX	-	946	8	NNC	ENSMUSG00000031388.15	novel	1031	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	383.16799747071	1721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGAATGTGCATAGTGG	NA	False	NA	-15	True	AATAAA	-24	NA	72965459	72960492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72960893_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964970_72965356
ENSMUSG00000031388.15_72960493_72965512_1	chrX	-	1007	8	NNC	ENSMUSG00000031388.15	novel	1031	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	383.968642427148	5989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGAATGTGCATAGTGG	NA	False	NA	-15	True	AATAAA	-24	NA	72965512	72960492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72960893_72961442_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUSG00000031388.15_72960493_72965512_2	chrX	-	996	8	NNC	ENSMUSG00000031388.15	novel	1031	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	380.056333096201	3078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGAATGTGCATAGTGG	NA	False	NA	-15	True	AATAAA	-24	NA	72965512	72960492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72960893_72961448_72961534_72963107_72963153_72963359_72963467_72963564_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUSG00000031388.15_72960493_72965512_4	chrX	-	991	8	NNC	ENSMUSG00000031388.15	novel	979	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	383.968642427148	5210	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGAATGTGCATAGTGG	NA	False	NA	-15	True	AATAAA	-24	NA	72965512	72960492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72960883_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUSG00000031388.15_72964087_72965459_1	chrX	-	988	2	FSM	ENSMUSG00000031388.15	ENSMUST00000153929.2	355	2	-1	-632	-1	496	multi-exon	FALSE	canonical	3	1058	junction_1	0	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGTGAGAAACCAAT	NA	False	NA	NA	False	NA	NA	NA	72965459	72964086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72964977_72965361
ENSMUSG00000031389.18_72949574_72954904_1	chrX	-	759	4	ISM	ENSMUSG00000031389.18	ENSMUST00000114404.8	2895	22	-69	11292	0	417	5prime_fragment	FALSE	canonical	3	29	junction_1	2.44948974278318	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCCCAAATTTCAGATCTG	NA	False	NA	NA	False	NA	NA	NA	72954904	72949573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_72949826_72950034_72950198_72950274_72950483_72954768
ENSMUSG00000031392.19_73058412_73061085_1	chrX	-	1196	3	ISM	ENSMUSG00000031392.19	ENSMUST00000148706.8	2812	12	6347	0	855	0	3prime_fragment	FALSE	canonical	3	382	junction_1	3	801	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-35	NA	73061085	73058411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_73059108_73060153_73060304_73060735
ENSMUSG00000031393.17_73078894_73129225_1	chrX	-	1792	4	FSM	ENSMUSG00000031393.17	ENSMUST00000100750.10	10538	4	50	8696	-7	0	multi-exon	FALSE	canonical	3	104	junction_3	52.083266666624	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTTAGAGTTTCGTGGC	NA	False	NA	NA	False	AATAAA	-22	NA	73129225	73078893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_73080101_73080587_73080939_73123514_73123639_73129115
ENSMUSG00000031399.16_73428325_73436861_1	chrX	-	1531	10	NIC	ENSMUSG00000031399.16	novel	814	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_9	35.9828491381487	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAGAGTCAAGGGTGGTG	NA	False	NA	-6	True	AATAAA	-43	NA	73436861	73428324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_73429042_73430027_73430155_73430237_73430323_73430639_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280_73436354_73436704
ENSMUSG00000031400.11_73453089_73472487_1	chrX	-	2339	13	FSM	ENSMUSG00000031400.11	ENSMUST00000004327.11	2652	13	313	0	-1	0	multi-exon	FALSE	canonical	3	267	junction_8	19.8990507869653	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTCTCCTTGTTCTTTTC	NA	False	NA	-6	True	ATTAAA	-18	NA	73472487	73453088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_73453904_73454002_73454096_73454188_73454266_73454362_73454599_73454863_73455051_73455170_73455265_73455571_73455698_73455924_73456084_73457469_73457688_73458513_73458623_73458721_73458760_73471657_73471786_73472428
ENSMUSG00000031402.13_74153880_74157272_1	chrX	-	929	4	ISM	ENSMUSG00000031402.13	ENSMUST00000114092.8	1378	12	17178	-374	4182	374	3prime_fragment	FALSE	canonical	3	242	junction_2	9.80929264637477	1813	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGTGACCCTGTAACTCCA	NA	False	NA	-6	True	AATAAA	-21	NA	74157272	74153879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_74154450_74155532_74155608_74155804_74156008_74157191
ENSMUSG00000031403.15_74139659_74152327_1	chrX	+	1549	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	199	1056	0	445	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	2264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGAAAGTAAAAGTGG	NA	False	NA	NA	False	AAAAAG	-6	NA	74139658	74152327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031403.15_74139659_74153185_1	chrX	+	2407	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	199	198	0	-198	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	5077	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74139658	74153185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031403.15_74139659_74153383_1	chrX	+	2605	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	199	0	0	0	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	6742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	34	True	ATTAAA	-21	NA	74139658	74153383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031403.15_74147743_74153185_1	chrX	+	1636	6	ISM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	8283	198	-1812	-198	3prime_fragment	FALSE	canonical	3	2464	junction_5	150.861525910353	987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74147742	74153185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031403.15_74147743_74153185_2	chrX	+	1497	7	NNC	ENSMUSG00000031403.15	novel	610	3	NA	NA	-1812	-198	at_least_one_novel_splicesite	FALSE	canonical	3	454	junction_1	848.656143558744	722	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74147742	74153185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_74147807_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031403.15_74147743_74153383_1	chrX	+	1695	7	NNC	ENSMUSG00000031403.15	novel	610	3	NA	NA	-1812	0	at_least_one_novel_splicesite	FALSE	canonical	3	454	junction_1	848.656143558744	2309	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	34	True	ATTAAA	-21	NA	74147742	74153383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_74147807_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031403.15_74147743_74153383_2	chrX	+	1834	6	ISM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	8283	0	-1812	0	3prime_fragment	FALSE	canonical	3	2464	junction_5	150.861525910353	2543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	34	True	ATTAAA	-21	NA	74147742	74153383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUSG00000031422.17_135633691_135642198_1	chrX	-	1784	4	FSM	ENSMUSG00000031422.17	ENSMUST00000033797.13	1996	4	212	0	-97	0	multi-exon	FALSE	canonical	3	68	junction_3	1439.93989072075	1271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	AATAAA	-34	NA	135642198	135633690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135642141
ENSMUSG00000031422.17_135634703_135642027_1	chrX	-	784	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	74	1001	-2	0	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGTACGCAGTTAATGAAG	NA	False	NA	NA	False	NA	NA	NA	135642027	135634702	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
ENSMUSG00000031422.17_135635179_135642027_1	chrX	-	308	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	74	1477	-2	0	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGACAACTTTAAGAA	NA	False	NA	NA	False	NA	NA	NA	135642027	135635178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
ENSMUSG00000031429.15_139849305_139857438_2	chrX	-	1303	5	FSM	ENSMUSG00000031429.15	ENSMUST00000033805.15	1430	5	0	127	0	-127	multi-exon	FALSE	canonical	3	522	junction_1	39.0024037720754	2595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACCTTGTGTTGAAAAGA	NA	False	NA	NA	False	AATAAA	-16	NA	139857438	139849304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_139850059_139852895_139853063_139853153_139853301_139854548_139854648_139857302
ENSMUSG00000031429.15_139849689_139857438_1	chrX	-	840	5	FSM	ENSMUSG00000031429.15	ENSMUST00000112978.2	1390	5	39	511	0	-511	multi-exon	FALSE	canonical	3	80	junction_1	228.562218006389	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTGTGGCTGTCCTGTC	NA	False	NA	-1	True	ATTAAA	-21	NA	139857438	139849688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_139850059_139852974_139853063_139853153_139853301_139854548_139854648_139857302
ENSMUSG00000031429.15_139849689_139857438_2	chrX	-	919	5	FSM	ENSMUSG00000031429.15	ENSMUST00000033805.15	1430	5	0	511	0	-511	multi-exon	FALSE	canonical	3	522	junction_1	39.0024037720754	1771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTGTGGCTGTCCTGTC	NA	False	NA	-1	True	ATTAAA	-21	NA	139857438	139849688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_139850059_139852895_139853063_139853153_139853301_139854548_139854648_139857302
ENSMUSG00000031431.14_139441011_139443936_1	chrX	-	1240	3	FSM	ENSMUSG00000031431.14	ENSMUST00000055738.12	1974	3	0	734	0	0	multi-exon	FALSE	canonical	3	154	junction_2	61	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGCATCGTTTTTCTATA	NA	False	NA	NA	False	TATAAA	-17	NA	139443936	139441010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_139441857_139442853_139442906_139443594
ENSMUSG00000031432.4_139357362_139376057_2	chrX	+	998	7	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	0	-832	at_least_one_novel_splicesite	FALSE	canonical	3	167	junction_1	718.530541375166	298	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGGTATTGGTGAGTT	NA	False	NA	23	True	AATAAA	-19	NA	139357361	139376057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_139357478_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917
ENSMUSG00000031432.4_139357362_139376889_1	chrX	+	2067	8	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	912.790809125776	12269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	27	True	AATAAA	-19	NA	139357361	139376889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_139357613_139361130_139361233_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917
ENSMUSG00000031432.4_139357362_139376889_4	chrX	+	1501	5	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	910.842021154053	1309	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	27	True	AATAAA	-19	NA	139357361	139376889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_139357613_139365979_139366034_139372855_139372920_139374527_139374688_139375917
ENSMUSG00000031432.4_139357362_139376889_5	chrX	+	1830	7	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	167	junction_1	718.530541375166	7512	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	27	True	AATAAA	-19	NA	139357361	139376889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_139357478_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917
ENSMUSG00000031432.4_139357362_139376889_6	chrX	+	1968	7	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	811.161444404805	12346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	27	True	AATAAA	-19	NA	139357361	139376889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369714_139372747_139372920_139374527_139374688_139375917
ENSMUSG00000031447.8_13222595_13225338_1	chr8	+	1224	4	ISM	ENSMUSG00000031447.8	ENSMUST00000033824.8	2229	9	13434	0	-586	0	3prime_fragment	FALSE	canonical	3	2592	junction_1	216.043719855239	3241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACGTGTCCTTCTGTGAC	NA	False	NA	21	True	AATAAA	-22	NA	13222594	13225338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_13222661_13223626_13223694_13223779_13223951_13224418
ENSMUSG00000031458.9_13934474_13940268_1	chr8	-	1113	4	FSM	ENSMUSG00000031458.9	ENSMUST00000033839.9	793	4	0	-320	0	320	multi-exon	FALSE	canonical	0	0	junction_2	307.613393726606	5946	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATATGAGTACACTGTTG	NA	False	NA	NA	False	TTTAAA	-21	NA	13940268	13934473	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_13935202_13935665_13935882_13937759_13937827_13940166
ENSMUSG00000031458.9_13934794_13940268_1	chr8	-	788	4	NNC	ENSMUSG00000031458.9	novel	793	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	307.613393726606	5035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGTATGCTCTGTCTGCG	NA	False	NA	-8	True	AATAAA	-16	NA	13940268	13934793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_13935202_13935665_13935873_13937755_13937827_13940166
ENSMUSG00000031458.9_13935512_13940268_1	chr8	-	539	3	ISM	ENSMUSG00000031458.9	ENSMUST00000033839.9	793	4	0	718	0	0	5prime_fragment	FALSE	canonical	0	0	junction_1	324	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCCACAACATGTCAATTT	NA	False	NA	NA	False	ATTAAA	-14	NA	13940268	13935511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_13935882_13937759_13937827_13940166
ENSMUSG00000031467.11_18896540_18932068_1	chr8	+	1227	8	FSM	ENSMUSG00000031467.11	ENSMUST00000033847.5	2841	8	245	1369	245	-1369	multi-exon	FALSE	canonical	0	0	junction_7	241.544266446259	1082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTTTTTTGTTTTGTTT	NA	False	NA	14	True	ATTAAA	-18	NA	18896539	18932068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_18896795_18911492_18911563_18918908_18919025_18920853_18920944_18926055_18926147_18928022_18928185_18929620_18929749_18931753
ENSMUSG00000031467.11_18896540_18933437_1	chr8	+	2596	8	FSM	ENSMUSG00000031467.11	ENSMUST00000033847.5	2841	8	245	0	245	0	multi-exon	FALSE	canonical	0	0	junction_7	241.544266446259	1181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTCTTGTTTTTTCAA	NA	False	NA	15	True	AATAAA	-25	NA	18896539	18933437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_18896795_18911492_18911563_18918908_18919025_18920853_18920944_18926055_18926147_18928022_18928185_18929620_18929749_18931753
ENSMUSG00000031479.10_22682825_22708648_1	chr8	+	1294	13	NIC	ENSMUSG00000031479.10	novel	3574	14	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	2	2	junction_1	113.361607992595	1583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGGTCTCAGAAACT	NA	False	NA	22	True	TATAAA	-17	NA	22682824	22708648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_22682983_22692289_22692361_22695682_22695798_22696792_22696883_22697872_22697960_22700284_22700318_22700404_22700483_22701553_22701689_22703510_22703577_22706527_22706593_22707140_22707226_22708227_22708305_22708414
ENSMUSG00000031479.10_22682825_22708648_2	chr8	+	1363	14	FSM	ENSMUSG00000031479.10	ENSMUST00000033866.9	3574	14	0	2211	0	0	multi-exon	FALSE	canonical	3	316	junction_5	36.370219952707	2125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGGTCTCAGAAACT	NA	False	NA	22	True	TATAAA	-17	NA	22682824	22708648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_22682983_22688913_22688983_22692289_22692361_22695682_22695798_22696792_22696883_22697872_22697960_22700284_22700318_22700404_22700483_22701553_22701689_22703510_22703577_22706527_22706593_22707140_22707226_22708227_22708305_22708414
ENSMUSG00000031482.10_22867771_22888560_1	chr8	-	1173	7	FSM	ENSMUSG00000031482.10	ENSMUST00000033871.8	3430	7	53	2204	0	-1058	multi-exon	FALSE	canonical	3	211	junction_4	26.1002341411379	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGAACTTGTCTTCCCTT	NA	False	NA	NA	False	NA	NA	NA	22888560	22867770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_22867998_22869299_22869459_22870853_22871024_22873222_22873361_22879829_22880089_22885728_22885844_22888455
ENSMUSG00000031483.9_27513894_27526757_1	chr8	+	1172	12	FSM	ENSMUSG00000031483.9	ENSMUST00000033873.9	4838	12	67	3599	0	116	multi-exon	FALSE	canonical	3	258	junction_9	30.3309568287708	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCCTTGACTCTTCTTAC	NA	False	NA	NA	False	NA	NA	NA	27513893	27526757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_27513935_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571_27519698_27521725_27521800_27521954_27522014_27522261_27522354_27523413_27523504_27526041_27526122_27526460
ENSMUSG00000031483.9_27513894_27529164_1	chr8	+	3579	12	FSM	ENSMUSG00000031483.9	ENSMUST00000033873.9	4838	12	67	1192	0	-1192	multi-exon	FALSE	canonical	3	258	junction_9	30.3309568287708	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTGTTTGTACTTCCAT	NA	False	NA	10	True	TATAAA	-16	NA	27513893	27529164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_27513935_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571_27519698_27521725_27521800_27521954_27522014_27522261_27522354_27523413_27523504_27526041_27526122_27526460
ENSMUSG00000031483.9_27513894_27529465_1	chr8	+	3880	12	FSM	ENSMUSG00000031483.9	ENSMUST00000033873.9	4838	12	67	891	0	-891	multi-exon	FALSE	canonical	3	258	junction_9	30.3309568287708	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACCAGTAGATTGGAGGA	NA	False	NA	35	True	AATAAA	-32	NA	27513893	27529465	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_27513935_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571_27519698_27521725_27521800_27521954_27522014_27522261_27522354_27523413_27523504_27526041_27526122_27526460
ENSMUSG00000031485.16_27532626_27546160_1	chr8	+	2525	9	NNC	ENSMUSG00000031485.16	novel	3603	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	86.0112637972493	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGCGTGTGGGTGTTT	NA	False	NA	25	True	AATAAA	-17	NA	27532625	27546160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313_27544047_27545081
ENSMUSG00000031487.6_27613854_27618660_1	chr8	-	1313	4	FSM	ENSMUSG00000031487.6	ENSMUST00000210230.2	620	4	-19	-674	0	379	multi-exon	FALSE	canonical	2	6	junction_3	38.1255236758206	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTCTTGGCTTTTCTTTT	NA	False	NA	NA	False	AAGAAA	-1	NA	27618660	27613853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_27614649_27615847_27616170_27617487_27617548_27618524
ENSMUSG00000031487.6_27613854_27618660_2	chr8	-	1389	4	FSM	ENSMUSG00000031487.6	ENSMUST00000033877.6	1899	4	48	462	0	379	multi-exon	FALSE	canonical	3	75	junction_1	8.9938250421547	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTCTTGGCTTTTCTTTT	NA	False	NA	NA	False	AAGAAA	-1	NA	27618660	27613853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_27614649_27615847_27616170_27617487_27617548_27618448
ENSMUSG00000031489.16_27715804_27717608_1	chr8	-	1057	3	NNC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	914	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	60.5	572	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27717608	27715803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_27716469_27716753_27716822_27717284
ENSMUSG00000031489.16_27715804_27717608_3	chr8	-	1102	3	NNC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	914	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_2	15.5	153	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27717608	27715803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_27716411_27716753_27716925_27717284
ENSMUSG00000031489.16_27715804_27717608_4	chr8	-	999	3	NNC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	914	0	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	38.5	370	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27717608	27715803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_27716411_27716753_27716822_27717284
ENSMUSG00000031489.16_27715804_27717608_5	chr8	-	1086	3	FSM	ENSMUSG00000031489.16	ENSMUST00000121838.2	1864	3	1003	-225	914	0	multi-exon	FALSE	canonical	3	73	junction_1	27.5	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27717608	27715803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_27716498_27716753_27716822_27717284
ENSMUSG00000031489.16_27734496_27740879_1	chr8	-	1449	3	NNC	ENSMUSG00000031489.16	novel	669	4	NA	NA	-235	-15232	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	11.5	155	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	27740879	27734495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_27735521_27739175_27739238_27740517
ENSMUSG00000031490.7_27750357_27765543_1	chr8	+	831	3	NNC	ENSMUSG00000031490.7	novel	1997	3	NA	NA	0	17	at_least_one_novel_splicesite	FALSE	canonical	3	634	junction_1	7191	33221	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCGCCCACAGCTGGGCC	NA	False	NA	17	True	AATAAA	-17	NA	27750356	27765543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_27750579_27763357_27763531_27765107
ENSMUSG00000031490.7_27750357_27765543_2	chr8	+	833	3	NNC	ENSMUSG00000031490.7	novel	1997	3	NA	NA	0	17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7188.5	4030	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCGCCCACAGCTGGGCC	NA	False	NA	17	True	AATAAA	-17	NA	27750356	27765543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_27750579_27763350_27763546_27765127
ENSMUSG00000031490.7_27750357_27765543_3	chr8	+	836	3	NNC	ENSMUSG00000031490.7	novel	1997	3	NA	NA	0	17	at_least_one_novel_splicesite	FALSE	canonical	1	215	junction_2	7081	47055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCGCCCACAGCTGGGCC	NA	False	NA	17	True	AATAAA	-17	NA	27750356	27765543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_27750579_27763350_27763535_27765113
ENSMUSG00000031490.7_27750357_27765606_1	chr8	+	896	3	NNC	ENSMUSG00000031490.7	novel	1997	3	NA	NA	0	80	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7188.5	5435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGTCCAGTGTTTATG	NA	False	NA	-45	True	NA	NA	NA	27750356	27765606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_27750579_27763350_27763546_27765127
ENSMUSG00000031490.7_27750357_27765606_2	chr8	+	894	3	NNC	ENSMUSG00000031490.7	novel	1997	3	NA	NA	0	80	at_least_one_novel_splicesite	FALSE	canonical	3	634	junction_1	7191	46804	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGTCCAGTGTTTATG	NA	False	NA	-45	True	NA	NA	NA	27750356	27765606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_27750579_27763357_27763531_27765107
ENSMUSG00000031490.7_27750357_27765606_3	chr8	+	899	3	NNC	ENSMUSG00000031490.7	novel	1997	3	NA	NA	0	80	at_least_one_novel_splicesite	FALSE	canonical	1	215	junction_2	7081	61669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGTCCAGTGTTTATG	NA	False	NA	-45	True	NA	NA	NA	27750356	27765606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_27750579_27763350_27763535_27765113
ENSMUSG00000031490.7_27750357_27765673_1	chr8	+	966	3	NNC	ENSMUSG00000031490.7	novel	1997	3	NA	NA	0	147	at_least_one_novel_splicesite	FALSE	canonical	1	215	junction_2	7081	61975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAGTAATCTATCTATCT	NA	False	NA	22	True	AAAAAG	-15	NA	27750356	27765673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_27750579_27763350_27763535_27765113
ENSMUSG00000031505.12_11564021_11564660_1	chr8	+	339	2	NIC	ENSMUSG00000031505.12	novel	2830	9	NA	NA	1635	-300	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCGCAACGTTACTGTGC	5561	False	NA	NA	False	NA	NA	NA	11564020	11564660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_11564192_11564492
ENSMUSG00000031508.15_11661583_11685036_1	chr8	-	2280	7	NIC	ENSMUSG00000031508.15	novel	2398	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	194.263280684287	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685036	11661582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11684810
ENSMUSG00000031508.15_11664963_11685736_1	chr8	-	1755	5	FSM	ENSMUSG00000031508.15	ENSMUST00000169782.3	5156	5	21	3380	18	0	multi-exon	FALSE	canonical	3	209	junction_2	122.541829593001	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGCCCAGAACTTGCTCT	NA	False	NA	NA	False	AATAAA	-39	NA	11685736	11664962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
ENSMUSG00000031509.11_11705479_11716141_1	chr8	-	775	6	NNC	ENSMUSG00000031509.11	novel	1263	6	NA	NA	-3537	0	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_3	15.5897402159241	550	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATCTGATAGGGCTGTT	NA	False	NA	-9	True	AATAAA	-21	NA	11716141	11705478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_11705682_11706108_11706190_11711671_11711756_11712589_11712692_11715035_11715099_11715899
ENSMUSG00000031511.17_11808317_11852250_1	chr8	+	1148	8	NNC	ENSMUSG00000031511.17	novel	4451	20	NA	NA	0	1291	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	32.945223555199	31	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGAGAATCTTCATTGTG	9591	False	NA	NA	False	NA	NA	NA	11808316	11852250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_11808518_11831154_11831240_11832524_11832656_11835712_11835915_11841455_11841545_11850459_11850555_11850772_11850869_11852001
ENSMUSG00000031513.9_34603887_34613937_1	chr8	-	1468	4	FSM	ENSMUSG00000031513.9	ENSMUST00000033910.9	2879	4	250	1161	250	-1161	multi-exon	FALSE	canonical	3	354	junction_3	12.9614813968157	2625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTAATAACGTTTAGAAAT	9036	False	NA	NA	False	AGTAAA	-18	NA	34613937	34603886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_34604993_34606007_34606195_34607914_34607991_34613838
ENSMUSG00000031513.9_34604445_34613937_1	chr8	-	910	4	FSM	ENSMUSG00000031513.9	ENSMUST00000033910.9	2879	4	250	1719	250	-1719	multi-exon	FALSE	canonical	3	354	junction_3	12.9614813968157	2574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTTTCATTCAGTCAG	9036	False	NA	1	True	ATTAAA	-18	NA	34613937	34604444	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_34604993_34606007_34606195_34607914_34607991_34613838
ENSMUSG00000031513.9_34604687_34613880_1	chr8	-	601	4	NNC	ENSMUSG00000031513.9	novel	2879	4	NA	NA	307	-1961	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	179.621824954542	103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGCTGGTTTCCCACTT	9093	False	NA	-3	True	ATTAAA	-22	NA	34613880	34604686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_34604993_34606007_34606195_34607914_34607981_34613838
ENSMUSG00000031513.9_34604687_34613937_1	chr8	-	668	4	FSM	ENSMUSG00000031513.9	ENSMUST00000033910.9	2879	4	250	1961	250	-1961	multi-exon	FALSE	canonical	3	354	junction_3	12.9614813968157	2328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGCTGGTTTCCCACTT	9036	False	NA	-3	True	ATTAAA	-22	NA	34613937	34604686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_34604993_34606007_34606195_34607914_34607991_34613838
ENSMUSG00000031516.12_34557574_34575617_1	chr8	-	913	7	NNC	ENSMUSG00000031516.12	novel	1249	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	145.345183003161	2751	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGCCTCAATTTCCATT	NA	False	NA	0	True	AATAAA	-31	NA	34575617	34557573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_34557991_34559664_34559808_34560782_34560831_34562037_34562127_34564342_34564449_34573495_34573561_34575572
ENSMUSG00000031516.12_34557574_34575617_2	chr8	-	912	7	NNC	ENSMUSG00000031516.12	novel	1249	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	147.498870052169	2757	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGCCTCAATTTCCATT	NA	False	NA	0	True	AATAAA	-31	NA	34575617	34557573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_34557997_34559664_34559808_34560782_34560831_34562037_34562127_34564342_34564449_34573495_34573554_34575572
ENSMUSG00000031519.5_54975083_54983033_1	chr8	+	1851	5	NIC	ENSMUSG00000031519.5	novel	425	3	NA	NA	-7532	-53639	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	266	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGCGCACGTCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	54975082	54983033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_54976431_54977975_54978092_54979485_54979563_54981376_54981451_54982797
ENSMUSG00000031519.5_54976249_54983033_1	chr8	+	685	5	NIC	ENSMUSG00000031519.5	novel	425	3	NA	NA	-6366	-53639	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	199	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGCGCACGTCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	54976248	54983033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_54976431_54977975_54978092_54979485_54979563_54981376_54981451_54982797
ENSMUSG00000031520.7_54530397_54639486_1	chr8	+	2048	7	FSM	ENSMUSG00000031520.7	ENSMUST00000033919.6	2449	7	-244	645	-244	-645	multi-exon	FALSE	canonical	3	36	junction_4	8.69386757049665	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATGAAGTTCAGTCTTTT	777	False	NA	NA	False	AATAAA	-19	NA	54530396	54639486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_54530961_54609992_54610195_54612327_54612519_54622059_54622212_54633736_54633844_54634121_54634456_54638988
ENSMUSG00000031520.7_54530752_54639486_1	chr8	+	1693	7	FSM	ENSMUSG00000031520.7	ENSMUST00000033919.6	2449	7	111	645	0	-645	multi-exon	FALSE	canonical	3	36	junction_4	8.69386757049665	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATGAAGTTCAGTCTTTT	1132	False	NA	NA	False	AATAAA	-19	NA	54530751	54639486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_54530961_54609992_54610195_54612327_54612519_54622059_54622212_54633736_54633844_54634121_54634456_54638988
ENSMUSG00000031521.6_53964762_53976457_1	chr8	+	1243	9	NIC	ENSMUSG00000031521.6	novel	1181	9	NA	NA	0	1	combination_of_known_splicesites	TRUE	canonical	3	23	junction_6	114.178314490975	1588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGTCTACTTCCTTA	NA	False	NA	23	True	AATAAA	-17	NA	53964761	53976457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950_53972005_53973271_53973380_53974084_53974219_53976210
ENSMUSG00000031521.6_53964833_53976457_1	chr8	+	1186	9	NNC	ENSMUSG00000031521.6	novel	2250	10	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	123.953053108828	1582	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGTCTACTTCCTTA	NA	False	NA	23	True	AATAAA	-17	NA	53964832	53976457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950_53972027_53973271_53973380_53974092_53974219_53976210
ENSMUSG00000031533.5_22901414_22919496_1	chr8	+	1286	7	NNC	ENSMUSG00000031533.5	novel	1515	7	NA	NA	0	-185	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	286.685900517545	3304	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCCTGTGTTGATCATTG	NA	False	NA	15	True	ATTAAA	-24	NA	22901413	22919496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_22901601_22904731_22905020_22909749_22909902_22911325_22911467_22914362_22914437_22917763_22917908_22919196
ENSMUSG00000031533.5_22901414_22919496_2	chr8	+	1293	7	FSM	ENSMUSG00000031533.5	ENSMUST00000033934.5	1515	7	37	185	0	-185	multi-exon	FALSE	canonical	3	683	junction_2	48.7100263463968	3355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCCTGTGTTGATCATTG	NA	False	NA	15	True	ATTAAA	-24	NA	22901413	22919496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911467_22914362_22914437_22917763_22917908_22919196
ENSMUSG00000031533.5_22901414_22919496_3	chr8	+	1005	6	NIC	ENSMUSG00000031533.5	novel	1515	7	NA	NA	0	-185	combination_of_known_splicesites	FALSE	canonical	3	49	junction_1	284.186136185423	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCCTGTGTTGATCATTG	NA	False	NA	15	True	ATTAAA	-24	NA	22901413	22919496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_22901601_22909742_22909902_22911325_22911467_22914362_22914437_22917763_22917908_22919196
ENSMUSG00000031534.16_22952630_22966673_1	chr8	-	1178	4	FSM	ENSMUSG00000031534.16	ENSMUST00000033935.16	1402	4	225	-1	198	0	multi-exon	FALSE	canonical	3	179	junction_1	20.3960780543711	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTTGCATCATTTTGT	NA	False	NA	0	True	NA	NA	NA	22966673	22952629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_22953392_22961464_22961590_22963457_22963597_22966521
ENSMUSG00000031534.16_22953018_22966673_1	chr8	-	790	4	FSM	ENSMUSG00000031534.16	ENSMUST00000033935.16	1402	4	225	387	198	-387	multi-exon	FALSE	canonical	3	179	junction_1	20.3960780543711	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGGGGTAGTTTGCTC	NA	False	NA	0	True	ATTAAA	-14	NA	22966673	22953017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_22953392_22961464_22961590_22963457_22963597_22966521
ENSMUSG00000031536.7_23118142_23143441_1	chr8	-	1203	14	NNC	ENSMUSG00000031536.7	novel	1201	14	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	56.8945874652434	1110	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCTTAACAAATGTGTTT	NA	False	NA	NA	False	AATAAA	-20	NA	23143441	23118141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_23118386_23120358_23120499_23121470_23121536_23127083_23127171_23129949_23130021_23130374_23130448_23130528_23130584_23132320_23132373_23135060_23135111_23137428_23137488_23138197_23138273_23140504_23140567_23143075_23143134_23143329
ENSMUSG00000031545.7_23663749_23698392_1	chr8	-	3080	13	FSM	ENSMUSG00000031545.7	ENSMUST00000167004.3	5518	13	-30	2468	-30	-2468	multi-exon	FALSE	canonical	3	189	junction_11	21.3085793884894	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGGGACTTTGCCTTCAT	NA	False	NA	-18	True	AATAAA	-18	NA	23698392	23663748	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_23664677_23665355_23665436_23665523_23665653_23669430_23669517_23669784_23669841_23670116_23670233_23670648_23670743_23670875_23670966_23671788_23671864_23672678_23672980_23674544_23674615_23680731_23681709_23698314
ENSMUSG00000031546.7_23716844_23727675_1	chr8	-	1143	8	NNC	ENSMUSG00000031546.7	novel	1349	8	NA	NA	0	-212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	225.961708874648	3935	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTCTACTACTTACTG	NA	False	NA	-3	True	AATAAA	-24	NA	23727675	23716843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_23717192_23717264_23717356_23719431_23719521_23719621_23719720_23722620_23722735_23724769_23724857_23726995_23727110_23727473
ENSMUSG00000031546.7_23716844_23727675_2	chr8	-	1143	8	NNC	ENSMUSG00000031546.7	novel	1349	8	NA	NA	0	-212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	228.891561528108	3983	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTCTACTACTTACTG	NA	False	NA	-3	True	AATAAA	-24	NA	23727675	23716843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_23717192_23717264_23717356_23719431_23719521_23719621_23719720_23722620_23722735_23724763_23724857_23726995_23727116_23727485
ENSMUSG00000031546.7_23716844_23727675_3	chr8	-	1046	7	NIC	ENSMUSG00000031546.7	novel	1349	8	NA	NA	0	-212	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	242.691676824732	1253	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTCTACTACTTACTG	NA	False	NA	-3	True	AATAAA	-24	NA	23727675	23716843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_23717192_23719431_23719521_23719621_23719720_23722620_23722735_23724769_23724857_23726995_23727116_23727485
ENSMUSG00000031546.7_23716844_23727675_4	chr8	-	986	8	NNC	ENSMUSG00000031546.7	novel	1349	8	NA	NA	0	-212	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_7	221.432350198172	1194	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTCTACTACTTACTG	NA	False	NA	-3	True	AATAAA	-24	NA	23727675	23716843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_23717192_23717264_23717356_23719431_23719521_23719621_23719720_23722620_23722735_23724769_23724857_23726995_23727116_23727636
ENSMUSG00000031546.7_23721876_23727675_1	chr8	-	1256	4	ISM	ENSMUSG00000031546.7	ENSMUST00000033950.7	1349	8	0	5244	0	-5244	5prime_fragment	FALSE	canonical	3	623	junction_1	21.7613316585993	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGACTGAGCCATTAAGAG	NA	False	NA	NA	False	NA	NA	NA	23727675	23721875	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_23722735_23724769_23724857_23726995_23727116_23727485
ENSMUSG00000031557.17_25532083_25591787_1	chr8	-	2022	12	FSM	ENSMUSG00000031557.17	ENSMUST00000128715.8	3463	12	214	1227	0	877	multi-exon	FALSE	canonical	0	0	junction_11	42.7701912106826	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTCGTCCTCTTGATGC	5825	False	NA	NA	False	ATTAAA	-23	NA	25591787	25532082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25591675
ENSMUSG00000031561.17_48788228_48794117_1	chr8	-	711	2	ISM	ENSMUSG00000031561.17	ENSMUST00000110346.9	2267	10	214231	0	-40983	0	3prime_fragment	FALSE	canonical	3	58	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCATTTTGGTCAGCTG	NA	False	NA	NA	False	CATAAA	-39	NA	48794117	48788227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_48788810_48793988
ENSMUSG00000031562.16_48563200_48590562_1	chr8	+	622	4	FSM	ENSMUSG00000031562.17	ENSMUST00000173991.8	786	4	0	164	0	-164	multi-exon	FALSE	canonical	3	319	junction_1	45.0209827623619	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTATTTCTCGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	48563199	48590562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292
ENSMUSG00000031562.16_48563200_48591626_1	chr8	+	882	5	ISM	ENSMUSG00000031562.17	ENSMUST00000174818.9	2493	6	3	3072	0	0	5prime_fragment	FALSE	canonical	3	18	junction_4	162.647625251646	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGACTGGAAGGTGGCT	NA	False	NA	NA	False	AATAAA	-20	NA	48563199	48591626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591213
ENSMUSG00000031562.16_48563200_48591626_2	chr8	+	1686	4	FSM	ENSMUSG00000031562.17	ENSMUST00000173991.8	786	4	0	-900	0	0	multi-exon	FALSE	canonical	3	319	junction_1	45.0209827623619	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGACTGGAAGGTGGCT	NA	False	NA	NA	False	AATAAA	-20	NA	48563199	48591626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292
ENSMUSG00000031562.16_48563200_48594700_1	chr8	+	1792	5	NIC	ENSMUSG00000031562.17	novel	2096	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_4	165.171123384204	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	10	True	ATTAAA	-16	NA	48563199	48594700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48593377
ENSMUSG00000031562.16_48563200_48594700_2	chr8	+	1889	6	FSM	ENSMUSG00000031562.17	ENSMUST00000170263.10	2096	6	207	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	42.4480859403578	1302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	10	True	ATTAAA	-16	NA	48563199	48594700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
ENSMUSG00000031562.16_48563438_48594700_1	chr8	+	1919	6	NIC	ENSMUSG00000031562.17	novel	1126	5	NA	NA	192	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_1	132.43775896624	1098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	10	True	ATTAAA	-16	NA	48563437	48594700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_48563552_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
ENSMUSG00000031562.16_48563461_48591626_1	chr8	+	889	5	FSM	ENSMUSG00000031562.17	ENSMUST00000098773.6	1126	5	237	0	215	0	multi-exon	FALSE	canonical	3	18	junction_4	189.227871889952	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGACTGGAAGGTGGCT	NA	False	NA	NA	False	AATAAA	-20	NA	48563460	48591626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_48563552_48564693_48564826_48565002_48565139_48590292_48590410_48591213
ENSMUSG00000031568.17_47986699_48003972_2	chr8	+	1021	7	NNC	ENSMUSG00000031568.17	novel	1371	8	NA	NA	0	-342	intron_retention	FALSE	canonical	0	0	junction_6	82.951793229562	958	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTCAGAGTACTTTCTG	NA	False	NA	11	True	AATAAA	-15	NA	47986698	48003972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_47986979_47990313_47990395_47995730_47995837_47995916_47996065_47997145_47997264_48000823_48000874_48003734
ENSMUSG00000031575.19_26306914_26330799_1	chr8	-	2401	16	FSM	ENSMUSG00000031575.19	ENSMUST00000068892.15	3307	16	16	890	-1	0	multi-exon	FALSE	canonical	3	230	junction_15	813.355748325008	3551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGCTTGTATGGTACTTG	NA	False	NA	-22	True	AATAAA	-9	NA	26330799	26306913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330609
ENSMUSG00000031575.19_26307348_26330799_1	chr8	-	1967	16	FSM	ENSMUSG00000031575.19	ENSMUST00000068892.15	3307	16	16	1324	-1	-334	multi-exon	FALSE	canonical	3	230	junction_15	813.355748325008	584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATGCTGCAGTACACTTT	NA	False	NA	-4	True	TATAAA	-19	NA	26330799	26307347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330609
ENSMUSG00000031575.19_26307348_26337722_1	chr8	-	1888	16	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	0	-334	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	856.817792117372	4858	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATGCTGCAGTACACTTT	NA	False	NA	-4	True	TATAAA	-19	NA	26337722	26307347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_26307532_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
ENSMUSG00000031575.19_26307348_26337722_2	chr8	-	1891	16	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	0	-334	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	875.42445831849	4886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATGCTGCAGTACACTTT	NA	False	NA	-4	True	TATAAA	-19	NA	26337722	26307347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322758_26323774_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
ENSMUSG00000031576.17_26424727_26427846_1	chr8	+	377	2	NNC	ENSMUSG00000031576.17	novel	3536	27	NA	NA	23007	-115	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTGCCAGTTGCTTAG	NA	False	NA	NA	False	AATAAA	-16	NA	26424726	26427846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_26424781_26427523
ENSMUSG00000031576.17_26424727_26427962_1	chr8	+	493	2	NNC	ENSMUSG00000031576.17	novel	3536	27	NA	NA	23007	1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAAGTTCATTGCTCTCTT	NA	False	NA	NA	False	AATAAA	-21	NA	26424726	26427962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_26424781_26427523
ENSMUSG00000031577.11_31640368_31650117_1	chr8	+	2143	7	FSM	ENSMUSG00000031577.11	ENSMUST00000209851.2	3133	7	25	965	0	-965	multi-exon	FALSE	canonical	3	124	junction_5	19.2476549798208	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATCTCTTCTATTTGT	NA	False	NA	6	True	ATTAAA	-17	NA	31640367	31650117	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_31641528_31643536_31643724_31644241_31644335_31645541_31645730_31645805_31645950_31648620_31648784_31649909
ENSMUSG00000031577.11_31649491_31658792_1	chr8	+	1895	10	NNC	ENSMUSG00000031577.11	novel	5039	8	NA	NA	9123	4062	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2495	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTATCGCGAGAACGTCT	NA	False	NA	NA	False	NA	NA	NA	31649490	31658792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_31650606_31650786_31650853_31651749_31651864_31653058_31653127_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
ENSMUSG00000031577.11_31649491_31658792_2	chr8	+	1897	10	NNC	ENSMUSG00000031577.11	novel	5039	8	NA	NA	9123	4062	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2552	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTATCGCGAGAACGTCT	NA	False	NA	NA	False	NA	NA	NA	31649490	31658792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656462_31656550_31656661_31656737_31656788_31658692
ENSMUSG00000031578.6_31649491_31658792_1	chr8	-	1835	10	NNC	ENSMUSG00000031578.6	novel	1902	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	244.810634804904	1777	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGTCTTGAGAATTCTG	NA	False	NA	-2	True	TATAAA	-20	NA	31658792	31649490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656156_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
ENSMUSG00000031578.6_31649625_31658792_1	chr8	-	1768	10	FSM	ENSMUSG00000031578.6	ENSMUST00000033983.6	1902	10	0	134	0	-134	multi-exon	FALSE	canonical	3	742	junction_2	38.8285245790727	1041	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGCTCTAGCTCTACAT	NA	False	NA	-20	True	AATAAA	-15	NA	31658792	31649624	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
ENSMUSG00000031578.6_31650399_31658736_1	chr8	-	938	10	FSM	ENSMUSG00000031578.6	ENSMUST00000033983.6	1902	10	56	908	-6	-908	multi-exon	FALSE	canonical	3	742	junction_2	38.8285245790727	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGCTCTTGTGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	31658736	31650398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
ENSMUSG00000031584.17_34143765_34188191_1	chr8	+	2174	13	FSM	ENSMUSG00000031584.17	ENSMUST00000033992.9	2673	13	499	0	499	0	multi-exon	FALSE	canonical	3	1474	junction_4	147.314360580811	289	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCAGTGTATTTTC	901	False	NA	14	True	TATAAA	-17	NA	34143764	34188191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_34143808_34159180_34159208_34159920_34160010_34161550_34161621_34164114_34164263_34170290_34170346_34171492_34171593_34172620_34172708_34175571_34175731_34179368_34179481_34183826_34183959_34185026_34185161_34187173
ENSMUSG00000031585.14_34221861_34266993_1	chr8	+	1435	8	FSM	ENSMUSG00000031585.14	ENSMUST00000170705.8	1634	8	0	199	0	187	multi-exon	FALSE	canonical	3	438	junction_1	317.681974204855	1412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGTTTAAGAAGTTAGGAA	5025	False	NA	18	True	AATAAA	-15	NA	34221860	34266993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_34222017_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
ENSMUSG00000031585.14_34222070_34266993_1	chr8	+	1367	8	FSM	ENSMUSG00000031585.14	ENSMUST00000167264.8	1566	8	0	199	0	187	multi-exon	FALSE	canonical	3	804	junction_1	195.585463338633	2815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGTTTAAGAAGTTAGGAA	5234	False	NA	18	True	AATAAA	-15	NA	34222069	34266993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_34222158_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
ENSMUSG00000031585.14_34254819_34266993_1	chr8	+	683	3	NNC	ENSMUSG00000031585.14	novel	1634	8	NA	NA	-211	187	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	654.5	144	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGTTTAAGAAGTTAGGAA	NA	False	NA	18	True	AATAAA	-15	NA	34254818	34266993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_34254873_34265971_34266088_34266480
ENSMUSG00000031585.14_34254819_34267201_1	chr8	+	891	3	NNC	ENSMUSG00000031585.14	novel	1634	8	NA	NA	-211	0	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	654.5	983	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCTTTGTTTTAAAAAGC	NA	False	NA	18	True	AATAAA	-22	NA	34254818	34267201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_34254873_34265971_34266088_34266480
ENSMUSG00000031586.18_34274094_34319107_1	chr8	-	553	5	NNC	ENSMUSG00000031586.18	novel	643	6	NA	NA	14592	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	401.900796217176	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAATTTTAAGAAATGTGT	NA	False	NA	NA	False	AATAAA	-24	NA	34319107	34274093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_34274215_34279419_34279524_34285109_34285179_34296744_34296879_34318982
ENSMUSG00000031586.18_34293967_34419599_1	chr8	-	805	7	FSM	ENSMUSG00000031586.18	ENSMUST00000033995.14	1039	7	234	0	-179	0	multi-exon	FALSE	canonical	3	456	junction_1	404.856524654791	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTACAGCGTTTTTGGTT	NA	False	NA	-7	True	AATAAA	-36	NA	34419599	34293966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_34294211_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
ENSMUSG00000031590.9_41850496_41870125_1	chr8	-	1046	9	NNC	ENSMUSG00000031590.9	novel	1039	9	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	323.702795786505	7612	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGTTCTCGAGTCCTTT	NA	False	NA	-7	True	AATAAA	-23	NA	41870125	41850495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_41850682_41851992_41852104_41852601_41852694_41853798_41853904_41860681_41860797_41863300_41863359_41864259_41864386_41867839_41867904_41869936
ENSMUSG00000031591.15_41793698_41827683_1	chr8	-	2176	14	NNC	ENSMUSG00000031591.15	novel	2773	14	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_12	364.031811471626	3158	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGCAGTCATGCATGCTG	7628	False	NA	-21	True	AATAAA	-18	NA	41827683	41793697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807949_41813289_41813337_41827546
ENSMUSG00000031591.15_41793698_41827683_2	chr8	-	2182	14	FSM	ENSMUSG00000031591.15	ENSMUST00000034000.15	2773	14	127	464	-11	0	multi-exon	FALSE	canonical	3	999	junction_6	169.669117600863	3371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGCAGTCATGCATGCTG	7628	False	NA	-21	True	AATAAA	-18	NA	41827683	41793697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827546
ENSMUSG00000031591.15_41793829_41827683_1	chr8	-	2051	14	FSM	ENSMUSG00000031591.15	ENSMUST00000034000.15	2773	14	127	595	-11	-131	multi-exon	FALSE	canonical	3	999	junction_6	169.669117600863	2683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAACTTGTTCATCTTTCT	7628	False	NA	NA	False	NA	NA	NA	41827683	41793828	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827546
ENSMUSG00000031591.15_41794488_41827683_1	chr8	-	1392	14	FSM	ENSMUSG00000031591.15	ENSMUST00000034000.15	2773	14	127	1254	-11	-141	multi-exon	FALSE	canonical	3	999	junction_6	169.669117600863	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTGTTTGTTTGTT	7628	False	NA	-11	True	NA	NA	NA	41827683	41794487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827546
ENSMUSG00000031594.10_41644471_41662432_1	chr8	-	992	6	NNC	ENSMUSG00000031594.10	novel	1120	8	NA	NA	5758	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	3.55527776692624	192	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATGGCCATGGTAATTGT	NA	False	NA	NA	False	AATAAA	-33	NA	41662432	41644470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_41644718_41649994_41650183_41650350_41650440_41652688_41652787_41653481_41653642_41662222
ENSMUSG00000031594.10_41644471_41662772_1	chr8	-	821	6	ISM	ENSMUSG00000031594.10	ENSMUST00000034003.5	1120	8	5421	0	5418	0	3prime_fragment	FALSE	canonical	2	3	junction_5	4.67332857821917	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATGGCCATGGTAATTGT	NA	False	NA	NA	False	AATAAA	-33	NA	41662772	41644470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_41644718_41649994_41650183_41650350_41650440_41652688_41652787_41653481_41653642_41662733
ENSMUSG00000031600.12_40964824_40999587_1	chr8	+	1791	12	FSM	ENSMUSG00000031600.12	ENSMUST00000098817.4	6002	12	0	4211	0	3	multi-exon	FALSE	canonical	3	191	junction_7	12.6869491086687	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAGCTAATTTTTAATAT	NA	False	NA	16	True	ATTAAA	-16	NA	40964823	40999587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_40965275_40979967_40980043_40981358_40981474_40982149_40982251_40989910_40990137_40992350_40992422_40993719_40993848_40993929_40993989_40994065_40994135_40996850_40996995_40997984_40998066_40999316
ENSMUSG00000031601.17_40945583_40964345_1	chr8	-	2613	7	NNC	ENSMUSG00000031601.17	novel	2542	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	195.288177374418	235	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGGTTGTGACTGATGGC	NA	False	NA	-3	True	AATAAA	-21	NA	40964345	40945582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964130
ENSMUSG00000031604.11_65171173_65186615_1	chr8	-	1684	5	NIC	ENSMUSG00000031604.11	novel	2044	6	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	3	28	junction_3	300.648777645944	1105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGGTTCTGTTTTTTCC	NA	False	NA	-17	True	AATAAA	-1	NA	65186615	65171172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_65172216_65173375_65173531_65175497_65175625_65180657_65180943_65186541
ENSMUSG00000031604.11_65171173_65186615_2	chr8	-	1833	6	FSM	ENSMUSG00000031604.11	ENSMUST00000034015.11	2044	6	211	0	0	0	multi-exon	FALSE	canonical	3	690	junction_2	21.3822356174466	3220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGGTTCTGTTTTTTCC	NA	False	NA	-17	True	AATAAA	-1	NA	65186615	65171172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657_65180943_65186541
ENSMUSG00000031604.11_65176290_65186615_1	chr8	-	840	3	ISM	ENSMUSG00000031604.11	ENSMUST00000132013.2	2766	5	-3	5029	0	409	5prime_fragment	FALSE	canonical	3	705	junction_1	24.5	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCGGATCTTTTCTGAAG	NA	False	NA	NA	False	NA	NA	NA	65186615	65176289	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_65176771_65180657_65180943_65186541
ENSMUSG00000031608.14_57978735_58106037_1	chr8	-	2412	12	FSM	ENSMUSG00000031608.14	ENSMUST00000110316.3	3413	12	0	1001	0	323	multi-exon	FALSE	canonical	3	93	junction_6	28.2342620537355	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTGGAGTAAGCAGACTTT	NA	False	NA	37	True	NA	NA	NA	58106037	57978734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_57979286_57984635_57984765_57985661_57985761_57989616_57989836_57991119_57991243_57993053_57993172_57995868_57996052_57998362_57998443_57998702_57998834_58005477_58005645_58036800_58037262_58105886
ENSMUSG00000031622.17_73449913_73466534_1	chr8	+	1022	7	NNC	ENSMUSG00000031622.17	novel	1024	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	255.544788420521	4682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAGTTATGTGCAGCAGT	NA	False	NA	24	True	AATAAA	-21	NA	73449912	73466534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_73450041_73450677_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996_73466117_73466357
ENSMUSG00000031628.10_47070477_47092724_1	chr8	+	1472	8	NNC	ENSMUSG00000031628.10	novel	2601	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	90.2784807228869	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTATTTGAGGGTTTG	NA	False	NA	21	True	CATAAA	-17	NA	47070476	47092724	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953_47091181_47092158
ENSMUSG00000031628.10_47070477_47092724_2	chr8	+	2445	7	FSM	ENSMUSG00000031628.10	ENSMUST00000093517.7	1520	7	47	-972	0	0	multi-exon	FALSE	canonical	3	47	junction_1	80.3189821205977	933	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTATTTGAGGGTTTG	NA	False	NA	21	True	CATAAA	-17	NA	47070476	47092724	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_47070532_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
ENSMUSG00000031629.15_47005104_47015770_1	chr8	+	808	7	ISM	ENSMUSG00000031629.15	ENSMUST00000135432.8	3010	14	14	17272	0	-264	5prime_fragment	FALSE	canonical	3	36	junction_3	136.084532552381	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTTTAGAGCTTTGATCA	NA	False	NA	NA	False	AATAAA	-22	NA	47005103	47015770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_47005163_47007049_47007099_47008489_47008596_47009116_47009229_47012903_47013007_47014812_47014874_47015452
ENSMUSG00000031629.15_47005104_47016034_3	chr8	+	1072	7	ISM	ENSMUSG00000031629.15	ENSMUST00000135432.8	3010	14	14	17008	0	0	5prime_fragment	FALSE	canonical	3	36	junction_3	136.084532552381	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCCTTTTATTTTTGAG	NA	False	NA	21	True	NA	NA	NA	47005103	47016034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_47005163_47007049_47007099_47008489_47008596_47009116_47009229_47012903_47013007_47014812_47014874_47015452
ENSMUSG00000031629.15_47005104_47031669_1	chr8	+	1502	13	NIC	ENSMUSG00000031629.15	novel	2931	13	NA	NA	0	256	combination_of_known_junctions	FALSE	canonical	3	34	junction_5	79.2867510299728	748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAGCATAGAATGATCCT	NA	False	NA	6	True	AATAAA	-22	NA	47005103	47031669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014859_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
ENSMUSG00000031629.15_47005104_47031669_2	chr8	+	1623	14	FSM	ENSMUSG00000031629.15	ENSMUST00000135432.8	3010	14	14	1373	0	256	multi-exon	FALSE	canonical	3	36	junction_3	96.1013395100261	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAGCATAGAATGATCCT	NA	False	NA	6	True	AATAAA	-22	NA	47005103	47031669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_47005163_47007049_47007099_47008489_47008596_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
ENSMUSG00000031629.15_47005104_47031669_3	chr8	+	1510	13	NNC	ENSMUSG00000031629.15	novel	2931	13	NA	NA	0	256	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	88.2655400230212	505	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAGCATAGAATGATCCT	NA	False	NA	6	True	AATAAA	-22	NA	47005103	47031669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026474_47026516_47026883_47026946_47029260_47029418_47031289
ENSMUSG00000031629.15_47031632_47070253_1	chr8	+	2109	14	Fusion	ENSMUSG00000110270.2_ENSMUSG00000031629.15	novel	3010	14	NA	NA	5424	11255	multi-exon	FALSE	non_canonical	0	0	junction_1	0	195	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCCGGAGGGGGCGGGGC	NA	False	NA	NA	False	NA	NA	NA	47031631	47070253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr8_+_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
ENSMUSG00000031629.15_47031632_47070253_2	chr8	+	1875	13	Fusion	ENSMUSG00000110270.2_ENSMUSG00000031629.15	novel	2931	13	NA	NA	5424	11255	multi-exon	FALSE	non_canonical	0	0	junction_1	0	95	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCCGGAGGGGGCGGGGC	NA	False	NA	NA	False	NA	NA	NA	47031631	47070253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr8_+_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
ENSMUSG00000031631.16_46616729_46623583_2	chr8	+	1046	2	ISM	ENSMUSG00000031631.16	ENSMUST00000034048.13	4619	5	41	25044	0	106	5prime_fragment	FALSE	canonical	3	40	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACAGAGTTTTGCTCCAAA	NA	False	NA	NA	False	AAGAAA	-6	NA	46616728	46623583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_46616787_46622595
ENSMUSG00000031633.5_46660376_46661514_1	chr8	-	362	2	ISM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	2807	542	2553	-542	3prime_fragment	FALSE	canonical	3	7531	junction_1	0	6079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTCATTGAGTATTCATT	NA	False	NA	0	True	GATAAA	-32	NA	46661514	46660375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_46660658_46661434
ENSMUSG00000031633.5_46660376_46664067_1	chr8	-	1129	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	254	542	0	-542	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	16777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTCATTGAGTATTCATT	NA	False	NA	0	True	GATAAA	-32	NA	46664067	46660375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
ENSMUSG00000031633.5_46660493_46661514_1	chr8	-	245	2	ISM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	2807	659	2553	514	3prime_fragment	FALSE	canonical	3	7531	junction_1	0	748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCACAAGTTCACAGATCC	NA	False	NA	41	True	NA	NA	NA	46661514	46660492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_46660658_46661434
ENSMUSG00000031637.14_46449939_46452904_1	chr8	+	789	5	Fusion	ENSMUSG00000031637.14_ENSMUSG00000031634.14	novel	1603	9	NA	NA	1774	2909	multi-exon	FALSE	non_canonical	0	0	junction_1	0	559	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGTGCAGCCTGGAACC	NA	False	NA	NA	False	NA	NA	NA	46449938	46452904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr8_+_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452791
ENSMUSG00000031641.15_61940768_61956518_1	chr8	+	1099	5	FSM	ENSMUSG00000031641.15	ENSMUST00000034058.14	4309	5	0	3210	0	95	multi-exon	FALSE	canonical	3	156	junction_4	10.8483869768736	1127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGTTGCTAAGAGTATTT	2566	False	NA	16	True	ATTAAA	-16	NA	61940767	61956518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_61941025_61942973_61943095_61944578_61944713_61948101_61948237_61956066
ENSMUSG00000031651.6_43582844_43633311_2	chr8	-	1187	5	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38788	0	at_least_one_novel_splicesite	FALSE	canonical	2	21	junction_2	79.3504883412824	295	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	NA	False	NA	0	True	TATAAA	-19	NA	43633311	43582843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_43583726_43589312_43589411_43593679_43593776_43595725_43595759_43633233
ENSMUSG00000031651.6_43582844_43633311_4	chr8	-	1210	6	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38788	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_3	72.7532817129234	305	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	NA	False	NA	0	True	TATAAA	-19	NA	43633311	43582843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43593679_43593776_43595725_43595759_43633233
ENSMUSG00000031651.6_43582844_43633311_5	chr8	-	1441	7	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38788	0	at_least_one_novel_splicesite	FALSE	canonical	3	117	junction_6	46.881647676771	625	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	NA	False	NA	0	True	TATAAA	-19	NA	43633311	43582843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43595725_43595759_43633233
ENSMUSG00000031651.6_43583070_43633311_4	chr8	-	1215	7	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38788	0	at_least_one_novel_splicesite	FALSE	canonical	3	117	junction_6	46.881647676771	151	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCCCTCTCCCCAAAGAC	NA	False	NA	NA	False	NA	NA	NA	43633311	43583069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43595725_43595759_43633233
ENSMUSG00000031660.14_89058939_89088642_1	chr8	-	2193	17	FSM	ENSMUSG00000031660.14	ENSMUST00000034085.8	3625	17	180	1252	0	476	multi-exon	TRUE	canonical	3	463	junction_12	36.2439650148821	316	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCGCTGGTGTGTCAGCT	NA	False	NA	-5	True	AATAAA	-20	NA	89088642	89058938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_89059172_89059508_89059653_89060365_89060510_89060732_89060845_89063708_89063766_89066036_89066149_89069362_89069499_89070209_89070318_89071776_89071853_89072457_89072582_89073501_89073687_89078427_89078539_89081256_89081402_89084164_89084223_89084527_89084658_89088129_89088339_89088533
ENSMUSG00000031667.17_91850516_91860651_1	chr8	-	1756	10	FSM	ENSMUSG00000031667.17	ENSMUST00000125257.3	2079	10	4	319	0	-319	multi-exon	FALSE	canonical	3	258	junction_9	63.7020456287233	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGGAAAGTAATGCTCCT	NA	False	NA	-10	True	AATAAA	-26	NA	91860651	91850515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91860527
ENSMUSG00000031669.11_96360182_96370830_1	chr8	+	1560	3	FSM	ENSMUSG00000031669.11	ENSMUST00000034094.11	2519	3	101	858	0	-858	multi-exon	FALSE	canonical	3	97	junction_2	2	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGAGTCTATGATGTCAC	NA	False	NA	NA	False	NA	NA	NA	96360181	96370830	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_96360412_96364437_96364672_96369734
ENSMUSG00000031669.11_96360182_96371141_1	chr8	+	1871	3	FSM	ENSMUSG00000031669.11	ENSMUST00000034094.11	2519	3	101	547	0	-547	multi-exon	FALSE	canonical	3	97	junction_2	2	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTTTTCTTTAAAGAAAG	NA	False	NA	17	True	AATAAA	-17	NA	96360181	96371141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_96360412_96364437_96364672_96369734
ENSMUSG00000031671.12_96442543_96445638_1	chr8	+	727	3	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	211	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAAACTTTCTTTAGCAC	NA	False	NA	39	True	AATAAA	-26	NA	96442542	96445638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_96442592_96444820_96444964_96445103
ENSMUSG00000031672.9_96590762_96615029_1	chr8	-	2379	10	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	209.049406411469	2353	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGTCTGCTTTTCTACT	NA	False	NA	-4	True	AATAAA	-17	NA	96615029	96590761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_96591880_96593448_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598961_96601031_96601092_96602373_96602503_96604340_96604498_96614844
ENSMUSG00000031672.9_96590762_96615029_2	chr8	-	2384	10	FSM	ENSMUSG00000031672.9	ENSMUST00000034097.8	2530	10	146	0	-9	0	multi-exon	FALSE	canonical	3	353	junction_1	94.2456731822753	2945	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGTCTGCTTTTCTACT	NA	False	NA	-4	True	AATAAA	-17	NA	96615029	96590761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_96591880_96593448_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
ENSMUSG00000031672.9_96590762_96615029_3	chr8	-	2378	10	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	208.866133512341	2246	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGTCTGCTTTTCTACT	NA	False	NA	-4	True	AATAAA	-17	NA	96615029	96590761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_96591880_96593448_96593600_96596099_96596266_96597402_96597548_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
ENSMUSG00000031672.9_96597195_96615029_1	chr8	-	1157	7	ISM	ENSMUSG00000031672.9	ENSMUST00000034097.8	2530	10	146	6433	-9	-1095	5prime_fragment	FALSE	canonical	3	549	junction_6	35.5046945252784	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATGAAGGGGCTGGAGA	NA	False	NA	NA	False	AAGAAA	-13	NA	96615029	96597194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
ENSMUSG00000031683.17_79533199_79547769_1	chr8	-	2087	5	FSM	ENSMUSG00000031683.17	ENSMUST00000130325.8	3792	5	0	1705	0	-119	multi-exon	FALSE	canonical	3	636	junction_4	242.43865203387	7989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACTGTAGTCTCCTCGTG	NA	False	NA	-9	True	NA	NA	NA	79547769	79533198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79546615_79546715_79547676
ENSMUSG00000031683.17_79534666_79547769_1	chr8	-	521	4	FSM	ENSMUSG00000031683.17	ENSMUST00000051867.7	2107	4	0	1586	0	0	multi-exon	FALSE	canonical	3	383	junction_3	374.138417641861	3493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTATGTCTCAGTCTTT	NA	False	NA	-7	True	NA	NA	NA	79547769	79534665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79547676
ENSMUSG00000031683.17_79534666_79547769_2	chr8	-	620	5	FSM	ENSMUSG00000031683.17	ENSMUST00000130325.8	3792	5	0	3172	0	0	multi-exon	FALSE	canonical	3	636	junction_4	242.43865203387	6467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTATGTCTCAGTCTTT	NA	False	NA	-7	True	NA	NA	NA	79547769	79534665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79546615_79546715_79547676
ENSMUSG00000031697.13_86026261_86034699_1	chr8	+	1315	6	FSM	ENSMUSG00000031697.13	ENSMUST00000170141.3	1466	6	-57	208	0	0	multi-exon	FALSE	canonical	3	116	junction_1	361.716463545689	816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026260	86034699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_86026622_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUSG00000031697.13_86026261_86034699_2	chr8	+	1445	7	FSM	ENSMUSG00000031697.13	ENSMUST00000034132.13	1287	7	-159	1	0	0	multi-exon	FALSE	canonical	3	862	junction_2	81.7626986399598	4853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026260	86034699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUSG00000031697.13_86026552_86034699_1	chr8	+	860	5	NIC	ENSMUSG00000031697.13	novel	1466	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_1	431.436264122524	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026551	86034699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_86026622_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUSG00000031697.13_86026552_86034699_2	chr8	+	1148	7	NNC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	13	junction_6	378.675506058801	1259	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026551	86034699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034220
ENSMUSG00000031697.13_86026552_86034699_3	chr8	+	990	6	NIC	ENSMUSG00000031697.13	novel	1041	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	109	junction_2	378.03089820807	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026551	86034699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_86026622_86027737_86027868_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUSG00000031697.13_86026552_86034699_4	chr8	+	1154	7	FSM	ENSMUSG00000031697.13	ENSMUST00000034132.13	1287	7	132	1	0	0	multi-exon	FALSE	canonical	3	862	junction_2	81.7626986399598	4061	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026551	86034699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUSG00000031697.13_86026552_86034699_5	chr8	+	1024	6	FSM	ENSMUSG00000031697.13	ENSMUST00000170141.3	1466	6	234	208	0	0	multi-exon	FALSE	canonical	3	116	junction_1	361.716463545689	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026551	86034699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_86026622_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUSG00000031697.13_86026552_86034699_6	chr8	+	1149	7	NNC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_1	368.735414024142	2869	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026551	86034699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_86026622_86027742_86027868_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUSG00000031700.12_86219205_86229929_1	chr8	+	415	3	ISM	ENSMUSG00000031700.12	ENSMUST00000132932.8	3229	11	-31	21534	0	9993	5prime_fragment	FALSE	canonical	0	0	junction_1	485	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTGGGGATGCCCATGC	NA	False	NA	NA	False	NA	NA	NA	86219204	86229929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_86219319_86219533_86219799_86229893
ENSMUSG00000031701.7_86265258_86281973_1	chr8	-	1920	9	NNC	ENSMUSG00000031701.7	novel	2919	9	NA	NA	0	-996	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	265.550842589512	2148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTCTGTGTCACATTTTT	NA	False	NA	-4	True	AATAAA	-17	NA	86281973	86265257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280033_86280541_86280606_86281798
ENSMUSG00000031701.7_86265258_86281973_2	chr8	-	1923	9	FSM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	0	996	0	-996	multi-exon	FALSE	canonical	3	694	junction_1	52.4486355875918	3400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTCTGTGTCACATTTTT	NA	False	NA	-4	True	AATAAA	-17	NA	86281973	86265257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
ENSMUSG00000031701.7_86265258_86281973_3	chr8	-	1918	9	NNC	ENSMUSG00000031701.7	novel	2919	9	NA	NA	0	-996	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	268.213272182791	2997	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTCTGTGTCACATTTTT	NA	False	NA	-4	True	AATAAA	-17	NA	86281973	86265257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273334_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
ENSMUSG00000031701.7_86265258_86281973_4	chr8	-	1914	9	NNC	ENSMUSG00000031701.7	novel	2919	9	NA	NA	0	-996	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_3	264.525046073146	2243	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTCTGTGTCACATTTTT	NA	False	NA	-4	True	AATAAA	-17	NA	86281973	86265257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_86266037_86266678_86266807_86266936_86267073_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
ENSMUSG00000031703.9_86445335_86567385_1	chr8	-	2013	18	FSM	ENSMUSG00000031703.9	ENSMUST00000034140.9	3306	18	165	1128	165	-1128	multi-exon	FALSE	canonical	1	110	junction_3	53.6212528231601	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTTTTAAGCACTTTGT	NA	False	NA	-13	True	AATAAA	-23	NA	86567385	86445334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_86445557_86449259_86449378_86452142_86452226_86452794_86452920_86459001_86459081_86462753_86462798_86464745_86464855_86466856_86467008_86490863_86491037_86493586_86493682_86502768_86502851_86507144_86507207_86537173_86537269_86557811_86557887_86561649_86561708_86562974_86563121_86565556_86565630_86567162
ENSMUSG00000031708.18_84298329_84321094_1	chr8	-	1049	11	NIC	ENSMUSG00000031708.18	novel	1120	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_9	1190.40285617937	1923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84321094	84298328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84301106_84301158_84320968
ENSMUSG00000031708.18_84298329_84321094_2	chr8	-	1141	13	NNC	ENSMUSG00000031708.18	novel	1158	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	1128.13115803182	12256	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84321094	84298328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299661_84299773_84299848_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
ENSMUSG00000031711.8_83490250_83500774_1	chr8	-	1569	8	FSM	ENSMUSG00000031711.8	ENSMUST00000211462.2	761	8	-31	-777	0	0	multi-exon	FALSE	canonical	2	30	junction_6	164.077259054311	831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTTTGGTACTGAGTT	NA	False	NA	-17	True	AATAAA	-17	NA	83500774	83490249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83499508_83499641_83500685
ENSMUSG00000031711.8_83490250_83500774_2	chr8	-	1650	9	NNC	ENSMUSG00000031711.8	novel	1675	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	168.735693838026	2656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTTTGGTACTGAGTT	NA	False	NA	-17	True	AATAAA	-17	NA	83500774	83490249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497511_83499508_83499641_83500685
ENSMUSG00000031711.8_83490250_83500774_3	chr8	-	1234	6	NNC	ENSMUSG00000031711.8	novel	1675	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	198.198486371617	638	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTTTGGTACTGAGTT	NA	False	NA	-17	True	AATAAA	-17	NA	83500774	83490249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_83491095_83495951_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
ENSMUSG00000031711.8_83490250_83500774_4	chr8	-	1640	9	NIC	ENSMUSG00000031711.8	novel	1675	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	168.735693838026	2785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTTTGGTACTGAGTT	NA	False	NA	-17	True	AATAAA	-17	NA	83500774	83490249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83499508_83499641_83500685
ENSMUSG00000031711.8_83490250_83500774_5	chr8	-	1666	9	NNC	ENSMUSG00000031711.8	novel	1675	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	168.735693838026	2857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTTTGGTACTGAGTT	NA	False	NA	-17	True	AATAAA	-17	NA	83500774	83490249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83499482_83499641_83500685
ENSMUSG00000031711.8_83490594_83500774_1	chr8	-	1316	10	FSM	ENSMUSG00000031711.8	ENSMUST00000034147.4	1675	10	15	344	0	-344	multi-exon	FALSE	canonical	3	422	junction_3	43.069567612422	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAGGAAATATATTTAT	NA	False	NA	NA	False	AATAAA	-17	NA	83500774	83490593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
ENSMUSG00000031714.10_81515697_81585874_1	chr8	-	599	4	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	21251	2494	at_least_one_novel_splicesite	FALSE	canonical	3	454	junction_3	12.9614813968157	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTCTGAGACAGACTGCA	NA	False	NA	NA	False	NA	NA	NA	81585874	81515696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_81515724_81518017_81518244_81526729_81527025_81585823
ENSMUSG00000031715.15_81426572_81432122_1	chr8	-	1673	5	ISM	ENSMUSG00000031715.15	ENSMUST00000043359.9	6113	24	34004	1436	5368	-1436	3prime_fragment	FALSE	canonical	3	1419	junction_2	118.560902071467	316	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTTTTCTTTCCATTT	NA	False	NA	-1	True	AATAAA	-41	NA	81432122	81426571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_81427758_81428756_81428865_81431233_81431447_81431847_81431967_81432075
ENSMUSG00000031715.15_81427464_81432122_1	chr8	-	781	5	ISM	ENSMUSG00000031715.15	ENSMUST00000043359.9	6113	24	34004	2328	5368	-2328	3prime_fragment	FALSE	canonical	3	1419	junction_2	118.560902071467	251	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATTTGATTTATTTT	NA	False	NA	-17	True	AATAAA	-23	NA	81432122	81427463	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_81427758_81428756_81428865_81431233_81431447_81431847_81431967_81432075
ENSMUSG00000031729.7_110397957_110419912_1	chr8	-	2279	9	NNC	ENSMUSG00000031729.7	novel	2304	10	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	212.348144270205	657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGTGTTGGTCAAATGAG	NA	False	NA	-13	True	AATAAA	-20	NA	110419912	110397956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_110399274_110403385_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
ENSMUSG00000031750.16_111468461_111482655_1	chr8	-	1802	7	NNC	ENSMUSG00000031750.16	novel	1709	7	NA	NA	-13325	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_6	7.54247233265651	194	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGATGGTGAACCTGGA	NA	False	NA	-12	True	ATTAAA	-27	NA	111482655	111468460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_111469081_111469275_111469412_111474874_111475037_111475294_111475373_111476056_111476191_111481862_111482283_111482403
ENSMUSG00000031750.16_111468472_111482544_1	chr8	-	1680	7	NNC	ENSMUSG00000031750.16	novel	1709	7	NA	NA	-13214	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_6	7.54247233265651	182	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCTTGCATCTCTGATG	NA	False	NA	-23	True	ATTAAA	-16	NA	111482544	111468471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_111469081_111469275_111469412_111474874_111475037_111475294_111475373_111476056_111476191_111481862_111482283_111482403
ENSMUSG00000031753.17_111537124_111573413_1	chr8	+	4277	26	NIC	ENSMUSG00000031753.17	novel	2442	19	NA	NA	-36108	-3492	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCTTCGGGTGCCGCGCG	105	False	NA	NA	False	NA	NA	NA	111537123	111573413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573306
ENSMUSG00000031753.17_111568527_111573413_1	chr8	+	620	4	NIC	ENSMUSG00000031753.17	novel	2442	19	NA	NA	-4705	-3492	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCTTCGGGTGCCGCGCG	4489	False	NA	NA	False	NA	NA	NA	111568526	111573413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_111568576_111569319_111569647_111571094_111571232_111573306
ENSMUSG00000031754.11_94746033_94763642_1	chr8	-	1072	7	NNC	ENSMUSG00000031754.11	novel	5010	7	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	862.075547733492	11146	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCGAGGATCCTTTTTTC	NA	False	NA	NA	False	ATTAAA	-16	NA	94763642	94746032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_94746333_94749402_94749506_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763404
ENSMUSG00000031754.11_94746033_94763642_2	chr8	-	1077	7	NNC	ENSMUSG00000031754.11	novel	5010	7	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	862.075547733492	11451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCGAGGATCCTTTTTTC	NA	False	NA	NA	False	ATTAAA	-16	NA	94763642	94746032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_94746333_94749402_94749506_94751164_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763404
ENSMUSG00000031754.11_94746076_94763328_1	chr8	-	878	7	FSM	ENSMUSG00000031754.11	ENSMUST00000212981.2	1184	7	306	0	306	0	multi-exon	FALSE	canonical	3	3	junction_6	876.397677363929	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTTTTTTAAGTTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	94763328	94746075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763253
ENSMUSG00000031755.7_94794582_94796851_1	chr8	-	691	2	FSM	ENSMUSG00000031755.7	ENSMUST00000170208.2	491	2	-10	-190	-10	0	multi-exon	FALSE	canonical	3	32	junction_1	0	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTTGTTGTTTATAAATT	5620	False	NA	-3	True	AATAAA	-15	NA	94796851	94794581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_94795011_94796589
ENSMUSG00000031756.6_117648469_117662175_1	chr8	+	1230	9	NNC	ENSMUSG00000031756.6	novel	1768	12	NA	NA	0	2323	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_8	92.9620218153629	69	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTTTACTTTTATTGTT	NA	False	NA	NA	False	AAAAAG	-6	NA	117648468	117662175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_117648523_117649066_117649181_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117661756
ENSMUSG00000031760.10_94879374_94880776_1	chr8	+	399	3	FSM	ENSMUSG00000031760.10	ENSMUST00000034211.10	536	3	139	-2	0	2	multi-exon	FALSE	canonical	3	14	junction_2	1	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAAGACTGGTCTCTTTTT	NA	False	NA	9	True	AATAAA	-19	NA	94879373	94880776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_94879459_94879652_94879719_94880528
ENSMUSG00000031762.8_94899488_94900196_1	chr8	+	315	3	FSM	ENSMUSG00000031762.8	ENSMUST00000034214.8	511	3	196	0	0	0	multi-exon	FALSE	canonical	3	13494	junction_2	132	10759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTCTCTGTGCATTGGT	NA	False	NA	37	True	AATAAA	-23	NA	94899487	94900196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_94899504_94899754_94899821_94899963
ENSMUSG00000031765.9_94905869_94906955_1	chr8	+	390	3	FSM	ENSMUSG00000031765.9	ENSMUST00000034215.8	549	3	159	0	0	0	multi-exon	FALSE	canonical	3	14682	junction_2	74.5	161946	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	False	NA	29	True	AATAAA	-18	NA	94905868	94906955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_94905967_94906450_94906517_94906729
ENSMUSG00000031774.9_95301568_95328212_1	chr8	-	1561	7	NIC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	-33	717	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	218.907451271587	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	4003	False	NA	-4	True	AATAAA	-23	NA	95328212	95301567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95328124
ENSMUSG00000031774.9_95301568_95328329_1	chr8	-	1637	8	NIC	ENSMUSG00000031774.9	novel	828	9	NA	NA	0	717	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	220.053796762037	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3886	False	NA	-4	True	AATAAA	-23	NA	95328329	95301567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328262
ENSMUSG00000031774.9_95301568_95328329_2	chr8	-	1671	9	NNC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	0	717	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	197.424036023986	264	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3886	False	NA	-4	True	AATAAA	-23	NA	95328329	95301567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313958_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124_95328213_95328309
ENSMUSG00000031774.9_95301568_95328329_3	chr8	-	1768	8	NNC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	0	717	intron_retention	FALSE	non_canonical	0	0	junction_3	171.915855070118	799	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3886	False	NA	-4	True	AATAAA	-23	NA	95328329	95301567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313958_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124
ENSMUSG00000031774.9_95301568_95328329_4	chr8	-	1678	7	NIC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	0	717	intron_retention	FALSE	canonical	0	0	junction_3	218.907451271587	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3886	False	NA	-4	True	AATAAA	-23	NA	95328329	95301567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95328124
ENSMUSG00000031774.9_95301568_95328329_5	chr8	-	1678	9	NIC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	0	717	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	197.424036023986	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3886	False	NA	-4	True	AATAAA	-23	NA	95328329	95301567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124_95328213_95328309
ENSMUSG00000031774.9_95301568_95328329_6	chr8	-	1775	8	FSM	ENSMUSG00000031774.9	ENSMUST00000034226.8	2873	8	296	802	0	717	multi-exon	FALSE	canonical	0	0	junction_3	171.915855070118	1069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3886	False	NA	-4	True	AATAAA	-23	NA	95328329	95301567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124
ENSMUSG00000031774.9_95302125_95328329_1	chr8	-	1121	7	NIC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	0	160	intron_retention	FALSE	canonical	0	0	junction_3	218.907451271587	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGGCTCAAACTCGGCT	3886	False	NA	-16	True	NA	NA	NA	95328329	95302124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95328124
ENSMUSG00000031774.9_95302125_95328329_2	chr8	-	1121	9	NIC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	0	160	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	197.424036023986	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGGCTCAAACTCGGCT	3886	False	NA	-16	True	NA	NA	NA	95328329	95302124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124_95328213_95328309
ENSMUSG00000031774.9_95302125_95328329_3	chr8	-	1211	8	NNC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	0	160	intron_retention	FALSE	non_canonical	0	0	junction_3	171.915855070118	81	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGGCTCAAACTCGGCT	3886	False	NA	-16	True	NA	NA	NA	95328329	95302124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313958_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124
ENSMUSG00000031774.9_95302125_95328329_4	chr8	-	1218	8	FSM	ENSMUSG00000031774.9	ENSMUST00000034226.8	2873	8	296	1359	0	160	multi-exon	FALSE	canonical	0	0	junction_3	171.915855070118	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGGCTCAAACTCGGCT	3886	False	NA	-16	True	NA	NA	NA	95328329	95302124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124
ENSMUSG00000031774.9_95302125_95328329_5	chr8	-	1080	8	NIC	ENSMUSG00000031774.9	novel	828	9	NA	NA	0	160	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	220.053796762037	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGGCTCAAACTCGGCT	3886	False	NA	-16	True	NA	NA	NA	95328329	95302124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328262
ENSMUSG00000031775.6_95402069_95422906_1	chr8	-	1379	4	FSM	ENSMUSG00000031775.6	ENSMUST00000034227.6	1926	4	0	547	0	270	multi-exon	FALSE	canonical	2	4	junction_3	2.16024689946929	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTTATCATTCCTGGTCT	417	False	NA	3	True	AATAAA	-23	NA	95422906	95402068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_95402908_95403853_95403977_95405972_95406147_95422663
ENSMUSG00000031776.18_95393351_95399917_1	chr8	+	804	6	FSM	ENSMUSG00000031776.18	ENSMUST00000034228.16	2063	6	123	1136	0	0	multi-exon	FALSE	canonical	3	229	junction_5	11.4612390255155	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCCAGAAACTCCTTCC	NA	False	NA	NA	False	AAAACA	-19	NA	95393350	95399917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_95393530_95394224_95394287_95396948_95397056_95397922_95398009_95398689_95398787_95399644
ENSMUSG00000031776.18_95393351_95401053_1	chr8	+	1940	6	FSM	ENSMUSG00000031776.18	ENSMUST00000034228.16	2063	6	123	0	0	0	multi-exon	FALSE	canonical	3	229	junction_5	11.4612390255155	888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTGATGTGCATTGTCC	NA	False	NA	12	True	AGTAAA	-25	NA	95393350	95401053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_95393530_95394224_95394287_95396948_95397056_95397922_95398009_95398689_95398787_95399644
ENSMUSG00000031776.18_95393492_95401053_1	chr8	+	1799	6	FSM	ENSMUSG00000031776.18	ENSMUST00000034228.16	2063	6	264	0	0	0	multi-exon	FALSE	canonical	3	229	junction_5	11.4612390255155	878	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTGATGTGCATTGTCC	NA	False	NA	12	True	AGTAAA	-25	NA	95393491	95401053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_95393530_95394224_95394287_95396948_95397056_95397922_95398009_95398689_95398787_95399644
ENSMUSG00000031781.15_95549189_95559330_1	chr8	-	1503	8	NNC	ENSMUSG00000031781.15	novel	1807	9	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	609.086535857808	2708	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTTACTGTGAGTGTG	NA	False	NA	-14	True	ATTAAA	-19	NA	95559330	95549188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555775_95555859_95558400_95558554_95559142
ENSMUSG00000031781.15_95549189_95559330_2	chr8	-	1487	8	NNC	ENSMUSG00000031781.15	novel	1807	9	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	612.777217565525	1680	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTTACTGTGAGTGTG	NA	False	NA	-14	True	ATTAAA	-19	NA	95559330	95549188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_95549836_95550280_95550360_95551853_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142
ENSMUSG00000031781.15_95549189_95564915_1	chr8	-	1523	9	NNC	ENSMUSG00000031781.15	novel	4359	9	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	575.655916650737	4640	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTTACTGTGAGTGTG	NA	False	NA	-14	True	ATTAAA	-19	NA	95564915	95549188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_95549836_95550288_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564879
ENSMUSG00000031781.15_95549189_95564915_2	chr8	-	1497	9	NNC	ENSMUSG00000031781.15	novel	4359	9	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_7	543.20023932248	1532	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTTACTGTGAGTGTG	NA	False	NA	-14	True	ATTAAA	-19	NA	95564915	95549188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559176_95559329_95564879
ENSMUSG00000031781.15_95549189_95564915_3	chr8	-	1521	9	NNC	ENSMUSG00000031781.15	novel	4359	9	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	2	28	junction_8	565.262535796421	5391	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTTACTGTGAGTGTG	NA	False	NA	-14	True	ATTAAA	-19	NA	95564915	95549188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559319_95564879
ENSMUSG00000031783.11_95584146_95590539_1	chr8	+	1301	8	NIC	ENSMUSG00000031783.11	novel	1580	9	NA	NA	0	170	intron_retention	FALSE	canonical	3	1933	junction_5	89.830679728076	1793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATGCGTCATCGTGCCA	NA	False	NA	27	True	AATAAA	-18	NA	95584145	95590539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589513_95590079
ENSMUSG00000031783.11_95584146_95590539_2	chr8	+	1174	9	NNC	ENSMUSG00000031783.11	novel	1580	9	NA	NA	0	170	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	672.612990043309	12833	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATGCGTCATCGTGCCA	NA	False	NA	27	True	AATAAA	-18	NA	95584145	95590539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589318_95589444_95589513_95590079
ENSMUSG00000031783.11_95584146_95590539_3	chr8	+	1168	9	NNC	ENSMUSG00000031783.11	novel	1580	9	NA	NA	0	170	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	671.977864218755	11401	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATGCGTCATCGTGCCA	NA	False	NA	27	True	AATAAA	-18	NA	95584145	95590539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_95584270_95584374_95584412_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589318_95589437_95589513_95590079
ENSMUSG00000031783.11_95584260_95590539_1	chr8	+	1067	9	FSM	ENSMUSG00000031783.11	ENSMUST00000109521.4	1580	9	182	331	0	170	multi-exon	FALSE	canonical	3	1933	junction_5	86.4056566435323	1276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATGCGTCATCGTGCCA	NA	False	NA	27	True	AATAAA	-18	NA	95584259	95590539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589318_95589437_95589513_95590079
ENSMUSG00000031785.17_95703931_95740824_1	chr8	+	966	4	NNC	ENSMUSG00000031785.17	novel	3011	15	NA	NA	194	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	42.2084772949174	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGAGAGTTGCCCGTCT	875	False	NA	25	True	AATAAA	-38	NA	95703930	95740824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_95704046_95729066_95729142_95729878_95729986_95740155
ENSMUSG00000031787.9_95807814_95825687_1	chr8	+	2625	20	FSM	ENSMUSG00000031787.9	ENSMUST00000034239.9	3777	20	0	1152	0	-1152	multi-exon	FALSE	canonical	3	123	junction_1	16.4357221924964	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCCTTATGAGAGGAATAT	809	False	NA	14	True	ATTAAA	-18	NA	95807813	95825687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_95807933_95809225_95809522_95813915_95814047_95816587_95816706_95820143_95820245_95820541_95820584_95821107_95821192_95821347_95821464_95821800_95821873_95821979_95822131_95822233_95822425_95822516_95822648_95822983_95823035_95823839_95823917_95824026_95824147_95824242_95824393_95824582_95824660_95824733_95824809_95824946_95825064_95825281
ENSMUSG00000031792.16_96058931_96060416_1	chr8	+	584	2	ISM	ENSMUSG00000031792.16	ENSMUST00000145060.2	871	5	-22	10493	0	-4870	5prime_fragment	FALSE	canonical	3	234	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGCTCTGATTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	96058930	96060416	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_96059094_96059995
ENSMUSG00000031792.16_96058931_96074137_1	chr8	+	1720	7	NNC	ENSMUSG00000031792.16	novel	1758	7	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	68.6601938696813	424	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTGTCTTATTTTAAAC	NA	False	NA	14	True	AATAAA	-15	NA	96058930	96074137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_96059094_96059995_96060163_96065261_96065446_96069770_96069804_96070584_96070691_96071916_96072001_96073154
ENSMUSG00000031792.16_96058931_96074137_2	chr8	+	1722	7	NIC	ENSMUSG00000031792.16	novel	1758	7	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	78.3212756677406	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTGTCTTATTTTAAAC	NA	False	NA	14	True	AATAAA	-15	NA	96058930	96074137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_96059075_96059995_96060163_96065261_96065446_96069749_96069804_96070584_96070691_96071916_96072001_96073154
ENSMUSG00000031796.8_96146877_96161430_1	chr8	-	1222	6	NNC	ENSMUSG00000031796.8	novel	1295	6	NA	NA	-6	0	intron_retention	FALSE	canonical	0	0	junction_2	202.846345789122	2514	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTTTACTTTTTTATA	NA	False	NA	-6	True	AATAAA	-24	NA	96161430	96146876	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_96147298_96147763_96147875_96148691_96148875_96149410_96149523_96151244_96151325_96161115
ENSMUSG00000031796.8_96146877_96161430_2	chr8	-	1148	5	FSM	ENSMUSG00000031796.8	ENSMUST00000212684.2	1023	5	28	-153	-6	0	multi-exon	FALSE	canonical	3	46	junction_4	193.603977231874	1577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTTTACTTTTTTATA	NA	False	NA	-6	True	AATAAA	-24	NA	96161430	96146876	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149523_96161115
ENSMUSG00000031803.9_72143856_72154446_1	chr8	-	2612	3	FSM	ENSMUSG00000031803.9	ENSMUST00000034260.9	3055	3	-13	456	-13	-456	multi-exon	FALSE	canonical	3	105	junction_2	27	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCCGGTAATATTTCTGT	8508	False	NA	-5	True	NA	NA	NA	72154446	72143855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_72145800_72145960_72146544_72154361
ENSMUSG00000031803.9_72144363_72154446_1	chr8	-	2105	3	FSM	ENSMUSG00000031803.9	ENSMUST00000034260.9	3055	3	-13	963	-13	-963	multi-exon	FALSE	canonical	3	105	junction_2	27	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGGTAATGTTACTTTTAG	8508	False	NA	-19	True	NA	NA	NA	72154446	72144362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_72145800_72145960_72146544_72154361
ENSMUSG00000031807.11_72044935_72048913_1	chr8	+	778	5	FSM	ENSMUSG00000031807.11	ENSMUST00000034264.11	893	5	115	0	0	0	multi-exon	FALSE	canonical	3	546	junction_2	58.7132864009502	701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTTTCTGTGGTTCTT	NA	False	NA	15	True	ATTAAA	-15	NA	72044934	72048913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_72045149_72046727_72046836_72047312_72047415_72047704_72047846_72048700
ENSMUSG00000031812.17_122317216_122323751_1	chr8	+	655	4	NNC	ENSMUSG00000031812.17	novel	2532	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1112.54463081512	9183	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTGCCAATAAAAAGATCAA	9961	False	NA	-7	True	AATAAA	-19	NA	122317215	122323751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_122317304_122320228_122320285_122322724_122322832_122323347
ENSMUSG00000031812.17_122317216_122323751_2	chr8	+	661	4	NNC	ENSMUSG00000031812.17	novel	2532	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1180.44774932603	9251	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTGCCAATAAAAAGATCAA	9961	False	NA	-7	True	AATAAA	-19	NA	122317215	122323751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_122317304_122320235_122320285_122322724_122322832_122323334
ENSMUSG00000031812.17_122317216_122324785_3	chr8	+	1695	4	NNC	ENSMUSG00000031812.17	novel	2532	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1180.44774932603	10820	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGAGTGATGTCTCATTG	9961	False	NA	16	True	AATAAA	-16	NA	122317215	122324785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_122317304_122320235_122320285_122322724_122322832_122323334
ENSMUSG00000031813.9_71995566_72000670_1	chr8	+	1065	9	NNC	ENSMUSG00000031813.9	novel	1062	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	136.141413151913	3454	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGAGTGTATTGTTTT	NA	False	NA	11	True	AGTAAA	-18	NA	71995565	72000670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71995702_71995776_71995876_71996030_71996128_71997867_71997995_71998190_71998311_71998398_71998501_71999616_71999679_72000221_72000279_72000405
ENSMUSG00000031816.16_121824294_121835131_1	chr8	-	1356	10	FSM	ENSMUSG00000031816.16	ENSMUST00000133037.8	1060	10	0	-296	0	0	multi-exon	FALSE	canonical	3	29	junction_2	18.6494629717802	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGTATGTTTGTGTA	NA	False	NA	-9	True	NA	NA	NA	121835131	121824293	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_121824665_121825446_121825511_121825737_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121835026
ENSMUSG00000031816.16_121830591_121835027_1	chr8	-	715	5	NIC	ENSMUSG00000031816.16	novel	358	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	34.8595395838786	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCTGCGGCTTACAAAAA	NA	False	NA	NA	False	AATAAA	-30	NA	121835027	121830590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_121830920_121831130_121831298_121832312_121832427_121833608_121833713_121835026
ENSMUSG00000031816.16_121830591_121835131_1	chr8	-	819	5	NIC	ENSMUSG00000031816.16	novel	358	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	34.8595395838786	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCTGCGGCTTACAAAAA	NA	False	NA	NA	False	AATAAA	-30	NA	121835131	121830590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_121830920_121831130_121831298_121832312_121832427_121833608_121833713_121835026
ENSMUSG00000031816.16_121832122_121835066_1	chr8	-	449	3	ISM	ENSMUSG00000031816.16	ENSMUST00000128503.2	358	4	16	908	0	-908	5prime_fragment	FALSE	canonical	3	80	junction_1	3	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCTCCCATACAGCAGAG	NA	False	NA	NA	False	AAGAAA	-26	NA	121835066	121832121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_121832427_121833608_121833713_121835026
ENSMUSG00000031816.16_121832122_121835066_2	chr8	-	300	4	NNC	ENSMUSG00000031816.16	novel	8312	8	NA	NA	0	-908	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	34.4995974211616	96	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCTCCCATACAGCAGAG	NA	False	NA	NA	False	AAGAAA	-26	NA	121835066	121832121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_121832164_121832312_121832427_121833608_121833713_121835026
ENSMUSG00000031818.13_121395075_121400946_1	chr8	+	651	5	FSM	ENSMUSG00000031818.13	ENSMUST00000181586.8	765	5	114	0	0	0	multi-exon	FALSE	canonical	3	240	junction_1	3735.25865904893	20286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	28	True	AATAAA	-17	NA	121395074	121400946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_121395115_121396047_121396122_121399463_121399632_121399959_121400092_121400709
ENSMUSG00000031819.14_121384590_121394826_1	chr8	-	971	5	FSM	ENSMUSG00000031819.14	ENSMUST00000034277.14	4942	5	34	3937	0	0	multi-exon	FALSE	canonical	3	1135	junction_3	55.4301362076623	5097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCTTTTGTAATCCTGAG	NA	False	NA	-40	True	ATTAAA	-11	NA	121394826	121384589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_121384988_121385266_121385362_121385743_121385814_121387522_121387600_121394495
ENSMUSG00000031819.14_121390881_121400946_1	chr8	-	686	6	Genic_Genomic	ENSMUSG00000031819.14	novel	1863	7	NA	NA	-5634	-3495	multi-exon	FALSE	non_canonical	0	0	junction_1	0	104797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAGGCCACCCAGCTTTT	NA	False	NA	NA	False	NA	NA	NA	121400946	121390880	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_121390887_121395025_121395095_121396047_121396122_121399463_121399632_121399959_121400092_121400709
ENSMUSG00000031819.14_121395047_121400946_1	chr8	-	642	5	NNC	ENSMUSG00000031819.14	novel	1863	7	NA	NA	-5634	-7661	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6985	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGCTCGCGACCGGAAGAA	NA	False	NA	NA	False	NA	NA	NA	121400946	121395046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_121395095_121396047_121396105_121399463_121399632_121399959_121400092_121400709
ENSMUSG00000031819.14_121395047_121400946_2	chr8	-	662	5	NNC	ENSMUSG00000031819.14	novel	1863	7	NA	NA	-5634	-7661	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	24789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGCTCGCGACCGGAAGAA	NA	False	NA	NA	False	NA	NA	NA	121400946	121395046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_121395095_121396047_121396105_121399443_121399632_121399959_121400092_121400709
ENSMUSG00000031819.14_121395047_121400946_3	chr8	-	645	5	NNC	ENSMUSG00000031819.14	novel	1863	7	NA	NA	-5634	-7661	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	19505	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGCTCGCGACCGGAAGAA	NA	False	NA	NA	False	NA	NA	NA	121400946	121395046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_121395095_121396047_121396122_121399477_121399632_121399959_121400092_121400709
ENSMUSG00000031819.14_121395047_121400946_4	chr8	-	644	5	NNC	ENSMUSG00000031819.14	novel	1863	7	NA	NA	-5634	-7661	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2408	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGCTCGCGACCGGAAGAA	NA	False	NA	NA	False	NA	NA	NA	121400946	121395046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_121395091_121396047_121396122_121399467_121399625_121399959_121400092_121400709
ENSMUSG00000031819.14_121395047_121400946_5	chr8	-	651	5	NIC	ENSMUSG00000031819.14	novel	1863	7	NA	NA	-5634	-7661	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	9325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGCTCGCGACCGGAAGAA	NA	False	NA	NA	False	NA	NA	NA	121400946	121395046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_121395091_121396047_121396122_121399467_121399632_121399959_121400092_121400709
ENSMUSG00000031819.14_121395047_121400946_6	chr8	-	644	5	NNC	ENSMUSG00000031819.14	novel	1863	7	NA	NA	-5634	-7661	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	29251	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGCTCGCGACCGGAAGAA	NA	False	NA	NA	False	NA	NA	NA	121400946	121395046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_121395095_121396062_121396122_121399463_121399632_121399959_121400092_121400709
ENSMUSG00000031821.12_121308006_121315804_1	chr8	-	1122	6	NIC	ENSMUSG00000031821.12	novel	3900	5	NA	NA	-31	277	combination_of_known_junctions	FALSE	canonical	3	6	junction_4	542.881423517143	9807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACACTTAGAACGGGTTTA	NA	False	NA	88	True	AATACA	-15	NA	121315804	121308005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_121308551_121308820_121308948_121312831_121312932_121314194_121314290_121315463_121315579_121315664
ENSMUSG00000031821.12_121308006_121316043_1	chr8	-	1266	5	FSM	ENSMUSG00000031821.12	ENSMUST00000034278.6	3900	5	0	2634	0	277	multi-exon	FALSE	canonical	3	1091	junction_3	31.7125763696361	12092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACACTTAGAACGGGTTTA	NA	False	NA	88	True	AATACA	-15	NA	121316043	121308005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_121308551_121308820_121308948_121312831_121312932_121315463_121315579_121315664
ENSMUSG00000031821.12_121308119_121315804_1	chr8	-	914	5	FSM	ENSMUSG00000031821.12	ENSMUST00000034278.6	3900	5	239	2747	-31	164	multi-exon	FALSE	canonical	3	1091	junction_3	31.7125763696361	942	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGATTTAGGAAGATTTTA	NA	False	NA	-25	True	AAAAAG	-17	NA	121315804	121308118	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_121308551_121308820_121308948_121312831_121312932_121315463_121315579_121315664
ENSMUSG00000031822.21_121308006_121315804_1	chr8	+	1027	5	NIC	ENSMUSG00000031822.21	novel	7127	16	NA	NA	9938	7675	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	11901	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCGCCTCAGGCACTTCT	NA	False	NA	NA	False	NA	NA	NA	121308005	121315804	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_121308551_121308820_121308948_121312831_121312932_121315463_121315579_121315664
ENSMUSG00000031826.21_120637553_120668143_1	chr8	+	545	4	ISM	ENSMUSG00000031826.21	ENSMUST00000108988.9	3274	14	0	16156	0	0	5prime_fragment	FALSE	canonical	3	740	junction_3	442.529848334174	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGAAGAAGAAGCGGC	8827	False	NA	NA	False	NA	NA	NA	120637552	120668143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851
ENSMUSG00000031826.21_120677111_120684299_1	chr8	+	1620	6	ISM	ENSMUSG00000031826.21	ENSMUST00000108988.9	3274	14	39558	0	-1591	0	3prime_fragment	FALSE	canonical	3	1352	junction_1	66.3644483138374	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	4363	False	NA	39	True	AATAAA	-21	NA	120677110	120684299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
ENSMUSG00000031826.21_120681540_120684299_1	chr8	+	1177	3	ISM	ENSMUSG00000031826.21	ENSMUST00000108988.9	3274	14	43987	0	-1405	0	3prime_fragment	FALSE	canonical	3	1459	junction_2	25.5	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8792	False	NA	39	True	AATAAA	-21	NA	120681539	120684299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_120681673_120682936_120683003_120683321
ENSMUSG00000031831.7_120324714_120331945_1	chr8	+	3220	15	NIC	ENSMUSG00000031831.7	novel	2821	12	NA	NA	22740	6752	intron_retention	FALSE	non_canonical	0	0	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTTTTCCGGATCAGG	NA	False	NA	NA	False	NA	NA	NA	120324713	120331945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_120326243_120326319_120326458_120326554_120326730_120327172_120327311_120327399_120327536_120327689_120327762_120327849_120327968_120328054_120328172_120328280_120328520_120329569_120329644_120329728_120329819_120329888_120329987_120330119_120330205_120330978_120331118_120331873
ENSMUSG00000031834.16_71220820_71222032_1	chr8	-	934	3	FSM	ENSMUSG00000031834.16	ENSMUST00000146707.2	746	3	276	-464	0	0	multi-exon	FALSE	canonical	3	190	junction_1	3.5	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTCTTTGGGGACTGG	NA	False	NA	-8	True	NA	NA	NA	71222032	71220819	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71221542_71221705_71221877_71221991
ENSMUSG00000031835.17_120234895_120247045_1	chr8	-	1386	6	ISM	ENSMUSG00000031835.17	ENSMUST00000212601.2	6789	22	38399	0	-4463	0	3prime_fragment	FALSE	canonical	3	437	junction_5	32.5613267542955	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGCTGGCATGTGTCGT	NA	False	NA	-7	True	AATAAA	-14	NA	120247045	120234894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010
ENSMUSG00000031837.15_120181096_120199379_1	chr8	+	1272	9	ISM	ENSMUSG00000031837.15	ENSMUST00000098363.10	1976	13	7638	0	1925	0	3prime_fragment	FALSE	canonical	3	52	junction_2	2.75850956133924	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTGTCTCTGTCCCTTT	NA	False	NA	11	True	AATAAA	-19	NA	120181095	120199379	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_120181196_120189299_120189437_120191640_120191760_120191891_120191972_120194329_120194384_120195007_120195121_120197646_120197725_120198478_120198571_120198880
ENSMUSG00000031840.15_71211295_71213592_2	chr8	+	1107	5	NNC	ENSMUSG00000031840.15	novel	1442	5	NA	NA	2191	2269	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCCCGCGCCAATCACATG	NA	False	NA	NA	False	NA	NA	NA	71211294	71213592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71211671_71211754_71211884_71212036_71212241_71213013_71213185_71213365
ENSMUSG00000031840.15_71211295_71213592_4	chr8	+	943	5	NNC	ENSMUSG00000031840.15	novel	1442	5	NA	NA	2191	2269	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	468	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCCCGCGCCAATCACATG	NA	False	NA	NA	False	NA	NA	NA	71211294	71213592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71211671_71211754_71211884_71212036_71212114_71213050_71213185_71213365
ENSMUSG00000031840.15_71211295_71213592_5	chr8	+	973	5	NNC	ENSMUSG00000031840.15	novel	1442	5	NA	NA	2191	2269	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1885	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCCCGCGCCAATCACATG	NA	False	NA	NA	False	NA	NA	NA	71211294	71213592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71211671_71211761_71211884_71212036_71212114_71213013_71213185_71213365
ENSMUSG00000031848.16_71126029_71129660_1	chr8	+	535	2	ISM	ENSMUSG00000031848.16	ENSMUST00000146972.3	365	4	0	1106	0	-1106	5prime_fragment	FALSE	canonical	3	2963	junction_1	0	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTTAAAAGTAATGTCAA	NA	False	NA	NA	False	NA	NA	NA	71126028	71129660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_71126108_71129204
ENSMUSG00000031848.16_71126029_71131402_1	chr8	+	787	4	NNC	ENSMUSG00000031848.16	novel	925	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1636.13616656914	8078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTTCTTCTGCCTA	NA	False	NA	20	True	AATAAA	-20	NA	71126028	71131402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71126108_71130392_71130527_71130603_71130785_71131009
ENSMUSG00000031848.16_71126029_71131402_2	chr8	+	776	5	NIC	ENSMUSG00000031848.16	novel	925	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	230	junction_3	1354.46250870964	18349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTTCTTCTGCCTA	NA	False	NA	20	True	AATAAA	-20	NA	71126028	71131402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_71126108_71129204_71129247_71130427_71130509_71130603_71130785_71131009
ENSMUSG00000031848.16_71126029_71131402_3	chr8	+	785	4	NNC	ENSMUSG00000031848.16	novel	925	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1636.13616656914	7379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTTCTTCTGCCTA	NA	False	NA	20	True	AATAAA	-20	NA	71126028	71131402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71126141_71130427_71130527_71130603_71130785_71131009
ENSMUSG00000031848.16_71126029_71131402_4	chr8	+	799	5	NNC	ENSMUSG00000031848.16	novel	925	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1520.87063881186	29676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTTCTTCTGCCTA	NA	False	NA	20	True	AATAAA	-20	NA	71126028	71131402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71126108_71129204_71129247_71130427_71130527_71130603_71130790_71131009
ENSMUSG00000031848.16_71126029_71131402_5	chr8	+	776	4	NNC	ENSMUSG00000031848.16	novel	925	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1636.13616656914	6850	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTTCTTCTGCCTA	NA	False	NA	20	True	AATAAA	-20	NA	71126028	71131402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71126108_71130403_71130527_71130603_71130785_71131009
ENSMUSG00000031848.16_71126029_71131402_6	chr8	+	871	4	NIC	ENSMUSG00000031848.16	novel	925	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	2963	junction_1	305.690838738895	22975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTTCTTCTGCCTA	NA	False	NA	20	True	AATAAA	-20	NA	71126028	71131402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_71126108_71129204_71129247_71130427_71130785_71131009
ENSMUSG00000031848.16_71126029_71131402_7	chr8	+	773	5	NNC	ENSMUSG00000031848.16	novel	925	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1520.87063881186	15282	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTTCTTCTGCCTA	NA	False	NA	20	True	AATAAA	-20	NA	71126028	71131402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71126108_71129204_71129247_71130427_71130527_71130603_71130764_71131009
ENSMUSG00000031848.16_71126029_71131402_8	chr8	+	752	4	NIC	ENSMUSG00000031848.16	novel	925	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	158	junction_1	1562.13237453026	5189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTTCTTCTGCCTA	NA	False	NA	20	True	AATAAA	-20	NA	71126028	71131402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_71126108_71130427_71130527_71130603_71130785_71131009
ENSMUSG00000031851.15_126460972_126474736_1	chr8	+	887	5	FSM	ENSMUSG00000031851.15	ENSMUST00000034313.13	1155	5	30	238	0	0	multi-exon	FALSE	canonical	3	50	junction_2	22.4388056723169	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATGTTTGGGGCTGAGGA	NA	False	NA	-83	True	NA	NA	NA	126460971	126474736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126471974_126472185_126474436
ENSMUSG00000031851.15_126460972_126474851_1	chr8	+	1002	5	FSM	ENSMUSG00000031851.15	ENSMUST00000034313.13	1155	5	30	123	0	78	multi-exon	FALSE	canonical	3	50	junction_2	22.4388056723169	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTGGTTCTCTTCAATTA	NA	False	NA	32	True	NA	NA	NA	126460971	126474851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126471974_126472185_126474436
ENSMUSG00000031851.15_126460972_126474851_2	chr8	+	900	4	NNC	ENSMUSG00000031851.15	novel	1155	5	NA	NA	0	78	at_least_one_novel_splicesite	TRUE	canonical	2	2	junction_2	46.2913478836908	86	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTGGTTCTCTTCAATTA	NA	False	NA	32	True	NA	NA	NA	126460971	126474851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_126461089_126462806_126462965_126471974_126472185_126474436
ENSMUSG00000031851.15_126460972_126474974_1	chr8	+	1023	4	NNC	ENSMUSG00000031851.15	novel	1155	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	46.2913478836908	266	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGAGTCCTTGTGTGGG	NA	False	NA	23	True	AATAAA	-31	NA	126460971	126474974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_126461089_126462806_126462965_126471974_126472185_126474436
ENSMUSG00000031864.17_69246626_69280313_1	chr8	+	2407	17	FSM	ENSMUSG00000031864.17	ENSMUST00000034328.13	4201	17	45	1749	0	160	multi-exon	FALSE	canonical	3	438	junction_4	79.6960779696843	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTTTTAGTTTCAAGTA	NA	False	NA	30	True	AATAAA	-32	NA	69246625	69280313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928
ENSMUSG00000031865.17_83174495_83177099_1	chr6	+	919	5	ISM	ENSMUSG00000031865.17	ENSMUST00000113907.2	4205	26	11567	0	499	0	3prime_fragment	FALSE	canonical	3	464	junction_2	43.2319326424346	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTCTGTGTGGCTCTG	8546	False	NA	NA	False	ATTAAA	-16	NA	83174494	83177099	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_83174607_83174737_83174931_83175563_83175644_83176169_83176260_83176655
ENSMUSG00000031875.8_105067348_105074304_1	chr8	+	1472	6	NNC	ENSMUSG00000031875.8	novel	1616	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	15.7784663386528	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGAGTGCGCCTGACT	NA	False	NA	13	True	ATTAAA	-15	NA	105067347	105074304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_105067528_105070389_105070546_105071408_105071505_105071903_105072025_105073363_105073750_105073771
ENSMUSG00000031878.19_105237660_105261242_1	chr8	-	1707	18	NNC	ENSMUSG00000031878.19	novel	1735	19	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	185.532283912268	2505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3360	False	NA	NA	False	AATAAA	-19	NA	105261242	105237659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105256658_105256749_105257024_105257129_105261143
ENSMUSG00000031879.15_105366480_105368333_1	chr8	-	641	5	NNC	ENSMUSG00000031879.15	novel	639	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	327.680484618782	5525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCAGTATGCCTTAGCG	NA	False	NA	-10	True	AATAAA	-18	NA	105368333	105366479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_105366719_105367151_105367198_105367599_105367726_105367942_105368014_105368174
ENSMUSG00000031879.15_105366480_105368333_2	chr8	-	650	5	NNC	ENSMUSG00000031879.15	novel	639	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	327.680484618782	5853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCAGTATGCCTTAGCG	NA	False	NA	-10	True	AATAAA	-18	NA	105368333	105366479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_105366719_105367151_105367198_105367599_105367726_105367942_105368023_105368174
ENSMUSG00000031885.15_105897577_105944621_1	chr8	+	2643	6	FSM	ENSMUSG00000031885.15	ENSMUST00000109392.9	2891	6	256	-8	0	0	multi-exon	FALSE	canonical	3	129	junction_5	26.6578318698277	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATGACTCTTTATTGATA	4017	False	NA	82	True	ATTAAA	-22	NA	105897576	105944621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929211_105942535
ENSMUSG00000031887.14_105985202_105991241_1	chr8	-	1405	5	FSM	ENSMUSG00000031887.14	ENSMUST00000034359.10	1689	5	0	284	0	-284	multi-exon	FALSE	canonical	3	50	junction_4	9.66953980290686	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCGGAGATGCTGAGGTC	505	False	NA	-7	True	AATAAA	-19	NA	105991241	105985201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_105985928_105986068_105986262_105986341_105986620_105987153_105987313_105991192
ENSMUSG00000031889.10_105951838_105979389_1	chr8	+	2559	16	FSM	ENSMUSG00000031889.10	ENSMUST00000034361.10	2916	16	61	296	0	1	multi-exon	FALSE	canonical	3	239	junction_9	14.7126551724093	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACAGCCTCATCTTGTAT	NA	False	NA	NA	False	NA	NA	NA	105951837	105979389	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350_105977424_105978229
ENSMUSG00000031893.8_106571309_106578640_1	chr8	+	1825	14	NIC	ENSMUSG00000031893.8	novel	1993	14	NA	NA	16925	7328	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	642	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCAAGCAGCAGCGAGCAC	NA	False	NA	NA	False	NA	NA	NA	106571308	106578640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_106571628_106571705_106571811_106571891_106572069_106572796_106572854_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
ENSMUSG00000031893.8_106571309_106578640_2	chr8	+	1763	13	NNC	ENSMUSG00000031893.8	novel	1993	14	NA	NA	16925	7328	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	703	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCAAGCAGCAGCGAGCAC	NA	False	NA	NA	False	NA	NA	NA	106571308	106578640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_106571628_106571705_106571806_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
ENSMUSG00000031897.10_106662368_106663657_1	chr8	-	540	3	NNC	ENSMUSG00000031897.10	novel	554	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	123	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACAGAAGGCTGTGTCT	NA	False	NA	-8	True	AATAAA	-19	NA	106663657	106662367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_106662538_106662627_106662780_106663439
ENSMUSG00000031913.10_107757854_107772097_1	chr8	+	1888	11	FSM	ENSMUSG00000031913.10	ENSMUST00000034388.10	2178	11	0	290	0	-290	multi-exon	FALSE	canonical	3	173	junction_10	19.6532440070335	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAAGGAGTGGGAGCTGC	NA	False	NA	11	True	AATAAA	-20	NA	107757853	107772097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_107758124_107763268_107763381_107763474_107763623_107765559_107765622_107765721_107765842_107767505_107767663_107768823_107768973_107769245_107769328_107769543_107769764_107771086_107771228_107771670
ENSMUSG00000031916.18_107772921_107774841_1	chr8	-	1132	2	FSM	ENSMUSG00000078931.5	ENSMUST00000055316.10	1306	2	405	-231	405	231	multi-exon	FALSE	canonical	3	275	junction_1	0	611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTACTGGTAGCCACTT	NA	False	NA	NA	False	NA	NA	NA	107774841	107772920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_107773904_107774692
ENSMUSG00000031916.18_107772921_107774979_1	chr8	-	1270	2	FSM	ENSMUSG00000078931.5	ENSMUST00000055316.10	1306	2	267	-231	267	231	multi-exon	FALSE	canonical	3	275	junction_1	0	780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTACTGGTAGCCACTT	NA	False	NA	NA	False	NA	NA	NA	107774979	107772920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_107773904_107774692
ENSMUSG00000031916.18_107772921_107775654_1	chr8	-	1223	2	ISM	ENSMUSG00000031916.18	ENSMUST00000034391.4	2954	6	7662	-6	5235	0	3prime_fragment	FALSE	canonical	3	27	junction_1	0	412	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTACTGGTAGCCACTT	NA	False	NA	NA	False	NA	NA	NA	107775654	107772920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_107773904_107775414
ENSMUSG00000031917.13_107783538_107785298_1	chr8	+	742	5	FSM	ENSMUSG00000031917.13	ENSMUST00000034392.13	3036	5	29	2265	0	0	multi-exon	FALSE	canonical	3	714	junction_4	51.2688989544344	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTATAAGGCCAGCTCA	NA	False	NA	107	True	AAAACA	-38	NA	107783537	107785298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008
ENSMUSG00000031917.13_107783538_107785437_1	chr8	+	881	5	FSM	ENSMUSG00000031917.13	ENSMUST00000034392.13	3036	5	29	2126	0	139	multi-exon	FALSE	canonical	3	714	junction_4	51.2688989544344	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTGCGTCGTCTTTGT	NA	False	NA	7	True	AGTAAA	-17	NA	107783537	107785437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008
ENSMUSG00000031917.13_107783538_107785662_1	chr8	+	1107	5	NNC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	0	364	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	346.440831889083	6859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTTATTTCATATGTG	NA	False	NA	21	True	AATAAA	-15	NA	107783537	107785662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_107783623_107783724_107783817_107783908_107784044_107784678_107784820_107785008
ENSMUSG00000031917.13_107783538_107785662_2	chr8	+	1106	5	FSM	ENSMUSG00000031917.13	ENSMUST00000034392.13	3036	5	29	1901	0	364	multi-exon	FALSE	canonical	3	714	junction_4	51.2688989544344	7402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTTATTTCATATGTG	NA	False	NA	21	True	AATAAA	-15	NA	107783537	107785662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008
ENSMUSG00000031917.13_107783538_107785662_3	chr8	+	1199	4	NIC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	0	364	intron_retention	FALSE	canonical	3	714	junction_3	58.9594964549581	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTTATTTCATATGTG	NA	False	NA	21	True	AATAAA	-15	NA	107783537	107785662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_107783623_107783724_107784044_107784678_107784820_107785008
ENSMUSG00000031917.13_107783538_107787563_1	chr8	+	1915	6	NNC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	320.893377931051	7941	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTCTCCGTATCAACTCT	NA	False	NA	19	True	ATTAAA	-20	NA	107783537	107787563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008_107785997_107787088
ENSMUSG00000031919.7_107788108_107790366_1	chr8	-	407	2	ISM	ENSMUSG00000031919.7	ENSMUST00000034393.7	871	4	1910	0	1910	0	3prime_fragment	FALSE	canonical	1	1	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTTCTGCTGCTGATCA	NA	False	NA	NA	False	AATAAA	-20	NA	107790366	107788107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_107788457_107790308
ENSMUSG00000031922.13_13724743_13738376_1	chr9	-	953	7	ISM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	27	5653	27	0	5prime_fragment	FALSE	canonical	3	207	junction_3	26.5	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAAGT	NA	False	NA	NA	False	NA	NA	NA	13738376	13724742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
ENSMUSG00000031924.5_107877272_107910445_1	chr8	+	658	5	FSM	ENSMUSG00000031924.5	ENSMUST00000034400.5	4316	5	0	3658	0	-2177	multi-exon	FALSE	canonical	3	1441	junction_2	30.906107810593	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGTGTACGACCAGAGT	NA	False	NA	9	True	NA	NA	NA	107877271	107910445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_107877506_107896442_107896572_107897022_107897053_107906045_107906075_107910209
ENSMUSG00000031924.5_107877272_107910733_1	chr8	+	935	4	NNC	ENSMUSG00000031924.5	novel	4316	5	NA	NA	0	-1889	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	681.425140585686	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTTTGTCATTCATCA	NA	False	NA	38	True	AGTAAA	-20	NA	107877271	107910733	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_107877506_107896442_107896572_107897022_107897071_107910209
ENSMUSG00000031924.5_107877272_107910733_3	chr8	+	946	5	FSM	ENSMUSG00000031924.5	ENSMUST00000034400.5	4316	5	0	3370	0	-1889	multi-exon	FALSE	canonical	3	1441	junction_2	30.906107810593	4149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTTTGTCATTCATCA	NA	False	NA	38	True	AGTAAA	-20	NA	107877271	107910733	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_107877506_107896442_107896572_107897022_107897053_107906045_107906075_107910209
ENSMUSG00000031924.5_107877272_107910733_4	chr8	+	924	4	NNC	ENSMUSG00000031924.5	novel	4316	5	NA	NA	0	-1889	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	681.425140585686	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTTTGTCATTCATCA	NA	False	NA	38	True	AGTAAA	-20	NA	107877271	107910733	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_107877506_107896442_107896572_107897022_107897060_107910209
ENSMUSG00000031924.5_107877272_107910880_1	chr8	+	1093	5	FSM	ENSMUSG00000031924.5	ENSMUST00000034400.5	4316	5	0	3223	0	-1742	multi-exon	FALSE	canonical	3	1441	junction_2	30.906107810593	4220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGATGACCTGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	107877271	107910880	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_107877506_107896442_107896572_107897022_107897053_107906045_107906075_107910209
ENSMUSG00000031928.16_14695972_14745260_1	chr9	+	2582	20	FSM	ENSMUSG00000031928.16	ENSMUST00000034405.11	3286	20	22	682	0	-682	multi-exon	FALSE	canonical	3	154	junction_1	46.9081733954962	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTCCGTTGTTCATTTCT	NA	False	NA	17	True	NA	NA	NA	14695971	14745260	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_14696054_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14714059_14714246_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
ENSMUSG00000031931.5_14691083_14695828_1	chr9	-	2245	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216037.2	1037	3	-6	-1202	-6	0	multi-exon	FALSE	canonical	3	83	junction_2	53	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCAGTGTTTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	14695828	14691082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_14692908_14693910_14694259_14695756
ENSMUSG00000031931.5_14691083_14695828_3	chr9	-	2186	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216372.2	2679	3	324	169	-6	0	multi-exon	FALSE	canonical	3	72	junction_2	58.5	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCAGTGTTTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	14695828	14691082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_14692908_14693910_14694259_14695815
ENSMUSG00000031931.5_14691505_14695828_3	chr9	-	1764	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216372.2	2679	3	324	591	-6	0	multi-exon	FALSE	canonical	3	72	junction_2	58.5	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAATCAAAACAA	NA	False	NA	NA	False	NA	NA	NA	14695828	14691504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_14692908_14693910_14694259_14695815
ENSMUSG00000031931.5_14692285_14695828_1	chr9	-	984	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216372.2	2679	3	324	1371	-6	0	multi-exon	FALSE	canonical	3	72	junction_2	58.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGGTATTTGGGTACATC	NA	False	NA	NA	False	NA	NA	NA	14695828	14692284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_14692908_14693910_14694259_14695815
ENSMUSG00000031931.5_14695998_14745260_1	chr9	-	2606	20	NIC	ENSMUSG00000031931.5	novel	2679	3	NA	NA	-49108	-1836	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTAGGCGCGGGAGAGC	6741	False	NA	NA	False	AAGAAA	-17	NA	14745260	14695997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_14696104_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14714059_14714246_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
ENSMUSG00000031938.16_15216172_15217435_1	chr9	-	229	2	NNC	ENSMUSG00000031938.16	novel	2650	9	NA	NA	0	-2242	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	0	37	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGTAAGAAGTACAATATGT	NA	False	NA	NA	False	NA	NA	NA	15217435	15216171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_15216298_15217332
ENSMUSG00000031938.16_15217556_15220029_1	chr9	-	395	4	NNC	ENSMUSG00000031938.16	novel	2756	9	NA	NA	-2285	-3626	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	123	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCCGGCGCCCAGCAGCC	NA	False	NA	NA	False	NA	NA	NA	15220029	15217555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_15217580_15218218_15218287_15219023_15219118_15219820
ENSMUSG00000031938.16_15217556_15223401_1	chr9	-	1103	7	NIC	ENSMUSG00000031938.16	novel	2756	9	NA	NA	-5657	-3626	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1102	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCCGGCGCCCAGCAGCC	NA	False	NA	NA	False	NA	NA	NA	15223401	15217555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223204
ENSMUSG00000031938.16_15217556_15223401_2	chr9	-	1221	8	NIC	ENSMUSG00000031938.16	novel	2756	9	NA	NA	-5657	-3626	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	911	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCCGGCGCCCAGCAGCC	NA	False	NA	NA	False	NA	NA	NA	15223401	15217555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223204
ENSMUSG00000031939.17_15217556_15220029_1	chr9	+	445	4	FSM	ENSMUSG00000031939.17	ENSMUST00000215124.2	629	4	2	182	0	0	multi-exon	FALSE	canonical	3	69	junction_1	198.269737703183	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAATATGAGCCAAAATTA	9118	False	NA	25	True	TTTAAA	-29	NA	15217555	15220029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820
ENSMUSG00000031939.17_15217556_15220029_2	chr9	+	327	3	ISM	ENSMUSG00000031939.17	ENSMUST00000164079.9	1005	6	-4	3065	0	0	5prime_fragment	FALSE	canonical	3	288	junction_1	109	598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAATATGAGCCAAAATTA	9118	False	NA	25	True	TTTAAA	-29	NA	15217555	15220029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_15217580_15219023_15219118_15219820
ENSMUSG00000031939.17_15217556_15223094_1	chr9	+	1127	7	NIC	ENSMUSG00000031939.17	novel	1005	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	69	junction_1	217.881275010038	997	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGTTGCTTGATTTCAGA	9118	False	NA	NA	False	AATAAA	-17	NA	15217555	15223094	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
ENSMUSG00000031939.17_15217556_15223401_1	chr9	+	1316	6	FSM	ENSMUSG00000031939.17	ENSMUST00000164079.9	1005	6	-4	-307	0	1	multi-exon	FALSE	canonical	3	288	junction_1	106.167791726116	2967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTTAAGTGCTTAGCCC	9118	False	NA	6	True	AATAAA	-17	NA	15217555	15223401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
ENSMUSG00000031939.17_15217556_15223401_2	chr9	+	1434	7	NIC	ENSMUSG00000031939.17	novel	2818	9	NA	NA	0	1	intron_retention	FALSE	canonical	3	69	junction_1	217.881275010038	2442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTTAAGTGCTTAGCCC	9118	False	NA	6	True	AATAAA	-17	NA	15217555	15223401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
ENSMUSG00000031939.17_15217556_15223401_3	chr9	+	1194	7	NIC	ENSMUSG00000031939.17	novel	2818	9	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	29	junction_6	198.555407884046	1335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTTAAGTGCTTAGCCC	9118	False	NA	6	True	AATAAA	-17	NA	15217555	15223401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223113
ENSMUSG00000031939.17_15217556_15228274_1	chr9	+	1342	13	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	69	junction_1	171.959055204042	1855	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTATAGTTTGTATGTA	9118	False	NA	7	True	NA	NA	NA	15217555	15228274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
ENSMUSG00000031950.8_112667335_112679211_1	chr8	+	638	4	NNC	ENSMUSG00000031950.8	novel	1677	4	NA	NA	0	-163	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1333.09697905124	1124	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATTTTCAGTTTTCTT	NA	False	NA	NA	False	AGTAAA	-13	NA	112667334	112679211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_112667485_112667791_112667848_112669133_112669301_112678946
ENSMUSG00000031950.8_112667335_112679211_2	chr8	+	637	4	NNC	ENSMUSG00000031950.8	novel	1677	4	NA	NA	0	-163	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1333.26841508627	1288	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATTTTCAGTTTTCTT	NA	False	NA	NA	False	AGTAAA	-13	NA	112667334	112679211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_112667485_112667798_112667848_112669133_112669307_112678946
ENSMUSG00000031950.8_112667335_112679211_3	chr8	+	638	4	NNC	ENSMUSG00000031950.8	novel	1677	4	NA	NA	0	-163	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1291.41326546626	1210	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATTTTCAGTTTTCTT	NA	False	NA	NA	False	AGTAAA	-13	NA	112667334	112679211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_112667485_112667791_112667842_112669133_112669307_112678946
ENSMUSG00000031950.8_112667335_112679547_1	chr8	+	973	4	NNC	ENSMUSG00000031950.8	novel	1677	4	NA	NA	0	173	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1333.26841508627	16660	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGGTGTGACCATGTCCG	NA	False	NA	NA	False	AATAAA	-18	NA	112667334	112679547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_112667485_112667798_112667848_112669133_112669307_112678946
ENSMUSG00000031950.8_112667335_112679547_2	chr8	+	966	4	NNC	ENSMUSG00000031950.8	novel	1677	4	NA	NA	0	173	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1333.09697905124	9440	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGGTGTGACCATGTCCG	NA	False	NA	NA	False	AATAAA	-18	NA	112667334	112679547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_112667485_112667791_112667848_112669133_112669293_112678946
ENSMUSG00000031950.8_112667335_112679547_3	chr8	+	966	3	NNC	ENSMUSG00000031950.8	novel	1677	4	NA	NA	0	173	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1370.5	6979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGGTGTGACCATGTCCG	NA	False	NA	NA	False	AATAAA	-18	NA	112667334	112679547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_112667494_112669100_112669307_112678946
ENSMUSG00000031950.8_112667335_112679547_6	chr8	+	975	4	NNC	ENSMUSG00000031950.8	novel	1677	4	NA	NA	0	173	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1333.09697905124	20854	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGGTGTGACCATGTCCG	NA	False	NA	NA	False	AATAAA	-18	NA	112667334	112679547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_112667485_112667791_112667848_112669133_112669307_112678951
ENSMUSG00000031950.8_112667335_112679547_7	chr8	+	982	4	NNC	ENSMUSG00000031950.8	novel	1677	4	NA	NA	0	173	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1333.73918823068	19087	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGGTGTGACCATGTCCG	NA	False	NA	NA	False	AATAAA	-18	NA	112667334	112679547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_112667494_112667798_112667848_112669133_112669307_112678946
ENSMUSG00000031950.8_112667335_112679547_8	chr8	+	974	4	NNC	ENSMUSG00000031950.8	novel	1677	4	NA	NA	0	173	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1333.09697905124	14414	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGGTGTGACCATGTCCG	NA	False	NA	NA	False	AATAAA	-18	NA	112667334	112679547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_112667485_112667791_112667848_112669133_112669301_112678946
ENSMUSG00000031950.8_112667335_112679547_9	chr8	+	974	4	NNC	ENSMUSG00000031950.8	novel	1677	4	NA	NA	0	173	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1291.41326546626	14502	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGGTGTGACCATGTCCG	NA	False	NA	NA	False	AATAAA	-18	NA	112667334	112679547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_112667485_112667791_112667842_112669133_112669307_112678946
ENSMUSG00000031951.9_112638643_112660431_1	chr8	-	2904	7	NNC	ENSMUSG00000031951.9	novel	2984	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	98.9258981932099	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCCCTTGGCTTCTGAA	NA	False	NA	-4	True	ATTAAA	-15	NA	112660431	112638642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_112640752_112641128_112641227_112641888_112641971_112644922_112645067_112645459_112645589_112659991_112660162_112660259
ENSMUSG00000031954.7_112495123_112580969_1	chr8	-	1219	7	NNC	ENSMUSG00000031954.7	novel	1178	7	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	735.161206811132	13718	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGGTTGGTGAGAGTAA	NA	False	NA	-23	True	AATAAA	-15	NA	112580969	112495122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_112495420_112505882_112506042_112557501_112557622_112566989_112567118_112568414_112568623_112571725_112571844_112580780
ENSMUSG00000031954.7_112495123_112580969_2	chr8	-	1218	7	NNC	ENSMUSG00000031954.7	novel	1178	7	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	738.776014770377	13739	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGGTTGGTGAGAGTAA	NA	False	NA	-23	True	AATAAA	-15	NA	112580969	112495122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_112495420_112505882_112506042_112557501_112557622_112566989_112567118_112568414_112568617_112571725_112571844_112580775
ENSMUSG00000031960.15_111756432_111760383_1	chr8	+	591	3	NNC	ENSMUSG00000031960.15	novel	709	3	NA	NA	-3344	-3199	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCCAGAAACCGGCTTG	NA	False	NA	NA	False	NA	NA	NA	111756431	111760383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_111756492_111759754_111760174_111760271
ENSMUSG00000031960.15_111760511_111782201_1	chr8	+	3323	21	NIC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	0	-2095	combination_of_known_junctions	FALSE	canonical	2	881	junction_1	574.494062197339	1514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	16	True	AATAAA	-18	NA	111760510	111782201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_111760541_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ENSMUSG00000031960.15_111760548_111766800_1	chr8	+	550	3	ISM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	14	17496	0	-2641	5prime_fragment	FALSE	canonical	3	1913	junction_1	786.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTATGGCGAAGCTGAGC	NA	False	NA	NA	False	NA	NA	NA	111760547	111766800	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_111760896_111763540_111763706_111766763
ENSMUSG00000031960.15_111760548_111782201_1	chr8	+	3641	21	FSM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	14	2095	0	-2095	multi-exon	FALSE	canonical	2	1913	junction_1	386.82599124154	1591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	16	True	AATAAA	-18	NA	111760547	111782201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ENSMUSG00000031960.15_111773637_111782201_1	chr8	+	1706	10	ISM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	13103	2095	-907	-2095	3prime_fragment	FALSE	canonical	2	2613	junction_8	305.658164589541	862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	16	True	AATAAA	-18	NA	111773636	111782201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
ENSMUSG00000031967.16_124204642_124207884_1	chr8	+	308	3	FSM	ENSMUSG00000031967.16	ENSMUST00000133606.2	419	3	-37	148	0	-148	multi-exon	FALSE	canonical	3	684	junction_2	47.5	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAACGTTCCATTTGATA	7495	False	NA	NA	False	AAAAAG	-36	NA	124204641	124207884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_124204787_124207087_124207176_124207809
ENSMUSG00000031967.16_124204642_124217051_1	chr8	+	1296	8	ISM	ENSMUSG00000031967.16	ENSMUST00000001520.13	4227	17	0	13604	0	374	5prime_fragment	FALSE	canonical	3	631	junction_4	49.623891546763	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGTTGTTTGTTTTTCT	7495	False	NA	NA	False	NA	NA	NA	124204641	124217051	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_124204787_124207087_124207176_124207809_124207885_124211341_124211428_124212627_124212778_124214097_124214167_124214939_124215065_124216493
ENSMUSG00000031969.17_26886260_26910815_1	chr9	-	2009	11	FSM	ENSMUSG00000031969.17	ENSMUST00000120367.8	2885	11	47	829	-11	412	multi-exon	FALSE	canonical	0	0	junction_7	75.0053331437172	758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCCTAAGGCAGTTTGT	9278	False	NA	3	True	ATTAAA	-31	NA	26910815	26886259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901489_26901874_26901989_26902535_26902706_26903455_26903557_26910689
ENSMUSG00000031969.17_26886463_26910815_1	chr9	-	1806	11	FSM	ENSMUSG00000031969.17	ENSMUST00000120367.8	2885	11	47	1032	-11	209	multi-exon	FALSE	canonical	0	0	junction_7	75.0053331437172	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTTTTGGAATATTTGG	9278	False	NA	-25	True	AATAAA	-14	NA	26910815	26886462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901489_26901874_26901989_26902535_26902706_26903455_26903557_26910689
ENSMUSG00000031981.8_125340406_125345470_1	chr8	+	728	5	ISM	ENSMUSG00000031981.8	ENSMUST00000093033.6	2330	20	37556	0	227	0	3prime_fragment	FALSE	canonical	1	2	junction_3	0.707106781186548	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTACCATCTGTGTCTGTG	NA	False	NA	NA	False	TATAAA	-23	NA	125340405	125345470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_125340629_125341286_125341366_125342891_125343009_125344171_125344231_125345220
ENSMUSG00000031982.6_125448898_125457738_1	chr8	+	619	4	NIC	ENSMUSG00000031982.6	novel	891	6	NA	NA	0	-1429	combination_of_known_junctions	FALSE	canonical	3	31	junction_3	27.4752413799932	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCAGGCAGTCAGAGGTG	NA	False	NA	NA	False	ATTAAA	-21	NA	125448897	125457738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_125449082_125451994_125452115_125455067_125455222_125457577
ENSMUSG00000031982.6_125448898_125460862_1	chr8	+	1168	6	NNC	ENSMUSG00000031982.6	novel	1165	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	37.0113496106262	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAAGGTTGTCTTTTGAA	NA	False	NA	21	True	AATAAA	-30	NA	125448897	125460862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535_125458681_125460522
ENSMUSG00000031984.9_125566094_125589753_1	chr8	-	1354	7	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	0	-867	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	609.509000936182	860	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGACTGTTAAGTAGCA	NA	False	NA	-8	True	AATACA	-16	NA	125589753	125566093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_125566706_125567186_125567246_125568032_125568120_125568425_125568509_125569101_125569159_125587684_125588011_125589623
ENSMUSG00000031984.9_125566094_125589753_2	chr8	-	1494	8	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	0	-867	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_6	721.36551351006	542	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGACTGTTAAGTAGCA	NA	False	NA	-8	True	AATACA	-16	NA	125589753	125566093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125581640_125581768_125587684_125588011_125589623
ENSMUSG00000031984.9_125566094_125589753_4	chr8	-	1367	7	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	0	-867	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	609.509000936182	2229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGACTGTTAAGTAGCA	NA	False	NA	-8	True	AATACA	-16	NA	125589753	125566093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_125566706_125567186_125567246_125568032_125568120_125568425_125568509_125569088_125569159_125587684_125588011_125589623
ENSMUSG00000031984.9_125566094_125589859_1	chr8	-	1473	7	FSM	ENSMUSG00000031984.9	ENSMUST00000034465.9	2340	7	0	867	0	-867	multi-exon	FALSE	canonical	3	1367	junction_2	144.59416385948	5855	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGACTGTTAAGTAGCA	NA	False	NA	-8	True	AATACA	-16	NA	125589859	125566093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
ENSMUSG00000031984.9_125587722_125589753_1	chr8	-	416	2	NNC	ENSMUSG00000031984.9	novel	2081	3	NA	NA	0	-3293	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	0	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAAACTAAAGTCAGATG	NA	False	NA	-37	True	AGTAAA	-3	NA	125589753	125587721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_125588008_125589623
ENSMUSG00000031984.9_125589811_125616287_1	chr8	-	2436	16	NIC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	-26428	-5382	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCGCGCAGGGACCGTG	NA	False	NA	NA	False	NA	NA	NA	125616287	125589810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_125590052_125597514_125597698_125600071_125600249_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591_125613686_125614496_125614559_125616010
ENSMUSG00000031984.9_125589811_125616654_1	chr8	-	2803	16	NIC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	-26795	-5382	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCGCGCAGGGACCGTG	NA	False	NA	NA	False	NA	NA	NA	125616654	125589810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_125590052_125597514_125597698_125600071_125600249_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591_125613686_125614496_125614559_125616010
ENSMUSG00000031984.9_125589811_125616796_1	chr8	-	2945	16	NIC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	-26937	-5382	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCGCGCAGGGACCGTG	NA	False	NA	NA	False	NA	NA	NA	125616796	125589810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_125590052_125597514_125597698_125600071_125600249_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591_125613686_125614496_125614559_125616010
ENSMUSG00000031987.7_125636950_125675109_1	chr8	-	1016	5	FSM	ENSMUSG00000031987.7	ENSMUST00000034469.7	3594	5	954	1624	954	-1624	multi-exon	FALSE	canonical	3	265	junction_4	22.6605383872493	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATTGTTGCCAGTGAGT	NA	False	NA	-10	True	ATTAAA	-23	NA	125675109	125636949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_125637503_125638479_125638548_125640755_125640893_125642399_125642520_125674971
ENSMUSG00000031990.16_27008680_27032665_1	chr9	-	1925	9	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	5181	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_8	47.0729155141255	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	-1	True	ATTAAA	-14	NA	27032665	27008679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27032579
ENSMUSG00000031990.16_27008680_27033510_1	chr9	-	2001	9	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	4336	0	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_8	53.8573056789884	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	-1	True	ATTAAA	-14	NA	27033510	27008679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27033348
ENSMUSG00000031990.16_27008907_27066689_1	chr9	-	1715	9	FSM	ENSMUSG00000031990.16	ENSMUST00000034472.16	1942	9	0	227	0	-227	multi-exon	FALSE	canonical	3	88	junction_8	42.8396355610082	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGTGTTTCAAAACGTAT	NA	False	NA	NA	False	TATAAA	-18	NA	27066689	27008906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
ENSMUSG00000031995.10_31000698_31001793_1	chr9	-	722	2	ISM	ENSMUSG00000031995.10	ENSMUST00000034478.3	3259	19	41356	0	12423	0	3prime_fragment	FALSE	canonical	3	690	junction_1	0	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTTCTTGCTATACT	2410	False	NA	0	True	AGTAAA	-24	NA	31001793	31000697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_31001324_31001697
ENSMUSG00000031996.18_31060853_31123111_1	chr9	-	1004	5	NNC	ENSMUSG00000031996.18	novel	3504	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	613.489201208954	532	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8715	False	NA	-9	True	AATAAA	-19	NA	31123111	31060852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_31061309_31083285_31083343_31088313_31088438_31089200_31089375_31122918
ENSMUSG00000031996.18_31060853_31123111_2	chr9	-	1008	5	NNC	ENSMUSG00000031996.18	novel	3504	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	613.489201208954	515	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8715	False	NA	-9	True	AATAAA	-19	NA	31123111	31060852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_31061324_31083296_31083343_31088313_31088438_31089200_31089375_31122918
ENSMUSG00000031996.18_31060853_31123111_3	chr9	-	1012	5	NNC	ENSMUSG00000031996.18	novel	3504	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	613.489201208954	535	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8715	False	NA	-9	True	AATAAA	-19	NA	31123111	31060852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_31061323_31083291_31083343_31088313_31088438_31089200_31089375_31122918
ENSMUSG00000031996.18_31060853_31123111_4	chr9	-	1009	5	NNC	ENSMUSG00000031996.18	novel	3504	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	613.489201208954	525	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8715	False	NA	-9	True	AATAAA	-19	NA	31123111	31060852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_31061308_31083279_31083343_31088313_31088438_31089200_31089375_31122918
ENSMUSG00000032002.11_7184699_7207040_1	chr9	+	1077	8	FSM	ENSMUSG00000032002.11	ENSMUST00000215683.2	2421	8	179	1165	148	0	multi-exon	FALSE	canonical	3	895	junction_7	57.310824564343	2954	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTCCGTTGAGTGTCA	158	False	NA	24	True	AATAAA	-32	NA	7184698	7207040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_7184883_7186767_7186860_7188745_7188817_7189161_7189254_7203262_7203372_7203450_7203556_7205297_7205401_7206719
ENSMUSG00000032010.16_43978318_44005290_1	chr9	+	2233	13	FSM	ENSMUSG00000032010.16	ENSMUST00000034508.14	3867	13	0	1634	0	0	multi-exon	FALSE	canonical	3	29	junction_2	11.1654228162962	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCTGACAAGTGAGAGAAAA	NA	False	NA	NA	False	NA	NA	NA	43978317	44005290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_43978518_43986662_43987520_44000428_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
ENSMUSG00000032010.16_43996247_44005290_1	chr9	+	1562	12	FSM	ENSMUSG00000032010.16	ENSMUST00000065461.9	2057	12	11	484	0	0	multi-exon	FALSE	canonical	3	22	junction_1	11.7473401244707	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCTGACAAGTGAGAGAAAA	2259	False	NA	NA	False	NA	NA	NA	43996246	44005290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_43996633_44000428_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
ENSMUSG00000032011.6_43954681_43958095_1	chr9	+	340	3	ISM	ENSMUSG00000032011.6	ENSMUST00000114840.2	1735	4	0	1781	0	-130	5prime_fragment	FALSE	canonical	3	10	junction_1	3	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCGCTCCCGCGTCACCCT	NA	False	NA	NA	False	NA	NA	NA	43954680	43958095	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_43954774_43957253_43957316_43957910
ENSMUSG00000032024.11_40692044_40695477_1	chr9	+	602	3	NIC	ENSMUSG00000032024.11	novel	616	4	NA	NA	6654	-1138	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCGTGGTGGGTGGAGCGG	4196	False	NA	NA	False	NA	NA	NA	40692043	40695477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_40692492_40694218_40694287_40695391
ENSMUSG00000032026.8_48379812_48391879_1	chr9	-	933	6	NIC	ENSMUSG00000032026.8	novel	1077	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_3	458.394328062641	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCGGCACCCTCTGCTC	NA	False	NA	-1	True	AATAAA	-26	NA	48391879	48379811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_48380247_48383119_48383174_48384331_48384441_48386419_48386498_48390609_48390694_48391706
ENSMUSG00000032026.8_48384786_48391893_1	chr9	-	597	5	NIC	ENSMUSG00000032026.8	novel	693	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	484.35388663662	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTCAGTTAAAGTTTTTA	NA	False	NA	-10	True	AATAAA	-15	NA	48391893	48384785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_48384922_48385701_48385814_48386419_48386498_48390609_48390694_48391706
ENSMUSG00000032030.17_53528991_53578379_1	chr9	-	2486	19	FSM	ENSMUSG00000032030.17	ENSMUST00000034529.14	3585	19	432	667	-7	-667	multi-exon	FALSE	canonical	3	311	junction_17	44.7831882587348	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACTCTATTTTGCCAGTCA	NA	False	NA	-4	True	ATTAAA	-21	NA	53578379	53528990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_53529311_53532459_53532584_53533157_53533277_53534081_53534244_53534934_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53578337
ENSMUSG00000032040.16_35035708_35087289_1	chr9	-	1343	7	NNC	ENSMUSG00000032040.16	novel	1445	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	302.376375105963	3328	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACTGATGGTGTAGCCCA	NA	False	NA	-7	True	AATAAA	-18	NA	35087289	35035707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_35036141_35037206_35037348_35037602_35037714_35040756_35040871_35047639_35047786_35082372_35082548_35087066
ENSMUSG00000032042.12_35122451_35124147_1	chr9	+	631	4	ISM	ENSMUSG00000032042.12	ENSMUST00000034541.12	2993	14	0	4163	0	0	5prime_fragment	FALSE	canonical	3	967	junction_3	36.5726066278513	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACAAAAAAAGGGGGGCCA	5512	False	NA	NA	False	AAAAAG	-8	NA	35122450	35124147	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015
ENSMUSG00000032042.12_35122451_35128310_1	chr9	+	2841	15	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_14	273.680396052902	879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAGGTTCATATTATTT	5512	False	NA	3	True	AATAAA	-18	NA	35122450	35128310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233_35127450_35127601
ENSMUSG00000032042.12_35125957_35128310_1	chr9	+	1626	5	ISM	ENSMUSG00000032042.12	ENSMUST00000034541.12	2993	14	3506	0	-238	0	3prime_fragment	FALSE	canonical	3	822	junction_1	93.5227245112117	1034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAGGTTCATATTATTT	9018	False	NA	3	True	AATAAA	-18	NA	35125956	35128310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233
ENSMUSG00000032042.12_35127232_35128310_1	chr9	+	927	2	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	1037	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAGGTTCATATTATTT	NA	False	NA	3	True	AATAAA	-18	NA	35127231	35128310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_35127450_35127601
ENSMUSG00000032044.5_35179161_35180541_1	chr9	+	1058	2	ISM	ENSMUSG00000032044.5	ENSMUST00000034543.5	1821	7	0	6720	0	-4517	5prime_fragment	FALSE	canonical	3	165	junction_1	0	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTTAGTTGGAATAAATC	NA	False	NA	NA	False	AGTAAA	-21	NA	35179160	35180541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_35179375_35179697
ENSMUSG00000032047.6_53493674_53521652_1	chr9	-	1523	12	FSM	ENSMUSG00000032047.6	ENSMUST00000034547.6	3405	12	30	1852	-22	113	multi-exon	FALSE	canonical	3	149	junction_5	11.4912830779187	480	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTTTATTTTTTTGTA	NA	False	NA	-25	True	AATAAA	-14	NA	53521652	53493673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_53493966_53494736_53494895_53496139_53496205_53498752_53498867_53500477_53500574_53502606_53502758_53503267_53503412_53505705_53505807_53505993_53506090_53506582_53506701_53509384_53509433_53521512
ENSMUSG00000032050.19_51978726_51984498_1	chr9	+	472	5	ISM	ENSMUSG00000032050.19	ENSMUST00000061352.11	1502	11	19155	1976	19155	-1976	internal_fragment	FALSE	canonical	3	794	junction_3	85.0687222191564	109	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAGGAAAGAATAGAAC	NA	False	NA	24	True	NA	NA	NA	51978725	51984498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_51978745_51979429_51979577_51980106_51980204_51980914_51981079_51984453
ENSMUSG00000032050.19_51996566_52000029_1	chr9	+	2495	2	ISM	ENSMUSG00000032050.19	ENSMUST00000000590.16	4380	14	37151	0	36995	0	3prime_fragment	FALSE	canonical	3	758	junction_1	0	189	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTTGGAGGTCCGCTGTT	NA	False	NA	15	True	AATAAA	-15	NA	51996565	52000029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_51996646_51997614
ENSMUSG00000032051.10_51854606_51874511_1	chr9	-	781	4	NNC	ENSMUSG00000032051.10	novel	875	4	NA	NA	335	0	at_least_one_novel_splicesite	FALSE	canonical	2	31	junction_3	202.09073869593	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGTGTGTTTGGTGAT	1372	False	NA	-5	True	AATAAA	-17	NA	51874511	51854605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_51854950_51859876_51860007_51868372_51868498_51874329
ENSMUSG00000032051.10_51854606_51874717_1	chr9	-	746	4	FSM	ENSMUSG00000032051.10	ENSMUST00000034552.8	875	4	129	0	129	0	multi-exon	FALSE	canonical	3	440	junction_2	28.5929284186765	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGTGTGTTTGGTGAT	1166	False	NA	-5	True	AATAAA	-17	NA	51874717	51854605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_51854950_51859876_51860007_51868372_51868498_51874570
ENSMUSG00000032051.10_51854805_51874856_1	chr9	-	686	4	FSM	ENSMUSG00000032051.10	ENSMUST00000034552.8	875	4	-10	199	0	-137	multi-exon	FALSE	canonical	3	440	junction_2	28.5929284186765	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTACCTATTTTTATAAT	1027	False	NA	NA	False	AATAAA	-20	NA	51874856	51854804	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_51854950_51859876_51860007_51868372_51868498_51874570
ENSMUSG00000032058.15_50768266_50791707_1	chr9	+	2377	15	FSM	ENSMUSG00000032058.15	ENSMUST00000114437.9	3430	15	29	1024	0	0	multi-exon	FALSE	canonical	3	496	junction_13	51.8120622627431	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGATGTGGAAGGCTAACG	16	True	NA	NA	False	NA	NA	NA	50768265	50791707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
ENSMUSG00000032058.15_50768266_50792542_1	chr9	+	3212	15	FSM	ENSMUSG00000032058.15	ENSMUST00000114437.9	3430	15	29	189	0	-189	multi-exon	FALSE	canonical	3	496	junction_13	51.8120622627431	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAATTGTGTAAATGCTTT	16	True	NA	9	True	ATTAAA	-15	NA	50768265	50792542	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
ENSMUSG00000032060.11_50664320_50667936_1	chr9	+	926	3	FSM	ENSMUSG00000032060.11	ENSMUST00000034562.9	946	3	113	-93	0	0	multi-exon	FALSE	canonical	3	16	junction_1	1.5	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTCGTGTTTGCAAAC	NA	False	NA	NA	False	AATAAA	-20	NA	50664319	50667936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_50664778_50665811_50665935_50667591
ENSMUSG00000032062.4_50651463_50657827_1	chr9	-	776	4	FSM	ENSMUSG00000032062.4	ENSMUST00000239417.2	1242	4	-6	472	-6	-472	multi-exon	FALSE	canonical	3	23	junction_3	2.16024689946929	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTTTTGTCGTTATTTG	2125	False	NA	NA	False	NA	NA	NA	50657827	50651462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_50652050_50652595_50652661_50653560_50653599_50657741
ENSMUSG00000032064.18_50621963_50639284_1	chr9	-	509	2	FSM	ENSMUSG00000032064.18	ENSMUST00000118707.2	989	2	-46	526	-9	-526	multi-exon	FALSE	canonical	3	51	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTATTGTATGGGAAGAT	NA	False	NA	NA	False	AATAAA	-16	NA	50639284	50621962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_50622273_50639085
ENSMUSG00000032065.7_50468119_50472613_1	chr9	-	1004	5	FSM	ENSMUSG00000032065.7	ENSMUST00000034568.7	895	5	-3	-106	-3	0	multi-exon	FALSE	canonical	3	20	junction_4	2.27760839478607	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACCTGGCTATTTTTTTA	6974	False	NA	NA	False	AATAAA	-15	NA	50472613	50468118	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_50468792_50469548_50469601_50469686_50469799_50470519_50470599_50472525
ENSMUSG00000032068.15_50405825_50416438_1	chr9	+	1345	4	FSM	ENSMUSG00000032068.15	ENSMUST00000114474.8	1689	4	0	344	0	-344	multi-exon	FALSE	canonical	3	38	junction_1	3.39934634239519	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCGAAATGTGCTAAATTG	NA	False	NA	NA	False	AATAAA	-19	NA	50405824	50416438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_50406047_50410394_50410600_50412372_50412429_50415576
ENSMUSG00000032076.21_47699267_47741029_1	chr9	+	1311	8	ISM	ENSMUSG00000032076.21	ENSMUST00000152459.8	1784	12	257758	20856	257596	-4717	internal_fragment	FALSE	canonical	3	173	junction_7	55.5356109323797	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAAGTGTATTTGTCTAC	1846	False	NA	NA	False	AATAAA	-30	NA	47699266	47741029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47740674
ENSMUSG00000032076.21_47699267_47762327_1	chr9	+	1879	10	ISM	ENSMUSG00000032076.21	ENSMUST00000085909.9	2126	11	257712	0	257596	0	3prime_fragment	FALSE	canonical	3	105	junction_8	78.429019572548	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAAAGA	1846	False	NA	NA	False	NA	NA	NA	47699266	47762327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47740674_47740708_47759464_47759597_47761569
ENSMUSG00000032076.21_47699267_47762327_2	chr9	+	1846	9	ISM	ENSMUSG00000032076.21	ENSMUST00000114547.8	4444	10	257712	2351	257596	0	3prime_fragment	FALSE	canonical	3	143	junction_7	61.313614923604	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAAAGA	1846	False	NA	NA	False	NA	NA	NA	47699266	47762327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47759464_47759597_47761569
ENSMUSG00000032077.6_46194306_46210081_1	chr9	+	2212	10	FSM	ENSMUSG00000032077.6	ENSMUST00000074957.5	2539	10	0	327	0	0	multi-exon	FALSE	canonical	3	99	junction_1	15.5737988261228	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTCCTAACTGGGTATT	NA	False	NA	45	True	AATAAA	-22	NA	46194305	46210081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_46194472_46197640_46197732_46198314_46198400_46198959_46199734_46201423_46201642_46202605_46202709_46202992_46203132_46203363_46203549_46203745_46203828_46209712
ENSMUSG00000032077.6_46203386_46210081_1	chr9	+	614	3	ISM	ENSMUSG00000032077.6	ENSMUST00000213932.2	978	5	740	145	740	0	3prime_fragment	FALSE	canonical	3	138	junction_1	0.5	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTCCTAACTGGGTATT	6297	False	NA	45	True	AATAAA	-22	NA	46203385	46210081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_46203549_46203745_46203828_46209712
ENSMUSG00000032078.18_46184491_46192902_1	chr9	+	1816	14	FSM	ENSMUSG00000032078.18	ENSMUST00000156440.8	2984	14	129	1039	0	120	multi-exon	FALSE	canonical	3	619	junction_8	51.2505159448701	1033	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGCCTCTGCGTTCATGTC	NA	False	NA	14	True	ATTAAA	-21	NA	46184490	46192902	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_46184666_46184775_46184938_46185353_46185445_46185954_46186026_46186661_46186749_46187028_46187152_46187497_46187546_46187709_46187777_46188089_46188161_46188943_46189034_46189601_46189713_46190966_46191054_46191213_46191280_46192335
ENSMUSG00000032092.6_44953844_44965313_1	chr9	+	2986	6	FSM	ENSMUSG00000032092.6	ENSMUST00000034600.5	3107	6	121	0	121	0	multi-exon	FALSE	canonical	3	426	junction_5	54.042205728486	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGATTTTTATTATTTGC	NA	False	NA	15	True	AATAAA	-18	NA	44953843	44965313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44954093_44954997_44955165_44955450_44955662_44958461_44958610_44960949_44961023_44963175
ENSMUSG00000032092.6_44953994_44965313_1	chr9	+	2836	6	FSM	ENSMUSG00000032092.6	ENSMUST00000034600.5	3107	6	271	0	0	0	multi-exon	FALSE	canonical	3	426	junction_5	54.042205728486	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGATTTTTATTATTTGC	NA	False	NA	15	True	AATAAA	-18	NA	44953993	44965313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44954093_44954997_44955165_44955450_44955662_44958461_44958610_44960949_44961023_44963175
ENSMUSG00000032094.9_44893084_44897720_1	chr9	+	700	5	FSM	ENSMUSG00000032094.9	ENSMUST00000034602.9	1617	5	0	917	0	0	multi-exon	FALSE	canonical	1	3	junction_2	2.48746859276655	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCGCCTGTGTTTTCCAAA	NA	False	NA	NA	False	AATAAA	-20	NA	44893083	44897720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44893239_44896267_44896487_44896901_44897034_44897354_44897399_44897570
ENSMUSG00000032096.17_44653336_44679110_1	chr9	-	3565	10	FSM	ENSMUSG00000032096.17	ENSMUST00000034607.10	4072	10	32	475	-15	-475	multi-exon	FALSE	canonical	3	910	junction_6	81.8426674920987	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCTATCCAAGTGTATTC	NA	False	NA	-16	True	ATTAAA	-32	NA	44679110	44653335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_44655314_44656714_44656920_44661621_44661731_44662512_44662661_44663406_44663573_44668416_44668582_44669857_44670064_44670177_44670358_44671258_44671523_44678966
ENSMUSG00000032096.17_44653437_44679110_1	chr9	-	3464	10	FSM	ENSMUSG00000032096.17	ENSMUST00000034607.10	4072	10	32	576	-15	-576	multi-exon	FALSE	canonical	3	910	junction_6	81.8426674920987	752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTACTGGACTCTAAC	NA	False	NA	-17	True	AATAAA	-18	NA	44679110	44653436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_44655314_44656714_44656920_44661621_44661731_44662512_44662661_44663406_44663573_44668416_44668582_44669857_44670064_44670177_44670358_44671258_44671523_44678966
ENSMUSG00000032096.17_44654867_44679110_1	chr9	-	2034	10	FSM	ENSMUSG00000032096.17	ENSMUST00000034607.10	4072	10	32	2006	-15	-2006	multi-exon	FALSE	canonical	3	910	junction_6	81.8426674920987	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCTATGGATTTGAG	NA	False	NA	62	True	AATATA	-28	NA	44679110	44654866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_44655314_44656714_44656920_44661621_44661731_44662512_44662661_44663406_44663573_44668416_44668582_44669857_44670064_44670177_44670358_44671258_44671523_44678966
ENSMUSG00000032099.4_35481580_35557756_1	chr9	-	944	5	Fusion	ENSMUSG00000032099.4_ENSMUSG00000050555.10_ENSMUSG00000094995.3	novel	1072	3	NA	NA	1742	-5826	multi-exon	FALSE	non_canonical	0	0	junction_1	0	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCCACGCCCCAAACCCC	779	False	NA	NA	False	AAGAAA	-37	NA	35557756	35481579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr9_-_35481827_35485525_35485684_35518890_35519016_35523067_35523168_35557442
ENSMUSG00000032101.7_35453143_35469824_1	chr9	-	1734	12	FSM	ENSMUSG00000032101.7	ENSMUST00000034612.7	6934	12	0	5200	0	-5200	multi-exon	FALSE	canonical	3	22	junction_11	3.32533475603125	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTGAGGGCTCTTTGAAA	NA	False	NA	NA	False	AATAAA	-23	NA	35469824	35453142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_35453356_35454893_35455083_35457109_35457273_35458076_35458315_35462580_35462759_35464132_35464248_35465602_35465706_35465812_35465906_35468061_35468198_35468677_35468726_35468980_35469048_35469633
ENSMUSG00000032103.11_35470762_35478439_1	chr9	+	1847	3	ISM	ENSMUSG00000032103.11	ENSMUST00000135768.2	2144	4	871	-5	0	5	3prime_fragment	FALSE	canonical	3	88	junction_2	8	371	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTCTTTTTCAAGGC	NA	False	NA	17	True	ATTAAA	-17	NA	35470761	35478439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_35470814_35476079_35477152_35477716
ENSMUSG00000032112.11_44315056_44318651_1	chr9	-	974	5	FSM	ENSMUSG00000032112.11	ENSMUST00000034623.8	1220	5	246	0	-3	0	multi-exon	FALSE	canonical	3	556	junction_4	135.857462069626	6796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTCTCTCCTAACTGAT	1719	False	NA	-8	True	AATAAA	-17	NA	44318651	44315055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_44315396_44315630_44315758_44316539_44316644_44318100_44318276_44318423
ENSMUSG00000032113.17_36619935_36637897_1	chr9	-	3183	13	FSM	ENSMUSG00000032113.17	ENSMUST00000034625.12	3397	13	57	157	-16	-157	multi-exon	FALSE	canonical	3	297	junction_12	54.0685650098301	1340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAACAACTGTTTTTTG	705	False	NA	-5	True	TATAAA	-21	NA	36637897	36619934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092_36637175_36637858
ENSMUSG00000032113.17_36620736_36637897_1	chr9	-	2382	13	FSM	ENSMUSG00000032113.17	ENSMUST00000034625.12	3397	13	57	958	-16	0	multi-exon	FALSE	canonical	3	297	junction_12	54.0685650098301	1152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGGGGTCCTGTATTCC	705	False	NA	NA	False	ATTAAA	-12	NA	36637897	36620735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092_36637175_36637858
ENSMUSG00000032113.17_36620902_36637897_1	chr9	-	2216	13	FSM	ENSMUSG00000032113.17	ENSMUST00000034625.12	3397	13	57	1124	-16	-166	multi-exon	FALSE	canonical	3	297	junction_12	54.0685650098301	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTAACTCTGAACTTATT	705	False	NA	0	True	AATAAA	-17	NA	36637897	36620901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092_36637175_36637858
ENSMUSG00000032113.17_36635050_36637897_1	chr9	-	388	3	FSM	ENSMUSG00000032113.17	ENSMUST00000173977.2	508	3	-31	151	-16	108	multi-exon	FALSE	canonical	3	297	junction_2	57	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGTTGTGTGTGCTGCTGG	705	False	NA	NA	False	GATAAA	-21	NA	36637897	36635049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_36635317_36637092_36637175_36637858
ENSMUSG00000032114.10_44308267_44314263_1	chr9	+	2016	9	FSM	ENSMUSG00000032114.10	ENSMUST00000215420.2	2128	9	118	-6	118	0	multi-exon	FALSE	canonical	1	5	junction_1	8.7740740252177	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCAGTGGCTCATCCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	44308266	44314263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44308289_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
ENSMUSG00000032116.19_36643722_36678915_1	chr9	-	2725	18	FSM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	60	3082	0	0	multi-exon	FALSE	canonical	3	1637	junction_6	106.765013773661	2180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGGACCAGAGGAG	NA	False	NA	-19	True	NA	NA	NA	36678915	36643721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
ENSMUSG00000032116.19_36643977_36678915_1	chr9	-	2470	18	FSM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	60	3337	0	-255	multi-exon	FALSE	canonical	3	1637	junction_6	106.765013773661	799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCTTATTTGTTTTGAC	NA	False	NA	-4	True	ATTAAA	-24	NA	36678915	36643976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
ENSMUSG00000032119.6_44206970_44216943_1	chr9	-	2075	10	FSM	ENSMUSG00000032119.6	ENSMUST00000216508.2	5333	10	25	3233	0	434	multi-exon	FALSE	canonical	3	40	junction_7	6.83852557930183	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTTCTTAAGTTTGATG	NA	False	NA	-3	True	AATAAA	-20	NA	44216943	44206969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859_44211090_44213706_44213885_44216912
ENSMUSG00000032121.10_37119519_37134474_1	chr9	+	1062	4	NNC	ENSMUSG00000032121.10	novel	2619	4	NA	NA	0	-1522	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	27.0102861065105	606	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAGGGCTTGCTCTTCAA	NA	False	NA	9	True	AATAAA	-15	NA	37119518	37134474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_37119667_37129561_37129673_37130497_37130601_37133774
ENSMUSG00000032121.10_37119519_37134474_2	chr9	+	1032	4	NNC	ENSMUSG00000032121.10	novel	2619	4	NA	NA	0	-1522	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	19.2527054375915	555	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAGGGCTTGCTCTTCAA	NA	False	NA	9	True	AATAAA	-15	NA	37119518	37134474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_37119637_37129561_37129673_37130497_37130601_37133774
ENSMUSG00000032123.6_44238142_44244896_1	chr9	+	1783	8	FSM	ENSMUSG00000032123.6	ENSMUST00000215050.2	2050	8	-28	295	0	-295	multi-exon	FALSE	canonical	3	5	junction_1	96.7247303919104	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTAGTGTAGCATCCCC	3774	False	NA	16	True	AATAAA	-19	NA	44238141	44244896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44238503_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
ENSMUSG00000032123.6_44238170_44244896_2	chr9	+	1876	9	FSM	ENSMUSG00000032123.6	ENSMUST00000054708.5	2205	9	28	301	0	-295	multi-exon	FALSE	canonical	3	223	junction_1	28.7920887571569	858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTAGTGTAGCATCCCC	3802	False	NA	16	True	AATAAA	-19	NA	44238169	44244896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44238503_44238848_44238970_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
ENSMUSG00000032123.6_44238847_44244896_1	chr9	+	1460	7	NIC	ENSMUSG00000032123.6	novel	2205	9	NA	NA	-433	-295	combination_of_known_splicesites	FALSE	canonical	2	12	junction_3	96.646693338848	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTAGTGTAGCATCCCC	4479	False	NA	16	True	AATAAA	-19	NA	44238846	44244896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_44238970_44239249_44239464_44240287_44240435_44243200_44243390_44243859_44243948_44244112_44244269_44244353
ENSMUSG00000032126.17_44247649_44255525_1	chr9	-	1587	14	NNC	ENSMUSG00000032126.17	novel	1605	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	248.625761398068	3411	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTGAGTCTGAGACCTT	1408	False	NA	-4	True	AATAAA	-20	NA	44255525	44247648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250779_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44255306
ENSMUSG00000032126.17_44247649_44255525_3	chr9	-	1519	13	NIC	ENSMUSG00000032126.17	novel	1605	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_11	249.077004491917	2074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTGAGTCTGAGACCTT	1408	False	NA	-4	True	AATAAA	-20	NA	44255525	44247648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44253314_44253369_44255306
ENSMUSG00000032127.10_44259391_44272934_1	chr9	-	3166	16	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	0	-166	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	77.9168787875901	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTTATGGAGACTTTCCA	6411	False	NA	-27	True	AATAAA	-27	NA	44272934	44259390	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267524_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271276_44272724
ENSMUSG00000032171.8_20563391_20574986_1	chr9	+	934	4	NNC	ENSMUSG00000032171.8	novel	3843	4	NA	NA	0	-2894	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1255.46830571969	10165	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGTGGTCCTGTATCAT	NA	False	NA	23	True	ATTAAA	-13	NA	20563390	20574986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_20563494_20566657_20566877_20573593_20573690_20574470
ENSMUSG00000032171.8_20563391_20574986_2	chr9	+	948	4	NNC	ENSMUSG00000032171.8	novel	3843	4	NA	NA	0	-2894	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1255.46830571969	13659	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGTGGTCCTGTATCAT	NA	False	NA	23	True	ATTAAA	-13	NA	20563390	20574986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_20563494_20566657_20566877_20573593_20573715_20574481
ENSMUSG00000032171.8_20563391_20574986_3	chr9	+	929	4	NNC	ENSMUSG00000032171.8	novel	3843	4	NA	NA	0	-2894	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1298.02679308077	5558	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGTGGTCCTGTATCAT	NA	False	NA	23	True	ATTAAA	-13	NA	20563390	20574986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_20563494_20566657_20566877_20573613_20573705_20574470
ENSMUSG00000032171.8_20563391_20574986_4	chr9	+	938	4	NNC	ENSMUSG00000032171.8	novel	3843	4	NA	NA	0	-2894	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1298.02679308077	17530	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGTGGTCCTGTATCAT	NA	False	NA	23	True	ATTAAA	-13	NA	20563390	20574986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_20563494_20566657_20566877_20573604_20573705_20574470
ENSMUSG00000032171.8_20563391_20574986_5	chr9	+	1199	5	NNC	ENSMUSG00000032171.8	novel	3843	4	NA	NA	0	-2894	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1356.08561215729	903	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGTGGTCCTGTATCAT	NA	False	NA	23	True	ATTAAA	-13	NA	20563390	20574986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_20563494_20566657_20566877_20573073_20573324_20573593_20573705_20574470
ENSMUSG00000032171.8_20563391_20574986_6	chr9	+	730	3	NIC	ENSMUSG00000032171.8	novel	3843	4	NA	NA	0	-2894	combination_of_known_splicesites	FALSE	canonical	2	28	junction_1	1388.5	786	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGTGGTCCTGTATCAT	NA	False	NA	23	True	ATTAAA	-13	NA	20563390	20574986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_20563494_20573593_20573705_20574470
ENSMUSG00000032171.8_20563391_20574986_7	chr9	+	948	4	NNC	ENSMUSG00000032171.8	novel	3843	4	NA	NA	0	-2894	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1282.18312091353	12801	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGTGGTCCTGTATCAT	NA	False	NA	23	True	ATTAAA	-13	NA	20563390	20574986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_20563476_20566640_20566877_20573593_20573705_20574470
ENSMUSG00000032171.8_20563391_20574986_8	chr9	+	931	4	NNC	ENSMUSG00000032171.8	novel	3843	4	NA	NA	0	-2894	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1282.18312091353	7281	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGTGGTCCTGTATCAT	NA	False	NA	23	True	ATTAAA	-13	NA	20563390	20574986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_20563476_20566657_20566877_20573593_20573705_20574470
ENSMUSG00000032178.15_21314477_21316659_1	chr9	+	1121	3	ISM	ENSMUSG00000032178.15	ENSMUST00000215169.2	2118	10	5712	-3	-452	2	3prime_fragment	FALSE	canonical	3	965	junction_1	190.5	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTCTCAGGCCTGGGT	NA	False	NA	118	True	AATAAA	-16	NA	21314476	21316659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_21314798_21315355_21315488_21315991
ENSMUSG00000032178.15_21314477_21316659_2	chr9	+	1010	3	NNC	ENSMUSG00000032178.15	novel	2118	10	NA	NA	-452	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	673	136	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTCTCAGGCCTGGGT	NA	False	NA	118	True	AATAAA	-16	NA	21314476	21316659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_21314687_21315355_21315488_21315991
ENSMUSG00000032180.12_21418851_21421490_1	chr9	-	1285	4	FSM	ENSMUSG00000032180.12	ENSMUST00000214576.2	1013	4	40	-312	-7	0	multi-exon	FALSE	canonical	3	33	junction_2	250.551835399827	3543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGCCTGGTGACTGGGCT	NA	False	NA	-5	True	AATAAA	-19	NA	21421490	21418850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21419688_21420226_21420411_21420584_21420648_21421289
ENSMUSG00000032182.16_21500726_21504068_3	chr9	-	1222	9	NIC	ENSMUSG00000032182.16	novel	1894	10	NA	NA	0	-744	intron_retention	FALSE	canonical	3	27	junction_8	22.544400635191	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGATCCAGAGAATTTATA	6124	False	NA	NA	False	NA	NA	NA	21504068	21500725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504032
ENSMUSG00000032182.16_21500726_21504068_4	chr9	-	1294	9	ISM	ENSMUSG00000032182.16	ENSMUST00000078572.9	1894	10	0	748	0	-744	intron_retention	FALSE	canonical	3	66	junction_4	11.9032558571174	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGATCCAGAGAATTTATA	6124	False	NA	NA	False	NA	NA	NA	21504068	21500725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823
ENSMUSG00000032182.16_21500726_21504068_5	chr9	-	1146	10	FSM	ENSMUSG00000032182.16	ENSMUST00000078572.9	1894	10	0	748	0	-744	multi-exon	FALSE	canonical	3	27	junction_9	21.338541031039	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGATCCAGAGAATTTATA	6124	False	NA	NA	False	NA	NA	NA	21504068	21500725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504032
ENSMUSG00000032185.16_21499982_21504068_1	chr9	+	1900	10	Fusion	ENSMUSG00000048429.11_ENSMUSG00000032185.16	novel	3585	14	NA	NA	1283	149	multi-exon	FALSE	non_canonical	0	0	junction_1	0	235	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCTCGACTTCCCTTCAG	475	False	NA	NA	False	NA	NA	NA	21499981	21504068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr9_+_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504022
ENSMUSG00000032185.16_21500726_21504068_1	chr9	+	1156	10	Fusion	ENSMUSG00000048429.11_ENSMUSG00000032185.16	novel	3585	14	NA	NA	2027	149	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCTCGACTTCCCTTCAG	1219	False	NA	NA	False	NA	NA	NA	21500725	21504068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr9_+_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504022
ENSMUSG00000032186.16_75481098_75518422_1	chr9	-	1513	10	FSM	ENSMUSG00000032186.16	ENSMUST00000098552.10	9871	10	163	8195	0	0	multi-exon	TRUE	canonical	3	14	junction_9	3.42467444609388	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTGTAGTTTGTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	75518422	75481097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_75481406_75483927_75484073_75484390_75484535_75489111_75489220_75493329_75493461_75495171_75495259_75499844_75499968_75502202_75502360_75504491_75504685_75518305
ENSMUSG00000032187.17_21527560_21553888_1	chr9	+	1926	10	ISM	ENSMUSG00000032187.17	ENSMUST00000174008.8	5405	34	0	60774	0	-43636	5prime_fragment	FALSE	canonical	3	544	junction_6	59.085625249388	135	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGCTGGGCCTGACTAAG	1332	False	NA	55	True	NA	NA	NA	21527559	21553888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720
ENSMUSG00000032187.17_21550520_21553888_1	chr9	+	510	3	ISM	ENSMUSG00000032187.17	ENSMUST00000172996.2	3800	27	3457	43636	3457	-43636	internal_fragment	FALSE	canonical	3	614	junction_1	9	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGCTGGGCCTGACTAAG	3630	False	NA	55	True	NA	NA	NA	21550519	21553888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_21550688_21552207_21552382_21553720
ENSMUSG00000032193.10_21634937_21650844_1	chr9	+	1489	9	ISM	ENSMUSG00000032193.10	ENSMUST00000217111.2	2854	10	2	1454	0	-538	5prime_fragment	FALSE	canonical	3	262	junction_7	21.775846711437	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTACAGGTGAGCTGCAG	1931	False	NA	NA	False	AATAGA	-30	NA	21634936	21650844	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650277_21650681
ENSMUSG00000032207.11_70705454_70724025_1	chr9	-	1031	5	ISM	ENSMUSG00000032207.11	ENSMUST00000034731.10	1920	9	118065	44	117870	0	3prime_fragment	FALSE	canonical	3	43	junction_2	8.95823643358446	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGAGGGTGTGCTTTGCT	NA	False	NA	NA	False	AATAAA	-11	NA	70724025	70705453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_70705691_70709354_70709574_70710978_70711097_70719951_70720195_70723811
ENSMUSG00000032215.16_73020730_73029887_1	chr9	+	809	6	NNC	ENSMUSG00000032215.16	novel	1543	6	NA	NA	0	36	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	377.547136130047	467	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTGTGTGAAATCCGAAT	8580	False	NA	26	True	CATAAA	-19	NA	73020729	73029887	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_73020866_73022169_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029551
ENSMUSG00000032215.16_73020730_73029887_2	chr9	+	815	6	FSM	ENSMUSG00000032215.16	ENSMUST00000034738.14	1543	6	0	728	0	36	multi-exon	FALSE	canonical	3	633	junction_5	127.855230632149	849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTGTGTGAAATCCGAAT	8580	False	NA	26	True	CATAAA	-19	NA	73020729	73029887	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_73020866_73022169_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545
ENSMUSG00000032215.16_73020730_73029994_1	chr9	+	922	6	FSM	ENSMUSG00000032215.16	ENSMUST00000034738.14	1543	6	0	621	0	0	multi-exon	FALSE	canonical	3	633	junction_5	127.855230632149	922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGACTTTTTTTTTGTT	8580	False	NA	133	True	NA	NA	NA	73020729	73029994	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_73020866_73022169_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545
ENSMUSG00000032215.16_73020730_73030615_1	chr9	+	1537	6	NNC	ENSMUSG00000032215.16	novel	1543	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	377.547136130047	1689	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTACATATCTCTTATTT	8580	False	NA	13	True	AATAAA	-18	NA	73020729	73030615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_73020866_73022169_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029551
ENSMUSG00000032216.16_72569720_72580026_1	chr9	+	633	4	NNC	ENSMUSG00000032216.16	novel	1260	3	NA	NA	0	596	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1391.82190750908	39	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTGTGTGGGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	72569719	72580026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72579808
ENSMUSG00000032216.16_72569720_72595031_1	chr9	+	839	7	NNC	ENSMUSG00000032216.16	novel	3329	10	NA	NA	0	15601	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1369.92620441962	174	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTTACATTGTATAACT	NA	False	NA	NA	False	AAAAAG	-3	NA	72569719	72595031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72594779
ENSMUSG00000032216.16_72569720_72619511_1	chr9	+	763	9	ISM	ENSMUSG00000032216.16	ENSMUST00000184450.8	3329	10	-44	8561	0	0	5prime_fragment	FALSE	non_canonical	0	0	junction_1	940.972958896801	198	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAGATGAAAATGCAGACC	NA	False	NA	NA	False	ATTAAA	-28	NA	72569719	72619511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448
ENSMUSG00000032218.8_70314974_70328829_1	chr9	-	1526	9	NNC	ENSMUSG00000032218.8	novel	1531	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	472.383517388149	1639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGTATCCTGTGTATAT	NA	False	NA	-8	True	AATAAA	-14	NA	70328829	70314973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_70315312_70316561_70316664_70317398_70317544_70317936_70318174_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
ENSMUSG00000032218.8_70314974_70328829_2	chr9	-	1523	9	NNC	ENSMUSG00000032218.8	novel	1531	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_8	448.011840663838	901	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGTATCCTGTGTATAT	NA	False	NA	-8	True	AATAAA	-14	NA	70328829	70314973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_70315312_70316561_70316673_70317402_70317544_70317936_70318174_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326404_70328698
ENSMUSG00000032218.8_70314974_70328829_3	chr9	-	1525	9	NNC	ENSMUSG00000032218.8	novel	1531	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	470.774079973611	2205	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGTATCCTGTGTATAT	NA	False	NA	-8	True	AATAAA	-14	NA	70328829	70314973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_70315312_70316561_70316673_70317402_70317544_70317936_70318168_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
ENSMUSG00000032218.8_70314974_70328859_1	chr9	-	1553	9	NNC	ENSMUSG00000032218.8	novel	1531	9	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_8	448.011840663838	1590	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGTATCCTGTGTATAT	NA	False	NA	-8	True	AATAAA	-14	NA	70328859	70314973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_70315312_70316561_70316673_70317402_70317544_70317936_70318174_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326404_70328698
ENSMUSG00000032218.8_70314974_70328859_2	chr9	-	1555	9	NNC	ENSMUSG00000032218.8	novel	1531	9	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	470.774079973611	2577	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGTATCCTGTGTATAT	NA	False	NA	-8	True	AATAAA	-14	NA	70328859	70314973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_70315312_70316561_70316673_70317402_70317544_70317936_70318168_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
ENSMUSG00000032221.15_72345817_72365858_1	chr9	+	1801	10	FSM	ENSMUSG00000032221.15	ENSMUST00000034746.10	5250	10	0	3449	0	-3449	multi-exon	FALSE	canonical	3	40	junction_2	21.6834692682276	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGAATTAGTCATTTTT	NA	False	NA	5	True	ATTAAA	-17	NA	72345816	72365858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_72345962_72346521_72346744_72352124_72352253_72353488_72353592_72355810_72356041_72356432_72356650_72356733_72356842_72359862_72360121_72364059_72364186_72365594
ENSMUSG00000032221.15_72345817_72365858_2	chr9	+	1246	7	NIC	ENSMUSG00000032221.15	novel	5250	10	NA	NA	0	-3449	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	33.4535332795938	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGAATTAGTCATTTTT	NA	False	NA	5	True	ATTAAA	-17	NA	72345816	72365858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_72345962_72346521_72346744_72352124_72352253_72353488_72353592_72359862_72360121_72364059_72364186_72365594
ENSMUSG00000032221.15_72368385_72399243_1	chr9	+	1265	12	NNC	ENSMUSG00000032221.15	novel	5250	10	NA	NA	22568	29936	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	730	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGGGCGATGCGGTTGC	NA	False	NA	NA	False	NA	NA	NA	72368384	72399243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_72368561_72369137_72369273_72380939_72381075_72385018_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395299_72395358_72399020_72399101_72399207
ENSMUSG00000032221.15_72368385_72399243_2	chr9	+	1136	11	NIC	ENSMUSG00000032221.15	novel	5250	10	NA	NA	22568	29936	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGGGCGATGCGGTTGC	NA	False	NA	NA	False	NA	NA	NA	72368384	72399243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_72368561_72369137_72369273_72385018_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
ENSMUSG00000032221.15_72368385_72399243_3	chr9	+	1271	12	NIC	ENSMUSG00000032221.15	novel	5250	10	NA	NA	22568	29936	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGGGCGATGCGGTTGC	NA	False	NA	NA	False	NA	NA	NA	72368384	72399243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_72368561_72369137_72369273_72380939_72381075_72385018_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
ENSMUSG00000032224.16_69997729_70048645_1	chr9	-	1552	9	FSM	ENSMUSG00000032224.16	ENSMUST00000034749.16	3703	9	215	1936	215	-1936	multi-exon	FALSE	canonical	3	198	junction_1	14.7118149798045	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCCACCATGGTGATTT	NA	False	NA	NA	False	NA	NA	NA	70048645	69997728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_69998174_70000772_70000966_70003332_70003469_70006369_70006477_70010101_70010232_70017539_70017659_70032205_70032480_70033468_70033566_70048594
ENSMUSG00000032224.16_69997847_70048645_1	chr9	-	1434	9	FSM	ENSMUSG00000032224.16	ENSMUST00000034749.16	3703	9	215	2054	215	-2054	multi-exon	FALSE	canonical	3	198	junction_1	14.7118149798045	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCCTAAGTGCAGTTGAG	NA	False	NA	-9	True	AATACA	-16	NA	70048645	69997846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_69998174_70000772_70000966_70003332_70003469_70006369_70006477_70010101_70010232_70017539_70017659_70032205_70032480_70033468_70033566_70048594
ENSMUSG00000032246.15_62775954_62782996_1	chr9	+	573	3	ISM	ENSMUSG00000032246.15	ENSMUST00000215968.2	526	4	10538	-70	10538	70	3prime_fragment	FALSE	canonical	3	41	junction_1	28	240	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTAATAAGGTCTGTC	3019	False	NA	NA	False	AATAAA	-22	NA	62775953	62782996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_62776100_62778547_62778737_62782758
ENSMUSG00000032246.15_62775954_62783203_2	chr9	+	780	3	ISM	ENSMUSG00000032246.15	ENSMUST00000034777.14	864	5	10568	0	10538	0	3prime_fragment	FALSE	canonical	3	41	junction_1	28	648	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGAATTGGTGTTTCCCT	3019	False	NA	9	True	AATAAA	-21	NA	62775953	62783203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_62776100_62778547_62778737_62782758
ENSMUSG00000032246.15_62778241_62783203_1	chr9	+	941	2	ISM	ENSMUSG00000032246.15	ENSMUST00000163820.3	699	4	12838	-7	12825	0	3prime_fragment	FALSE	canonical	3	97	junction_1	0	410	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGAATTGGTGTTTCCCT	5306	False	NA	9	True	AATAAA	-21	NA	62778240	62783203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_62778737_62782758
ENSMUSG00000032249.15_62248611_62285100_1	chr9	+	1113	7	NNC	ENSMUSG00000032249.15	novel	2113	7	NA	NA	0	37	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	202.512551051369	6794	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTATTTCCCCCCCTCC	NA	False	NA	8	True	AATAAA	-19	NA	62248610	62285100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284841
ENSMUSG00000032249.15_62248611_62285100_2	chr9	+	1119	7	FSM	ENSMUSG00000032249.15	ENSMUST00000085519.13	2113	7	0	994	0	37	multi-exon	FALSE	canonical	3	492	junction_5	26.6546848081575	7444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTATTTCCCCCCCTCC	NA	False	NA	8	True	AATAAA	-19	NA	62248610	62285100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
ENSMUSG00000032249.15_62284606_62285100_1	chr9	+	302	2	NNC	ENSMUSG00000032249.15	novel	629	4	NA	NA	3885	37	at_least_one_novel_splicesite	FALSE	canonical	2	38	junction_1	0	996	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTATTTCCCCCCCTCC	NA	False	NA	8	True	AATAAA	-19	NA	62284605	62285100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_62284646_62284838
ENSMUSG00000032254.11_61824562_61832289_1	chr9	-	1082	7	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	114	0	combination_of_known_junctions	FALSE	canonical	3	131	junction_5	61.2410991265035	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGTGTGGTGGCCATT	NA	False	NA	-3	True	AATAAA	-18	NA	61832289	61824561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251
ENSMUSG00000032262.14_83661577_83688305_1	chr9	-	2169	6	FSM	ENSMUSG00000032262.14	ENSMUST00000034796.14	3001	6	0	832	0	-832	multi-exon	FALSE	canonical	3	34	junction_4	3.49857113690718	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGGAGTCCTCTAATGTA	NA	False	NA	NA	False	AATAAA	-19	NA	83688305	83661576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_83662863_83665188_83665317_83667087_83667260_83670321_83670403_83672029_83672218_83687991
ENSMUSG00000032267.9_48896685_48934422_1	chr9	+	1514	13	NNC	ENSMUSG00000032267.9	novel	4109	24	NA	NA	0	-963	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	223.298551396008	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGCTGCTTTCTTTGGCT	NA	False	NA	NA	False	AAAAAG	-4	NA	48896684	48934422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48934290
ENSMUSG00000032267.9_48896685_48952868_1	chr9	+	3271	24	FSM	ENSMUSG00000032267.9	ENSMUST00000047349.8	4133	24	-80	942	0	-942	multi-exon	FALSE	canonical	3	612	junction_8	78.9995812484415	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCAGTCTGGTCTCCGGT	NA	False	NA	20	True	NA	NA	NA	48896684	48952868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935205_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
ENSMUSG00000032271.14_48503191_48516377_1	chr9	-	953	3	FSM	ENSMUSG00000032271.14	ENSMUST00000034808.12	1043	3	76	14	0	0	multi-exon	FALSE	canonical	3	43	junction_2	2.5	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTGTGTCTCTGAATGCA	NA	False	NA	-4	True	ATTAAA	-19	NA	48516377	48503190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_48503663_48514653_48514862_48516104
ENSMUSG00000032271.14_48513731_48516392_1	chr9	-	1419	2	FSM	ENSMUSG00000032271.14	ENSMUST00000128076.2	558	2	-15	-846	-15	846	multi-exon	FALSE	canonical	3	43	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATTTTATTTATTTTTAA	NA	False	NA	NA	False	AATAAA	-27	NA	48516392	48513730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_48514862_48516104
ENSMUSG00000032278.12_61863328_61934083_1	chr9	-	1203	8	FSM	ENSMUSG00000032278.12	ENSMUST00000034817.11	3566	8	55	2308	0	0	multi-exon	FALSE	canonical	1	1	junction_5	2.96922995583236	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGAATGTGCCAGGCTT	NA	False	NA	NA	False	NA	NA	NA	61934083	61863327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_61863570_61868810_61868953_61871009_61871107_61876062_61876190_61879907_61880114_61883353_61883482_61896274_61896421_61933968
ENSMUSG00000032279.12_54493765_54511229_1	chr9	+	1706	11	NNC	ENSMUSG00000032279.12	novel	1812	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	576.167241345775	3666	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGAATGATGTAATTTT	NA	False	NA	55	True	AATAAA	-22	NA	54493764	54511229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503296_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ENSMUSG00000032279.12_54493765_54511229_3	chr9	+	1774	12	NNC	ENSMUSG00000032279.12	novel	1812	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	729.906650886443	2813	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGAATGATGTAATTTT	NA	False	NA	55	True	AATAAA	-22	NA	54493764	54511229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_54493828_54497141_54497205_54499482_54499540_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ENSMUSG00000032279.12_54493765_54511229_4	chr9	+	1715	11	NNC	ENSMUSG00000032279.12	novel	1812	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	573.751766881811	4364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGAATGATGTAATTTT	NA	False	NA	55	True	AATAAA	-22	NA	54493764	54511229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_54493828_54497141_54497209_54499683_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ENSMUSG00000032279.12_54493765_54511229_5	chr9	+	1693	11	NNC	ENSMUSG00000032279.12	novel	1812	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	555.128237437081	700	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGAATGATGTAATTTT	NA	False	NA	55	True	AATAAA	-22	NA	54493764	54511229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_54493828_54497141_54497181_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ENSMUSG00000032279.12_54493765_54511229_6	chr9	+	1711	11	NNC	ENSMUSG00000032279.12	novel	1812	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	576.167241345775	2935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGAATGATGTAATTTT	NA	False	NA	55	True	AATAAA	-22	NA	54493764	54511229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502570_54503296_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ENSMUSG00000032293.9_54771073_54790041_1	chr9	+	803	4	ISM	ENSMUSG00000032293.9	ENSMUST00000034843.9	5770	22	0	29773	0	-21230	5prime_fragment	FALSE	canonical	3	205	junction_3	10.3387082795139	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTTGAGTCAGGATATT	2626	False	NA	NA	False	AATGAA	-39	NA	54771072	54790041	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_54771181_54772590_54772681_54788636_54788803_54789602
ENSMUSG00000032293.9_54771073_54817316_1	chr9	+	3272	22	FSM	ENSMUSG00000032293.9	ENSMUST00000034843.9	5770	22	0	2498	0	-2498	multi-exon	TRUE	canonical	3	193	junction_6	38.4690587449917	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGTTGAAGATTCATAT	2626	False	NA	4	True	AATAAA	-14	NA	54771072	54817316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_54771181_54772590_54772681_54788636_54788803_54789602_54789741_54791180_54791400_54793158_54793229_54793773_54793958_54794551_54794692_54798286_54798459_54799758_54799857_54802662_54802780_54803723_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
ENSMUSG00000032294.18_59563856_59586472_1	chr9	+	2041	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	205	186	0	0	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGATGACGACTTCTGGC	1869	False	NA	NA	False	GGGGCT	-26	NA	59563855	59586472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59563856_59586658_1	chr9	+	2221	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	7087.44312146489	7549	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1869	False	NA	20	True	AATAAA	-20	NA	59563855	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578867_59579013_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59563856_59586658_10	chr9	+	2237	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6815.91058406725	8278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1869	False	NA	20	True	AATAAA	-20	NA	59563855	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59563933_59572482_59572650_59573145_59573244_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579013_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59563856_59586658_11	chr9	+	2216	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	7085.08993662042	6848	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1869	False	NA	20	True	AATAAA	-20	NA	59563855	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576210_59576383_59577749_59578021_59578857_59579013_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59563856_59586658_12	chr9	+	2227	11	FSM	ENSMUSG00000032294.18	ENSMUST00000163694.4	2041	11	0	-186	0	0	multi-exon	FALSE	canonical	3	941	junction_8	6644.99062151332	4145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1869	False	NA	20	True	AATAAA	-20	NA	59563855	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582311_59582479_59585326_59585509_59586010
ENSMUSG00000032294.18_59563856_59586658_13	chr9	+	2218	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	5360.55493862343	8833	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1869	False	NA	20	True	AATAAA	-20	NA	59563855	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579212_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59563856_59586658_14	chr9	+	2222	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7030.37900898664	6249	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1869	False	NA	20	True	AATAAA	-20	NA	59563855	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59563933_59572482_59572641_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579013_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59563856_59586658_16	chr9	+	2227	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6815.91058406725	6826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1869	False	NA	20	True	AATAAA	-20	NA	59563855	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59563933_59572482_59572650_59573145_59573244_59575841_59575964_59576195_59576383_59577749_59578021_59578857_59579013_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59563856_59586658_2	chr9	+	2220	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	6961.50973640057	8040	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1869	False	NA	20	True	AATAAA	-20	NA	59563855	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59563922_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579013_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59563856_59586658_3	chr9	+	2230	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	5360.55493862343	7217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1869	False	NA	20	True	AATAAA	-20	NA	59563855	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59578991_59579182_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59563856_59586658_4	chr9	+	2222	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	5360.55493862343	10961	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1869	False	NA	20	True	AATAAA	-20	NA	59563855	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579004_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59563856_59586658_5	chr9	+	2223	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	6942.97369719921	7250	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1869	False	NA	20	True	AATAAA	-20	NA	59563855	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59563933_59572490_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579013_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59563856_59586658_6	chr9	+	2216	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	5360.55493862343	4989	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1869	False	NA	20	True	AATAAA	-20	NA	59563855	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59578998_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59563856_59586658_7	chr9	+	2217	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	5361.07569056808	10640	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1869	False	NA	20	True	AATAAA	-20	NA	59563855	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582860_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59563856_59586658_8	chr9	+	2215	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	5337.10957447943	11083	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1869	False	NA	20	True	AATAAA	-20	NA	59563855	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586022
ENSMUSG00000032294.18_59563856_59586658_9	chr9	+	2221	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6815.91058406725	6469	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1869	False	NA	20	True	AATAAA	-20	NA	59563855	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575841_59575964_59576195_59576383_59577749_59578021_59578857_59579013_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59564523_59586658_1	chr9	+	2185	11	Fusion	ENSMUSG00000111394.2_ENSMUSG00000032294.18	novel	625	5	NA	NA	0	0	multi-exon	FALSE	canonical	0	0	junction_7	6949.01488629863	5997	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	2536	False	NA	20	True	AATAAA	-20	NA	59564522	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr9_+_59564554_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579013_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59564523_59586658_2	chr9	+	2212	11	Fusion	ENSMUSG00000111394.2_ENSMUSG00000032294.18	novel	625	5	NA	NA	0	0	multi-exon	FALSE	canonical	0	0	junction_7	6975.60285925166	5888	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	2536	False	NA	20	True	AATAAA	-20	NA	59564522	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr9_+_59564581_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579013_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59576314_59586658_1	chr9	+	1639	7	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	-2555	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7869.95408182284	4285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	9806	False	NA	20	True	AATAAA	-20	NA	59576313	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59576383_59577749_59578025_59578867_59579013_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59577957_59586658_1	chr9	+	1360	6	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	-912	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6756.1383348774	4697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	NA	False	NA	20	True	AATAAA	-20	NA	59577956	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59578021_59578857_59579013_59579212_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUSG00000032294.18_59586301_59586658_1	chr9	+	337	2	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	7432	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6053	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	510	False	NA	20	True	AATAAA	-20	NA	59586300	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_59586357_59586377
ENSMUSG00000032295.16_57038061_57049491_1	chr9	+	3218	26	FSM	ENSMUSG00000032295.16	ENSMUST00000160147.8	3820	26	87	515	0	0	multi-exon	FALSE	canonical	2	160	junction_17	33.744593641056	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATAATGGTGCCTTGCTGT	NA	False	NA	17	True	AATAAA	-18	NA	57038060	57049491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046131_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
ENSMUSG00000032299.11_57062321_57065600_1	chr9	-	725	7	NIC	ENSMUSG00000032299.11	novel	858	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_3	384.323829023853	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATGGGTCTTGCTTGCTT	6292	False	NA	-2	True	AATAAA	-17	NA	57065600	57062320	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_57062565_57062695_57062873_57063185_57063267_57063799_57063840_57064058_57064125_57064350_57064423_57065555
ENSMUSG00000032299.11_57062321_57065600_2	chr9	-	842	8	NNC	ENSMUSG00000032299.11	novel	858	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	376.107832995826	5642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATGGGTCTTGCTTGCTT	6292	False	NA	-2	True	AATAAA	-17	NA	57065600	57062320	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_57062557_57062690_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350_57064423_57065555
ENSMUSG00000032299.11_57062321_57065600_3	chr9	-	779	7	NIC	ENSMUSG00000032299.11	novel	858	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_5	406.295322258193	2528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATGGGTCTTGCTTGCTT	6292	False	NA	-2	True	AATAAA	-17	NA	57065600	57062320	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064350_57064423_57065555
ENSMUSG00000032301.14_54858099_54865314_2	chr9	+	1123	8	NNC	ENSMUSG00000032301.14	novel	1165	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	658.455552247617	2131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATGGTGAAAGGATACTT	NA	False	NA	2	True	AATAAA	-15	NA	54858098	54865314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_54858198_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862254_54863540_54863672_54864094_54864219_54864918
ENSMUSG00000032306.15_57451539_57460046_1	chr9	-	1606	7	NIC	ENSMUSG00000032306.15	novel	1780	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	97.3077877436105	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTCAGCCTTTGGTAT	8951	False	NA	-8	True	ATTAAA	-30	NA	57460046	57451538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_57452222_57452477_57452687_57455810_57455994_57456319_57456462_57457855_57458057_57459429_57459558_57459986
ENSMUSG00000032306.15_57451863_57460046_1	chr9	-	1456	8	FSM	ENSMUSG00000032306.15	ENSMUST00000034856.15	1780	8	0	324	0	-324	multi-exon	FALSE	canonical	3	201	junction_3	33.2393914333151	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCATGCCCAGGCTGGAC	8951	False	NA	-2	True	AGTAAA	-20	NA	57460046	57451862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_57452222_57452477_57452687_57453676_57453851_57455810_57455994_57456319_57456462_57457855_57458057_57459429_57459558_57459986
ENSMUSG00000032309.16_55116270_55131717_1	chr9	+	2043	7	NNC	ENSMUSG00000032309.16	novel	2112	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	464.422490842121	2565	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTTGTAATTATTGCT	NA	False	NA	11	True	AATAAA	-18	NA	55116269	55131717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_55116473_55116636_55116776_55121192_55121281_55122194_55122283_55125598_55125764_55128305_55128472_55130523
ENSMUSG00000032309.16_55116270_55159462_1	chr9	+	1782	8	NNC	ENSMUSG00000032309.16	novel	2112	7	NA	NA	0	27745	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	447.218615216225	544	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAACAAAACAAAACAC	NA	False	NA	NA	False	NA	NA	NA	55116269	55159462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523_55131406_55159419
ENSMUSG00000032311.18_55116270_55131456_1	chr9	-	1790	7	NIC	ENSMUSG00000032311.18	novel	1878	8	NA	NA	18289	11236	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	873	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCCGAGCTCCCTGAGC	NA	False	NA	NA	False	NA	NA	NA	55131456	55116269	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
ENSMUSG00000032311.18_55116270_55131717_1	chr9	-	2051	7	NIC	ENSMUSG00000032311.18	novel	2095	9	NA	NA	18028	11236	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3567	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCCGAGCTCCCTGAGC	NA	False	NA	NA	False	NA	NA	NA	55131717	55116269	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
ENSMUSG00000032311.18_55116270_55131717_2	chr9	-	2047	7	NNC	ENSMUSG00000032311.18	novel	2095	9	NA	NA	18028	11236	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2616	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCCGAGCTCCCTGAGC	NA	False	NA	NA	False	NA	NA	NA	55131717	55116269	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_55116465_55116636_55116780_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
ENSMUSG00000032314.15_55361792_55393999_1	chr9	-	568	6	ISM	ENSMUSG00000032314.15	ENSMUST00000034866.9	1392	12	25528	0	798	0	3prime_fragment	FALSE	canonical	3	1606	junction_4	55.9621300523845	1503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTACTATCAGAAACATGC	NA	False	NA	-13	True	AATAAA	-30	NA	55393999	55361791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_55362047_55368903_55368985_55372077_55372144_55389556_55389640_55392553_55392623_55393985
ENSMUSG00000032314.15_55361792_55419446_1	chr9	-	1164	11	NIC	ENSMUSG00000032314.15	novel	1392	12	NA	NA	-42	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_10	494.167593028924	2500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTACTATCAGAAACATGC	NA	False	NA	-13	True	AATAAA	-30	NA	55419446	55361791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_55362047_55368903_55368985_55372077_55372144_55389556_55389640_55392553_55392623_55393985_55394088_55394683_55394795_55396113_55396214_55402845_55402929_55403025_55403108_55419314
ENSMUSG00000032314.15_55361792_55419446_2	chr9	-	1316	12	NNC	ENSMUSG00000032314.15	novel	1392	12	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	490.332927881954	5987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTACTATCAGAAACATGC	NA	False	NA	-13	True	AATAAA	-30	NA	55419446	55361791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_55362047_55368903_55368985_55372077_55372144_55389556_55389640_55392553_55392623_55393985_55394088_55394683_55394795_55396113_55396214_55402845_55402929_55403020_55403108_55407301_55407449_55419314
ENSMUSG00000032314.15_55361792_55419446_3	chr9	-	1304	12	NIC	ENSMUSG00000032314.15	novel	1392	12	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	491.447633893484	5919	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTACTATCAGAAACATGC	NA	False	NA	-13	True	AATAAA	-30	NA	55419446	55361791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_55362047_55368903_55368985_55372077_55372144_55389556_55389640_55392553_55392623_55393985_55394081_55394683_55394795_55396113_55396214_55402845_55402929_55403025_55403108_55407301_55407449_55419314
ENSMUSG00000032314.15_55381821_55419446_1	chr9	-	1028	10	NIC	ENSMUSG00000032314.15	novel	828	8	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_1	512.416304517921	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTATGATTTATTACT	NA	False	NA	NA	False	ATTAAA	-33	NA	55419446	55381820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_55381940_55389556_55389640_55392553_55392623_55393985_55394088_55394683_55394795_55396113_55396214_55402845_55402929_55403025_55403108_55407301_55407449_55419314
ENSMUSG00000032316.9_57657995_57672397_1	chr9	-	1650	12	NIC	ENSMUSG00000032316.9	novel	2496	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	91.1213884772205	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCCCCTGGTACCAGTGT	9814	False	NA	-12	True	AATAAA	-18	NA	57672397	57657994	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57668106_57668324_57668998_57669151_57672356
ENSMUSG00000032316.9_57657995_57672397_2	chr9	-	1784	13	NNC	ENSMUSG00000032316.9	novel	2496	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_12	94.4161885836675	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCCCCTGGTACCAGTGT	9814	False	NA	-12	True	AATAAA	-18	NA	57672397	57657994	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672319
ENSMUSG00000032316.9_57657995_57672397_3	chr9	-	1747	13	FSM	ENSMUSG00000032316.9	ENSMUST00000065330.8	2496	13	746	3	0	0	multi-exon	FALSE	canonical	3	232	junction_10	47.1024297556813	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCCCCTGGTACCAGTGT	9814	False	NA	-12	True	AATAAA	-18	NA	57672397	57657994	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
ENSMUSG00000032324.12_56043168_56068237_1	chr9	-	1612	7	FSM	ENSMUSG00000032324.12	ENSMUST00000034876.10	1716	7	104	0	-33	0	multi-exon	FALSE	canonical	3	718	junction_1	24.1522945769824	2416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGTACATTTTAATTATT	NA	False	NA	-3	True	AATAAA	-17	NA	56068237	56043167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_56044020_56052772_56052857_56053058_56053212_56053797_56053900_56054369_56054445_56054670_56054863_56068083
ENSMUSG00000032328.13_79678082_79700712_1	chr9	-	1801	7	FSM	ENSMUSG00000032328.13	ENSMUST00000034878.12	3658	7	0	1857	0	1752	multi-exon	FALSE	canonical	3	408	junction_2	27.5282682992511	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTGTCGTGTGTAAAG	NA	False	NA	-4	True	AATAAA	-14	NA	79700712	79678081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_79678762_79681374_79681585_79682383_79682534_79683434_79683523_79684505_79684614_79687822_79687931_79700255
ENSMUSG00000032330.8_79662688_79666995_1	chr9	-	449	4	FSM	ENSMUSG00000032330.8	ENSMUST00000034881.8	659	4	165	45	-3	0	multi-exon	FALSE	canonical	3	5621	junction_3	439.918426781855	67395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTCTCCCTTTTCACT	NA	False	NA	-14	True	AATAAA	-16	NA	79666995	79662687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_79662888_79663558_79663644_79665771_79665862_79666921
ENSMUSG00000032330.8_79662688_79666995_2	chr9	-	443	4	NNC	ENSMUSG00000032330.8	novel	659	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	1	263	junction_1	2814.19651055146	57738	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTCTCCCTTTTCACT	NA	False	NA	-14	True	AATAAA	-16	NA	79666995	79662687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_79662882_79663558_79663644_79665771_79665862_79666921
ENSMUSG00000032336.18_58489690_58560161_1	chr9	+	1887	7	NIC	ENSMUSG00000032336.18	novel	2024	8	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_5	144.809836989373	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGAATAATACTCTTTA	17	False	NA	NA	False	AATAAA	-16	NA	58489689	58560161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58558540_58558616_58559141
ENSMUSG00000032336.18_58489690_58560161_2	chr9	+	1906	7	NNC	ENSMUSG00000032336.18	novel	2024	8	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_5	144.809836989373	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGAATAATACTCTTTA	17	False	NA	NA	False	AATAAA	-16	NA	58489689	58560161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58558521_58558616_58559141
ENSMUSG00000032336.18_58489690_58560161_3	chr9	+	1791	8	FSM	ENSMUSG00000032336.18	ENSMUST00000176896.8	841	8	-34	-916	0	0	multi-exon	FALSE	canonical	3	20	junction_5	128.573492046933	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGAATAATACTCTTTA	17	False	NA	NA	False	AATAAA	-16	NA	58489689	58560161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58550968_58557779_58557802_58558540_58558616_58559141
ENSMUSG00000032336.18_58489690_58560161_5	chr9	+	1909	8	FSM	ENSMUSG00000032336.18	ENSMUST00000085651.12	2024	8	115	0	0	0	multi-exon	FALSE	canonical	3	310	junction_5	36.1815151813233	789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGAATAATACTCTTTA	17	False	NA	NA	False	AATAAA	-16	NA	58489689	58560161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58557779_58557802_58558540_58558616_58559141
ENSMUSG00000032336.18_58560164_58648842_1	chr9	+	858	6	NIC	ENSMUSG00000032336.18	novel	4531	5	NA	NA	905	83604	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	4209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCCCGCCTCCACGTGA	NA	False	NA	NA	False	NA	NA	NA	58560163	58648842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_58560390_58565039_58565127_58567456_58567655_58573115_58573200_58619298_58619389_58648669
ENSMUSG00000032336.18_58560164_58648842_2	chr9	+	984	7	NNC	ENSMUSG00000032336.18	novel	4531	5	NA	NA	905	83604	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	432	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCCCGCCTCCACGTGA	NA	False	NA	NA	False	NA	NA	NA	58560163	58648842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_58560390_58565039_58565127_58567456_58567655_58571718_58571845_58573115_58573200_58619298_58619389_58648669
ENSMUSG00000032336.18_58560164_58648842_3	chr9	+	978	7	NNC	ENSMUSG00000032336.18	novel	4531	5	NA	NA	905	83604	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	259	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCCCGCCTCCACGTGA	NA	False	NA	NA	False	NA	NA	NA	58560163	58648842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_58560390_58561961_58562082_58565039_58565127_58567456_58567655_58573115_58573200_58619298_58619389_58648669
ENSMUSG00000032336.18_58560164_58648842_4	chr9	+	774	5	NIC	ENSMUSG00000032336.18	novel	4531	5	NA	NA	905	83604	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCCCGCCTCCACGTGA	NA	False	NA	NA	False	NA	NA	NA	58560163	58648842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_58560390_58565039_58565127_58567456_58567655_58619298_58619389_58648669
ENSMUSG00000032342.14_78368113_78381434_1	chr9	+	1022	5	ISM	ENSMUSG00000032342.14	ENSMUST00000034896.13	2366	12	12623	0	-3868	0	3prime_fragment	FALSE	canonical	3	57	junction_2	14.8828760661372	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTAGGTGATTTTACG	2052	False	NA	19	True	AATAAA	-18	NA	78368112	78381434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_78368320_78368801_78368974_78372165_78372285_78377912_78378074_78381071
ENSMUSG00000032346.8_78284730_78285684_1	chr9	-	476	3	FSM	ENSMUSG00000032346.8	ENSMUST00000034900.8	2138	3	323	1339	323	-1339	multi-exon	FALSE	canonical	3	1945	junction_2	79.5	3920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGGTTTGATCACAT	NA	False	NA	-9	True	TATAAA	-16	NA	78285684	78284729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_78284974_78285256_78285440_78285635
ENSMUSG00000032346.8_78284730_78285835_1	chr9	-	627	3	FSM	ENSMUSG00000032346.8	ENSMUST00000034900.8	2138	3	172	1339	172	-1339	multi-exon	FALSE	canonical	3	1945	junction_2	79.5	33079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGGTTTGATCACAT	NA	False	NA	-9	True	TATAAA	-16	NA	78285835	78284729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_78284974_78285256_78285440_78285635
ENSMUSG00000032346.8_78284730_78286007_1	chr9	-	799	3	FSM	ENSMUSG00000032346.8	ENSMUST00000034900.8	2138	3	0	1339	0	-1339	multi-exon	FALSE	canonical	3	1945	junction_2	79.5	36529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGGTTTGATCACAT	NA	False	NA	-9	True	TATAAA	-16	NA	78286007	78284729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_78284974_78285256_78285440_78285635
ENSMUSG00000032366.16_66930561_66951071_1	chr9	-	907	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113696.8	1714	8	118	689	-11	-657	multi-exon	FALSE	canonical	3	370	junction_1	100.853500541273	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTCAATGCGTTTTTTT	NA	False	NA	-7	True	TTTAAA	-19	NA	66951071	66930560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUSG00000032366.16_66935174_66951189_1	chr9	-	1217	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113684.8	887	9	-174	-156	0	0	multi-exon	FALSE	canonical	3	173	junction_1	167.222110903433	895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGGTACTTTTTTATT	NA	False	NA	1	True	AATAAA	-22	NA	66951189	66935173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUSG00000032366.16_66935248_66951071_1	chr9	-	946	8	NIC	ENSMUSG00000032366.16	novel	887	9	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	2	15	junction_1	205.517266765534	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATTCTTTTACTCCTTA	NA	False	NA	-8	True	AATAAA	-21	NA	66951071	66935247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_66935450_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUSG00000032366.16_66935248_66951211_1	chr9	-	1165	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113684.8	887	9	-196	-82	-22	0	multi-exon	FALSE	canonical	3	173	junction_1	167.222110903433	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATTCTTTTACTCCTTA	NA	False	NA	-8	True	AATAAA	-21	NA	66951211	66935247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUSG00000032366.16_66936130_66951189_1	chr9	-	1757	8	NIC	ENSMUSG00000032366.16	novel	1797	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	209	junction_4	194.584329339466	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTTGGAAGTTAGTGGT	NA	False	NA	-9	True	AATAAA	-15	NA	66951189	66936129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUSG00000032369.14_92132265_92154034_2	chr9	+	1524	8	NNC	ENSMUSG00000032369.14	novel	2302	9	NA	NA	-130	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	138.731424570158	1637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGATGTTACTTTACAA	NA	False	NA	NA	False	NA	NA	NA	92132264	92154034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_92132418_92141326_92141408_92145085_92145335_92146698_92146742_92148443_92148665_92148764_92148927_92151867_92152030_92153581
ENSMUSG00000032369.14_92132395_92154034_1	chr9	+	1394	8	NNC	ENSMUSG00000032369.14	novel	1471	9	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	138.731424570158	1139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGATGTTACTTTACAA	NA	False	NA	NA	False	NA	NA	NA	92132394	92154034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_92132418_92141326_92141408_92145085_92145335_92146698_92146742_92148443_92148665_92148764_92148927_92151867_92152030_92153581
ENSMUSG00000032370.9_66862675_66863210_1	chr9	-	501	2	NNC	ENSMUSG00000032370.9	novel	2031	6	NA	NA	19492	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	304	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGGCACTTTTCAGT	NA	False	NA	NA	False	AATAAA	-11	NA	66863210	66862674	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_66862842_66862876
ENSMUSG00000032370.9_66862675_66863210_2	chr9	-	501	2	NNC	ENSMUSG00000032370.9	novel	2031	6	NA	NA	19492	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	336	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGGCACTTTTCAGT	NA	False	NA	NA	False	AATAAA	-11	NA	66863210	66862674	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_66862850_66862884
ENSMUSG00000032374.15_92485047_92490481_1	chr9	+	1866	6	ISM	ENSMUSG00000032374.15	ENSMUST00000160359.2	3663	20	60730	-8	1652	0	3prime_fragment	TRUE	canonical	3	65	junction_1	8.31865373723417	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGCCTCTCTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	92485046	92490481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_92485115_92486831_92486898_92487425_92487531_92488560_92488708_92488816_92488943_92489127
ENSMUSG00000032381.6_66033893_66046239_1	chr9	+	1192	4	NIC	ENSMUSG00000032381.6	novel	1240	5	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	323.837750870538	2699	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCACCTTAGGTTTTTA	1383	False	NA	19	True	AATAAA	-20	NA	66033892	66046239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_66034253_66039808_66039974_66043583_66043630_66045618
ENSMUSG00000032381.6_66034102_66046239_1	chr9	+	983	4	NIC	ENSMUSG00000032381.6	novel	1240	5	NA	NA	209	2	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	323.837750870538	1467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCACCTTAGGTTTTTA	1592	False	NA	19	True	AATAAA	-20	NA	66034101	66046239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_66034253_66039808_66039974_66043583_66043630_66045618
ENSMUSG00000032381.6_66034102_66046239_2	chr9	+	1033	5	FSM	ENSMUSG00000032381.6	ENSMUST00000034945.6	1240	5	209	-2	209	2	multi-exon	FALSE	canonical	3	677	junction_3	21.6376408140999	2275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCACCTTAGGTTTTTA	1592	False	NA	19	True	AATAAA	-20	NA	66034101	66046239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_66034253_66039808_66039974_66040713_66040764_66043583_66043630_66045618
ENSMUSG00000032383.8_65967504_65973905_1	chr9	+	896	5	NNC	ENSMUSG00000032383.8	novel	892	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1005.05086935936	16091	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGGGTGTGGGCTGTGT	1565	False	NA	16	True	AATAAA	-16	NA	65967503	65973905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_65967683_65968748_65968863_65970270_65970365_65972773_65972954_65973576
ENSMUSG00000032386.16_65739041_65792337_2	chr9	-	3395	13	FSM	ENSMUSG00000032386.16	ENSMUST00000117083.2	1999	13	1	-1397	0	0	multi-exon	TRUE	canonical	3	144	junction_4	28.3474229673332	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGGTTGGAAGTTCTCT	NA	False	NA	-11	True	AATAAA	-28	NA	65792337	65739040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
ENSMUSG00000032386.16_65740642_65792337_1	chr9	-	1794	13	FSM	ENSMUSG00000032386.16	ENSMUST00000117083.2	1999	13	1	204	0	-204	multi-exon	FALSE	canonical	3	144	junction_4	28.3474229673332	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACATAGTGGAGTCTTGTG	NA	False	NA	NA	False	AATAAA	-31	NA	65792337	65740641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
ENSMUSG00000032387.16_65536930_65567808_1	chr9	+	1915	9	NIC	ENSMUSG00000032387.16	novel	1803	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	108	junction_1	514.959813359256	1978	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTCTGATTTTTGCTTC	NA	False	NA	14	True	AATAAA	-14	NA	65536929	65567808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_65537005_65537987_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
ENSMUSG00000032388.8_65368235_65394470_1	chr9	+	1392	9	FSM	ENSMUSG00000032388.8	ENSMUST00000034955.8	2680	9	6	1282	0	-1282	multi-exon	FALSE	canonical	3	680	junction_7	65.1440711039769	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTCTCCACTCTGTTCAT	7182	False	NA	34	True	TTTAAA	-41	NA	65368234	65394470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_65368437_65372545_65372633_65376056_65376219_65380919_65381001_65383121_65383268_65387660_65387770_65389142_65389251_65391723_65391865_65394114
ENSMUSG00000032388.8_65368235_65394738_1	chr9	+	1660	9	FSM	ENSMUSG00000032388.8	ENSMUST00000034955.8	2680	9	6	1014	0	-1014	multi-exon	FALSE	canonical	3	680	junction_7	65.1440711039769	813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGTGGCTTCTGTGATGA	7182	False	NA	11	True	AATAAA	-13	NA	65368234	65394738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_65368437_65372545_65372633_65376056_65376219_65380919_65381001_65383121_65383268_65387660_65387770_65389142_65389251_65391723_65391865_65394114
ENSMUSG00000032392.12_65121972_65145715_1	chr9	+	1697	7	FSM	ENSMUSG00000032392.12	ENSMUST00000069000.9	2482	7	0	785	0	2	multi-exon	FALSE	canonical	3	27	junction_1	17.0269394392142	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACCCAAGAGGGACTGTC	NA	False	NA	8	True	AATAAA	-31	NA	65121971	65145715	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_65122146_65122630_65122915_65133334_65133473_65137087_65137295_65140950_65141123_65143922_65144065_65145135
ENSMUSG00000032397.8_64188885_64211901_1	chr9	+	1042	8	FSM	ENSMUSG00000032397.8	ENSMUST00000034964.7	1211	8	-4	173	0	-173	multi-exon	FALSE	canonical	3	540	junction_1	675.401679425976	2414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTTTAGTAAGTCTGTT	9565	False	NA	21	True	AATACA	-24	NA	64188884	64211901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032397.8_64188885_64211901_2	chr9	+	1036	8	FSM	ENSMUSG00000032397.8	ENSMUST00000216594.2	1841	8	0	805	0	-173	multi-exon	FALSE	canonical	3	410	junction_1	719.77354715471	2017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTTTAGTAAGTCTGTT	9565	False	NA	21	True	AATACA	-24	NA	64188884	64211901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_64188935_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032397.8_64188885_64211901_3	chr9	+	1037	8	NIC	ENSMUSG00000032397.8	novel	1211	8	NA	NA	0	-173	combination_of_known_junctions	FALSE	canonical	3	673	junction_1	630.170951862611	2371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTTTAGTAAGTCTGTT	9565	False	NA	21	True	AATACA	-24	NA	64188884	64211901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_64188930_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032397.8_64188885_64211901_4	chr9	+	1031	8	NIC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	0	-173	combination_of_known_junctions	FALSE	canonical	3	479	junction_1	696.204344855674	1244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTTTAGTAAGTCTGTT	9565	False	NA	21	True	AATACA	-24	NA	64188884	64211901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_64188930_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032397.8_64188885_64212076_1	chr9	+	1212	8	NIC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	673	junction_1	630.170951862611	11904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCAGGATTTGAGTTTCT	9565	False	NA	16	True	AATAAA	-16	NA	64188884	64212076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_64188930_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032397.8_64188885_64212076_2	chr9	+	1211	8	FSM	ENSMUSG00000032397.8	ENSMUST00000216594.2	1841	8	0	630	0	2	multi-exon	FALSE	canonical	3	410	junction_1	719.77354715471	11450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCAGGATTTGAGTTTCT	9565	False	NA	16	True	AATAAA	-16	NA	64188884	64212076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_64188935_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032397.8_64188885_64212076_3	chr9	+	1206	8	NIC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	479	junction_1	696.204344855674	6527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCAGGATTTGAGTTTCT	9565	False	NA	16	True	AATAAA	-16	NA	64188884	64212076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_64188930_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUSG00000032398.8_64086556_64089694_1	chr9	+	508	3	FSM	ENSMUSG00000032398.8	ENSMUST00000034965.8	1228	3	0	720	0	-720	multi-exon	FALSE	canonical	3	413	junction_2	26	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGAGTTTGGAGCCCCA	1628	False	NA	NA	False	NA	NA	NA	64086555	64089694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_64086703_64087780_64087871_64089423
ENSMUSG00000032398.8_64086556_64089943_1	chr9	+	757	3	FSM	ENSMUSG00000032398.8	ENSMUST00000034965.8	1228	3	0	471	0	-471	multi-exon	FALSE	canonical	3	413	junction_2	26	3967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTTGATTTTTTTCT	1628	False	NA	7	True	AATAAA	-3	NA	64086555	64089943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_64086703_64087780_64087871_64089423
ENSMUSG00000032399.9_64080657_64085801_1	chr9	+	1391	10	FSM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	0	147	0	-147	multi-exon	FALSE	canonical	3	16882	junction_3	1427.06559842995	176557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	38	True	AATAAA	-20	NA	64080656	64085801	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
ENSMUSG00000032399.9_64085188_64085801_1	chr9	+	409	2	ISM	ENSMUSG00000032399.9	ENSMUST00000213760.2	596	4	771	-249	771	-147	3prime_fragment	FALSE	canonical	3	19805	junction_1	0	45888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	260	False	NA	38	True	AATAAA	-20	NA	64085187	64085801	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_64085300_64085504
ENSMUSG00000032401.16_64044426_64080185_1	chr9	+	2756	19	NIC	ENSMUSG00000032401.16	novel	2171	14	NA	NA	15109	34785	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	732	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGAACTGCGCGCCCAG	NA	False	NA	NA	False	NA	NA	NA	64044425	64080185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
ENSMUSG00000032401.16_64044994_64080185_1	chr9	+	2188	19	NIC	ENSMUSG00000032401.16	novel	2171	14	NA	NA	15677	34785	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	294	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGAACTGCGCGCCCAG	NA	False	NA	NA	False	NA	NA	NA	64044993	64080185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
ENSMUSG00000032412.9_96214708_96246311_1	chr9	-	1810	7	FSM	ENSMUSG00000032412.9	ENSMUST00000034983.7	1994	7	184	0	184	0	multi-exon	FALSE	canonical	3	621	junction_2	81.5754592727222	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAACACATGATGGAGT	NA	False	NA	-10	True	AATAAA	-41	NA	96246311	96214707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_96215748_96217431_96217516_96220711_96220763_96222254_96222440_96225320_96225429_96227817_96227947_96246098
ENSMUSG00000032412.9_96214708_96246368_1	chr9	-	1867	7	FSM	ENSMUSG00000032412.9	ENSMUST00000034983.7	1994	7	127	0	127	0	multi-exon	FALSE	canonical	3	621	junction_2	81.5754592727222	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAACACATGATGGAGT	NA	False	NA	-10	True	AATAAA	-41	NA	96246368	96214707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_96215748_96217431_96217516_96220711_96220763_96222254_96222440_96225320_96225429_96227817_96227947_96246098
ENSMUSG00000032412.9_96215097_96246368_1	chr9	-	1478	7	FSM	ENSMUSG00000032412.9	ENSMUST00000034983.7	1994	7	127	389	127	-389	multi-exon	FALSE	canonical	3	621	junction_2	81.5754592727222	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTGCTTCTGCGCATGT	NA	False	NA	-6	True	AATAAA	-16	NA	96246368	96215096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_96215748_96217431_96217516_96220711_96220763_96222254_96222440_96225320_96225429_96227817_96227947_96246098
ENSMUSG00000032413.13_96461908_96513589_1	chr9	-	845	8	NNC	ENSMUSG00000032413.13	novel	5813	24	NA	NA	0	-7967	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	17.5324771524745	106	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTAGTCTTTTTTCATA	NA	False	NA	-4	True	AATAAA	-21	NA	96513589	96461907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_96462029_96462539_96462613_96464795_96464880_96474002_96474080_96484765_96484861_96488145_96488250_96493434_96493553_96513416
ENSMUSG00000032417.11_86454044_86456952_1	chr9	+	1220	3	FSM	ENSMUSG00000032417.11	ENSMUST00000185566.7	1054	3	0	-166	0	0	multi-exon	FALSE	canonical	3	38	junction_1	7	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAACTTGTCTCAAGTCCAA	NA	False	NA	6	True	AATAAA	-19	NA	86454043	86456952	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_86454111_86454889_86455117_86456026
ENSMUSG00000032418.16_86463424_86469670_1	chr9	-	1760	3	NNC	ENSMUSG00000032418.16	novel	3288	14	NA	NA	31087	0	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_2	172.5	205	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCGTAAATGTCATTTTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	86469670	86463423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_86464961_86469015_86469115_86469546
ENSMUSG00000032418.16_86463814_86469670_1	chr9	-	1370	3	NNC	ENSMUSG00000032418.16	novel	1055	8	NA	NA	31087	-355	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_2	172.5	113	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGCCTTTCCCAGGTGGT	NA	False	NA	NA	False	ATTAAA	-40	NA	86469670	86463813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_86464961_86469015_86469115_86469546
ENSMUSG00000032418.16_86464448_86469670_1	chr9	-	736	3	NNC	ENSMUSG00000032418.16	novel	1055	8	NA	NA	31087	291	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_2	172.5	100	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGCCTACAGTTCTTT	NA	False	NA	NA	False	AATAAA	-25	NA	86469670	86464447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_86464961_86469015_86469115_86469546
ENSMUSG00000032423.13_88334490_88338570_1	chr9	-	2014	2	ISM	ENSMUSG00000032423.13	ENSMUST00000174688.8	3176	9	24248	0	24227	0	3prime_fragment	FALSE	canonical	3	723	junction_1	0	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGTTACTGGTATAGCT	NA	False	NA	-13	True	AATAAA	-19	NA	88338570	88334489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_88336349_88338415
ENSMUSG00000032423.13_88334742_88338570_1	chr9	-	1762	2	ISM	ENSMUSG00000032423.13	ENSMUST00000174688.8	3176	9	24248	252	24227	0	3prime_fragment	FALSE	canonical	3	723	junction_1	0	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGGCGAGTGTAACTT	NA	False	NA	-15	True	AATAAA	-18	NA	88338570	88334741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_88336349_88338415
ENSMUSG00000032423.13_88335991_88338570_1	chr9	-	513	2	ISM	ENSMUSG00000032423.13	ENSMUST00000172828.8	1925	11	25632	0	24227	0	3prime_fragment	FALSE	canonical	3	723	junction_1	0	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTAAGTAGATTTTTCC	NA	False	NA	-1	True	AATAAA	-28	NA	88338570	88335990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_88336349_88338415
ENSMUSG00000032423.13_88335991_88364249_1	chr9	-	2158	12	FSM	ENSMUSG00000032423.13	ENSMUST00000069221.12	9450	12	363	6929	0	0	multi-exon	FALSE	canonical	3	723	junction_1	80.8280493004688	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTAAGTAGATTTTTCC	NA	False	NA	-1	True	AATAAA	-28	NA	88364249	88335990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
ENSMUSG00000032423.13_88337631_88364249_1	chr9	-	2585	11	FSM	ENSMUSG00000032423.13	ENSMUST00000173801.8	2944	11	359	0	0	0	multi-exon	FALSE	canonical	3	754	junction_4	62.6802201655355	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTTTACAATTCGTTTT	NA	False	NA	NA	False	AATAAA	-34	NA	88364249	88337630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
ENSMUSG00000032431.7_114204202_114213906_1	chr9	-	951	5	ISM	ENSMUSG00000032431.7	ENSMUST00000084881.5	1674	7	5837	0	5837	0	3prime_fragment	FALSE	canonical	3	595	junction_4	28.9169068193678	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCTCTCCGTCCTTCCAG	NA	False	NA	NA	False	GATAAA	-20	NA	114213906	114204201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_114204651_114207107_114207192_114208977_114209124_114210653_114210783_114213763
ENSMUSG00000032434.10_114560241_114576143_1	chr9	+	1114	4	FSM	ENSMUSG00000032434.10	ENSMUST00000035007.10	3383	4	0	2269	0	-2269	multi-exon	FALSE	canonical	3	606	junction_3	12.8322510366134	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTCTGAGCCATGCATT	NA	False	NA	NA	False	NA	NA	NA	114560240	114576143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_114560442_114566250_114566428_114569126_114569226_114575506
ENSMUSG00000032436.18_114585904_114610917_1	chr9	-	915	6	NNC	ENSMUSG00000032436.18	novel	993	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	44	junction_1	525.219192337828	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTCCTTATTGCATGAGA	NA	False	NA	-14	True	AATAAA	-16	NA	114610917	114585903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_114586099_114586176_114586360_114587872_114587955_114590974_114591074_114592286_114592461_114610735
ENSMUSG00000032436.18_114585904_114611061_1	chr9	-	1137	5	FSM	ENSMUSG00000032436.18	ENSMUST00000035009.16	993	5	-144	0	-137	0	multi-exon	FALSE	canonical	3	1122	junction_1	123.353911571543	6023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTCCTTATTGCATGAGA	NA	False	NA	-14	True	AATAAA	-16	NA	114611061	114585903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_114586360_114587872_114587955_114590974_114591074_114592286_114592461_114610735
ENSMUSG00000032437.11_115072867_115079907_1	chr9	-	635	4	ISM	ENSMUSG00000032437.11	ENSMUST00000035010.10	4221	16	59582	1218	59582	-1218	3prime_fragment	FALSE	canonical	3	727	junction_2	45.7238085319527	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGTTTCTGATGTGTAA	NA	False	NA	-2	True	ATTAAA	-16	NA	115079907	115072866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_115073114_115075112_115075326_115077572_115077687_115079846
ENSMUSG00000032458.7_98445784_98451647_1	chr9	+	401	3	NNC	ENSMUSG00000032458.7	novel	3050	22	NA	NA	0	2278	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	385	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGGTTCCATTTTATTTA	NA	False	NA	NA	False	AATAAA	-16	NA	98445783	98451647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_98445877_98450045_98450184_98451477
ENSMUSG00000032458.7_98445784_98456379_1	chr9	+	1002	7	ISM	ENSMUSG00000032458.7	ENSMUST00000035033.7	3050	22	0	14056	0	-6896	5prime_fragment	FALSE	canonical	3	687	junction_6	32.6785692601266	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTCTAGTGTCTTTTTGA	NA	False	NA	NA	False	AATAAA	-18	NA	98445783	98456379	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118
ENSMUSG00000032459.10_98478355_98483713_1	chr9	-	1035	3	ISM	ENSMUSG00000032459.10	ENSMUST00000035034.10	1197	8	0	7572	0	-1126	5prime_fragment	FALSE	canonical	3	535	junction_1	10	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGGTTGTATTGGTCA	NA	False	NA	NA	False	NA	NA	NA	98483713	98478354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_98479038_98480187_98480352_98483525
ENSMUSG00000032463.11_98868454_98884074_1	chr9	+	1048	6	FSM	ENSMUSG00000032463.11	ENSMUST00000112911.9	803	6	27	-272	0	0	multi-exon	FALSE	canonical	3	19	junction_1	126.927695953247	3263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTGGGTTTGGTTTCATG	3572	False	NA	9	True	AATAAA	-23	NA	98868453	98884074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_98868566_98872967_98873025_98874153_98874287_98874565_98874795_98881019_98881070_98883607
ENSMUSG00000032468.12_99362146_99450720_1	chr9	-	2694	22	FSM	ENSMUSG00000032468.12	ENSMUST00000035043.12	4647	22	232	1721	0	-1721	multi-exon	TRUE	canonical	3	93	junction_7	54.8151294142266	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACATAGATTTTCTTTAT	NA	False	NA	1	True	AGTAAA	-27	NA	99450720	99362145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_99362831_99365152_99365247_99366018_99366092_99369916_99370013_99378203_99378300_99379295_99379446_99381345_99381439_99384564_99384652_99387317_99387400_99387702_99387786_99402539_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
ENSMUSG00000032468.12_99402032_99450720_1	chr9	-	1663	12	FSM	ENSMUSG00000032468.12	ENSMUST00000185524.7	2820	12	-18	1175	0	-1175	multi-exon	FALSE	canonical	3	193	junction_11	21.8011297000487	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTATGTTTAGTGAGTG	NA	False	NA	-2	True	AATAAA	-17	NA	99450720	99402031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
ENSMUSG00000032469.13_99457881_99466261_1	chr9	+	1939	8	FSM	ENSMUSG00000032469.13	ENSMUST00000066650.12	2261	8	29	293	0	-293	multi-exon	FALSE	canonical	3	227	junction_3	17.2933867270063	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATGACCATTTTTAAGAC	6435	False	NA	14	True	ATTAAA	-18	NA	99457880	99466261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_99458179_99458628_99458754_99460493_99460575_99461409_99461496_99462191_99462417_99464074_99464156_99464369_99464516_99465364
ENSMUSG00000032469.13_99457881_99466398_1	chr9	+	2076	8	FSM	ENSMUSG00000032469.13	ENSMUST00000066650.12	2261	8	29	156	0	-156	multi-exon	FALSE	canonical	3	227	junction_3	17.2933867270063	1082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTATTGGCTCTTGTATAT	6435	False	NA	NA	False	ATTAAA	-23	NA	99457880	99466398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_99458179_99458628_99458754_99460493_99460575_99461409_99461496_99462191_99462417_99464074_99464156_99464369_99464516_99465364
ENSMUSG00000032470.18_99269981_99302381_1	chr9	-	1370	6	NIC	ENSMUSG00000032470.18	novel	1167	6	NA	NA	-176	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_5	168.084978507896	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGCTGTTGTCTTCTTAA	2374	False	NA	21	True	GATAAA	-10	NA	99302381	99269980	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99302132
ENSMUSG00000032470.18_99270032_99302305_1	chr9	-	1243	6	NIC	ENSMUSG00000032470.18	novel	1190	6	NA	NA	-100	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_5	168.084978507896	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTGGCGAAGCCCCAAG	2450	False	NA	28	True	ATTAAA	-15	NA	99302305	99270031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99302132
ENSMUSG00000032470.18_99270032_99302446_1	chr9	-	1384	6	NIC	ENSMUSG00000032470.18	novel	1190	6	NA	NA	-241	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_5	168.084978507896	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTGGCGAAGCCCCAAG	2309	False	NA	28	True	ATTAAA	-15	NA	99302446	99270031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99302132
ENSMUSG00000032470.18_99270032_99304549_1	chr9	-	1191	6	NNC	ENSMUSG00000032470.18	novel	1190	6	NA	NA	-2344	0	at_least_one_novel_splicesite	FALSE	canonical	2	23	junction_5	197.183569295213	225	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTGGCGAAGCCCCAAG	206	False	NA	28	True	ATTAAA	-15	NA	99304549	99270031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99304428
ENSMUSG00000032475.16_100377056_100428175_1	chr9	-	1754	4	FSM	ENSMUSG00000032475.16	ENSMUST00000116522.8	4476	4	12	2710	0	0	multi-exon	FALSE	canonical	3	120	junction_2	6.34209919681348	705	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGATATTGCATCTGT	NA	False	NA	-40	True	AATAAA	-18	NA	100428175	100377055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_100377725_100379310_100380024_100390481_100390726_100428047
ENSMUSG00000032478.15_109661839_109672031_1	chr9	+	1015	7	NIC	ENSMUSG00000032478.15	novel	1074	7	NA	NA	0	7	combination_of_known_junctions	FALSE	canonical	3	14	junction_5	233.901688749782	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGCAGTACTCCTGTGC	NA	False	NA	14	True	AATAAA	-21	NA	109661838	109672031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_109661876_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109671029_109671156_109671519
ENSMUSG00000032478.15_109661839_109672031_2	chr9	+	1091	6	FSM	ENSMUSG00000032478.15	ENSMUST00000199758.5	599	6	-115	-377	0	7	multi-exon	FALSE	canonical	3	32	junction_4	239.071872038515	987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGCAGTACTCCTGTGC	NA	False	NA	14	True	AATAAA	-21	NA	109661838	109672031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_109661957_109662263_109662364_109664385_109664483_109668675_109668779_109670994_109671156_109671519
ENSMUSG00000032478.15_109661839_109672031_3	chr9	+	1131	7	FSM	ENSMUSG00000032478.15	ENSMUST00000200005.5	719	7	22	-434	0	7	multi-exon	FALSE	canonical	3	252	junction_1	126.972000413039	2755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGCAGTACTCCTGTGC	NA	False	NA	14	True	AATAAA	-21	NA	109661838	109672031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_109661957_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
ENSMUSG00000032478.15_109661839_109672031_4	chr9	+	1045	7	NNC	ENSMUSG00000032478.15	novel	1074	7	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_2	213.241191038588	1417	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGCAGTACTCCTGTGC	NA	False	NA	14	True	AATAAA	-21	NA	109661838	109672031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_109661876_109662263_109662364_109664390_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
ENSMUSG00000032478.15_109661839_109672184_1	chr9	+	1284	7	FSM	ENSMUSG00000032478.15	ENSMUST00000200005.5	719	7	22	-587	0	0	multi-exon	FALSE	canonical	3	252	junction_1	126.972000413039	3126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCAAAGTTCAGTGTAGAC	NA	False	NA	47	True	NA	NA	NA	109661838	109672184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_109661957_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
ENSMUSG00000032478.15_109662098_109672031_1	chr9	+	1179	6	FSM	ENSMUSG00000032478.15	ENSMUST00000200468.2	865	6	-12	-302	0	7	multi-exon	FALSE	canonical	3	493	junction_3	57.3431774494578	1915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGCAGTACTCCTGTGC	NA	False	NA	14	True	AATAAA	-21	NA	109662097	109672031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
ENSMUSG00000032481.18_110033346_110064359_1	chr9	+	1019	5	ISM	ENSMUSG00000032481.18	ENSMUST00000197984.5	3538	27	72241	0	18546	0	3prime_fragment	FALSE	canonical	3	1122	junction_2	49.1477364687327	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCATAGTTCCTGGCTGT	1143	False	NA	16	True	ATTAAA	-26	NA	110033345	110064359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_110033395_110035066_110035222_110042576_110042712_110050959_110051225_110063944
ENSMUSG00000032491.15_110450203_110453499_1	chr9	-	1055	5	NIC	ENSMUSG00000032491.15	novel	1223	5	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	2	9	junction_3	51.265851207212	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGGCTCCTTGGACC	8945	False	NA	-5	True	ATTAAA	-25	NA	110453499	110450202	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_110450806_110450907_110451051_110451139_110451183_110452154_110452304_110453382
ENSMUSG00000032491.15_110450203_110453499_2	chr9	-	1301	5	NNC	ENSMUSG00000032491.15	novel	1223	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	51.6786948364604	883	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGGCTCCTTGGACC	8945	False	NA	-5	True	ATTAAA	-25	NA	110453499	110450202	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_110450806_110450907_110451051_110451139_110451330_110452154_110452403_110453382
ENSMUSG00000032494.13_110768671_110775143_1	chr9	-	1847	6	NNC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1840.40045642246	13049	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	-15	True	AGTAAA	-21	NA	110775143	110768670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772316_110773254_110773312_110774891
ENSMUSG00000032494.13_110769311_110775165_1	chr9	-	1231	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	61	640	-3	0	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAGAGAAGAAAAACTAT	NA	False	NA	NA	False	NA	NA	NA	110775165	110769310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
ENSMUSG00000032494.13_110770613_110775165_1	chr9	-	889	6	NNC	ENSMUSG00000032494.13	novel	502	4	NA	NA	-3	812	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_1	1780.14781408736	167	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGGCTGGCCTGGATTT	NA	False	NA	NA	False	NA	NA	NA	110775165	110770612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_110770848_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
ENSMUSG00000032494.13_110772076_110775143_1	chr9	-	551	3	ISM	ENSMUSG00000032494.13	ENSMUST00000197460.5	1290	7	19	2765	0	-366	5prime_fragment	FALSE	canonical	3	4243	junction_1	150.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCATGTATGTCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	110775143	110772075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_110772322_110773258_110773312_110774891
ENSMUSG00000032495.9_110782239_110810929_1	chr9	+	1426	9	NNC	ENSMUSG00000032495.9	novel	520	4	NA	NA	-628	-2205	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	94.0634759085587	226	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGACGAATGCACATACTT	NA	False	NA	NA	False	GATAAA	-22	NA	110782238	110810929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_110782345_110786867_110787015_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
ENSMUSG00000032495.9_110782239_110811316_2	chr9	+	1813	9	NNC	ENSMUSG00000032495.9	novel	520	4	NA	NA	-628	-1818	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	94.0634759085587	1098	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGTATACTGTTTAT	NA	False	NA	NA	False	AAAAAG	-5	NA	110782238	110811316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_110782345_110786867_110787015_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
ENSMUSG00000032495.9_110782867_110811316_1	chr9	+	1797	9	NIC	ENSMUSG00000032495.9	novel	666	5	NA	NA	0	-1818	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	99.4054198723591	1142	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGTATACTGTTTAT	NA	False	NA	NA	False	AAAAAG	-5	NA	110782866	110811316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_110782957_110786867_110787015_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
ENSMUSG00000032495.9_110789533_110811316_1	chr9	+	1673	8	NNC	ENSMUSG00000032495.9	novel	520	4	NA	NA	-369	-1818	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	92.9191002091253	957	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGTATACTGTTTAT	NA	False	NA	NA	False	AAAAAG	-5	NA	110789532	110811316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_110789646_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
ENSMUSG00000032495.9_110789902_110811316_2	chr9	+	1371	6	NIC	ENSMUSG00000032495.9	novel	3657	9	NA	NA	0	-1818	combination_of_known_junctions	FALSE	canonical	3	86	junction_1	83.1033092000553	399	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGTATACTGTTTAT	NA	False	NA	NA	False	AAAAAG	-5	NA	110789901	110811316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_110790078_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
ENSMUSG00000032495.9_110789902_110811316_3	chr9	+	1382	6	NNC	ENSMUSG00000032495.9	novel	3657	9	NA	NA	0	-1818	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_2	118.401013509176	380	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGTATACTGTTTAT	NA	False	NA	NA	False	AAAAAG	-5	NA	110789901	110811316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_110790078_110795508_110795657_110799081_110799228_110808537_110808694_110809894_110810032_110810697
ENSMUSG00000032495.9_110789902_110811316_4	chr9	+	1254	5	NNC	ENSMUSG00000032495.9	novel	3657	9	NA	NA	0	-1818	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	137.697812255678	108	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGTATACTGTTTAT	NA	False	NA	NA	False	AAAAAG	-5	NA	110789901	110811316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_110790078_110799081_110799248_110808537_110808694_110809894_110810032_110810697
ENSMUSG00000032495.9_110789902_110811316_5	chr9	+	1548	7	NNC	ENSMUSG00000032495.9	novel	3657	9	NA	NA	0	-1818	at_least_one_novel_splicesite	FALSE	canonical	3	68	junction_4	82.1734277137216	253	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGTATACTGTTTAT	NA	False	NA	NA	False	AAAAAG	-5	NA	110789901	110811316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_110790078_110791582_110791740_110795508_110795646_110799081_110799248_110808537_110808694_110809894_110810032_110810697
ENSMUSG00000032495.9_110796730_110808682_1	chr9	+	1026	3	Genic_Genomic	ENSMUSG00000032495.9	novel	3657	9	NA	NA	6828	84	multi-exon	FALSE	non_canonical	0	0	junction_1	0	257	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCCTTTGAAGTGAGTACA	NA	False	NA	NA	False	NA	NA	NA	110796729	110808682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_110796927_110798439_110799208_110808621
ENSMUSG00000032498.10_111057323_111060043_1	chr9	-	654	4	ISM	ENSMUSG00000032498.10	ENSMUST00000135218.8	3762	18	40571	27	-27	0	3prime_fragment	FALSE	canonical	0	0	junction_3	180.765655538385	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTTTTTTTTTTTATA	2781	False	NA	-27	True	AATAAA	-15	NA	111060043	111057322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_111057695_111058907_111059022_111059310_111059404_111059968
ENSMUSG00000032498.10_111057323_111060043_2	chr9	-	660	4	NNC	ENSMUSG00000032498.10	novel	2754	19	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	180.765655538385	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTTTTTTTTTTTATA	2781	False	NA	-27	True	AATAAA	-15	NA	111060043	111057322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_111057695_111058907_111059022_111059310_111059404_111059962
ENSMUSG00000032498.10_111057323_111100602_1	chr9	-	2497	19	FSM	ENSMUSG00000032498.10	ENSMUST00000035079.10	2754	19	257	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	91.190277259512	971	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTTTTTTTTTTTATA	NA	False	NA	-27	True	AATAAA	-15	NA	111100602	111057322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_111057695_111058907_111059022_111059310_111059404_111059968_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111081931_111082045_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097377_111100476
ENSMUSG00000032500.11_111297388_111318188_1	chr9	+	1893	4	ISM	ENSMUSG00000032500.11	ENSMUST00000111879.5	3005	5	29239	-2	29239	2	3prime_fragment	FALSE	canonical	3	22	junction_1	4.96655480858378	224	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCTTGTTCAATGGTGG	7485	False	NA	NA	False	AATAAA	-22	NA	111297387	111318188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_111298384_111311685_111311819_111313984_111314153_111317592
ENSMUSG00000032500.11_111312815_111318186_1	chr9	+	841	3	NNC	ENSMUSG00000032500.11	novel	3005	5	NA	NA	44666	0	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	15	232	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGCCTTGTTCAATGGT	700	False	NA	NA	False	AATAAA	-20	NA	111312814	111318186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_111312894_111313984_111314153_111317592
ENSMUSG00000032500.11_111316189_111318186_1	chr9	+	658	2	NNC	ENSMUSG00000032500.11	novel	3005	5	NA	NA	48040	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	296	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGCCTTGTTCAATGGT	4074	False	NA	NA	False	AATAAA	-20	NA	111316188	111318186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_111316253_111317592
ENSMUSG00000032500.11_111316422_111318186_1	chr9	+	683	2	NNC	ENSMUSG00000032500.11	novel	3005	5	NA	NA	48273	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	0	158	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGCCTTGTTCAATGGT	4307	False	NA	NA	False	AATAAA	-20	NA	111316421	111318186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_111316511_111317592
ENSMUSG00000032500.11_111316477_111318186_1	chr9	+	708	2	NNC	ENSMUSG00000032500.11	novel	3005	5	NA	NA	48328	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	157	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGCCTTGTTCAATGGT	4362	False	NA	NA	False	AATAAA	-20	NA	111316476	111318186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_111316591_111317592
ENSMUSG00000032507.16_113807105_113855797_1	chr9	-	2102	15	FSM	ENSMUSG00000032507.16	ENSMUST00000035090.14	3464	15	32	1330	0	0	multi-exon	FALSE	canonical	3	21	junction_13	8.10139821643304	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGCATGTAGAATGGATG	NA	False	NA	-12	True	AGTAAA	-11	NA	113855797	113807104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_113808009_113808525_113808739_113813052_113813110_113813608_113813654_113814340_113814402_113815473_113815605_113818187_113818263_113818377_113818505_113819685_113819782_113819876_113819946_113829565_113829661_113832217_113832293_113832509_113832565_113847056_113847119_113855760
ENSMUSG00000032512.8_119723961_119754737_1	chr9	+	2913	19	FSM	ENSMUSG00000032512.8	ENSMUST00000036561.8	3845	19	17	915	0	-567	multi-exon	FALSE	canonical	3	235	junction_17	23.7904950415284	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGTTTGATATTTATATT	NA	False	NA	4	True	AGTAAA	-16	NA	119723960	119754737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774
ENSMUSG00000032513.9_119755654_119766618_1	chr9	-	2562	9	FSM	ENSMUSG00000032513.9	ENSMUST00000035099.9	3906	9	13	1331	-2	-1331	multi-exon	FALSE	canonical	3	103	junction_5	11.0898320546346	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTGTAACTAAAGCTTT	NA	False	NA	0	True	AATAAA	-19	NA	119766618	119755653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_119757103_119757292_119757446_119757878_119758030_119758616_119758828_119759038_119759170_119759285_119759373_119761686_119761891_119762327_119762409_119766523
ENSMUSG00000032518.7_119956855_119960625_1	chr9	+	1028	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	100	810	0	0	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	219100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956854	119960625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
ENSMUSG00000032518.7_119956855_119960625_2	chr9	+	1022	7	NNC	ENSMUSG00000032518.7	novel	1101	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1904.74457313543	194515	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956854	119960625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960071_119960232_119960465
ENSMUSG00000032519.12_119939440_119953391_1	chr9	+	1735	8	NIC	ENSMUSG00000032519.12	novel	961	8	NA	NA	0	-179	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	64.126469430592	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATCACCAGGGTGGAGAC	1760	False	NA	5	True	AATAAA	-30	NA	119939439	119953391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_119939639_119945567_119945690_119946518_119946604_119948948_119949072_119949322_119949503_119949738_119949914_119951159_119951327_119952707
ENSMUSG00000032519.12_119939440_119953391_2	chr9	+	1607	7	NNC	ENSMUSG00000032519.12	novel	1791	7	NA	NA	0	-179	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_5	55.4719648911852	447	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATCACCAGGGTGGAGAC	1760	False	NA	5	True	AATAAA	-30	NA	119939439	119953391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_119939639_119945567_119945690_119946518_119946604_119949322_119949503_119949738_119949914_119951164_119951327_119952707
ENSMUSG00000032519.12_119939440_119953391_3	chr9	+	1612	7	FSM	ENSMUSG00000032519.12	ENSMUST00000035106.12	1791	7	0	179	0	-179	multi-exon	FALSE	canonical	3	111	junction_3	17.3173002771474	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATCACCAGGGTGGAGAC	1760	False	NA	5	True	AATAAA	-30	NA	119939439	119953391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_119939639_119945567_119945690_119946518_119946604_119949322_119949503_119949738_119949914_119951159_119951327_119952707
ENSMUSG00000032526.12_121539431_121541987_1	chr9	+	517	3	FSM	ENSMUSG00000032526.12	ENSMUST00000215104.2	315	3	-35	-167	0	0	multi-exon	FALSE	canonical	2	7	junction_1	206	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTGTCCCATGTCAACT	NA	False	NA	11	True	AATAAA	-16	NA	121539430	121541987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_121539514_121539704_121539782_121541630
ENSMUSG00000032526.12_121539431_121541987_2	chr9	+	708	2	FSM	ENSMUSG00000032526.12	ENSMUST00000214535.2	1175	2	0	467	0	0	multi-exon	FALSE	canonical	3	419	junction_1	0	623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTGTCCCATGTCAACT	NA	False	NA	11	True	AATAAA	-16	NA	121539430	121541987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_121539782_121541630
ENSMUSG00000032526.12_121539533_121541987_1	chr9	+	606	2	FSM	ENSMUSG00000032526.12	ENSMUST00000214535.2	1175	2	102	467	0	0	multi-exon	FALSE	canonical	3	419	junction_1	0	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTGTCCCATGTCAACT	NA	False	NA	11	True	AATAAA	-16	NA	121539532	121541987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_121539782_121541630
ENSMUSG00000032526.12_121539533_121541987_2	chr9	+	439	3	FSM	ENSMUSG00000032526.12	ENSMUST00000035113.11	577	3	138	0	0	0	multi-exon	FALSE	canonical	3	377	junction_1	21	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTGTCCCATGTCAACT	NA	False	NA	11	True	AATAAA	-16	NA	121539532	121541987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_121539538_121539704_121539782_121541630
ENSMUSG00000032534.19_102503495_102511441_1	chr9	-	440	4	NNC	ENSMUSG00000032534.19	novel	519	4	NA	NA	-7708	-7429	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	14656	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTCGCGGCGCTCTCAA	NA	False	NA	NA	False	NA	NA	NA	102511441	102503494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_102503546_102506742_102506777_102506961_102507088_102511212
ENSMUSG00000032534.19_102503495_102511441_2	chr9	-	492	4	NNC	ENSMUSG00000032534.19	novel	519	4	NA	NA	-7708	-7429	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10312	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTCGCGGCGCTCTCAA	NA	False	NA	NA	False	NA	NA	NA	102511441	102503494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_102503546_102506690_102506777_102506961_102507088_102511212
ENSMUSG00000032540.17_122180673_122208890_1	chr9	+	1458	7	FSM	ENSMUSG00000032540.17	ENSMUST00000156520.8	3157	7	0	1699	0	0	multi-exon	FALSE	canonical	3	74	junction_5	12.9925192151313	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAATTGTGATTTTTCA	NA	False	NA	15	True	AATAAA	-20	NA	122180672	122208890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_122180905_122194200_122194287_122196953_122197327_122204970_122205126_122206923_122207036_122207886_122208074_122208577
ENSMUSG00000032540.17_122180797_122208890_1	chr9	+	1334	7	FSM	ENSMUSG00000032540.17	ENSMUST00000156520.8	3157	7	124	1699	0	0	multi-exon	FALSE	canonical	3	74	junction_5	12.9925192151313	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAATTGTGATTTTTCA	NA	False	NA	15	True	AATAAA	-20	NA	122180796	122208890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_122180905_122194200_122194287_122196953_122197327_122204970_122205126_122206923_122207036_122207886_122208074_122208577
ENSMUSG00000032540.17_122180854_122208890_1	chr9	+	818	5	FSM	ENSMUSG00000032540.17	ENSMUST00000111497.5	2576	5	59	1699	0	0	multi-exon	FALSE	canonical	2	13	junction_1	33.7073804974519	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAATTGTGATTTTTCA	NA	False	NA	15	True	AATAAA	-20	NA	122180853	122208890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_122180905_122204970_122205126_122206923_122207036_122207886_122208074_122208577
ENSMUSG00000032540.17_122180854_122208890_2	chr9	+	1191	6	NIC	ENSMUSG00000032540.17	novel	1386	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	35.2363448728724	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAATTGTGATTTTTCA	NA	False	NA	15	True	AATAAA	-20	NA	122180853	122208890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_122180905_122196953_122197327_122204970_122205126_122206923_122207036_122207886_122208074_122208577
ENSMUSG00000032540.17_122180854_122210589_1	chr9	+	2976	7	FSM	ENSMUSG00000032540.17	ENSMUST00000156520.8	3157	7	181	0	0	0	multi-exon	FALSE	canonical	3	74	junction_5	12.9925192151313	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGGGTGAGCTGTGTGT	NA	False	NA	4	True	AATAAA	-17	NA	122180853	122210589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_122180905_122194200_122194287_122196953_122197327_122204970_122205126_122206923_122207036_122207886_122208074_122208577
ENSMUSG00000032551.8_122776600_122780065_1	chr9	-	915	3	FSM	ENSMUSG00000032551.8	ENSMUST00000035154.4	3361	3	0	2446	0	0	multi-exon	FALSE	canonical	3	36	junction_2	10	1047	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCTTAGTCACTGTTCT	NA	False	NA	NA	False	ATTAAA	-27	NA	122780065	122776599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_122777174_122777989_122778135_122779869
ENSMUSG00000032551.8_122776704_122780065_1	chr9	-	811	3	FSM	ENSMUSG00000032551.8	ENSMUST00000035154.4	3361	3	0	2550	0	-104	multi-exon	FALSE	canonical	3	36	junction_2	10	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTCTTTGTCCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	122780065	122776703	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_122777174_122777989_122778135_122779869
ENSMUSG00000032551.8_122777066_122780065_1	chr9	-	449	3	FSM	ENSMUSG00000032551.8	ENSMUST00000035154.4	3361	3	0	2912	0	426	multi-exon	FALSE	canonical	3	36	junction_2	10	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATGAAGATGATGTAAAT	NA	False	NA	NA	False	AAAAAG	-8	NA	122780065	122777065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_122777174_122777989_122778135_122779869
ENSMUSG00000032553.15_103066289_103079328_1	chr9	-	1754	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	97.1596624119289	1159	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCATTGAGTCAAATGAT	NA	False	NA	0	True	TATAAA	-31	NA	103079328	103066288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_103066696_103066939_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
ENSMUSG00000032553.15_103066289_103079328_2	chr9	-	1758	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	97.1596624119289	1230	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCATTGAGTCAAATGAT	NA	False	NA	0	True	TATAAA	-31	NA	103079328	103066288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_103066653_103066892_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
ENSMUSG00000032553.15_103066289_103079328_3	chr9	-	1756	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	97.1596624119289	1375	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCATTGAGTCAAATGAT	NA	False	NA	0	True	TATAAA	-31	NA	103079328	103066288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_103066703_103066944_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
ENSMUSG00000032553.15_103066289_103079328_4	chr9	-	1852	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	97.1596624119289	1492	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCATTGAGTCAAATGAT	NA	False	NA	0	True	TATAAA	-31	NA	103079328	103066288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_103066745_103066890_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
ENSMUSG00000032557.14_103924713_103940333_1	chr9	-	1489	12	FSM	ENSMUSG00000032557.14	ENSMUST00000035166.12	2404	12	0	915	0	136	multi-exon	FALSE	canonical	3	388	junction_1	40.2171790110061	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCATGTGTATCTTCAC	NA	False	NA	-35	True	AATAAA	-17	NA	103940333	103924712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
ENSMUSG00000032562.14_107491324_107512335_1	chr9	-	1601	9	FSM	ENSMUSG00000032562.14	ENSMUST00000192615.6	1777	9	176	0	176	0	multi-exon	FALSE	canonical	3	246	junction_1	364.681860496241	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCGTGTTCTTTTCTCCT	5001	False	NA	0	True	AATAAA	-24	NA	107512335	107491323	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_107491915_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618_107497662_107512298
ENSMUSG00000032562.14_107491324_107512335_2	chr9	-	1984	9	FSM	ENSMUSG00000032562.14	ENSMUST00000055704.12	2215	9	231	0	176	0	multi-exon	FALSE	canonical	3	1026	junction_1	123.439193026364	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCGTGTTCTTTTCTCCT	5001	False	NA	0	True	AATAAA	-24	NA	107512335	107491323	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_107492298_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618_107497662_107512298
ENSMUSG00000032563.17_104930469_104954665_1	chr9	+	1519	10	FSM	ENSMUSG00000032563.17	ENSMUST00000035177.15	3972	10	31	2422	0	0	multi-exon	FALSE	canonical	3	494	junction_1	31.6489229040682	1280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGTTGTGAAACAGAACC	NA	False	NA	20	True	ATTAAA	-17	NA	104930468	104954665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_104930712_104931619_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360_104952439_104954191
ENSMUSG00000032563.17_104930469_104954665_2	chr9	+	1513	10	NNC	ENSMUSG00000032563.17	novel	3972	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	171.847118389473	1267	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGTTGTGAAACAGAACC	NA	False	NA	20	True	ATTAAA	-17	NA	104930468	104954665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_104930712_104931619_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360_104952433_104954191
ENSMUSG00000032575.17_106746397_106769137_1	chr9	-	629	5	NIC	ENSMUSG00000032575.17	novel	357	3	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	394.142344210819	156	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAGGGAAAATGATCAATT	NA	False	NA	NA	False	AATAAA	-40	NA	106769137	106746396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_106746561_106747401_106747472_106767359_106767502_106768269_106768398_106769012
ENSMUSG00000032575.17_106765952_106769137_1	chr9	-	862	4	NNC	ENSMUSG00000032575.17	novel	2247	4	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	387.030862966881	6648	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGCACAGTATTCTGTCC	NA	False	NA	-11	True	ATTAAA	-24	NA	106769137	106765951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_106766425_106767359_106767502_106768269_106768398_106769018
ENSMUSG00000032579.15_107204909_107215531_1	chr9	-	1170	10	NIC	ENSMUSG00000032579.15	novel	2192	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_9	55.2618905142583	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAAATGGTGAGCCAGTA	NA	False	NA	-30	True	AGTAAA	-13	NA	107215531	107204908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107215479
ENSMUSG00000032579.15_107204909_107215531_2	chr9	-	1510	11	NNC	ENSMUSG00000032579.15	novel	2192	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_9	53.3310416174295	933	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAAATGGTGAGCCAGTA	NA	False	NA	-30	True	AGTAAA	-13	NA	107215531	107204908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107214237_107214578_107215479
ENSMUSG00000032579.15_107204909_107215531_3	chr9	-	1548	11	FSM	ENSMUSG00000032579.15	ENSMUST00000035196.14	2192	11	18	626	0	0	multi-exon	FALSE	canonical	3	133	junction_9	21.6296093353532	958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAAATGGTGAGCCAGTA	NA	False	NA	-30	True	AGTAAA	-13	NA	107215531	107204908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107214199_107214578_107215479
ENSMUSG00000032579.15_107204909_107215531_4	chr9	-	1301	10	NNC	ENSMUSG00000032579.15	novel	1888	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_9	57.3643327047972	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAAATGGTGAGCCAGTA	NA	False	NA	-30	True	AGTAAA	-13	NA	107215531	107204908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213994_107215479
ENSMUSG00000032582.15_107650758_107749932_1	chr9	-	2119	17	NIC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	80	junction_15	79.7133291473264	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTAAAGTTTTTTTTT	7601	False	NA	NA	False	AATAAA	-22	NA	107749932	107650757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107737547_107737659_107749847
ENSMUSG00000032582.15_107650758_107750028_1	chr9	-	2215	17	NIC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	80	junction_15	79.7133291473264	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTAAAGTTTTTTTTT	7505	False	NA	NA	False	AATAAA	-22	NA	107750028	107650757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107737547_107737659_107749847
ENSMUSG00000032583.8_107778587_107780338_1	chr9	+	999	3	ISM	ENSMUSG00000032583.8	ENSMUST00000035202.4	2042	6	13206	0	13206	0	3prime_fragment	FALSE	canonical	3	23	junction_1	5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTTTGTCATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-22	NA	107778586	107780338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_107779160_107779814_107779963_107780060
ENSMUSG00000032583.8_107778851_107780338_1	chr9	+	735	3	ISM	ENSMUSG00000032583.8	ENSMUST00000035202.4	2042	6	13470	0	13470	0	3prime_fragment	FALSE	canonical	3	23	junction_1	5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTTTGTCATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-22	NA	107778850	107780338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_107779160_107779814_107779963_107780060
ENSMUSG00000032586.10_107828166_107833856_1	chr9	+	999	2	ISM	ENSMUSG00000032586.10	ENSMUST00000192567.2	1949	4	0	1830	0	-1830	intron_retention	FALSE	canonical	3	343	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAGAAGAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	107828165	107833856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_107828372_107833063
ENSMUSG00000032586.10_107828166_107848729_1	chr9	+	1955	15	FSM	ENSMUSG00000032586.10	ENSMUST00000049348.9	2706	15	11	740	0	5	multi-exon	TRUE	canonical	3	256	junction_7	39.1366001255571	751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGCTGTATAAATTT	NA	False	NA	18	True	AATAAA	-19	NA	107828165	107848729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107838855_107839452_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
ENSMUSG00000032586.10_107828166_107848729_2	chr9	+	2553	14	NIC	ENSMUSG00000032586.10	novel	2706	15	NA	NA	0	5	intron_retention	FALSE	canonical	3	271	junction_2	36.9687217865663	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGCTGTATAAATTT	NA	False	NA	18	True	AATAAA	-19	NA	107828165	107848729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
ENSMUSG00000032589.15_107975774_107982094_1	chr9	-	1713	5	ISM	ENSMUSG00000032589.15	ENSMUST00000124763.2	7496	8	5518	2552	5518	-2552	3prime_fragment	TRUE	canonical	3	14	junction_1	4.12310562561766	45	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGGAGTTAATTGCAAACA	3821	False	NA	NA	False	AATAAA	-15	NA	107982094	107975773	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_107977097_107980388_107980482_107980862_107980918_107981142_107981275_107981984
ENSMUSG00000032589.15_107976277_107982094_1	chr9	-	1210	5	ISM	ENSMUSG00000032589.15	ENSMUST00000124763.2	7496	8	5518	3055	5518	-3055	3prime_fragment	FALSE	canonical	3	14	junction_1	4.12310562561766	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTTTTGTTGTTGTTGT	3821	False	NA	NA	False	NA	NA	NA	107982094	107976276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_107977097_107980388_107980482_107980862_107980918_107981142_107981275_107981984
ENSMUSG00000032594.12_107909272_107923380_1	chr9	+	1214	4	ISM	ENSMUSG00000032594.12	ENSMUST00000176566.2	786	5	7821	-574	0	38	3prime_fragment	FALSE	canonical	3	206	junction_3	40.5407887880287	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGGCTGTGACTGCT	2379	False	NA	74	True	TATAAA	-44	NA	107909271	107923380	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_107909409_107918103_107918286_107921923_107922100_107922661
ENSMUSG00000032599.13_108661021_108674892_1	chr9	+	998	4	FSM	ENSMUSG00000032599.13	ENSMUST00000192226.6	607	4	-43	-348	0	0	multi-exon	FALSE	canonical	3	46	junction_3	30.6847772609735	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGGCTCACCCACCATG	NA	False	NA	9	True	AATAAA	-23	NA	108661020	108674892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108661070_108673262_108673596_108673853_108673983_108674405
ENSMUSG00000032599.13_108661021_108675193_1	chr9	+	1093	3	FSM	ENSMUSG00000032599.13	ENSMUST00000194875.6	748	3	-43	-302	0	0	multi-exon	FALSE	canonical	2	13	junction_2	53	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTGTAGTTCTTTGG	NA	False	NA	NA	False	AATAAA	-21	NA	108661020	108675193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108661070_108673262_108673596_108674482
ENSMUSG00000032599.13_108661021_108675193_2	chr9	+	1299	4	FSM	ENSMUSG00000032599.13	ENSMUST00000192226.6	607	4	-43	-649	0	0	multi-exon	FALSE	canonical	3	46	junction_3	30.6847772609735	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTGTAGTTCTTTGG	NA	False	NA	NA	False	AATAAA	-21	NA	108661020	108675193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108661070_108673262_108673596_108673853_108673983_108674405
ENSMUSG00000032602.7_108539297_108561335_1	chr9	+	1278	9	FSM	ENSMUSG00000032602.7	ENSMUST00000035222.6	1783	9	0	505	0	-505	multi-exon	FALSE	canonical	3	619	junction_8	102.171118717571	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTTGGCCAAATTGCCA	5077	False	NA	29	True	AATAAA	-17	NA	108539296	108561335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108539532_108546964_108547058_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030
ENSMUSG00000032604.17_108385258_108393135_1	chr9	+	2437	24	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	115.302987073091	1295	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	13	True	AATAAA	-16	NA	108385257	108393135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386644_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
ENSMUSG00000032604.17_108385258_108393135_2	chr9	+	2515	23	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	0	intron_retention	FALSE	canonical	3	468	junction_2	38.846487444515	1023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	13	True	AATAAA	-16	NA	108385257	108393135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392432_108392994
ENSMUSG00000032604.17_108391950_108393135_1	chr9	+	457	4	ISM	ENSMUSG00000032604.17	ENSMUST00000207062.2	2150	20	5272	0	0	0	3prime_fragment	FALSE	canonical	3	524	junction_1	40.8438761899776	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	13	True	AATAAA	-16	NA	108391949	108393135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_108392073_108392165_108392233_108392305_108392432_108392994
ENSMUSG00000032606.8_108167643_108172523_1	chr9	+	944	6	FSM	ENSMUSG00000032606.8	ENSMUST00000035227.8	2133	6	15	1174	0	544	multi-exon	FALSE	canonical	3	101	junction_5	4.63033476111609	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACCGGTTCTAATTAGAA	NA	False	NA	NA	False	NA	NA	NA	108167642	108172523	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108167862_108170534_108170712_108171129_108171244_108171644_108171717_108172087_108172193_108172266
ENSMUSG00000032606.8_108167643_108172641_1	chr9	+	1062	6	FSM	ENSMUSG00000032606.8	ENSMUST00000035227.8	2133	6	15	1056	0	662	multi-exon	FALSE	canonical	3	101	junction_5	4.63033476111609	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTTGTTTTGACACT	NA	False	NA	NA	False	GATAAA	-22	NA	108167642	108172641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108167862_108170534_108170712_108171129_108171244_108171644_108171717_108172087_108172193_108172266
ENSMUSG00000032607.13_108174121_108179501_1	chr9	+	2132	8	NIC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	166	junction_4	16.1042521954765	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCTCTAGCTTCCTTG	NA	False	NA	21	True	AATAAA	-22	NA	108174120	108179501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
ENSMUSG00000032612.15_108225096_108269461_1	chr9	+	3335	22	FSM	ENSMUSG00000032612.15	ENSMUST00000035237.12	3662	22	44	283	0	3	multi-exon	FALSE	canonical	3	580	junction_19	65.884562002066	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGATGTTGTCCTCTAGTT	NA	False	NA	13	True	AGTAAA	-17	NA	108225095	108269461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108225218_108228108_108228237_108233609_108233741_108237293_108237421_108239759_108239906_108240035_108240098_108243028_108243170_108243959_108244078_108245017_108245192_108248099_108248259_108249760_108249986_108250805_108250890_108251422_108251518_108255634_108255827_108256463_108256553_108258526_108258752_108261283_108261355_108261595_108261715_108262005_108262156_108265475_108265580_108268178_108268268_108268877
ENSMUSG00000032612.15_108268179_108269461_1	chr9	+	673	2	FSM	ENSMUSG00000032612.15	ENSMUST00000194939.2	760	2	104	-17	104	3	multi-exon	FALSE	canonical	3	677	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGATGTTGTCCTCTAGTT	4101	False	NA	13	True	AGTAAA	-17	NA	108268178	108269461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108268268_108268877
ENSMUSG00000032612.15_108268179_108269725_1	chr9	+	937	2	FSM	ENSMUSG00000032612.15	ENSMUST00000194939.2	760	2	104	-281	104	6	multi-exon	FALSE	canonical	3	677	junction_1	0	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGTGCAGTGTGTGGCAT	4101	False	NA	45	True	CATAAA	-2	NA	108268178	108269725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108268268_108268877
ENSMUSG00000032621.9_103879637_103911014_1	chr13	-	2315	12	FSM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	102	1517	100	482	multi-exon	FALSE	canonical	3	148	junction_3	30.0305629441708	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTAAGACGTTTTCACG	10019	False	NA	NA	False	AATATA	-24	NA	103911014	103879636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_103880225_103881292_103881438_103885266_103885363_103888901_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
ENSMUSG00000032621.9_103879698_103889117_1	chr13	-	984	4	ISM	ENSMUSG00000032621.9	ENSMUST00000210489.2	6330	10	11973	3842	1055	421	3prime_fragment	FALSE	canonical	3	148	junction_3	30.8220700148449	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTGATGATGTGCTT	NA	False	NA	NA	False	AATATA	-1	NA	103889117	103879697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_103880225_103881292_103881438_103885266_103885363_103888901
ENSMUSG00000032621.9_103888710_103911014_1	chr13	-	1678	9	ISM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	102	10590	100	266	5prime_fragment	FALSE	canonical	3	167	junction_7	26.6760074786314	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCTGTTTCTGTTAATC	10019	False	NA	NA	False	NA	NA	NA	103911014	103888709	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
ENSMUSG00000032641.19_134846120_134864813_1	chr6	-	1672	4	FSM	ENSMUSG00000032641.19	ENSMUST00000203762.4	498	4	-82	-1092	-18	0	multi-exon	FALSE	canonical	2	12	junction_1	13.9124245031395	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAATTGATTTACTTAG	NA	False	NA	-18	True	ATTAAA	-17	NA	134864813	134846119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_134847407_134854179_134854298_134863853_134863900_134864592
ENSMUSG00000032641.19_134846120_134874850_1	chr6	-	1551	4	NIC	ENSMUSG00000032641.19	novel	1711	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_3	8.64098759787715	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAATTGATTTACTTAG	NA	False	NA	-18	True	ATTAAA	-17	NA	134874850	134846119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_134847407_134864592_134864749_134874124_134874177_134874794
ENSMUSG00000032641.19_134846120_134874850_2	chr6	-	1636	5	NIC	ENSMUSG00000032641.19	novel	1610	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	26.7348087705897	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAATTGATTTACTTAG	NA	False	NA	-18	True	ATTAAA	-17	NA	134874850	134846119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_134847446_134863853_134863900_134864592_134864749_134874124_134874177_134874794
ENSMUSG00000032666.17_151768336_151966063_1	chr1	-	1685	6	FSM	ENSMUSG00000032666.17	ENSMUST00000044581.14	9559	6	-187	8061	-187	318	multi-exon	FALSE	canonical	3	58	junction_2	7.73045923603508	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTCTTCTCCCATTCA	NA	False	NA	1	True	AATAAA	-21	NA	151966063	151768335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_151769184_151791232_151791294_151796797_151796875_151856176_151856272_151882295_151882519_151965682
ENSMUSG00000032673.6_29463042_29465031_1	chr11	-	750	2	FSM	ENSMUSG00000032673.6	ENSMUST00000039900.4	918	2	2	166	0	-166	multi-exon	FALSE	canonical	3	382	junction_1	0	1277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGGGAGCCAGGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	29465031	29463041	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_29463677_29464916
ENSMUSG00000032679.13_103926146_103944608_1	chr2	+	600	4	FSM	ENSMUSG00000032679.13	ENSMUST00000040423.12	1691	4	0	1091	0	0	multi-exon	FALSE	canonical	3	158	junction_1	38.5082963644055	839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCATCTGTATTAATTTAG	NA	False	NA	-48	True	NA	NA	NA	103926145	103944608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_103926273_103934515_103934595_103941084_103941190_103944319
ENSMUSG00000032679.13_103926185_103944425_1	chr2	+	378	4	FSM	ENSMUSG00000032679.13	ENSMUST00000040423.12	1691	4	39	1274	0	-183	multi-exon	FALSE	canonical	3	158	junction_1	38.5082963644055	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTGTAACAAAAGTGACG	NA	False	NA	NA	False	ATTAAA	-22	NA	103926184	103944425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_103926273_103934515_103934595_103941084_103941190_103944319
ENSMUSG00000032679.13_103926185_103944425_2	chr2	+	563	6	NNC	ENSMUSG00000032679.13	novel	681	5	NA	NA	0	-183	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	100.476066802	67	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTGTAACAAAAGTGACG	NA	False	NA	NA	False	ATTAAA	-22	NA	103926184	103944425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_103926273_103928069_103928190_103928356_103928422_103934515_103934595_103941084_103941190_103944319
ENSMUSG00000032679.13_103926185_103944425_3	chr2	+	498	5	FSM	ENSMUSG00000032679.13	ENSMUST00000153312.2	681	5	0	183	0	-183	multi-exon	FALSE	canonical	3	25	junction_1	94.0063162771524	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTGTAACAAAAGTGACG	NA	False	NA	NA	False	ATTAAA	-22	NA	103926184	103944425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_103926273_103928069_103928190_103934515_103934595_103941084_103941190_103944319
ENSMUSG00000032679.13_103926185_103944659_1	chr2	+	612	4	FSM	ENSMUSG00000032679.13	ENSMUST00000040423.12	1691	4	39	1040	0	51	multi-exon	FALSE	canonical	3	158	junction_1	38.5082963644055	1121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAGGGAGGAGTTTAAGC	NA	False	NA	3	True	AATAAA	-21	NA	103926184	103944659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_103926273_103934515_103934595_103941084_103941190_103944319
ENSMUSG00000032679.13_103926185_103955031_1	chr2	+	470	4	Fusion	ENSMUSG00000032679.13_ENSMUSG00000032671.6	novel	681	5	NA	NA	0	-63	multi-exon	FALSE	canonical	1	3	junction_3	79.3319327607462	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACTACTGTTATCATTGC	NA	False	NA	NA	False	NA	NA	NA	103926184	103955031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_+_103926273_103934515_103934595_103941084_103941190_103954833
ENSMUSG00000032679.13_103927276_103944425_1	chr2	+	516	5	NNC	ENSMUSG00000032679.13	novel	1806	5	NA	NA	1091	-183	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	96.7196334773866	86	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTGTAACAAAAGTGACG	NA	False	NA	NA	False	ATTAAA	-22	NA	103927275	103944425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_103927382_103928069_103928190_103934515_103934595_103941084_103941190_103944319
ENSMUSG00000032679.13_103927276_103944425_3	chr2	+	577	5	NNC	ENSMUSG00000032679.13	novel	1806	5	NA	NA	1091	-183	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	98.119824704287	101	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTGTAACAAAAGTGACG	NA	False	NA	NA	False	ATTAAA	-22	NA	103927275	103944425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_103927443_103928069_103928190_103934515_103934595_103941084_103941190_103944319
ENSMUSG00000032679.13_103927276_103944659_1	chr2	+	630	4	NNC	ENSMUSG00000032679.13	novel	1806	5	NA	NA	1091	51	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	102.022873252358	248	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAGGGAGGAGTTTAAGC	NA	False	NA	3	True	AATAAA	-21	NA	103927275	103944659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_103927382_103934515_103934595_103941084_103941190_103944319
ENSMUSG00000032705.10_80509994_80544896_1	chr12	+	3185	9	FSM	ENSMUSG00000032705.10	ENSMUST00000038185.10	3310	9	125	0	0	0	multi-exon	FALSE	canonical	3	165	junction_6	24.0724816959116	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGTGATTGTAAATGTG	2788	False	NA	22	True	AATAAA	-19	NA	80509993	80544896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_80510055_80522496_80522963_80527228_80527486_80531019_80531147_80536175_80536508_80537554_80537662_80537868_80538005_80539315_80539673_80543554
ENSMUSG00000032705.10_80539552_80544896_1	chr12	+	1463	2	FSM	ENSMUSG00000032705.10	ENSMUST00000219757.2	5245	2	1677	2105	1677	0	multi-exon	FALSE	canonical	3	232	junction_1	0	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGTGATTGTAAATGTG	NA	False	NA	22	True	AATAAA	-19	NA	80539551	80544896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_80539673_80543554
ENSMUSG00000032715.10_152179342_152185980_1	chr2	-	1865	4	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	437.996448488899	605	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGGTGACTTTCTCT	NA	False	NA	-4	True	AATAAA	-29	NA	152185980	152179341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_152180608_152181634_152181928_152185145_152185248_152185776
ENSMUSG00000032745.19_111562214_111626378_1	chr13	-	3367	12	FSM	ENSMUSG00000032745.19	ENSMUST00000091236.11	3299	12	184	-252	184	0	multi-exon	FALSE	canonical	3	389	junction_6	235.263031976713	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTTGTTCTTTGTAGTG	NA	False	NA	-4	True	AATAAA	-15	NA	111626378	111562213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
ENSMUSG00000032745.19_111562692_111574545_1	chr13	-	840	4	ISM	ENSMUSG00000032745.19	ENSMUST00000136471.9	1940	11	49701	0	15371	0	3prime_fragment	FALSE	canonical	3	1188	junction_2	41.1528316833187	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCTGTCTTAAAATGTTC	NA	False	NA	-2	True	AATAAA	-23	NA	111574545	111562691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490
ENSMUSG00000032745.19_111562692_111626378_1	chr13	-	2889	12	FSM	ENSMUSG00000032745.19	ENSMUST00000091236.11	3299	12	184	226	184	0	multi-exon	FALSE	canonical	3	389	junction_6	235.263031976713	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCTGTCTTAAAATGTTC	NA	False	NA	-2	True	AATAAA	-23	NA	111626378	111562691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
ENSMUSG00000032745.19_111623130_111626378_1	chr13	-	1902	2	ISM	ENSMUSG00000032745.19	ENSMUST00000091236.11	3299	12	184	60664	184	-45854	5prime_fragment	FALSE	canonical	3	1177	junction_1	0	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGTTTTTGAAACAT	NA	False	NA	NA	False	NA	NA	NA	111626378	111623129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_111624905_111626251
ENSMUSG00000032754.15_120649233_120672089_1	chr5	+	2565	13	NIC	ENSMUSG00000032754.15	novel	2898	16	NA	NA	0	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_5	57.0079794609686	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGAGTCCCACAGGGT	-4	True	NA	6	True	AATAAA	-22	NA	120649232	120672089	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
ENSMUSG00000032757.7_4077873_4086939_1	chr6	-	509	4	FSM	ENSMUSG00000032757.7	ENSMUST00000049166.5	1516	4	33	974	-9	0	multi-exon	FALSE	canonical	3	308	junction_1	40.3016404408335	1794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGGGCTTTGAATTTGT	-2	True	NA	-9	True	ATTAAA	-18	NA	4086939	4077872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_4078037_4079960_4080018_4082457_4082583_4086776
ENSMUSG00000032763.12_78410334_78420336_1	chr10	+	2232	16	NIC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	41.9345521815444	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5399	False	NA	30	True	AATAAA	-39	NA	78410333	78420336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_78410403_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
ENSMUSG00000032783.10_98972868_98973959_1	chr15	+	983	2	ISM	ENSMUSG00000032783.10	ENSMUST00000230311.2	819	3	-43	1369	0	12	5prime_fragment	FALSE	canonical	3	90	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATCTTCTGGGCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	98972867	98973959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_98973380_98973488
ENSMUSG00000032783.10_98972868_98981290_1	chr15	+	2227	14	FSM	ENSMUSG00000032783.10	ENSMUST00000230054.2	2639	14	412	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	17.6655315775427	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCAGCCAGTGCTGTTG	NA	False	NA	14	True	AATAAA	-23	NA	98972867	98981290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_98972949_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980587_98980789_98980984_98981108
ENSMUSG00000032788.16_78276433_78300809_1	chr10	-	1269	11	FSM	ENSMUSG00000032788.16	ENSMUST00000041616.15	5124	11	0	3855	0	-3855	multi-exon	TRUE	canonical	3	285	junction_4	40.3910881259715	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGATTCACAACCATGG	6802	False	NA	3	True	TTTAAA	-24	NA	78300809	78276432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_78276748_78276970_78277038_78279614_78279752_78280816_78280929_78282783_78282830_78283728_78283815_78285063_78285111_78286116_78286201_78287312_78287418_78289307_78289363_78300594
ENSMUSG00000032802.9_151947650_151951715_1	chr2	+	1025	2	FSM	ENSMUSG00000032802.9	ENSMUST00000041500.8	2812	2	206	1581	206	473	multi-exon	FALSE	canonical	3	134	junction_1	0	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGACCCTGTTCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	151947649	151951715	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_151947868_151950908
ENSMUSG00000032802.9_151947650_151952507_1	chr2	+	1817	2	FSM	ENSMUSG00000032802.9	ENSMUST00000041500.8	2812	2	206	789	206	-789	multi-exon	FALSE	canonical	3	134	junction_1	0	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCCAGGTACATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	151947649	151952507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_151947868_151950908
ENSMUSG00000032802.9_151947650_151953296_1	chr2	+	2606	2	FSM	ENSMUSG00000032802.9	ENSMUST00000041500.8	2812	2	206	0	206	0	multi-exon	FALSE	canonical	3	134	junction_1	0	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAACAGTTTTGGTTGTG	NA	False	NA	31	True	NA	NA	NA	151947649	151953296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_151947868_151950908
ENSMUSG00000032803.16_103241185_103242481_1	chr9	-	235	3	NNC	ENSMUSG00000032803.16	novel	3387	5	NA	NA	-155	-2382	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	239	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCAAATAAGGTAGGATGT	NA	False	NA	NA	False	NA	NA	NA	103242481	103241184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_103241251_103242252_103242302_103242361
ENSMUSG00000032807.6_69058234_69060618_1	chr11	+	589	4	ISM	ENSMUSG00000032807.6	ENSMUST00000036424.3	2431	15	10419	0	10419	0	3prime_fragment	FALSE	canonical	3	17	junction_3	8.17856276425687	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGGTCTGAGAACGTGGGG	NA	False	NA	7	True	AATAAA	-18	NA	69058233	69060618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_69058304_69059603_69059705_69060043_69060215_69060371
ENSMUSG00000032812.19_101043575_101061101_1	chr7	+	3001	21	FSM	ENSMUSG00000032812.19	ENSMUST00000098243.4	3693	21	0	692	0	0	multi-exon	FALSE	canonical	3	23	junction_1	25.1838738084513	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCTGAGGCCTGTGATG	NA	False	NA	18	True	TATAAA	-23	NA	101043574	101061101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_101043675_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
ENSMUSG00000032834.12_78007429_78020983_1	chr10	-	3186	21	FSM	ENSMUSG00000032834.12	ENSMUST00000042556.11	3872	21	0	686	0	-686	multi-exon	FALSE	canonical	3	184	junction_16	14.9260678009984	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGAGTTTCCGGTGTTTC	NA	False	NA	-21	True	NA	NA	NA	78020983	78007428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014411_78014794_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78019891_78020005_78020904
ENSMUSG00000032840.8_118383292_118399583_1	chr5	+	1074	5	FSM	ENSMUSG00000032840.8	ENSMUST00000049138.8	5649	5	0	4575	0	-4575	multi-exon	FALSE	canonical	3	164	junction_3	13.6633634219397	314	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTTGCTCTCATTTCCTGA	1639	False	NA	5	True	AATACA	-14	NA	118383291	118399583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_118383524_118393734_118393892_118397040_118397193_118397439_118397554_118399164
ENSMUSG00000032869.16_151560185_151583085_1	chr2	-	1211	7	FSM	ENSMUSG00000032869.16	ENSMUST00000042452.11	3809	7	145	2453	128	0	multi-exon	FALSE	canonical	3	320	junction_3	11.5385826204473	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTCCACGCTCCTTTTT	NA	False	NA	-28	True	AATACA	-15	NA	151583085	151560184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_151560606_151561404_151561564_151562742_151562797_151571410_151571597_151576141_151576225_151577393_151577547_151582930
ENSMUSG00000032869.16_151560185_151583213_1	chr2	-	1339	7	FSM	ENSMUSG00000032869.16	ENSMUST00000042452.11	3809	7	17	2453	0	0	multi-exon	FALSE	canonical	3	320	junction_3	11.5385826204473	950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTCCACGCTCCTTTTT	NA	False	NA	-28	True	AATACA	-15	NA	151583213	151560184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_151560606_151561404_151561564_151562742_151562797_151571410_151571597_151576141_151576225_151577393_151577547_151582930
ENSMUSG00000032869.16_151560185_151583213_2	chr2	-	1333	7	NNC	ENSMUSG00000032869.16	novel	1384	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	126.566736897531	862	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTCCACGCTCCTTTTT	NA	False	NA	-28	True	AATACA	-15	NA	151583213	151560184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_151560606_151561404_151561564_151562742_151562797_151571410_151571597_151576141_151576225_151577399_151577547_151582930
ENSMUSG00000032869.16_151560185_151583213_3	chr2	-	1220	8	NNC	ENSMUSG00000032869.16	novel	1384	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	118.814896338114	162	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTCCACGCTCCTTTTT	NA	False	NA	-28	True	AATACA	-15	NA	151583213	151560184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_151560606_151561404_151561564_151562742_151562797_151571410_151571597_151576141_151576225_151577393_151577547_151582930_151583075_151583193
ENSMUSG00000032872.17_86904067_86959061_1	chr9	+	1878	16	FSM	ENSMUSG00000032872.17	ENSMUST00000168529.9	2644	16	0	766	0	-373	multi-exon	FALSE	canonical	3	203	junction_12	173.734612428139	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTTCTTGGTTTAATTT	NA	False	NA	12	True	AATGAA	-21	NA	86904066	86959061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948701_86948867_86958880
ENSMUSG00000032872.17_86904067_86959325_1	chr9	+	2142	16	FSM	ENSMUSG00000032872.17	ENSMUST00000168529.9	2644	16	0	502	0	-109	multi-exon	FALSE	canonical	3	203	junction_12	173.734612428139	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGGTGTATGTCCTTAG	NA	False	NA	-98	True	ATTAAA	-28	NA	86904066	86959325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948701_86948867_86958880
ENSMUSG00000032872.17_86904067_86959325_2	chr9	+	2133	15	NNC	ENSMUSG00000032872.17	novel	2644	16	NA	NA	0	-109	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	233.27500850249	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGGTGTATGTCCTTAG	NA	False	NA	-98	True	ATTAAA	-28	NA	86904066	86959325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914533_86922431_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948701_86948867_86958880
ENSMUSG00000032872.17_86904067_86959434_1	chr9	+	2251	16	FSM	ENSMUSG00000032872.17	ENSMUST00000168529.9	2644	16	0	393	0	0	multi-exon	FALSE	canonical	3	203	junction_12	173.734612428139	801	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTGTGGTGGACGTGTG	NA	False	NA	11	True	AATAAA	-22	NA	86904066	86959434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948701_86948867_86958880
ENSMUSG00000032872.17_86904067_86959434_2	chr9	+	2242	15	NNC	ENSMUSG00000032872.17	novel	2644	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	233.27500850249	718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTGTGGTGGACGTGTG	NA	False	NA	11	True	AATAAA	-22	NA	86904066	86959434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914533_86922431_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948701_86948867_86958880
ENSMUSG00000032892.15_68863310_68864669_1	chr11	-	987	4	NIC	ENSMUSG00000032892.15	novel	820	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	482	junction_2	50.8876758710354	1939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCCTTCAAATCTA	7236	False	NA	-2	True	AATAAA	-22	NA	68864669	68863309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_68863568_68863768_68863855_68863942_68864384_68864467
ENSMUSG00000032892.15_68863310_68864669_2	chr11	-	799	5	NIC	ENSMUSG00000032892.15	novel	820	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	253.801472611961	6379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCCTTCAAATCTA	7236	False	NA	-2	True	AATAAA	-22	NA	68864669	68863309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_68863568_68863768_68863855_68863963_68864100_68864266_68864384_68864467
ENSMUSG00000032897.18_120614635_120682904_1	chr4	-	1747	8	NIC	ENSMUSG00000032897.18	novel	1932	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_6	146.72367475869	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	-1	True	AATAAA	-20	NA	120682904	120614634	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120647573_120647687_120682726
ENSMUSG00000032898.10_118138451_118146756_1	chr5	+	983	3	ISM	ENSMUSG00000032898.10	ENSMUST00000201611.2	1878	11	23415	-129	21062	129	3prime_fragment	FALSE	canonical	3	438	junction_1	4.5	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTTTTTTTGTTGTTGT	NA	False	NA	28	True	AATACA	-20	NA	118138450	118146756	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_118138594_118140079_118140238_118146074
ENSMUSG00000032905.6_46865493_46874624_1	chr18	-	2461	4	FSM	ENSMUSG00000032905.6	ENSMUST00000035648.6	4765	4	22	2282	0	-2282	multi-exon	FALSE	canonical	3	312	junction_1	11.8977121983832	1171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACCAGAATAACTTATTG	NA	False	NA	-11	True	AATAAA	-18	NA	46874624	46865492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_46867577_46868321_46868385_46870461_46870599_46874447
ENSMUSG00000032905.6_46867329_46874624_1	chr18	-	625	4	FSM	ENSMUSG00000032905.6	ENSMUST00000035648.6	4765	4	22	4118	0	1285	multi-exon	FALSE	canonical	3	312	junction_1	11.8977121983832	872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGACGTTAGAGTGTGCC	NA	False	NA	NA	False	CATAAA	-13	NA	46874624	46867328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_46867577_46868321_46868385_46870461_46870599_46874447
ENSMUSG00000032946.17_6449904_6453668_1	chr19	+	607	5	FSM	ENSMUSG00000032946.17	ENSMUST00000150713.8	453	5	6	-160	0	0	multi-exon	TRUE	canonical	0	0	junction_3	119.445332684036	1637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6449903	6453668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6449995_6451750_6451894_6452501_6452605_6453053_6453117_6453461
ENSMUSG00000032946.17_6451732_6453668_1	chr19	+	533	4	NNC	ENSMUSG00000032946.17	novel	535	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	116.70761186258	1159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6451731	6453668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_6451894_6452501_6452610_6453060_6453117_6453461
ENSMUSG00000032946.17_6451732_6453668_2	chr19	+	534	4	NNC	ENSMUSG00000032946.17	novel	535	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	116.70761186258	1222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6451731	6453668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_6451894_6452501_6452611_6453060_6453117_6453461
ENSMUSG00000032946.17_6451732_6453668_3	chr19	+	425	3	ISM	ENSMUSG00000032946.17	ENSMUST00000113467.2	409	4	1079	-26	0	0	3prime_fragment	FALSE	canonical	3	21	junction_1	111.5	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6451731	6453668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_6451894_6453060_6453117_6453461
ENSMUSG00000032946.17_6463113_6465243_1	chr19	+	641	5	ISM	ENSMUSG00000032946.17	ENSMUST00000149205.2	919	7	4678	-2	4678	2	3prime_fragment	FALSE	canonical	3	149	junction_1	9.57535900110278	1410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCAGCCTAAAACCCTCT	NA	False	NA	22	True	AATAAA	-24	NA	6463112	6465243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
ENSMUSG00000032946.17_6463170_6465243_1	chr19	+	785	4	NIC	ENSMUSG00000032946.17	novel	919	7	NA	NA	4735	2	intron_retention	FALSE	canonical	3	164	junction_1	5.65685424949238	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCAGCCTAAAACCCTCT	NA	False	NA	22	True	AATAAA	-24	NA	6463169	6465243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_6463495_6463894_6464072_6464821_6464885_6465023
ENSMUSG00000032952.12_103716916_103729341_1	chr3	+	2747	11	NNC	ENSMUSG00000032952.12	novel	2799	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	22.1099525101254	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGCCTGTCGTCACTT	NA	False	NA	17	True	ATTAAA	-21	NA	103716915	103729341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_103717104_103717183_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
ENSMUSG00000032965.12_49519596_49584298_1	chr16	+	1410	11	FSM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	0	1191	0	-181	multi-exon	FALSE	canonical	3	141	junction_7	10.0915806492343	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTGATTATTTCGTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	49519595	49584298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_49519913_49522216_49522380_49523512_49523632_49526453_49526545_49532201_49532271_49557034_49557158_49578757_49578830_49579679_49579812_49581316_49581380_49582963_49583031_49584104
ENSMUSG00000032965.12_49519596_49584480_1	chr16	+	1429	10	NIC	ENSMUSG00000032965.12	novel	2601	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	50.3957180230794	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTCAGAGAAGTGTTC	NA	False	NA	18	True	AATAAA	-14	NA	49519595	49584480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_49519913_49523512_49523632_49526453_49526545_49532201_49532271_49557034_49557158_49578757_49578830_49579679_49579812_49581316_49581380_49582963_49583031_49584104
ENSMUSG00000032965.12_49519596_49584480_2	chr16	+	1592	11	FSM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	0	1009	0	0	multi-exon	FALSE	canonical	3	141	junction_7	10.0915806492343	537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTCAGAGAAGTGTTC	NA	False	NA	18	True	AATAAA	-14	NA	49519595	49584480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_49519913_49522216_49522380_49523512_49523632_49526453_49526545_49532201_49532271_49557034_49557158_49578757_49578830_49579679_49579812_49581316_49581380_49582963_49583031_49584104
ENSMUSG00000032965.12_49519718_49584480_2	chr16	+	1470	11	FSM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	122	1009	0	0	multi-exon	FALSE	canonical	3	141	junction_7	10.0915806492343	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTCAGAGAAGTGTTC	NA	False	NA	18	True	AATAAA	-14	NA	49519717	49584480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_49519913_49522216_49522380_49523512_49523632_49526453_49526545_49532201_49532271_49557034_49557158_49578757_49578830_49579679_49579812_49581316_49581380_49582963_49583031_49584104
ENSMUSG00000032966.15_151384505_151402748_1	chr2	+	692	5	FSM	ENSMUSG00000032966.15	ENSMUST00000044011.12	1658	5	102	864	0	0	multi-exon	FALSE	canonical	3	2063	junction_1	209.807501057517	2250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGGGTGAAGACTCAGT	NA	False	NA	9	True	CATAAA	-16	NA	151384504	151402748	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_151384665_151384737_151384786_151399305_151399419_151401377_151401541_151402540
ENSMUSG00000032966.15_151384505_151402748_2	chr2	+	687	5	NNC	ENSMUSG00000032966.15	novel	783	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	999.808606684299	1849	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGGGTGAAGACTCAGT	NA	False	NA	9	True	CATAAA	-16	NA	151384504	151402748	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_151384665_151384737_151384786_151399305_151399419_151401382_151401541_151402540
ENSMUSG00000032966.15_151384505_151402748_3	chr2	+	683	5	NNC	ENSMUSG00000032966.15	novel	783	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	999.808606684299	1980	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGGGTGAAGACTCAGT	NA	False	NA	9	True	CATAAA	-16	NA	151384504	151402748	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_151384665_151384737_151384786_151399305_151399410_151401377_151401541_151402540
ENSMUSG00000032977.10_77323999_77351619_2	chr10	-	890	6	FSM	ENSMUSG00000032977.10	ENSMUST00000045454.9	2394	6	0	1504	0	0	multi-exon	FALSE	canonical	3	238	junction_3	11.7881296226331	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATCTGTGGCTTTACTTC	NA	False	NA	-3	True	AATAAA	-35	NA	77351619	77323998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_77324308_77325831_77325901_77333196_77333348_77339679_77339749_77350139_77350249_77351436
ENSMUSG00000032977.10_77323999_77351619_3	chr10	-	885	6	NNC	ENSMUSG00000032977.10	novel	2394	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	99.35512065314	561	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATCTGTGGCTTTACTTC	NA	False	NA	-3	True	AATAAA	-35	NA	77351619	77323998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_77324303_77325831_77325901_77333196_77333348_77339679_77339749_77350139_77350249_77351436
ENSMUSG00000033004.17_103350847_103352832_1	chr14	-	1066	2	FSM	ENSMUSG00000033004.17	ENSMUST00000162852.2	344	2	0	-722	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTGTAAAGTATTTTT	NA	False	NA	NA	False	AATAAA	-36	NA	103352832	103350846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_103351672_103352591
ENSMUSG00000033020.8_79025551_79035967_1	chr15	+	717	4	ISM	ENSMUSG00000033020.8	ENSMUST00000229973.2	414	5	-15	-173	0	3	intron_retention	FALSE	canonical	3	2040	junction_3	39.0640499692492	9681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCTCTCCCCGTTACCTG	NA	False	NA	21	True	AATAAA	-15	NA	79025550	79035967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_79025635_79028793_79028864_79030252_79030384_79035535
ENSMUSG00000033020.8_79025551_79035967_2	chr15	+	536	5	FSM	ENSMUSG00000033020.8	ENSMUST00000230271.2	885	5	342	7	0	3	multi-exon	FALSE	canonical	3	2023	junction_4	39.9335385359224	21797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCTCTCCCCGTTACCTG	NA	False	NA	21	True	AATAAA	-15	NA	79025550	79035967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_79025635_79028793_79028864_79030252_79030384_79035535_79035608_79035788
ENSMUSG00000033021.17_75412612_75419818_1	chr1	+	1541	13	NNC	ENSMUSG00000033021.17	novel	1539	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	78.2403703694937	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGCTTGGACTCCTACT	NA	False	NA	13	True	AATAAA	-17	NA	75412611	75419818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_75412656_75413381_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ENSMUSG00000033021.17_75412612_75419818_2	chr1	+	1802	13	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	82	junction_1	58.385869199852	605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGCTTGGACTCCTACT	NA	False	NA	13	True	AATAAA	-17	NA	75412611	75419818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ENSMUSG00000033021.17_75412612_75419818_3	chr1	+	1683	13	NIC	ENSMUSG00000033021.17	novel	1539	13	NA	NA	0	0	intron_retention	FALSE	canonical	2	5	junction_1	78.2403703694937	551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGCTTGGACTCCTACT	NA	False	NA	13	True	AATAAA	-17	NA	75412611	75419818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_75412838_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ENSMUSG00000033021.17_75412612_75419818_4	chr1	+	1796	13	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	14	junction_1	75.8797934601535	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGCTTGGACTCCTACT	NA	False	NA	13	True	AATAAA	-17	NA	75412611	75419818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_75412957_75413427_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ENSMUSG00000033022.9_46846271_46861096_1	chr18	-	1218	5	FSM	ENSMUSG00000033022.9	ENSMUST00000035804.9	1595	5	366	11	0	0	multi-exon	FALSE	canonical	3	151	junction_1	18.3166590840142	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACATTGCCTTTTTGATG	2943	False	NA	-3	True	AATAAA	-19	NA	46861096	46846270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_46847029_46848663_46848834_46853353_46853509_46856384_46856463_46861039
ENSMUSG00000033022.9_46846574_46861422_1	chr18	-	1241	5	FSM	ENSMUSG00000033022.9	ENSMUST00000035804.9	1595	5	40	314	0	-303	multi-exon	FALSE	canonical	3	151	junction_1	18.3166590840142	1102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATCACGTGTCTGTTTTCA	2617	False	NA	-3	True	AGTAAA	-17	NA	46861422	46846573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_46847029_46848663_46848834_46853353_46853509_46856384_46856463_46861039
ENSMUSG00000033031.14_48814551_48839047_1	chr16	+	2953	21	FSM	ENSMUSG00000033031.14	ENSMUST00000048374.6	3974	21	0	1021	0	-967	multi-exon	FALSE	canonical	2	173	junction_10	25.4173169315725	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGTTTTATTTATTCTT	NA	False	NA	2	True	AGTAAA	-14	NA	48814550	48839047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_48814743_48817733_48817882_48819317_48819431_48820623_48820719_48821353_48821451_48821928_48822052_48822154_48822301_48824289_48824366_48824631_48824848_48826050_48826211_48827412_48827555_48829440_48829541_48831071_48831191_48833537_48833734_48834159_48834235_48834327_48834439_48835255_48835453_48836306_48836421_48836641_48836725_48837714_48837855_48838737
ENSMUSG00000033031.14_48814551_48839614_1	chr16	+	3520	21	FSM	ENSMUSG00000033031.14	ENSMUST00000048374.6	3974	21	0	454	0	-400	multi-exon	FALSE	canonical	2	173	junction_10	25.4173169315725	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTTTTGTTCTTTGCTT	NA	False	NA	20	True	ATTAAA	-21	NA	48814550	48839614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_48814743_48817733_48817882_48819317_48819431_48820623_48820719_48821353_48821451_48821928_48822052_48822154_48822301_48824289_48824366_48824631_48824848_48826050_48826211_48827412_48827555_48829440_48829541_48831071_48831191_48833537_48833734_48834159_48834235_48834327_48834439_48835255_48835453_48836306_48836421_48836641_48836725_48837714_48837855_48838737
ENSMUSG00000033032.16_61863332_61870438_1	chr18	-	1708	5	NNC	ENSMUSG00000033032.16	novel	2842	16	NA	NA	49244	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	5.2618912949623	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCAGAGGGTAGCTGGC	NA	False	NA	1	True	AATAAA	-21	NA	61870438	61863331	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_61864382_61866774_61866904_61868638_61868818_61869853_61870019_61870253
ENSMUSG00000033075.18_97984749_97991450_1	chr15	-	553	2	ISM	ENSMUSG00000033075.18	ENSMUST00000181349.2	2830	9	-199	23764	0	1689	5prime_fragment	FALSE	canonical	3	84	junction_1	0	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGAATGCCTATTGGCAGAA	6143	False	NA	NA	False	AAAAAG	-7	NA	97991450	97984748	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_97985015_97991163
ENSMUSG00000033099.11_78819133_78825064_1	chr15	+	947	6	FSM	ENSMUSG00000033099.11	ENSMUST00000138880.9	3721	6	0	2774	0	0	multi-exon	FALSE	canonical	3	420	junction_1	39.9929993873928	2677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTCTGTGCTTGTGCT	NA	False	NA	10	True	NA	NA	NA	78819132	78825064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_78819276_78820678_78820785_78821333_78821383_78822007_78822151_78824265_78824367_78824659
ENSMUSG00000033099.11_78819386_78825064_1	chr15	+	1313	6	NIC	ENSMUSG00000033099.11	novel	681	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	182.547528057764	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTCTGTGCTTGTGCT	NA	False	NA	10	True	NA	NA	NA	78819385	78825064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_78819895_78820678_78820785_78821333_78821383_78822007_78822151_78824265_78824367_78824659
ENSMUSG00000033106.7_106927070_106937567_1	chr8	-	1527	5	FSM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	-2	-279	0	279	multi-exon	FALSE	canonical	3	127	junction_1	2.91547594742265	1689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCAGTTCTTTTTTAGA	NA	False	NA	-2	True	AATAAA	-22	NA	106937567	106927069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_106927782_106928862_106928984_106930962_106931173_106936996_106937264_106937350
ENSMUSG00000033106.7_106927070_106937567_2	chr8	-	1622	4	NNC	ENSMUSG00000033106.7	novel	1246	5	NA	NA	0	279	intron_retention	FALSE	canonical	3	16	junction_2	53.0471488394994	1183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCAGTTCTTTTTTAGA	NA	False	NA	-2	True	AATAAA	-22	NA	106937567	106927069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_106927782_106928862_106928992_106930962_106931173_106936996
ENSMUSG00000033106.7_106927070_106937567_3	chr8	-	1535	5	NNC	ENSMUSG00000033106.7	novel	1246	5	NA	NA	0	279	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	49.2512690191837	1672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCAGTTCTTTTTTAGA	NA	False	NA	-2	True	AATAAA	-22	NA	106937567	106927069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_106927782_106928862_106928992_106930962_106931173_106936996_106937264_106937350
ENSMUSG00000033107.7_21077682_21116653_1	chr18	+	1082	6	FSM	ENSMUSG00000033107.7	ENSMUST00000050004.3	1348	6	0	266	0	-128	multi-exon	FALSE	canonical	3	69	junction_1	22.5335305711289	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAATTCTCATGCTCTAA	5341	False	NA	NA	False	ATTAAA	-17	NA	21077681	21116653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_21077815_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
ENSMUSG00000033107.7_21077682_21117081_1	chr18	+	1510	6	FSM	ENSMUSG00000033107.7	ENSMUST00000050004.3	1348	6	0	-162	0	162	multi-exon	FALSE	canonical	3	69	junction_1	22.5335305711289	867	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTTGATAGAAGAT	5341	False	NA	NA	False	NA	NA	NA	21077681	21117081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_21077815_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
ENSMUSG00000033107.7_21077682_21173464_1	chr18	+	1509	7	NNC	ENSMUSG00000033107.7	novel	1348	6	NA	NA	0	56545	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	45.7993813640898	859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCATCCAAATGTGGCTG	5341	False	NA	NA	False	NA	NA	NA	21077681	21173464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_21077815_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155_21117018_21173401
ENSMUSG00000033107.7_21094750_21117081_1	chr18	+	1485	6	FSM	ENSMUSG00000033107.7	ENSMUST00000234316.2	1406	6	221	-300	221	162	multi-exon	FALSE	canonical	3	78	junction_1	19.3349424617711	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTTGATAGAAGAT	1440	False	NA	NA	False	NA	NA	NA	21094749	21117081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_21094858_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
ENSMUSG00000033107.7_21094807_21116653_1	chr18	+	1000	6	FSM	ENSMUSG00000033107.7	ENSMUST00000234316.2	1406	6	278	128	278	-128	multi-exon	FALSE	canonical	3	78	junction_1	19.3349424617711	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAATTCTCATGCTCTAA	1497	False	NA	NA	False	ATTAAA	-17	NA	21094806	21116653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_21094858_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
ENSMUSG00000033107.7_21094932_21117075_1	chr18	+	1441	6	NNC	ENSMUSG00000033107.7	novel	1348	6	NA	NA	403	156	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	47.3767875652202	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTTTGATA	1622	False	NA	NA	False	NA	NA	NA	21094931	21117075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_21095002_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
ENSMUSG00000033111.17_10167784_10185509_1	chr14	-	1116	5	FSM	ENSMUSG00000033111.17	ENSMUST00000223762.2	2292	5	32	1144	0	0	multi-exon	FALSE	canonical	3	15	junction_4	58.5683361552981	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGGCCCTCTTGAGTCTC	NA	False	NA	-8	True	AATAAA	-18	NA	10185509	10167783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184376_10185505
ENSMUSG00000033111.17_10167784_10185509_2	chr14	-	960	7	NIC	ENSMUSG00000033111.17	novel	900	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	65.3029265976818	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGGCCCTCTTGAGTCTC	NA	False	NA	-8	True	AATAAA	-18	NA	10185509	10167783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_10168192_10168274_10168365_10168516_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185429
ENSMUSG00000033111.17_10168415_10185509_3	chr14	-	485	5	FSM	ENSMUSG00000033111.17	ENSMUST00000223762.2	2292	5	32	1775	0	0	multi-exon	FALSE	canonical	3	15	junction_4	58.5683361552981	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAGTTTCATTTTGTTA	NA	False	NA	NA	False	TATAAA	-30	NA	10185509	10168414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184376_10185505
ENSMUSG00000033114.12_64244955_64277144_1	chr13	-	1256	9	NIC	ENSMUSG00000033114.12	novel	1542	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_8	35.5773804544404	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAGTGTGATATTACAGT	NA	False	NA	NA	False	AATAAA	-19	NA	64277144	64244954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64276999
ENSMUSG00000033124.17_75168836_75172182_1	chr1	-	1172	4	NIC	ENSMUSG00000033124.17	novel	4041	16	NA	NA	-3342	-2075	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAACAATTCGGCGGCTAC	8196	False	NA	NA	False	NA	NA	NA	75172182	75168835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_75169322_75170821_75170929_75171484_75171588_75171706
ENSMUSG00000033126.6_76303946_76304697_1	chr10	-	365	2	ISM	ENSMUSG00000033126.6	ENSMUST00000049185.6	4522	5	251	8545	0	-747	5prime_fragment	FALSE	canonical	3	38	junction_1	0	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTTCTTCTCGTACAG	NA	False	NA	NA	False	NA	NA	NA	76304697	76303945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_76304221_76304607
ENSMUSG00000033128.10_78761751_78770284_1	chr15	+	773	7	ISM	ENSMUSG00000033128.10	ENSMUST00000230192.2	2665	17	0	8497	0	1875	5prime_fragment	FALSE	canonical	3	379	junction_6	69.8866145187252	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGAGGCTGATATTTAGA	NA	False	NA	NA	False	AGTAAA	-14	NA	78761750	78770284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_78761818_78765237_78765323_78766327_78766404_78767467_78767567_78768284_78768409_78769455_78769557_78770063
ENSMUSG00000033157.18_45550088_45563264_1	chr16	-	1081	6	NNC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	119.092233164048	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGGTGAGTCCTGTGC	NA	False	NA	-5	True	NA	NA	NA	45563264	45550087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_45550357_45552069_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
ENSMUSG00000033157.18_45551512_45563264_1	chr16	-	1370	5	FSM	ENSMUSG00000033157.18	ENSMUST00000066983.13	2848	5	54	1424	1	402	multi-exon	FALSE	canonical	3	291	junction_3	18.7932833746528	1400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTGCCATGCTATATTTAA	NA	False	NA	NA	False	AATAAA	-14	NA	45563264	45551511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
ENSMUSG00000033157.18_45551737_45563264_1	chr16	-	1145	5	FSM	ENSMUSG00000033157.18	ENSMUST00000066983.13	2848	5	54	1649	1	177	multi-exon	FALSE	canonical	3	291	junction_3	18.7932833746528	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGTTTGCCTTTCTTAC	NA	False	NA	-29	True	ATTAAA	-23	NA	45563264	45551736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
ENSMUSG00000033166.12_99314706_99335139_1	chr14	-	2528	19	ISM	ENSMUSG00000033166.12	ENSMUST00000042471.11	5150	21	2067	2064	1227	0	3prime_fragment	FALSE	canonical	3	393	junction_13	28.27946949753	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTATTGAGTTGCTGA	4594	False	NA	-11	True	AATACA	-24	NA	99335139	99314705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_99314902_99315697_99315821_99316563_99316723_99316823_99316993_99317100_99317316_99318661_99318819_99320085_99320173_99321462_99321591_99323309_99323395_99323482_99323548_99324824_99324927_99325169_99325287_99326197_99326345_99327053_99327192_99327400_99327515_99328763_99328929_99332608_99332777_99334192_99334267_99335020
ENSMUSG00000033174.18_88701452_88802815_1	chr6	+	1091	8	FSM	ENSMUSG00000033174.18	ENSMUST00000113585.9	3676	8	58	2527	0	0	multi-exon	FALSE	canonical	2	10	junction_6	2.55550625999976	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCTGGCTGGCTCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88701451	88802815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_88701554_88702682_88702828_88741577_88741685_88784992_88785130_88786317_88786429_88795555_88795646_88800172_88800389_88802632
ENSMUSG00000033186.10_99271636_99283556_1	chr14	-	2495	4	NNC	ENSMUSG00000033186.10	novel	2240	3	NA	NA	0	344	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	385.421270242777	1677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGGAGAGTCATAAAATTT	NA	False	NA	NA	False	GATAAA	-43	NA	99283556	99271635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_99271702_99271790_99273947_99277950_99278097_99283429
ENSMUSG00000033186.10_99271696_99283556_1	chr14	-	2470	4	NNC	ENSMUSG00000033186.10	novel	2240	3	NA	NA	0	284	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	385.421270242777	1717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGACAATTCAGATAAATA	NA	False	NA	NA	False	GATAAA	-2	NA	99283556	99271695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_99271753_99271806_99273947_99277950_99278097_99283429
ENSMUSG00000033186.10_99272923_99283556_1	chr14	-	1297	3	FSM	ENSMUSG00000033186.10	ENSMUST00000042662.10	2240	3	0	943	0	299	multi-exon	FALSE	canonical	3	792	junction_1	24.5	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATGGTCAAAGATAAATTT	NA	False	NA	NA	False	ATTAAA	-19	NA	99283556	99272922	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_99273947_99277950_99278097_99283429
ENSMUSG00000033186.10_99273514_99283556_1	chr14	-	706	3	FSM	ENSMUSG00000033186.10	ENSMUST00000042662.10	2240	3	0	1534	0	191	multi-exon	FALSE	canonical	3	792	junction_1	24.5	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTGTGTGTTCCATTGA	NA	False	NA	NA	False	TATAAA	-31	NA	99283556	99273513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_99273947_99277950_99278097_99283429
ENSMUSG00000033209.18_111026610_111091753_1	chr5	+	631	3	NNC	ENSMUSG00000033209.18	novel	10780	24	NA	NA	-1059	29571	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	2	43	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATTGTGGCTTTTAGAT	NA	False	NA	NA	False	AATAAA	-24	NA	111026609	111091753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_111026695_111040697_111040977_111091486
ENSMUSG00000033213.17_122479835_122483005_1	chr2	+	665	3	FSM	ENSMUSG00000033213.17	ENSMUST00000175727.2	523	3	0	-142	0	0	multi-exon	FALSE	canonical	3	10	junction_1	53.5	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGATTTGTGCAAGAGATA	NA	False	NA	23	True	AATAAA	-25	NA	122479834	122483005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_122480054_122481135_122481197_122482620
ENSMUSG00000033213.17_122479835_122483005_2	chr2	+	621	5	FSM	ENSMUSG00000033213.17	ENSMUST00000047498.15	792	5	65	106	0	0	multi-exon	FALSE	canonical	3	117	junction_4	21.9146070008111	2596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGATTTGTGCAAGAGATA	NA	False	NA	23	True	AATAAA	-25	NA	122479834	122483005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_122479862_122479991_122480054_122480176_122480263_122481135_122481197_122482620
ENSMUSG00000033213.17_122479835_122483005_3	chr2	+	535	4	NIC	ENSMUSG00000033213.17	novel	751	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	57.249939349798	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGATTTGTGCAAGAGATA	NA	False	NA	23	True	AATAAA	-25	NA	122479834	122483005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_122479862_122479991_122480054_122481135_122481197_122482620
ENSMUSG00000033216.10_88234855_88423489_1	chr6	-	1448	6	NIC	ENSMUSG00000033216.10	novel	2208	8	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_2	158.228189650264	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCTAGTGTGCCCATAGT	NA	False	NA	-17	True	AATAAA	-12	NA	88423489	88234854	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_88235374_88258530_88258688_88332464_88332630_88335527_88335625_88353185_88353394_88423187
ENSMUSG00000033216.10_88234855_88423489_2	chr6	-	2108	7	FSM	ENSMUSG00000033216.10	ENSMUST00000165242.4	2679	7	32	539	-5	0	multi-exon	FALSE	canonical	3	371	junction_3	47.1643108952333	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCTAGTGTGCCCATAGT	NA	False	NA	-17	True	AATAAA	-12	NA	88423489	88234854	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_88235374_88258530_88258688_88274558_88275219_88332464_88332630_88335527_88335625_88353185_88353394_88423187
ENSMUSG00000033220.8_78445066_78456981_1	chr15	-	1337	7	FSM	ENSMUSG00000033220.8	ENSMUST00000043214.8	3038	7	2	1699	0	1029	multi-exon	FALSE	canonical	3	13	junction_3	5.64702478203247	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTGATTCTTTTGGTGG	NA	False	NA	NA	False	NA	NA	NA	78456981	78445065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_78445686_78446105_78446239_78449062_78449223_78449640_78449704_78450113_78450232_78454931_78455004_78456810
ENSMUSG00000033222.17_100873472_100876979_1	chr3	-	1084	3	ISM	ENSMUSG00000033222.17	ENSMUST00000127357.2	4544	17	0	19806	0	-7396	5prime_fragment	FALSE	canonical	3	266	junction_1	3.5	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACTGACCCTAAGTT	NA	False	NA	NA	False	NA	NA	NA	100876979	100873471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_100874409_100876748_100876852_100876935
ENSMUSG00000033272.13_36812632_36815042_1	chr18	+	606	3	FSM	ENSMUSG00000033272.13	ENSMUST00000185899.2	312	3	-30	-264	0	264	multi-exon	FALSE	canonical	3	269	junction_1	96	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTGTCTCTGATCCTCAG	NA	False	NA	NA	False	NA	NA	NA	36812631	36815042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_36812677_36813568_36813668_36814580
ENSMUSG00000033287.17_78312862_78323503_1	chr15	+	1446	6	FSM	ENSMUSG00000033287.18	ENSMUST00000159771.8	986	6	0	-460	0	0	multi-exon	FALSE	canonical	3	32	junction_5	37.5819105421744	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTTTCTCTGGGCCACT	NA	False	NA	24	True	AATAAA	-31	NA	78312861	78323503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78322686
ENSMUSG00000033294.12_110796451_110801252_1	chr5	-	1869	15	NNC	ENSMUSG00000033294.12	novel	2075	15	NA	NA	-6	-167	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	185.501815272487	1381	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTTTTTAGTGTGGTT	8872	False	NA	-11	True	AATAAA	-15	NA	110801252	110796450	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_110796850_110796931_110797046_110797197_110797281_110797398_110797560_110797669_110797781_110797937_110797999_110798200_110798313_110798399_110798451_110798810_110798846_110798977_110799078_110799177_110799328_110799544_110799653_110800178_110800278_110800876_110800998_110801088
ENSMUSG00000033294.12_110796451_110801252_3	chr5	-	1868	15	NNC	ENSMUSG00000033294.12	novel	2075	15	NA	NA	-6	-167	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	183.658400742425	1374	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTTTTTAGTGTGGTT	8872	False	NA	-11	True	AATAAA	-15	NA	110801252	110796450	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_110796850_110796931_110797046_110797197_110797281_110797398_110797560_110797669_110797781_110797937_110797999_110798200_110798313_110798399_110798451_110798810_110798846_110798977_110799078_110799177_110799328_110799544_110799653_110800178_110800286_110800876_110800989_110801088
ENSMUSG00000033307.8_75695187_75695851_1	chr10	-	402	3	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	175	0	at_least_one_novel_splicesite	FALSE	canonical	2	1646	junction_2	5586	989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75695851	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695520_75695694_75695813
ENSMUSG00000033307.8_75695187_75696074_1	chr10	-	514	3	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6409	1240	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75696074	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695520_75695664_75695894
ENSMUSG00000033307.8_75695187_75696074_2	chr10	-	514	3	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8528	613	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75696074	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695550_75695694_75695894
ENSMUSG00000033307.8_75695187_75696074_3	chr10	-	530	3	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8528	1799	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75696074	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695534_75695694_75695894
ENSMUSG00000033307.8_75695187_75696074_4	chr10	-	492	3	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	256	junction_1	8400	447	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75696074	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695572_75695694_75695894
ENSMUSG00000033307.8_75695187_75696074_5	chr10	-	513	3	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	6409	1397	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75696074	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695520_75695694_75695925
ENSMUSG00000033307.8_75695187_75696074_6	chr10	-	526	3	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8528	1403	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75696074	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695538_75695694_75695894
ENSMUSG00000033307.8_75695187_75696074_7	chr10	-	523	3	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6409	3107	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75696074	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695520_75695694_75695915
ENSMUSG00000033307.8_75695187_75696074_8	chr10	-	528	3	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8528	1501	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75696074	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695536_75695694_75695894
ENSMUSG00000033307.8_75695187_75696111_1	chr10	-	567	3	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6409	4439	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75696111	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695520_75695694_75695908
ENSMUSG00000033307.8_75695187_75696111_2	chr10	-	437	3	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6409	408	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75696111	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695520_75695550_75695894
ENSMUSG00000033307.8_75695187_75698113_1	chr10	-	796	4	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	-2039	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	7244.40645525145	63016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75698113	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695520_75695694_75695894_75696241_75698027
ENSMUSG00000033307.8_75695187_75701714_1	chr10	-	792	4	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	-5640	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	7250.35752375165	63081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75701714	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695520_75695694_75695894_75696241_75701632
ENSMUSG00000033307.8_75695187_75701717_1	chr10	-	763	4	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	-5643	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	7250.35752375165	63011	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75701717	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695520_75695694_75695894_75696209_75701632
ENSMUSG00000033307.8_75695187_75806058_1	chr10	-	1006	4	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	-109984	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7250.81531047831	62848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75806058	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695520_75695694_75695894_75696160_75805681
ENSMUSG00000033307.8_75695187_75806058_2	chr10	-	935	4	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	-109984	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7250.81531047831	52222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75806058	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695520_75695694_75695894_75696089_75805681
ENSMUSG00000033307.8_75695187_75806058_3	chr10	-	984	4	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	-109984	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7250.81531047831	62744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75806058	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695520_75695694_75695894_75696138_75805681
ENSMUSG00000033307.8_75695187_75806058_4	chr10	-	962	4	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	-109984	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7250.81531047831	61924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75806058	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75695378_75695520_75695694_75695894_75696116_75805681
ENSMUSG00000033318.8_75667679_75670244_1	chr10	-	899	5	FSM	ENSMUSG00000033318.8	ENSMUST00000038257.7	1370	5	471	0	-27	0	multi-exon	FALSE	canonical	3	39	junction_1	6.29980158417708	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTTTTTTTTCTTTTTT	NA	False	NA	-4	True	AATAAA	-21	NA	75670244	75667678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_75667929_75668228_75668403_75668494_75668646_75669485_75669574_75670008
ENSMUSG00000033318.8_75667679_75671414_1	chr10	-	1014	6	NNC	ENSMUSG00000033318.8	novel	1370	5	NA	NA	-699	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	16.6805275695944	297	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTTTTTTTTCTTTTTT	NA	False	NA	-4	True	AATAAA	-21	NA	75671414	75667678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75667929_75668228_75668403_75668494_75668646_75669485_75669574_75670008_75670242_75671296
ENSMUSG00000033318.8_75667679_75671414_2	chr10	-	693	4	NNC	ENSMUSG00000033318.8	novel	1370	5	NA	NA	-699	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	22.9927524813074	92	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTTTTTTTTCTTTTTT	NA	False	NA	-4	True	AATAAA	-21	NA	75671414	75667678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75667929_75668228_75668403_75668494_75668646_75671296
ENSMUSG00000033318.8_75667679_75673201_1	chr10	-	728	4	NIC	ENSMUSG00000033318.8	novel	2254	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	22.0957512255687	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTTTTTTTTCTTTTTT	NA	False	NA	-4	True	AATAAA	-21	NA	75673201	75667678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_75667929_75668228_75668403_75668494_75668646_75673048
ENSMUSG00000033319.6_46637968_46658926_1	chr18	-	2459	3	FSM	ENSMUSG00000033319.6	ENSMUST00000036226.6	5726	3	112	3155	112	-3155	multi-exon	FALSE	canonical	3	135	junction_1	21.5	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTTGTGAATTATTGAG	NA	False	NA	-20	True	TATAAA	-15	NA	46658926	46637967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_46639457_46657168_46657897_46658684
ENSMUSG00000033335.18_21336228_21376912_1	chr9	+	434	3	ISM	ENSMUSG00000033335.18	ENSMUST00000169194.9	1591	15	-311	25810	0	-2084	5prime_fragment	TRUE	canonical	3	562	junction_1	9.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACAGACTTTGATGAAGT	5866	False	NA	NA	False	NA	NA	NA	21336227	21376912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_21336553_21368798_21368873_21376877
ENSMUSG00000033373.17_76884188_76967137_1	chr12	+	1564	12	FSM	ENSMUSG00000033373.17	ENSMUST00000041008.10	2613	12	0	1049	0	132	multi-exon	FALSE	canonical	3	246	junction_4	27.7548298231568	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACGGTGGTGTGATTTTT	NA	False	NA	NA	False	AAAACA	-24	NA	76884187	76967137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_76884426_76909259_76909325_76920149_76920223_76921805_76921898_76934505_76934653_76934745_76934830_76944100_76944188_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
ENSMUSG00000033379.14_117741530_117744530_1	chr4	-	1053	8	NIC	ENSMUSG00000033379.14	novel	1000	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_7	877.288982709616	2955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCAGTGAGGCTTCTGT	NA	False	NA	-8	True	AATAAA	-14	NA	117744530	117741529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743892_117744366
ENSMUSG00000033379.14_117741642_117744530_1	chr4	-	885	8	FSM	ENSMUSG00000033379.14	ENSMUST00000036380.14	1000	8	-4	119	0	0	multi-exon	FALSE	canonical	3	2123	junction_7	187.196393650942	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGGAGTGGGCTGCTG	NA	False	NA	-120	True	NA	NA	NA	117744530	117741641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744366
ENSMUSG00000033382.16_20895746_20997370_1	chr18	-	596	4	NNC	ENSMUSG00000033382.16	novel	5194	29	NA	NA	-1390	54534	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	162	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCCAGCCAATGACTCC	4167	False	NA	NA	False	NA	NA	NA	20997370	20895745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_20895821_20951304_20951388_20988668_20988771_20997034
ENSMUSG00000033396.14_121859027_121884112_2	chr2	-	2446	8	NIC	ENSMUSG00000033396.14	novel	7671	40	NA	NA	64665	24974	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	4412	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGAGGCTCCGCCCCACG	NA	False	NA	NA	False	NA	NA	NA	121884112	121859026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_121859206_121859288_121859393_121871636_121871692_121872062_121872155_121877916_121878032_121880967_121881130_121882222_121882297_121882447
ENSMUSG00000033411.17_121786961_121809415_1	chr2	+	530	4	ISM	ENSMUSG00000033411.17	ENSMUST00000131258.8	4290	6	-6	11460	0	-11460	5prime_fragment	FALSE	canonical	3	361	junction_3	50.7302232949507	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGAAAATTAGAAGATAACC	NA	False	NA	NA	False	TATAAA	-7	NA	121786960	121809415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372
ENSMUSG00000033423.17_117410163_117531478_1	chr4	+	1333	8	NNC	ENSMUSG00000033423.17	novel	1719	9	NA	NA	356	0	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_1	225.171317998051	1608	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTGTGTCTGGAGCCA	NA	False	NA	9	True	AATAAA	-16	NA	117410162	117531478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_117410241_117421823_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ENSMUSG00000033423.17_117410163_117531478_2	chr4	+	1405	8	NNC	ENSMUSG00000033423.17	novel	1719	9	NA	NA	356	0	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_7	253.29703463543	1590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTGTGTCTGGAGCCA	NA	False	NA	9	True	AATAAA	-16	NA	117410162	117531478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506670_117530937
ENSMUSG00000033429.11_64042488_64061873_1	chr7	+	576	3	NNC	ENSMUSG00000033429.11	novel	828	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	99	468	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTTGTTATTTGAATTT	NA	False	NA	25	True	ATTAAA	-26	NA	64042487	64061873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_64042592_64050073_64050255_64061582
ENSMUSG00000033429.11_64042488_64061873_2	chr7	+	733	3	FSM	ENSMUSG00000033429.11	ENSMUST00000037205.11	828	3	95	0	0	0	multi-exon	FALSE	canonical	3	203	junction_2	55.5	4755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTTGTTATTTGAATTT	NA	False	NA	25	True	ATTAAA	-26	NA	64042487	64061873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_64042592_64049916_64050255_64061582
ENSMUSG00000033429.11_64042488_64061873_3	chr7	+	792	4	NNC	ENSMUSG00000033429.11	novel	828	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	40.2022663816634	1493	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTTGTTATTTGAATTT	NA	False	NA	25	True	ATTAAA	-26	NA	64042487	64061873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_64042592_64048440_64048662_64049916_64050093_64061582
ENSMUSG00000033430.11_112738034_112745833_1	chr8	+	2229	3	FSM	ENSMUSG00000033430.11	ENSMUST00000052138.11	3560	3	4	1327	0	-1327	multi-exon	FALSE	canonical	3	135	junction_1	1.5	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCATTTTCTTTGATTTT	NA	False	NA	NA	False	AATAAA	-27	NA	112738033	112745833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_112738775_112741968_112742094_112744470
ENSMUSG00000033434.16_110251841_110255282_1	chr5	-	1347	10	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	76.178315828516	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110255282	110251840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255210
ENSMUSG00000033434.16_110251841_110256006_1	chr5	-	1351	8	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_7	80.7902297588625	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110256006	110251840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110255721
ENSMUSG00000033434.16_110251841_110256063_1	chr5	-	1609	10	NNC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	76.922439693467	548	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110256063	110251840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_110252035_110252133_110252287_110252383_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255721
ENSMUSG00000033439.13_116382563_116388519_1	chr3	-	1163	6	ISM	ENSMUSG00000033439.13	ENSMUST00000156161.8	1991	9	17	4790	-10	654	5prime_fragment	FALSE	canonical	3	87	junction_2	15.6920361967464	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAACATTTGGTTCTGAGT	NA	False	NA	NA	False	NA	NA	NA	116388519	116382562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
ENSMUSG00000033439.13_116388659_116399660_1	chr3	-	657	4	NIC	ENSMUSG00000033439.13	novel	3402	12	NA	NA	8110	384	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCCCGCGGAGGAGGAGG	NA	False	NA	NA	False	NA	NA	NA	116399660	116388658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_116388828_116397110_116397172_116398845_116398926_116399313
ENSMUSG00000033460.15_133618737_133622666_1	chrX	+	2263	6	NNC	ENSMUSG00000033460.15	novel	2303	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	59.4151495832502	386	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618736	133622666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619742_133620375_133620475_133620823
ENSMUSG00000033460.15_133618737_133622666_3	chrX	+	2194	4	NNC	ENSMUSG00000033460.15	novel	2253	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	53.074371299987	347	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618736	133622666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_133618800_133619668_133619858_133620375_133620475_133620823
ENSMUSG00000033460.15_133618737_133622666_4	chrX	+	2078	4	NNC	ENSMUSG00000033460.15	novel	2179	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	112	junction_3	34.8839345385363	374	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618736	133622666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_133618800_133619668_133619742_133620375_133620475_133620823
ENSMUSG00000033467.13_109702575_109703441_1	chr5	-	516	3	ISM	ENSMUSG00000033467.13	ENSMUST00000198960.2	812	5	898	-6	898	0	3prime_fragment	FALSE	canonical	3	516	junction_2	49.5	1730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109703441	109702574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_109702937_109703138_109703224_109703372
ENSMUSG00000033467.13_109702575_109703441_2	chr5	-	665	2	ISM	ENSMUSG00000033467.13	ENSMUST00000198960.2	812	5	898	-6	898	0	intron_retention	FALSE	canonical	3	615	junction_1	0	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109703441	109702574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_109702937_109703138
ENSMUSG00000033467.13_109702575_109703441_3	chr5	-	431	2	NIC	ENSMUSG00000033467.13	novel	1405	8	NA	NA	898	0	combination_of_known_splicesites	FALSE	canonical	3	38	junction_1	0	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109703441	109702574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_109702937_109703372
ENSMUSG00000033467.13_109702575_109703688_1	chr5	-	631	4	NNC	ENSMUSG00000033467.13	novel	1405	8	NA	NA	651	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	264.499947490018	2918	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109703688	109702574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_109702937_109703138_109703224_109703372_109703494_109703625
ENSMUSG00000033467.13_109702575_109704415_1	chr5	-	861	5	ISM	ENSMUSG00000033467.13	ENSMUST00000200284.5	1405	8	2387	0	-76	0	3prime_fragment	FALSE	canonical	1	50	junction_4	239.958720408324	3538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109704415	109702574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285
ENSMUSG00000033475.16_47997571_47998993_1	chr17	-	634	3	FSM	ENSMUSG00000033475.16	ENSMUST00000113302.10	749	3	115	0	0	0	multi-exon	FALSE	canonical	3	3748	junction_1	369	33561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTCAAGAGACAGGCATG	NA	False	NA	82	True	AATAAA	-16	NA	47998993	47997570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_47997934_47998112_47998214_47998823
ENSMUSG00000033475.16_47997665_47998993_1	chr17	-	540	3	FSM	ENSMUSG00000033475.16	ENSMUST00000113302.10	749	3	115	94	0	0	multi-exon	FALSE	canonical	3	3748	junction_1	369	32002	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTATTTTATTCTTTT	NA	False	NA	-12	True	AATAAA	-15	NA	47998993	47997664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_47997934_47998112_47998214_47998823
ENSMUSG00000033530.9_100267029_100291870_1	chr12	-	1069	2	ISM	ENSMUSG00000033530.9	ENSMUST00000223255.2	695	3	7298	-840	7298	0	3prime_fragment	FALSE	canonical	3	240	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGGCTTTTGTCTTTCA	NA	False	NA	-1	True	AATAAA	-21	NA	100291870	100267028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_100268030_100291802
ENSMUSG00000033543.18_69919856_69930020_1	chr9	+	1009	5	NIC	ENSMUSG00000033543.18	novel	1199	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	38	junction_3	356.599477705731	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919855	69930020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_69919944_69922573_69922693_69924100_69924474_69926670_69926798_69929718
ENSMUSG00000033543.18_69919856_69930020_2	chr9	+	741	5	FSM	ENSMUSG00000033543.18	ENSMUST00000118198.8	893	5	24	128	0	0	multi-exon	FALSE	canonical	3	697	junction_3	95.7131129992124	6204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919855	69930020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69926670_69926798_69929718
ENSMUSG00000033543.18_69919856_69930020_3	chr9	+	911	6	NIC	ENSMUSG00000033543.18	novel	1199	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_2	366.992098007573	4736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919855	69930020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_69919944_69922573_69922693_69923049_69923220_69924100_69924206_69926670_69926798_69929718
ENSMUSG00000033554.18_115681843_115722737_1	chr3	+	1245	9	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	90.812220405626	1838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTGTTTTATAATCTCC	7769	False	NA	8	True	AATAAA	-18	NA	115681842	115722737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157_115722405_115722480
ENSMUSG00000033554.18_115681843_115722737_2	chr3	+	1321	8	FSM	ENSMUSG00000033554.18	ENSMUST00000043342.10	1576	8	11	244	0	0	multi-exon	FALSE	canonical	3	254	junction_6	12.9331089117215	2145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTGTTTTATAATCTCC	7769	False	NA	8	True	AATAAA	-18	NA	115681842	115722737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157
ENSMUSG00000033554.18_115681843_115722737_3	chr3	+	1071	9	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	90.812220405626	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTGTTTTATAATCTCC	7769	False	NA	8	True	AATAAA	-18	NA	115681842	115722737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157_115722231_115722480
ENSMUSG00000033554.18_115681843_115722737_4	chr3	+	1090	9	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_8	88.5183596775268	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTGTTTTATAATCTCC	7769	False	NA	8	True	AATAAA	-18	NA	115681842	115722737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157_115722250_115722480
ENSMUSG00000033554.18_115681843_115722981_1	chr3	+	1489	9	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	90.812220405626	2052	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGCAGTCAGCGACTGAG	7769	False	NA	NA	False	TTTAAA	-6	NA	115681842	115722981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157_115722405_115722480
ENSMUSG00000033565.19_76968108_76988482_1	chr15	-	898	9	NNC	ENSMUSG00000033565.19	novel	1694	13	NA	NA	-14582	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_8	64.6799814471216	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGGGTTGGTTTTTTGGGG	NA	False	NA	NA	False	NA	NA	NA	76988482	76968107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76988426
ENSMUSG00000033578.8_133196140_133206718_1	chrX	+	1752	2	FSM	ENSMUSG00000033578.8	ENSMUST00000037687.8	1918	2	166	0	166	0	multi-exon	FALSE	canonical	1	1	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGGTGTGGATATGGA	NA	False	NA	6	True	AATAAA	-18	NA	133196139	133206718	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_133196379_133205205
ENSMUSG00000033581.18_21877759_21886962_1	chr16	-	2268	5	ISM	ENSMUSG00000033581.18	ENSMUST00000134188.8	3267	14	20906	-65	-4515	0	3prime_fragment	FALSE	canonical	3	902	junction_2	64.8478989636519	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGTCTTGGTGTCTT	NA	False	NA	NA	False	AATATA	-16	NA	21886962	21877758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892
ENSMUSG00000033594.12_123951600_123958993_1	chr8	-	1524	12	NIC	ENSMUSG00000033594.12	novel	1574	2	NA	NA	3953	4940	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	154	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGCGCGCAGGCGTAAC	2598	False	NA	NA	False	NA	NA	NA	123958993	123951599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_123951708_123953085_123953159_123953684_123953757_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
ENSMUSG00000033594.12_123951600_123958993_2	chr8	-	1589	13	NIC	ENSMUSG00000033594.12	novel	1574	2	NA	NA	3953	4940	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1307	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGCGCGCAGGCGTAAC	2598	False	NA	NA	False	NA	NA	NA	123958993	123951599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_123951670_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
ENSMUSG00000033623.14_108609179_108648730_1	chr5	+	1515	11	FSM	ENSMUSG00000033623.14	ENSMUST00000046975.12	7708	11	81	6112	0	4574	multi-exon	FALSE	canonical	3	114	junction_9	9.83666610188635	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAAGAGGCTTGCAGCAA	NA	False	NA	NA	False	TATAAA	-19	NA	108609178	108648730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_108609318_108619937_108619978_108620242_108620384_108621654_108621773_108622975_108623073_108626168_108626225_108634005_108634114_108635701_108635791_108643699_108643838_108647492_108647574_108648222
ENSMUSG00000033632.17_25302077_25337112_1	chr18	+	536	5	ISM	ENSMUSG00000033632.17	ENSMUST00000162149.2	1427	6	0	86853	0	14822	5prime_fragment	FALSE	canonical	3	40	junction_3	4.32290411644765	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTTATACTTTATTTT	NA	False	NA	NA	False	AAGAAA	-19	NA	25302076	25337112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25336917
ENSMUSG00000033653.19_21446381_21463426_1	chr16	+	982	3	FSM	ENSMUSG00000033653.19	ENSMUST00000127903.2	722	3	0	-260	0	1	multi-exon	FALSE	canonical	1	8	junction_1	94.5	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCCAGTCTCTTGGTT	NA	False	NA	17	True	AATAAA	-23	NA	21446380	21463426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_21446726_21459428_21459510_21462870
ENSMUSG00000033658.17_111734644_111754397_1	chr8	-	1789	12	FSM	ENSMUSG00000033658.17	ENSMUST00000040241.15	6612	12	-1	4824	-1	-1353	multi-exon	FALSE	canonical	3	85	junction_11	90.8713558047041	242	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCATCTTTTTTTTTTGG	NA	False	NA	2	True	AATACA	-20	NA	111754397	111734643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111754229
ENSMUSG00000033685.14_100142561_100148509_1	chr7	+	1253	8	FSM	ENSMUSG00000033685.14	ENSMUST00000126534.8	3988	8	17	2718	0	0	multi-exon	TRUE	canonical	3	366	junction_1	56.4938140012529	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAGCCCTAATGGCTGC	NA	False	NA	NA	False	NA	NA	NA	100142560	100148509	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_100142673_100143420_100143583_100145932_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
ENSMUSG00000033685.14_100142561_100148832_1	chr7	+	1569	8	NNC	ENSMUSG00000033685.14	novel	3988	8	NA	NA	0	323	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	164.266210022336	3554	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	13	True	CATAAA	-15	NA	100142560	100148832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_100142673_100143420_100143583_100145932_100146156_100146308_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
ENSMUSG00000033685.14_100142561_100148832_2	chr7	+	1565	8	NNC	ENSMUSG00000033685.14	novel	3988	8	NA	NA	0	323	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	164.421931105833	3837	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	13	True	CATAAA	-15	NA	100142560	100148832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_100142673_100143420_100143583_100145943_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
ENSMUSG00000033685.14_100142561_100148832_3	chr7	+	1566	8	NNC	ENSMUSG00000033685.14	novel	3988	8	NA	NA	0	323	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	163.99452454772	1803	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	13	True	CATAAA	-15	NA	100142560	100148832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_100142673_100143430_100143583_100145932_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
ENSMUSG00000033685.14_100142561_100148832_4	chr7	+	1494	8	NNC	ENSMUSG00000033685.14	novel	3988	8	NA	NA	0	323	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	163.760028513601	431	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	13	True	CATAAA	-15	NA	100142560	100148832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_100142673_100143420_100143583_100146014_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
ENSMUSG00000033685.14_100142561_100148832_5	chr7	+	1381	7	NIC	ENSMUSG00000033685.14	novel	3988	8	NA	NA	0	323	combination_of_known_splicesites	FALSE	canonical	2	4	junction_4	173.079622011245	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	13	True	CATAAA	-15	NA	100142560	100148832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_100142673_100143420_100143583_100145932_100146156_100146301_100146513_100147554_100147657_100147942_100148124_100148442
ENSMUSG00000033685.14_100142561_100148832_6	chr7	+	1572	8	NNC	ENSMUSG00000033685.14	novel	3988	8	NA	NA	0	323	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	164.328814222197	4071	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	13	True	CATAAA	-15	NA	100142560	100148832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_100142679_100143430_100143583_100145932_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
ENSMUSG00000033701.14_155434084_155448034_1	chr1	+	775	4	FSM	ENSMUSG00000033701.14	ENSMUST00000080138.13	993	4	218	0	212	0	multi-exon	FALSE	canonical	3	223	junction_3	63.2525800966956	798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTT	NA	False	NA	15	True	NA	NA	NA	155434083	155448034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155447943
ENSMUSG00000033701.14_155434084_155562979_1	chr1	+	1279	8	FSM	ENSMUSG00000033701.14	ENSMUST00000035560.9	5592	8	216	4097	212	138	multi-exon	TRUE	canonical	3	134	junction_7	98.5478232605254	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCGACGTCTCAGCAACTC	NA	False	NA	29	True	AATAAA	-21	NA	155434083	155562979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155477199_155477283_155491612_155491719_155500614_155500705_155552949_155552981_155562694
ENSMUSG00000033701.14_155434423_155448034_1	chr1	+	436	4	FSM	ENSMUSG00000033701.14	ENSMUST00000080138.13	993	4	557	0	551	0	multi-exon	FALSE	canonical	3	223	junction_3	63.2525800966956	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTT	NA	False	NA	15	True	NA	NA	NA	155434422	155448034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155447943
ENSMUSG00000033701.14_155434423_155562841_1	chr1	+	802	8	FSM	ENSMUSG00000033701.14	ENSMUST00000035560.9	5592	8	555	4235	551	0	multi-exon	FALSE	canonical	3	134	junction_7	98.5478232605254	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTTGATCCAAAGCCTGA	NA	False	NA	NA	False	NA	NA	NA	155434422	155562841	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155477199_155477283_155491612_155491719_155500614_155500705_155552949_155552981_155562694
ENSMUSG00000033701.14_155434423_155562979_1	chr1	+	940	8	FSM	ENSMUSG00000033701.14	ENSMUST00000035560.9	5592	8	555	4097	551	138	multi-exon	FALSE	canonical	3	134	junction_7	98.5478232605254	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCGACGTCTCAGCAACTC	NA	False	NA	29	True	AATAAA	-21	NA	155434422	155562979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155477199_155477283_155491612_155491719_155500614_155500705_155552949_155552981_155562694
ENSMUSG00000033706.14_85408984_85422414_1	chr6	+	1470	13	FSM	ENSMUSG00000033706.14	ENSMUST00000045693.8	2486	13	13	1003	0	0	multi-exon	FALSE	canonical	3	411	junction_7	60.725246442938	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCCATCACAAGCCTTCCA	NA	False	NA	NA	False	NA	NA	NA	85408983	85422414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_85409083_85415089_85415199_85415731_85415872_85416638_85416758_85417087_85417158_85417621_85417727_85418541_85418605_85418719_85418791_85419092_85419200_85419580_85419638_85421224_85421320_85421899_85421971_85422050
ENSMUSG00000033720.13_85295854_85310401_1	chr6	-	279	3	NIC	ENSMUSG00000033720.13	novel	638	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	4	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	85310401	85295853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_85295952_85296503_85296573_85310289
ENSMUSG00000033728.15_76594843_76599291_1	chr15	+	2236	4	FSM	ENSMUSG00000033728.15	ENSMUST00000127208.8	4849	4	5	2608	0	0	multi-exon	FALSE	canonical	3	39	junction_1	34.1792659696229	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTAGTGTTGCTTTATCA	NA	False	NA	NA	False	NA	NA	NA	76594842	76599291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76595128_76597066_76597421_76597600_76598186_76598279
ENSMUSG00000033751.6_85558913_85561093_1	chr8	+	714	2	FSM	ENSMUSG00000033751.6	ENSMUST00000036734.6	2494	2	762	1018	762	-1018	multi-exon	FALSE	canonical	3	736	junction_1	0	1899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCTACACATTCTCCCTC	3436	False	NA	25	True	AATAAA	-20	NA	85558912	85561093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85559270_85560736
ENSMUSG00000033751.6_85558913_85562111_1	chr8	+	1732	2	FSM	ENSMUSG00000033751.6	ENSMUST00000036734.6	2494	2	762	0	762	0	multi-exon	FALSE	canonical	3	736	junction_1	0	2025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATATATATACTTTCTC	3436	False	NA	NA	False	NA	NA	NA	85558912	85562111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85559270_85560736
ENSMUSG00000033752.8_83995240_84063093_1	chr3	-	800	7	NIC	ENSMUSG00000033752.8	novel	875	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_3	79.9112354775945	1268	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	84063093	83995239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_83995482_84000861_84000907_84012241_84012357_84041324_84041474_84045475_84045534_84049005_84049072_84062968
ENSMUSG00000033752.8_83995240_84063093_2	chr3	-	760	7	NIC	ENSMUSG00000033752.8	novel	875	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	3	junction_2	82.0137183646736	378	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	84063093	83995239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_83995482_84000861_84000907_84023733_84023809_84041324_84041474_84045475_84045534_84049005_84049072_84062968
ENSMUSG00000033752.8_83995240_84063093_3	chr3	-	869	8	NNC	ENSMUSG00000033752.8	novel	875	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	78.2043372668482	4882	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	84063093	83995239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_83995482_84000861_84000907_84012241_84012357_84023733_84023809_84041324_84041474_84045475_84045534_84049005_84049066_84062968
ENSMUSG00000033752.8_83995240_84063093_4	chr3	-	873	8	NNC	ENSMUSG00000033752.8	novel	875	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	76.9712376707782	4905	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	84063093	83995239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_83995482_84000861_84000901_84012237_84012357_84023733_84023809_84041324_84041474_84045475_84045534_84049005_84049072_84062968
ENSMUSG00000033760.18_4806599_4809006_1	chr19	+	1824	2	FSM	ENSMUSG00000033760.18	ENSMUST00000182065.2	4194	2	6	2364	0	-1723	multi-exon	FALSE	canonical	3	81	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTATTTGCAACCACGATT	NA	False	NA	NA	False	AATAAA	-23	NA	4806598	4809006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4806690_4807273
ENSMUSG00000033767.15_83805516_83812422_1	chr3	-	841	5	ISM	ENSMUSG00000033767.15	ENSMUST00000052342.9	4815	34	135060	0	2464	0	3prime_fragment	FALSE	canonical	3	75	junction_3	14.1155942134931	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTTTGTTTATTTTTG	NA	False	NA	-26	True	AATAAA	-14	NA	83812422	83805515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_83805921_83806483_83806624_83807633_83807726_83808652_83808774_83812339
ENSMUSG00000033770.14_141111921_141117132_1	chr4	-	1238	6	ISM	ENSMUSG00000033770.14	ENSMUST00000105790.8	2511	19	8383	0	5006	0	3prime_fragment	FALSE	canonical	3	33	junction_5	1.6	180	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTTCACCCATCTTC	NA	False	NA	1	True	AATAAA	-20	NA	141117132	141111920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_141112260_141112587_141112675_141114383_141114468_141114599_141114689_141115444_141115579_141116627
ENSMUSG00000033770.14_141111921_141117412_1	chr4	-	972	7	ISM	ENSMUSG00000033770.14	ENSMUST00000105790.8	2511	19	8103	0	4726	0	3prime_fragment	FALSE	canonical	3	15	junction_6	7.88810637746615	131	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTTCACCCATCTTC	NA	False	NA	1	True	AATAAA	-20	NA	141117412	141111920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_141112260_141112587_141112675_141114383_141114468_141114599_141114689_141115444_141115579_141116627_141116842_141117387
ENSMUSG00000033781.8_3684032_3700583_1	chr13	+	1214	6	FSM	ENSMUSG00000033781.8	ENSMUST00000042288.8	4453	6	0	3239	0	97	multi-exon	FALSE	canonical	3	52	junction_4	6.61513416341649	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCAGTTCTCTGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	3684031	3700583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_3684176_3692064_3692253_3693474_3693626_3694915_3695051_3699318_3699511_3700179
ENSMUSG00000033781.8_3684032_3701774_1	chr13	+	2405	6	FSM	ENSMUSG00000033781.8	ENSMUST00000042288.8	4453	6	0	2048	0	1288	multi-exon	FALSE	canonical	3	52	junction_4	6.61513416341649	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCCCTGTGTCTTATT	NA	False	NA	6	True	AATAAA	-15	NA	3684031	3701774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_3684176_3692064_3692253_3693474_3693626_3694915_3695051_3699318_3699511_3700179
ENSMUSG00000033793.13_5153355_5169535_1	chr1	+	911	7	NNC	ENSMUSG00000033793.13	novel	1811	13	NA	NA	0	-465	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	186.553834946734	67	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTATTATTATATCTAAATA	NA	False	NA	NA	False	AATAAA	-15	NA	5153354	5169535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5169330
ENSMUSG00000033808.17_120185793_120234562_2	chr2	-	2863	21	NNC	ENSMUSG00000033808.17	novel	2874	20	NA	NA	0	0	intron_retention	TRUE	non_canonical	0	0	junction_1	132.468147114693	216	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	TATAAA	-14	NA	120234562	120185792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_120185973_120186003_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202103_120204372_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ENSMUSG00000033809.16_20424222_20429499_1	chr16	-	1409	9	NNC	ENSMUSG00000033809.16	novel	1451	9	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	138.682134303594	1600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGTGCAGCATACATAA	NA	False	NA	-8	True	AATAAA	-15	NA	20429499	20424221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20427736_20427831_20429288
ENSMUSG00000033809.16_20424222_20429499_2	chr16	-	1002	6	NIC	ENSMUSG00000033809.16	novel	1132	7	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	164.001951207905	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGTGCAGCATACATAA	NA	False	NA	-8	True	AATAAA	-15	NA	20429499	20424221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20429292
ENSMUSG00000033813.16_4928037_4966879_1	chr1	+	1298	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	0	1249	0	-1249	multi-exon	TRUE	canonical	3	1526	junction_2	186.842443693696	1840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTGATCTGTTAATGC	NA	False	NA	NA	False	ATTAAA	-32	NA	4928036	4966879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
ENSMUSG00000033813.16_4928037_4967188_1	chr1	+	1607	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	0	940	0	-940	multi-exon	FALSE	canonical	3	1526	junction_2	186.842443693696	2123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGACTTGGTTTATTTTATT	NA	False	NA	NA	False	AATAGA	-15	NA	4928036	4967188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
ENSMUSG00000033826.11_30845927_30854998_1	chr17	+	894	2	ISM	ENSMUSG00000033826.11	ENSMUST00000237551.2	3099	11	18	23197	0	388	intron_retention	FALSE	canonical	3	45	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGGGTTGGACTTAGTAA	217	False	NA	NA	False	CATAAA	-27	NA	30845926	30854998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_30846117_30854294
ENSMUSG00000033837.6_76552029_76554017_1	chr15	-	1630	3	FSM	ENSMUSG00000033837.6	ENSMUST00000037824.6	1365	3	131	-396	-15	396	multi-exon	FALSE	canonical	3	304	junction_2	19.5	1126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAAGTCTGGTATTGGGG	NA	False	NA	-4	True	AGTAAA	-20	NA	76554017	76552028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76553341_76553428_76553534_76553804
ENSMUSG00000033845.14_4844659_4855921_1	chr1	-	652	5	FSM	ENSMUSG00000033845.14	ENSMUST00000130201.8	1894	5	12	1230	0	0	multi-exon	FALSE	canonical	3	144	junction_1	911.97762445139	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGACATCTGACCAGCAT	1661	False	NA	-18	True	NA	NA	NA	4855921	4844658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_4844740_4847747_4847872_4852790_4852957_4854173_4854329_4855795
ENSMUSG00000033845.14_4846456_4855921_1	chr1	-	1140	5	FSM	ENSMUSG00000033845.14	ENSMUST00000156816.7	4203	5	41	3022	0	144	multi-exon	FALSE	canonical	3	2059	junction_1	113.670576667843	14096	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAATTACCTTTCTTTT	1661	False	NA	NA	False	ATTAAA	-15	NA	4855921	4846455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_4847025_4847747_4847872_4852790_4852957_4854173_4854329_4855795
ENSMUSG00000033845.14_4846600_4855921_1	chr1	-	1047	6	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	1060.96476850082	8146	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTGCTCAGGTCTTTTG	1661	False	NA	-10	True	ATTAAA	-22	NA	4855921	4846599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_4847025_4847747_4847872_4848970_4849022_4852790_4852957_4854173_4854329_4855795
ENSMUSG00000033845.14_4846600_4855921_2	chr1	-	976	5	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	933.140497192143	3800	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTGCTCAGGTCTTTTG	1661	False	NA	-10	True	ATTAAA	-22	NA	4855921	4846599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_4847025_4847747_4847872_4852790_4852957_4854173_4854329_4855815
ENSMUSG00000033845.14_4846600_4855921_3	chr1	-	987	5	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	968.14677993577	3513	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTGCTCAGGTCTTTTG	1661	False	NA	-10	True	ATTAAA	-22	NA	4855921	4846599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_4847025_4847747_4847872_4852799_4852957_4854173_4854329_4855795
ENSMUSG00000033845.14_4846600_4855921_4	chr1	-	841	4	NIC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	24	junction_3	972.77621041818	947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTGCTCAGGTCTTTTG	1661	False	NA	-10	True	ATTAAA	-22	NA	4855921	4846599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_4847025_4847747_4847872_4852790_4852957_4855795
ENSMUSG00000033845.14_4846600_4855921_5	chr1	-	982	5	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	974.097113998394	4335	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTGCTCAGGTCTTTTG	1661	False	NA	-10	True	ATTAAA	-22	NA	4855921	4846599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_4847011_4847747_4847872_4852790_4852957_4854173_4854329_4855795
ENSMUSG00000033845.14_4846600_4855921_6	chr1	-	951	5	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_4	928.393639573215	1565	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTGCTCAGGTCTTTTG	1661	False	NA	-10	True	ATTAAA	-22	NA	4855921	4846599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_4847025_4847747_4847872_4852790_4852957_4854173_4854329_4855840
ENSMUSG00000033845.14_4846600_4855921_7	chr1	-	990	5	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	974.097113998394	5719	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTGCTCAGGTCTTTTG	1661	False	NA	-10	True	ATTAAA	-22	NA	4855921	4846599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_4847025_4847753_4847872_4852790_4852957_4854173_4854329_4855795
ENSMUSG00000033845.14_4851619_4855962_1	chr1	-	1394	4	FSM	ENSMUSG00000033845.14	ENSMUST00000146665.3	1569	4	0	175	0	-175	multi-exon	FALSE	canonical	3	20	junction_1	1077.56031024821	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAAACACTGGTTCACTC	1620	False	NA	-8	True	AATAAA	-18	NA	4855962	4851618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_4852525_4852790_4852957_4854173_4854329_4855795
ENSMUSG00000033857.13_118367786_118378610_1	chr11	+	2504	14	FSM	ENSMUSG00000033857.13	ENSMUST00000171769.8	3807	14	0	1303	0	11	multi-exon	FALSE	canonical	2	6	junction_2	29.6532225814911	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCTTCTTTTGAGAATGG	NA	False	NA	17	True	CATAAA	-24	NA	118367785	118378610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_118367931_118369708_118369780_118369915_118370114_118372101_118372251_118372699_118372858_118373357_118373507_118373707_118373874_118375243_118375348_118375665_118375775_118375949_118376141_118376582_118376732_118377273_118377380_118377647_118377763_118377916
ENSMUSG00000033860.14_82915168_82922113_1	chr3	+	1842	9	FSM	ENSMUSG00000033860.14	ENSMUST00000194175.2	1741	9	0	-101	0	101	multi-exon	FALSE	canonical	3	22	junction_4	1.69096865730859	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTTTGTTTTATTATAT	NA	False	NA	NA	False	AATAAA	-21	NA	82915167	82922113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_82915290_82915459_82915505_82915680_82915865_82915954_82916049_82917370_82917502_82917762_82917897_82918651_82918837_82920070_82920349_82921444
ENSMUSG00000033863.3_23112221_23142547_1	chr19	+	599	2	Fusion	ENSMUSG00000044387.6_ENSMUSG00000033863.3	novel	414	2	NA	NA	-43	-288	multi-exon	FALSE	canonical	3	42	junction_1	0	186	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTGTTTTTGGGGGA	NA	False	NA	NA	False	AATAAA	-15	NA	23112220	23142547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr19_+_23112319_23142046
ENSMUSG00000033863.3_23112221_23142835_2	chr19	+	887	2	Fusion	ENSMUSG00000044387.6_ENSMUSG00000033863.3	novel	414	2	NA	NA	-43	0	multi-exon	FALSE	canonical	3	42	junction_1	0	396	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAACCCTCCATAGCACA	NA	False	NA	NA	False	NA	NA	NA	23112220	23142835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr19_+_23112319_23142046
ENSMUSG00000033916.6_12765941_12768671_1	chr7	-	706	5	FSM	ENSMUSG00000033916.6	ENSMUST00000211344.2	606	5	-100	0	-5	0	multi-exon	FALSE	canonical	3	194	junction_3	1201.14705594278	2313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	6998	False	NA	-11	True	AATAAA	-17	NA	12768671	12765940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12767755_12767970_12768561
ENSMUSG00000033918.17_20098570_20121111_1	chr16	-	1273	9	NIC	ENSMUSG00000033918.17	novel	1348	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_6	575.510208423795	13691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121111	20098569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20116342_20116484_20116880_20117077_20120958
ENSMUSG00000033918.17_20098676_20121111_1	chr16	-	1216	10	FSM	ENSMUSG00000033918.17	ENSMUST00000048642.15	1348	10	26	106	0	0	multi-exon	FALSE	canonical	3	1528	junction_6	107.954723019524	6979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTCAGCATCGGCCACCC	NA	False	NA	-122	True	NA	NA	NA	20121111	20098675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20112103_20112153_20116342_20116484_20116880_20117077_20120958
ENSMUSG00000033931.10_127675776_127697799_1	chr8	-	1402	10	NIC	ENSMUSG00000033931.10	novel	3424	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_8	50.1686046137312	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAGTGTTCAAATGGTCA	NA	False	NA	-11	True	AATAAA	-21	NA	127697799	127675775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127688661_127688722_127692131_127692373_127697487_127697660_127697739
ENSMUSG00000033940.9_113581733_113593656_1	chr6	+	839	3	FSM	ENSMUSG00000033940.9	ENSMUST00000035725.7	1095	3	0	256	0	-256	multi-exon	FALSE	canonical	3	441	junction_2	10.5	2862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGTGACTGTGGTGGCA	NA	False	NA	23	True	AATAAA	-16	NA	113581732	113593656	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_113581858_113592736_113592820_113593025
ENSMUSG00000033955.14_84894241_84903384_1	chr2	+	1453	7	ISM	ENSMUSG00000033955.14	ENSMUST00000048400.4	4799	8	5738	8	2933	2	3prime_fragment	FALSE	canonical	3	230	junction_4	19.0613046073277	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGGTTGTCCAGGATTGT	NA	False	NA	4	True	AATAAA	-13	NA	84894240	84903384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_84894361_84900331_84900702_84900950_84901102_84901216_84901354_84902049_84902208_84902439_84902513_84902940
ENSMUSG00000033972.10_22556970_22580381_1	chr17	-	2711	6	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_3	20.2484567313166	336	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22580381	22556969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577897_22578420_22578506_22580148
ENSMUSG00000033972.10_22558833_22580381_1	chr17	-	921	6	FSM	ENSMUSG00000033972.10	ENSMUST00000115535.3	2784	6	0	1863	0	-1863	multi-exon	FALSE	canonical	3	51	junction_4	24.8997991959775	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTCTATCATTGGTC	NA	False	NA	0	True	TATAAA	-21	NA	22580381	22558832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577970_22578420_22578506_22580148
ENSMUSG00000033972.10_22558833_22580381_2	chr17	-	848	6	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	0	-1863	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_3	20.2484567313166	284	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTCTATCATTGGTC	NA	False	NA	0	True	TATAAA	-21	NA	22580381	22558832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577897_22578420_22578506_22580148
ENSMUSG00000033972.10_22558833_22580381_3	chr17	-	902	7	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	0	-1863	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	35.1946965701747	262	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTCTATCATTGGTC	NA	False	NA	0	True	TATAAA	-21	NA	22580381	22558832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22574061_22574116_22577803_22577897_22578420_22578506_22580148
ENSMUSG00000033972.10_22558833_22580381_4	chr17	-	975	7	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	0	-1863	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	35.9463334554289	214	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTCTATCATTGGTC	NA	False	NA	0	True	TATAAA	-21	NA	22580381	22558832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22574061_22574116_22577803_22577970_22578420_22578506_22580148
ENSMUSG00000033983.15_88864761_88882439_1	chr11	+	1508	6	NIC	ENSMUSG00000033983.15	novel	2607	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	144.505501625371	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	NA	False	NA	15	True	AATAAA	-17	NA	88864760	88882439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_88865029_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
ENSMUSG00000033985.18_116661199_116664747_1	chr4	+	1328	9	NIC	ENSMUSG00000033985.18	novel	2430	9	NA	NA	32239	1594	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGACTTCCGCTTCGTCTC	9677	False	NA	NA	False	NA	NA	NA	116661198	116664747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_116661334_116662005_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
ENSMUSG00000033985.18_116661199_116664747_2	chr4	+	1276	9	NNC	ENSMUSG00000033985.18	novel	2430	9	NA	NA	32239	1594	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	80	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGACTTCCGCTTCGTCTC	9677	False	NA	NA	False	NA	NA	NA	116661198	116664747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_116661334_116662057_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
ENSMUSG00000033987.17_117894306_117914837_1	chr11	-	1444	5	NIC	ENSMUSG00000033987.17	novel	14889	81	NA	NA	65183	18243	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	475	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGTCGCCCTGCAACTGCA	NA	False	NA	NA	False	NA	NA	NA	117914837	117894305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_117894346_117896195_117896718_117905399_117905549_117910432_117910559_117914230
ENSMUSG00000033991.10_76328544_76336702_1	chr13	+	629	5	NNC	ENSMUSG00000033991.10	novel	2116	5	NA	NA	0	559	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	99.1476172179645	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGGTTGTATTTAAAAAAC	NA	False	NA	NA	False	TATAAA	-19	NA	76328543	76336702	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_76328672_76330933_76331065_76333245_76333370_76335718_76335814_76336551
ENSMUSG00000033991.10_76328544_76336829_1	chr13	+	756	5	NNC	ENSMUSG00000033991.10	novel	2116	5	NA	NA	0	686	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	99.1476172179645	551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTATATTATTAGTAT	NA	False	NA	17	True	AATAAA	-18	NA	76328543	76336829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_76328672_76330933_76331065_76333245_76333370_76335718_76335814_76336551
ENSMUSG00000033991.10_76328544_76336829_2	chr13	+	720	5	FSM	ENSMUSG00000033991.10	ENSMUST00000223902.2	2116	5	0	1396	0	686	multi-exon	FALSE	canonical	0	0	junction_1	121.425903332032	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTATATTATTAGTAT	NA	False	NA	17	True	AATAAA	-18	NA	76328543	76336829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_76328636_76330933_76331065_76333245_76333370_76335718_76335814_76336551
ENSMUSG00000033991.10_76328544_76337285_1	chr13	+	1212	5	NNC	ENSMUSG00000033991.10	novel	2116	5	NA	NA	0	-940	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	99.1476172179645	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGAACTGTAACCTGTTT	NA	False	NA	NA	False	ATTAAA	-25	NA	76328543	76337285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_76328672_76330933_76331065_76333245_76333370_76335718_76335814_76336551
ENSMUSG00000033991.10_76328544_76337285_2	chr13	+	1176	5	FSM	ENSMUSG00000033991.10	ENSMUST00000223902.2	2116	5	0	940	0	-940	multi-exon	FALSE	canonical	0	0	junction_1	121.425903332032	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGAACTGTAACCTGTTT	NA	False	NA	NA	False	ATTAAA	-25	NA	76328543	76337285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_76328636_76330933_76331065_76333245_76333370_76335718_76335814_76336551
ENSMUSG00000033991.10_76328544_76338047_1	chr13	+	1938	5	FSM	ENSMUSG00000033991.10	ENSMUST00000223902.2	2116	5	0	178	0	-178	multi-exon	FALSE	canonical	0	0	junction_1	121.425903332032	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATACTCAGTATTTCATT	NA	False	NA	6	True	ATTAAA	-18	NA	76328543	76338047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_76328636_76330933_76331065_76333245_76333370_76335718_76335814_76336551
ENSMUSG00000033998.10_126722175_126757424_1	chr8	+	1969	3	FSM	ENSMUSG00000033998.10	ENSMUST00000046765.10	2235	3	266	0	0	0	multi-exon	FALSE	canonical	3	118	junction_2	9	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGGTTTATTACAACT	NA	False	NA	21	True	AATAAA	-18	NA	126722174	126757424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_126722554_126751750_126752147_126756230
ENSMUSG00000034006.18_80299521_80300703_1	chr18	+	805	2	ISM	ENSMUSG00000034006.18	ENSMUST00000134545.3	3258	4	-1	17663	0	-5997	5prime_fragment	FALSE	canonical	3	39	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGGCTCCCTTGACTTGC	NA	False	NA	NA	False	AATAAA	-15	NA	80299520	80300703	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_+_80299619_80299996
ENSMUSG00000034006.18_80330762_80335931_1	chr18	+	1284	2	NNC	ENSMUSG00000034006.18	novel	2080	8	NA	NA	24707	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTTCATGTGGTGTAAG	NA	False	NA	6	True	AATAAA	-39	NA	80330761	80335931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_80330905_80334790
ENSMUSG00000034023.17_113508665_113517235_1	chr6	+	1525	7	ISM	ENSMUSG00000034023.17	ENSMUST00000204827.3	4707	43	0	55999	0	1555	5prime_fragment	FALSE	canonical	3	301	junction_6	36.735163293801	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGCAATGCAA	NA	False	NA	NA	False	NA	NA	NA	113508664	113517235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221
ENSMUSG00000034023.17_113508665_113522281_1	chr6	+	954	9	ISM	ENSMUSG00000034023.17	ENSMUST00000204827.3	4707	43	0	50953	0	6601	5prime_fragment	FALSE	canonical	3	301	junction_6	34.8045884187703	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTCTCTGACTTCCATA	NA	False	NA	NA	False	NA	NA	NA	113508664	113522281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221_113516275_113519167_113519247_113521970
ENSMUSG00000034024.9_116886906_116892618_1	chr10	-	319	2	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	1111	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTTACTGATCTGT	4314	False	NA	-11	True	AATAAA	-19	NA	116892618	116886905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_116887184_116892577
ENSMUSG00000034024.9_116886906_116899682_1	chr10	-	1921	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-14	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_5	620.113430484026	9371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTTACTGATCTGT	NA	False	NA	-11	True	AATAAA	-19	NA	116899682	116886905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891136_116891940_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
ENSMUSG00000034042.17_116414855_116450942_1	chr4	+	3451	12	FSM	ENSMUSG00000034042.17	ENSMUST00000030460.15	3588	12	0	137	0	-137	multi-exon	FALSE	canonical	3	268	junction_2	28.7128847743677	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGTGGATTCTTTTTTTA	NA	False	NA	12	True	AATATA	-16	NA	116414854	116450942	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_116415026_116426360_116427379_116428067_116428181_116430590_116430721_116431533_116431812_116436443_116436517_116438446_116438641_116444567_116444709_116445775_116445941_116447362_116447488_116448425_116448529_116450002
ENSMUSG00000034064.15_38318695_38370584_1	chr16	-	2341	16	Fusion	ENSMUSG00000002846.10_ENSMUSG00000034064.15	novel	1573	7	NA	NA	0	14	multi-exon	FALSE	canonical	3	59	junction_6	371.529176362892	249	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCCTAATCATGCCTCAGT	6266	False	NA	-2	True	AGTAAA	-36	NA	38370584	38318694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
ENSMUSG00000034064.15_38345651_38370584_1	chr16	-	2570	11	FSM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	36	152	0	-149	multi-exon	FALSE	canonical	3	749	junction_10	82.4351866620074	910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGGCTCTGACTCTTGCCT	6266	False	NA	-11	True	TTTAAA	-15	NA	38370584	38345650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
ENSMUSG00000034064.15_38345651_38370584_2	chr16	-	2773	11	FSM	ENSMUSG00000034064.15	ENSMUST00000153187.8	2922	11	0	149	0	-149	multi-exon	FALSE	canonical	3	209	junction_10	237.918389369128	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGGCTCTGACTCTTGCCT	6266	False	NA	-11	True	TTTAAA	-15	NA	38370584	38345650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
ENSMUSG00000034064.15_38346592_38370584_1	chr16	-	1629	11	FSM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	36	1093	0	-1090	multi-exon	FALSE	canonical	3	749	junction_10	82.4351866620074	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAGGTTTGATTCTGTTG	6266	False	NA	NA	False	AATACA	-19	NA	38370584	38346591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
ENSMUSG00000034075.11_84508746_84518409_1	chr2	-	1909	5	Fusion	ENSMUSG00000050043.17_ENSMUSG00000034075.11	novel	2282	9	NA	NA	-8925	-2296	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1864	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATTGGACAGTACTTTC	NA	False	NA	NA	False	NA	NA	NA	84518409	84508745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_-_84509006_84515534_84515792_84515946_84516044_84516534_84516630_84517209
ENSMUSG00000034075.11_84518485_84520242_1	chr2	-	1353	2	ISM	ENSMUSG00000034075.11	ENSMUST00000035840.6	4706	12	25282	171	24788	-171	3prime_fragment	FALSE	canonical	3	304	junction_1	0	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTCCCCCCTGACTTGTG	NA	False	NA	-6	True	AATAAA	-17	NA	84520242	84518484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_84519789_84520193
ENSMUSG00000034083.17_91855056_91876576_1	chr6	+	1482	11	FSM	ENSMUSG00000034083.17	ENSMUST00000037783.7	1752	11	22	248	0	-248	multi-exon	FALSE	canonical	3	160	junction_7	17.7876361554873	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGCTGGTTGTATTTGTC	NA	False	NA	11	True	TATAAA	-21	NA	91855055	91876576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_91855168_91857237_91857343_91858227_91858329_91862328_91862388_91865050_91865232_91867774_91867871_91869836_91869980_91870386_91870482_91872194_91872328_91875127_91875281_91876272
ENSMUSG00000034088.16_93335484_93341275_1	chr1	-	1137	6	ISM	ENSMUSG00000034088.16	ENSMUST00000186164.7	3808	25	27239	-240	27239	0	3prime_fragment	FALSE	canonical	3	528	junction_5	58.8340037733282	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTGCCCTCTTCCTTTCC	2236	False	NA	NA	False	AATAAA	-27	NA	93341275	93335483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212
ENSMUSG00000034088.16_93335484_93406537_1	chr1	-	4423	28	FSM	ENSMUSG00000034088.16	ENSMUST00000170883.8	6231	28	-14	1822	0	0	multi-exon	FALSE	canonical	3	431	junction_27	59.547263104276	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTGCCCTCTTCCTTTCC	NA	False	NA	NA	False	AATAAA	-27	NA	93406537	93335483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93406434
ENSMUSG00000034108.7_4875394_4889326_1	chr19	-	656	5	NIC	ENSMUSG00000034108.7	novel	1067	8	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	1	10	junction_3	254.264011413334	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889326	4875393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_4875693_4875797_4875902_4875971_4876050_4888858_4888932_4889224
ENSMUSG00000034108.7_4875394_4889326_2	chr19	-	1027	8	NNC	ENSMUSG00000034108.7	novel	1067	8	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	209.585596950219	2650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889326	4875393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_4875693_4875797_4875902_4875971_4876040_4882856_4882922_4883368_4883547_4884200_4884339_4888858_4888932_4889224
ENSMUSG00000034108.7_4875394_4889326_3	chr19	-	962	8	NIC	ENSMUSG00000034108.7	novel	1067	8	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_5	206.828727330078	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889326	4875393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883476_4884200_4884339_4888858_4888932_4889224
ENSMUSG00000034108.7_4875394_4889326_4	chr19	-	1103	7	NIC	ENSMUSG00000034108.7	novel	1067	8	NA	NA	-11	0	intron_retention	FALSE	canonical	3	527	junction_4	32.5729949498047	3256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889326	4875393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_4875693_4875797_4876050_4882860_4882922_4883368_4883547_4884200_4884339_4888858_4888932_4889224
ENSMUSG00000034108.7_4875394_4889326_5	chr19	-	1039	8	NNC	ENSMUSG00000034108.7	novel	1067	8	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	207.066488385361	4880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889326	4875393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884200_4884339_4888852_4888932_4889224
ENSMUSG00000034108.7_4875394_4889326_6	chr19	-	1027	8	NNC	ENSMUSG00000034108.7	novel	1067	8	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	207.628003301823	4046	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889326	4875393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883374_4883547_4884200_4884339_4888858_4888932_4889224
ENSMUSG00000034108.7_4875394_4889326_7	chr19	-	727	6	NIC	ENSMUSG00000034108.7	novel	870	8	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	1	9	junction_3	238.143990056436	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889326	4875393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_4875693_4875797_4875902_4875971_4876050_4884267_4884339_4888858_4888932_4889224
ENSMUSG00000034117.4_10919752_10926617_1	chr19	+	2083	4	NIC	ENSMUSG00000034117.4	novel	2644	3	NA	NA	5228	6742	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	640	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTTCGGAACTGTCGGCG	NA	False	NA	NA	False	NA	NA	NA	10919751	10926617	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_10920654_10920841_10920917_10922646_10922777_10925641
ENSMUSG00000034118.16_130143351_130164570_1	chr5	+	770	4	ISM	ENSMUSG00000034118.16	ENSMUST00000040721.9	2050	6	35140	0	-19447	0	3prime_fragment	FALSE	canonical	3	153	junction_2	7.76029781788188	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAATGGTCCCGTTTTCAG	NA	False	NA	17	True	AATAAA	-18	NA	130143350	130164570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_130143508_130158348_130158400_130163299_130163340_130164048
ENSMUSG00000034120.19_116740730_116742912_1	chr11	-	1124	2	ISM	ENSMUSG00000034120.19	ENSMUST00000092404.13	1899	3	1008	3	0	0	3prime_fragment	FALSE	canonical	3	1858	junction_1	0	1166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGTGTCCTGGTCTTTTG	7011	False	NA	-8	True	ATTAAA	-28	NA	116742912	116740729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_116741788_116742846
ENSMUSG00000034120.19_116740730_116743045_2	chr11	-	1257	2	ISM	ENSMUSG00000034120.19	ENSMUST00000092404.13	1899	3	875	3	0	0	3prime_fragment	FALSE	canonical	3	1858	junction_1	0	1188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGTGTCCTGGTCTTTTG	6878	False	NA	-8	True	ATTAAA	-28	NA	116743045	116740729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_116741788_116742846
ENSMUSG00000034121.13_87747634_87754629_1	chr11	+	1949	13	ISM	ENSMUSG00000034121.13	ENSMUST00000038196.7	2499	18	3593	0	245	0	3prime_fragment	FALSE	canonical	3	152	junction_5	15.9850190282443	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	2434	False	NA	18	True	TATAAA	-20	NA	87747633	87754629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
ENSMUSG00000034126.6_87194492_87206729_1	chr12	-	563	4	NIC	ENSMUSG00000034126.6	novel	3855	9	NA	NA	-11987	-22605	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCGCCCCCGCCCCCTGA	NA	False	NA	NA	False	NA	NA	NA	87206729	87194491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_87194619_87204666_87204719_87205851_87205920_87206413
ENSMUSG00000034126.6_87194546_87211497_1	chr12	-	1602	9	NIC	ENSMUSG00000034126.6	novel	3855	9	NA	NA	-16755	-22659	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	715	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCGGGGTCCAGAGAGCGA	NA	False	NA	NA	False	AAGAAA	-34	NA	87211497	87194545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
ENSMUSG00000034135.16_46105549_46114185_1	chr9	+	1672	8	ISM	ENSMUSG00000034135.16	ENSMUST00000153152.2	5465	21	38872	21301	-25320	2	internal_fragment	FALSE	canonical	3	79	junction_3	8.83869045614744	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCGGGGAAACTGTGGGTG	NA	False	NA	8	True	AATAAA	-16	NA	46105548	46114185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_46105580_46106117_46106229_46106463_46106608_46107090_46107169_46107281_46107392_46109444_46109599_46109849_46110006_46113297
ENSMUSG00000034160.14_100683670_100696500_1	chrX	+	1302	5	ISM	ENSMUSG00000034160.14	ENSMUST00000119299.8	3840	23	4	30046	0	0	5prime_fragment	FALSE	canonical	3	98	junction_1	113.781589020368	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGAAGGACAAAGCTGGT	NA	False	NA	NA	False	TTTAAA	-13	NA	100683669	100696500	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_100683717_100683823_100683929_100686611_100686763_100687552_100687797_100695745
ENSMUSG00000034160.14_100683670_100696500_2	chrX	+	1439	4	FSM	ENSMUSG00000034160.14	ENSMUST00000150161.8	3087	4	-44	1692	0	0	multi-exon	FALSE	canonical	3	215	junction_1	65.0743164901996	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGAAGGACAAAGCTGGT	NA	False	NA	NA	False	TTTAAA	-13	NA	100683669	100696500	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_100683929_100686581_100686763_100687552_100687797_100695745
ENSMUSG00000034164.18_5056265_5060778_1	chr11	-	794	2	ISM	ENSMUSG00000034164.18	ENSMUST00000163299.8	1923	15	41462	-1	18285	0	3prime_fragment	FALSE	canonical	3	12	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCGCTTGGTCTCTATGTG	4524	False	NA	NA	False	AATAAA	-19	NA	5060778	5056264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_5056970_5060689
ENSMUSG00000034165.17_47904454_47910019_1	chr17	+	1323	5	FSM	ENSMUSG00000034165.17	ENSMUST00000182209.8	1977	5	59	595	0	0	multi-exon	FALSE	canonical	3	3602	junction_2	267.432701814868	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCAACCTTCTCAGTT	NA	False	NA	NA	False	NA	NA	NA	47904453	47910019	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ENSMUSG00000034165.17_47905238_47910614_1	chr17	+	1687	5	NIC	ENSMUSG00000034165.17	novel	385	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_1	1687.74514885986	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47905237	47910614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_47905331_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ENSMUSG00000034165.17_47908089_47910614_1	chr17	+	1451	4	NIC	ENSMUSG00000034165.17	novel	336	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	139	junction_1	1894.33911078948	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47908088	47910614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_47908162_47908344_47908505_47908927_47909065_47909533
ENSMUSG00000034165.17_47908089_47910614_2	chr17	+	1392	4	NNC	ENSMUSG00000034165.17	novel	336	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	143	junction_1	1892.45349275014	241	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47908088	47910614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_47908103_47908344_47908505_47908927_47909065_47909533
ENSMUSG00000034171.14_115854987_115874903_1	chr4	-	2486	15	FSM	ENSMUSG00000034171.14	ENSMUST00000049095.6	3827	15	220	1121	-9	403	multi-exon	FALSE	canonical	3	38	junction_1	8.32257809350258	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGCTGGCTGGGATATC	NA	False	NA	NA	False	NA	NA	NA	115874903	115854986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_115855813_115856017_115856164_115856695_115856805_115857245_115857286_115857983_115858025_115858300_115858401_115859654_115859753_115860173_115860300_115861551_115861677_115861910_115861952_115862196_115862404_115862497_115862632_115862783_115862919_115865376_115865491_115874659
ENSMUSG00000034175.14_5019689_5049067_2	chr11	+	2354	16	NIC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	-29237	-1440	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	6723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCCCCTAGGCGCCGCAC	6998	False	NA	NA	False	NA	NA	NA	5019688	5049067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ENSMUSG00000034175.14_5019897_5049067_2	chr11	+	2146	16	NIC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	-29029	-1440	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	971	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCCCCTAGGCGCCGCAC	7206	False	NA	NA	False	NA	NA	NA	5019896	5049067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ENSMUSG00000034175.14_5049273_5056093_1	chr11	+	1899	9	NIC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	72.0831767821036	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTCCTGAGTGTCAG	NA	False	NA	18	True	AATAAA	-19	NA	5049272	5056093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_5049478_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ENSMUSG00000034175.14_5049433_5056093_1	chr11	+	1840	9	NIC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_2	65.8649185834159	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTCCTGAGTGTCAG	NA	False	NA	18	True	AATAAA	-19	NA	5049432	5056093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_5049567_5049747_5049899_5050384_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ENSMUSG00000034175.14_5049433_5056093_2	chr11	+	1739	9	NIC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	72.0831767821036	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTCCTGAGTGTCAG	NA	False	NA	18	True	AATAAA	-19	NA	5049432	5056093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_5049478_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ENSMUSG00000034175.14_5049433_5056093_3	chr11	+	1828	9	FSM	ENSMUSG00000034175.14	ENSMUST00000101610.10	2333	9	507	-2	0	0	multi-exon	FALSE	canonical	3	72	junction_2	51.4605431374369	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTCCTGAGTGTCAG	NA	False	NA	18	True	AATAAA	-19	NA	5049432	5056093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ENSMUSG00000034175.14_5049608_5056093_1	chr11	+	1834	8	ISM	ENSMUSG00000034175.14	ENSMUST00000101610.10	2333	9	682	-2	0	0	3prime_fragment	FALSE	canonical	3	72	junction_1	52.1641835056998	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTCCTGAGTGTCAG	NA	False	NA	18	True	AATAAA	-19	NA	5049607	5056093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ENSMUSG00000034187.19_103773411_103844850_1	chr11	-	1145	9	FSM	ENSMUSG00000034187.19	ENSMUST00000145126.8	3212	9	0	2067	0	-2067	multi-exon	FALSE	canonical	3	278	junction_2	26.9973957077345	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCTGGAGCAGTAGCTC	NA	False	NA	NA	False	AATAAA	-18	NA	103844850	103773410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
ENSMUSG00000034190.10_69955438_69969990_1	chr14	-	1667	10	FSM	ENSMUSG00000034190.10	ENSMUST00000036381.10	2649	10	-7	989	0	-989	multi-exon	FALSE	canonical	3	245	junction_7	17.0583602471336	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGTCGTCTTCATAGCCTG	NA	False	NA	NA	False	NA	NA	NA	69969990	69955437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_69955750_69955963_69956147_69956577_69956639_69956847_69956947_69957196_69957317_69957560_69957610_69958376_69958511_69958655_69958842_69967571_69967744_69969639
ENSMUSG00000034192.6_91493029_91499607_1	chr6	+	618	4	NNC	ENSMUSG00000034192.6	novel	743	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	18	junction_1	1022.6176650581	19286	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTTTTTAATGTGTCT	NA	False	NA	47	True	ATTAAA	-23	NA	91493028	91499607	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_91493061_91494035_91494141_91496530_91496627_91499222
ENSMUSG00000034203.9_91441258_91450431_1	chr6	-	1271	3	FSM	ENSMUSG00000034203.9	ENSMUST00000040835.9	3472	3	97	2104	0	-2104	multi-exon	FALSE	canonical	3	1002	junction_1	28.5	7684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATGGCTTTTTTTTC	NA	False	NA	-1	True	ATTAAA	-21	NA	91450431	91441257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_91442296_91444664_91444764_91450297
ENSMUSG00000034203.9_91441604_91450431_1	chr6	-	925	3	FSM	ENSMUSG00000034203.9	ENSMUST00000040835.9	3472	3	97	2450	0	-2450	multi-exon	FALSE	canonical	3	1002	junction_1	28.5	1454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAAGAGTGGGTCCATTC	NA	False	NA	-4	True	AGTAAA	-16	NA	91450431	91441603	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_91442296_91444664_91444764_91450297
ENSMUSG00000034203.9_91441804_91450431_1	chr6	-	725	3	FSM	ENSMUSG00000034203.9	ENSMUST00000040835.9	3472	3	97	2650	0	-2650	multi-exon	FALSE	canonical	3	1002	junction_1	28.5	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCACTCCTGGATGTACTA	NA	False	NA	NA	False	CATAAA	-18	NA	91450431	91441803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_91442296_91444664_91444764_91450297
ENSMUSG00000034206.16_36832148_36837953_1	chr16	+	978	4	ISM	ENSMUSG00000034206.16	ENSMUST00000071452.12	7290	25	0	77401	0	1	5prime_fragment	FALSE	canonical	3	20	junction_3	9.03081145609604	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTATTTATTTGTTTA	3748	False	NA	NA	False	ATTAAA	-17	NA	36832147	36837953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_36832422_36833468_36833649_36835440_36835572_36837560
ENSMUSG00000034206.16_36832148_36837953_2	chr16	+	956	6	NNC	ENSMUSG00000034206.16	novel	7386	26	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_5	12.2474487139159	82	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTATTTATTTGTTTA	3748	False	NA	NA	False	ATTAAA	-17	NA	36832147	36837953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_36832422_36833468_36833649_36835440_36835572_36836674_36836771_36837560_36837718_36837835
ENSMUSG00000034209.5_5008024_5010385_1	chr11	+	1214	3	FSM	ENSMUSG00000034209.5	ENSMUST00000037218.2	1110	3	-104	0	-104	0	multi-exon	FALSE	canonical	3	9	junction_2	0.5	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTAAGGGTTTCTTGTTC	NA	False	NA	NA	False	AATAAA	-27	NA	5008023	5010385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_5008525_5009432_5009558_5009797
ENSMUSG00000034211.15_129792598_129795354_1	chr5	+	611	4	FSM	ENSMUSG00000034211.15	ENSMUST00000042191.12	832	4	31	190	0	0	multi-exon	FALSE	canonical	3	460	junction_1	196.309845793724	1914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGATTCTCTGAACTGAA	791	False	NA	39	True	AGTAAA	-34	NA	129792597	129795354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129792614_129792747_129792828_129793790_129793931_129794979
ENSMUSG00000034211.15_129792598_129795354_2	chr5	+	758	4	FSM	ENSMUSG00000034211.15	ENSMUST00000119576.8	5061	4	37	4266	0	0	multi-exon	FALSE	canonical	3	150	junction_2	308.575220435256	799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGATTCTCTGAACTGAA	791	False	NA	39	True	AGTAAA	-34	NA	129792597	129795354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129792614_129792747_129792975_129793790_129793931_129794979
ENSMUSG00000034211.15_129792598_129795354_3	chr5	+	706	4	FSM	ENSMUSG00000034211.15	ENSMUST00000118420.8	843	4	30	107	0	0	multi-exon	FALSE	canonical	3	33	junction_2	354.785381134379	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGATTCTCTGAACTGAA	791	False	NA	39	True	AGTAAA	-34	NA	129792597	129795354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129792614_129792747_129792923_129793790_129793931_129794979
ENSMUSG00000034211.15_129792598_129795354_4	chr5	+	642	4	NNC	ENSMUSG00000034211.15	novel	5061	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	357.630473471649	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGATTCTCTGAACTGAA	791	False	NA	39	True	AGTAAA	-34	NA	129792597	129795354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129792614_129792747_129792859_129793790_129793931_129794979
ENSMUSG00000034211.15_129792598_129795545_1	chr5	+	949	4	FSM	ENSMUSG00000034211.15	ENSMUST00000119576.8	5061	4	37	4075	0	1	multi-exon	FALSE	canonical	3	150	junction_2	308.575220435256	1862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGCAGCTTGATTTTT	791	False	NA	24	True	CATAAA	-13	NA	129792597	129795545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129792614_129792747_129792975_129793790_129793931_129794979
ENSMUSG00000034211.15_129792598_129795545_2	chr5	+	833	4	NNC	ENSMUSG00000034211.15	novel	5061	4	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	357.630473471649	1817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGCAGCTTGATTTTT	791	False	NA	24	True	CATAAA	-13	NA	129792597	129795545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_129792614_129792747_129792859_129793790_129793931_129794979
ENSMUSG00000034211.15_129792598_129795758_1	chr5	+	1015	4	FSM	ENSMUSG00000034211.15	ENSMUST00000042191.12	832	4	31	-214	0	3	multi-exon	FALSE	canonical	3	460	junction_1	196.309845793724	3684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCCTGTTTTGTTGTGTT	791	False	NA	NA	False	AGTAAA	-1	NA	129792597	129795758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129792614_129792747_129792828_129793790_129793931_129794979
ENSMUSG00000034218.17_53429782_53448040_1	chr9	-	1461	9	ISM	ENSMUSG00000034218.17	ENSMUST00000232179.2	9787	64	0	79114	0	3365	5prime_fragment	FALSE	canonical	3	33	junction_1	29.3428015022424	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTGTCATTTCAATCAT	NA	False	NA	NA	False	NA	NA	NA	53448040	53429781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_53429970_53431291_53431456_53433347_53433587_53435646_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
ENSMUSG00000034218.17_53429882_53447976_1	chr9	-	1297	9	ISM	ENSMUSG00000034218.17	ENSMUST00000232179.2	9787	64	64	79214	-3	3265	5prime_fragment	FALSE	canonical	3	33	junction_1	29.3428015022424	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGAAAATAGACGTAGGC	NA	False	NA	NA	False	NA	NA	NA	53447976	53429881	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_53429970_53431291_53431456_53433347_53433587_53435646_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
ENSMUSG00000034218.17_53435364_53448040_1	chr9	-	1153	6	ISM	ENSMUSG00000034218.17	ENSMUST00000132403.2	1243	7	-67	2217	0	-2217	5prime_fragment	FALSE	canonical	3	46	junction_1	21.0770016843004	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACCCTTAAAACAGACCAA	NA	False	NA	NA	False	ATTAAA	-15	NA	53448040	53435363	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
ENSMUSG00000034218.17_53435439_53447976_1	chr9	-	1014	6	ISM	ENSMUSG00000034218.17	ENSMUST00000132403.2	1243	7	-3	2292	-3	-2292	5prime_fragment	FALSE	canonical	3	46	junction_1	21.0770016843004	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTCATTGTGATATTTCA	NA	False	NA	NA	False	AATACA	-17	NA	53447976	53435438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
ENSMUSG00000034226.8_119099682_119108469_1	chr2	-	1729	4	NNC	ENSMUSG00000034226.8	novel	1703	3	NA	NA	-6716	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_3	7.54247233265651	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTGGTCTCCT	4289	False	NA	-5	True	AATAAA	-17	NA	119108469	119099681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_119100969_119101162_119101222_119101396_119101722_119108411
ENSMUSG00000034243.18_36695530_36709767_1	chr16	+	721	6	ISM	ENSMUSG00000034243.18	ENSMUST00000114812.9	11001	22	0	43680	0	4	5prime_fragment	TRUE	canonical	3	20	junction_2	8.99777750336159	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAGAAAAAATAAAACATGAA	1477	False	NA	NA	False	NA	NA	NA	36695529	36709767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_36695626_36705372_36705551_36706492_36706591_36707600_36707766_36707918_36708069_36709733
ENSMUSG00000034252.15_80049544_80051453_1	chr9	+	656	2	ISM	ENSMUSG00000034252.15	ENSMUST00000176563.2	614	3	217	-166	217	0	3prime_fragment	FALSE	canonical	3	376	junction_1	0	252	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTAATTTGATATTCTTT	NA	False	NA	7	True	AATAAA	-18	NA	80049543	80051453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_80049678_80050931
ENSMUSG00000034259.9_76211665_76213960_1	chr15	+	793	3	NNC	ENSMUSG00000034259.9	novel	1728	3	NA	NA	0	665	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	330.5	2243	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACACCTTACTGTACAGCA	947	False	NA	13	True	AATAAA	-19	NA	76211664	76213960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_76211846_76213229_76213437_76213555
ENSMUSG00000034259.9_76211665_76213960_2	chr15	+	934	2	ISM	ENSMUSG00000034259.9	ENSMUST00000230512.2	1728	3	0	913	0	665	intron_retention	FALSE	canonical	3	25	junction_1	0	782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACACCTTACTGTACAGCA	947	False	NA	13	True	AATAAA	-19	NA	76211664	76213960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_76211868_76213229
ENSMUSG00000034259.9_76211665_76213960_3	chr15	+	810	3	NNC	ENSMUSG00000034259.9	novel	1728	3	NA	NA	0	665	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	330.5	3211	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACACCTTACTGTACAGCA	947	False	NA	13	True	AATAAA	-19	NA	76211664	76213960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_76211868_76213234_76213437_76213555
ENSMUSG00000034263.14_64885438_64893990_1	chr9	+	1295	5	ISM	ENSMUSG00000034263.14	ENSMUST00000037504.7	2837	13	17219	0	16467	0	3prime_fragment	TRUE	canonical	3	229	junction_3	10.0623058987491	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGACTCCTAAGAAGCAAT	NA	False	NA	NA	False	AATATA	-18	NA	64885437	64893990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_64885564_64887056_64887191_64889270_64889390_64891259_64891326_64893140
ENSMUSG00000034274.12_4845343_4878865_1	chr11	+	468	5	NNC	ENSMUSG00000034274.12	novel	2235	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	116.645563567587	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTGTTTGTAGCTCCTT	NA	False	NA	21	True	ATTAAA	-18	NA	4845342	4878865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_4845379_4849790_4849907_4851151_4851296_4852085_4852200_4878807
ENSMUSG00000034278.4_119002981_119039276_1	chr2	-	983	10	NNC	ENSMUSG00000034278.4	novel	1008	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	103.778372589302	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTACTTTTCTTCCTCTTG	NA	False	NA	-4	True	AATAAA	-15	NA	119039276	119002980	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_119003167_119009832_119009944_119010365_119010447_119010967_119011046_119014060_119014177_119014397_119014484_119016176_119016265_119016509_119016569_119016826_119016897_119039168
ENSMUSG00000034285.16_4823999_4843654_1	chr11	+	1337	10	NNC	ENSMUSG00000034285.16	novel	1566	11	NA	NA	0	37	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	404.414559335429	1465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGAAGTCGTGACAGTCA	NA	False	NA	NA	False	AATAAA	-25	NA	4823998	4843654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834122_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
ENSMUSG00000034285.16_4823999_4843654_2	chr11	+	1478	9	NIC	ENSMUSG00000034285.16	novel	1566	11	NA	NA	0	37	intron_retention	FALSE	canonical	3	1103	junction_5	71.9790551132758	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGAAGTCGTGACAGTCA	NA	False	NA	NA	False	AATAAA	-25	NA	4823998	4843654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
ENSMUSG00000034285.16_4823999_4843654_3	chr11	+	1261	9	NIC	ENSMUSG00000034285.16	novel	1566	11	NA	NA	0	37	combination_of_known_junctions	FALSE	canonical	3	46	junction_4	409.499065169873	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGAAGTCGTGACAGTCA	NA	False	NA	NA	False	AATAAA	-25	NA	4823998	4843654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
ENSMUSG00000034285.16_4823999_4843654_5	chr11	+	1327	10	NNC	ENSMUSG00000034285.16	novel	1566	11	NA	NA	0	37	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	406.149063434098	1165	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGAAGTCGTGACAGTCA	NA	False	NA	NA	False	AATAAA	-25	NA	4823998	4843654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_4824099_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
ENSMUSG00000034285.16_4823999_4844201_1	chr11	+	1808	9	NIC	ENSMUSG00000034285.16	novel	1566	11	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	46	junction_4	409.499065169873	2508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGTGGTGTTGTCTTCAT	NA	False	NA	12	True	ATTAAA	-12	NA	4823998	4844201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
ENSMUSG00000034285.16_4823999_4844201_3	chr11	+	1874	10	NNC	ENSMUSG00000034285.16	novel	1566	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	406.149063434098	3436	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGTGGTGTTGTCTTCAT	NA	False	NA	12	True	ATTAAA	-12	NA	4823998	4844201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_4824099_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
ENSMUSG00000034285.16_4823999_4844201_4	chr11	+	1884	10	NNC	ENSMUSG00000034285.16	novel	1566	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	404.414559335429	3708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGTGGTGTTGTCTTCAT	NA	False	NA	12	True	ATTAAA	-12	NA	4823998	4844201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834122_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
ENSMUSG00000034311.4_99666492_99669541_1	chrX	+	993	7	NIC	ENSMUSG00000034311.4	novel	4983	30	NA	NA	-2851	-10372	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGATGCTCCTACCACCCT	NA	False	NA	NA	False	NA	NA	NA	99666491	99669541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669491
ENSMUSG00000034311.4_99666492_99669541_2	chrX	+	1063	7	NIC	ENSMUSG00000034311.4	novel	4983	30	NA	NA	-2851	-10372	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGATGCTCCTACCACCCT	NA	False	NA	NA	False	NA	NA	NA	99666491	99669541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669421
ENSMUSG00000034311.4_99669715_99682040_1	chrX	+	1030	5	ISM	ENSMUSG00000034311.4	ENSMUST00000048962.4	4983	30	372	88780	372	2127	5prime_fragment	FALSE	canonical	3	223	junction_2	17.2825779327044	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAGAAGAATGACAAGTAA	NA	False	NA	NA	False	NA	NA	NA	99669714	99682040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_99670195_99670309_99670425_99677444_99677636_99679289_99679383_99681889
ENSMUSG00000034321.15_41911421_41921742_1	chr19	-	1609	8	FSM	ENSMUSG00000034321.15	ENSMUST00000075280.12	1018	8	-7	-584	-5	584	multi-exon	FALSE	canonical	3	822	junction_7	62.4257926808842	2722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTATGTTTAGTGAAAAC	NA	False	NA	-15	True	AATAAA	-15	NA	41921742	41911420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921487_41921604_41921690
ENSMUSG00000034321.15_41912005_41921742_1	chr19	-	1020	8	NNC	ENSMUSG00000034321.15	novel	1018	8	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	103	junction_4	292.949253807076	2357	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTGGAAAAAATTCTTT	NA	False	NA	-33	True	TATAAA	-22	NA	41921742	41912004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915000_41916463_41916553_41919794_41919870_41921487_41921604_41921690
ENSMUSG00000034321.15_41912005_41921742_2	chr19	-	936	7	NIC	ENSMUSG00000034321.15	novel	1018	8	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_4	328.565569305935	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTGGAAAAAATTCTTT	NA	False	NA	-33	True	TATAAA	-22	NA	41921742	41912004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41919794_41919870_41921487_41921604_41921690
ENSMUSG00000034321.15_41912005_41921742_3	chr19	-	1064	8	NNC	ENSMUSG00000034321.15	novel	1018	8	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_6	317.627107772364	2027	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTGGAAAAAATTCTTT	NA	False	NA	-33	True	TATAAA	-22	NA	41921742	41912004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921448_41921604_41921690
ENSMUSG00000034321.15_41912005_41921742_4	chr19	-	1112	7	ISM	ENSMUSG00000034321.15	ENSMUST00000075280.12	1018	8	-7	0	-5	0	intron_retention	FALSE	canonical	3	831	junction_4	54.234060638434	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTGGAAAAAATTCTTT	NA	False	NA	-33	True	TATAAA	-22	NA	41921742	41912004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921487
ENSMUSG00000034329.17_86085671_86092019_1	chr11	-	643	4	NIC	ENSMUSG00000034329.17	novel	507	5	NA	NA	0	188	combination_of_known_splicesites	FALSE	canonical	1	5	junction_1	45.365184888855	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTCTGATCTGTCCGTT	NA	False	NA	NA	False	AATAAA	-21	NA	86092019	86085670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_86085994_86088694_86088807_86089697_86089821_86091934
ENSMUSG00000034341.18_115973751_115977798_1	chr11	-	1129	2	FSM	ENSMUSG00000034341.18	ENSMUST00000129532.2	958	2	0	-171	0	171	multi-exon	FALSE	canonical	3	1218	junction_1	0	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	115977798	115973750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115974774_115977692
ENSMUSG00000034343.15_91178041_91190150_1	chr1	+	415	3	ISM	ENSMUSG00000034343.15	ENSMUST00000178627.8	1363	10	0	23597	0	-2809	5prime_fragment	FALSE	canonical	3	280	junction_1	31	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGAGGCATTTTGGTTTTT	319	False	NA	NA	False	AATAAA	-17	NA	91178040	91190150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_91178160_91181981_91182116_91189988
ENSMUSG00000034343.15_91178059_91213290_1	chr1	+	888	10	FSM	ENSMUSG00000034343.15	ENSMUST00000178627.8	1363	10	18	457	0	-172	multi-exon	FALSE	canonical	3	274	junction_9	29.8142396999972	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTTGTCTGCTTCCCTT	337	False	NA	NA	False	AATACA	-26	NA	91178058	91213290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_91178160_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ENSMUSG00000034343.15_91178059_91213290_2	chr1	+	933	10	FSM	ENSMUSG00000034343.15	ENSMUST00000191368.7	1110	10	-28	205	0	-172	multi-exon	FALSE	canonical	3	40	junction_1	94.7511360236793	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTTGTCTGCTTCCCTT	337	False	NA	NA	False	AATACA	-26	NA	91178058	91213290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_91178160_91181936_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ENSMUSG00000034343.15_91178059_91213496_1	chr1	+	1094	10	FSM	ENSMUSG00000034343.15	ENSMUST00000178627.8	1363	10	18	251	0	1	multi-exon	FALSE	canonical	3	274	junction_9	29.8142396999972	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATGCACACTCTCTTAG	337	False	NA	NA	False	TATAAA	-7	NA	91178058	91213496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_91178160_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ENSMUSG00000034343.15_91178059_91213649_2	chr1	+	1292	10	FSM	ENSMUSG00000034343.15	ENSMUST00000191368.7	1110	10	-28	-154	0	0	multi-exon	FALSE	canonical	3	40	junction_1	94.7511360236793	1591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATGCTTTAATTATTTT	337	False	NA	NA	False	NA	NA	NA	91178058	91213649	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_91178160_91181936_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ENSMUSG00000034343.15_91178059_91213649_3	chr1	+	1247	10	FSM	ENSMUSG00000034343.15	ENSMUST00000178627.8	1363	10	18	98	0	0	multi-exon	FALSE	canonical	3	274	junction_9	29.8142396999972	1977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATGCTTTAATTATTTT	337	False	NA	NA	False	NA	NA	NA	91178058	91213649	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_91178160_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ENSMUSG00000034343.15_91178059_91213649_4	chr1	+	1230	9	NNC	ENSMUSG00000034343.15	novel	1363	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	112.385427769796	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATGCTTTAATTATTTT	337	False	NA	NA	False	NA	NA	NA	91178058	91213649	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_91178160_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91211652_91211732_91213026
ENSMUSG00000034345.15_6130112_6135109_1	chr17	+	511	3	FSM	ENSMUSG00000034345.15	ENSMUST00000039487.10	2245	3	51	1683	0	-298	multi-exon	FALSE	canonical	3	932	junction_1	74.5	4007	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTTTAGCTGCAATTTGG	1741	False	NA	31	True	ATTAAA	-21	NA	6130111	6135109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_6130187_6131076_6131150_6134746
ENSMUSG00000034345.15_6130112_6135407_1	chr17	+	809	3	FSM	ENSMUSG00000034345.15	ENSMUST00000039487.10	2245	3	51	1385	0	0	multi-exon	FALSE	canonical	3	932	junction_1	74.5	7050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCTTTTACCCTGGGTAT	1741	False	NA	29	True	ATTAAA	-33	NA	6130111	6135407	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_6130187_6131076_6131150_6134746
ENSMUSG00000034345.15_6130112_6135763_1	chr17	+	1165	3	FSM	ENSMUSG00000034345.15	ENSMUST00000039487.10	2245	3	51	1029	0	356	multi-exon	FALSE	canonical	3	932	junction_1	74.5	7151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGCAAGGTCAGCCTCCA	1741	False	NA	NA	False	TATAAA	-15	NA	6130111	6135763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_6130187_6131076_6131150_6134746
ENSMUSG00000034349.15_68912324_68928733_1	chr3	+	1536	10	ISM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	253	13223	0	0	5prime_fragment	FALSE	canonical	3	521	junction_3	56.5844719789431	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGAGTGTGTCAGTGATG	NA	False	NA	NA	False	AAGAAA	-6	NA	68912323	68928733	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568
ENSMUSG00000034349.15_68912324_68941956_1	chr3	+	4063	24	FSM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	253	0	0	0	multi-exon	FALSE	canonical	3	521	junction_3	142.05353233605	924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTTTCCTGTTTTAT	NA	False	NA	20	True	TATAAA	-21	NA	68912323	68941956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
ENSMUSG00000034371.10_10582951_10607186_1	chr19	-	4202	27	NIC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-24168	-6555	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	2751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGACACGTTGCAGGCCA	NA	False	NA	NA	False	NA	NA	NA	10607186	10582950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
ENSMUSG00000034379.10_35859291_35891904_1	chr16	+	664	6	Genic_Genomic	ENSMUSG00000034379.10	novel	2739	1	NA	NA	-2269	27606	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7805	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCGGCCGCGGCGCTGGC	2109	False	NA	NA	False	NA	NA	NA	35859290	35891904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_35859306_35864218_35864462_35866748_35866858_35870211_35870321_35872655_35872779_35891839
ENSMUSG00000034379.10_35864216_35891904_1	chr16	+	529	4	Genic_Genomic	ENSMUSG00000034379.10	novel	2739	1	NA	NA	2656	27606	multi-exon	FALSE	non_canonical	0	0	junction_1	0	135	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCGGCCGCGGCGCTGGC	7034	False	NA	NA	False	NA	NA	NA	35864215	35891904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_35864462_35866748_35866858_35870211_35870321_35891839
ENSMUSG00000034379.10_35864216_35891904_2	chr16	+	647	5	Genic_Genomic	ENSMUSG00000034379.10	novel	2739	1	NA	NA	2656	27606	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4899	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCGGCCGCGGCGCTGGC	7034	False	NA	NA	False	NA	NA	NA	35864215	35891904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_35864451_35866742_35866858_35870211_35870321_35872655_35872779_35891839
ENSMUSG00000034379.10_35864216_35891904_3	chr16	+	642	5	Genic_Genomic	ENSMUSG00000034379.10	novel	2739	1	NA	NA	2656	27606	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2703	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCGGCCGCGGCGCTGGC	7034	False	NA	NA	False	NA	NA	NA	35864215	35891904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_35864462_35866748_35866858_35870211_35870311_35872655_35872779_35891839
ENSMUSG00000034379.10_35864216_35891904_4	chr16	+	641	5	Genic_Genomic	ENSMUSG00000034379.10	novel	2739	1	NA	NA	2656	27606	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2528	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCGGCCGCGGCGCTGGC	7034	False	NA	NA	False	NA	NA	NA	35864215	35891904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_35864451_35866748_35866858_35870211_35870321_35872655_35872779_35891839
ENSMUSG00000034379.10_35864216_35891964_1	chr16	+	718	5	Genic_Genomic	ENSMUSG00000034379.10	novel	2739	1	NA	NA	2656	27666	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7272	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGTGGGCGGGGCGTGCCG	7034	False	NA	NA	False	NA	NA	NA	35864215	35891964	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_35864462_35866742_35866858_35870211_35870321_35872655_35872779_35891839
ENSMUSG00000034379.10_35864216_35891964_2	chr16	+	860	6	Genic_Genomic	ENSMUSG00000034379.10	novel	2739	1	NA	NA	2656	27666	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1941	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGTGGGCGGGGCGTGCCG	7034	False	NA	NA	False	NA	NA	NA	35864215	35891964	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_35864462_35866748_35866858_35867422_35867571_35870211_35870321_35872655_35872779_35891839
ENSMUSG00000034379.10_35864216_35892387_1	chr16	+	707	5	Fusion	ENSMUSG00000075229.12_ENSMUSG00000034379.10	novel	1073	5	NA	NA	2656	-13325	multi-exon	FALSE	non_canonical	0	0	junction_1	0	521	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGCACCGCGGACACCT	7034	False	NA	NA	False	NA	NA	NA	35864215	35892387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr16_+_35864462_35866748_35866858_35870211_35870321_35872655_35872779_35892267
ENSMUSG00000034382.15_47779264_47781069_1	chr17	+	1384	2	ISM	ENSMUSG00000034382.15	ENSMUST00000150819.3	4866	5	31534	494	31534	0	3prime_fragment	FALSE	canonical	3	11	junction_1	0	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTTTGTGTGTTGTGT	NA	False	NA	33	True	AATATA	-23	NA	47779263	47781069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_47779779_47780200
ENSMUSG00000034391.13_84952676_84999598_1	chr18	+	1714	11	NNC	ENSMUSG00000034391.13	novel	1910	10	NA	NA	-231	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	245.728081423349	970	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGGTGTCTTATTT	569	False	NA	26	True	AATAAA	-15	NA	84952675	84999598	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_84952762_84953188_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
ENSMUSG00000034391.13_84952784_84999598_1	chr18	+	2033	10	FSM	ENSMUSG00000034391.13	ENSMUST00000224467.3	1910	10	-123	0	-123	0	multi-exon	FALSE	canonical	3	723	junction_3	71.0602248487546	3856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGGTGTCTTATTT	677	False	NA	26	True	AATAAA	-15	NA	84952783	84999598	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
ENSMUSG00000034391.13_84953030_84999598_1	chr18	+	1787	10	FSM	ENSMUSG00000034391.13	ENSMUST00000224467.3	1910	10	123	0	-123	0	multi-exon	FALSE	canonical	3	723	junction_3	71.0602248487546	3384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGGTGTCTTATTT	923	False	NA	26	True	AATAAA	-15	NA	84953029	84999598	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
ENSMUSG00000034391.13_84953153_84999598_1	chr18	+	1664	10	FSM	ENSMUSG00000034391.13	ENSMUST00000037718.10	1437	10	-130	-97	0	0	multi-exon	FALSE	canonical	3	723	junction_3	71.0602248487546	3143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGGTGTCTTATTT	1046	False	NA	26	True	AATAAA	-15	NA	84953152	84999598	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
ENSMUSG00000034403.17_98509720_98514294_1	chrX	-	2273	2	FSM	ENSMUSG00000034403.17	ENSMUST00000167246.2	2666	2	47	346	-1	0	multi-exon	FALSE	canonical	3	379	junction_1	0	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAATGGCATCATTTGG	NA	False	NA	-4	True	ATTAAA	-22	NA	98514294	98509719	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_98511921_98514222
ENSMUSG00000034403.17_98509720_98514294_2	chrX	-	1733	3	FSM	ENSMUSG00000034403.17	ENSMUST00000113790.8	2108	3	-1	376	-1	0	multi-exon	FALSE	canonical	3	92	junction_1	143.5	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAATGGCATCATTTGG	NA	False	NA	-4	True	ATTAAA	-22	NA	98514294	98509719	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_98511189_98511728_98511921_98514222
ENSMUSG00000034403.17_98510056_98514294_1	chrX	-	1397	3	FSM	ENSMUSG00000034403.17	ENSMUST00000113790.8	2108	3	-1	712	-1	-304	multi-exon	FALSE	canonical	3	92	junction_1	143.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTGATTCCTTGTGATT	NA	False	NA	NA	False	ACTAAA	-1	NA	98514294	98510055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_98511189_98511728_98511921_98514222
ENSMUSG00000034416.19_117736062_117743750_1	chr8	-	1192	5	ISM	ENSMUSG00000034416.19	ENSMUST00000162080.2	1716	8	7084	0	7084	0	3prime_fragment	FALSE	canonical	3	20	junction_4	5.53962995154008	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGGCATGTTCTTATTT	4507	False	NA	NA	False	TATAAA	-19	NA	117743750	117736061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_117736470_117738236_117738365_117740602_117740737_117741601_117741930_117743556
ENSMUSG00000034424.6_117708711_117720276_1	chr8	-	1276	5	NNC	ENSMUSG00000034424.6	novel	1443	5	NA	NA	0	-162	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	904.936841718802	11044	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATTGTGATTTTTATTT	NA	False	NA	-9	True	AATAAA	-16	NA	117720276	117708710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_117709466_117710546_117710674_117714051_117714116_117715862_117715943_117720026
ENSMUSG00000034424.6_117708711_117720276_2	chr8	-	1281	5	FSM	ENSMUSG00000034424.6	ENSMUST00000040484.6	1443	5	0	162	0	-162	multi-exon	FALSE	canonical	3	1952	junction_3	87.9982244139051	11140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATTGTGATTTTTATTT	NA	False	NA	-9	True	AATAAA	-16	NA	117720276	117708710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_117709466_117710546_117710679_117714051_117714116_117715862_117715943_117720026
ENSMUSG00000034429.16_75841156_75847595_2	chr15	+	1616	4	FSM	ENSMUSG00000034429.16	ENSMUST00000109966.8	1803	4	184	3	0	0	multi-exon	FALSE	canonical	3	24	junction_3	7.71722460186015	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAGAAGCCTGTTCTTCA	NA	False	NA	8	True	AATAAA	-13	NA	75841155	75847595	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_75841254_75844930_75845058_75845390_75845505_75846318
ENSMUSG00000034432.12_90531221_90540846_1	chr1	+	1552	8	FSM	ENSMUSG00000034432.12	ENSMUST00000036153.12	2287	8	518	217	0	0	multi-exon	FALSE	canonical	3	708	junction_7	24.8185250100297	2439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTGGCTCTAGAAATTT	NA	False	NA	25	True	AATAAA	-30	NA	90531220	90540846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_90531350_90532096_90532168_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
ENSMUSG00000034432.12_90531221_90541063_1	chr1	+	1769	8	FSM	ENSMUSG00000034432.12	ENSMUST00000036153.12	2287	8	518	0	0	0	multi-exon	FALSE	canonical	3	708	junction_7	24.8185250100297	2739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTAGTGGGTTACCTAA	NA	False	NA	21	True	ATTAAA	-22	NA	90531220	90541063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_90531350_90532096_90532168_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
ENSMUSG00000034442.12_73327255_73333498_1	chr12	-	959	4	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	38.0029238641216	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCACACAGATATTTGTTA	NA	False	NA	-95	True	NA	NA	NA	73333498	73327254	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_73327407_73329385_73329511_73331408_73332050_73333457
ENSMUSG00000034445.9_10554815_10567194_2	chr19	+	2852	8	FSM	ENSMUSG00000034445.9	ENSMUST00000237814.2	3130	8	279	-1	0	1	multi-exon	FALSE	canonical	3	46	junction_1	19.4768308196049	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTCTCTTTTGTTCAGAC	NA	False	NA	15	True	ATTAAA	-18	NA	10554814	10567194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_10555448_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
ENSMUSG00000034457.11_96339081_96420839_1	chrX	-	1207	8	NNC	ENSMUSG00000034457.11	novel	779	6	NA	NA	-17	38365	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	50.6117676080194	63	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGTTGCTTTTTAAAAG	NA	False	NA	NA	False	AATAAA	-15	NA	96420839	96339080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_96339435_96340422_96340518_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
ENSMUSG00000034484.9_53309440_53336314_1	chr18	+	857	7	ISM	ENSMUSG00000034484.9	ENSMUST00000037850.7	2067	15	52	17623	0	149	5prime_fragment	FALSE	canonical	3	861	junction_5	68.4178339323893	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCAGGGTTATGTCATAAT	NA	False	NA	NA	False	AATAAA	-17	NA	53309439	53336314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_+_53309560_53322726_53322845_53327501_53327666_53330926_53330994_53331257_53331302_53332828_53332971_53336112
ENSMUSG00000034484.9_53309440_53353577_1	chr18	+	1655	15	FSM	ENSMUSG00000034484.9	ENSMUST00000037850.7	2067	15	52	360	0	-360	multi-exon	FALSE	canonical	0	0	junction_13	254.699312515598	1115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGGGTTTTTTATA	NA	False	NA	NA	False	AATAAA	-20	NA	53309439	53353577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_53309560_53322726_53322845_53327501_53327666_53330926_53330994_53331257_53331302_53332828_53332971_53336112_53336192_53342659_53342736_53343401_53343516_53343770_53343865_53345824_53346031_53349452_53349597_53351173_53351255_53351360_53351433_53353443
ENSMUSG00000034493.2_3914009_3929221_1	chr11	-	2094	15	Genic_Genomic	ENSMUSG00000034493.2	novel	1220	2	NA	NA	-2443	-26468	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3764	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAACACCAGAGCTACTTC	2819	False	NA	NA	False	NA	NA	NA	3929221	3914008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr11_-_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
ENSMUSG00000034520.15_102691557_102710526_1	chr11	-	738	3	FSM	ENSMUSG00000034520.15	ENSMUST00000092567.11	1890	3	0	1152	0	0	multi-exon	FALSE	canonical	3	30	junction_2	376	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAAATAAAGAGCAG	NA	False	NA	3	True	NA	NA	NA	102710526	102691556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102692022_102693666_102693743_102710329
ENSMUSG00000034532.10_65504104_65558951_1	chr14	+	1275	8	FSM	ENSMUSG00000034532.10	ENSMUST00000224629.2	3781	8	37	2469	0	1	multi-exon	FALSE	canonical	2	16	junction_5	3.88087934491604	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTACTGTGAAAGGTCCTG	2575	False	NA	NA	False	ATTAAA	-18	NA	65504103	65558951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_65504233_65508148_65508285_65524580_65524617_65531232_65531440_65532841_65533007_65536634_65536865_65540548_65540652_65558682
ENSMUSG00000034544.18_66893018_67263891_1	chr3	+	1374	10	FSM	ENSMUSG00000034544.18	ENSMUST00000065074.14	3224	10	13	1837	0	0	multi-exon	FALSE	canonical	3	299	junction_4	31.3821526695165	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTAGTGTTGAAATAAATG	NA	False	NA	NA	False	AATAAA	-16	NA	66893017	67263891	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
ENSMUSG00000034544.18_66893018_67264291_1	chr3	+	1774	10	FSM	ENSMUSG00000034544.18	ENSMUST00000065074.14	3224	10	13	1437	0	399	multi-exon	FALSE	canonical	3	299	junction_4	31.3821526695165	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCGATTTGTATCACGCGT	NA	False	NA	14	True	AATAAA	-20	NA	66893017	67264291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
ENSMUSG00000034560.7_83430140_83432337_1	chr10	+	1994	2	NNC	ENSMUSG00000034560.7	novel	5858	33	NA	NA	8483	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAAAACTGTCCTTCCAT	NA	False	NA	14	True	AATAAA	-17	NA	83430139	83432337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_83431746_83431949
ENSMUSG00000034595.18_36181268_36186488_1	chr17	+	1080	3	NNC	ENSMUSG00000034595.18	novel	3524	3	NA	NA	1973	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	41	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGCCTTCCTTTGTTTC	NA	False	NA	15	True	AATAAA	-22	NA	36181267	36186488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_36181334_36184617_36184832_36185688
ENSMUSG00000034613.13_122638333_122777510_1	chr10	+	1174	8	ISM	ENSMUSG00000034613.13	ENSMUST00000067918.12	6369	10	123646	4190	-8816	156	3prime_fragment	FALSE	canonical	3	22	junction_1	4.03049599419025	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGAGTGTTATATTTCT	NA	False	NA	12	True	NA	NA	NA	122638332	122777510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_122638485_122647351_122647465_122692966_122693052_122714413_122714533_122739996_122740061_122743411_122743520_122756598_122756751_122777129
ENSMUSG00000034617.8_68709482_68730246_1	chr13	-	3115	15	FSM	ENSMUSG00000034617.8	ENSMUST00000045827.5	3692	15	-6	583	-6	0	multi-exon	FALSE	canonical	3	277	junction_10	41.7021141733919	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAAAAAAAGAACT	NA	False	NA	-90	True	NA	NA	NA	68730246	68709481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68730183
ENSMUSG00000034617.8_68727591_68730246_1	chr13	-	453	3	ISM	ENSMUSG00000034617.8	ENSMUST00000223101.2	2728	14	-14	18109	-6	0	5prime_fragment	FALSE	canonical	3	370	junction_2	18.5	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAGTTGCATAGGCCT	NA	False	NA	NA	False	AATATA	-16	NA	68730246	68727590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_68727816_68728669_68728835_68730183
ENSMUSG00000034620.18_121917165_121933075_1	chr10	-	1131	5	NIC	ENSMUSG00000034620.18	novel	1546	7	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	119.281966365415	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTATTCATAAGTGTAA	NA	False	NA	-10	True	AATAAA	-19	NA	121933075	121917164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_121917595_121924783_121924955_121930494_121930598_121931843_121932000_121932804
ENSMUSG00000034620.18_121917165_121933075_2	chr10	-	1363	6	NNC	ENSMUSG00000034620.18	novel	1546	7	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	114.634026362158	1011	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTATTCATAAGTGTAA	NA	False	NA	-10	True	AATAAA	-19	NA	121933075	121917164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_121917512_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932000_121932804
ENSMUSG00000034620.18_121924550_121933075_1	chr10	-	1250	5	ISM	ENSMUSG00000034620.18	ENSMUST00000140299.3	4793	6	201	10531	-14	0	5prime_fragment	FALSE	canonical	3	258	junction_4	22.2078251974389	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTACCAAACTATCATAT	NA	False	NA	NA	False	ATTAAA	-12	NA	121933075	121924549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_121924955_121926364_121926680_121930494_121930598_121931843_121932000_121932804
ENSMUSG00000034621.15_102388247_102447002_1	chr11	-	633	7	NNC	ENSMUSG00000034621.15	novel	390	6	NA	NA	0	10073	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	58.3628496753048	116	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACTCGGCTTAAACTTTC	660	False	NA	NA	False	AATAAA	-7	NA	102447002	102388246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_102388336_102391628_102391773_102398268_102398356_102398969_102399038_102418919_102418993_102429107_102429183_102446905
ENSMUSG00000034636.10_108122985_108158293_1	chr4	-	1157	3	ISM	ENSMUSG00000034636.10	ENSMUST00000043616.7	8691	14	0	36064	0	-24322	5prime_fragment	FALSE	canonical	3	118	junction_2	1	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCAGGTTTTTTTTTCC	NA	False	NA	NA	False	ATTAAA	-18	NA	108158293	108122984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_108123770_108129414_108129581_108158087
ENSMUSG00000034645.15_108038824_108046667_1	chr4	-	666	5	ISM	ENSMUSG00000034645.15	ENSMUST00000223127.2	2283	14	28452	-111	28452	111	3prime_fragment	FALSE	canonical	3	53	junction_1	8.69985632065266	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTGGTTACTTTTCTCT	5230	False	NA	-3	True	NA	NA	NA	108046667	108038823	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_108039111_108040844_108040943_108041629_108041692_108044436_108044632_108046643
ENSMUSG00000034647.16_66343793_66384039_1	chr17	-	1289	4	FSM	ENSMUSG00000034647.16	ENSMUST00000135136.8	943	4	-5	-341	0	0	multi-exon	FALSE	canonical	3	24	junction_1	25.5734237050888	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATCTGTGTGTCTGTAT	NA	False	NA	NA	False	AATAAA	-16	NA	66384039	66343792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_66344635_66356780_66356929_66359948_66360087_66383878
ENSMUSG00000034647.16_66344134_66384039_1	chr17	-	1017	5	FSM	ENSMUSG00000034647.16	ENSMUST00000129756.8	1403	5	45	341	0	0	multi-exon	FALSE	canonical	2	19	junction_2	27.5170401751351	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATTTTTTAGGAAATTA	NA	False	NA	NA	False	AATAAA	-30	NA	66384039	66344133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_66344635_66349527_66349597_66356780_66356929_66359948_66360087_66383878
ENSMUSG00000034659.15_10848024_10859110_1	chr19	-	1933	4	FSM	ENSMUSG00000034659.15	ENSMUST00000038128.15	2188	4	255	0	-15	0	multi-exon	TRUE	canonical	3	149	junction_2	8.28653526310404	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGCTGACAAACTCTC	NA	False	NA	-3	True	AATAAA	-17	NA	10859110	10848023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10849514_10849950_10850054_10851605_10851851_10859015
ENSMUSG00000034674.19_82465662_82486158_1	chr10	+	3058	10	FSM	ENSMUSG00000034674.19	ENSMUST00000151390.8	3502	10	-31	475	0	0	multi-exon	FALSE	canonical	0	0	junction_9	366.010456573289	1833	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTTAGTATACAGGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	82465661	82486158	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_82465873_82474534_82474711_82477149_82477392_82477854_82477925_82480003_82480140_82480284_82480368_82480448_82480544_82483055_82483228_82483786_82483913_82484411
ENSMUSG00000034674.19_82465710_82484821_1	chr10	+	1673	10	FSM	ENSMUSG00000034674.19	ENSMUST00000151390.8	3502	10	17	1812	0	108	multi-exon	FALSE	canonical	0	0	junction_9	366.010456573289	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGTTTTCTCTGAGGAGTC	NA	False	NA	NA	False	AAGAAA	-1	NA	82465709	82484821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_82465873_82474534_82474711_82477149_82477392_82477854_82477925_82480003_82480140_82480284_82480368_82480448_82480544_82483055_82483228_82483786_82483913_82484411
ENSMUSG00000034674.19_82465710_82486158_1	chr10	+	3010	10	FSM	ENSMUSG00000034674.19	ENSMUST00000151390.8	3502	10	17	475	0	0	multi-exon	FALSE	canonical	0	0	junction_9	366.010456573289	1781	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTTAGTATACAGGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	82465709	82486158	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_82465873_82474534_82474711_82477149_82477392_82477854_82477925_82480003_82480140_82480284_82480368_82480448_82480544_82483055_82483228_82483786_82483913_82484411
ENSMUSG00000034681.18_24633649_24644872_1	chr17	+	2229	8	NIC	ENSMUSG00000034681.18	novel	1920	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	495	junction_1	374.654888816743	3327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGCTGGTTTTACTGT	913	False	NA	NA	False	AATAAA	-21	NA	24633648	24644872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_24634137_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUSG00000034686.9_55620173_55620967_1	chr13	+	639	2	ISM	ENSMUSG00000034686.9	ENSMUST00000046533.9	1359	3	8093	0	8093	0	3prime_fragment	FALSE	canonical	1	2	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCGGAGGGGGATACCAG	NA	False	NA	NA	False	AATAAA	-22	NA	55620172	55620967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_55620250_55620405
ENSMUSG00000034706.17_114642446_114648715_1	chr11	+	1369	5	NNC	ENSMUSG00000034706.17	novel	597	3	NA	NA	-1056	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.5	23	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTGTCATGTGTGCCAT	NA	False	NA	NA	False	ATTAAA	-20	NA	114642445	114648715	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_114642536_114642611_114642748_114643682_114643830_114645060_114645289_114647947
ENSMUSG00000034708.13_102321344_102327633_1	chr11	+	2135	13	FSM	ENSMUSG00000034708.13	ENSMUST00000049460.12	2331	13	196	0	0	0	multi-exon	FALSE	canonical	3	528	junction_1	53.84932682959	1917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGTATCTGATTTGTTGC	4334	False	NA	15	True	AATAAA	-17	NA	102321343	102327633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
ENSMUSG00000034729.17_47679823_47689450_1	chr17	+	855	7	FSM	ENSMUSG00000034729.17	ENSMUST00000119945.8	1018	7	7	156	0	-153	multi-exon	FALSE	canonical	3	774	junction_2	381.394116659162	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTGTAGCGCTGCTGA	7148	False	NA	NA	False	TTTAAA	-1	NA	47679822	47689450	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_47679880_47683351_47683417_47683497_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
ENSMUSG00000034729.17_47679823_47689606_1	chr17	+	1004	7	NNC	ENSMUSG00000034729.17	novel	1018	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	665.668502751599	5948	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTGGTTTTGTTTACT	7148	False	NA	7	True	NA	NA	NA	47679822	47689606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_47679880_47683351_47683417_47683497_47683571_47685897_47686035_47686865_47686968_47688684_47688775_47689126
ENSMUSG00000034729.17_47679823_47689606_2	chr17	+	1002	7	NNC	ENSMUSG00000034729.17	novel	1018	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	653.932314710186	6367	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTGGTTTTGTTTACT	7148	False	NA	7	True	NA	NA	NA	47679822	47689606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_47679880_47683351_47683417_47683506_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
ENSMUSG00000034729.17_47683396_47689606_1	chr17	+	907	6	ISM	ENSMUSG00000034729.17	ENSMUST00000060752.13	1109	7	3274	-3	0	0	3prime_fragment	FALSE	canonical	3	977	junction_1	336.099033024494	1144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTGGTTTTGTTTACT	NA	False	NA	7	True	NA	NA	NA	47683395	47689606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_47683417_47683500_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
ENSMUSG00000034744.14_83772143_83779538_1	chr6	+	1192	10	FSM	ENSMUSG00000034744.14	ENSMUST00000113851.8	1323	10	133	-2	0	0	multi-exon	FALSE	canonical	3	32	junction_1	71.6054001687955	1080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTGTCATCTTCCATA	9437	False	NA	13	True	AATAAA	-21	NA	83772142	83779538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83772231_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
ENSMUSG00000034744.14_83772190_83779538_1	chr6	+	1174	10	NNC	ENSMUSG00000034744.14	novel	1405	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	81.4936186246703	1087	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTGTCATCTTCCATA	9484	False	NA	13	True	AATAAA	-21	NA	83772189	83779538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_83772265_83773893_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
ENSMUSG00000034748.17_81457621_81463415_1	chr10	-	1675	8	FSM	ENSMUSG00000034748.17	ENSMUST00000042923.9	1891	8	216	0	-15	0	multi-exon	FALSE	canonical	3	197	junction_1	20.6723713873254	320	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTGTTACATTTATGTA	9874	False	NA	-11	True	AATAAA	-25	NA	81463415	81457620	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81463305
ENSMUSG00000034773.17_102139708_102142181_1	chr11	+	888	2	ISM	ENSMUSG00000034773.17	ENSMUST00000133930.8	2813	11	0	13832	0	-9259	5prime_fragment	FALSE	canonical	3	336	junction_1	0	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGAGTGTGAGTAAGTGG	NA	False	NA	NA	False	AAAAAG	-1	NA	102139707	102142181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_102139919_102141504
ENSMUSG00000034777.3_83688246_83710738_1	chr6	+	689	3	NNC	ENSMUSG00000034777.3	novel	1242	3	NA	NA	0	-4557	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	57	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAATGCCCCGTGTGGAA	NA	False	NA	NA	False	NA	NA	NA	83688245	83710738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_83688526_83710080_83710269_83710517
ENSMUSG00000034789.9_55467693_55468523_2	chr13	-	628	3	FSM	ENSMUSG00000034789.9	ENSMUST00000224685.2	454	3	-174	0	-174	0	multi-exon	FALSE	canonical	3	19	junction_1	310	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCACTGGGTGTCAAA	7677	False	NA	-17	True	AATAAA	-19	NA	55468523	55467692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_55468050_55468124_55468188_55468315
ENSMUSG00000034789.9_55467693_55468523_3	chr13	-	606	3	ISM	ENSMUSG00000034789.9	ENSMUST00000035242.9	1168	8	1235	-5	-174	0	3prime_fragment	FALSE	canonical	3	549	junction_1	45	863	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCACTGGGTGTCAAA	7677	False	NA	-17	True	AATAAA	-19	NA	55468523	55467692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_55468028_55468124_55468188_55468315
ENSMUSG00000034789.9_55467693_55469744_1	chr13	-	531	4	NNC	ENSMUSG00000034789.9	novel	1592	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	281.479819683204	232	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCACTGGGTGTCAAA	6456	False	NA	-17	True	AATAAA	-19	NA	55469744	55467692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_55468028_55468124_55468188_55468315_55468367_55469662
ENSMUSG00000034792.9_81338147_81348054_1	chr10	-	1301	4	ISM	ENSMUSG00000034792.9	ENSMUST00000150586.2	661	5	419	-774	419	0	3prime_fragment	FALSE	canonical	1	3	junction_2	34.1792659696229	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATCAGGGAACTGAGGAAG	9330	False	NA	NA	False	AATAAA	-18	NA	81348054	81338146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_81338940_81343761_81343916_81345119_81345250_81347830
ENSMUSG00000034845.7_71950409_71960341_1	chr8	-	949	4	NNC	ENSMUSG00000034845.7	novel	1987	6	NA	NA	4055	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	7.07106781186548	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGTTTGTATTTGTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	71960341	71950408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_71951050_71959480_71959563_71959663_71959722_71960173
ENSMUSG00000034845.7_71950409_71960341_2	chr8	-	878	4	ISM	ENSMUSG00000034845.7	ENSMUST00000048452.6	1987	6	4055	0	4055	0	3prime_fragment	FALSE	canonical	3	9	junction_3	3.77123616632825	77	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGTTTGTATTTGTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	71960341	71950408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_71951050_71959480_71959563_71959663_71959722_71960244
ENSMUSG00000034868.10_71281021_71297525_1	chr17	-	890	4	FSM	ENSMUSG00000034868.10	ENSMUST00000038446.10	2143	4	360	893	0	0	multi-exon	FALSE	canonical	3	1955	junction_2	187.919013289118	3921	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTTCTGGTTTTGCTGGA	3404	False	NA	-34	True	AATAAA	-37	NA	71297525	71281020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_71281492_71282453_71282616_71284042_71284242_71297467
ENSMUSG00000034868.10_71281266_71297525_1	chr17	-	645	4	FSM	ENSMUSG00000034868.10	ENSMUST00000038446.10	2143	4	360	1138	0	0	multi-exon	FALSE	canonical	3	1955	junction_2	187.919013289118	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACACACACACCCCATAGG	3404	False	NA	NA	False	NA	NA	NA	71297525	71281265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_71281492_71282453_71282616_71284042_71284242_71297467
ENSMUSG00000034875.6_35246610_35254735_1	chr7	-	1304	3	FSM	ENSMUSG00000034875.6	ENSMUST00000040962.6	2298	3	994	0	-116	0	multi-exon	FALSE	canonical	3	351	junction_1	2	1684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTATTTTTTATTCTACT	NA	False	NA	2	True	ATTAAA	-29	NA	35254735	35246609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_35247549_35250878_35251087_35254578
ENSMUSG00000034875.6_35246610_35254735_2	chr7	-	1185	3	FSM	ENSMUSG00000034875.6	ENSMUST00000142930.2	733	3	-116	-336	-116	0	multi-exon	FALSE	canonical	3	20	junction_2	165.5	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTATTTTTTATTCTACT	NA	False	NA	2	True	ATTAAA	-29	NA	35254735	35246609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_35247549_35250878_35250968_35254578
ENSMUSG00000034875.6_35246610_35254902_1	chr7	-	1352	3	FSM	ENSMUSG00000034875.6	ENSMUST00000142930.2	733	3	-283	-336	-283	0	multi-exon	FALSE	canonical	3	20	junction_2	165.5	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTATTTTTTATTCTACT	NA	False	NA	2	True	ATTAAA	-29	NA	35254902	35246609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_35247549_35250878_35250968_35254578
ENSMUSG00000034875.6_35247141_35254735_1	chr7	-	654	3	FSM	ENSMUSG00000034875.6	ENSMUST00000142930.2	733	3	-116	195	-116	-195	multi-exon	FALSE	canonical	3	20	junction_2	165.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAACGGTTTCACGACAG	NA	False	NA	-3	True	AGTAAA	-15	NA	35254735	35247140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_35247549_35250878_35250968_35254578
ENSMUSG00000034880.8_71917603_71918391_1	chr8	+	600	2	NNC	ENSMUSG00000034880.8	novel	607	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	8665	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTACGTATGTATTAACT	8920	False	NA	18	True	AATAAA	-18	NA	71917602	71918391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71917705_71917893
ENSMUSG00000034883.10_69215616_69225783_1	chr12	+	916	4	NIC	ENSMUSG00000034883.10	novel	1500	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	8	junction_2	56.8409085860605	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAATGTCTCAGCAGTTA	NA	False	NA	9	True	ATTAAA	-23	NA	69215615	69225783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_69215837_69218635_69218735_69221721_69221888_69225353
ENSMUSG00000034891.14_54906673_54914352_1	chr13	-	1293	6	NNC	ENSMUSG00000034891.14	novel	1351	6	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	35.7636687156114	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCGCCGCCTAGGCAGG	NA	False	NA	-1	True	AATAAA	-16	NA	54914352	54906672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_54907355_54907680_54907765_54910451_54910575_54910734_54910774_54913375_54913506_54914117
ENSMUSG00000034917.9_81104055_81109070_1	chr10	-	2047	11	NIC	ENSMUSG00000034917.9	novel	3024	21	NA	NA	6881	4986	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACTGCACCATCCAGGAC	NA	False	NA	NA	False	NA	NA	NA	81109070	81104054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_81104154_81104612_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
ENSMUSG00000034917.9_81113822_81121619_1	chr10	-	1629	13	NIC	ENSMUSG00000034917.9	novel	3024	21	NA	NA	-4	636	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	36.7705913589772	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGGCCTGGGCTTCACC	7836	False	NA	NA	False	NA	NA	NA	81121619	81113821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938_81117267_81118771_81118875_81119329_81119440_81119516_81119574_81121434
ENSMUSG00000034917.9_81113822_81127103_1	chr10	-	1666	13	ISM	ENSMUSG00000034917.9	ENSMUST00000045744.7	3024	21	-2	4781	-2	636	5prime_fragment	FALSE	canonical	3	41	junction_12	26.560727065015	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGGCCTGGGCTTCACC	7295	False	NA	NA	False	NA	NA	NA	81127103	81113821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938_81117267_81118771_81118875_81119329_81119440_81119516_81119574_81126881
ENSMUSG00000034930.17_83119227_83129560_1	chr6	+	2259	12	NIC	ENSMUSG00000034930.17	novel	653	6	NA	NA	-146	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	15.2196045821291	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCTTTCACTTGTCTT	1504	False	NA	18	True	ATTAAA	-18	NA	83119226	83129560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_83119543_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
ENSMUSG00000034932.5_81100547_81102758_1	chr10	-	584	3	NNC	ENSMUSG00000034932.5	novel	604	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	486	7453	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTCATGCCCTGTG	3104	False	NA	0	True	AATAAA	-29	NA	81102758	81100546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_81100822_81101484_81101642_81102606
ENSMUSG00000034936.3_101556367_101558658_1	chr11	+	1220	2	NNC	ENSMUSG00000034936.3	novel	1382	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	128	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTTGATCTGGTAACT	2550	False	NA	NA	False	ATTAAA	-18	NA	101556366	101558658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_101556464_101557535
ENSMUSG00000034947.14_101473126_101481743_1	chr11	+	1375	9	FSM	ENSMUSG00000034947.14	ENSMUST00000039581.14	2304	9	58	871	0	151	multi-exon	FALSE	canonical	3	13	junction_1	4.99843725578305	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTTTGATCATGTGATAA	3746	False	NA	NA	False	TATAAA	-18	NA	101473125	101481743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101473152_101473450_101473531_101474383_101474611_101475271_101475336_101477064_101477219_101479678_101479820_101479923_101479968_101480760_101480815_101481158
ENSMUSG00000034973.17_86437054_86453855_1	chr9	+	2011	13	NNC	ENSMUSG00000034973.17	novel	8890	37	NA	NA	5384	15879	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	145	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCTCGCAGACGTGGCCC	NA	False	NA	NA	False	NA	NA	NA	86437053	86453855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_86437457_86438244_86438419_86439561_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
ENSMUSG00000034973.17_86437054_86453855_2	chr9	+	2017	13	NIC	ENSMUSG00000034973.17	novel	8890	37	NA	NA	5384	15879	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	890	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCTCGCAGACGTGGCCC	NA	False	NA	NA	False	NA	NA	NA	86437053	86453855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_86437457_86438244_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
ENSMUSG00000034993.8_101356562_101362679_1	chr11	-	1327	5	NIC	ENSMUSG00000034993.8	novel	2766	6	NA	NA	-5623	-6991	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGGCGAAGGCGTCGGCG	NA	False	NA	NA	False	NA	NA	NA	101362679	101356561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_101356760_101359758_101359847_101360838_101360949_101361543_101361679_101361883
ENSMUSG00000034994.11_81016885_81018332_1	chr10	+	1033	4	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	4420	0	0	0	3prime_fragment	FALSE	canonical	3	7305	junction_1	399.251243649354	56685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	6601	False	NA	32	True	AATAAA	-20	NA	81016884	81018332	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_81016992_81017061_81017245_81017326_81017460_81017722
ENSMUSG00000034994.11_81017344_81018332_1	chr10	+	726	2	ISM	ENSMUSG00000034994.11	ENSMUST00000219497.2	651	3	459	-464	459	0	3prime_fragment	FALSE	canonical	3	7978	junction_1	0	46836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	7060	False	NA	32	True	AATAAA	-20	NA	81017343	81018332	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_81017460_81017722
ENSMUSG00000035000.9_62204599_62242203_1	chr2	-	935	9	ISM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	372	44182	0	0	5prime_fragment	FALSE	canonical	3	219	junction_8	22.5596431709369	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGCTTTCTCTGATTTCT	NA	False	NA	NA	False	AATGAA	-21	NA	62242203	62204598	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
ENSMUSG00000035027.19_80944581_80959717_1	chr10	+	1268	10	ISM	ENSMUSG00000035027.19	ENSMUST00000143517.8	2405	11	2832	814	2402	0	3prime_fragment	FALSE	canonical	3	212	junction_6	162.286288718958	298	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCGGCTGTGCTCCTGCC	3932	False	NA	13	True	NA	NA	NA	80944580	80959717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_80944793_80950859_80951007_80953985_80954064_80954942_80954995_80955090_80955216_80955323_80955538_80956876_80956945_80957736_80957799_80958400_80958447_80959453
ENSMUSG00000035047.10_21176602_21185043_1	chr9	-	1913	10	NIC	ENSMUSG00000035047.10	novel	2490	18	NA	NA	1646	8151	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACCCGGATACGGTGGGC	NA	False	NA	NA	False	NA	NA	NA	21185043	21176601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_21177014_21178034_21178119_21178202_21178377_21179546_21179824_21179900_21179966_21182015_21182147_21183763_21183843_21183931_21184009_21184086_21184207_21184549
ENSMUSG00000035048.14_102503495_102511441_1	chr9	+	406	3	FSM	ENSMUSG00000035048.14	ENSMUST00000190279.7	589	3	0	183	0	0	multi-exon	TRUE	canonical	3	1105	junction_1	209.5	17777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCCCACTTGGTTTTCGT	NA	False	NA	17	True	AATAAA	-17	NA	102503494	102511441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_102503546_102506961_102507088_102511212
ENSMUSG00000035048.14_102503862_102511441_1	chr9	+	380	3	FSM	ENSMUSG00000035048.14	ENSMUST00000188398.7	727	3	339	8	0	0	multi-exon	FALSE	canonical	3	126	junction_1	699	1924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCCCACTTGGTTTTCGT	NA	False	NA	17	True	AATAAA	-17	NA	102503861	102511441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_102503887_102506961_102507088_102511212
ENSMUSG00000035051.16_80597641_80604905_1	chr17	-	510	4	NIC	ENSMUSG00000035051.16	novel	4913	23	NA	NA	-7000	-25137	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTCACCCGGAAGCAAAAG	NA	False	NA	NA	False	NA	NA	NA	80604905	80597640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_80597767_80599753_80599808_80601898_80602006_80604682
ENSMUSG00000035051.16_80597641_80604905_2	chr17	-	642	5	NNC	ENSMUSG00000035051.16	novel	4913	23	NA	NA	-7000	-25137	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	939	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTCACCCGGAAGCAAAAG	NA	False	NA	NA	False	NA	NA	NA	80604905	80597640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_80597767_80599753_80599808_80601898_80602006_80602941_80603079_80604687
ENSMUSG00000035051.16_80597641_80604905_3	chr17	-	593	4	NIC	ENSMUSG00000035051.16	novel	4913	23	NA	NA	-7000	-25137	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	183	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTCACCCGGAAGCAAAAG	NA	False	NA	NA	False	NA	NA	NA	80604905	80597640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_80597767_80601898_80602006_80602941_80603079_80604682
ENSMUSG00000035064.18_120442054_120503224_1	chr7	+	3131	18	FSM	ENSMUSG00000035064.18	ENSMUST00000047875.16	6580	18	0	3449	0	0	multi-exon	FALSE	canonical	3	73	junction_5	8.32971086202773	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGGCCTTTATACATGC	NA	False	NA	9	True	AATATA	-16	NA	120442053	120503224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_120442324_120457566_120457886_120472531_120472633_120475654_120475716_120479036_120479075_120479527_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
ENSMUSG00000035078.7_63761059_63781145_1	chr14	-	2151	10	FSM	ENSMUSG00000035078.7	ENSMUST00000058679.7	2570	10	286	133	286	-133	multi-exon	FALSE	canonical	3	201	junction_4	9.18936583472681	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGGACTAACAAAGCCT	NA	False	NA	-43	True	TATAAA	-23	NA	63781145	63761058	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_63761667_63764239_63764392_63765559_63765781_63767173_63767316_63767636_63767799_63771775_63771994_63774440_63774615_63777702_63777829_63779796_63779906_63780906
ENSMUSG00000035086.14_101179088_101193086_1	chr11	-	1987	12	NNC	ENSMUSG00000035086.14	novel	2123	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	179.909205751261	867	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193086	101179087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185791_101185991_101186120_101186258_101186359_101186405_101187083_101187143_101189834_101189903_101192553_101192683_101192957
ENSMUSG00000035086.14_101179088_101193086_2	chr11	-	2029	12	FSM	ENSMUSG00000035086.14	ENSMUST00000130916.8	4365	12	26	2310	0	0	multi-exon	FALSE	canonical	3	365	junction_8	49.9747043451001	1066	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193086	101179087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101186451_101187083_101187143_101189834_101189903_101192553_101192683_101192957
ENSMUSG00000035086.14_101179535_101193086_1	chr11	-	1582	12	FSM	ENSMUSG00000035086.14	ENSMUST00000130916.8	4365	12	26	2757	0	167	multi-exon	FALSE	canonical	3	365	junction_8	49.9747043451001	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAAATCCACAAAAGCTAC	NA	False	NA	-8	True	ATTAAA	-33	NA	101193086	101179534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101186451_101187083_101187143_101189834_101189903_101192553_101192683_101192957
ENSMUSG00000035104.15_82018857_82070080_1	chr6	+	1520	3	FSM	ENSMUSG00000035104.15	ENSMUST00000042974.15	1773	3	253	0	188	0	multi-exon	FALSE	canonical	3	34	junction_1	1.5	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGCTTCGTGTCTGTGTG	NA	False	NA	NA	False	AATAAA	-19	NA	82018856	82070080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_82018883_82048035_82048224_82068774
ENSMUSG00000035125.11_81936019_81942939_1	chr6	+	1066	6	NNC	ENSMUSG00000035125.11	novel	4192	17	NA	NA	9356	6043	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	419	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAGTCAGTGCGATGGGG	NA	False	NA	NA	False	AATGAA	-14	NA	81936018	81942939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_81936148_81938894_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
ENSMUSG00000035125.11_81936019_81942939_2	chr6	+	1199	6	NNC	ENSMUSG00000035125.11	novel	4192	17	NA	NA	9356	6043	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	445	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAGTCAGTGCGATGGGG	NA	False	NA	NA	False	AATGAA	-14	NA	81936018	81942939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_81936281_81938894_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
ENSMUSG00000035142.19_52144520_52193017_1	chr12	+	651	5	NNC	ENSMUSG00000035142.19	novel	2987	11	NA	NA	0	1454	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	105.637055525038	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAGACAAACTGTGAGACA	NA	False	NA	NA	False	CATAAA	-17	NA	52144519	52193017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_52144675_52145135_52145284_52147249_52147285_52190751_52190843_52192795
ENSMUSG00000035142.19_52144520_52357739_1	chr12	+	1199	11	FSM	ENSMUSG00000035142.19	ENSMUST00000040090.16	2987	11	0	1788	0	-1788	multi-exon	FALSE	canonical	3	215	junction_4	16.265300489078	1647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGCTGCTCTATGATGA	NA	False	NA	7	True	AATAAA	-16	NA	52144519	52357739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_52144675_52145135_52145284_52147249_52147285_52190751_52190843_52227874_52227915_52227999_52228091_52317821_52317916_52333120_52333207_52349463_52349585_52352580_52352664_52357484
ENSMUSG00000035142.19_52144520_52357739_2	chr12	+	1192	11	NNC	ENSMUSG00000035142.19	novel	2987	11	NA	NA	0	-1788	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	71.6575885723208	1628	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGCTGCTCTATGATGA	NA	False	NA	7	True	AATAAA	-16	NA	52144519	52357739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_52144675_52145135_52145284_52147249_52147285_52190751_52190843_52227874_52227915_52227999_52228091_52317821_52317916_52333120_52333207_52349463_52349585_52352580_52352664_52357491
ENSMUSG00000035150.16_93234309_93256257_1	chrX	-	1593	12	FSM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	58	1996	0	-1996	multi-exon	FALSE	canonical	3	1008	junction_2	64.9970120101527	1031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGACCTCTACTTTTTTTT	NA	False	NA	NA	False	TATAAA	-28	NA	93256257	93234308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
ENSMUSG00000035150.16_93247239_93256257_1	chrX	-	972	6	ISM	ENSMUSG00000035150.16	ENSMUST00000113922.2	1103	9	0	3992	0	-753	5prime_fragment	FALSE	canonical	3	1037	junction_3	70.6184111970809	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGCCTTGCTACTCAGC	NA	False	NA	NA	False	AATAAA	-15	NA	93256257	93247238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
ENSMUSG00000035171.10_21574676_21630164_1	chr19	-	1858	3	FSM	ENSMUSG00000035171.10	ENSMUST00000179768.8	962	3	117	-1013	0	0	multi-exon	FALSE	canonical	3	207	junction_2	1.5	1490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	629	False	NA	NA	False	AATAAA	-21	NA	21630164	21574675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_21576233_21596472_21596580_21629970
ENSMUSG00000035171.10_21574676_21768583_1	chr19	-	1321	4	NNC	ENSMUSG00000035171.10	novel	1614	4	NA	NA	-138243	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	88.3377357393518	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	NA	False	NA	NA	False	AATAAA	-21	NA	21768583	21574675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_21575699_21576118_21576233_21581652_21581674_21768420
ENSMUSG00000035198.10_101010965_101017245_1	chr11	+	1601	11	FSM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	201	0	201	0	multi-exon	FALSE	canonical	3	373	junction_8	104.461715475096	1654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1431	False	NA	16	True	AATAAA	-19	NA	101010964	101017245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
ENSMUSG00000035199.7_97187756_97210276_1	chr6	+	1336	3	FSM	ENSMUSG00000035199.7	ENSMUST00000044681.7	1442	3	106	0	106	0	multi-exon	FALSE	canonical	3	281	junction_2	50	1664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGTCTATATGGCACAT	8554	False	NA	10	True	AATAAA	-21	NA	97187755	97210276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_97187958_97206497_97206716_97209360
ENSMUSG00000035212.15_101504915_101515321_1	chr4	+	658	4	FSM	ENSMUSG00000035212.15	ENSMUST00000030254.15	1898	4	0	1240	0	-1240	multi-exon	FALSE	canonical	3	539	junction_3	48.8011839564939	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATTGACTCAAAGTGAA	8215	False	NA	NA	False	NA	NA	NA	101504914	101515321	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_101505023_101509595_101509672_101513305_101513493_101515034
ENSMUSG00000035212.15_101504915_101515705_1	chr4	+	1042	4	FSM	ENSMUSG00000035212.15	ENSMUST00000030254.15	1898	4	0	856	0	-856	multi-exon	FALSE	canonical	3	539	junction_3	48.8011839564939	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTGCCCCCTGCTGTGA	8215	False	NA	NA	False	NA	NA	NA	101504914	101515705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_101505023_101509595_101509672_101513305_101513493_101515034
ENSMUSG00000035212.15_101504915_101516561_1	chr4	+	974	5	NNC	ENSMUSG00000035212.15	novel	1898	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	259.519267107473	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGTTGCATTTCATAAA	8215	False	NA	8	True	AATAAA	-20	NA	101504914	101516561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_101505023_101509595_101509672_101513305_101513493_101515034_101515195_101516118
ENSMUSG00000035212.15_101504915_101516561_2	chr4	+	787	4	NNC	ENSMUSG00000035212.15	novel	1898	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	283.144643051725	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGTTGCATTTCATAAA	8215	False	NA	8	True	AATAAA	-20	NA	101504914	101516561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_101505023_101509595_101509672_101515034_101515195_101516118
ENSMUSG00000035212.15_101504990_101510156_1	chr4	+	594	2	ISM	ENSMUSG00000035212.15	ENSMUST00000106927.2	1754	4	0	6405	0	-6405	5prime_fragment	FALSE	canonical	3	622	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGATACATTCATTTAA	8290	False	NA	NA	False	NA	NA	NA	101504989	101510156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_101505023_101509595
ENSMUSG00000035215.10_80688667_80691043_1	chr10	-	453	4	NNC	ENSMUSG00000035215.10	novel	468	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2103.14309757774	23091	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTCCCTTCCTGCTCT	NA	False	NA	-21	True	AATAAA	-17	NA	80691043	80688666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_80688935_80689591_80689664_80690451_80690536_80691014
ENSMUSG00000035215.10_80688667_80691043_2	chr10	-	1589	2	FSM	ENSMUSG00000035215.10	ENSMUST00000218931.2	785	2	-16	-788	0	0	multi-exon	FALSE	canonical	3	4552	junction_1	0	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTCCCTTCCTGCTCT	NA	False	NA	-21	True	AATAAA	-17	NA	80691043	80688666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80689664_80690451
ENSMUSG00000035215.10_80688667_80691043_3	chr10	-	446	4	NNC	ENSMUSG00000035215.10	novel	468	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1879.46469920442	9833	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTCCCTTCCTGCTCT	NA	False	NA	-21	True	AATAAA	-17	NA	80691043	80688666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_80688921_80689591_80689664_80690451_80690543_80691014
ENSMUSG00000035215.10_80688667_80691043_4	chr10	-	445	4	NNC	ENSMUSG00000035215.10	novel	468	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2103.14309757774	16976	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTCCCTTCCTGCTCT	NA	False	NA	-21	True	AATAAA	-17	NA	80691043	80688666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_80688935_80689591_80689664_80690451_80690528_80691014
ENSMUSG00000035215.10_80688667_80691043_5	chr10	-	449	4	NNC	ENSMUSG00000035215.10	novel	468	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1879.46469920442	19925	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTCCCTTCCTGCTCT	NA	False	NA	-21	True	AATAAA	-17	NA	80691043	80688666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_80688935_80689602_80689664_80690451_80690543_80691014
ENSMUSG00000035215.10_80688767_80691043_1	chr10	-	349	4	NNC	ENSMUSG00000035215.10	novel	468	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1879.46469920442	487	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGATCTTCCTTCTATGGG	NA	False	NA	NA	False	NA	NA	NA	80691043	80688766	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_80688935_80689602_80689664_80690451_80690543_80691014
ENSMUSG00000035227.8_99488111_99508083_1	chr7	-	1473	5	NNC	ENSMUSG00000035227.8	novel	1610	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	1001.95518238093	7002	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGGAGTCTTGAAAGAAG	NA	False	NA	-3	True	AATAAA	-18	NA	99508083	99488110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_99489091_99493906_99494042_99497505_99497658_99498173_99498267_99507970
ENSMUSG00000035227.8_99488111_99508083_2	chr7	-	1473	5	FSM	ENSMUSG00000035227.8	ENSMUST00000036274.8	2909	5	101	1335	0	0	multi-exon	FALSE	canonical	2	1599	junction_2	370.901856964885	11595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGGAGTCTTGAAAGAAG	NA	False	NA	-3	True	AATAAA	-18	NA	99508083	99488110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99507970
ENSMUSG00000035227.8_99488111_99508184_1	chr7	-	1574	5	FSM	ENSMUSG00000035227.8	ENSMUST00000036274.8	2909	5	0	1335	0	0	multi-exon	FALSE	canonical	2	1599	junction_2	370.901856964885	15637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGGAGTCTTGAAAGAAG	NA	False	NA	-3	True	AATAAA	-18	NA	99508184	99488110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99507970
ENSMUSG00000035227.8_99488888_99508083_1	chr7	-	696	5	FSM	ENSMUSG00000035227.8	ENSMUST00000036274.8	2909	5	101	2112	0	0	multi-exon	FALSE	canonical	2	1599	junction_2	370.901856964885	4097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTCTGCTGGATCATACG	NA	False	NA	-2	True	AATAAA	-21	NA	99508083	99488887	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99507970
ENSMUSG00000035227.8_99488888_99508083_2	chr7	-	696	5	NNC	ENSMUSG00000035227.8	novel	2909	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1001.95518238093	1073	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTCTGCTGGATCATACG	NA	False	NA	-2	True	AATAAA	-21	NA	99508083	99488887	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_99489091_99493906_99494042_99497505_99497658_99498173_99498267_99507970
ENSMUSG00000035227.8_99488888_99508083_3	chr7	-	699	5	NNC	ENSMUSG00000035227.8	novel	2909	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1043.87391480006	871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTCTGCTGGATCATACG	NA	False	NA	-2	True	AATAAA	-21	NA	99508083	99488887	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_99489091_99493906_99494053_99497513_99497667_99498182_99498267_99507970
ENSMUSG00000035227.8_99488888_99508184_1	chr7	-	797	5	FSM	ENSMUSG00000035227.8	ENSMUST00000036274.8	2909	5	0	2112	0	0	multi-exon	FALSE	canonical	2	1599	junction_2	370.901856964885	7915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTCTGCTGGATCATACG	NA	False	NA	-2	True	AATAAA	-21	NA	99508184	99488887	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99507970
ENSMUSG00000035227.8_99488888_99508184_2	chr7	-	797	5	NNC	ENSMUSG00000035227.8	novel	2909	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1001.95518238093	4256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTCTGCTGGATCATACG	NA	False	NA	-2	True	AATAAA	-21	NA	99508184	99488887	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_99489091_99493906_99494042_99497505_99497658_99498173_99498267_99507970
ENSMUSG00000035234.19_100953058_100968816_2	chr5	-	1661	10	NNC	ENSMUSG00000035234.19	novel	1668	10	NA	NA	-3	0	at_least_one_novel_splicesite	TRUE	canonical	3	24	junction_7	57.5019054971439	337	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTAATATCTTATTTTT	NA	False	NA	-3	True	AATAAA	-19	NA	100968816	100953057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_100953318_100953763_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963078_100965827_100965865_100966382_100966474_100968696
ENSMUSG00000035234.19_100953058_100968816_3	chr5	-	2095	10	NNC	ENSMUSG00000035234.19	novel	2139	9	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	58.957193091971	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTAATATCTTATTTTT	NA	False	NA	-3	True	AATAAA	-19	NA	100968816	100953057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_100953549_100953577_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
ENSMUSG00000035242.16_80662516_80665004_1	chr10	+	1003	4	NIC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	-114	intron_retention	FALSE	canonical	3	7082	junction_2	297.278021761149	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTATTGCTGTTTAAG	NA	False	NA	NA	False	AATAAA	-14	NA	80662515	80665004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544
ENSMUSG00000035242.16_80662516_80665004_2	chr10	+	928	5	NNC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	-114	intron_retention	FALSE	non_canonical	0	0	junction_4	3186.42134690314	7652	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTATTGCTGTTTAAG	NA	False	NA	NA	False	AATAAA	-14	NA	80662515	80665004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544_80664631_80664705
ENSMUSG00000035242.16_80662516_80665004_3	chr10	+	917	5	NNC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	-114	intron_retention	FALSE	canonical	1	2	junction_4	3185.55815360511	829	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTATTGCTGTTTAAG	NA	False	NA	NA	False	AATAAA	-14	NA	80662515	80665004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544_80664619_80664704
ENSMUSG00000035242.16_80662516_80665004_4	chr10	+	927	5	NNC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	-114	intron_retention	FALSE	canonical	0	0	junction_2	3129.74535705383	2038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTATTGCTGTTTAAG	NA	False	NA	NA	False	AATAAA	-14	NA	80662515	80665004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80662740_80664070_80664221_80664300_80664468_80664544_80664631_80664704
ENSMUSG00000035242.16_80662516_80665004_5	chr10	+	907	5	NIC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	-114	intron_retention	FALSE	canonical	3	460	junction_4	2987.93005272881	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTATTGCTGTTTAAG	NA	False	NA	NA	False	AATAAA	-14	NA	80662515	80665004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544_80664631_80664726
ENSMUSG00000035242.16_80662516_80665119_1	chr10	+	1032	5	NNC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	0	intron_retention	FALSE	canonical	1	2	junction_4	3185.55815360511	6126	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	14	True	AATAAA	-14	NA	80662515	80665119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544_80664619_80664704
ENSMUSG00000035242.16_80662516_80665119_2	chr10	+	1122	4	NIC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	6566	junction_3	484.21023900322	5983	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	14	True	AATAAA	-14	NA	80662515	80665119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_80662740_80664070_80664468_80664544_80664631_80664704
ENSMUSG00000035242.16_80662516_80665119_3	chr10	+	1043	5	NNC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_4	3186.42134690314	33349	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	14	True	AATAAA	-14	NA	80662515	80665119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544_80664631_80664705
ENSMUSG00000035242.16_80662516_80665119_4	chr10	+	1022	5	NIC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	460	junction_4	2987.93005272881	4669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	14	True	AATAAA	-14	NA	80662515	80665119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544_80664631_80664726
ENSMUSG00000035242.16_80662516_80665119_5	chr10	+	1042	5	NNC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_2	3129.74535705383	17061	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	14	True	AATAAA	-14	NA	80662515	80665119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80662740_80664070_80664221_80664300_80664468_80664544_80664631_80664704
ENSMUSG00000035242.16_80662516_80665119_6	chr10	+	1118	4	NIC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	7082	junction_2	297.278021761149	3002	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	14	True	AATAAA	-14	NA	80662515	80665119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544
ENSMUSG00000035266.17_100910017_100914093_1	chr5	-	749	3	NNC	ENSMUSG00000035266.17	novel	442	3	NA	NA	586	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	46.5	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGCGCTCTGGGTGATTA	2453	False	NA	-1	True	ATTAAA	-20	NA	100914093	100910016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_100910503_100912806_100912942_100913965
ENSMUSG00000035275.15_101009564_101014266_1	chr4	+	1744	5	NIC	ENSMUSG00000035275.15	novel	4045	12	NA	NA	82888	4699	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTCCTATTTAGGAGAA	6572	False	NA	NA	False	NA	NA	NA	101009563	101014266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_101010788_101011734_101011846_101012212_101012331_101013589_101013763_101014148
ENSMUSG00000035278.10_80631933_80634074_1	chr10	-	934	5	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	-46	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_4	548.522105297498	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634074	80631932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_80632357_80632424_80632489_80632565_80632657_80633356_80633552_80633914
ENSMUSG00000035278.10_80631933_80634074_2	chr10	-	806	5	FSM	ENSMUSG00000035278.10	ENSMUST00000219378.2	533	5	54	-327	-46	0	multi-exon	FALSE	canonical	3	76	junction_4	475.904664822693	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634074	80631932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633914
ENSMUSG00000035278.10_80631933_80634074_3	chr10	-	839	5	NNC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	466.736810204638	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634074	80631932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_80632357_80632536_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUSG00000035278.10_80631933_80634074_4	chr10	-	951	5	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	-46	0	intron_retention	FALSE	canonical	3	953	junction_4	141.850934082226	666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634074	80631932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_80632357_80632424_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUSG00000035278.10_80631933_80634074_5	chr10	-	838	6	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	-46	0	combination_of_known_junctions	FALSE	canonical	3	211	junction_2	375.955529285047	942	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634074	80631932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_80632357_80632424_80632453_80632565_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUSG00000035278.10_80631933_80634074_6	chr10	-	874	6	FSM	ENSMUSG00000035278.10	ENSMUST00000036805.7	1260	6	386	0	-46	0	multi-exon	FALSE	canonical	3	943	junction_2	140.821021158064	3968	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634074	80631932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUSG00000035278.10_80631933_80634074_7	chr10	-	739	4	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	-46	0	combination_of_known_splicesites	FALSE	canonical	3	46	junction_3	509.183878596153	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634074	80631932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_80632357_80632424_80632489_80632565_80632657_80633914
ENSMUSG00000035278.10_80631933_80634394_1	chr10	-	1158	6	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	211	junction_2	375.955529285047	1646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634394	80631932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_80632357_80632424_80632453_80632565_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUSG00000035278.10_80631933_80634394_2	chr10	-	1126	5	FSM	ENSMUSG00000035278.10	ENSMUST00000219378.2	533	5	-266	-327	0	0	multi-exon	FALSE	canonical	3	76	junction_4	475.904664822693	911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634394	80631932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633914
ENSMUSG00000035284.11_67747678_67768173_1	chr9	+	422	5	ISM	ENSMUSG00000035284.11	ENSMUST00000217386.2	2669	27	-16	44919	0	-44919	5prime_fragment	FALSE	canonical	2	3	junction_3	1.4790199457749	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTTATTAATTAAGCTC	NA	False	NA	NA	False	NA	NA	NA	67747677	67768173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_67747809_67759772_67759817_67760977_67761021_67766071_67766168_67768065
ENSMUSG00000035293.14_51395071_51412108_1	chr12	+	1239	11	ISM	ENSMUSG00000035293.14	ENSMUST00000054308.13	6803	15	227	11661	0	1792	5prime_fragment	FALSE	canonical	3	106	junction_10	22.9357799082569	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAGACATTATACATCAAC	NA	False	NA	NA	False	ATTAAA	-8	NA	51395070	51412108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_51395228_51398187_51398229_51400386_51400485_51400582_51400685_51402663_51402789_51403809_51403976_51406524_51406632_51407713_51407831_51409968_51410094_51410199_51410330_51412037
ENSMUSG00000035295.11_38891592_38895137_1	chr2	+	441	4	NNC	ENSMUSG00000035295.11	novel	1194	9	NA	NA	3248	-1043	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	38159	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGGAAAGGGCGGGGCC	NA	False	NA	NA	False	NA	NA	NA	38891591	38895137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_38891772_38894118_38894201_38894743_38894881_38895095
ENSMUSG00000035295.11_38891592_38895137_2	chr2	+	447	4	NIC	ENSMUSG00000035295.11	novel	1194	9	NA	NA	3248	-1043	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	134190	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGGAAAGGGCGGGGCC	NA	False	NA	NA	False	NA	NA	NA	38891591	38895137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_38891778_38894118_38894201_38894743_38894881_38895095
ENSMUSG00000035297.15_100666309_100695646_1	chr5	+	1592	10	NNC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	435.859927663934	2407	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTACTTGGTTTTTAAT	5407	False	NA	20	True	AATAAA	-22	NA	100666308	100695646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695175
ENSMUSG00000035297.15_100666309_100695646_2	chr5	+	1591	10	NNC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	435.871484060708	1698	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTACTTGGTTTTTAAT	5407	False	NA	20	True	AATAAA	-22	NA	100666308	100695646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689409_100689519_100691704_100691790_100695169
ENSMUSG00000035297.15_100666309_100695646_3	chr5	+	1397	8	NIC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_7	487.320872375749	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTACTTGGTTTTTAAT	5407	False	NA	20	True	AATAAA	-22	NA	100666308	100695646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100695169
ENSMUSG00000035297.15_100666309_100695646_4	chr5	+	1518	9	NIC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_1	442.714284273729	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTACTTGGTTTTTAAT	5407	False	NA	20	True	AATAAA	-22	NA	100666308	100695646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_100666417_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
ENSMUSG00000035297.15_100666309_100695646_5	chr5	+	1589	10	NNC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	434.989768575575	2577	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTACTTGGTTTTTAAT	5407	False	NA	20	True	AATAAA	-22	NA	100666308	100695646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691713_100691790_100695169
ENSMUSG00000035297.15_100666309_100695646_6	chr5	+	1603	10	NNC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_4	427.131112955169	2264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTACTTGGTTTTTAAT	5407	False	NA	20	True	AATAAA	-22	NA	100666308	100695646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678022_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
ENSMUSG00000035297.15_100666309_100695646_7	chr5	+	311	3	NNC	ENSMUSG00000035297.15	novel	2389	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	651	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTACTTGGTTTTTAAT	5407	False	NA	20	True	AATAAA	-22	NA	100666308	100695646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_100666417_100675839_100675870_100695473
ENSMUSG00000035325.17_100555541_100564093_1	chr5	-	564	2	ISM	ENSMUSG00000035325.17	ENSMUST00000094578.11	4228	28	0	46033	0	0	5prime_fragment	FALSE	canonical	3	798	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCAAAAAAAAAAAAATTCTA	8108	False	NA	NA	False	TTTAAA	-38	NA	100564093	100555540	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_100555973_100563961
ENSMUSG00000035367.10_58538956_58550279_1	chr13	+	2796	15	NNC	ENSMUSG00000035367.10	novel	3594	3	NA	NA	-11106	-4591	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCGCTGTCGCCTGTAGC	NA	False	NA	NA	False	NA	NA	NA	58538955	58550279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000035367.10_58538956_58550279_2	chr13	+	2736	15	NNC	ENSMUSG00000035367.10	novel	3594	3	NA	NA	-11106	-4591	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCGCTGTCGCCTGTAGC	NA	False	NA	NA	False	NA	NA	NA	58538955	58550279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000035367.10_58539053_58550330_1	chr13	+	2750	15	NNC	ENSMUSG00000035367.10	novel	3594	3	NA	NA	-11009	-4540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGGGGGAGGGGAGTAG	NA	False	NA	NA	False	NA	NA	NA	58539052	58550330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000035367.10_58539053_58550330_2	chr13	+	2690	15	NNC	ENSMUSG00000035367.10	novel	3594	3	NA	NA	-11009	-4540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGGGGGAGGGGAGTAG	NA	False	NA	NA	False	NA	NA	NA	58539052	58550330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000035367.10_58539764_58550279_1	chr13	+	1917	15	NNC	ENSMUSG00000035367.10	novel	3594	3	NA	NA	-10298	-4591	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCGCTGTCGCCTGTAGC	NA	False	NA	NA	False	NA	NA	NA	58539763	58550279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_58540231_58541009_58541180_58541505_58541589_58541884_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000035367.10_58539764_58550330_1	chr13	+	2039	15	NNC	ENSMUSG00000035367.10	novel	3594	3	NA	NA	-10298	-4540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGGGGGAGGGGAGTAG	NA	False	NA	NA	False	NA	NA	NA	58539763	58550330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000035367.10_58539764_58550330_2	chr13	+	1979	15	NNC	ENSMUSG00000035367.10	novel	3594	3	NA	NA	-10298	-4540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGGGGGAGGGGAGTAG	NA	False	NA	NA	False	NA	NA	NA	58539763	58550330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000035367.10_58539764_58550330_3	chr13	+	2034	15	NNC	ENSMUSG00000035367.10	novel	3594	3	NA	NA	-10298	-4540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGGGGGAGGGGAGTAG	NA	False	NA	NA	False	NA	NA	NA	58539763	58550330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544065_58544636_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000035367.10_58539764_58550330_4	chr13	+	2024	15	NNC	ENSMUSG00000035367.10	novel	3594	3	NA	NA	-10298	-4540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGGGGGAGGGGAGTAG	NA	False	NA	NA	False	NA	NA	NA	58539763	58550330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_58540291_58541009_58541180_58541505_58541574_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000035367.10_58539764_58550330_5	chr13	+	2028	15	NNC	ENSMUSG00000035367.10	novel	3594	3	NA	NA	-10298	-4540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1855	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGGGGGAGGGGAGTAG	NA	False	NA	NA	False	NA	NA	NA	58539763	58550330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_58540291_58541009_58541180_58541505_58541589_58541884_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUSG00000035367.10_58550514_58557910_1	chr13	+	2366	3	FSM	ENSMUSG00000035367.10	ENSMUST00000042450.10	3855	3	437	1052	0	0	multi-exon	FALSE	canonical	3	159	junction_1	108.5	1006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGTGAAAGAATGTTTATA	NA	False	NA	20	True	AATAAA	-33	NA	58550513	58557910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_58550604_58554815_58554905_58555723
ENSMUSG00000035376.11_34842798_34926895_1	chr16	+	944	6	NNC	ENSMUSG00000035376.11	novel	3598	7	NA	NA	0	-2652	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	574.173980601699	200	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGGCCTGGGATTTTATA	NA	False	NA	17	True	NA	NA	NA	34842797	34926895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_34843006_34846194_34846330_34895975_34896065_34920125_34920248_34922315_34922495_34926684
ENSMUSG00000035376.11_34842798_34926895_2	chr16	+	927	6	NIC	ENSMUSG00000035376.11	novel	3598	7	NA	NA	0	-2652	combination_of_known_splicesites	FALSE	canonical	3	32	junction_2	561.414428029776	173	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGGCCTGGGATTTTATA	NA	False	NA	17	True	NA	NA	NA	34842797	34926895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_34843006_34846194_34846313_34895975_34896065_34920125_34920248_34922315_34922495_34926684
ENSMUSG00000035376.11_34842798_34926895_3	chr16	+	953	6	NNC	ENSMUSG00000035376.11	novel	3598	7	NA	NA	0	-2652	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	574.173980601699	281	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGGCCTGGGATTTTATA	NA	False	NA	17	True	NA	NA	NA	34842797	34926895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_34843006_34846194_34846313_34895949_34896065_34920125_34920248_34922315_34922495_34926684
ENSMUSG00000035376.11_34842798_34926948_1	chr16	+	997	6	NNC	ENSMUSG00000035376.11	novel	3598	7	NA	NA	0	-2599	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	574.173980601699	2535	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTTACATAAAGCATCC	NA	False	NA	70	True	NA	NA	NA	34842797	34926948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_34843006_34846194_34846330_34895975_34896065_34920125_34920248_34922315_34922495_34926684
ENSMUSG00000035376.11_34842798_34926948_2	chr16	+	1006	6	NNC	ENSMUSG00000035376.11	novel	3598	7	NA	NA	0	-2599	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	574.173980601699	6687	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTTACATAAAGCATCC	NA	False	NA	70	True	NA	NA	NA	34842797	34926948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_34843006_34846194_34846313_34895949_34896065_34920125_34920248_34922315_34922495_34926684
ENSMUSG00000035376.11_34842798_34926948_3	chr16	+	993	7	NNC	ENSMUSG00000035376.11	novel	3598	7	NA	NA	0	-2599	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	516.44091842361	11174	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTTACATAAAGCATCC	NA	False	NA	70	True	NA	NA	NA	34842797	34926948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_34843006_34846194_34846313_34869089_34869109_34895975_34896065_34920131_34920248_34922315_34922495_34926684
ENSMUSG00000035376.11_34842798_34926948_4	chr16	+	980	6	NIC	ENSMUSG00000035376.11	novel	3598	7	NA	NA	0	-2599	combination_of_known_splicesites	FALSE	canonical	3	32	junction_2	561.414428029776	892	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTTACATAAAGCATCC	NA	False	NA	70	True	NA	NA	NA	34842797	34926948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_34843006_34846194_34846313_34895975_34896065_34920125_34920248_34922315_34922495_34926684
ENSMUSG00000035378.18_100550043_100648102_1	chr6	-	1947	11	NNC	ENSMUSG00000035378.18	novel	6816	11	NA	NA	-2	0	at_least_one_novel_splicesite	TRUE	canonical	3	25	junction_4	57.4063585328315	510	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGGTGTAAATAATTAGA	NA	False	NA	-2	True	AATAAA	-18	NA	100648102	100550042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_100550750_100588696_100588813_100607838_100607968_100609199_100609254_100613955_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
ENSMUSG00000035390.17_4710252_4718980_1	chr7	+	1344	6	ISM	ENSMUSG00000035390.17	ENSMUST00000048248.9	2996	19	16325	16	-1725	0	3prime_fragment	TRUE	canonical	3	7	junction_3	4.35430821141545	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCCTTGATCAGGGACAGC	NA	False	NA	-12	True	NA	NA	NA	4710251	4718980	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_4710485_4710896_4710946_4711047_4711172_4711816_4712016_4713420_4713511_4718331
ENSMUSG00000035427.19_85293860_85299825_1	chrX	-	2183	4	NNC	ENSMUSG00000035427.19	novel	2403	3	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	13.589211407093	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAGATTTTATTCTTT	NA	False	NA	NA	False	AATAAA	-12	NA	85299825	85293859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_85294575_85294794_85296089_85298945_85299028_85299733
ENSMUSG00000035437.16_37342257_37382091_1	chr2	+	1466	10	ISM	ENSMUSG00000035437.16	ENSMUST00000066055.10	4247	19	0	52883	0	-1867	5prime_fragment	FALSE	canonical	3	120	junction_1	49.1884760166394	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTCACCTGGGTGCCGA	NA	False	NA	NA	False	NA	NA	NA	37342256	37382091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_37342314_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921
ENSMUSG00000035439.14_71703239_71725002_1	chr8	-	1964	11	FSM	ENSMUSG00000035439.14	ENSMUST00000110071.3	1452	11	18	-530	0	530	multi-exon	FALSE	canonical	3	71	junction_7	129.467524885587	1958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTCTTGGTCATGAAG	714	False	NA	-1	True	NA	NA	NA	71725002	71703238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709196_71709999_71710070_71715695_71715749_71721869_71721929_71724927
ENSMUSG00000035439.14_71703769_71725002_1	chr8	-	1371	10	NIC	ENSMUSG00000035439.14	novel	2013	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_4	154.696676526663	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	714	False	NA	-9	True	NA	NA	NA	71725002	71703768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708651_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71721869_71721929_71724927
ENSMUSG00000035439.14_71703769_71725086_1	chr8	-	1459	10	NIC	ENSMUSG00000035439.14	novel	1452	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_9	189.752730587552	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	630	False	NA	-9	True	NA	NA	NA	71725086	71703768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709196_71709999_71710070_71715695_71715749_71724927
ENSMUSG00000035439.14_71703769_71725150_1	chr8	-	1582	11	FSM	ENSMUSG00000035439.14	ENSMUST00000110071.3	1452	11	-130	0	-28	0	multi-exon	FALSE	canonical	3	71	junction_7	129.467524885587	2358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	566	False	NA	-9	True	NA	NA	NA	71725150	71703768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709196_71709999_71710070_71715695_71715749_71721869_71721929_71724927
ENSMUSG00000035439.14_71703769_71725150_2	chr8	-	1519	10	NIC	ENSMUSG00000035439.14	novel	2013	11	NA	NA	-28	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_4	154.696676526663	631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	566	False	NA	-9	True	NA	NA	NA	71725150	71703768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708651_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71721869_71721929_71724927
ENSMUSG00000035443.11_26911016_26917230_1	chr9	+	781	5	ISM	ENSMUSG00000035443.11	ENSMUST00000039161.10	918	8	-2	1400	0	3	5prime_fragment	FALSE	canonical	3	529	junction_1	46.8634985889871	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATCATTGAGTTTTAGAA	NA	False	NA	6	True	AATAAA	-20	NA	26911015	26917230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852
ENSMUSG00000035443.11_26911016_26918632_1	chr9	+	790	7	NNC	ENSMUSG00000035443.11	novel	1107	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	220.761560663687	3130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAAGTGTTTTCTTCTAA	NA	False	NA	36	True	AATAAA	-17	NA	26911015	26918632	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_26911081_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
ENSMUSG00000035443.11_26911016_26918632_2	chr9	+	956	6	NIC	ENSMUSG00000035443.11	novel	1107	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	323	junction_5	122.182486470034	2241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAAGTGTTTTCTTCTAA	NA	False	NA	36	True	AATAAA	-17	NA	26911015	26918632	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
ENSMUSG00000035443.11_26911016_26918632_3	chr9	+	941	8	NNC	ENSMUSG00000035443.11	novel	1107	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	231.197945051245	1734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAAGTGTTTTCTTCTAA	NA	False	NA	36	True	AATAAA	-17	NA	26911015	26918632	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_26911081_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096_26918248_26918453
ENSMUSG00000035443.11_26911016_26918632_4	chr9	+	757	7	NIC	ENSMUSG00000035443.11	novel	1107	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_3	210.647744403357	2888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAAGTGTTTTCTTCTAA	NA	False	NA	36	True	AATAAA	-17	NA	26911015	26918632	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_26911062_26911246_26911353_26914892_26915061_26916441_26916511_26916852_26916946_26917647_26917744_26918453
ENSMUSG00000035458.16_4521304_4524214_1	chr7	-	667	4	ISM	ENSMUSG00000035458.16	ENSMUST00000098859.10	912	8	1313	0	-648	0	3prime_fragment	FALSE	canonical	3	20	junction_3	2.49443825784929	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTGTGTGTCTGCTAAC	8230	False	NA	-2	True	AATAAA	-17	NA	4524214	4521303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_4521451_4522396_4522574_4523436_4523527_4523961
ENSMUSG00000035458.16_4521304_4525824_1	chr7	-	947	8	NNC	ENSMUSG00000035458.16	novel	912	8	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	10.842094834863	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTGTGTGTCTGCTAAC	6620	False	NA	-2	True	AATAAA	-17	NA	4525824	4521303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_4521451_4522396_4522574_4523436_4523527_4523961_4524094_4524343_4524386_4524814_4524902_4525299_4525441_4525693
ENSMUSG00000035478.15_80228373_80231206_1	chr10	-	1320	4	FSM	ENSMUSG00000035478.15	ENSMUST00000142997.8	1118	4	-202	0	-46	0	multi-exon	FALSE	canonical	3	1197	junction_3	65.3214274866134	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80231206	80228372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897
ENSMUSG00000035478.15_80228373_80235107_1	chr10	-	1385	7	FSM	ENSMUSG00000035478.15	ENSMUST00000092295.10	1662	7	277	0	149	0	multi-exon	FALSE	canonical	3	303	junction_6	355.847657791302	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235107	80228372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80234955
ENSMUSG00000035478.15_80228373_80235107_2	chr10	-	1289	7	FSM	ENSMUSG00000035478.15	ENSMUST00000105349.8	1566	7	277	0	149	0	multi-exon	FALSE	canonical	3	918	junction_6	141.458376288653	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235107	80228372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80235051
ENSMUSG00000035478.15_80228373_80235256_1	chr10	-	1534	7	FSM	ENSMUSG00000035478.15	ENSMUST00000092295.10	1662	7	128	0	0	0	multi-exon	FALSE	canonical	3	303	junction_6	355.847657791302	605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235256	80228372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80234955
ENSMUSG00000035478.15_80228373_80235256_2	chr10	-	1438	7	FSM	ENSMUSG00000035478.15	ENSMUST00000105349.8	1566	7	128	0	0	0	multi-exon	FALSE	canonical	3	918	junction_6	141.458376288653	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235256	80228372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80235051
ENSMUSG00000035495.16_46124582_46138417_1	chr4	-	1122	5	ISM	ENSMUSG00000035495.16	ENSMUST00000107770.2	2700	10	21	8850	-4	-1177	5prime_fragment	FALSE	canonical	3	38	junction_4	69.4694177318336	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGGTTCTTTCAGCTGA	14	True	NA	NA	False	AATAAA	-1	NA	46138417	46124581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_46125026_46129226_46129348_46131842_46132157_46135386_46135592_46138379
ENSMUSG00000035495.16_46135105_46138455_1	chr4	-	566	2	ISM	ENSMUSG00000035495.16	ENSMUST00000160008.2	1547	6	-42	11700	0	397	5prime_fragment	FALSE	canonical	3	160	junction_1	0	56	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAGAAAGAAAA	-24	True	NA	NA	False	NA	NA	NA	46138455	46135104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_46135595_46138379
ENSMUSG00000035504.17_80165979_80172275_1	chr10	+	1935	5	FSM	ENSMUSG00000035504.17	ENSMUST00000105357.2	2127	5	192	0	0	0	multi-exon	FALSE	canonical	3	489	junction_4	47.9921868641136	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGTGTGTCCGCTAAGCTG	7219	False	NA	18	True	AATAAA	-19	NA	80165978	80172275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799_80169969_80170943
ENSMUSG00000035505.15_90362583_90371634_1	chr5	-	1110	6	FSM	ENSMUSG00000035505.15	ENSMUST00000118816.6	1307	6	197	0	164	0	multi-exon	FALSE	canonical	3	156	junction_3	54.1833922895199	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGTGAGATAATTTC	NA	False	NA	-4	True	AATAAA	-16	NA	90371634	90362582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_90363035_90365375_90365484_90366770_90366896_90367218_90367383_90370089_90370191_90371474
ENSMUSG00000035505.15_90362583_90371831_1	chr5	-	1147	5	NIC	ENSMUSG00000035505.15	novel	1307	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	3	junction_3	123.049532709393	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGTGAGATAATTTC	NA	False	NA	-4	True	AATAAA	-16	NA	90371831	90362582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_90363035_90365375_90365484_90366770_90366896_90370089_90370195_90371474
ENSMUSG00000035505.15_90362691_90371831_1	chr5	-	1199	6	FSM	ENSMUSG00000035505.15	ENSMUST00000118816.6	1307	6	0	108	0	-102	multi-exon	FALSE	canonical	3	156	junction_3	54.1833922895199	845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGGATGCCTGGCCTTAT	NA	False	NA	-112	True	ATTAAA	-35	NA	90371831	90362690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_90363035_90365375_90365484_90366770_90366896_90367218_90367383_90370089_90370191_90371474
ENSMUSG00000035509.18_56670326_56675280_1	chr13	+	888	4	FSM	ENSMUSG00000035509.18	ENSMUST00000124981.2	3507	4	0	2619	0	0	multi-exon	FALSE	canonical	2	8	junction_3	0.816496580927726	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTTTCTCACTGGGCTG	NA	False	NA	NA	False	AATAAA	-26	NA	56670325	56675280	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_56670436_56671322_56671417_56673454_56673586_56674727
ENSMUSG00000035521.14_25453395_25459100_2	chr17	-	1140	11	FSM	ENSMUSG00000035521.14	ENSMUST00000038973.7	1234	11	-10	104	-2	-104	multi-exon	FALSE	canonical	3	143	junction_3	15.4275727189989	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCCATACTGATAAAAAATA	NA	False	NA	-19	True	AATAAA	-20	NA	25459100	25453394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25453697_25453781_25453864_25453953_25454086_25454155_25454239_25454318_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
ENSMUSG00000035530.14_100210812_100212360_1	chr11	+	659	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	101	562	101	1	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	71046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGTAGTCTTGAAGTC	4058	False	NA	0	True	AATAAA	-14	NA	100210811	100212360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
ENSMUSG00000035530.14_100210812_100212922_1	chr11	+	1221	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	101	0	101	0	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	85499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGATGTCCAGATTGCAC	4058	False	NA	21	True	AATAAA	-17	NA	100210811	100212922	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
ENSMUSG00000035530.14_100211344_100212360_1	chr11	+	632	3	FSM	ENSMUSG00000035530.14	ENSMUST00000139846.2	447	3	0	-185	0	1	multi-exon	FALSE	canonical	3	12221	junction_1	273.5	7333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGTAGTCTTGAAGTC	4590	False	NA	0	True	AATAAA	-14	NA	100211343	100212360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_100211656_100211773_100211876_100212142
ENSMUSG00000035547.15_97772868_97774510_1	chr7	-	457	2	ISM	ENSMUSG00000035547.15	ENSMUST00000107112.2	2232	13	37039	0	36907	0	3prime_fragment	FALSE	canonical	3	191	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTAATGCAGTTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	97774510	97772867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_97773263_97774448
ENSMUSG00000035557.10_100147043_100149360_1	chr11	-	779	5	ISM	ENSMUSG00000035557.10	ENSMUST00000080893.7	1551	8	2495	0	2495	0	3prime_fragment	FALSE	canonical	3	34	junction_4	2.1650635094611	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGGACTGGTGTGTGTG	NA	False	NA	48	True	AATAAA	-16	NA	100149360	100147042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_100147323_100148145_100148172_100148258_100148480_100148568_100148695_100149234
ENSMUSG00000035559.10_71211295_71213592_1	chr8	-	1021	5	NNC	ENSMUSG00000035559.10	novel	980	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	72	junction_3	276.99311814556	2113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGCGTGTGGGTGGGTT	NA	False	NA	-2	True	ATTAAA	-17	NA	71213592	71211294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_71211671_71211754_71211884_71212036_71212155_71213013_71213185_71213365
ENSMUSG00000035560.6_65272495_65275229_1	chr12	+	2025	2	FSM	ENSMUSG00000035560.6	ENSMUST00000046331.5	2228	2	204	-1	0	1	multi-exon	FALSE	canonical	3	6	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATGACCTCTTTGTTTCT	NA	False	NA	NA	False	AATAAA	-20	NA	65272494	65275229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_65274272_65274981
ENSMUSG00000035575.12_79825628_79853217_1	chr11	-	3029	19	FSM	ENSMUSG00000035575.12	ENSMUST00000043152.6	3877	19	-1	849	-1	-849	multi-exon	FALSE	canonical	3	409	junction_5	33.8632416611651	711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATACTGGGTATTTGTTTG	NA	False	NA	-11	True	AATAAA	-16	NA	79853217	79825627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
ENSMUSG00000035575.12_79826676_79853217_1	chr11	-	1981	19	FSM	ENSMUSG00000035575.12	ENSMUST00000043152.6	3877	19	-1	1897	-1	0	multi-exon	FALSE	canonical	3	409	junction_5	33.8632416611651	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTAACATACTTTTACT	NA	False	NA	-103	True	NA	NA	NA	79853217	79826675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
ENSMUSG00000035578.17_32836990_32876560_1	chr16	-	1681	11	FSM	ENSMUSG00000035578.17	ENSMUST00000115100.9	5618	11	0	3937	0	0	multi-exon	TRUE	canonical	2	4	junction_9	25.6242073048124	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCACCTAGCATCATGTG	1172	False	NA	2	True	ATTAAA	-29	NA	32876560	32836989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_32837434_32839810_32839913_32840883_32841016_32849384_32849460_32851144_32851307_32855910_32855993_32861133_32861263_32865889_32866072_32870221_32870484_32873993_32874065_32876520
ENSMUSG00000035585.17_3696601_3704011_1	chr7	+	1540	5	FSM	ENSMUSG00000035585.17	ENSMUST00000108630.8	1779	5	227	12	0	0	multi-exon	FALSE	canonical	3	289	junction_1	380.27448967818	752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2012	False	NA	6	True	AATAAA	-16	NA	3696600	3704011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3703526
ENSMUSG00000035585.17_3696764_3704011_1	chr7	+	1377	5	FSM	ENSMUSG00000035585.17	ENSMUST00000108630.8	1779	5	390	12	0	0	multi-exon	FALSE	canonical	3	289	junction_1	380.27448967818	685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2175	False	NA	6	True	AATAAA	-16	NA	3696763	3704011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3703526
ENSMUSG00000035585.17_3696764_3704011_2	chr7	+	1353	5	NIC	ENSMUSG00000035585.17	novel	1365	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	477.15458710988	499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2175	False	NA	6	True	AATAAA	-16	NA	3696763	3704011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_3696865_3697596_3697844_3697976_3698227_3698350_3698621_3703526
ENSMUSG00000035585.17_3696828_3704011_1	chr7	+	1482	5	NIC	ENSMUSG00000035585.17	novel	1779	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	468.595241119668	497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2239	False	NA	6	True	AATAAA	-16	NA	3696827	3704011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_3697058_3697596_3697844_3697976_3698227_3698350_3698621_3703526
ENSMUSG00000035585.17_3697522_3704011_1	chr7	+	1373	4	NNC	ENSMUSG00000035585.17	novel	1319	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_1	530.083221977665	797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2933	False	NA	6	True	AATAAA	-16	NA	3697521	3704011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_3697844_3697930_3698227_3698350_3698621_3703526
ENSMUSG00000035585.17_3697522_3704011_2	chr7	+	1373	5	NNC	ENSMUSG00000035585.17	novel	1319	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_3	585.09507774378	742	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2933	False	NA	6	True	AATAAA	-16	NA	3697521	3704011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_3697844_3697976_3698227_3698350_3698621_3700823_3700870_3703526
ENSMUSG00000035585.17_3697522_3704011_3	chr7	+	1320	4	NNC	ENSMUSG00000035585.17	novel	1319	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	536.613454918902	801	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2933	False	NA	6	True	AATAAA	-16	NA	3697521	3704011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_3697844_3697983_3698227_3698350_3698621_3703526
ENSMUSG00000035596.15_3680788_3695887_1	chr7	-	2243	8	FSM	ENSMUSG00000035596.15	ENSMUST00000038608.14	2878	8	635	0	0	0	multi-exon	FALSE	canonical	3	178	junction_4	25.6960252623964	321	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTGTGAGTATAACTG	8028	False	NA	-2	True	AATAAA	-15	NA	3695887	3680787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_3681849_3686807_3686985_3688672_3689034_3691521_3691682_3694260_3694388_3694804_3694935_3695038_3695118_3695739
ENSMUSG00000035597.20_65109210_65120721_1	chr12	+	944	7	NNC	ENSMUSG00000035597.20	novel	4069	14	NA	NA	11325	10561	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3511	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCCCGCCTCAATCC	NA	False	NA	NA	False	NA	NA	NA	65109209	65120721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116720_65116817_65120588
ENSMUSG00000035597.20_65109210_65120721_10	chr12	+	938	7	NNC	ENSMUSG00000035597.20	novel	4069	14	NA	NA	11325	10561	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11810	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCCCGCCTCAATCC	NA	False	NA	NA	False	NA	NA	NA	65109209	65120721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_65109515_65110451_65110550_65112522_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
ENSMUSG00000035597.20_65109210_65120721_11	chr12	+	936	7	NNC	ENSMUSG00000035597.20	novel	4069	14	NA	NA	11325	10561	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3335	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCCCGCCTCAATCC	NA	False	NA	NA	False	NA	NA	NA	65109209	65120721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115875_65116729_65116827_65120588
ENSMUSG00000035597.20_65109210_65120721_2	chr12	+	705	7	NNC	ENSMUSG00000035597.20	novel	4069	14	NA	NA	11325	10561	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1459	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCCCGCCTCAATCC	NA	False	NA	NA	False	NA	NA	NA	65109209	65120721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_65109270_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
ENSMUSG00000035597.20_65109210_65120721_3	chr12	+	701	5	NNC	ENSMUSG00000035597.20	novel	4069	14	NA	NA	11325	10561	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	295	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCCCGCCTCAATCC	NA	False	NA	NA	False	NA	NA	NA	65109209	65120721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_65109515_65110451_65110550_65112510_65112579_65116729_65116827_65120588
ENSMUSG00000035597.20_65109210_65120721_4	chr12	+	940	7	NNC	ENSMUSG00000035597.20	novel	4069	14	NA	NA	11325	10561	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	17489	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCCCGCCTCAATCC	NA	False	NA	NA	False	NA	NA	NA	65109209	65120721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_65109515_65110451_65110540_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
ENSMUSG00000035597.20_65109210_65120721_5	chr12	+	963	7	NNC	ENSMUSG00000035597.20	novel	4069	14	NA	NA	11325	10561	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	12639	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCCCGCCTCAATCC	NA	False	NA	NA	False	NA	NA	NA	65109209	65120721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116720_65116827_65120579
ENSMUSG00000035597.20_65109210_65120721_6	chr12	+	928	7	NNC	ENSMUSG00000035597.20	novel	4069	14	NA	NA	11325	10561	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1286	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCCCGCCTCAATCC	NA	False	NA	NA	False	NA	NA	NA	65109209	65120721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115858_65116720_65116827_65120588
ENSMUSG00000035597.20_65109210_65120721_7	chr12	+	945	7	NNC	ENSMUSG00000035597.20	novel	4069	14	NA	NA	11325	10561	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	18015	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCCCGCCTCAATCC	NA	False	NA	NA	False	NA	NA	NA	65109209	65120721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115875_65116720_65116827_65120588
ENSMUSG00000035597.20_65109210_65120721_8	chr12	+	954	7	NIC	ENSMUSG00000035597.20	novel	4069	14	NA	NA	11325	10561	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	52027	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCCCGCCTCAATCC	NA	False	NA	NA	False	NA	NA	NA	65109209	65120721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116720_65116827_65120588
ENSMUSG00000035597.20_65109210_65120721_9	chr12	+	943	7	NNC	ENSMUSG00000035597.20	novel	4069	14	NA	NA	11325	10561	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2033	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCCCGCCTCAATCC	NA	False	NA	NA	False	NA	NA	NA	65109209	65120721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116720_65116827_65120599
ENSMUSG00000035601.10_45297155_45315333_1	chr4	+	1238	9	FSM	ENSMUSG00000035601.10	ENSMUST00000044673.9	2064	9	28	798	0	191	multi-exon	FALSE	canonical	3	203	junction_1	41.8103979292233	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTTAAGTAATTGCC	-8	True	NA	-42	True	GATAAA	-24	NA	45297154	45315333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_45297196_45300416_45300628_45301235_45301351_45304263_45304389_45305743_45305897_45307891_45307971_45308496_45308565_45314282_45314407_45315011
ENSMUSG00000035601.10_45297155_45315489_1	chr4	+	1394	9	FSM	ENSMUSG00000035601.10	ENSMUST00000044673.9	2064	9	28	642	0	347	multi-exon	FALSE	canonical	3	203	junction_1	41.8103979292233	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCGATTTCCACCAGCT	-8	True	NA	12	True	CATAAA	-21	NA	45297154	45315489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_45297196_45300416_45300628_45301235_45301351_45304263_45304389_45305743_45305897_45307891_45307971_45308496_45308565_45314282_45314407_45315011
ENSMUSG00000035637.15_44981403_44990734_1	chr4	+	1264	9	NNC	ENSMUSG00000035637.15	novel	1280	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	113.621905898467	1732	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTTGTGTTTGCTGAC	-23	True	NA	13	True	NA	NA	NA	44981402	44990734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_44981535_44982878_44983010_44983873_44983947_44984429_44984539_44985306_44985396_44986285_44986391_44987215_44987352_44988919_44989051_44990376
ENSMUSG00000035637.15_44981403_44990734_2	chr4	+	1250	10	NNC	ENSMUSG00000035637.15	novel	1280	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	107.74455387113	1734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTTGTGTTTGCTGAC	-23	True	NA	13	True	NA	NA	NA	44981402	44990734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_44981535_44982878_44983010_44983873_44983947_44984429_44984547_44985306_44985396_44986285_44986391_44987215_44987352_44988919_44989051_44990376_44990602_44990623
ENSMUSG00000035637.15_44981403_44990734_3	chr4	+	1267	9	NIC	ENSMUSG00000035637.15	novel	1280	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	111.075354489644	1735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTTGTGTTTGCTGAC	-23	True	NA	13	True	NA	NA	NA	44981402	44990734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_44981535_44982878_44983010_44983873_44983947_44984429_44984547_44985306_44985396_44986290_44986391_44987215_44987352_44988919_44989051_44990376
ENSMUSG00000035642.17_97199547_97228704_1	chr7	-	684	3	FSM	ENSMUSG00000035642.17	ENSMUST00000138060.3	467	3	-15	-202	0	0	multi-exon	FALSE	canonical	2	9	junction_1	14	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAGTTGAGAGCATTAG	NA	False	NA	NA	False	AATAAA	-22	NA	97228704	97199546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_97199949_97214357_97214508_97228572
ENSMUSG00000035642.17_97199772_97228704_1	chr7	-	555	4	FSM	ENSMUSG00000035642.17	ENSMUST00000136757.8	789	4	0	234	0	0	multi-exon	FALSE	canonical	3	37	junction_3	30.4740326617051	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGCTGTCTTACCAGTC	NA	False	NA	-24	True	AATAAA	-14	NA	97228704	97199771	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97228572
ENSMUSG00000035642.17_97219015_97228667_1	chr7	-	343	3	NNC	ENSMUSG00000035642.17	novel	723	4	NA	NA	14	6092	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	34.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTGCTTCTGTTTTTTT	NA	False	NA	NA	False	AATAAA	-22	NA	97228667	97219014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_97219159_97224794_97224899_97228572
ENSMUSG00000035673.11_79892826_79894723_1	chr10	-	1451	6	ISM	ENSMUSG00000035673.11	ENSMUST00000218630.2	3903	32	42298	-779	16511	0	3prime_fragment	FALSE	canonical	3	144	junction_5	16.2283702200806	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGGCCTACAGGTCAG	NA	False	NA	4	True	AATATA	-21	NA	79894723	79892825	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894564_79894638
ENSMUSG00000035674.14_3620372_3623153_1	chr7	+	434	4	NNC	ENSMUSG00000035674.14	novel	515	4	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	1640.84537832044	14595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCCCACAATCTTTTCTT	255	False	NA	13	True	AATAAA	-15	NA	3620371	3623153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_3620499_3620615_3620691_3622428_3622507_3622999
ENSMUSG00000035674.14_3620372_3623153_2	chr7	+	481	4	NNC	ENSMUSG00000035674.14	novel	515	4	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	1412.24698815595	777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCCCACAATCTTTTCTT	255	False	NA	13	True	AATAAA	-15	NA	3620371	3623153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_3620407_3620615_3620830_3622428_3622507_3622999
ENSMUSG00000035674.14_3623323_3632583_1	chr7	+	821	6	NIC	ENSMUSG00000035674.14	novel	515	4	NA	NA	2707	9257	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGACACCTCAAGCCTCA	3206	False	NA	NA	False	NA	NA	NA	3623322	3632583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_3623474_3623745_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
ENSMUSG00000035674.14_3623323_3632883_1	chr7	+	1121	6	NIC	ENSMUSG00000035674.14	novel	515	4	NA	NA	2707	9557	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGCCGTCCCGCGAGGCGG	3206	False	NA	NA	False	NA	NA	NA	3623322	3632883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_3623474_3623745_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
ENSMUSG00000035674.14_3623323_3632883_2	chr7	+	1397	5	NIC	ENSMUSG00000035674.14	novel	515	4	NA	NA	2707	9557	intron_retention	FALSE	non_canonical	0	0	junction_1	0	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGCCGTCCCGCGAGGCGG	3206	False	NA	NA	False	NA	NA	NA	3623322	3632883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_3623983_3624061_3624132_3627597_3627669_3631822_3632086_3632550
ENSMUSG00000035674.14_3623323_3632883_3	chr7	+	1050	5	NIC	ENSMUSG00000035674.14	novel	515	4	NA	NA	2707	9557	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGCCGTCCCGCGAGGCGG	3206	False	NA	NA	False	NA	NA	NA	3623322	3632883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_3623474_3623745_3623983_3624061_3624132_3631826_3632086_3632550
ENSMUSG00000035683.14_44300876_44303977_1	chr4	+	604	2	ISM	ENSMUSG00000035683.14	ENSMUST00000045607.12	2955	18	0	60698	0	-14093	5prime_fragment	FALSE	canonical	3	522	junction_1	0	939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAATTTATTTTAGTGT	NA	False	NA	NA	False	NA	NA	NA	44300875	44303977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_44301073_44303570
ENSMUSG00000035683.14_44300978_44303977_1	chr4	+	456	3	NNC	ENSMUSG00000035683.14	novel	2955	18	NA	NA	102	-14093	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	261	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAATTTATTTTAGTGT	6	True	NA	NA	False	NA	NA	NA	44300977	44303977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_44301073_44303570_44303851_44303896
ENSMUSG00000035683.14_44347183_44364296_1	chr4	+	1130	5	ISM	ENSMUSG00000035683.14	ENSMUST00000045607.12	2955	18	46307	379	43615	-379	3prime_fragment	FALSE	canonical	3	413	junction_4	24.3361870472759	939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAGACTATTTGGAGTGT	9358	False	NA	26	True	AATAAA	-27	NA	44347182	44364296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
ENSMUSG00000035683.14_44347183_44364682_1	chr4	+	1516	5	ISM	ENSMUSG00000035683.14	ENSMUST00000045607.12	2955	18	46307	-7	43615	7	3prime_fragment	FALSE	canonical	3	413	junction_4	24.3361870472759	1000	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCACTGTTTCTGGTCAGT	9358	False	NA	NA	False	ATTAAA	-18	NA	44347182	44364682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
ENSMUSG00000035686.9_97062145_97066736_1	chr7	-	1076	2	FSM	ENSMUSG00000035686.9	ENSMUST00000043077.8	1277	2	201	0	-10	0	multi-exon	FALSE	canonical	3	27	junction_1	0	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCATGTTGGTCTTTTA	NA	False	NA	-6	True	ATTAAA	-15	NA	97066736	97062144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_97062723_97066238
ENSMUSG00000035697.15_79864248_79867304_1	chr10	+	1508	4	ISM	ENSMUSG00000035697.15	ENSMUST00000150022.2	2980	15	6671	-8	6671	1	3prime_fragment	FALSE	canonical	3	84	junction_1	10.6249183003395	198	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCCGATCTTGTTCTTTT	2561	False	NA	14	True	AATAAA	-19	NA	79864247	79867304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_79864718_79864806_79865018_79866122_79866211_79866565
ENSMUSG00000035697.15_79864467_79867304_1	chr10	+	1289	4	ISM	ENSMUSG00000035697.15	ENSMUST00000150022.2	2980	15	6890	-8	6890	1	3prime_fragment	FALSE	canonical	3	84	junction_1	10.6249183003395	173	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCCGATCTTGTTCTTTT	2780	False	NA	14	True	AATAAA	-19	NA	79864466	79867304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_79864718_79864806_79865018_79866122_79866211_79866565
ENSMUSG00000035704.18_97020813_97040987_1	chr7	+	1634	13	FSM	ENSMUSG00000035704.18	ENSMUST00000098300.6	2039	13	0	405	0	28	multi-exon	TRUE	canonical	3	93	junction_8	19.8289560996034	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCAAGCAATTACTTCATG	NA	False	NA	5	True	AATAAA	-17	NA	97020812	97040987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892_97033014_97036008_97036149_97037655_97037796_97039448_97039547_97040095_97040169_97040734
ENSMUSG00000035722.16_79849456_79851406_1	chr10	+	979	6	ISM	ENSMUSG00000035722.16	ENSMUST00000043866.8	6590	46	16007	-4	16007	0	3prime_fragment	FALSE	canonical	3	34	junction_1	12.1424873893284	244	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCCACGGCTGAGTTTG	8560	False	NA	10	True	AATAAA	-19	NA	79849455	79851406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_79849595_79849679_79849815_79850062_79850167_79850301_79850395_79850780_79851022_79851139
ENSMUSG00000035722.16_79850489_79851406_1	chr10	+	583	3	NNC	ENSMUSG00000035722.16	novel	6696	47	NA	NA	17040	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	34	159	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCCACGGCTGAGTTTG	9593	False	NA	10	True	AATAAA	-19	NA	79850488	79851406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79850564_79850780_79851022_79851139
ENSMUSG00000035725.14_76829736_76839578_1	chrX	-	592	2	ISM	ENSMUSG00000035725.14	ENSMUST00000114044.2	2639	4	0	14675	0	-14675	5prime_fragment	FALSE	canonical	3	48	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGAGTTCCTGGCTCCTT	NA	False	NA	NA	False	AATAAA	-20	NA	76839578	76829735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_76829903_76839153
ENSMUSG00000035726.9_52397871_52434697_1	chr14	-	4497	26	FSM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	176	0	176	0	multi-exon	FALSE	canonical	3	979	junction_21	82.6076606617086	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTTATGACCATTT	NA	False	NA	-1	True	AATAAA	-40	NA	52434697	52397870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
ENSMUSG00000035726.9_52418569_52434697_1	chr14	-	777	6	ISM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	176	20698	176	-19393	5prime_fragment	FALSE	canonical	3	979	junction_1	84.3644474882637	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTAGCTGGGGCAGATCC	NA	False	NA	NA	False	AAGAAA	-6	NA	52434697	52418568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
ENSMUSG00000035754.9_79795989_79803526_1	chr10	+	1397	10	FSM	ENSMUSG00000035754.9	ENSMUST00000045247.9	3911	10	3	2511	0	81	multi-exon	FALSE	canonical	3	1673	junction_5	33.7828943493195	5071	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGCGCCTTGGTTGTTCT	2289	False	NA	31	True	ACTAAA	-19	NA	79795988	79803526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_79796207_79796835_79796947_79800759_79800894_79801043_79801186_79801813_79801958_79802039_79802105_79802178_79802304_79802393_79802561_79803153_79803223_79803304
ENSMUSG00000035759.5_111134540_111137588_1	chr10	+	2720	3	NNC	ENSMUSG00000035759.5	novel	2744	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	5	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCATGTAAGTTAATTGT	NA	False	NA	NA	False	AATAAA	-20	NA	111134539	111137588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_111134769_111135073_111137471_111137494
ENSMUSG00000035762.12_84370432_84443989_1	chr13	+	2573	12	FSM	ENSMUSG00000035762.12	ENSMUST00000057495.10	2857	12	13	271	0	0	multi-exon	FALSE	canonical	0	0	junction_10	57.0470300398157	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTAATTTATTTGTT	NA	False	NA	21	True	ATTAAA	-22	NA	84370431	84443989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
ENSMUSG00000035770.9_105147139_105169443_1	chr8	-	1564	13	FSM	ENSMUSG00000035770.9	ENSMUST00000041769.8	4627	13	236	2827	-67	0	multi-exon	FALSE	canonical	3	129	junction_6	10.797054639525	277	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGGCACATGCTGTCAGT	2004	False	NA	-84	True	NA	NA	NA	105169443	105147138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_105147315_105148918_105149036_105149744_105149863_105150217_105150260_105152070_105152131_105152590_105152703_105154677_105154814_105156046_105156141_105157032_105157203_105163994_105164226_105167105_105167223_105169105_105169180_105169326
ENSMUSG00000035772.12_28358094_28360657_1	chr2	+	1531	4	FSM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	16	533	0	-520	multi-exon	FALSE	canonical	3	508	junction_2	49.4592986426438	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCCATGTTTGGCTGAAG	NA	False	NA	36	True	NA	NA	NA	28358093	28360657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434
ENSMUSG00000035772.12_28358094_28360966_1	chr2	+	1840	4	FSM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	16	224	0	-211	multi-exon	FALSE	canonical	3	508	junction_2	49.4592986426438	706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTCACAAGTATTTTATA	NA	False	NA	27	True	NA	NA	NA	28358093	28360966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434
ENSMUSG00000035778.18_35312032_35335845_1	chr2	-	687	4	NIC	ENSMUSG00000035778.18	novel	341	3	NA	NA	0	1309	combination_of_known_junctions	FALSE	canonical	3	25	junction_3	31.2089730686545	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACTTCTGCCTTAGTAAT	1165	False	NA	NA	False	ATTAAA	-17	NA	35335845	35312031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_35312281_35313243_35313425_35322525_35322645_35335707
ENSMUSG00000035828.12_88747498_88749929_1	chr15	+	1583	3	ISM	ENSMUSG00000035828.12	ENSMUST00000042818.11	2427	6	1109	0	1109	0	3prime_fragment	FALSE	canonical	3	856	junction_1	44	974	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTCTGTTTATTGGACT	NA	False	NA	30	True	ATTAAA	-20	NA	88747497	88749929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_88747752_88748518_88748696_88748777
ENSMUSG00000035845.18_88695068_88703498_1	chr15	-	1488	7	ISM	ENSMUSG00000035845.18	ENSMUST00000162183.8	2130	10	23	5621	-10	3743	5prime_fragment	FALSE	canonical	0	0	junction_2	14.8548533034381	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTCGGTGTCTCTTCCTG	9267	False	NA	NA	False	GATAAA	-44	NA	88703498	88695067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_88695724_88696258_88696363_88698656_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
ENSMUSG00000035851.15_86964891_86984518_1	chr5	+	2378	14	ISM	ENSMUSG00000035851.15	ENSMUST00000038384.8	2960	17	12468	-2	1377	0	3prime_fragment	FALSE	canonical	3	72	junction_10	56.8493285259039	229	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTATTTCCTTGTCT	NA	False	NA	13	True	AATAAA	-21	NA	86964890	86984518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_86965193_86967944_86968035_86968491_86968546_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86975981_86978412_86978496_86979522_86979560_86979631_86979696_86979806_86979870_86981366_86981502_86983542
ENSMUSG00000035851.15_86964891_86984518_2	chr5	+	2354	14	ISM	ENSMUSG00000035851.15	ENSMUST00000120498.8	3269	17	12799	0	1377	0	3prime_fragment	FALSE	canonical	3	183	junction_10	31.6023742647858	224	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTATTTCCTTGTCT	NA	False	NA	13	True	AATAAA	-21	NA	86964890	86984518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_86965193_86967944_86968035_86968491_86968546_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86975981_86978412_86978496_86979522_86979560_86979655_86979696_86979806_86979870_86981366_86981502_86983542
ENSMUSG00000035885.6_7192518_7194908_1	chr19	-	477	2	FSM	ENSMUSG00000035885.6	ENSMUST00000039758.6	550	2	73	0	0	0	multi-exon	FALSE	canonical	3	12296	junction_1	0	139464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCATGTCCTTCTGCAC	7439	False	NA	NA	False	AATAAA	-26	NA	7194908	7192517	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_7192850_7194763
ENSMUSG00000035890.10_79594376_79596741_1	chr10	-	812	2	ISM	ENSMUSG00000035890.10	ENSMUST00000218770.2	1408	8	6034	0	6003	0	3prime_fragment	FALSE	canonical	3	1194	junction_1	0	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCCATGGCTTGGCGTC	NA	False	NA	-7	True	AATACA	-16	NA	79596741	79594375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_79595071_79596624
ENSMUSG00000035890.10_79594600_79596741_1	chr10	-	588	2	ISM	ENSMUSG00000035890.10	ENSMUST00000218770.2	1408	8	6034	224	6003	-224	3prime_fragment	FALSE	canonical	3	1194	junction_1	0	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGCGGCCATGCATGGTCT	NA	False	NA	-19	True	AATAAA	-16	NA	79596741	79594599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_79595071_79596624
ENSMUSG00000035891.17_86025611_86027917_1	chr15	-	515	3	NNC	ENSMUSG00000035891.17	novel	2162	8	NA	NA	8732	-1089	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	5.5	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGCTTTGTCAACAGTTC	6275	False	NA	NA	False	NA	NA	NA	86027917	86025610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_86025814_86026882_86027092_86027814
ENSMUSG00000035953.15_51162435_51164596_1	chr14	-	1407	4	NNC	ENSMUSG00000035953.15	novel	2755	7	NA	NA	2070	1090	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1112	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACGTGGGCGATTGGTGT	NA	False	NA	NA	False	NA	NA	NA	51164596	51162434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_51162782_51162973_51163162_51163617_51163811_51163917
ENSMUSG00000035953.15_51162435_51164596_2	chr14	-	1221	5	NNC	ENSMUSG00000035953.15	novel	2755	7	NA	NA	2070	1090	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2550	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACGTGGGCGATTGGTGT	NA	False	NA	NA	False	NA	NA	NA	51164596	51162434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_51162479_51162669_51162782_51162973_51163162_51163617_51163811_51163912
ENSMUSG00000035953.15_51162435_51164596_3	chr14	-	1220	5	NNC	ENSMUSG00000035953.15	novel	2755	7	NA	NA	2070	1090	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1767	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACGTGGGCGATTGGTGT	NA	False	NA	NA	False	NA	NA	NA	51164596	51162434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_51162487_51162669_51162782_51162973_51163162_51163626_51163811_51163912
ENSMUSG00000035953.15_51162435_51164596_4	chr14	-	1225	5	NNC	ENSMUSG00000035953.15	novel	2755	7	NA	NA	2070	1090	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2540	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACGTGGGCGATTGGTGT	NA	False	NA	NA	False	NA	NA	NA	51164596	51162434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_51162492_51162678_51162782_51162973_51163162_51163617_51163811_51163912
ENSMUSG00000035953.15_51162435_51164596_5	chr14	-	1412	4	NIC	ENSMUSG00000035953.15	novel	2755	7	NA	NA	2070	1090	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACGTGGGCGATTGGTGT	NA	False	NA	NA	False	NA	NA	NA	51164596	51162434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_51162782_51162973_51163162_51163617_51163811_51163912
ENSMUSG00000035953.15_51162435_51164596_6	chr14	-	1224	5	NNC	ENSMUSG00000035953.15	novel	2755	7	NA	NA	2070	1090	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4186	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACGTGGGCGATTGGTGT	NA	False	NA	NA	False	NA	NA	NA	51164596	51162434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_51162487_51162674_51162782_51162973_51163162_51163617_51163811_51163912
ENSMUSG00000035958.4_25015664_25025472_1	chr13	+	1291	7	FSM	ENSMUSG00000035958.4	ENSMUST00000038039.3	1957	7	2	664	0	-316	multi-exon	FALSE	canonical	3	768	junction_5	64.0791611125559	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCTAACGTTTTACTTTG	NA	False	NA	22	True	AATAAA	-23	NA	25015663	25025472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_25015913_25015992_25016079_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
ENSMUSG00000035958.4_25015664_25026135_2	chr13	+	1868	6	NIC	ENSMUSG00000035958.4	novel	1957	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	322.122585361536	879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACGACTTTTTTCTTCAT	NA	False	NA	20	True	AATAAA	-20	NA	25015663	25026135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_25015913_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
ENSMUSG00000035960.15_51162435_51164596_1	chr14	+	1224	5	NNC	ENSMUSG00000035960.15	novel	1239	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	453.582131482271	3987	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTTTCTTTGTCCCT	189	False	NA	14	True	AATAAA	-15	NA	51162434	51164596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_51162487_51162669_51162782_51162973_51163162_51163617_51163811_51163917
ENSMUSG00000035960.15_51162435_51164596_2	chr14	+	1234	5	FSM	ENSMUSG00000035960.15	ENSMUST00000136753.8	655	5	9	-588	0	0	multi-exon	FALSE	canonical	3	124	junction_1	445.940298694792	5266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTTTCTTTGTCCCT	189	False	NA	14	True	AATAAA	-15	NA	51162434	51164596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_51162492_51162669_51162782_51162973_51163162_51163617_51163811_51163912
ENSMUSG00000035983.5_40253130_40272961_1	chr12	+	1587	12	NIC	ENSMUSG00000035983.5	novel	1366	2	NA	NA	-19627	-2276	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1051	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCCGGTGCCGCCTACAC	4946	False	NA	NA	False	NA	NA	NA	40253129	40272961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_40253451_40253917_40254014_40254295_40254425_40256987_40257123_40262308_40262418_40262937_40263117_40263207_40263259_40263976_40264135_40266188_40266314_40267156_40267242_40267376_40267482_40272867
ENSMUSG00000035983.5_40253130_40273184_1	chr12	+	1810	12	NIC	ENSMUSG00000035983.5	novel	1366	2	NA	NA	-19627	-2053	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTGGCCAGACCACGACG	4946	False	NA	NA	False	NA	NA	NA	40253129	40273184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_40253451_40253917_40254014_40254295_40254425_40256987_40257123_40262308_40262418_40262937_40263117_40263207_40263259_40263976_40264135_40266188_40266314_40267156_40267242_40267376_40267482_40272867
ENSMUSG00000035983.5_40253130_40273184_2	chr12	+	1805	12	NNC	ENSMUSG00000035983.5	novel	1366	2	NA	NA	-19627	-2053	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1232	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTGGCCAGACCACGACG	4946	False	NA	NA	False	NA	NA	NA	40253129	40273184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_40253451_40253917_40254014_40254295_40254425_40256987_40257123_40262308_40262418_40262937_40263117_40263207_40263259_40263976_40264130_40266188_40266314_40267156_40267242_40267376_40267482_40272867
ENSMUSG00000035983.5_40273428_40275243_1	chr12	+	701	2	FSM	ENSMUSG00000035983.5	ENSMUST00000038121.5	1366	2	671	-6	0	6	multi-exon	FALSE	canonical	3	8	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCGCAATTTATGTTCACA	NA	False	NA	NA	False	AATAAA	-15	NA	40273427	40275243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_40273553_40274667
ENSMUSG00000036009.17_105599116_105635676_1	chr10	-	695	8	NNC	ENSMUSG00000036009.17	novel	2145	13	NA	NA	41396	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	44.8967068470983	113	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAAAATCATAGTGTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	105635676	105599115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105635628
ENSMUSG00000036009.17_105599116_105635746_1	chr10	-	731	8	NNC	ENSMUSG00000036009.17	novel	2145	13	NA	NA	41326	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	43.1797382567144	342	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAAAATCATAGTGTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	105635746	105599115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105635662
ENSMUSG00000036009.17_105599116_105635791_1	chr10	-	713	8	NNC	ENSMUSG00000036009.17	novel	2145	13	NA	NA	41281	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	44.209612030851	261	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAAAATCATAGTGTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	105635791	105599115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105635725
ENSMUSG00000036009.17_105599116_105635861_1	chr10	-	751	8	NNC	ENSMUSG00000036009.17	novel	2145	13	NA	NA	41211	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_7	42.1508467002861	373	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAAAATCATAGTGTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	105635861	105599115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105635757
ENSMUSG00000036009.17_105599116_105635971_1	chr10	-	734	8	NNC	ENSMUSG00000036009.17	novel	2145	13	NA	NA	41101	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_7	42.1508467002861	326	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAAAATCATAGTGTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	105635971	105599115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105635884
ENSMUSG00000036009.17_105599116_105635971_2	chr10	-	797	8	NNC	ENSMUSG00000036009.17	novel	2145	13	NA	NA	41101	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	43.1797382567144	389	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAAAATCATAGTGTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	105635971	105599115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105635821
ENSMUSG00000036009.17_105599116_105635971_3	chr10	-	766	8	NNC	ENSMUSG00000036009.17	novel	2145	13	NA	NA	41101	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_7	43.5229238213517	328	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAAAATCATAGTGTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	105635971	105599115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105635852
ENSMUSG00000036009.17_105599116_105635971_4	chr10	-	702	8	NNC	ENSMUSG00000036009.17	novel	2145	13	NA	NA	41101	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_7	41.1230110864504	223	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAAAATCATAGTGTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	105635971	105599115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105635916
ENSMUSG00000036009.17_105599116_105636066_1	chr10	-	702	8	NNC	ENSMUSG00000036009.17	novel	2145	13	NA	NA	41006	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_7	42.1508467002861	193	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAAAATCATAGTGTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	105636066	105599115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105636011
ENSMUSG00000036009.17_105599116_105677232_1	chr10	-	1876	12	NNC	ENSMUSG00000036009.17	novel	2145	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	39.2127066604228	497	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAAAATCATAGTGTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	105677232	105599115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661942_105662453_105665708_105665816_105668711_105668877_105676936
ENSMUSG00000036023.7_51045382_51058757_1	chr14	+	1804	16	NNC	ENSMUSG00000036023.7	novel	1894	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	205.864291868859	1604	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045381	51058757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052424_51052808_51052885_51053653_51053757_51054429_51054581_51054793_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
ENSMUSG00000036023.7_51045382_51058757_2	chr14	+	1798	16	NIC	ENSMUSG00000036023.7	novel	1894	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_5	194.893064696173	1665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045381	51058757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052413_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
ENSMUSG00000036023.7_51045382_51058757_3	chr14	+	1877	16	NIC	ENSMUSG00000036023.7	novel	1894	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	196.861327391192	1677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045381	51058757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_51045445_51047462_51047672_51047956_51048028_51049232_51049284_51052326_51052424_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
ENSMUSG00000036036.16_37313446_37321524_1	chr17	+	1564	5	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	1406.78256582174	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313445	37321524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_37313514_37314177_37314208_37315688_37315796_37316941_37317087_37320310
ENSMUSG00000036036.16_37313446_37321524_2	chr17	+	1672	4	NIC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	1458.01973771124	597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313445	37321524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_37313652_37315688_37315796_37316941_37317087_37320310
ENSMUSG00000036036.16_37313446_37321524_3	chr17	+	1690	4	NIC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	19	junction_1	1449.17938464805	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313445	37321524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_37313670_37315688_37315796_37316941_37317087_37320310
ENSMUSG00000036036.16_37313446_37321524_4	chr17	+	1711	5	ISM	ENSMUSG00000036036.16	ENSMUST00000089968.13	1991	6	1391	0	0	0	3prime_fragment	FALSE	canonical	3	426	junction_1	1230.59345439507	2831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313445	37321524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_37313670_37314177_37314208_37315688_37315796_37316950_37317087_37320310
ENSMUSG00000036036.16_37313446_37321524_5	chr17	+	1682	5	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1406.78256582174	2301	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313445	37321524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_37313632_37314177_37314208_37315688_37315796_37316941_37317087_37320310
ENSMUSG00000036036.16_37313446_37321524_7	chr17	+	1663	4	NIC	ENSMUSG00000036036.16	novel	1991	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	1475.04508405676	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313445	37321524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_37313652_37315688_37315796_37316950_37317087_37320310
ENSMUSG00000036036.16_37313562_37321524_1	chr17	+	1595	5	ISM	ENSMUSG00000036036.16	ENSMUST00000089968.13	1991	6	1507	0	0	0	3prime_fragment	FALSE	canonical	3	426	junction_1	1230.59345439507	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313561	37321524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_37313670_37314177_37314208_37315688_37315796_37316950_37317087_37320310
ENSMUSG00000036036.16_37313562_37321524_2	chr17	+	1566	5	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1406.78256582174	183	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313561	37321524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_37313632_37314177_37314208_37315688_37315796_37316941_37317087_37320310
ENSMUSG00000036036.16_37313562_37321524_3	chr17	+	1604	5	FSM	ENSMUSG00000036036.16	ENSMUST00000069250.14	1749	5	145	0	0	0	multi-exon	FALSE	canonical	3	426	junction_1	1286.78268852981	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313561	37321524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_37313670_37314177_37314208_37315688_37315796_37316941_37317087_37320310
ENSMUSG00000036036.16_37313562_37321524_4	chr17	+	1556	4	NIC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	1458.01973771124	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313561	37321524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_37313652_37315688_37315796_37316941_37317087_37320310
ENSMUSG00000036054.16_70672848_70687099_1	chr8	+	2220	8	NIC	ENSMUSG00000036054.16	novel	4099	10	NA	NA	-14028	-8202	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	330	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCGACGCTTGCGCATG	NA	False	NA	NA	False	NA	NA	NA	70672847	70687099	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_70673528_70674755_70674894_70675167_70675300_70676193_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686759
ENSMUSG00000036061.11_103065967_103071757_1	chr15	-	509	3	ISM	ENSMUSG00000036061.11	ENSMUST00000229371.2	3882	7	3762	4250	-3	-1480	internal_fragment	TRUE	canonical	3	65	junction_2	7.5	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTCTATAGGGGTGAGG	NA	False	NA	NA	False	NA	NA	NA	103071757	103065966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_103066346_103066583_103066655_103071698
ENSMUSG00000036073.18_41755521_41758695_1	chr4	+	1298	11	NNC	ENSMUSG00000036073.19	novel	1595	11	NA	NA	-237	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	124.742494764214	1814	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGAGGAGTAGTGTGGA	0	True	NA	32	True	AATAAA	-33	NA	41755520	41758695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_41755653_41755968_41756131_41756346_41756423_41756512_41756562_41756681_41756812_41756938_41757000_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
ENSMUSG00000036073.18_41755521_41758695_2	chr4	+	1425	10	NIC	ENSMUSG00000036073.19	novel	1595	11	NA	NA	-237	0	intron_retention	FALSE	canonical	2	43	junction_2	87.4838962253364	1720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGAGGAGTAGTGTGGA	0	True	NA	32	True	AATAAA	-33	NA	41755520	41758695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_41755653_41755960_41756131_41756343_41756423_41756512_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
ENSMUSG00000036073.18_41755521_41758695_3	chr4	+	1302	11	FSM	ENSMUSG00000036073.19	ENSMUST00000084695.12	1595	11	293	0	-237	0	multi-exon	FALSE	canonical	2	236	junction_6	31.3438989278615	2444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGAGGAGTAGTGTGGA	0	True	NA	32	True	AATAAA	-33	NA	41755520	41758695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_41755653_41755960_41756131_41756346_41756423_41756512_41756562_41756681_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
ENSMUSG00000036073.18_41755521_41758695_4	chr4	+	1556	9	NNC	ENSMUSG00000036073.19	novel	1595	11	NA	NA	-237	0	intron_retention	FALSE	canonical	0	0	junction_4	130.035031337713	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGAGGAGTAGTGTGGA	0	True	NA	32	True	AATAAA	-33	NA	41755520	41758695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_41755653_41755960_41756131_41756343_41756423_41756512_41757000_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
ENSMUSG00000036078.17_41738493_41741186_1	chr4	-	1467	4	FSM	ENSMUSG00000036078.17	ENSMUST00000059354.15	1640	4	173	0	0	0	multi-exon	FALSE	canonical	3	474	junction_2	54.2647829320883	2570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTTCCTTATGTGTCTAA	3920	False	NA	NA	False	AATAAA	-17	NA	41741186	41738492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_41739581_41740549_41740643_41740775_41740977_41741101
ENSMUSG00000036078.17_41738493_41741320_1	chr4	-	1554	4	NIC	ENSMUSG00000036078.17	novel	1640	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_2	247.10906274131	3385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTTCCTTATGTGTCTAA	3	True	NA	NA	False	AATAAA	-17	NA	41741320	41738492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_41739581_41740549_41740643_41740822_41740977_41741101
ENSMUSG00000036078.17_41755521_41756723_1	chr4	-	592	4	NIC	ENSMUSG00000036078.17	novel	1087	3	NA	NA	-566	-693	intron_retention	FALSE	non_canonical	0	0	junction_1	0	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCCCCCCGCCCACCCTG	NA	False	NA	NA	False	NA	NA	NA	41756723	41755520	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_41755653_41755960_41756131_41756343_41756423_41756512
ENSMUSG00000036086.17_127914847_128030200_1	chr1	-	2044	13	NIC	ENSMUSG00000036086.17	novel	1913	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	50.1305933426774	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGATATGTGTGATTGGTG	NA	False	NA	NA	False	AATAAA	-15	NA	128030200	127914846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_127915137_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029989
ENSMUSG00000036106.16_84547410_84587873_1	chr15	+	1565	8	NNC	ENSMUSG00000036106.16	novel	1719	9	NA	NA	-6411	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	49.7864828799045	105	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTCTGCCCCCTGGT	8459	False	NA	4	True	AATAAA	-14	NA	84547409	84587873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_84547463_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
ENSMUSG00000036106.16_84564883_84587873_1	chr15	+	1710	9	NNC	ENSMUSG00000036106.16	novel	1830	8	NA	NA	-320	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	47.5861061655606	140	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTCTGCCCCCTGGT	NA	False	NA	4	True	AATAAA	-14	NA	84564882	84587873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_84564961_84565400_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
ENSMUSG00000036109.18_50209329_50294481_1	chrX	-	1697	8	NNC	ENSMUSG00000036109.18	novel	2243	8	NA	NA	228	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	8.22638859936455	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTCTTTCATGCTATAGT	NA	False	NA	NA	False	ATTAAA	-13	NA	50294481	50209328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_50209896_50212693_50212789_50217797_50217949_50218981_50219219_50220305_50220498_50228080_50228246_50253294_50253542_50294438
ENSMUSG00000036111.9_108737779_108774311_1	chr7	-	912	4	FSM	ENSMUSG00000036111.9	ENSMUST00000207178.2	912	4	103	-103	103	0	multi-exon	FALSE	canonical	3	61	junction_1	6.37704215656966	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGACTGCATTGTTCA	NA	False	NA	-4	True	ATTAAA	-18	NA	108774311	108737778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_108738184_108739788_108739915_108742662_108742877_108774144
ENSMUSG00000036112.16_93696790_93698310_1	chr10	-	747	2	ISM	ENSMUSG00000036112.16	ENSMUST00000181894.2	3034	3	1622	1102	1553	0	3prime_fragment	FALSE	canonical	3	2160	junction_1	0	2035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGATACATTTTAATGTG	NA	False	NA	-16	True	AATAAA	-16	NA	93698310	93696789	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_93697465_93698238
ENSMUSG00000036112.16_93696790_93725533_1	chr10	-	1842	11	FSM	ENSMUSG00000036112.16	ENSMUST00000047910.15	4424	11	143	2439	-57	0	multi-exon	FALSE	canonical	3	2022	junction_3	150.158882521148	5227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGATACATTTTAATGTG	NA	False	NA	-16	True	AATAAA	-16	NA	93725533	93696789	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
ENSMUSG00000036112.16_93697194_93698310_1	chr10	-	343	2	ISM	ENSMUSG00000036112.16	ENSMUST00000181894.2	3034	3	1622	1506	1553	249	3prime_fragment	FALSE	canonical	3	2160	junction_1	0	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAACGTCTTTATTTTCTA	NA	False	NA	0	True	ATTAAA	-18	NA	93698310	93697193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_93697465_93698238
ENSMUSG00000036112.16_93715955_93725670_1	chr10	-	425	3	FSM	ENSMUSG00000036112.16	ENSMUST00000181104.2	931	3	-47	553	0	-553	multi-exon	FALSE	canonical	3	2075	junction_1	110	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGAAGAAGAGAGGAC	NA	False	NA	15	True	NA	NA	NA	93725670	93715954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_93716001_93722855_93722964_93725399
ENSMUSG00000036120.11_70583997_70586402_1	chr8	-	1166	5	NNC	ENSMUSG00000036120.11	novel	3282	5	NA	NA	1875	-541	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	908	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGCAGTGCTACACAGACAC	NA	False	NA	NA	False	NA	NA	NA	70586402	70583996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70584242_70584567_70584659_70585061_70585168_70585236_70585301_70585742
ENSMUSG00000036120.11_70583997_70586402_2	chr8	-	1178	5	NNC	ENSMUSG00000036120.11	novel	3282	5	NA	NA	1875	-541	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGCAGTGCTACACAGACAC	NA	False	NA	NA	False	NA	NA	NA	70586402	70583996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70584250_70584567_70584659_70585061_70585168_70585236_70585316_70585753
ENSMUSG00000036120.11_70583997_70586402_3	chr8	-	1179	5	NNC	ENSMUSG00000036120.11	novel	3282	5	NA	NA	1875	-541	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGCAGTGCTACACAGACAC	NA	False	NA	NA	False	NA	NA	NA	70586402	70583996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70584250_70584567_70584664_70585061_70585168_70585236_70585301_70585742
ENSMUSG00000036120.11_70583997_70586402_4	chr8	-	1168	5	NNC	ENSMUSG00000036120.11	novel	3282	5	NA	NA	1875	-541	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1723	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGCAGTGCTACACAGACAC	NA	False	NA	NA	False	NA	NA	NA	70586402	70583996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70584250_70584573_70584659_70585061_70585168_70585236_70585301_70585742
ENSMUSG00000036120.11_70583997_70586402_5	chr8	-	1192	5	NNC	ENSMUSG00000036120.11	novel	3282	5	NA	NA	1875	-541	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGCAGTGCTACACAGACAC	NA	False	NA	NA	False	NA	NA	NA	70586402	70583996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70584250_70584567_70584659_70585061_70585168_70585218_70585301_70585742
ENSMUSG00000036120.11_70583997_70586402_6	chr8	-	1174	5	NIC	ENSMUSG00000036120.11	novel	3282	5	NA	NA	1875	-541	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	6940	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGCAGTGCTACACAGACAC	NA	False	NA	NA	False	NA	NA	NA	70586402	70583996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_70584250_70584567_70584659_70585061_70585168_70585236_70585305_70585746
ENSMUSG00000036120.11_70585243_70586402_1	chr8	-	712	2	NNC	ENSMUSG00000036120.11	novel	3282	5	NA	NA	1875	673	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	112	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAACCTGCAATGGAGAAA	NA	False	NA	NA	False	NA	NA	NA	70586402	70585242	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70585299_70585746
ENSMUSG00000036120.11_70585916_70591855_1	chr8	-	1200	9	FSM	ENSMUSG00000036120.11	ENSMUST00000075724.9	3609	9	-51	2460	-51	0	multi-exon	FALSE	canonical	3	42	junction_5	11.7626261948597	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCAGGGTGCCTCCCA	9494	False	NA	2	True	AATAAA	-18	NA	70591855	70585915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70586114_70586875_70586957_70587261_70587329_70587688_70587815_70587940_70588042_70588215_70588282_70588859_70588941_70590678_70590874_70591570
ENSMUSG00000036138.17_119165000_119169086_1	chr9	+	1939	6	NIC	ENSMUSG00000036138.17	novel	646	4	NA	NA	-3742	-2732	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTAAGTCTCCTGCCAGCC	2368	False	NA	NA	False	NA	NA	NA	119164999	119169086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_119165966_119166400_119166577_119166819_119166912_119167071_119167253_119167641_119167777_119168697
ENSMUSG00000036155.14_127410853_127412091_1	chr1	+	488	3	NNC	ENSMUSG00000036155.14	novel	3216	16	NA	NA	176354	650	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	38	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTAGCATTGTCCACCC	NA	False	NA	NA	False	NA	NA	NA	127410852	127412091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_127411046_127411644_127411801_127411952
ENSMUSG00000036167.17_93296231_93387197_1	chr15	+	1369	9	NIC	ENSMUSG00000036167.17	novel	3573	10	NA	NA	0	8	combination_of_known_junctions	FALSE	canonical	3	55	junction_3	46.1078897803836	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATCTTAATTAGAATGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	93296230	93387197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_93296343_93308572_93308665_93318164_93318372_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
ENSMUSG00000036167.17_93296231_93387197_2	chr15	+	1042	7	NIC	ENSMUSG00000036167.17	novel	1154	8	NA	NA	0	8	combination_of_known_splicesites	FALSE	canonical	3	68	junction_5	39.6722685120083	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATCTTAATTAGAATGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	93296230	93387197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93362985_93363127_93386854
ENSMUSG00000036167.17_93296231_93387197_3	chr15	+	1219	9	FSM	ENSMUSG00000036167.17	ENSMUST00000068457.15	3351	9	-50	2182	0	8	multi-exon	FALSE	canonical	3	14	junction_4	61.4527257328754	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATCTTAATTAGAATGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	93296230	93387197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93349997_93350055_93353331_93353412_93357552_93357673_93362985_93363127_93386854
ENSMUSG00000036167.17_93296231_93387197_4	chr15	+	1249	8	NIC	ENSMUSG00000036167.17	novel	3573	10	NA	NA	0	8	combination_of_known_splicesites	FALSE	canonical	3	55	junction_3	53.2326430464831	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATCTTAATTAGAATGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	93296230	93387197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_93296343_93308572_93308665_93318164_93318372_93321894_93321957_93339381_93339594_93353331_93353412_93362985_93363127_93386854
ENSMUSG00000036168.16_93419259_93425462_1	chr10	+	360	4	Fusion	ENSMUSG00000036168.16_ENSMUSG00000097407.2	novel	1859	4	NA	NA	-6016	5273	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6176	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGACCGGAGCGGCTGCCG	NA	False	NA	NA	False	NA	NA	NA	93419258	93425462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr10_+_93419393_93419891_93419957_93423859_93423986_93425427
ENSMUSG00000036168.16_93419259_93425568_1	chr10	+	482	4	Fusion	ENSMUSG00000036168.16_ENSMUSG00000097407.2	novel	1859	4	NA	NA	-6016	5379	multi-exon	TRUE	non_canonical	0	0	junction_1	0	27607	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGGCCACCAAAGACGTG	NA	False	NA	NA	False	NA	NA	NA	93419258	93425568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr10_+_93419393_93419902_93419957_93423859_93423986_93425400
ENSMUSG00000036168.16_93419261_93425297_1	chr10	+	460	4	Fusion	ENSMUSG00000036168.16_ENSMUSG00000097407.2	novel	1859	4	NA	NA	-6014	5108	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4268	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCAGCCGCGCGGCGCCTCG	NA	False	NA	NA	False	NA	NA	NA	93419260	93425297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr10_+_93419393_93419891_93419957_93423859_93423986_93425160
ENSMUSG00000036185.10_35244935_35246892_1	chr17	-	1089	3	NIC	ENSMUSG00000036185.10	novel	935	4	NA	NA	-2	0	intron_retention	FALSE	canonical	3	19	junction_2	14	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246892	35244934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_35245763_35246419_35246561_35246772
ENSMUSG00000036188.5_36207157_36246453_1	chr12	+	1575	10	FSM	ENSMUSG00000036188.5	ENSMUST00000041640.5	2456	10	44	837	0	38	multi-exon	FALSE	canonical	3	149	junction_5	20.5882622678524	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTGATGTGAATGTACCT	NA	False	NA	NA	False	NA	NA	NA	36207156	36246453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_36207423_36215868_36215934_36220447_36220587_36226578_36226678_36232346_36232508_36236724_36236940_36237648_36237785_36243668_36243798_36244982_36245113_36246218
ENSMUSG00000036199.10_70346830_70354298_1	chr8	-	482	4	NNC	ENSMUSG00000036199.10	novel	1251	5	NA	NA	910	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2953.33171557518	44194	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGACTCTATAGTGACTC	NA	False	NA	-20	True	AATAAA	-17	NA	70354298	70346829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70347061_70347153_70347226_70347891_70347964_70354191
ENSMUSG00000036199.10_70346830_70354298_2	chr8	-	489	4	ISM	ENSMUSG00000036199.10	ENSMUST00000110167.5	1251	5	910	0	910	0	3prime_fragment	FALSE	canonical	3	6124	junction_2	115.905133622286	50161	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGACTCTATAGTGACTC	NA	False	NA	-20	True	AATAAA	-17	NA	70354298	70346829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_70347061_70347153_70347226_70347891_70347971_70354191
ENSMUSG00000036202.17_51962844_51997751_1	chr2	+	3100	26	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	0	14	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_16	121.215748151798	182	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAACTGTCGGCCAAAGT	NA	False	NA	60	True	GATAAA	-10	NA	51962843	51997751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983606_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649
ENSMUSG00000036202.17_51993448_52000845_1	chr2	+	1939	9	ISM	ENSMUSG00000036202.17	ENSMUST00000112693.10	8509	36	30604	11550	-7548	3108	internal_fragment	FALSE	canonical	3	389	junction_5	47.1566538253087	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAGACGAAAGGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	51993447	52000845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922
ENSMUSG00000036208.14_44544664_44557468_1	chr16	+	2687	9	FSM	ENSMUSG00000036208.14	ENSMUST00000048788.14	2866	9	0	179	0	-179	multi-exon	FALSE	canonical	3	32	junction_1	9.69455388349562	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTCCATTACTCAAATG	NA	False	NA	8	True	ATTAAA	-16	NA	44544663	44557468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_44544832_44547390_44547546_44549604_44549685_44549944_44550077_44550482_44550561_44551694_44552060_44552420_44552483_44554903_44555161_44556078
ENSMUSG00000036223.17_74329220_74340850_1	chr18	-	1716	7	FSM	ENSMUSG00000036223.17	ENSMUST00000177604.2	2605	7	39	850	0	330	multi-exon	FALSE	canonical	3	429	junction_6	32.9768437274131	2752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTACGTCTGGTTCCTTG	6765	False	NA	NA	False	NA	NA	NA	74340850	74329219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339859_74339956_74340664
ENSMUSG00000036223.17_74329848_74340850_1	chr18	-	1083	7	NNC	ENSMUSG00000036223.17	novel	2630	7	NA	NA	0	-298	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_5	178.742288100929	766	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATTTTCAAAACGTAC	6765	False	NA	-19	True	AGTAAA	-16	NA	74340850	74329847	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337455_74339859_74339956_74340664
ENSMUSG00000036223.17_74329848_74340850_2	chr18	-	1114	7	NNC	ENSMUSG00000036223.17	novel	2630	7	NA	NA	0	-298	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_5	150.093766988802	1010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATTTTCAAAACGTAC	6765	False	NA	-19	True	AGTAAA	-16	NA	74340850	74329847	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339833_74339956_74340664
ENSMUSG00000036223.17_74329848_74340850_3	chr18	-	1078	7	NNC	ENSMUSG00000036223.17	novel	2630	7	NA	NA	0	-298	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	181.430121228226	780	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATTTTCAAAACGTAC	6765	False	NA	-19	True	AGTAAA	-16	NA	74340850	74329847	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339859_74339946_74340664
ENSMUSG00000036223.17_74329848_74340850_4	chr18	-	1088	7	FSM	ENSMUSG00000036223.17	ENSMUST00000177604.2	2605	7	39	1478	0	-298	multi-exon	FALSE	canonical	3	429	junction_6	32.9768437274131	2553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATTTTCAAAACGTAC	6765	False	NA	-19	True	AGTAAA	-16	NA	74340850	74329847	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339859_74339956_74340664
ENSMUSG00000036249.17_51814460_51825175_1	chr2	-	2213	5	FSM	ENSMUSG00000036249.17	ENSMUST00000102767.8	2057	5	-156	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	2.77263412660235	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGAGCTGCATCATTATT	NA	False	NA	NA	False	ATTAAA	-1	NA	51825175	51814459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_51815947_51816692_51816773_51819671_51819862_51822411_51822536_51824843
ENSMUSG00000036256.14_77458338_77497171_1	chr5	-	3801	25	NIC	ENSMUSG00000036256.14	novel	1200	6	NA	NA	58716	38749	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTCTCAGCGAGGGGGCGG	NA	False	NA	NA	False	NA	NA	NA	77497171	77458337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_77458478_77460997_77461071_77463696_77463848_77467810_77467924_77468057_77468278_77468801_77468961_77471400_77471566_77473585_77473783_77473894_77474015_77474381_77474569_77478979_77479124_77479796_77479937_77480033_77480146_77482263_77482419_77483480_77483680_77484273_77484443_77487167_77487265_77488221_77488317_77490376_77490628_77490707_77490798_77491016_77491125_77492638_77492753_77493097_77493259_77496069_77496266_77496926
ENSMUSG00000036257.16_44315950_44359126_1	chr12	+	3299	10	FSM	ENSMUSG00000036257.16	ENSMUST00000043082.16	13507	10	19	10189	0	0	multi-exon	FALSE	canonical	3	204	junction_3	27.4419701988589	274	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTGGTTTCTTGTAGC	NA	False	NA	63	True	NA	NA	NA	44315949	44359126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_44316085_44329360_44330488_44330575_44330726_44334953_44335106_44337348_44337444_44342680_44342853_44346016_44346075_44351693_44351889_44354701_44354898_44358107
ENSMUSG00000036275.14_52287255_52297907_1	chr11	+	824	3	FSM	ENSMUSG00000036275.14	ENSMUST00000036952.5	2467	3	0	1643	0	-1643	multi-exon	FALSE	canonical	3	140	junction_1	2	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGACTGGCATTTGCTTAG	4558	False	NA	NA	False	NA	NA	NA	52287254	52297907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_52287431_52293872_52294385_52297771
ENSMUSG00000036275.14_52287255_52298055_1	chr11	+	972	3	FSM	ENSMUSG00000036275.14	ENSMUST00000036952.5	2467	3	0	1495	0	-1495	multi-exon	FALSE	canonical	3	140	junction_1	2	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATATGGCTTCTTTTTTCT	4558	False	NA	NA	False	NA	NA	NA	52287254	52298055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_52287431_52293872_52294385_52297771
ENSMUSG00000036282.16_49415508_49425347_1	chr14	+	522	3	FSM	ENSMUSG00000036282.16	ENSMUST00000138478.2	2157	3	152	1483	152	0	multi-exon	FALSE	canonical	3	313	junction_2	8.5	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTCTGTTGGTACCAGCA	NA	False	NA	11	True	ATTAAA	-22	NA	49415507	49425347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_49415633_49418162_49418219_49425006
ENSMUSG00000036291.7_49303988_49311198_1	chr14	+	527	2	FSM	ENSMUSG00000036291.7	ENSMUST00000228238.2	3514	2	35	2952	0	-2952	multi-exon	FALSE	canonical	3	152	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAAGAGCTCTGGCCAGT	NA	False	NA	NA	False	AATAAA	-28	NA	49303987	49311198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_49304322_49311005
ENSMUSG00000036291.7_49303988_49311852_1	chr14	+	1181	2	FSM	ENSMUSG00000036291.7	ENSMUST00000228238.2	3514	2	35	2298	0	-2298	multi-exon	FALSE	canonical	3	152	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACATTATCTTCCTAGTT	NA	False	NA	NA	False	NA	NA	NA	49303987	49311852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_49304322_49311005
ENSMUSG00000036299.6_75138971_75142699_1	chr18	+	742	3	FSM	ENSMUSG00000036299.6	ENSMUST00000237263.2	1266	3	0	524	0	35	multi-exon	FALSE	canonical	3	388	junction_1	205.5	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTTGGCCCTTCGAGTTC	NA	False	NA	NA	False	AATAGA	-31	NA	75138970	75142699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_75139186_75141721_75141898_75142348
ENSMUSG00000036299.6_75138971_75143005_1	chr18	+	834	3	FSM	ENSMUSG00000036299.6	ENSMUST00000236421.2	524	3	31	-341	0	1	multi-exon	FALSE	canonical	3	91	junction_1	354	1839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCTGCTTTTTGTCTTTT	NA	False	NA	27	True	ATTAAA	-18	NA	75138970	75143005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_75138972_75141721_75141898_75142348
ENSMUSG00000036299.6_75138971_75143005_2	chr18	+	1048	3	FSM	ENSMUSG00000036299.6	ENSMUST00000237263.2	1266	3	0	218	0	1	multi-exon	FALSE	canonical	3	388	junction_1	205.5	4853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCTGCTTTTTGTCTTTT	NA	False	NA	27	True	ATTAAA	-18	NA	75138970	75143005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_75139186_75141721_75141898_75142348
ENSMUSG00000036309.15_52122864_52137076_1	chr11	+	803	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	28	609	0	197	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	16836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCATTTTGGGCTTTCCC	439	False	NA	-22	True	AATAAA	-27	NA	52122863	52137076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
ENSMUSG00000036309.15_52122864_52137190_1	chr11	+	917	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	28	495	0	311	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	20210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATGCTGAAATAGAATTAA	439	False	NA	92	True	AATAAA	-15	NA	52122863	52137190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
ENSMUSG00000036309.15_52122864_52137501_1	chr11	+	1228	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	28	184	0	-184	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	30717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTATGTCATCTTTTTA	439	False	NA	14	True	ATTAAA	-17	NA	52122863	52137501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
ENSMUSG00000036352.17_25888555_25911614_1	chr2	-	1568	9	NIC	ENSMUSG00000036352.17	novel	1852	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_1	240.477617201685	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGTGTTACTTCATGGC	NA	False	NA	-3	True	AATAAA	-20	NA	25911614	25888554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_25889080_25896538_25896626_25897730_25897966_25898872_25898982_25899172_25899276_25900533_25900642_25904903_25904978_25906307_25906429_25911408
ENSMUSG00000036371.7_67243995_67261050_1	chr6	+	1372	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	0	245	0	0	multi-exon	FALSE	canonical	3	3189	junction_3	1320.70455841276	19459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACTGTCATTCATACCA	5872	False	NA	38	True	NA	NA	NA	67243994	67261050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUSG00000036371.7_67243995_67261050_2	chr6	+	1417	8	FSM	ENSMUSG00000036371.7	ENSMUST00000042990.7	15474	8	387	13670	0	0	multi-exon	FALSE	canonical	3	2187	junction_4	1676.62542517001	15128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACTGTCATTCATACCA	5872	False	NA	38	True	NA	NA	NA	67243994	67261050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUSG00000036371.7_67243995_67261050_3	chr6	+	1399	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203436.3	1667	8	28	240	0	0	multi-exon	FALSE	canonical	3	2187	junction_4	1760.87005396161	12580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACTGTCATTCATACCA	5872	False	NA	38	True	NA	NA	NA	67243994	67261050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUSG00000036371.7_67243995_67261298_1	chr6	+	1602	8	FSM	ENSMUSG00000036371.7	ENSMUST00000204293.3	1336	8	1	-267	0	3	multi-exon	FALSE	canonical	3	2743	junction_3	1435.93298973887	30905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCACTTCATTTGTGTT	5872	False	NA	40	True	AATATA	-28	NA	67243994	67261298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUSG00000036371.7_67243995_67261298_2	chr6	+	1665	8	FSM	ENSMUSG00000036371.7	ENSMUST00000042990.7	15474	8	387	13422	0	3	multi-exon	FALSE	canonical	3	2187	junction_4	1676.62542517001	29199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCACTTCATTTGTGTT	5872	False	NA	40	True	AATATA	-28	NA	67243994	67261298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUSG00000036371.7_67258764_67261050_1	chr6	+	206	2	ISM	ENSMUSG00000036371.7	ENSMUST00000204294.3	717	5	14709	-52	9901	0	3prime_fragment	FALSE	canonical	3	6747	junction_1	0	1705	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACTGTCATTCATACCA	NA	False	NA	38	True	NA	NA	NA	67258763	67261050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_67258806_67260886
ENSMUSG00000036371.7_67258764_67261298_1	chr6	+	454	2	ISM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	14769	-3	9901	3	3prime_fragment	FALSE	canonical	3	6747	junction_1	0	3929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCACTTCATTTGTGTT	NA	False	NA	40	True	AATATA	-28	NA	67258763	67261298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_67258806_67260886
ENSMUSG00000036372.15_10181582_10185182_1	chr19	+	396	4	FSM	ENSMUSG00000036372.15	ENSMUST00000040372.14	606	4	204	6	0	0	multi-exon	FALSE	canonical	3	2797	junction_1	495.826806679734	33809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGCCTCATGTCCATTC	4181	False	NA	27	True	AATAAA	-16	NA	10181581	10185182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_10181629_10183787_10183898_10184527_10184665_10185080
ENSMUSG00000036376.4_23605713_23608046_1	chr13	-	1289	3	NNC	ENSMUSG00000036376.4	novel	4456	3	NA	NA	-10	-3182	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	116	1073	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTTTTTAGTTTTTCAT	NA	False	NA	-21	True	AATAAA	-17	NA	23608046	23605712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_23606506_23606647_23606853_23607755
ENSMUSG00000036376.4_23605713_23608046_2	chr13	-	1169	3	NNC	ENSMUSG00000036376.4	novel	4456	3	NA	NA	-10	-3182	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	106	252	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTTTTTAGTTTTTCAT	NA	False	NA	-21	True	AATAAA	-17	NA	23608046	23605712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_23606506_23606652_23606853_23607870
ENSMUSG00000036376.4_23605713_23608046_3	chr13	-	1284	3	FSM	ENSMUSG00000036376.4	ENSMUST00000041782.4	4456	3	-10	3182	-10	-3182	multi-exon	FALSE	canonical	3	221	junction_1	5.5	1081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTTTTTAGTTTTTCAT	NA	False	NA	-21	True	AATAAA	-17	NA	23608046	23605712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_23606506_23606652_23606853_23607755
ENSMUSG00000036376.4_23605713_23608046_4	chr13	-	1084	2	NIC	ENSMUSG00000036376.4	novel	4456	3	NA	NA	-10	-3182	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTTTTTAGTTTTTCAT	NA	False	NA	-21	True	AATAAA	-17	NA	23608046	23605712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_23606506_23607755
ENSMUSG00000036390.9_67012080_67014170_1	chr6	-	1092	3	FSM	ENSMUSG00000036390.9	ENSMUST00000151958.2	744	3	15	-363	0	0	multi-exon	FALSE	canonical	3	118	junction_1	0	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATTTCTCAACGTGTGGT	NA	False	NA	-7	True	AATAAA	-19	NA	67014170	67012079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_67012757_67013661_67013900_67013993
ENSMUSG00000036398.14_37259624_37262605_1	chr17	-	1223	3	FSM	ENSMUSG00000036398.14	ENSMUST00000040402.14	1599	3	0	376	0	-376	multi-exon	FALSE	canonical	3	708	junction_2	5	5703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCCATGTCCTGAATATAA	NA	False	NA	NA	False	NA	NA	NA	37262605	37259623	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_37260447_37260768_37260878_37262314
ENSMUSG00000036398.14_37260182_37262392_1	chr17	-	452	3	FSM	ENSMUSG00000036398.14	ENSMUST00000040402.14	1599	3	213	934	-162	0	multi-exon	FALSE	canonical	3	708	junction_2	5	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATTGCCTCCGTTCTCCT	NA	False	NA	-15	True	AATATA	-23	NA	37262392	37260181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_37260447_37260768_37260878_37262314
ENSMUSG00000036398.14_37260182_37262605_1	chr17	-	665	3	FSM	ENSMUSG00000036398.14	ENSMUST00000040402.14	1599	3	0	934	0	0	multi-exon	FALSE	canonical	3	708	junction_2	5	5465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATTGCCTCCGTTCTCCT	NA	False	NA	-15	True	AATATA	-23	NA	37262605	37260181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_37260447_37260768_37260878_37262314
ENSMUSG00000036402.14_66873440_66994931_1	chr6	+	786	5	FSM	ENSMUSG00000036402.14	ENSMUST00000043148.13	4248	5	59	3403	0	18	multi-exon	FALSE	canonical	2	79	junction_3	124.109578598914	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTATATTCTGTTCTTAA	NA	False	NA	21	True	ATTAAA	-27	NA	66873439	66994931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_66873512_66891436_66891495_66920808_66920862_66992708_66992828_66994447
ENSMUSG00000036402.14_66873440_66994931_2	chr6	+	721	4	FSM	ENSMUSG00000036402.14	ENSMUST00000114225.8	1876	4	16	1139	0	18	multi-exon	FALSE	canonical	2	75	junction_1	120.748590974066	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTATATTCTGTTCTTAA	NA	False	NA	21	True	ATTAAA	-27	NA	66873439	66994931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_66873500_66891436_66891495_66992708_66992828_66994447
ENSMUSG00000036402.14_66873440_66994931_3	chr6	+	659	3	NNC	ENSMUSG00000036402.14	novel	680	5	NA	NA	0	18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	46	143	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTATATTCTGTTCTTAA	NA	False	NA	21	True	ATTAAA	-27	NA	66873439	66994931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_66873500_66992716_66992832_66994447
ENSMUSG00000036402.14_66873440_66995141_1	chr6	+	869	3	NNC	ENSMUSG00000036402.14	novel	680	5	NA	NA	0	11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	46	173	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAATGAAAGAACGTTGCA	NA	False	NA	NA	False	NA	NA	NA	66873439	66995141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_66873500_66992716_66992832_66994447
ENSMUSG00000036402.14_66873440_66995141_2	chr6	+	996	5	FSM	ENSMUSG00000036402.14	ENSMUST00000043148.13	4248	5	59	3193	0	11	multi-exon	FALSE	canonical	2	79	junction_3	124.109578598914	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAATGAAAGAACGTTGCA	NA	False	NA	NA	False	NA	NA	NA	66873439	66995141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_66873512_66891436_66891495_66920808_66920862_66992708_66992828_66994447
ENSMUSG00000036402.14_66873440_66995141_3	chr6	+	931	4	FSM	ENSMUSG00000036402.14	ENSMUST00000114225.8	1876	4	16	929	0	11	multi-exon	FALSE	canonical	2	75	junction_1	120.748590974066	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAATGAAAGAACGTTGCA	NA	False	NA	NA	False	NA	NA	NA	66873439	66995141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_66873500_66891436_66891495_66992708_66992828_66994447
ENSMUSG00000036402.14_66873440_66995141_4	chr6	+	943	4	FSM	ENSMUSG00000036402.14	ENSMUST00000114228.8	748	4	33	-228	0	11	multi-exon	FALSE	canonical	2	250	junction_2	52.550504807809	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAATGAAAGAACGTTGCA	NA	False	NA	NA	False	NA	NA	NA	66873439	66995141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_66873512_66891436_66891495_66992708_66992828_66994447
ENSMUSG00000036402.14_66873440_66995257_1	chr6	+	985	3	NNC	ENSMUSG00000036402.14	novel	1125	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	46	199	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTAAGGCTAAAACTGAAAG	NA	False	NA	1	True	AATAAA	-17	NA	66873439	66995257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_66873500_66992716_66992832_66994447
ENSMUSG00000036402.14_66873440_66995257_2	chr6	+	1059	4	FSM	ENSMUSG00000036402.14	ENSMUST00000114228.8	748	4	33	-344	0	0	multi-exon	FALSE	canonical	2	250	junction_2	52.550504807809	753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTAAGGCTAAAACTGAAAG	NA	False	NA	1	True	AATAAA	-17	NA	66873439	66995257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_66873512_66891436_66891495_66992708_66992828_66994447
ENSMUSG00000036402.14_66873440_66995257_3	chr6	+	1112	5	FSM	ENSMUSG00000036402.14	ENSMUST00000043148.13	4248	5	59	3077	0	0	multi-exon	FALSE	canonical	2	79	junction_3	124.109578598914	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTAAGGCTAAAACTGAAAG	NA	False	NA	1	True	AATAAA	-17	NA	66873439	66995257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_66873512_66891436_66891495_66920808_66920862_66992708_66992828_66994447
ENSMUSG00000036427.6_33901584_33929722_1	chr7	-	2016	18	FSM	ENSMUSG00000036427.6	ENSMUST00000038027.6	2884	18	39	829	-8	0	multi-exon	FALSE	canonical	3	1600	junction_15	166.521152162862	4248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGGGCTCAGCCTCTTC	NA	False	NA	-41	True	AATAAA	-16	NA	33929722	33901583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
ENSMUSG00000036438.15_87740840_87754296_1	chr17	-	1115	5	NNC	ENSMUSG00000036438.15	novel	1205	6	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	3032.59397010216	6347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGCTCTGAATCTGAGT	NA	False	NA	-5	True	AATAAA	-21	NA	87754296	87740839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87754212
ENSMUSG00000036438.15_87740840_87754296_2	chr17	-	1107	5	FSM	ENSMUSG00000036438.15	ENSMUST00000234406.2	842	5	-12	-253	-12	0	multi-exon	FALSE	canonical	3	65	junction_4	3004.56365384393	6254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGCTCTGAATCTGAGT	NA	False	NA	-5	True	AATAAA	-21	NA	87754296	87740839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87754220
ENSMUSG00000036450.5_44551289_44559635_1	chr19	+	1116	8	FSM	ENSMUSG00000036450.5	ENSMUST00000040455.5	6194	8	0	5078	0	-5078	multi-exon	FALSE	canonical	3	98	junction_5	13.1583759310508	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCCACATGCTTCGTT	NA	False	NA	NA	False	NA	NA	NA	44551288	44559635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_44551494_44551728_44551980_44554316_44554466_44556773_44556920_44557842_44557950_44558331_44558396_44558665_44558777_44559552
ENSMUSG00000036452.19_39419282_39440426_1	chr18	+	1104	4	NIC	ENSMUSG00000036452.19	novel	2515	12	NA	NA	-5206	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_3	5.8878405775519	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGACTTTGAGCGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	39419281	39440426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_39419740_39429837_39429977_39439754_39439906_39440070
ENSMUSG00000036503.14_57643506_57742252_1	chr3	+	2265	10	NIC	ENSMUSG00000036503.14	novel	2678	10	NA	NA	0	-288	combination_of_known_junctions	FALSE	canonical	3	29	junction_5	45.5520323840878	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTATTGTTCTGGTGAA	NA	False	NA	22	True	AATAAA	-22	NA	57643505	57742252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703717_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
ENSMUSG00000036503.14_57643506_57742252_2	chr3	+	2255	10	FSM	ENSMUSG00000036503.14	ENSMUST00000041826.14	2678	10	23	400	0	-288	multi-exon	FALSE	canonical	3	101	junction_9	27.8053196793192	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTATTGTTCTGGTGAA	NA	False	NA	22	True	AATAAA	-22	NA	57643505	57742252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
ENSMUSG00000036504.7_25463442_25464890_1	chr2	-	591	3	FSM	ENSMUSG00000036504.7	ENSMUST00000039156.7	937	3	346	0	0	0	multi-exon	FALSE	canonical	3	774	junction_2	2.5	9345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGACTTGTGTCTTGC	5546	False	NA	-8	True	ATTAAA	-20	NA	25464890	25463441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25463712_25464199_25464325_25464694
ENSMUSG00000036504.7_25463442_25464890_2	chr2	-	560	3	NNC	ENSMUSG00000036504.7	novel	937	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	387.5	4935	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGACTTGTGTCTTGC	5546	False	NA	-8	True	ATTAAA	-20	NA	25464890	25463441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_25463712_25464199_25464325_25464725
ENSMUSG00000036513.16_57553780_57559129_1	chr3	-	975	5	FSM	ENSMUSG00000036513.16	ENSMUST00000160959.8	2992	5	7	2010	0	0	multi-exon	FALSE	canonical	3	518	junction_3	10.5593560409714	5077	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCTAGACAGTTC	NA	False	NA	-11	True	AATAAA	-19	NA	57559129	57553779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_57554298_57557462_57557637_57558111_57558195_57558842_57558921_57559007
ENSMUSG00000036533.10_79641436_79650119_1	chr17	-	1820	2	NNC	ENSMUSG00000036533.10	novel	2265	2	NA	NA	10317	-280	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTTTATTGCAAAGTCTA	NA	False	NA	-12	True	AATATA	-17	NA	79650119	79641435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_79643146_79650009
ENSMUSG00000036533.10_79641436_79662520_1	chr17	-	1985	2	FSM	ENSMUSG00000036533.10	ENSMUST00000068958.9	2265	2	0	280	0	-280	multi-exon	FALSE	canonical	3	71	junction_1	0	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTTTATTGCAAAGTCTA	NA	False	NA	-12	True	AATATA	-17	NA	79662520	79641435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_79643146_79662245
ENSMUSG00000036533.10_79641893_79650177_1	chr17	-	1421	2	NNC	ENSMUSG00000036533.10	novel	2265	2	NA	NA	10259	733	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	79650177	79641892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_79643146_79650009
ENSMUSG00000036533.10_79641893_79662520_1	chr17	-	1528	2	FSM	ENSMUSG00000036533.10	ENSMUST00000068958.9	2265	2	0	737	0	733	multi-exon	FALSE	canonical	3	71	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	79662520	79641892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_79643146_79662245
ENSMUSG00000036534.7_96562548_96563164_1	chr8	-	589	2	NNC	ENSMUSG00000036534.7	novel	3333	12	NA	NA	5143	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	379	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCTTTATCTTCT	NA	False	NA	0	True	AATAAA	-19	NA	96563164	96562547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_96563105_96563132
ENSMUSG00000036552.20_15261877_15268187_1	chr17	+	894	6	ISM	ENSMUSG00000036552.20	ENSMUST00000097393.11	2535	18	407	15925	0	313	5prime_fragment	FALSE	canonical	3	116	junction_1	50.8173198821032	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGTTCGAGGCCAGCCT	NA	False	NA	NA	False	NA	NA	NA	15261876	15268187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_15261909_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826
ENSMUSG00000036552.20_15264405_15272792_1	chr17	+	627	3	NNC	ENSMUSG00000036552.20	novel	1019	4	NA	NA	-252	466	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTCCTTCTCCCCACCA	NA	False	NA	NA	False	NA	NA	NA	15264404	15272792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_15264753_15271322_15271527_15272717
ENSMUSG00000036552.20_15264405_15273645_1	chr17	+	643	3	NNC	ENSMUSG00000036552.20	novel	1019	4	NA	NA	-252	153	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	174	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGTACCACAGAGGGAGG	NA	False	NA	NA	False	NA	NA	NA	15264404	15273645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_15264753_15271322_15271527_15273554
ENSMUSG00000036552.20_15280213_15310307_1	chr17	+	455	3	ISM	ENSMUSG00000036552.20	ENSMUST00000231568.2	1342	8	7109	-1	497	1	3prime_fragment	FALSE	canonical	0	0	junction_2	48	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTATTGTCATGTGTTAAT	NA	False	NA	NA	False	NA	NA	NA	15280212	15310307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_15280247_15281330_15281445_15310000
ENSMUSG00000036572.17_36355331_36359447_1	chrX	-	513	3	NNC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	8729	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	137	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGTTTATTTATTCAAG	NA	False	NA	-1	True	AATAAA	-24	NA	36359447	36355330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_36355463_36356206_36356315_36359174
ENSMUSG00000036572.17_36355331_36373975_1	chrX	-	2383	11	NIC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	132	junction_3	55.9360348970143	1811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGTTTATTTATTCAAG	NA	False	NA	-1	True	AATAAA	-24	NA	36373975	36355330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_36356315_36359174_36359476_36360510_36360672_36362718_36362758_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
ENSMUSG00000036580.16_55019534_55043378_1	chr3	+	2400	9	FSM	ENSMUSG00000036580.16	ENSMUST00000044116.14	3770	9	5	1365	0	-1354	multi-exon	TRUE	canonical	0	0	junction_4	65.469339197826	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAATGTCAACCTATTTTT	NA	False	NA	15	True	AATAAA	-26	NA	55019533	55043378	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_55019639_55024404_55025217_55029020_55029219_55032175_55032347_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
ENSMUSG00000036598.5_96274851_96285518_1	chr8	+	593	4	NNC	ENSMUSG00000036598.5	novel	1288	9	NA	NA	14138	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5.90668171555645	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTCCTCTCACTTGTTG	NA	False	NA	NA	False	ATTAAA	-23	NA	96274850	96285518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_96275026_96277824_96277933_96283818_96283975_96285364
ENSMUSG00000036599.11_140491330_140510993_1	chr5	+	1820	2	FSM	ENSMUSG00000036599.11	ENSMUST00000043050.9	2331	2	25	486	0	-486	multi-exon	FALSE	canonical	3	68	junction_1	0	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCATTCCTGTGGTTC	NA	False	NA	19	True	AGTAAA	-15	NA	140491329	140510993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_140491452_140509295
ENSMUSG00000036599.11_140491330_140510993_2	chr5	+	1851	2	FSM	ENSMUSG00000036599.11	ENSMUST00000124142.2	766	2	0	-1085	0	-486	multi-exon	FALSE	canonical	3	9	junction_1	0	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCATTCCTGTGGTTC	NA	False	NA	19	True	AGTAAA	-15	NA	140491329	140510993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_140491483_140509295
ENSMUSG00000036613.9_28801838_28917490_1	chr12	+	1675	9	NNC	ENSMUSG00000036613.9	novel	1747	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	87.720347554031	501	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGGCTCTTTGTTTGTTTT	1134	False	NA	7	True	NA	NA	NA	28801837	28917490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_28802004_28810068_28810153_28816770_28816904_28878712_28878864_28897555_28897656_28909250_28909388_28912953_28913122_28914668_28914834_28916919
ENSMUSG00000036615.8_54711642_54714699_1	chr3	-	543	3	FSM	ENSMUSG00000036615.8	ENSMUST00000044373.6	2162	3	513	1106	142	0	multi-exon	FALSE	canonical	3	271	junction_1	17.5	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAATATTGAATTTTT	NA	False	NA	-28	True	NA	NA	NA	54714699	54711641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_54711997_54712780_54712889_54714619
ENSMUSG00000036615.8_54711642_54714841_1	chr3	-	685	3	FSM	ENSMUSG00000036615.8	ENSMUST00000044373.6	2162	3	371	1106	0	0	multi-exon	FALSE	canonical	3	271	junction_1	17.5	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAATATTGAATTTTT	NA	False	NA	-28	True	NA	NA	NA	54714841	54711641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_54711997_54712780_54712889_54714619
ENSMUSG00000036632.10_54642980_54656858_1	chr3	+	1099	10	NNC	ENSMUSG00000036632.10	novel	1471	10	NA	NA	0	-358	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	161.777243588862	2777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCTTTGTATATTCTTG	NA	False	NA	21	True	AATAAA	-25	NA	54642979	54656858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54643071_54646202_54646375_54646682_54646730_54648799_54648875_54649567_54649661_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656115_54656649
ENSMUSG00000036632.10_54642980_54656858_2	chr3	+	1057	10	NNC	ENSMUSG00000036632.10	novel	1471	10	NA	NA	0	-358	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_5	162.856295056428	2658	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCTTTGTATATTCTTG	NA	False	NA	21	True	AATAAA	-25	NA	54642979	54656858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_54643071_54646202_54646375_54646682_54646730_54648799_54648869_54649567_54649625_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656115_54656649
ENSMUSG00000036639.13_140317709_140323696_1	chr5	+	741	5	NNC	ENSMUSG00000036639.13	novel	744	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	84.8071341338687	836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTTGTGGCACCTTTAA	NA	False	NA	53	True	NA	NA	NA	140317708	140323696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_140317711_140318149_140318229_140320209_140320375_140321067_140321214_140323347
ENSMUSG00000036639.13_140317709_140323696_2	chr5	+	662	4	FSM	ENSMUSG00000036639.13	ENSMUST00000071881.10	952	4	94	196	0	0	multi-exon	FALSE	canonical	3	19	junction_1	90.7450641449256	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTTGTGGCACCTTTAA	NA	False	NA	53	True	NA	NA	NA	140317708	140323696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_140317711_140320209_140320375_140321067_140321214_140323347
ENSMUSG00000036639.13_140317709_140323696_3	chr5	+	764	5	NNC	ENSMUSG00000036639.13	novel	744	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	85.2214028281628	774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTTGTGGCACCTTTAA	NA	False	NA	53	True	NA	NA	NA	140317708	140323696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_140317762_140318177_140318229_140320209_140320375_140321067_140321214_140323347
ENSMUSG00000036639.13_140317709_140323892_1	chr5	+	809	5	NNC	ENSMUSG00000036639.13	novel	954	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	79.3737204621278	241	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317708	140323892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_140317711_140318177_140318229_140320209_140320375_140321067_140321114_140323347
ENSMUSG00000036639.13_140317709_140323892_2	chr5	+	937	5	NNC	ENSMUSG00000036639.13	novel	954	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	84.8071341338687	2404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317708	140323892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_140317711_140318149_140318229_140320209_140320375_140321067_140321214_140323347
ENSMUSG00000036639.13_140317709_140323892_3	chr5	+	903	5	NNC	ENSMUSG00000036639.13	novel	954	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	80.4518489532714	1719	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317708	140323892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_140317711_140318177_140318229_140320209_140320375_140321067_140321208_140323347
ENSMUSG00000036646.14_25222785_25232222_1	chr2	+	1188	5	ISM	ENSMUSG00000036646.14	ENSMUST00000149464.8	2030	6	11	2338	0	-1070	5prime_fragment	FALSE	canonical	3	358	junction_4	24.7285260377565	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAAAGATTCAATCCAA	4009	False	NA	NA	False	NA	NA	NA	25222784	25232222	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618
ENSMUSG00000036672.6_106571309_106578640_1	chr8	-	1733	12	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_11	63.6958163837578	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAAGTTAGCGATATT	NA	False	NA	NA	False	ATTAAA	-12	NA	106578640	106571308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576402_106578502
ENSMUSG00000036672.6_106571309_106578640_2	chr8	-	1765	13	NNC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	64.7681227319599	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAAGTTAGCGATATT	NA	False	NA	NA	False	ATTAAA	-12	NA	106578640	106571308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573426_106573611_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
ENSMUSG00000036672.6_106571309_106578640_3	chr8	-	1887	12	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	157	junction_3	26.0254166931019	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAAGTTAGCGATATT	NA	False	NA	NA	False	ATTAAA	-12	NA	106578640	106571308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576556_106578502
ENSMUSG00000036686.17_84859466_84860169_1	chr8	-	546	3	ISM	ENSMUSG00000036686.17	ENSMUST00000117424.9	3262	28	14325	9	3248	0	3prime_fragment	FALSE	canonical	3	73	junction_2	18	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCAGCTTTGTCTTT	NA	False	NA	-10	True	AATGAA	-15	NA	84860169	84859465	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_84859887_84859960_84860009_84860092
ENSMUSG00000036693.13_34809176_34817492_1	chr5	-	1017	7	ISM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	0	13296	0	-7783	5prime_fragment	FALSE	canonical	3	566	junction_2	34.2851603791235	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAACCAAAACATACATCAG	NA	False	NA	NA	False	AATAAA	-3	NA	34817492	34809175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
ENSMUSG00000036743.5_14839246_14865186_1	chr18	+	714	5	NNC	ENSMUSG00000036743.5	novel	1023	6	NA	NA	0	658	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	35.0142828000232	106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTACACTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	14839245	14865186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_14839390_14854223_14854351_14859560_14859686_14864035_14864159_14864991
ENSMUSG00000036743.5_14839246_14895355_1	chr18	+	1527	6	NIC	ENSMUSG00000036743.5	novel	1692	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	33.7792835921664	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAGAGTGTCTCCTTCAA	NA	False	NA	10	True	NA	NA	NA	14839245	14895355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_14839390_14859560_14859686_14864035_14864159_14890338_14890459_14890678_14890742_14894403
ENSMUSG00000036748.17_46318985_46327056_1	chr19	-	627	5	NIC	ENSMUSG00000036748.17	novel	999	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	450.065759084159	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	-2	True	NA	-8	True	AGTAAA	-13	NA	46327056	46318984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_46319274_46319358_46319420_46320351_46320496_46321056_46321141_46327007
ENSMUSG00000036748.17_46318985_46327056_2	chr19	-	1164	10	FSM	ENSMUSG00000036748.17	ENSMUST00000167861.8	1941	10	43	734	0	0	multi-exon	FALSE	canonical	3	50	junction_9	353.322781114268	2330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	-2	True	NA	-8	True	AGTAAA	-13	NA	46327056	46318984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46327007
ENSMUSG00000036748.17_46318985_46327056_3	chr19	-	734	9	NNC	ENSMUSG00000036748.17	novel	999	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	394.434860750162	132	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	-2	True	NA	-8	True	AGTAAA	-13	NA	46327056	46318984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_46319006_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46327007
ENSMUSG00000036748.17_46318985_46327056_4	chr19	-	1053	9	FSM	ENSMUSG00000036748.17	ENSMUST00000235485.2	1790	9	3	734	0	0	multi-exon	FALSE	canonical	3	133	junction_8	321.93700859019	2275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	-2	True	NA	-8	True	AGTAAA	-13	NA	46327056	46318984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321138_46327007
ENSMUSG00000036748.17_46318985_46327056_5	chr19	-	1213	10	NIC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	123	junction_9	336.420298561116	2754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	-2	True	NA	-8	True	AGTAAA	-13	NA	46327056	46318984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46326958
ENSMUSG00000036748.17_46318985_46327056_6	chr19	-	1166	10	NIC	ENSMUSG00000036748.17	novel	999	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	89	junction_9	397.279576278966	1603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	-2	True	NA	-8	True	AGTAAA	-13	NA	46327056	46318984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46326751_46326870_46326958
ENSMUSG00000036748.17_46318985_46327056_7	chr19	-	1107	10	NIC	ENSMUSG00000036748.17	novel	999	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	50	junction_9	404.731033992383	1192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	-2	True	NA	-8	True	AGTAAA	-13	NA	46327056	46318984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46326751_46326860_46327007
ENSMUSG00000036748.17_46318985_46327056_8	chr19	-	1098	10	NIC	ENSMUSG00000036748.17	novel	999	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	122	junction_9	391.163632837104	1060	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	-2	True	NA	-8	True	AGTAAA	-13	NA	46327056	46318984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46326751_46326851_46327007
ENSMUSG00000036748.17_46318985_46327115_1	chr19	-	847	9	NNC	ENSMUSG00000036748.17	novel	1833	9	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	383.15205858771	288	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5806	False	NA	-8	True	AGTAAA	-13	NA	46327115	46318984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_46319006_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46327007
ENSMUSG00000036751.8_30316399_30325539_2	chr7	-	441	4	NNC	ENSMUSG00000036751.8	novel	618	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2835.05108713523	12761	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATTGTGTGTATTACAC	NA	False	NA	-4	True	AATAAA	-18	NA	30325539	30316398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_30316588_30322839_30322941_30323924_30324039_30325502
ENSMUSG00000036751.8_30316399_30325539_3	chr7	-	503	4	NIC	ENSMUSG00000036751.8	novel	618	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	32	junction_1	2827.00564005254	33097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATTGTGTGTATTACAC	NA	False	NA	-4	True	AATAAA	-18	NA	30325539	30316398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_30316588_30322804_30322941_30323924_30324039_30325475
ENSMUSG00000036751.8_30316399_30325539_4	chr7	-	465	4	NNC	ENSMUSG00000036751.8	novel	369	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2842.01806233998	38108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATTGTGTGTATTACAC	NA	False	NA	-4	True	AATAAA	-18	NA	30325539	30316398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_30316581_30322835_30322941_30323924_30324039_30325475
ENSMUSG00000036751.8_30316399_30325539_5	chr7	-	451	4	NNC	ENSMUSG00000036751.8	novel	618	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2659.70491262137	26491	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATTGTGTGTATTACAC	NA	False	NA	-4	True	AATAAA	-18	NA	30325539	30316398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_30316588_30322839_30322924_30323924_30324039_30325475
ENSMUSG00000036752.5_25112172_25114669_1	chr2	-	1552	4	NNC	ENSMUSG00000036752.5	novel	1598	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	639.312651733615	4557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCGCCTGTCCAATTCCT	NA	False	NA	-24	True	ATTAAA	-18	NA	25114669	25112171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_25113376_25113941_25114057_25114135_25114245_25114545
ENSMUSG00000036764.13_63222350_63244606_1	chr10	+	1268	5	FSM	ENSMUSG00000036764.13	ENSMUST00000043317.7	3025	5	8	1749	0	0	multi-exon	TRUE	canonical	3	25	junction_2	1.58113883008419	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATGCATTTAGGATGCAA	NA	False	NA	NA	False	AATAAA	-19	NA	63222349	63244606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_63222555_63231563_63231643_63233017_63233158_63242780_63242986_63243967
ENSMUSG00000036768.7_122780144_122815560_1	chr9	+	1408	13	ISM	ENSMUSG00000036768.7	ENSMUST00000040717.7	4858	35	33	32238	0	12	5prime_fragment	FALSE	canonical	3	157	junction_12	27.0651220823652	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTATTCAGTCTAATAAAAT	NA	False	NA	NA	False	AATAGA	-44	NA	122780143	122815560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_122780218_122788181_122788225_122788871_122789056_122792544_122792622_122795013_122795052_122800753_122800852_122804713_122804894_122806904_122807115_122808534_122808661_122808804_122808928_122813864_122813989_122815209_122815287_122815506
ENSMUSG00000036768.7_122843004_122847798_1	chr9	+	1076	5	ISM	ENSMUSG00000036768.7	ENSMUST00000216062.2	669	6	2289	-504	228	0	3prime_fragment	FALSE	canonical	3	211	junction_3	21.7944947177034	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTATAAATACTATGCCT	NA	False	NA	8	True	AATAAA	-18	NA	122843003	122847798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_122843078_122843533_122843572_122846309_122846476_122846651_122846784_122847132
ENSMUSG00000036777.9_22243308_22274116_1	chr9	-	2685	15	ISM	ENSMUSG00000036777.9	ENSMUST00000040912.9	4605	24	26368	0	-6654	0	3prime_fragment	FALSE	canonical	3	398	junction_4	60.5217535524312	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATCAGTTATTTAAGAAAT	NA	False	NA	-3	True	AATAAA	-20	NA	22274116	22243307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_22244470_22245297_22245471_22249227_22249336_22250297_22250385_22262215_22262329_22263171_22263194_22263509_22263549_22264078_22264136_22264625_22264675_22267347_22267475_22269415_22269599_22269908_22270045_22271705_22271854_22272117_22272264_22273981
ENSMUSG00000036782.14_23085525_23185152_1	chrX	-	3319	8	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3734	0	at_least_one_novel_splicesite	FALSE	canonical	3	222	junction_7	307.654590309938	1907	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23185152	23085524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23184851
ENSMUSG00000036782.14_23085525_23227934_1	chrX	-	3220	8	ISM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	3387	15	3358	0	3prime_fragment	FALSE	canonical	3	772	junction_6	153.107671864193	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23227934	23085524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
ENSMUSG00000036810.17_88845397_88861120_1	chr8	+	1117	6	FSM	ENSMUSG00000036810.17	ENSMUST00000095214.10	1731	6	0	614	0	12	multi-exon	FALSE	canonical	3	147	junction_2	26.3256528883901	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAACACCCCAAACTC	NA	False	NA	NA	False	AGTAAA	-43	NA	88845396	88861120	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88856433_88856974_88857030_88860415
ENSMUSG00000036810.17_88845397_88861738_1	chr8	+	1730	6	NNC	ENSMUSG00000036810.17	novel	1731	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_4	65.6761752844972	443	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTGGTTAGAGATTTTCT	NA	False	NA	13	True	AATAAA	-15	NA	88845396	88861738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88856433_88856979_88857030_88860415
ENSMUSG00000036817.15_139186422_139214105_1	chr5	+	900	7	NNC	ENSMUSG00000036817.15	novel	1522	7	NA	NA	0	10	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	366.601509362232	58	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTTCTAGCTGCCTTTG	NA	False	NA	NA	False	NA	NA	NA	139186421	139214105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139213919
ENSMUSG00000036817.15_139186422_139220579_1	chr5	+	1104	10	ISM	ENSMUSG00000036817.15	ENSMUST00000110883.9	3714	20	24	14971	0	281	5prime_fragment	FALSE	canonical	3	84	junction_6	283.877125218328	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCCAAAGGTAACCAGCAAG	NA	False	NA	NA	False	NA	NA	NA	139186421	139220579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219225_139219325_139219655_139219750_139220269_139220329_139220441
ENSMUSG00000036817.15_139186422_139220579_2	chr5	+	1473	13	ISM	ENSMUSG00000036817.15	ENSMUST00000058716.14	4134	23	30	15016	0	281	5prime_fragment	FALSE	canonical	3	426	junction_7	211.809203975863	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCCAAAGGTAACCAGCAAG	NA	False	NA	NA	False	NA	NA	NA	139186421	139220579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441
ENSMUSG00000036817.15_139227742_139235550_1	chr5	+	1796	5	ISM	ENSMUSG00000036817.15	ENSMUST00000110882.8	2454	19	29960	-1152	633	0	3prime_fragment	FALSE	canonical	3	873	junction_4	41.2492424172857	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	9985	False	NA	-12	True	AATAAA	-21	NA	139227741	139235550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ENSMUSG00000036819.15_59340871_59346932_1	chr11	+	1898	6	FSM	ENSMUSG00000036819.15	ENSMUST00000147163.8	4359	6	0	2461	0	0	multi-exon	FALSE	canonical	3	27	junction_3	10.3614670775909	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGAGTTCCTTTTTTATA	9481	False	NA	15	True	NA	NA	NA	59340870	59346932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_59341339_59341500_59341667_59344336_59344472_59344703_59344886_59345758_59345906_59346132
ENSMUSG00000036820.13_24374807_24382667_1	chr17	-	1415	11	NNC	ENSMUSG00000036820.13	novel	1496	11	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	102.76619093846	1155	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382667	24374806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_24375060_24375544_24375647_24376501_24376563_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382169_24382307_24382555
ENSMUSG00000036820.13_24374807_24382706_1	chr17	-	1325	10	NIC	ENSMUSG00000036820.13	novel	1496	11	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_9	102.741435015946	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382706	24374806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382555
ENSMUSG00000036820.13_24374807_24382706_2	chr17	-	1542	10	NIC	ENSMUSG00000036820.13	novel	1496	11	NA	NA	-2	0	intron_retention	FALSE	canonical	3	306	junction_8	20.5804653872442	1217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382706	24374806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382307_24382555
ENSMUSG00000036825.13_146136723_146145899_1	chr3	+	2193	6	ISM	ENSMUSG00000036825.13	ENSMUST00000106153.9	3446	14	26326	0	439	0	3prime_fragment	FALSE	canonical	3	150	junction_2	16.9162643630324	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTGTTGTCCATTCAC	NA	False	NA	22	True	ATTAAA	-24	NA	146136722	146145899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_146136835_146138235_146138373_146138727_146138902_146142297_146142413_146142930_146143097_146144410
ENSMUSG00000036833.17_24942327_24944069_1	chr2	+	680	4	ISM	ENSMUSG00000036833.17	ENSMUST00000132082.8	2018	13	12809	0	407	0	3prime_fragment	FALSE	canonical	3	35	junction_3	8.05536398239638	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGCTATTTTACTCTG	7462	False	NA	10	True	AATAAA	-13	NA	24942326	24944069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_24942431_24942564_24942650_24943406_24943511_24943682
ENSMUSG00000036835.8_30261288_30262666_1	chr7	-	659	4	NIC	ENSMUSG00000036835.8	novel	708	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	381.68660792156	4743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTTCTTGGGATCTTTC	1290	False	NA	-3	True	AATAAA	-19	NA	30262666	30261287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_30261560_30261748_30261854_30262220_30262313_30262476
ENSMUSG00000036835.8_30261288_30263052_1	chr7	-	639	4	FSM	ENSMUSG00000036835.8	ENSMUST00000208628.2	488	4	0	-151	0	0	multi-exon	FALSE	canonical	3	17	junction_3	378.867611002401	2296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTTCTTGGGATCTTTC	904	False	NA	-3	True	AATAAA	-19	NA	30263052	30261287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30261560_30261748_30261854_30262220_30262364_30262933
ENSMUSG00000036835.8_30262754_30264785_1	chr7	-	871	8	Genic_Genomic	ENSMUSG00000036835.8	novel	488	4	NA	NA	-1733	-962	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2956	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGCGTCACTTCCGTT	NA	False	NA	NA	False	NA	NA	NA	30264785	30262753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUSG00000036845.13_30254869_30259064_2	chr7	-	985	9	NNC	ENSMUSG00000036845.13	novel	998	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	88.9536396107545	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGACAAATCTCAAGTGCAT	4892	False	NA	-9	True	NA	NA	NA	30259064	30254868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_30255027_30255108_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257384_30258866
ENSMUSG00000036845.13_30254869_30259064_3	chr7	-	1021	9	NIC	ENSMUSG00000036845.13	novel	998	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_7	84.2229184960958	826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGACAAATCTCAAGTGCAT	4892	False	NA	-9	True	NA	NA	NA	30259064	30254868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257274_30257384_30258866
ENSMUSG00000036845.13_30254869_30259064_4	chr7	-	1194	8	NIC	ENSMUSG00000036845.13	novel	998	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	222	junction_2	24.3922035051517	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGACAAATCTCAAGTGCAT	4892	False	NA	-9	True	NA	NA	NA	30259064	30254868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257384_30258866
ENSMUSG00000036845.13_30254869_30259064_5	chr7	-	990	8	NNC	ENSMUSG00000036845.13	novel	998	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	93.975463580139	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGACAAATCTCAAGTGCAT	4892	False	NA	-9	True	NA	NA	NA	30259064	30254868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30257018_30257102_30257307_30257384_30258866
ENSMUSG00000036854.15_30251949_30254865_1	chr7	+	2104	3	FSM	ENSMUSG00000036854.15_ENSMUSG00000106236.3	ENSMUST00000044048.8	1363	3	-744	3	0	0	multi-exon	FALSE	canonical	3	14	junction_1	10.5	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTGCCTTATGTCTGGGC	NA	False	NA	9	True	AATAAA	-17	NA	30251948	30254865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30252958_30253686_30253810_30253893
ENSMUSG00000036860.15_59093331_59096714_1	chr11	+	681	4	FSM	ENSMUSG00000036860.15	ENSMUST00000045697.12	940	4	13	246	0	0	multi-exon	FALSE	canonical	3	484	junction_1	41.3467720088952	3628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093330	59096714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_59093486_59094997_59095082_59095381_59095584_59096474
ENSMUSG00000036860.15_59093331_59096714_2	chr11	+	597	3	NIC	ENSMUSG00000036860.15	novel	792	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	65	junction_1	260	896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093330	59096714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_59093486_59095381_59095584_59096474
ENSMUSG00000036867.8_63860527_63883386_1	chr9	-	908	2	NNC	ENSMUSG00000036867.8	novel	2971	4	NA	NA	40883	-169	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCCTCTTTCCTTTTTTA	NA	False	NA	-1	True	AATACA	-19	NA	63883386	63860526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_63861339_63883290
ENSMUSG00000036867.8_63860646_63883386_1	chr9	-	789	2	NNC	ENSMUSG00000036867.8	novel	2971	4	NA	NA	40883	-288	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGGAGTCATTTTTACAA	NA	False	NA	-120	True	NA	NA	NA	63883386	63860645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_63861339_63883290
ENSMUSG00000036873.14_145643797_145650032_1	chr3	+	967	3	FSM	ENSMUSG00000036873.14	ENSMUST00000039571.14	1547	3	28	552	0	35	multi-exon	FALSE	canonical	3	242	junction_2	10.5	973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTTATTACTGAATGCC	NA	False	NA	25	True	AATAAA	-15	NA	145643796	145650032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_145644084_145644652_145644852_145649551
ENSMUSG00000036873.14_145643797_145650032_2	chr3	+	1094	4	FSM	ENSMUSG00000036873.14	ENSMUST00000134575.8	1644	4	0	550	0	35	multi-exon	FALSE	canonical	3	101	junction_2	61.937244225282	998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTTATTACTGAATGCC	NA	False	NA	25	True	AATAAA	-15	NA	145643796	145650032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_145644084_145644297_145644425_145644652_145644852_145649551
ENSMUSG00000036873.14_145643797_145650032_3	chr3	+	1129	4	FSM	ENSMUSG00000036873.14	ENSMUST00000152783.2	514	4	-148	-467	0	35	multi-exon	FALSE	canonical	3	74	junction_3	20.0388511535855	718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTTATTACTGAATGCC	NA	False	NA	25	True	AATAAA	-15	NA	145643796	145650032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_145644084_145644297_145644425_145644652_145644852_145649516
ENSMUSG00000036875.16_62782805_62785816_1	chr10	+	999	2	FSM	ENSMUSG00000036875.16	ENSMUST00000131715.2	603	2	-54	-342	0	342	multi-exon	FALSE	canonical	3	331	junction_1	0	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGATTATGATTTTGGGTT	NA	False	NA	NA	False	AATAAA	-13	NA	62782804	62785816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_62782949_62784961
ENSMUSG00000036880.11_74912117_74939279_1	chr18	+	1667	10	FSM	ENSMUSG00000036880.11	ENSMUST00000041053.11	1516	10	-151	0	-151	0	multi-exon	FALSE	canonical	3	191	junction_8	17.7325814376939	1315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAACCTTTTCTTGTTGGT	NA	False	NA	13	True	AATAAA	-17	NA	74912116	74939279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_74912337_74920189_74920357_74925421_74925551_74926357_74926475_74928201_74928350_74931382_74931559_74932115_74932246_74934367_74934439_74937071_74937227_74938925
ENSMUSG00000036898.17_138439741_138455929_1	chr5	+	2270	5	FSM	ENSMUSG00000036898.17	ENSMUST00000100524.3	869	5	-61	-1340	0	1340	multi-exon	FALSE	canonical	3	9	junction_4	23.7276210354093	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTGCTTATGTTCCGTT	NA	False	NA	NA	False	AATAAA	-13	NA	138439740	138455929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_138439892_138443013_138443141_138445776_138445870_138453241_138453352_138454140
ENSMUSG00000036898.17_138439741_138456925_1	chr5	+	3266	5	FSM	ENSMUSG00000036898.17	ENSMUST00000100524.3	869	5	-61	-2336	0	-2031	multi-exon	FALSE	canonical	3	9	junction_4	23.7276210354093	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGAATGACGGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	138439740	138456925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_138439892_138443013_138443141_138445776_138445870_138453241_138453352_138454140
ENSMUSG00000036932.15_47563821_47602303_1	chrX	-	2094	16	NNC	ENSMUSG00000036932.15	novel	2237	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	301.286530288583	2104	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602303	47563820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586330_47588648_47588749_47593686_47593830_47602112
ENSMUSG00000036932.15_47563821_47602303_2	chrX	-	2094	16	NNC	ENSMUSG00000036932.15	novel	2237	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	301.622383490056	2078	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602303	47563820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572134_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
ENSMUSG00000036932.15_47563821_47602436_2	chrX	-	2227	16	NNC	ENSMUSG00000036932.15	novel	2237	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	301.286530288583	2221	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602436	47563820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586330_47588648_47588749_47593686_47593830_47602112
ENSMUSG00000036932.15_47588718_47602303_1	chrX	-	365	3	ISM	ENSMUSG00000036932.15	ENSMUST00000143466.8	3364	15	0	24897	0	-14383	5prime_fragment	FALSE	canonical	3	1138	junction_2	18	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATACAATGAAAGAGTGATG	NA	False	NA	NA	False	TATAAA	-15	NA	47602303	47588717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_47588749_47593686_47593830_47602112
ENSMUSG00000036932.15_47588718_47602436_1	chrX	-	498	3	ISM	ENSMUSG00000036932.15	ENSMUST00000037349.8	2237	16	4	24897	0	-14383	5prime_fragment	FALSE	canonical	3	1138	junction_2	18	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATACAATGAAAGAGTGATG	NA	False	NA	NA	False	TATAAA	-15	NA	47602436	47588717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_47588749_47593686_47593830_47602112
ENSMUSG00000036934.10_86135388_86159443_1	chr8	-	1573	4	NNC	ENSMUSG00000036934.10	novel	1587	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	137.162515125509	2522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGGCATACCAGTGTGG	NA	False	NA	94	True	ATTAAA	-21	NA	86159443	86135387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_86136520_86138736_86138925_86153488_86153586_86159287
ENSMUSG00000036934.10_86135388_86159443_2	chr8	-	1560	4	NNC	ENSMUSG00000036934.10	novel	1587	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	135.750588294203	2442	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGGCATACCAGTGTGG	NA	False	NA	94	True	ATTAAA	-21	NA	86159443	86135387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_86136512_86138741_86138925_86153488_86153586_86159287
ENSMUSG00000036934.10_86135601_86159443_1	chr8	-	1355	4	FSM	ENSMUSG00000036934.10	ENSMUST00000047749.7	1587	4	19	213	0	-213	multi-exon	FALSE	canonical	3	253	junction_1	19.3045763140937	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTTGTGAACAGTGATT	NA	False	NA	NA	False	TATAAA	-18	NA	86159443	86135600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_86136520_86138741_86138925_86153488_86153586_86159287
ENSMUSG00000036934.10_86136447_86159443_2	chr8	-	509	4	FSM	ENSMUSG00000036934.10	ENSMUST00000047749.7	1587	4	19	1059	0	0	multi-exon	FALSE	canonical	3	253	junction_1	19.3045763140937	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGCAGAAATAAATAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	86159443	86136446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_86136520_86138741_86138925_86153488_86153586_86159287
ENSMUSG00000036940.16_136277855_136279300_1	chr4	-	608	2	FSM	ENSMUSG00000036940.16	ENSMUST00000171424.2	828	2	553	-333	553	0	multi-exon	FALSE	canonical	3	1741	junction_1	0	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTTAATTGTGTGTG	NA	False	NA	-9	True	AATAAA	-26	NA	136279300	136277854	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_136278345_136279182
ENSMUSG00000036968.16_138185747_138191905_1	chr5	+	1580	6	FSM	ENSMUSG00000036968.16	ENSMUST00000110934.9	1855	6	0	275	0	-275	multi-exon	FALSE	canonical	3	120	junction_5	26.1350339582714	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCTGAGTCCCATTTCAA	5598	False	NA	16	True	ATTAAA	-16	NA	138185746	138191905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_138185983_138188531_138188659_138188754_138188852_138190099_138190223_138190822_138190941_138191026
ENSMUSG00000036977.9_80438449_80501979_1	chr8	+	783	5	NIC	ENSMUSG00000036977.9	novel	2801	5	NA	NA	0	8	combination_of_known_splicesites	FALSE	canonical	3	195	junction_1	137.767920794356	1966	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAGTCAATCTTTAAAT	NA	False	NA	10	True	AATAAA	-28	NA	80438448	80501979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_80438474_80439781_80439909_80446286_80446378_80455758_80455880_80501560
ENSMUSG00000036977.9_80438449_80501979_2	chr8	+	831	5	FSM	ENSMUSG00000036977.9	ENSMUST00000048147.9	2801	5	0	1970	0	8	multi-exon	FALSE	canonical	3	102	junction_1	177.95698216142	2565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAGTCAATCTTTAAAT	NA	False	NA	10	True	AATAAA	-28	NA	80438448	80501979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_80438474_80439733_80439909_80446286_80446378_80455758_80455880_80501560
ENSMUSG00000036977.9_80438449_80501979_3	chr8	+	662	4	NIC	ENSMUSG00000036977.9	novel	2801	5	NA	NA	0	8	combination_of_known_splicesites	FALSE	canonical	3	15	junction_3	212.071266847308	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAGTCAATCTTTAAAT	NA	False	NA	10	True	AATAAA	-28	NA	80438448	80501979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_80438474_80439781_80439909_80446286_80446378_80501560
ENSMUSG00000036977.9_80438449_80502037_1	chr8	+	1019	5	NIC	ENSMUSG00000036977.9	novel	2801	5	NA	NA	0	66	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	204.767398528184	3240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCAAGATATATATACTAT	NA	False	NA	17	True	ATTAAA	-23	NA	80438448	80502037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_80438604_80439733_80439909_80446286_80446378_80455758_80455880_80501560
ENSMUSG00000036977.9_80438449_80502037_2	chr8	+	971	5	FSM	ENSMUSG00000036977.9	ENSMUST00000210812.2	4591	5	-31	3651	0	66	multi-exon	FALSE	canonical	3	128	junction_1	166.717388115337	2390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCAAGATATATATACTAT	NA	False	NA	17	True	ATTAAA	-23	NA	80438448	80502037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_80438604_80439781_80439909_80446286_80446378_80455758_80455880_80501560
ENSMUSG00000036977.9_80438480_80501979_1	chr8	+	930	5	NIC	ENSMUSG00000036977.9	novel	4591	5	NA	NA	0	8	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	204.767398528184	1907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAGTCAATCTTTAAAT	NA	False	NA	10	True	AATAAA	-28	NA	80438479	80501979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_80438604_80439733_80439909_80446286_80446378_80455758_80455880_80501560
ENSMUSG00000036977.9_80438480_80501979_2	chr8	+	882	5	FSM	ENSMUSG00000036977.9	ENSMUST00000210812.2	4591	5	0	3709	0	8	multi-exon	FALSE	canonical	3	128	junction_1	166.717388115337	1425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAGTCAATCTTTAAAT	NA	False	NA	10	True	AATAAA	-28	NA	80438479	80501979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_80438604_80439781_80439909_80446286_80446378_80455758_80455880_80501560
ENSMUSG00000036980.14_138176879_138185478_1	chr5	-	2380	15	NIC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	170	junction_14	144.727259325383	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	1962	False	NA	-4	True	AATAAA	-18	NA	138185478	138176878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185345
ENSMUSG00000036980.14_138176879_138185478_2	chr5	-	2502	15	NIC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_14	176.391146985028	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	1962	False	NA	-4	True	AATAAA	-18	NA	138185478	138176878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185223
ENSMUSG00000036983.8_3569531_3608030_1	chr17	-	1371	7	NNC	ENSMUSG00000036983.8	novel	1402	7	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	30.1132123088115	1099	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAAACCTAACAGCTCAAA	NA	False	NA	NA	False	AATAAA	-16	NA	3608030	3569530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_3570071_3571919_3572048_3586352_3586473_3593371_3593524_3595857_3595967_3605206_3605354_3607855
ENSMUSG00000036983.8_3569531_3608030_2	chr17	-	1224	6	NIC	ENSMUSG00000036983.8	novel	1402	7	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	33.0611554547024	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAAACCTAACAGCTCAAA	NA	False	NA	NA	False	AATAAA	-16	NA	3608030	3569530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_3570071_3571919_3572048_3586352_3586473_3595857_3595967_3605206_3605359_3607855
ENSMUSG00000036983.8_3603739_3608056_1	chr17	-	479	3	ISM	ENSMUSG00000036983.8	ENSMUST00000232131.2	485	4	-27	7837	0	-3204	5prime_fragment	FALSE	canonical	0	0	junction_1	43	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACATAGTCTCCTCTGTT	NA	False	NA	NA	False	AATAAA	-24	NA	3608056	3603738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_3603865_3605206_3605359_3607855
ENSMUSG00000037005.17_47197798_47207487_1	chrX	+	991	7	ISM	ENSMUSG00000037005.17	ENSMUST00000114998.8	3017	20	2	15415	0	6456	5prime_fragment	TRUE	canonical	3	34	junction_5	7.51480021173033	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAGATGCTTGGTTAAAA	NA	False	NA	NA	False	NA	NA	NA	47197797	47207487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_47198072_47200601_47200676_47202553_47202665_47204804_47204869_47205828_47205934_47206154_47206242_47207211
ENSMUSG00000037012.19_62104887_62175929_1	chr10	-	3633	18	FSM	ENSMUSG00000037012.19	ENSMUST00000099691.11	4278	18	392	253	392	0	multi-exon	FALSE	canonical	3	414	junction_15	35.8424078528779	733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTCGGAGTGGTGTTTC	NA	False	NA	-7	True	AGTAAA	-15	NA	62175929	62104886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
ENSMUSG00000037013.18_14759994_14815823_1	chr18	-	1543	10	FSM	ENSMUSG00000037013.18	ENSMUST00000092041.11	2911	10	62	1306	0	0	multi-exon	FALSE	canonical	3	595	junction_3	115.228382991837	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACTTTTCCACCGATTAT	NA	False	NA	-64	True	NA	NA	NA	14815823	14759993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ENSMUSG00000037022.4_79994537_79995821_1	chr8	-	368	2	ISM	ENSMUSG00000037022.4	ENSMUST00000210231.2	1685	8	25488	0	25488	0	3prime_fragment	FALSE	canonical	3	84	junction_1	0	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTAGAGTTTCCCTGA	NA	False	NA	-6	True	AATAAA	-17	NA	79995821	79994536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_79994845_79995761
ENSMUSG00000037022.4_79994537_80021566_1	chr8	-	1340	7	FSM	ENSMUSG00000037022.4	ENSMUST00000048718.4	5650	7	0	4310	0	0	multi-exon	FALSE	canonical	3	29	junction_6	17.5214154679352	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTAGAGTTTCCCTGA	NA	False	NA	-6	True	AATAAA	-17	NA	80021566	79994536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80004830_80004954_80007805_80008284_80021542
ENSMUSG00000037022.4_79994537_80021566_2	chr8	-	739	5	NIC	ENSMUSG00000037022.4	novel	5650	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_4	28.7782469931718	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTAGAGTTTCCCTGA	NA	False	NA	-6	True	AATAAA	-17	NA	80021566	79994536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80021542
ENSMUSG00000037032.17_105207691_105230436_1	chr7	-	2635	14	FSM	ENSMUSG00000037032.17	ENSMUST00000189378.7	2878	14	262	-19	-37	0	multi-exon	FALSE	canonical	3	117	junction_6	14.1718113410527	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTCTTCCTGTGCTCA	NA	False	NA	-23	True	AATAAA	-16	NA	105230436	105207690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_105208258_105208338_105208516_105208649_105208766_105214178_105214263_105214507_105214593_105214739_105214855_105215257_105215386_105215754_105215905_105216289_105216354_105216460_105216547_105216634_105216692_105216784_105216961_105222888_105223624_105230341
ENSMUSG00000037049.10_105203567_105204690_1	chr7	+	740	2	FSM	ENSMUSG00000037049.10	ENSMUST00000210934.2	2359	2	-66	1685	0	-1259	multi-exon	FALSE	canonical	3	38	junction_1	0	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCCCCGGTGCCCCTGTC	NA	False	NA	NA	False	NA	NA	NA	105203566	105204690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_105204045_105204428
ENSMUSG00000037058.17_35731694_35749481_1	chr18	+	693	4	FSM	ENSMUSG00000037058.17	ENSMUST00000041314.17	1475	4	24	758	0	39	multi-exon	FALSE	canonical	3	2803	junction_2	114.719948860983	4186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGCTGTCACACAATTACT	4664	False	NA	18	True	AATAAA	-25	NA	35731693	35749481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35731813_35743923_35744088_35746375_35746556_35749251
ENSMUSG00000037072.17_144276475_144303441_1	chr3	+	1226	5	FSM	ENSMUSG00000037072.17	ENSMUST00000082437.11	1514	5	288	0	0	0	multi-exon	FALSE	canonical	3	1325	junction_1	27.3404462289846	10196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGCTTTGTCCTTTCGTG	NA	False	NA	28	True	AATAAA	-30	NA	144276474	144303441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_144276561_144283346_144283515_144296372_144296437_144300661_144300712_144302583
ENSMUSG00000037075.8_58772823_58805587_1	chr15	+	722	9	NIC	ENSMUSG00000037075.8	novel	4348	2	NA	NA	837	26681	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCAGAGCACGCTCGTCC	NA	False	NA	NA	False	NA	NA	NA	58772822	58805587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_58772920_58776582_58776710_58777589_58777661_58792988_58793032_58793122_58793267_58795753_58795818_58798284_58798335_58800532_58800599_58805527
ENSMUSG00000037075.8_58772823_58805587_2	chr15	+	658	8	NIC	ENSMUSG00000037075.8	novel	4348	2	NA	NA	837	26681	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCAGAGCACGCTCGTCC	NA	False	NA	NA	False	NA	NA	NA	58772822	58805587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_58772920_58776582_58776710_58777589_58777661_58792988_58793032_58793122_58793267_58798284_58798335_58800532_58800599_58805527
ENSMUSG00000037075.8_58772823_58805587_3	chr15	+	939	12	NNC	ENSMUSG00000037075.8	novel	4348	2	NA	NA	837	26681	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	977	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCAGAGCACGCTCGTCC	NA	False	NA	NA	False	NA	NA	NA	58772822	58805587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58794155_58794233_58798284_58798335_58800532_58800599_58805527
ENSMUSG00000037075.8_58772823_58805587_4	chr15	+	849	11	NIC	ENSMUSG00000037075.8	novel	4348	2	NA	NA	837	26681	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	116	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCAGAGCACGCTCGTCC	NA	False	NA	NA	False	NA	NA	NA	58772822	58805587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_58772920_58776582_58776710_58777589_58777661_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58795753_58795818_58798284_58798335_58800532_58800599_58805527
ENSMUSG00000037075.8_58772823_58805587_5	chr15	+	840	11	NIC	ENSMUSG00000037075.8	novel	4348	2	NA	NA	837	26681	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	682	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCAGAGCACGCTCGTCC	NA	False	NA	NA	False	NA	NA	NA	58772822	58805587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58792988_58793032_58793122_58793267_58795753_58795818_58798284_58798335_58800532_58800599_58805527
ENSMUSG00000037075.8_58772823_58805587_6	chr15	+	862	11	NIC	ENSMUSG00000037075.8	novel	4348	2	NA	NA	837	26681	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1013	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCAGAGCACGCTCGTCC	NA	False	NA	NA	False	NA	NA	NA	58772822	58805587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58798284_58798335_58800532_58800599_58805527
ENSMUSG00000037089.12_45874874_45878774_1	chr17	+	2010	4	FSM	ENSMUSG00000037089.12	ENSMUST00000224905.2	1906	4	74	-178	0	177	multi-exon	FALSE	canonical	3	396	junction_3	17.6823829464998	1169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATAACACCCAACCCTGC	NA	False	NA	NA	False	NA	NA	NA	45874873	45878774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45877234
ENSMUSG00000037101.17_79118011_79120955_1	chr8	+	825	3	FSM	ENSMUSG00000037101.17	ENSMUST00000124713.2	673	3	400	-552	400	0	multi-exon	FALSE	canonical	2	2	junction_2	1	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGTTATTTTCATTTCA	NA	False	NA	NA	False	AATAAA	-23	NA	79118010	79120955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_79118107_79119699_79119767_79120293
ENSMUSG00000037103.9_84823701_84824611_1	chr8	-	600	3	ISM	ENSMUSG00000037103.9	ENSMUST00000210279.2	2199	13	6781	0	6780	0	3prime_fragment	FALSE	canonical	3	236	junction_1	11.5	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGGTGTCCTGTTCTGT	7637	False	NA	-3	True	ACTAAA	-17	NA	84824611	84823700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_84824138_84824365_84824482_84824564
ENSMUSG00000037108.14_137786060_137820883_1	chr5	+	2138	16	NIC	ENSMUSG00000037108.14	novel	2222	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_11	25.4046364972136	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGCTTTGTGTGTGTGT	7077	False	NA	32	True	AATAAA	-25	NA	137786059	137820883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_137786208_137793752_137793808_137794833_137795079_137796159_137796236_137797769_137797864_137798247_137798406_137799235_137799359_137808277_137808395_137809074_137809196_137809836_137809913_137810263_137810363_137815719_137815787_137816059_137816155_137817225_137817287_137817703_137817839_137820415
ENSMUSG00000037111.10_51428136_51468048_1	chr3	-	1763	8	FSM	ENSMUSG00000037111.10	ENSMUST00000037141.9	7411	8	252	5396	252	-5396	multi-exon	FALSE	canonical	3	18	junction_2	3.23879544250132	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAGTGTTTTGAGTAATT	NA	False	NA	NA	False	NA	NA	NA	51468048	51428135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_51428909_51434265_51434424_51437491_51437610_51440395_51440478_51443886_51444077_51450052_51450255_51457655_51457786_51467938
ENSMUSG00000037111.10_51428471_51468048_1	chr3	-	1428	8	FSM	ENSMUSG00000037111.10	ENSMUST00000037141.9	7411	8	252	5731	252	-5731	multi-exon	FALSE	canonical	3	18	junction_2	3.23879544250132	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCCTACTGAGAGGTACTG	NA	False	NA	NA	False	TTTAAA	-21	NA	51468048	51428470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_51428909_51434265_51434424_51437491_51437610_51440395_51440478_51443886_51444077_51450052_51450255_51457655_51457786_51467938
ENSMUSG00000037149.11_13269308_13270834_1	chr12	-	539	3	ISM	ENSMUSG00000037149.11	ENSMUST00000071103.10	4842	26	28380	2334	8546	-2334	3prime_fragment	FALSE	canonical	3	2128	junction_1	55.5	678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGAAGGCTTGTGTC	NA	False	NA	-11	True	AATAAA	-14	NA	13270834	13269307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_13269630_13270347_13270469_13270738
ENSMUSG00000037149.11_13269308_13299174_1	chr12	-	2468	26	FSM	ENSMUSG00000037149.11	ENSMUST00000071103.10	4842	26	40	2334	-10	-2334	multi-exon	FALSE	canonical	3	1685	junction_15	174.121171601847	1831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGAAGGCTTGTGTC	NA	False	NA	-11	True	AATAAA	-14	NA	13299174	13269307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
ENSMUSG00000037149.11_13293892_13299174_1	chr12	-	282	5	ISM	ENSMUSG00000037149.11	ENSMUST00000071103.10	4842	26	40	26918	-10	-6159	5prime_fragment	FALSE	canonical	3	2012	junction_4	108.204378377217	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGGAAAACAACTATTAAAAC	NA	False	NA	NA	False	AAGAAA	-1	NA	13299174	13293891	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
ENSMUSG00000037152.12_51312899_51316385_1	chr3	-	424	4	FSM	ENSMUSG00000037152.12	ENSMUST00000038108.12	1249	4	24	801	0	0	multi-exon	FALSE	canonical	3	5471	junction_1	421.328322755017	37014	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTAGACGGAGTCACTGG	NA	False	NA	-32	True	AATAAA	-18	NA	51316385	51312898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_51313041_51314756_51314834_51315565_51315670_51316284
ENSMUSG00000037152.12_51312899_51316385_2	chr3	-	419	4	FSM	ENSMUSG00000037152.12	ENSMUST00000193279.2	315	4	0	-104	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2986.95545478818	32094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTAGACGGAGTCACTGG	NA	False	NA	-32	True	AATAAA	-18	NA	51316385	51312898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_51313036_51314756_51314834_51315565_51315670_51316284
ENSMUSG00000037152.12_51313003_51316385_1	chr3	-	320	4	FSM	ENSMUSG00000037152.12	ENSMUST00000038108.12	1249	4	24	905	0	0	multi-exon	FALSE	canonical	3	5471	junction_1	421.328322755017	1169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCCTCAGTGACGGATGT	NA	False	NA	-136	True	NA	NA	NA	51316385	51313002	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_51313041_51314756_51314834_51315565_51315670_51316284
ENSMUSG00000037161.15_51295833_51303933_1	chr3	-	1193	4	NNC	ENSMUSG00000037161.15	novel	1232	4	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	93.8509456532005	884	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTAGTCTTTCTTGTT	NA	False	NA	0	True	AATAAA	-17	NA	51303933	51295832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_51296737_51298641_51298741_51299245_51299350_51303847
ENSMUSG00000037166.6_28988733_28992816_1	chr7	+	544	4	FSM	ENSMUSG00000037166.6	ENSMUST00000048187.6	950	4	-4	410	0	-410	multi-exon	FALSE	canonical	3	93	junction_2	2.05480466765633	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGTGTCCGGATTTTCC	4003	False	NA	8	True	NA	NA	NA	28988732	28992816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28988961_28990934_28991016_28991475_28991509_28992614
ENSMUSG00000037166.6_28988733_28992816_2	chr7	+	534	3	NNC	ENSMUSG00000037166.6	novel	755	4	NA	NA	0	-410	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	49	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGTGTCCGGATTTTCC	4003	False	NA	8	True	NA	NA	NA	28988732	28992816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_28988961_28990934_28991020_28992595
ENSMUSG00000037171.7_61254067_61261117_1	chr10	+	1779	3	FSM	ENSMUSG00000037171.7	ENSMUST00000049339.7	2095	3	316	0	316	0	multi-exon	FALSE	canonical	3	289	junction_2	2.5	1164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTCTCACAATGTGTT	NA	False	NA	20	True	ATTAAA	-17	NA	61254066	61261117	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_61254275_61258760_61259477_61260262
ENSMUSG00000037174.19_51172291_51184836_1	chr3	-	462	3	ISM	ENSMUSG00000037174.19	ENSMUST00000108051.8	2514	7	99	9205	0	0	5prime_fragment	FALSE	canonical	3	154	junction_2	12	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGAGTGTGCGTCACTTG	NA	False	NA	NA	False	AAAAAG	-7	NA	51184836	51172290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_51172428_51174173_51174288_51184625
ENSMUSG00000037174.19_51172291_51184935_1	chr3	-	597	3	ISM	ENSMUSG00000037174.19	ENSMUST00000108053.9	2611	7	61	9205	0	0	5prime_fragment	FALSE	canonical	3	85	junction_1	34.5	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGAGTGTGCGTCACTTG	NA	False	NA	NA	False	AAAAAG	-7	NA	51184935	51172290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_51172464_51174173_51174288_51184625
ENSMUSG00000037188.8_135269199_135275809_1	chr4	-	1037	3	ISM	ENSMUSG00000037188.8	ENSMUST00000105855.2	2789	16	25132	0	25132	0	3prime_fragment	FALSE	canonical	3	271	junction_1	2	885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGTTTTCATGCGCTTC	NA	False	NA	-2	True	AATAAA	-20	NA	135275809	135269198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_135270085_135273553_135273619_135275723
ENSMUSG00000037188.8_135269199_135279383_1	chr4	-	1371	7	ISM	ENSMUSG00000037188.8	ENSMUST00000105855.2	2789	16	21558	0	21558	0	3prime_fragment	FALSE	canonical	3	38	junction_6	81.7693232344638	978	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGTTTTCATGCGCTTC	NA	False	NA	-2	True	AATAAA	-20	NA	135279383	135269198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_135270085_135273553_135273619_135275723_135275810_135276549_135276639_135277606_135277642_135279056_135279194_135279310
ENSMUSG00000037190.13_107416774_107419064_1	chr9	-	1218	3	FSM	ENSMUSG00000037190.13	ENSMUST00000041459.9	1786	3	0	568	0	0	multi-exon	FALSE	canonical	3	104	junction_2	5	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCGGGAGGAGCAGCGC	NA	False	NA	-20	True	AATAAA	-19	NA	107419064	107416773	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_107417585_107418201_107418240_107418695
ENSMUSG00000037190.13_107416774_107419332_1	chr9	-	1131	4	FSM	ENSMUSG00000037190.13	ENSMUST00000194967.2	658	4	-6	-467	-6	0	multi-exon	FALSE	canonical	3	15	junction_2	45.536310297998	772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCGGGAGGAGCAGCGC	NA	False	NA	-20	True	AATAAA	-19	NA	107419332	107416773	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_107417585_107418201_107418269_107418695_107418850_107419233
ENSMUSG00000037197.12_11590250_11601488_1	chr2	-	1046	9	ISM	ENSMUSG00000037197.12	ENSMUST00000040314.12	1599	12	6585	2	-5819	0	3prime_fragment	FALSE	canonical	3	1239	junction_6	100.601239430735	3425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGCTCTCTGGTTGTTT	3548	False	NA	-26	True	TATAAA	-16	NA	11601488	11590249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_11590540_11590644_11590718_11591677_11591777_11592531_11592606_11593738_11593903_11595499_11595642_11598218_11598276_11600141_11600240_11601439
ENSMUSG00000037211.13_37694096_37698747_1	chr3	+	2203	2	NIC	ENSMUSG00000037211.13	novel	2481	3	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	26	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGAGTGCATCTTTTTTT	NA	False	NA	NA	False	AATATA	-19	NA	37694095	37698747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_37694255_37696703
ENSMUSG00000037214.13_26648261_26652968_1	chr8	+	992	3	FSM	ENSMUSG00000037214.13	ENSMUST00000036807.13	2295	3	92	1211	0	165	multi-exon	FALSE	canonical	3	177	junction_1	13	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAATTTTTTTGTTTGTA	NA	False	NA	25	True	AATAAA	-20	NA	26648260	26652968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_26648550_26650802_26650999_26652461
ENSMUSG00000037217.16_20664053_20726758_1	chrX	-	2349	16	NIC	ENSMUSG00000037217.16	novel	3261	13	NA	NA	60399	62697	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	16.4632925018053	290	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGCGGTGAGGCGGG	NA	False	NA	NA	False	NA	NA	NA	20726758	20664052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
ENSMUSG00000037217.16_20714817_20726758_1	chrX	-	2323	16	NIC	ENSMUSG00000037217.16	novel	3261	13	NA	NA	60399	11933	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	16.4632925018053	244	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTCTTGTTTCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	20726758	20714816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
ENSMUSG00000037221.14_137594907_137598953_1	chr5	-	1115	6	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	101.456197445006	475	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9985	False	NA	-10	True	ATTAAA	-21	NA	137598953	137594906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_137594991_137595176_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
ENSMUSG00000037221.14_137594907_137598953_2	chr5	-	1205	7	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	122.641301725352	304	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9985	False	NA	-10	True	ATTAAA	-21	NA	137598953	137594906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_137594991_137595176_137595316_137595412_137595578_137596851_137596942_137597855_137598086_137598238_137598315_137598532
ENSMUSG00000037221.14_137594907_137598953_3	chr5	-	1240	6	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	101.456197445006	685	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9985	False	NA	-10	True	ATTAAA	-21	NA	137598953	137594906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_137595054_137595114_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
ENSMUSG00000037221.14_137594907_137599062_1	chr5	-	1224	6	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	101.456197445006	508	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9876	False	NA	-10	True	ATTAAA	-21	NA	137599062	137594906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_137594991_137595176_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
ENSMUSG00000037221.14_137594907_137599322_1	chr5	-	1410	7	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-2	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	111.835320399634	328	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9616	False	NA	-10	True	ATTAAA	-21	NA	137599322	137594906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_137595005_137595066_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532_137598806_137599003
ENSMUSG00000037221.14_137594907_137599322_2	chr5	-	1286	7	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	111.835320399634	141	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9616	False	NA	-10	True	ATTAAA	-21	NA	137599322	137594906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_137594991_137595176_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532_137598806_137599003
ENSMUSG00000037221.14_137594907_137599322_3	chr5	-	1161	7	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	114.841073759445	229	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9616	False	NA	-10	True	ATTAAA	-21	NA	137599322	137594906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_137595005_137595066_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532_137598806_137599252
ENSMUSG00000037236.17_35686465_35724476_1	chr18	+	2824	17	NIC	ENSMUSG00000117694.2	novel	1515	15	NA	NA	0	3715	combination_of_known_splicesites	FALSE	canonical	3	44	junction_4	434.874982035067	334	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGTCATGTTGATTGGT	NA	False	NA	36	True	AATAAA	-12	NA	35686464	35724476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690423_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ENSMUSG00000037236.17_35695270_35724476_1	chr18	+	2665	14	FSM	ENSMUSG00000037236.17	ENSMUST00000236507.2	1846	14	6	-825	0	4	multi-exon	FALSE	canonical	3	44	junction_1	325.222090707295	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGTCATGTTGATTGGT	NA	False	NA	36	True	AATAAA	-12	NA	35695269	35724476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35695313_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ENSMUSG00000037242.9_134942752_135000125_1	chr4	-	2647	6	FSM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	0	1472	0	-1472	multi-exon	FALSE	canonical	3	1299	junction_1	75.0269284990396	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTCTGACTCATGGCAGC	NA	False	NA	-8	True	AATAAA	-17	NA	135000125	134942751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134999828
ENSMUSG00000037242.9_134943936_135000125_1	chr4	-	1463	6	FSM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	0	2656	0	-2656	multi-exon	FALSE	canonical	3	1299	junction_1	75.0269284990396	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGCTGTTTCAGAGTAGTC	NA	False	NA	-5	True	NA	NA	NA	135000125	134943935	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134999828
ENSMUSG00000037243.18_58197895_58199304_1	chr11	+	1155	2	ISM	ENSMUSG00000037243.18	ENSMUST00000049353.9	1860	12	-103	6149	0	-6135	intron_retention	FALSE	canonical	3	82	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAATGTCTGGGCATGGAG	7673	False	NA	NA	False	AAAAAG	-7	NA	58197894	58199304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_58198083_58198337
ENSMUSG00000037251.6_26471453_26484161_1	chr8	-	2792	5	FSM	ENSMUSG00000037251.6	ENSMUST00000061850.5	3613	5	0	821	0	-821	multi-exon	FALSE	canonical	3	50	junction_4	28.3681159050086	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTGGTGCTGGCATCC	NA	False	NA	NA	False	AATAAA	-15	NA	26484161	26471452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_26473673_26476273_26476561_26477522_26477669_26479677_26479770_26484114
ENSMUSG00000037251.6_26472385_26484161_1	chr8	-	1860	5	FSM	ENSMUSG00000037251.6	ENSMUST00000061850.5	3613	5	0	1753	0	-1753	multi-exon	FALSE	canonical	3	50	junction_4	28.3681159050086	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTGTGCCCCTTTCTTGT	NA	False	NA	NA	False	AAGAAA	-14	NA	26484161	26472384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_26473673_26476273_26476561_26477522_26477669_26479677_26479770_26484114
ENSMUSG00000037257.9_63509942_63540491_1	chr9	+	732	6	NNC	ENSMUSG00000037257.9	novel	5294	10	NA	NA	0	-7119	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	153.651033188846	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGCGCCTCTGACTTCC	9214	False	NA	NA	False	AATAAA	-32	NA	63509941	63540491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63540333
ENSMUSG00000037257.9_63509942_63544187_1	chr9	+	1179	7	ISM	ENSMUSG00000037257.9	ENSMUST00000041551.9	5294	10	0	7683	0	-3423	5prime_fragment	FALSE	canonical	3	211	junction_6	65.4032364132948	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTATTGATTCTTTGTG	9214	False	NA	NA	False	TTTAAA	-6	NA	63509941	63544187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665
ENSMUSG00000037257.9_63509942_63547789_1	chr9	+	1213	10	FSM	ENSMUSG00000037257.9	ENSMUST00000041551.9	5294	10	0	4081	0	179	multi-exon	FALSE	canonical	3	211	junction_6	53.7134601610168	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTACAGTCTTCGTTTTA	9214	False	NA	NA	False	NA	NA	NA	63509941	63547789	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665_63543766_63546321_63546427_63546874_63546925_63547488
ENSMUSG00000037257.9_63509942_63549176_1	chr9	+	2600	10	FSM	ENSMUSG00000037257.9	ENSMUST00000041551.9	5294	10	0	2694	0	1566	multi-exon	FALSE	canonical	3	211	junction_6	53.7134601610168	674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTAATGTGTTTTGTT	9214	False	NA	NA	False	ATTAAA	-19	NA	63509941	63549176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665_63543766_63546321_63546427_63546874_63546925_63547488
ENSMUSG00000037262.8_10085404_10097512_1	chr2	+	1398	5	FSM	ENSMUSG00000037262.8	ENSMUST00000042512.8	1472	5	-31	105	0	-105	multi-exon	FALSE	canonical	3	38	junction_2	5.40832691319598	553	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTTATTTTATCTTTG	4794	False	NA	NA	False	AATAAA	-24	NA	10085403	10097512	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_10085556_10090540_10090636_10094923_10094968_10095051_10095175_10096528
ENSMUSG00000037266.19_134650937_134654683_1	chr4	+	2718	4	FSM	ENSMUSG00000037266.19	ENSMUST00000148900.8	3051	4	34	299	0	0	multi-exon	FALSE	canonical	3	813	junction_2	40.8493165997507	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134650936	134654683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_134651079_134651185_134651794_134652603_134654130_134654241
ENSMUSG00000037266.19_134652635_134654683_1	chr4	+	1937	2	ISM	ENSMUSG00000037266.19	ENSMUST00000148900.8	3051	4	1732	299	-122	0	3prime_fragment	FALSE	canonical	3	913	junction_1	0	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134652634	134654683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_134654130_134654241
ENSMUSG00000037266.19_134652635_134654683_2	chr4	+	635	3	ISM	ENSMUSG00000037266.19	ENSMUST00000078084.7	1749	5	1732	299	-122	0	3prime_fragment	FALSE	canonical	3	162	junction_1	375.5	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134652634	134654683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_134652744_134654045_134654130_134654241
ENSMUSG00000037266.19_134652635_134654683_3	chr4	+	680	4	ISM	ENSMUSG00000037266.19	ENSMUST00000154837.8	734	5	864	0	-122	0	3prime_fragment	FALSE	canonical	3	31	junction_2	392.429469954652	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134652634	134654683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_134652744_134653087_134653133_134654045_134654130_134654241
ENSMUSG00000037266.19_134653197_134654683_1	chr4	+	1375	2	ISM	ENSMUSG00000037266.19	ENSMUST00000154837.8	734	5	1426	0	440	0	3prime_fragment	FALSE	canonical	3	913	junction_1	0	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134653196	134654683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_134654130_134654241
ENSMUSG00000037266.19_134653826_134654683_1	chr4	+	746	2	ISM	ENSMUSG00000037266.19	ENSMUST00000149003.2	812	3	1069	-419	1069	0	3prime_fragment	FALSE	canonical	3	913	junction_1	0	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134653825	134654683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_134654130_134654241
ENSMUSG00000037280.13_100613902_100618406_1	chr15	-	834	3	ISM	ENSMUSG00000037280.13	ENSMUST00000161514.2	2746	12	-48	23157	-48	-23157	5prime_fragment	FALSE	canonical	3	79	junction_2	12	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAGGCTATAAGAAAC	1626	False	NA	NA	False	AAGAAA	-30	NA	100618406	100613901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_100614396_100617895_100618117_100618287
ENSMUSG00000037295.8_134472734_134495335_1	chr4	-	2680	9	FSM	ENSMUSG00000037295.8	ENSMUST00000037828.8	6549	9	0	3869	0	1153	multi-exon	TRUE	canonical	3	50	junction_1	8.8175960442742	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGAGCATCACTTGGAGT	NA	False	NA	-12	True	AATAAA	-15	NA	134495335	134472733	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_134474511_134475592_134475628_134476647_134476779_134477269_134477354_134477692_134477766_134482503_134482619_134484651_134484765_134486229_134486373_134495126
ENSMUSG00000037296.8_26275316_26292565_1	chr8	+	1092	4	NNC	ENSMUSG00000037296.8	novel	2663	4	NA	NA	0	413	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	193.046338708842	1787	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTTTCTGGTGGAGAGT	8440	False	NA	24	True	AATAAA	-27	NA	26275315	26292565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_26275613_26282184_26282254_26283704_26283821_26291955
ENSMUSG00000037300.20_125398071_125402039_1	chr8	-	1184	5	ISM	ENSMUSG00000037300.20	ENSMUST00000117624.9	2970	20	46664	0	202	0	3prime_fragment	FALSE	canonical	3	335	junction_2	18.1159460144923	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGGTCAGTTTGGTCGTT	NA	False	NA	-8	True	ATTAAA	-16	NA	125402039	125398070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960
ENSMUSG00000037313.17_33815930_33829545_1	chr5	+	2129	15	NIC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_13	250.045261208968	762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGGTCCTGTTGTTTA	NA	False	NA	35	True	ACTAAA	-23	NA	33815929	33829545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829069_33829130_33829325
ENSMUSG00000037313.17_33815930_33829545_2	chr5	+	2069	15	NIC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	239.805927059907	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGGTCCTGTTGTTTA	NA	False	NA	35	True	ACTAAA	-23	NA	33815929	33829545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_33816072_33818686_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
ENSMUSG00000037315.16_20377407_20386178_1	chrX	+	3395	3	ISM	ENSMUSG00000037315.16	ENSMUST00000043693.7	2472	10	50641	-2043	50641	0	3prime_fragment	FALSE	canonical	3	148	junction_2	8	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTCAGTGTGATGATT	NA	False	NA	9	True	ATTAAA	-17	NA	20377406	20386178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_20377730_20378974_20379093_20383224
ENSMUSG00000037337.12_28690419_28702704_1	chr7	+	1588	19	ISM	ENSMUSG00000037337.12	ENSMUST00000085835.8	2724	32	8166	-1	8133	0	3prime_fragment	FALSE	canonical	3	103	junction_4	25.3179778023443	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCGGAGGAGAGATTTTT	NA	False	NA	23	True	AATAAA	-28	NA	28690418	28702704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_28690472_28690572_28690617_28690705_28690751_28692614_28692658_28693392_28693556_28693629_28693713_28694889_28694914_28695513_28695599_28697876_28697954_28698037_28698099_28699197_28699307_28699388_28699448_28699615_28699720_28700359_28700535_28701031_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
ENSMUSG00000037337.12_28700779_28702704_1	chr7	+	716	5	FSM	ENSMUSG00000037337.12	ENSMUST00000208784.2	523	5	-188	-5	-188	0	multi-exon	FALSE	canonical	3	158	junction_2	9.82344135219425	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCGGAGGAGAGATTTTT	6774	False	NA	23	True	AATAAA	-28	NA	28700778	28702704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
ENSMUSG00000037349.10_6970386_6973485_1	chr19	-	1074	6	NNC	ENSMUSG00000037349.10	novel	1073	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	59.5032772206708	962	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTTAGCTTCTGCTGCT	6965	False	NA	-3	True	AATAAA	-17	NA	6973485	6970385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6970571_6970800_6970889_6971029_6971128_6972038_6972138_6972609_6973104_6973375
ENSMUSG00000037353.10_100366988_100377045_1	chr15	+	2311	9	FSM	ENSMUSG00000037353.10	ENSMUST00000229648.2	1222	9	0	-1089	0	0	multi-exon	FALSE	canonical	3	74	junction_1	16.3587705833904	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGGGAATTACTTATG	2419	False	NA	27	True	AGTAAA	-16	NA	100366987	100377045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_100367020_100367565_100367718_100369540_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
ENSMUSG00000037361.9_4867561_4877098_1	chr12	+	602	4	FSM	ENSMUSG00000037361.9	ENSMUST00000046207.9	1180	4	17	561	0	0	multi-exon	FALSE	canonical	3	1039	junction_3	63.8609600790829	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAATGACAGCCACGCGT	NA	False	NA	NA	False	NA	NA	NA	4867560	4877098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_4867820_4870593_4870713_4876757_4876897_4877013
ENSMUSG00000037361.9_4867561_4877266_1	chr12	+	751	4	NNC	ENSMUSG00000037361.9	novel	1180	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	529.266368560188	14029	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTGTTAAACTTCTCAC	NA	False	NA	35	True	AATAAA	-25	NA	4867560	4877266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_4867820_4870612_4870713_4876757_4876897_4877013
ENSMUSG00000037361.9_4867561_4877266_2	chr12	+	887	3	ISM	ENSMUSG00000037361.9	ENSMUST00000046207.9	1180	4	17	393	0	0	intron_retention	FALSE	canonical	3	1147	junction_1	22	10378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTGTTAAACTTCTCAC	NA	False	NA	35	True	AATAAA	-25	NA	4867560	4877266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_4867820_4870593_4870713_4876757
ENSMUSG00000037361.9_4867561_4877266_3	chr12	+	775	4	NNC	ENSMUSG00000037361.9	novel	1180	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	517.128180972141	17699	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTGTTAAACTTCTCAC	NA	False	NA	35	True	AATAAA	-25	NA	4867560	4877266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_4867820_4870593_4870713_4876752_4876897_4877013
ENSMUSG00000037361.9_4867561_4877266_4	chr12	+	757	4	NNC	ENSMUSG00000037361.9	novel	1180	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	517.128180972141	15146	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTGTTAAACTTCTCAC	NA	False	NA	35	True	AATAAA	-25	NA	4867560	4877266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_4867820_4870593_4870700_4876757_4876897_4877013
ENSMUSG00000037373.13_33405067_33416667_1	chr5	-	1739	6	ISM	ENSMUSG00000037373.13	ENSMUST00000202868.4	2436	10	15669	-31	-9770	0	3prime_fragment	FALSE	canonical	3	226	junction_1	253.484042890277	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGGCACCAGTTTTAAT	NA	False	NA	-14	True	AATAAA	-21	NA	33416667	33405066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_33406028_33406450_33406569_33406930_33407059_33407714_33407846_33408201_33408417_33416481
ENSMUSG00000037376.15_132652337_132657975_1	chr2	-	577	4	NNC	ENSMUSG00000037376.15	novel	2948	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	173.007385841055	257	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTCACATTACTTGAAA	NA	False	NA	NA	False	ATTAAA	-15	NA	132657975	132652336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_132652429_132652908_132653019_132653967_132654091_132657723
ENSMUSG00000037376.15_132652337_132657975_2	chr2	-	582	4	ISM	ENSMUSG00000037376.15	ENSMUST00000147336.8	2948	11	0	6210	0	0	5prime_fragment	FALSE	canonical	3	367	junction_2	42.9055810925442	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTCACATTACTTGAAA	NA	False	NA	NA	False	ATTAAA	-15	NA	132657975	132652336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_132652429_132652908_132653019_132653967_132654096_132657723
ENSMUSG00000037386.17_39479751_39545849_1	chr15	+	1561	6	ISM	ENSMUSG00000037386.17	ENSMUST00000227381.2	4581	24	179358	0	29648	0	3prime_fragment	FALSE	canonical	3	30	junction_1	8.62554346113913	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	57	True	TTTAAA	-26	NA	39479750	39545849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_39479907_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
ENSMUSG00000037386.17_39510908_39545849_1	chr15	+	1462	6	NNC	ENSMUSG00000037386.17	novel	4800	27	NA	NA	-12054	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	16.4608626748418	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	57	True	TTTAAA	-26	NA	39510907	39545849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_39510965_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
ENSMUSG00000037386.17_39522962_39545849_1	chr15	+	1766	6	FSM	ENSMUSG00000037386.17	ENSMUST00000226410.2	3685	6	0	1919	0	0	multi-exon	FALSE	canonical	3	7	junction_1	17.2348484182484	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	57	True	TTTAAA	-26	NA	39522961	39545849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_39523323_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
ENSMUSG00000037405.9_20927281_20930875_1	chr9	+	778	2	FSM	ENSMUSG00000037405.9	ENSMUST00000215003.2	2203	2	0	1425	0	-1425	multi-exon	FALSE	canonical	3	431	junction_1	0	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATTTTTTATTTTATGTG	NA	False	NA	NA	False	AAAAAG	-1	NA	20927280	20930875	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_20927398_20930214
ENSMUSG00000037405.9_20927281_20937433_1	chr9	+	972	3	ISM	ENSMUSG00000037405.9	ENSMUST00000086399.6	2535	7	0	2680	0	-2680	5prime_fragment	FALSE	canonical	3	431	junction_1	1	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGGTGTGTGGGGTGGAC	NA	False	NA	NA	False	AATAAA	-21	NA	20927280	20937433	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_20927398_20930214_20930476_20936839
ENSMUSG00000037432.16_36458952_36484338_1	chr1	+	1157	9	NNC	ENSMUSG00000037432.16	novel	1723	12	NA	NA	2983	23147	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	401	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAAGCCCGCCCCGTGGCC	NA	False	NA	NA	False	NA	NA	NA	36458951	36484338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_36459117_36459538_36459606_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
ENSMUSG00000037432.16_36458952_36484338_2	chr1	+	1090	8	NIC	ENSMUSG00000037432.16	novel	1723	12	NA	NA	2983	23147	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	402	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAAGCCCGCCCCGTGGCC	NA	False	NA	NA	False	NA	NA	NA	36458951	36484338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_36459117_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
ENSMUSG00000037455.17_23672884_23703866_1	chr10	+	2837	14	FSM	ENSMUSG00000037455.17	ENSMUST00000119597.8	2837	14	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_6	14.8148334428987	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATTGTATTCATTCAAA	NA	False	NA	24	True	AATAAA	-17	NA	23672883	23703866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_23673082_23674643_23674784_23679655_23679752_23680085_23680160_23681790_23681939_23686686_23686844_23692190_23692328_23694957_23695060_23696711_23696804_23698820_23698917_23700583_23700659_23701844_23701939_23702040_23702094_23702491
ENSMUSG00000037466.14_113120041_113122418_1	chr12	+	1033	6	NNC	ENSMUSG00000037466.14	novel	4000	9	NA	NA	0	1209	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	95.4303934813223	297	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCATGCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	113120040	113122418	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_113120192_113120294_113120374_113120780_113120984_113121090_113121348_113121688_113121788_113122174
ENSMUSG00000037466.14_113120041_113122418_2	chr12	+	926	6	NNC	ENSMUSG00000037466.14	novel	2441	8	NA	NA	0	1209	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_5	67.517108942845	295	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCATGCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	113120040	113122418	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_113120192_113120294_113120374_113120780_113120984_113121197_113121348_113121688_113121788_113122174
ENSMUSG00000037474.14_191270960_191307625_1	chr1	-	2698	15	FSM	ENSMUSG00000037474.14	ENSMUST00000027933.11	4212	15	31	1483	0	257	multi-exon	FALSE	canonical	3	463	junction_7	26.7651349516417	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTGTGTGTGTGTG	NA	False	NA	0	True	AATATA	-17	NA	191307625	191270959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_191271454_191272815_191273649_191278602_191278736_191280407_191280498_191285099_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
ENSMUSG00000037475.16_40916060_41000778_1	chrX	-	2787	23	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	0	32192	0	-3775	5prime_fragment	FALSE	canonical	3	149	junction_4	23.7647300993345	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTTTGATGTAGCGAT	NA	False	NA	NA	False	AATAAA	-43	NA	41000778	40916059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
ENSMUSG00000037475.16_40985814_41000763_1	chrX	-	1000	2	ISM	ENSMUSG00000037475.16	ENSMUST00000129915.8	869	9	0	36812	0	-17051	5prime_fragment	FALSE	canonical	3	228	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	41000763	40985813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_40986728_41000677
ENSMUSG00000037487.8_37968138_37981799_1	chr15	-	1801	11	ISM	ENSMUSG00000037487.8	ENSMUST00000228029.2	2279	12	2812	35	-1734	0	3prime_fragment	FALSE	canonical	3	765	junction_8	75.2787486612258	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAATTAAGTATGTTC	3212	False	NA	-40	True	NA	NA	NA	37981799	37968137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_37968750_37970505_37970592_37971991_37972137_37973146_37973261_37973546_37973703_37975830_37975916_37976303_37976480_37978265_37978327_37980033_37980165_37981063_37981209_37981709
ENSMUSG00000037499.10_191038986_191050195_1	chr1	-	546	4	FSM	ENSMUSG00000037499.10	ENSMUST00000046770.10	742	4	196	0	196	0	multi-exon	FALSE	canonical	3	115	junction_1	10.5303793326209	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTGTGTATGGTTCTTG	NA	False	NA	0	True	AATAAA	-19	NA	191050195	191038985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_191039287_191042115_191042220_191043656_191043718_191050115
ENSMUSG00000037514.19_131124667_131138612_1	chr2	+	692	4	ISM	ENSMUSG00000037514.19	ENSMUST00000138509.8	1791	9	19908	-1	8562	1	3prime_fragment	FALSE	canonical	3	415	junction_2	62.3110477095889	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTGGAGGTCATCTTTC	NA	False	NA	14	True	NA	NA	NA	131124666	131138612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_131124689_131129393_131129518_131135318_131135445_131138192
ENSMUSG00000037531.9_32781724_32790905_1	chr3	-	790	7	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	391	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	273.644335264266	1039	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCATTGTTCTTAAAGCC	NA	False	NA	-89	True	NA	NA	NA	32790905	32781723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_32781867_32782580_32782677_32784234_32784361_32785308_32785406_32787737_32787799_32788256_32788409_32790790
ENSMUSG00000037531.9_32781724_32790905_2	chr3	-	789	7	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	391	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	278.548270303172	1141	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCATTGTTCTTAAAGCC	NA	False	NA	-89	True	NA	NA	NA	32790905	32781723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_32781861_32782580_32782677_32784229_32784361_32785308_32785406_32787737_32787799_32788256_32788409_32790790
ENSMUSG00000037531.9_32791225_32805251_1	chr3	-	529	6	NIC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	-13497	-975	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	330	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGCCACGGAAGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	32805251	32791224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805177
ENSMUSG00000037531.9_32791225_32805380_1	chr3	-	642	6	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	-13626	-975	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3128	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGCCACGGAAGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	32805380	32791224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_32791355_32799002_32799092_32800596_32800648_32801876_32801939_32802609_32802717_32805177
ENSMUSG00000037531.9_32791225_32805380_10	chr3	-	640	5	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	-13626	-975	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	752	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGCCACGGAAGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	32805380	32791224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_32791355_32799002_32799092_32800596_32800708_32802609_32802717_32805177
ENSMUSG00000037531.9_32791225_32805380_2	chr3	-	651	6	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	-13626	-975	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7163	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGCCACGGAAGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	32805380	32791224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805184
ENSMUSG00000037531.9_32791225_32805380_3	chr3	-	652	6	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	-13626	-975	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6643	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGCCACGGAAGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	32805380	32791224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802711_32805177
ENSMUSG00000037531.9_32791225_32805380_4	chr3	-	647	6	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	-13626	-975	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3691	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGCCACGGAAGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	32805380	32791224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_32791355_32799002_32799092_32800596_32800664_32801887_32801939_32802609_32802717_32805177
ENSMUSG00000037531.9_32791225_32805380_5	chr3	-	652	6	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	-13626	-975	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	16095	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGCCACGGAAGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	32805380	32791224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_32791355_32799002_32799092_32800596_32800664_32801882_32801939_32802609_32802717_32805177
ENSMUSG00000037531.9_32791225_32805380_6	chr3	-	659	6	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	-13626	-975	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	15615	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGCCACGGAAGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	32805380	32791224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802725_32805184
ENSMUSG00000037531.9_32791225_32805380_7	chr3	-	648	6	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	-13626	-975	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4753	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGCCACGGAAGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	32805380	32791224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805187
ENSMUSG00000037531.9_32791225_32805380_8	chr3	-	648	6	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	-13626	-975	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6607	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGCCACGGAAGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	32805380	32791224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_32791355_32799002_32799092_32800596_32800664_32801876_32801929_32802609_32802717_32805177
ENSMUSG00000037531.9_32791225_32805380_9	chr3	-	653	6	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	-13626	-975	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3791	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGCCACGGAAGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	32805380	32791224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802725_32805190
ENSMUSG00000037531.9_32791225_32805715_1	chr3	-	987	6	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	-13961	-975	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	19184	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGCCACGGAAGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	32805715	32791224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_32791355_32799002_32799092_32800596_32800664_32801882_32801939_32802609_32802717_32805177
ENSMUSG00000037544.15_47625236_47655673_1	chr14	-	2773	19	FSM	ENSMUSG00000037544.15	ENSMUST00000043296.10	2964	19	191	0	-9	0	multi-exon	FALSE	canonical	3	355	junction_12	54.7968470301389	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTCTTCGCATTGTTA	NA	False	NA	NA	False	NA	NA	NA	47655673	47625235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
ENSMUSG00000037563.16_28050077_28052121_1	chr7	+	636	4	NNC	ENSMUSG00000037563.16	novel	1109	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	10005.3047374325	31387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050076	28052121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_28050277_28050416_28050519_28051601_28051699_28051884
ENSMUSG00000037563.16_28050188_28052121_1	chr7	+	622	4	ISM	ENSMUSG00000037563.16	ENSMUST00000082134.6	1109	5	111	459	0	0	intron_retention	FALSE	canonical	3	19383	junction_3	906.691543776358	36181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050187	28052121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_28050277_28050416_28050519_28051601_28051699_28051787
ENSMUSG00000037563.16_28050188_28052121_2	chr7	+	519	4	NNC	ENSMUSG00000037563.16	novel	628	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	10005.3047374325	7212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050187	28052121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_28050277_28050416_28050519_28051601_28051727_28051918
ENSMUSG00000037563.16_28050188_28052121_3	chr7	+	538	5	NNC	ENSMUSG00000037563.16	novel	1109	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	8741.0029458867	163712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050187	28052121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_28050277_28050416_28050527_28051610_28051699_28051787_28051836_28051918
ENSMUSG00000037563.16_28050188_28052121_4	chr7	+	531	5	NNC	ENSMUSG00000037563.16	novel	628	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10445.2038754636	123020	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050187	28052121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_28050277_28050423_28050519_28051601_28051699_28051788_28051836_28051918
ENSMUSG00000037563.16_28050188_28052121_5	chr7	+	610	5	NNC	ENSMUSG00000037563.16	novel	1109	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	8741.0029458867	122258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050187	28052121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_28050277_28050416_28050590_28051601_28051699_28051787_28051836_28051918
ENSMUSG00000037563.16_28050188_28052121_6	chr7	+	528	5	NNC	ENSMUSG00000037563.16	novel	628	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	9050.48674105432	45008	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050187	28052121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_28050277_28050416_28050519_28051601_28051699_28051798_28051836_28051918
ENSMUSG00000037563.16_28050188_28052121_7	chr7	+	491	4	NIC	ENSMUSG00000037563.16	novel	628	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_3	10001.0636878728	2582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050187	28052121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_28050277_28050416_28050519_28051601_28051699_28051918
ENSMUSG00000037563.16_28050188_28052121_8	chr7	+	525	5	NNC	ENSMUSG00000037563.16	novel	1109	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9895.80305925194	43874	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050187	28052121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_28050277_28050423_28050512_28051601_28051699_28051787_28051836_28051918
ENSMUSG00000037563.16_28050188_28052121_9	chr7	+	532	5	NNC	ENSMUSG00000037563.16	novel	1109	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8855.79201356378	199048	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050187	28052121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_28050277_28050423_28050519_28051601_28051699_28051787_28051836_28051918
ENSMUSG00000037570.17_99140698_99149801_3	chr15	-	2015	15	NIC	ENSMUSG00000037570.17	novel	1916	15	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_14	227.949611779016	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTTTTATTTTTTTTTA	NA	False	NA	1	True	AATAAA	-21	NA	99149801	99140697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149602
ENSMUSG00000037570.17_99140698_99149801_4	chr15	-	1842	15	NNC	ENSMUSG00000037570.17	novel	1916	15	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	228.257205890233	233	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTTTTATTTTTTTTTA	NA	False	NA	1	True	AATAAA	-21	NA	99149801	99140697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146364_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149742
ENSMUSG00000037572.18_47478401_47493597_1	chr14	-	2020	11	ISM	ENSMUSG00000037572.18	ENSMUST00000187531.8	4260	25	20692	0	121	0	3prime_fragment	FALSE	canonical	3	301	junction_9	38.057982079979	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTCTTGCTATGGTTT	NA	False	NA	0	True	AATAAA	-20	NA	47493597	47478400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_47479270_47481259_47481399_47482441_47482570_47482743_47482915_47483289_47483334_47484837_47484892_47485242_47485356_47485452_47485671_47488216_47488349_47489374_47489490_47493560
ENSMUSG00000037600.17_133246274_133258099_1	chr4	+	1937	4	NIC	ENSMUSG00000037600.17	novel	1708	4	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	23.3666428910958	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACCTGCCTGGTCATCAG	5471	False	NA	7	True	NA	NA	NA	133246273	133258099	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_133246364_133255050_133256321_133257141_133257217_133257597
ENSMUSG00000037601.12_93849751_93859098_1	chr11	-	986	5	FSM	ENSMUSG00000037601.12	ENSMUST00000135884.8	3181	5	249	1946	0	547	multi-exon	FALSE	canonical	3	3315	junction_4	669.623401622136	41211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTGGCCCAGGCCTGT	634	False	NA	-4	True	AATAAA	-14	NA	93859098	93849750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_93850340_93851493_93851607_93854052_93854155_93856633_93856764_93859046
ENSMUSG00000037601.12_93849969_93859150_1	chr11	-	820	5	FSM	ENSMUSG00000037601.12	ENSMUST00000135884.8	3181	5	197	2164	-52	329	multi-exon	FALSE	canonical	3	3315	junction_4	669.623401622136	39406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATATTGGCCTCATGTGC	582	False	NA	-24	True	NA	NA	NA	93859150	93849968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_93850340_93851493_93851607_93854052_93854155_93856633_93856764_93859046
ENSMUSG00000037601.12_93850058_93859098_1	chr11	-	679	5	FSM	ENSMUSG00000037601.12	ENSMUST00000135884.8	3181	5	249	2253	0	240	multi-exon	FALSE	canonical	3	3315	junction_4	669.623401622136	37238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTATTGCTGTACAGCT	634	False	NA	-16	True	ATTAAA	-15	NA	93859098	93850057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_93850340_93851493_93851607_93854052_93854155_93856633_93856764_93859046
ENSMUSG00000037601.12_93850058_93859098_2	chr11	-	672	5	NNC	ENSMUSG00000037601.12	novel	3181	5	NA	NA	0	240	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1907.64658676601	14300	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTATTGCTGTACAGCT	634	False	NA	-16	True	ATTAAA	-15	NA	93859098	93850057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_93850340_93851493_93851607_93854052_93854148_93856633_93856764_93859046
ENSMUSG00000037608.17_20188215_20199108_1	chr10	+	754	4	ISM	ENSMUSG00000037608.17	ENSMUST00000186100.7	3231	13	-3	16904	0	767	5prime_fragment	FALSE	canonical	3	760	junction_3	128.608795275526	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGAGGGGGAACCCCAAGA	2790	False	NA	NA	False	AAAACA	-11	NA	20188214	20199108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708
ENSMUSG00000037608.17_20188215_20216010_1	chr10	+	3070	12	FSM	ENSMUSG00000037608.17	ENSMUST00000092678.10	5307	12	0	2237	0	1	multi-exon	FALSE	canonical	3	294	junction_10	195.138687701892	687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATATTTGTAACTATCAAC	2790	False	NA	10	True	AATAAA	-18	NA	20188214	20216010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20215454_20215668_20215797
ENSMUSG00000037608.17_20210265_20216010_1	chr10	+	553	3	ISM	ENSMUSG00000037608.17	ENSMUST00000188546.2	834	4	1265	-58	1265	1	3prime_fragment	FALSE	canonical	3	695	junction_1	165	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATATTTGTAACTATCAAC	1824	False	NA	10	True	AATAAA	-18	NA	20210264	20216010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_20210392_20215454_20215668_20215797
ENSMUSG00000037608.17_20215517_20216010_2	chr10	+	364	2	ISM	ENSMUSG00000037608.17	ENSMUST00000188546.2	834	4	6517	-58	6517	1	3prime_fragment	FALSE	canonical	3	1025	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATATTTGTAACTATCAAC	7076	False	NA	10	True	AATAAA	-18	NA	20215516	20216010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_20215668_20215797
ENSMUSG00000037608.17_20215517_20218247_1	chr10	+	2601	2	ISM	ENSMUSG00000037608.17	ENSMUST00000188546.2	834	4	6517	-2295	6517	0	3prime_fragment	FALSE	canonical	3	1025	junction_1	0	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCTGGTCTCTGTTTGCCT	7076	False	NA	16	True	AATAAA	-17	NA	20215516	20218247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_20215668_20215797
ENSMUSG00000037622.15_133040182_133080214_1	chr4	-	944	5	ISM	ENSMUSG00000037622.15	ENSMUST00000135929.8	628	6	-25	4079	-25	306	5prime_fragment	FALSE	canonical	3	471	junction_4	22.4318412084251	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTATTTGTTTGTTTTAT	8965	False	NA	NA	False	AATGAA	-20	NA	133080214	133040181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_133040730_133041070_133041118_133049482_133049567_133051138_133051286_133080096
ENSMUSG00000037622.15_133072982_133080792_1	chr4	-	688	3	NNC	ENSMUSG00000037622.15	novel	628	6	NA	NA	0	-31872	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	28	145	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGTTCCTTTATGGTCT	8387	False	NA	NA	False	NA	NA	NA	133080792	133072981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_133073314_133080096_133080261_133080600
ENSMUSG00000037628.11_46998043_47008978_1	chr14	+	746	8	NNC	ENSMUSG00000037628.11	novel	917	8	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	73.7455636853181	996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTTCTCCAGCATAGT	NA	False	NA	3	True	AATAAA	-18	NA	46998042	47008978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_46998106_46999984_47000087_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007289_47007394_47008857
ENSMUSG00000037628.11_46998043_47008978_2	chr14	+	678	8	NNC	ENSMUSG00000037628.11	novel	917	8	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_4	74.8789499315872	187	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTTCTCCAGCATAGT	NA	False	NA	3	True	AATAAA	-18	NA	46998042	47008978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_46998106_46999984_47000068_47001980_47002037_47002452_47002498_47004681_47004856_47006322_47006355_47007289_47007394_47008857
ENSMUSG00000037628.11_46998043_47008978_4	chr14	+	724	8	FSM	ENSMUSG00000037628.11	ENSMUST00000067426.6	917	8	45	148	0	1	multi-exon	FALSE	canonical	3	28	junction_6	72.4563204099335	1038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTTCTCCAGCATAGT	NA	False	NA	3	True	AATAAA	-18	NA	46998042	47008978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_46998106_46999984_47000068_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007292_47007394_47008857
ENSMUSG00000037628.11_46998043_47008978_5	chr14	+	682	7	NIC	ENSMUSG00000037628.11	novel	917	8	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	2	4	junction_3	77.3599092266502	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTTCTCCAGCATAGT	NA	False	NA	3	True	AATAAA	-18	NA	46998042	47008978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_46998106_46999984_47000068_47001980_47002037_47004632_47004856_47006322_47006355_47007289_47007394_47008857
ENSMUSG00000037640.16_27430814_27447861_1	chr7	+	630	5	FSM	ENSMUSG00000037640.16	ENSMUST00000108336.8	5896	5	0	5266	0	-110	multi-exon	FALSE	canonical	3	74	junction_1	38.9422649572415	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTGGGAAGTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	27430813	27447861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27430896_27436360_27436414_27437727_27437855_27440381_27440481_27447592
ENSMUSG00000037652.16_31015250_31023554_1	chr3	-	978	3	ISM	ENSMUSG00000037652.16	ENSMUST00000099163.5	2808	9	10	31980	0	-2714	5prime_fragment	FALSE	canonical	3	8	junction_2	1	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTTAAATTAATATT	NA	False	NA	NA	False	NA	NA	NA	31023554	31015249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_31016033_31019921_31020085_31023522
ENSMUSG00000037669.16_8258145_8326223_1	chr12	+	1184	6	NIC	ENSMUSG00000037669.16	novel	1159	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	188	junction_5	22.8700677742765	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTGCGACCTGCTGA	NA	False	NA	NA	False	ATTAAA	-19	NA	8258144	8326223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_8258205_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807
ENSMUSG00000037669.16_8258145_8334281_1	chr12	+	1221	7	FSM	ENSMUSG00000037669.16	ENSMUST00000037383.13	2737	7	38	1478	0	202	multi-exon	FALSE	canonical	3	35	junction_1	76.8839312788367	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTACTGGCCCAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	8258144	8334281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_8258193_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8333899
ENSMUSG00000037669.16_8258145_8334281_2	chr12	+	1233	7	NIC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	0	202	combination_of_known_junctions	FALSE	canonical	3	188	junction_5	23.7533623350932	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTACTGGCCCAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	8258144	8334281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_8258205_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8333899
ENSMUSG00000037669.16_8258145_8335759_1	chr12	+	2711	7	NIC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	188	junction_5	23.7533623350932	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTGTGGTCTGATC	NA	False	NA	18	True	AATAAA	-18	NA	8258144	8335759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_8258205_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8333899
ENSMUSG00000037706.18_142587326_142607154_1	chr7	+	982	4	NIC	ENSMUSG00000037706.18	novel	425	5	NA	NA	-19150	-12196	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGCGAGCAGTGAGGGGGG	9261	False	NA	NA	False	NA	NA	NA	142587325	142607154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_142587664_142591017_142591119_142598231_142598394_142606773
ENSMUSG00000037710.9_71166310_71180679_1	chr10	-	979	3	FSM	ENSMUSG00000037710.9	ENSMUST00000045887.9	1084	3	105	0	105	0	multi-exon	FALSE	canonical	3	1606	junction_1	82	16922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTGGCTCTGTAACGG	1358	False	NA	7	True	AATAAA	-27	NA	71180679	71166309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_71166957_71172043_71172250_71180553
ENSMUSG00000037710.9_71166552_71180679_1	chr10	-	737	3	FSM	ENSMUSG00000037710.9	ENSMUST00000045887.9	1084	3	105	242	105	-242	multi-exon	FALSE	canonical	3	1606	junction_1	82	15539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACATGTACATTGTACTT	1358	False	NA	-28	True	ATTAAA	-15	NA	71180679	71166551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_71166957_71172043_71172250_71180553
ENSMUSG00000037710.9_71166552_71180784_1	chr10	-	842	3	FSM	ENSMUSG00000037710.9	ENSMUST00000045887.9	1084	3	0	242	0	-242	multi-exon	FALSE	canonical	3	1606	junction_1	82	15802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACATGTACATTGTACTT	1253	False	NA	-28	True	ATTAAA	-15	NA	71180784	71166551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_71166957_71172043_71172250_71180553
ENSMUSG00000037712.18_45696252_45767454_1	chr14	-	3172	15	FSM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	121	0	-33	0	multi-exon	FALSE	canonical	3	310	junction_11	31.8875575504085	1391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTCTTTTGTACTTCTG	NA	False	NA	-5	True	AATAAA	-20	NA	45767454	45696251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_45697481_45699223_45699366_45699572_45699698_45702180_45702403_45702540_45702648_45704794_45704920_45705959_45706010_45706696_45706832_45710228_45710337_45713029_45713133_45713344_45713571_45719888_45720024_45741953_45742188_45766881_45767049_45767390
ENSMUSG00000037712.18_45697209_45767575_1	chr14	-	2336	15	FSM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	0	957	0	-957	multi-exon	FALSE	canonical	3	310	junction_11	31.8875575504085	1633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTTATCATGATACCTT	NA	False	NA	0	True	AATAAA	-17	NA	45767575	45697208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_45697481_45699223_45699366_45699572_45699698_45702180_45702403_45702540_45702648_45704794_45704920_45705959_45706010_45706696_45706832_45710228_45710337_45713029_45713133_45713344_45713571_45719888_45720024_45741953_45742188_45766881_45767049_45767390
ENSMUSG00000037712.18_45719972_45767575_1	chr14	-	631	4	NNC	ENSMUSG00000037712.18	novel	3293	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	176.864040689138	1163	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAAAAGAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	45767575	45719971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_45720017_45741953_45742188_45766881_45767049_45767390
ENSMUSG00000037720.17_67418039_67443872_1	chr5	+	1176	8	NNC	ENSMUSG00000037720.17	novel	6247	8	NA	NA	0	-130	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	153.229453128706	856	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTCTGAAATTTGTTTTA	NA	False	NA	14	True	AATACA	-18	NA	67418038	67443872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441490_67441567_67443438
ENSMUSG00000037720.17_67418039_67443872_2	chr5	+	1184	8	FSM	ENSMUSG00000037720.17	ENSMUST00000037918.12	6247	8	131	4932	0	-130	multi-exon	FALSE	canonical	3	347	junction_1	43.3504937240909	2516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTCTGAAATTTGTTTTA	NA	False	NA	14	True	AATACA	-18	NA	67418038	67443872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438
ENSMUSG00000037720.17_67418039_67445101_1	chr5	+	2413	8	FSM	ENSMUSG00000037720.17	ENSMUST00000037918.12	6247	8	131	3703	0	1099	multi-exon	FALSE	canonical	3	347	junction_1	43.3504937240909	2656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACTGATTTCTAATGATG	NA	False	NA	15	True	AATAAA	-22	NA	67418038	67445101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438
ENSMUSG00000037720.17_67418097_67443872_1	chr5	+	1283	7	FSM	ENSMUSG00000037720.17	ENSMUST00000161369.3	6164	7	-51	4932	0	-130	multi-exon	FALSE	canonical	3	385	junction_4	35.264476932649	911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTCTGAAATTTGTTTTA	NA	False	NA	14	True	AATACA	-18	NA	67418096	67443872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438
ENSMUSG00000037722.9_45614908_45626250_1	chr14	-	1503	6	FSM	ENSMUSG00000037722.9	ENSMUST00000046191.9	2788	6	168	1117	0	703	multi-exon	FALSE	canonical	3	1091	junction_1	71.0419594324368	2998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTTGTCTTGTGTTTTT	NA	False	NA	-1	True	ATTAAA	-30	NA	45626250	45614907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626204
ENSMUSG00000037722.9_45614908_45626315_1	chr14	-	1568	6	FSM	ENSMUSG00000037722.9	ENSMUST00000046191.9	2788	6	103	1117	-65	703	multi-exon	FALSE	canonical	3	1091	junction_1	71.0419594324368	3452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTTGTCTTGTGTTTTT	NA	False	NA	-1	True	ATTAAA	-30	NA	45626315	45614907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626204
ENSMUSG00000037722.9_45615480_45626250_1	chr14	-	931	6	FSM	ENSMUSG00000037722.9	ENSMUST00000046191.9	2788	6	168	1689	0	131	multi-exon	FALSE	canonical	3	1091	junction_1	71.0419594324368	1499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGAATAAGGGTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	45626250	45615479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626204
ENSMUSG00000037722.9_45615621_45626250_1	chr14	-	790	6	FSM	ENSMUSG00000037722.9	ENSMUST00000046191.9	2788	6	168	1830	0	0	multi-exon	FALSE	canonical	3	1091	junction_1	71.0419594324368	752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAATATATTTTCAACT	NA	False	NA	NA	False	AATAAA	-18	NA	45626250	45615620	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626204
ENSMUSG00000037740.9_130405662_130407314_1	chr2	+	972	4	NNC	ENSMUSG00000037740.9	novel	4278	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	258.230302034616	1631	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGCCCATTTACTGGCT	385	False	NA	14	True	NA	NA	NA	130405661	130407314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_130405911_130406005_130406148_130406227_130406352_130406857
ENSMUSG00000037740.9_130405662_130407314_2	chr2	+	977	4	FSM	ENSMUSG00000037740.9	ENSMUST00000145614.2	4278	4	0	3301	0	0	multi-exon	FALSE	canonical	3	506	junction_2	32.273139846559	1680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGCCCATTTACTGGCT	385	False	NA	14	True	NA	NA	NA	130405661	130407314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_130405911_130406000_130406148_130406227_130406352_130406857
ENSMUSG00000037752.5_132454613_132459810_1	chr4	-	1793	3	FSM	ENSMUSG00000037752.5	ENSMUST00000045550.5	4245	3	47	2405	-16	1204	multi-exon	FALSE	canonical	3	48	junction_1	6.5	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCAGTATGTACCACTAAG	4091	False	NA	-11	True	ATTAAA	-19	NA	132459810	132454612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132455882_132458186_132458384_132459483
ENSMUSG00000037752.5_132454613_132459810_2	chr4	-	1551	3	FSM	ENSMUSG00000037752.5	ENSMUST00000150104.2	376	3	29	-1204	-16	1204	multi-exon	FALSE	canonical	3	5	junction_2	21.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCAGTATGTACCACTAAG	4091	False	NA	-11	True	ATTAAA	-19	NA	132459810	132454612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132455882_132458186_132458384_132459725
ENSMUSG00000037772.14_142086898_142094484_1	chr7	+	669	6	NNC	ENSMUSG00000037772.14	novel	692	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	718.597912604817	1360	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGACACTTTGCCTT	NA	False	NA	2	True	AATAAA	-20	NA	142086897	142094484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_142086932_142087401_142087528_142088741_142088865_142089806_142089890_142091003_142091078_142094255
ENSMUSG00000037772.14_142086898_142094484_2	chr7	+	543	5	FSM	ENSMUSG00000037772.14	ENSMUST00000038675.7	692	5	149	0	0	0	multi-exon	FALSE	canonical	3	973	junction_1	229.96847610053	5721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGACACTTTGCCTT	NA	False	NA	2	True	AATAAA	-20	NA	142086897	142094484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_142086932_142088741_142088865_142089806_142089890_142091003_142091078_142094255
ENSMUSG00000037772.14_142086898_142094484_3	chr7	+	503	5	NNC	ENSMUSG00000037772.14	novel	692	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_4	598.550123214422	604	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGACACTTTGCCTT	NA	False	NA	2	True	AATAAA	-20	NA	142086897	142094484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_142086932_142088741_142088865_142089806_142089890_142091003_142091078_142094295
ENSMUSG00000037772.14_142086898_142094484_4	chr7	+	562	5	NNC	ENSMUSG00000037772.14	novel	692	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	624.235732716415	3825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGACACTTTGCCTT	NA	False	NA	2	True	AATAAA	-20	NA	142086897	142094484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_142086932_142088741_142088865_142089806_142089890_142091003_142091078_142094236
ENSMUSG00000037773.15_130266259_130266902_1	chr2	-	474	2	NNC	ENSMUSG00000037773.15	novel	3349	4	NA	NA	-281	-2449	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	29	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCGCACTTCCGCTTCCG	7353	False	NA	NA	False	NA	NA	NA	130266902	130266258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_130266368_130266537
ENSMUSG00000037787.15_111679714_111700437_1	chr12	+	829	5	FSM	ENSMUSG00000037787.15	ENSMUST00000040519.12	1065	5	19	217	0	-217	multi-exon	FALSE	canonical	3	492	junction_3	10.0343161201947	1308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTGGTGAGATGGCT	1560	False	NA	9	True	NA	NA	NA	111679713	111700437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_111679853_111689045_111689244_111690773_111690838_111696455_111696547_111700100
ENSMUSG00000037787.15_111679714_111700654_1	chr12	+	1043	5	NNC	ENSMUSG00000037787.15	novel	1065	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	218.669270817827	2744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGTGCAAGTTGAGAATAA	1560	False	NA	NA	False	TTTAAA	-1	NA	111679713	111700654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_111679853_111689045_111689248_111690780_111690838_111696455_111696547_111700100
ENSMUSG00000037787.15_111679714_111700654_2	chr12	+	955	4	NIC	ENSMUSG00000037787.15	novel	1065	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	240.92230190573	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGTGCAAGTTGAGAATAA	1560	False	NA	NA	False	TTTAAA	-1	NA	111679713	111700654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_111679853_111689045_111689244_111690773_111690838_111700100
ENSMUSG00000037805.16_28547558_28550006_1	chr17	+	2044	4	NIC	ENSMUSG00000037805.16	novel	949	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	5715	junction_1	1410.70297684838	1962	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547557	28550006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_28547593_28547784_28547860_28547940_28549672_28549803
ENSMUSG00000037805.16_28547558_28550006_2	chr17	+	732	6	NNC	ENSMUSG00000037805.16	novel	949	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	3045.3788335772	156273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547557	28550006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_28547593_28547784_28547860_28547924_28548022_28548347_28548497_28549498_28549672_28549803
ENSMUSG00000037805.16_28547558_28550006_3	chr17	+	1037	5	NNC	ENSMUSG00000037805.16	novel	949	6	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_3	3545.96294220625	12545	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547557	28550006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_28547593_28547784_28547860_28547940_28548497_28549503_28549672_28549803
ENSMUSG00000037805.16_28547558_28550006_4	chr17	+	944	6	NNC	ENSMUSG00000037805.16	novel	949	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	3757.62033207188	14140	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547557	28550006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_28547593_28547784_28547860_28547940_28548255_28548347_28548497_28549503_28549672_28549803
ENSMUSG00000037805.16_28547783_28550006_1	chr17	+	916	5	ISM	ENSMUSG00000037805.16	ENSMUST00000129935.8	949	6	225	0	162	0	3prime_fragment	FALSE	canonical	3	728	junction_2	3257.57375204308	24641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547782	28550006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_28547860_28547940_28548255_28548347_28548497_28549498_28549672_28549803
ENSMUSG00000037822.13_65607146_65650176_1	chr5	-	1108	6	NNC	ENSMUSG00000037822.13	novel	1177	6	NA	NA	38	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_5	184.420606223925	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGGTTTAGAATCCATT	NA	False	NA	NA	False	AATAAA	-19	NA	65650176	65607145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65642396_65642471_65650078
ENSMUSG00000037822.13_65607146_65650176_2	chr5	-	1034	5	FSM	ENSMUSG00000037822.13	ENSMUST00000139122.8	4560	5	567	2959	38	0	multi-exon	FALSE	canonical	3	378	junction_4	15.1410039297267	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGGTTTAGAATCCATT	NA	False	NA	NA	False	AATAAA	-19	NA	65650176	65607145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650078
ENSMUSG00000037822.13_65607146_65650285_1	chr5	-	1143	5	FSM	ENSMUSG00000037822.13	ENSMUST00000139122.8	4560	5	458	2959	-61	0	multi-exon	FALSE	canonical	3	378	junction_4	15.1410039297267	1744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGGTTTAGAATCCATT	NA	False	NA	NA	False	AATAAA	-19	NA	65650285	65607145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650078
ENSMUSG00000037822.13_65607146_65650285_2	chr5	-	1217	6	NNC	ENSMUSG00000037822.13	novel	1177	6	NA	NA	-61	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_5	184.420606223925	1233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGGTTTAGAATCCATT	NA	False	NA	NA	False	AATAAA	-19	NA	65650285	65607145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65642396_65642471_65650078
ENSMUSG00000037822.13_65607146_65650403_1	chr5	-	1261	5	FSM	ENSMUSG00000037822.13	ENSMUST00000139122.8	4560	5	340	2959	0	0	multi-exon	FALSE	canonical	3	378	junction_4	15.1410039297267	1767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGGTTTAGAATCCATT	NA	False	NA	NA	False	AATAAA	-19	NA	65650403	65607145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650078
ENSMUSG00000037845.15_50679536_50683518_1	chr9	+	1528	5	FSM	ENSMUSG00000037845.15	ENSMUST00000042391.13	2658	5	0	1130	0	-425	multi-exon	TRUE	canonical	3	72	junction_2	7.15454401062709	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGCCTATGGTATTTCT	NA	False	NA	NA	False	TATAAA	-18	NA	50679535	50683518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_50679756_50679987_50680145_50681409_50681614_50681931_50682091_50682730
ENSMUSG00000037845.15_50679536_50683969_1	chr9	+	1979	5	FSM	ENSMUSG00000037845.15	ENSMUST00000042391.13	2658	5	0	679	0	0	multi-exon	FALSE	canonical	3	72	junction_2	7.15454401062709	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTTCTGGACTCTTGTG	NA	False	NA	2	True	AAAAAG	-17	NA	50679535	50683969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_50679756_50679987_50680145_50681409_50681614_50681931_50682091_50682730
ENSMUSG00000037847.15_18609314_18629295_1	chr19	+	1443	9	FSM	ENSMUSG00000037847.15	ENSMUST00000237347.2	1940	9	0	497	0	4	multi-exon	FALSE	canonical	3	68	junction_8	10.6880482315528	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTCTCTGTGAGA	NA	False	NA	NA	False	CATAAA	-20	NA	18609313	18629295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_18609446_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418_18622503_18628599
ENSMUSG00000037847.15_18609314_18629558_1	chr19	+	1684	10	NNC	ENSMUSG00000037847.15	novel	1768	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	10	junction_9	24.9493313698478	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTGGTAGGTTTTACTT	NA	False	NA	NA	False	AAAAAG	-3	NA	18609313	18629558	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_18609446_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418_18622503_18628599_18629145_18629166
ENSMUSG00000037851.14_49835606_49842550_1	chr13	+	908	4	ISM	ENSMUSG00000037851.14	ENSMUST00000047363.14	4396	34	0	45193	0	761	5prime_fragment	FALSE	canonical	3	1400	junction_1	175.617640217478	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTAATGGTCTCTGTATT	NA	False	NA	NA	False	NA	NA	NA	49835605	49842550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999
ENSMUSG00000037851.14_49835606_49856844_1	chr13	+	1177	10	ISM	ENSMUSG00000037851.14	ENSMUST00000047363.14	4396	34	0	30899	0	-8413	5prime_fragment	FALSE	canonical	3	1400	junction_1	130.116187395044	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAATGGAATCTTTTTGT	NA	False	NA	NA	False	ATTAAA	-18	NA	49835605	49856844	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642
ENSMUSG00000037851.14_49835606_49857297_2	chr13	+	1415	11	NNC	ENSMUSG00000037851.14	novel	4396	34	NA	NA	0	-7960	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	514.720594109076	183	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCTTTTGGTTTTCATTT	NA	False	NA	NA	False	AATAAA	-15	NA	49835605	49857297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49856953
ENSMUSG00000037860.16_173248164_173293272_1	chr1	+	1983	7	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	0	-326	combination_of_known_splicesites	FALSE	canonical	2	2	junction_2	47.3617872222838	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTGAGATATCATTCTTC	NA	False	NA	11	True	NA	NA	NA	173248163	173293272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_173248253_173280393_173280515_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
ENSMUSG00000037860.16_173248164_173293272_2	chr1	+	2073	8	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	0	-326	combination_of_known_splicesites	FALSE	canonical	3	35	junction_1	29.5379382475888	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTGAGATATCATTCTTC	NA	False	NA	11	True	NA	NA	NA	173248163	173293272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_173248253_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
ENSMUSG00000037860.16_173248164_173293272_3	chr1	+	2213	9	ISM	ENSMUSG00000037860.16	ENSMUST00000147604.8	2839	12	69719	334	0	-326	3prime_fragment	FALSE	canonical	3	62	junction_1	21.7884000100971	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTGAGATATCATTCTTC	NA	False	NA	11	True	NA	NA	NA	173248163	173293272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_173248253_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
ENSMUSG00000037860.16_173248164_173293606_1	chr1	+	2547	9	ISM	ENSMUSG00000037860.16	ENSMUST00000147604.8	2839	12	69719	0	0	0	3prime_fragment	FALSE	canonical	3	62	junction_1	21.7884000100971	794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGACTGTTCTATTTT	NA	False	NA	23	True	AATAAA	-41	NA	173248163	173293606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_173248253_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
ENSMUSG00000037894.14_137570248_137572585_1	chr3	+	961	5	NIC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	0	6	combination_of_known_junctions	FALSE	canonical	3	145	junction_1	6367.41546371053	46835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTAAACTTGCTTAATAA	NA	False	NA	3	True	AATAAA	-18	NA	137570247	137572585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_137570448_137570893_137570972_137571280_137571395_137571771_137571902_137572146
ENSMUSG00000037894.14_137570248_137572585_2	chr3	+	965	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6351.56427090996	31215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTAAACTTGCTTAATAA	NA	False	NA	3	True	AATAAA	-18	NA	137570247	137572585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571405_137571787_137571902_137572146
ENSMUSG00000037894.14_137570248_137572585_3	chr3	+	962	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6351.56427090996	42783	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTAAACTTGCTTAATAA	NA	False	NA	3	True	AATAAA	-18	NA	137570247	137572585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571395_137571780_137571902_137572146
ENSMUSG00000037894.14_137570248_137572585_4	chr3	+	959	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7379.50570837912	13204	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTAAACTTGCTTAATAA	NA	False	NA	3	True	AATAAA	-18	NA	137570247	137572585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571395_137571780_137571899_137572146
ENSMUSG00000037894.14_137570248_137572585_5	chr3	+	972	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6351.56427090996	74281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTAAACTTGCTTAATAA	NA	False	NA	3	True	AATAAA	-18	NA	137570247	137572585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571405_137571780_137571902_137572146
ENSMUSG00000037894.14_137570352_137572585_1	chr3	+	1112	4	ISM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	104	98	0	6	intron_retention	FALSE	canonical	3	13832	junction_1	803.393220451023	871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTAAACTTGCTTAATAA	NA	False	NA	3	True	AATAAA	-18	NA	137570351	137572585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771
ENSMUSG00000037894.14_137570352_137572585_2	chr3	+	857	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6125.95067622161	13500	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTAAACTTGCTTAATAA	NA	False	NA	3	True	AATAAA	-18	NA	137570351	137572585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_137570458_137570893_137570972_137571290_137571395_137571771_137571902_137572146
ENSMUSG00000037894.14_137570352_137572585_3	chr3	+	851	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6351.56427090996	5120	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTAAACTTGCTTAATAA	NA	False	NA	3	True	AATAAA	-18	NA	137570351	137572585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571379_137571771_137571902_137572146
ENSMUSG00000037894.14_137570352_137572585_4	chr3	+	885	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6429.91232444113	15048	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTAAACTTGCTTAATAA	NA	False	NA	3	True	AATAAA	-18	NA	137570351	137572585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_137570458_137570875_137570972_137571280_137571395_137571771_137571902_137572146
ENSMUSG00000037894.14_137570352_137572585_5	chr3	+	865	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7379.50570837912	6186	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTAAACTTGCTTAATAA	NA	False	NA	3	True	AATAAA	-18	NA	137570351	137572585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571405_137571780_137571899_137572146
ENSMUSG00000037894.14_137570352_137572585_6	chr3	+	869	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6351.56427090996	6558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTAAACTTGCTTAATAA	NA	False	NA	3	True	AATAAA	-18	NA	137570351	137572585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571413_137571787_137571902_137572146
ENSMUSG00000037894.14_137570352_137572683_1	chr3	+	956	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6351.56427090996	27850	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	32	True	ATTAAA	-21	NA	137570351	137572683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571395_137571780_137571902_137572146
ENSMUSG00000037894.14_137570352_137572683_2	chr3	+	955	5	NIC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	145	junction_1	6367.41546371053	39460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	32	True	ATTAAA	-21	NA	137570351	137572683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_137570448_137570893_137570972_137571280_137571395_137571771_137571902_137572146
ENSMUSG00000037894.14_137570352_137572683_3	chr3	+	953	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7379.50570837912	9931	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	32	True	ATTAAA	-21	NA	137570351	137572683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571395_137571780_137571899_137572146
ENSMUSG00000037894.14_137570352_137572683_4	chr3	+	959	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6351.56427090996	23165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	32	True	ATTAAA	-21	NA	137570351	137572683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571405_137571787_137571902_137572146
ENSMUSG00000037894.14_137570352_137572683_5	chr3	+	966	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6351.56427090996	51929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	32	True	ATTAAA	-21	NA	137570351	137572683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571405_137571780_137571902_137572146
ENSMUSG00000037904.15_110942861_110945429_1	chr12	-	1458	3	FSM	ENSMUSG00000037904.15	ENSMUST00000128353.8	2577	3	45	1074	0	0	multi-exon	FALSE	canonical	3	78	junction_1	17	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGGATCTGCCTGGTCT	NA	False	NA	-7	True	NA	NA	NA	110945429	110942860	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_110943983_110944381_110944562_110945273
ENSMUSG00000037905.14_125518632_125531932_1	chr5	+	971	3	FSM	ENSMUSG00000037905.14	ENSMUST00000049040.14	6473	3	0	5502	0	142	multi-exon	FALSE	canonical	3	373	junction_1	23.5	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTGGTATTTCCCACTGT	NA	False	NA	11	True	AATAAA	-17	NA	125518631	125531932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_125518957_125528733_125528837_125531389
ENSMUSG00000037905.14_125518632_125532159_1	chr5	+	1296	4	FSM	ENSMUSG00000037905.14	ENSMUST00000198811.2	745	4	-182	-369	0	369	multi-exon	FALSE	canonical	3	17	junction_2	166.423823080979	759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAGCTTTGAAGGGAACG	NA	False	NA	29	True	AATAAA	-21	NA	125518631	125532159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_125518957_125528733_125528837_125529211_125529310_125531389
ENSMUSG00000037905.14_125518632_125532159_2	chr5	+	1198	3	FSM	ENSMUSG00000037905.14	ENSMUST00000049040.14	6473	3	0	5275	0	369	multi-exon	FALSE	canonical	3	373	junction_1	23.5	767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAGCTTTGAAGGGAACG	NA	False	NA	29	True	AATAAA	-21	NA	125518631	125532159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_125518957_125528733_125528837_125531389
ENSMUSG00000037916.15_4057503_4062665_1	chr19	-	1534	10	NNC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	442.89677754027	4103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTTGTCTGGAACTTTG	6567	False	NA	-3	True	AATAAA	-24	NA	4062665	4057502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_4057686_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
ENSMUSG00000037916.15_4057503_4062665_2	chr19	-	1502	10	NNC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	454.671065472367	3606	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTTGTCTGGAACTTTG	6567	False	NA	-3	True	AATAAA	-24	NA	4062665	4057502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061417_4062550
ENSMUSG00000037916.15_4057503_4062665_3	chr19	-	1506	10	NNC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	452.90268215829	3049	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTTGTCTGGAACTTTG	6567	False	NA	-3	True	AATAAA	-24	NA	4062665	4057502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061265_4061345_4061429_4062550
ENSMUSG00000037916.15_4057503_4062665_4	chr19	-	1524	10	NIC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_7	452.424088169005	5194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTTGTCTGGAACTTTG	6567	False	NA	-3	True	AATAAA	-24	NA	4062665	4057502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060020_4061101_4061273_4061345_4061429_4062550
ENSMUSG00000037916.15_4057503_4062665_5	chr19	-	1538	10	NIC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_2	451.977902879508	2666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTTGTCTGGAACTTTG	6567	False	NA	-3	True	AATAAA	-24	NA	4062665	4057502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_4057666_4057769_4057940_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
ENSMUSG00000037916.15_4057503_4062724_1	chr19	-	1402	9	NIC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	480.161951845416	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTTGTCTGGAACTTTG	6508	False	NA	-3	True	AATAAA	-24	NA	4062724	4057502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061345_4061429_4062550
ENSMUSG00000037916.15_4057503_4062724_2	chr19	-	1677	9	NIC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	-16	0	intron_retention	FALSE	canonical	3	1250	junction_5	96.4737658640938	2747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTTGTCTGGAACTTTG	6508	False	NA	-3	True	AATAAA	-24	NA	4062724	4057502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
ENSMUSG00000037935.17_99099873_99121272_1	chr11	-	2348	11	FSM	ENSMUSG00000037935.17	ENSMUST00000103133.4	2919	11	571	0	0	0	multi-exon	FALSE	canonical	3	598	junction_2	51.2922021363872	1959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCAGTGTTTTTATTGC	NA	False	NA	-2	True	AATAAA	-15	NA	99121272	99099872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99115863_99115969_99119100_99119145_99119322_99119375_99121227
ENSMUSG00000037935.17_99100818_99103992_1	chr11	-	331	2	NNC	ENSMUSG00000037935.17	novel	610	2	NA	NA	277	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	321	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGGTCTGTGTATTAA	NA	False	NA	-1	True	AATGAA	-36	NA	99103992	99100817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_99101102_99103945
ENSMUSG00000037935.17_99100818_99121272_1	chr11	-	1298	10	NIC	ENSMUSG00000037935.17	novel	2919	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_7	198.840962568234	817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGGTCTGTGTATTAA	NA	False	NA	-1	True	AATGAA	-36	NA	99121272	99100817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99119100_99119145_99119322_99119375_99121227
ENSMUSG00000037935.17_99100818_99121272_2	chr11	-	1351	10	NIC	ENSMUSG00000037935.17	novel	2919	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_9	208.072874223562	1602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGGTCTGTGTATTAA	NA	False	NA	-1	True	AATGAA	-36	NA	99121272	99100817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99115863_99115969_99119100_99119145_99121227
ENSMUSG00000037935.17_99100818_99121272_3	chr11	-	1403	11	FSM	ENSMUSG00000037935.17	ENSMUST00000103133.4	2919	11	571	945	0	0	multi-exon	FALSE	canonical	3	598	junction_2	51.2922021363872	1737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGGTCTGTGTATTAA	NA	False	NA	-1	True	AATGAA	-36	NA	99121272	99100817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99115863_99115969_99119100_99119145_99119322_99119375_99121227
ENSMUSG00000037938.5_128971620_128975400_1	chr2	+	665	4	NNC	ENSMUSG00000037938.5	novel	1325	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	300.274319026231	3790	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGGAGAAGAGCGATGAGA	3825	False	NA	40	True	AATAAA	-44	NA	128971619	128975400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_128971778_128972097_128972239_128972320_128972487_128975200
ENSMUSG00000037938.5_128971724_128975400_2	chr2	+	561	4	NNC	ENSMUSG00000037938.5	novel	1325	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	300.274319026231	3572	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGGAGAAGAGCGATGAGA	3929	False	NA	40	True	AATAAA	-44	NA	128971723	128975400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_128971778_128972097_128972239_128972320_128972487_128975200
ENSMUSG00000037938.5_128971724_128976054_2	chr2	+	1215	4	NNC	ENSMUSG00000037938.5	novel	1325	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	300.274319026231	4358	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCTAGGTTTGTGTGTT	3929	False	NA	45	True	NA	NA	NA	128971723	128976054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_128971778_128972097_128972239_128972320_128972487_128975200
ENSMUSG00000037957.15_110704452_110770096_1	chr12	+	701	3	FSM	ENSMUSG00000037957.15	ENSMUST00000193053.6	1351	3	74	576	0	-367	multi-exon	FALSE	canonical	3	22	junction_2	64	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTCTTGCTTTTTACTCT	5372	False	NA	NA	False	AGTAAA	-15	NA	110704451	110770096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_110704712_110745729_110745913_110769838
ENSMUSG00000037958.14_76936274_76969261_1	chr11	-	1958	7	FSM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	0	1156	0	-1156	multi-exon	FALSE	canonical	3	222	junction_6	27.2457947825593	1363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTTTGAGTTTTTTT	NA	False	NA	-5	True	AATAAA	-14	NA	76969261	76936273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_76937581_76939178_76939288_76940098_76940307_76941409_76941539_76945769_76945827_76967479_76967571_76969204
ENSMUSG00000037958.14_76936985_76969261_1	chr11	-	1247	7	FSM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	0	1867	0	-1867	multi-exon	FALSE	canonical	3	222	junction_6	27.2457947825593	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAGCACACAAAAGCAAGG	NA	False	NA	NA	False	NA	NA	NA	76969261	76936984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_76937581_76939178_76939288_76940098_76940307_76941409_76941539_76945769_76945827_76967479_76967571_76969204
ENSMUSG00000037960.12_49356426_49369502_1	chr13	-	800	6	NNC	ENSMUSG00000037960.12	novel	804	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	152.471112017982	621	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTGTCGAATGTCTTC	NA	False	NA	-6	True	ATTAAA	-14	NA	49369502	49356425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_49356712_49357193_49357266_49357404_49357465_49358667_49358822_49361479_49361618_49369412
ENSMUSG00000037966.16_49341001_49349721_1	chr13	+	1203	4	FSM	ENSMUSG00000037966.16	ENSMUST00000131280.2	706	4	-11	-486	0	1	multi-exon	FALSE	canonical	2	4	junction_2	185.030327844443	1713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGGTTCCATGTGCCAC	NA	False	NA	14	True	AATAAA	-16	NA	49341000	49349721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_49341114_49347211_49347441_49348314_49348534_49349079
ENSMUSG00000037971.11_50675030_50679460_1	chr9	-	821	3	NIC	ENSMUSG00000037971.11	novel	2082	4	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	2	3	junction_1	11	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCAAAAAAAAATCTCTATT	NA	False	NA	NA	False	AATAAA	-10	NA	50679460	50675029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_50675317_50675995_50676227_50679157
ENSMUSG00000037971.11_50675030_50679460_2	chr9	-	888	4	FSM	ENSMUSG00000037971.11	ENSMUST00000042468.9	2082	4	292	902	0	0	multi-exon	TRUE	canonical	3	19	junction_2	3.74165738677394	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCAAAAAAAAATCTCTATT	NA	False	NA	NA	False	AATAAA	-10	NA	50679460	50675029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_50675317_50675523_50675591_50675995_50676227_50679157
ENSMUSG00000037991.10_10652932_10658181_1	chr16	+	589	2	NNC	ENSMUSG00000037991.10	novel	3742	2	NA	NA	0	-2921	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	0	21	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATACCTCTGAATTTCAGT	NA	False	NA	3	True	NA	NA	NA	10652931	10658181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_10653032_10657692
ENSMUSG00000038005.16_61343485_61360609_1	chr8	+	586	4	NIC	ENSMUSG00000038005.16	novel	1191	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	388.477655585091	753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCTCTTCTAGTGTTTC	NA	False	NA	17	True	AATAAA	-30	NA	61343484	61360609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_61343571_61357033_61357122_61358581_61358755_61360370
ENSMUSG00000038005.16_61343485_61360609_2	chr8	+	737	5	NIC	ENSMUSG00000038005.16	novel	1191	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	26	junction_1	382.667610335654	1042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCTCTTCTAGTGTTTC	NA	False	NA	17	True	AATAAA	-30	NA	61343484	61360609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_61343571_61353117_61353269_61357033_61357122_61358581_61358755_61360370
ENSMUSG00000038005.16_61343485_61360609_3	chr8	+	1253	9	NNC	ENSMUSG00000038005.16	novel	1191	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	365.929211050443	7286	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCTCTTCTAGTGTTTC	NA	False	NA	17	True	AATAAA	-30	NA	61343484	61360609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_61343571_61346734_61346895_61348494_61348685_61349771_61349871_61353117_61353269_61357033_61357122_61358581_61358755_61359405_61359473_61360370
ENSMUSG00000038007.15_86848928_86850728_1	chr4	+	612	2	FSM	ENSMUSG00000038007.15	ENSMUST00000135874.2	2943	2	0	2331	0	0	multi-exon	FALSE	canonical	3	467	junction_1	0	1259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAGAAAATAAAGGCTCCC	4120	False	NA	NA	False	NA	NA	NA	86848927	86850728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_86849080_86850268
ENSMUSG00000038007.15_86848928_86850857_1	chr4	+	741	2	FSM	ENSMUSG00000038007.15	ENSMUST00000135874.2	2943	2	0	2202	0	129	multi-exon	FALSE	canonical	3	467	junction_1	0	6176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTGGTGTGGTTCAAGA	4120	False	NA	22	True	NA	NA	NA	86848927	86850857	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_86849080_86850268
ENSMUSG00000038009.8_98997161_99002618_1	chr15	+	1409	3	NIC	ENSMUSG00000038009.8	novel	381	3	NA	NA	-132	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	26	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCACGGAATCCTAGCCCA	3891	False	NA	3	True	AATAAA	-21	NA	98997160	99002618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_98997195_98998703_98999657_99002196
ENSMUSG00000038009.8_98997293_99002618_1	chr15	+	1448	3	NNC	ENSMUSG00000038009.8	novel	1564	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	18.5	246	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCACGGAATCCTAGCCCA	4023	False	NA	3	True	AATAAA	-21	NA	98997292	99002618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_98997366_98998703_98999657_99002196
ENSMUSG00000038028.10_127064433_127086513_1	chr6	-	1297	6	FSM	ENSMUSG00000038028.10	ENSMUST00000039913.9	3651	6	0	2354	0	411	multi-exon	FALSE	canonical	3	974	junction_4	62.3903838744401	4837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGTGTTCAGAGTGAAGC	NA	False	NA	-10	True	AAGAAA	-39	NA	127086513	127064432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_127065266_127066155_127066267_127068146_127068225_127069583_127069706_127078811_127078850_127086398
ENSMUSG00000038028.10_127064499_127086547_1	chr6	-	1265	6	FSM	ENSMUSG00000038028.10	ENSMUST00000039913.9	3651	6	-34	2420	-27	345	multi-exon	FALSE	canonical	3	974	junction_4	62.3903838744401	1644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTCGCTCACCAAGTGCTT	NA	False	NA	-12	True	NA	NA	NA	127086547	127064498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_127065266_127066155_127066267_127068146_127068225_127069583_127069706_127078811_127078850_127086398
ENSMUSG00000038028.10_127064647_127086513_1	chr6	-	1083	6	FSM	ENSMUSG00000038028.10	ENSMUST00000039913.9	3651	6	0	2568	0	197	multi-exon	FALSE	canonical	3	974	junction_4	62.3903838744401	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCATTATGTCTCTGATCT	NA	False	NA	-7	True	NA	NA	NA	127086513	127064646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_127065266_127066155_127066267_127068146_127068225_127069583_127069706_127078811_127078850_127086398
ENSMUSG00000038034.16_172139934_172147404_1	chr1	+	2434	6	ISM	ENSMUSG00000038034.16	ENSMUST00000039506.15	2278	7	0	4	0	2	intron_retention	FALSE	canonical	3	675	junction_3	48.3553513067582	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGAGGCCTGTTGTGTCTTC	3743	False	NA	15	True	AATAAA	-15	NA	172139933	172147404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120_172146535_172146859
ENSMUSG00000038045.15_79192326_79202529_1	chr17	-	813	5	NNC	ENSMUSG00000038045.15	novel	764	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	81.8516187988973	1265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79202529	79192325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971_79202099_79202415
ENSMUSG00000038045.15_79192326_79202529_2	chr17	-	1130	4	ISM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	0	0	0	0	intron_retention	FALSE	canonical	3	141	junction_3	32.273139846559	1379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79202529	79192325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971
ENSMUSG00000038045.15_79192326_79202529_3	chr17	-	829	5	NNC	ENSMUSG00000038045.15	novel	764	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	82.6661206299171	1216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79202529	79192325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971_79202099_79202399
ENSMUSG00000038045.15_79192326_79202529_4	chr17	-	878	2	NIC	ENSMUSG00000038045.15	novel	764	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	29	junction_1	0	700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79202529	79192325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_79192646_79201971
ENSMUSG00000038045.15_79192326_79223296_1	chr17	-	1145	7	NNC	ENSMUSG00000038045.15	novel	2060	7	NA	NA	-8875	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	87.1596555497758	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79223296	79192325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971_79202099_79204986_79205077_79212937_79213051_79223053
ENSMUSG00000038045.15_79192326_79223399_1	chr17	-	1048	8	NNC	ENSMUSG00000038045.15	novel	2060	7	NA	NA	-8978	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	86.9874492471794	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79223399	79192325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971_79202099_79204986_79205077_79212937_79213051_79223053_79223159_79223358
ENSMUSG00000038045.15_79192326_79223496_1	chr17	-	1145	8	NNC	ENSMUSG00000038045.15	novel	2060	7	NA	NA	-9075	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	86.9874492471794	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79223496	79192325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971_79202099_79204986_79205077_79212937_79213051_79223053_79223159_79223358
ENSMUSG00000038046.5_76112620_76134551_1	chr11	+	1150	9	NIC	ENSMUSG00000038046.5	novel	1510	4	NA	NA	-21921	-1159	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTCGACCGCGCGCTCG	NA	False	NA	NA	False	NA	NA	NA	76112619	76134551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_76112858_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
ENSMUSG00000038046.5_76112620_76134551_2	chr11	+	1148	9	NNC	ENSMUSG00000038046.5	novel	1510	4	NA	NA	-21921	-1159	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTCGACCGCGCGCTCG	NA	False	NA	NA	False	NA	NA	NA	76112619	76134551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_76112858_76123847_76123935_76124027_76124142_76124725_76124807_76125210_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
ENSMUSG00000038059.8_60607263_60634648_1	chr18	-	1579	2	FSM	ENSMUSG00000038059.8	ENSMUST00000042710.8	1990	2	411	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTTTTGTTTGTTTGTT	NA	False	NA	2	True	GATAAA	-15	NA	60634648	60607262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_60608658_60634464
ENSMUSG00000038065.14_54658739_54676245_1	chr6	+	582	3	FSM	ENSMUSG00000038065.14	ENSMUST00000190641.7	5303	3	130	4591	0	-1881	multi-exon	TRUE	canonical	3	54	junction_2	0.5	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATATCTGTGACGAGGTTT	NA	False	NA	NA	False	AATGAA	-27	NA	54658738	54676245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_54658917_54665990_54666114_54675964
ENSMUSG00000038065.14_54658739_54677005_1	chr6	+	1342	3	FSM	ENSMUSG00000038065.14	ENSMUST00000190641.7	5303	3	130	3831	0	-1121	multi-exon	FALSE	canonical	3	54	junction_2	0.5	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTTATTCTTTAGAGAAT	NA	False	NA	NA	False	AATAAA	-23	NA	54658738	54677005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_54658917_54665990_54666114_54675964
ENSMUSG00000038069.7_48163261_48166967_2	chr8	-	2582	3	FSM	ENSMUSG00000038069.7	ENSMUST00000038738.7	3464	3	0	882	0	-781	multi-exon	FALSE	canonical	3	60	junction_1	33.5	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTTGTGTTTTTTTTTCT	NA	False	NA	-1	True	ATTAAA	-27	NA	48166967	48163260	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_48165330_48165953_48166054_48166554
ENSMUSG00000038079.15_59139749_59158965_1	chr1	-	1787	11	NIC	ENSMUSG00000038079.15	novel	1823	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_10	51.7934358775318	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATTAACTGAAGGTTT	4340	False	NA	-10	True	AATAAA	-24	NA	59158965	59139748	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59158861
ENSMUSG00000038079.15_59139749_59159253_1	chr1	-	1867	12	NNC	ENSMUSG00000038079.15	novel	1869	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	73.6320986419185	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATTAACTGAAGGTTT	4052	False	NA	-10	True	AATAAA	-24	NA	59159253	59139748	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59157124_59157166_59159110
ENSMUSG00000038079.15_59140070_59158965_2	chr1	-	1466	11	NIC	ENSMUSG00000038079.15	novel	1823	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_10	51.7934358775318	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAAAAGCAGGTGATC	4340	False	NA	NA	False	NA	NA	NA	59158965	59140069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59158861
ENSMUSG00000038084.17_29398210_29470697_1	chr16	+	3167	29	FSM	ENSMUSG00000038084.17	ENSMUST00000160597.8	6230	29	58	3005	0	0	multi-exon	TRUE	canonical	3	145	junction_5	76.2263931339013	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACGTGTGTTCCAGGCAC	NA	False	NA	9	True	AATAAA	-19	NA	29398209	29470697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
ENSMUSG00000038084.17_29398210_29470697_2	chr16	+	3278	30	NIC	ENSMUSG00000038084.17	novel	4017	28	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	253	junction_5	68.2954691456644	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACGTGTGTTCCAGGCAC	NA	False	NA	9	True	AATAAA	-19	NA	29398209	29470697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
ENSMUSG00000038095.16_124531013_124563647_1	chr5	-	2094	16	NIC	ENSMUSG00000038095.16	novel	2413	17	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_14	121.688491193247	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGATCCAGATTCCATT	NA	False	NA	NA	False	NA	NA	NA	124563647	124531012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124552461_124552591_124563509
ENSMUSG00000038095.16_124531013_124563977_1	chr5	-	2334	17	NIC	ENSMUSG00000038095.16	novel	2413	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_16	144.76446387149	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGATCCAGATTCCATT	NA	False	NA	NA	False	NA	NA	NA	124563977	124531012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548443_124552461_124552591_124563909
ENSMUSG00000038102.16_47943163_47958778_1	chr8	-	2069	11	ISM	ENSMUSG00000038102.16	ENSMUST00000123958.8	3932	23	19274	0	5605	0	3prime_fragment	TRUE	canonical	3	114	junction_2	18.0930926046378	142	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGTCGTAAATACCTTT	NA	False	NA	-10	True	AATAAA	-16	NA	47958778	47943162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_47943954_47946273_47946442_47948037_47948172_47949953_47950046_47951688_47951801_47954587_47954745_47954842_47954909_47956346_47956467_47956916_47957039_47958368_47958518_47958620
ENSMUSG00000038102.16_47943691_47958778_1	chr8	-	1541	11	ISM	ENSMUSG00000038102.16	ENSMUST00000123958.8	3932	23	19274	528	5605	-527	3prime_fragment	FALSE	canonical	3	114	junction_2	18.0930926046378	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTGAGGTCATCGTTGCT	NA	False	NA	NA	False	AATAAA	-29	NA	47958778	47943690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_47943954_47946273_47946442_47948037_47948172_47949953_47950046_47951688_47951801_47954587_47954745_47954842_47954909_47956346_47956467_47956916_47957039_47958368_47958518_47958620
ENSMUSG00000038102.16_47977692_47986502_1	chr8	-	1145	6	ISM	ENSMUSG00000038102.16	ENSMUST00000125065.8	4646	29	3	34528	0	0	5prime_fragment	FALSE	canonical	3	108	junction_5	19.61224107541	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATATCATTTTACCTTTA	4054	False	NA	NA	False	AATAAA	-23	NA	47986502	47977691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_47978106_47979974_47980090_47980994_47981066_47982363_47982534_47983686_47983913_47986353
ENSMUSG00000038122.10_56099606_56104785_1	chr10	-	619	3	NNC	ENSMUSG00000038122.10	novel	7240	33	NA	NA	0	-69347	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	5	3913	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAACTCTCTGGGTTCATG	NA	False	NA	NA	False	NA	NA	NA	56104785	56099605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_56099851_56100659_56100822_56104573
ENSMUSG00000038127.16_27207730_27265133_1	chr16	+	1143	11	FSM	ENSMUSG00000038127.16	ENSMUST00000100026.10	7089	11	111	5835	0	0	multi-exon	FALSE	canonical	3	85	junction_6	12.5415310070182	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTGCCATTCTGGGAG	NA	False	NA	NA	False	NA	NA	NA	27207729	27265133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_27207888_27224396_27224460_27225400_27225528_27228073_27228165_27235997_27236116_27254311_27254428_27255117_27255163_27255247_27255353_27257050_27257128_27263293_27263401_27264997
ENSMUSG00000038127.16_27207730_27265545_1	chr16	+	1555	11	FSM	ENSMUSG00000038127.16	ENSMUST00000100026.10	7089	11	111	5423	0	412	multi-exon	FALSE	canonical	3	85	junction_6	12.5415310070182	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGCAGTGAAGTGTGTTC	NA	False	NA	NA	False	AATAAA	-16	NA	27207729	27265545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_27207888_27224396_27224460_27225400_27225528_27228073_27228165_27235997_27236116_27254311_27254428_27255117_27255163_27255247_27255353_27257050_27257128_27263293_27263401_27264997
ENSMUSG00000038141.12_6320745_6341425_1	chr17	+	630	6	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	0	-14614	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_5	194.457604634018	465	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAAACAGGCACTGTTTA	NA	False	NA	NA	False	NA	NA	NA	6320744	6341425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6341286
ENSMUSG00000038141.12_6320745_6358589_1	chr17	+	1782	17	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	237.645407790157	614	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGACTTTTTGTTGCTG	NA	False	NA	38	True	AATAAA	-21	NA	6320744	6358589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353587_6354523_6354611_6354851_6354919_6358271
ENSMUSG00000038141.12_6320849_6358589_1	chr17	+	1678	17	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	104	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	237.645407790157	531	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGACTTTTTGTTGCTG	NA	False	NA	38	True	AATAAA	-21	NA	6320848	6358589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353587_6354523_6354611_6354851_6354919_6358271
ENSMUSG00000038141.12_6350971_6356064_1	chr17	+	924	7	NNC	ENSMUSG00000038141.12	novel	4499	17	NA	NA	3093	25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	397.7376647993	72	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTGAGTCTGTGGGAGG	NA	False	NA	NA	False	AATAAA	-35	NA	6350970	6356064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_6351074_6351166_6351270_6351676_6351729_6353495_6353587_6354523_6354611_6354851_6354919_6355643
ENSMUSG00000038150.8_98472082_98478071_1	chr11	-	2061	4	FSM	ENSMUSG00000038150.8	ENSMUST00000052919.8	2184	4	123	0	123	0	multi-exon	FALSE	canonical	3	195	junction_2	8.33999733546454	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGCTTCCTG	1446	False	NA	1	True	AATAAA	-23	NA	98478071	98472081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_98473674_98473961_98474114_98474767_98474967_98477953
ENSMUSG00000038151.14_44315225_44317241_1	chr10	-	1201	2	NIC	ENSMUSG00000038151.14	novel	4025	7	NA	NA	15965	438	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCTTTGTAATTTGAGTA	NA	False	NA	NA	False	ATTAAA	-22	NA	44317241	44315224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_44316239_44317054
ENSMUSG00000038155.12_4090287_4092237_1	chr19	-	662	6	NIC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	1296.51616264511	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	4092237	4090286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091902_4091939_4092164
ENSMUSG00000038155.12_4090287_4092237_2	chr19	-	757	7	NNC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1200.52567189914	17749	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	4092237	4090286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091474_4091583_4091691_4091902_4091939_4092164
ENSMUSG00000038155.12_4090287_4092237_3	chr19	-	935	6	NIC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-19	0	intron_retention	FALSE	canonical	3	1174	junction_5	1038.62948157656	4749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	4092237	4090286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_4090540_4090707_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092164
ENSMUSG00000038155.12_4090287_4092237_4	chr19	-	733	6	NIC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	1323.55687448632	1242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	4092237	4090286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4092164
ENSMUSG00000038155.12_4090287_4092237_5	chr19	-	766	7	NNC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1296.93094993099	16155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	4092237	4090286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_4090540_4090707_4090816_4090981_4091066_4091380_4091486_4091583_4091691_4091902_4091939_4092164
ENSMUSG00000038155.12_4090287_4092309_2	chr19	-	836	6	NNC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1326.3840469487	12057	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	4092309	4090286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091722_4092164
ENSMUSG00000038155.12_4090287_4092309_3	chr19	-	823	6	NNC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1326.3840469487	4084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	4092309	4090286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091709_4092164
ENSMUSG00000038155.12_4090287_4096023_1	chr19	-	760	6	NIC	ENSMUSG00000038155.12	novel	797	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	51	junction_5	1308.39024759435	1146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	4096023	4090286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4095923
ENSMUSG00000038155.12_4090287_4096023_2	chr19	-	901	8	NIC	ENSMUSG00000038155.12	novel	797	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_6	1378.94109033426	5750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	4096023	4090286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092566_4092672_4095923
ENSMUSG00000038155.12_4090395_4092237_1	chr19	-	661	7	FSM	ENSMUSG00000038155.12	ENSMUST00000042700.12	797	7	26	110	-19	0	multi-exon	FALSE	canonical	3	1174	junction_6	961.706469424706	770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAACATGTGAACCGTCCC	NA	False	NA	NA	False	NA	NA	NA	4092237	4090394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092164
ENSMUSG00000038160.8_44144411_44239311_1	chr10	+	1319	8	FSM	ENSMUSG00000038160.8	ENSMUST00000039286.5	2352	8	57	976	0	-976	multi-exon	FALSE	canonical	3	249	junction_3	36.7828709025918	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAATGTGCCACAGTTTG	NA	False	NA	NA	False	AATGAA	-12	NA	44144410	44239311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911
ENSMUSG00000038160.8_44144411_44239635_1	chr10	+	1643	8	FSM	ENSMUSG00000038160.8	ENSMUST00000039286.5	2352	8	57	652	0	-652	multi-exon	FALSE	canonical	3	249	junction_3	36.7828709025918	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACATACAGTTTGTCACTT	NA	False	NA	15	True	AATAAA	-27	NA	44144410	44239635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911
ENSMUSG00000038172.15_83144656_83158431_1	chr4	-	1277	5	ISM	ENSMUSG00000038172.15	ENSMUST00000102823.10	8831	20	84061	6119	-7024	0	3prime_fragment	FALSE	canonical	3	157	junction_3	8.73212459828649	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTTAGTGCTGAAGCCTG	NA	False	NA	NA	False	AATAAA	-23	NA	83158431	83144655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_83145462_83148644_83148762_83150947_83151066_83155478_83155588_83158304
ENSMUSG00000038172.15_83145081_83158431_1	chr4	-	852	5	ISM	ENSMUSG00000038172.15	ENSMUST00000102823.10	8831	20	84061	6544	-7024	-425	3prime_fragment	FALSE	canonical	3	157	junction_3	8.73212459828649	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTTTTTTAATGTAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	83158431	83145080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_83145462_83148644_83148762_83150947_83151066_83155478_83155588_83158304
ENSMUSG00000038175.11_45543218_45545415_1	chr13	+	1053	2	ISM	ENSMUSG00000038175.11	ENSMUST00000038275.11	3065	7	0	20083	0	-19106	5prime_fragment	FALSE	canonical	3	48	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGTTGTTGTTTTTTTC	4395	False	NA	NA	False	ATTAAA	-14	NA	45543217	45545415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_45543520_45544664
ENSMUSG00000038181.17_24797620_24798724_1	chr5	+	498	4	NIC	ENSMUSG00000038181.17	novel	5371	5	NA	NA	-865	-669	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTATGTCATAGCACGCTG	NA	False	NA	NA	False	NA	NA	NA	24797619	24798724	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_24797803_24798014_24798117_24798222_24798346_24798634
ENSMUSG00000038181.17_24797620_24803637_1	chr5	+	1339	12	NIC	ENSMUSG00000038181.17	novel	5371	5	NA	NA	-865	4083	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	111	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGCTCTGCCCGGGCGG	NA	False	NA	NA	False	NA	NA	NA	24797619	24803637	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_24797803_24798014_24798117_24798222_24798346_24798634_24798771_24798919_24799018_24799829_24799992_24800140_24800243_24800387_24800484_24800720_24800844_24800949_24801073_24801804_24801848_24803589
ENSMUSG00000038187.15_112914853_112968599_1	chr7	-	2456	10	NIC	ENSMUSG00000038187.15	novel	2581	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	63	junction_7	47.410734836931	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTTCTGACCAACTTTA	NA	False	NA	-19	True	AATAAA	-14	NA	112968599	112914852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112964111_112964177_112968078_112968166_112968405
ENSMUSG00000038206.14_57004144_57045095_1	chr8	+	1673	6	FSM	ENSMUSG00000038206.14	ENSMUST00000040218.13	3571	6	19	1879	0	-333	multi-exon	TRUE	canonical	3	53	junction_4	8.56504524214554	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGTTTGGAAATTTATTT	NA	False	NA	NA	False	ACTAAA	-21	NA	57004143	57045095	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_57004412_57017592_57017930_57022318_57022446_57041041_57041161_57043092_57043290_57044470
ENSMUSG00000038206.14_57004144_57045324_1	chr8	+	1902	6	FSM	ENSMUSG00000038206.14	ENSMUST00000040218.13	3571	6	19	1650	0	-104	multi-exon	FALSE	canonical	3	53	junction_4	8.56504524214554	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTGAGAATATAAAAATGT	NA	False	NA	8	True	AATAAA	-21	NA	57004143	57045324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_57004412_57017592_57017930_57022318_57022446_57041041_57041161_57043092_57043290_57044470
ENSMUSG00000038215.16_56984557_57003911_1	chr8	-	1566	11	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_10	38.0914688611505	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003911	56984556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003722
ENSMUSG00000038217.14_75358905_75361725_1	chr11	+	1395	5	FSM	ENSMUSG00000038217.14	ENSMUST00000043598.14	1153	5	0	-242	0	0	multi-exon	FALSE	canonical	2	2	junction_4	12.2754836971909	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTTGTGAATGTGATTG	NA	False	NA	32	True	AATAAA	-24	NA	75358904	75361725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_75359204_75359382_75359466_75359667_75359751_75360297_75360728_75361225
ENSMUSG00000038217.14_75358905_75361725_2	chr11	+	1464	6	NNC	ENSMUSG00000038217.14	novel	1112	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	14.7295621116176	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTTGTGAATGTGATTG	NA	False	NA	32	True	AATAAA	-24	NA	75358904	75361725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_75359204_75359382_75359466_75359667_75359751_75360297_75360858_75360882_75360927_75361330
ENSMUSG00000038217.14_75358905_75361725_3	chr11	+	1893	4	ISM	ENSMUSG00000038217.14	ENSMUST00000108435.2	1112	5	0	0	0	0	intron_retention	FALSE	canonical	3	27	junction_1	3.09120616516523	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTTGTGAATGTGATTG	NA	False	NA	32	True	AATAAA	-24	NA	75358904	75361725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_75359204_75359382_75359466_75359667_75359751_75360297
ENSMUSG00000038225.16_47005104_47031549_1	chr8	-	1397	13	NIC	ENSMUSG00000038225.16	novel	3943	14	NA	NA	14099	23525	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	125	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGACTCCAAACTCGCGCC	NA	False	NA	NA	False	NA	NA	NA	47031549	47005103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
ENSMUSG00000038225.16_47005104_47031669_1	chr8	-	1517	13	NIC	ENSMUSG00000038225.16	novel	3943	14	NA	NA	13979	23525	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1025	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGACTCCAAACTCGCGCC	NA	False	NA	NA	False	NA	NA	NA	47031669	47005103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
ENSMUSG00000038235.5_171265147_171291578_1	chr1	+	1863	9	NNC	ENSMUSG00000038235.5	novel	2518	10	NA	NA	0	365	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	106.999707943527	758	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTTTTGTTGAACATG	NA	False	NA	15	True	AATAAA	-17	NA	171265146	171291578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_171265270_171287930_171288000_171288105_171288214_171288396_171288544_171288768_171288975_171289130_171289234_171289372_171289481_171290456_171290504_171290626
ENSMUSG00000038239.12_44988038_44988390_1	chr7	+	198	2	ISM	ENSMUSG00000038239.12	ENSMUST00000085351.7	2411	6	3324	8	3267	5	3prime_fragment	FALSE	canonical	2	4	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGAAACAGCAGTGTCCCG	1124	False	NA	NA	False	AATAAA	-8	NA	44988037	44988390	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_44988150_44988304
ENSMUSG00000038240.14_43097596_43316605_1	chr10	+	2020	8	FSM	ENSMUSG00000038240.14	ENSMUST00000095725.11	2127	8	114	-7	0	7	multi-exon	FALSE	canonical	3	61	junction_4	6.25316246521123	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGCCTTTCTTTCTTA	NA	False	NA	NA	False	ATTAAA	-35	NA	43097595	43316605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_43098057_43174794_43174930_43221523_43221723_43248130_43248206_43269866_43270041_43271556_43271689_43289510_43289544_43315794
ENSMUSG00000038252.14_125144970_125148053_1	chr6	-	1134	7	ISM	ENSMUSG00000038252.14	ENSMUST00000043848.11	4629	32	20611	0	0	0	3prime_fragment	TRUE	canonical	3	638	junction_5	33.9153357642232	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	NA	False	NA	-9	True	AATAAA	-20	NA	125148053	125144969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878
ENSMUSG00000038260.11_44952782_44954799_1	chr7	-	734	5	ISM	ENSMUSG00000038260.11	ENSMUST00000211743.2	3673	23	28281	0	0	0	3prime_fragment	FALSE	canonical	3	139	junction_4	15.2151240547029	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCGCACATGCTTGGCT	NA	False	NA	-10	True	AATAAA	-15	NA	44954799	44952781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_44953117_44954032_44954139_44954218_44954292_44954371_44954505_44954712
ENSMUSG00000038260.11_44952782_44954799_2	chr7	-	750	5	FSM	ENSMUSG00000038260.11	ENSMUST00000210311.2	498	5	-33	-219	0	0	multi-exon	FALSE	canonical	2	4	junction_4	72.5857251806442	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCGCACATGCTTGGCT	NA	False	NA	-10	True	AATAAA	-15	NA	44954799	44952781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44953117_44954032_44954139_44954218_44954292_44954371_44954505_44954696
ENSMUSG00000038274.14_6107972_6108303_1	chr19	+	91	2	FSM	ENSMUSG00000038274.14	ENSMUST00000236021.2	370	2	-12	291	0	-291	multi-exon	FALSE	canonical	3	11442	junction_1	0	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACTACACACCCTCGAGG	1080	False	NA	NA	False	NA	NA	NA	6107971	6108303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6108032_6108272
ENSMUSG00000038274.14_6107984_6109549_1	chr19	+	499	5	NNC	ENSMUSG00000038274.14	novel	613	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6935.97763026237	66202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1092	False	NA	4	True	AATAAA	-16	NA	6107983	6109549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_6108032_6108275_6108356_6108457_6108603_6109173_6109241_6109390
ENSMUSG00000038274.14_6107984_6109549_2	chr19	+	495	5	NNC	ENSMUSG00000038274.14	novel	613	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6935.97763026237	25438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1092	False	NA	4	True	AATAAA	-16	NA	6107983	6109549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_6108032_6108275_6108356_6108457_6108603_6109173_6109243_6109396
ENSMUSG00000038274.14_6107984_6109549_3	chr19	+	489	5	NNC	ENSMUSG00000038274.14	novel	613	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6211.55483755879	60678	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1092	False	NA	4	True	AATAAA	-16	NA	6107983	6109549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_6108032_6108286_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUSG00000038274.14_6107984_6109549_4	chr19	+	488	5	NNC	ENSMUSG00000038274.14	novel	613	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6935.97763026237	24404	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1092	False	NA	4	True	AATAAA	-16	NA	6107983	6109549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_6108032_6108275_6108356_6108457_6108603_6109173_6109230_6109390
ENSMUSG00000038274.14_6107984_6109549_5	chr19	+	605	4	NIC	ENSMUSG00000038274.14	novel	613	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	11442	junction_1	1225.19776181462	37894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1092	False	NA	4	True	AATAAA	-16	NA	6107983	6109549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_6108032_6108272_6108603_6109173_6109230_6109378
ENSMUSG00000038274.14_6107984_6109549_6	chr19	+	494	5	NNC	ENSMUSG00000038274.14	novel	613	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5802.4913345476	85489	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1092	False	NA	4	True	AATAAA	-16	NA	6107983	6109549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_6108032_6108272_6108356_6108466_6108603_6109173_6109230_6109378
ENSMUSG00000038274.14_6107984_6109549_7	chr19	+	482	5	NNC	ENSMUSG00000038274.14	novel	613	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6935.97763026237	5939	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1092	False	NA	4	True	AATAAA	-16	NA	6107983	6109549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_6108032_6108275_6108356_6108457_6108603_6109173_6109230_6109396
ENSMUSG00000038274.14_6107984_6109549_8	chr19	+	481	5	NNC	ENSMUSG00000038274.14	novel	613	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5802.4913345476	24718	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1092	False	NA	4	True	AATAAA	-16	NA	6107983	6109549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_6108032_6108272_6108356_6108479_6108603_6109173_6109230_6109378
ENSMUSG00000038274.14_6107984_6109549_9	chr19	+	490	5	NNC	ENSMUSG00000038274.14	novel	613	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6211.55483755879	77786	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1092	False	NA	4	True	AATAAA	-16	NA	6107983	6109549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_6108019_6108272_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUSG00000038286.12_34221615_34258057_1	chr13	+	1327	7	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	73.9316501160963	1016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTCCTGTTTGCTA	NA	False	NA	15	True	AATAAA	-17	NA	34221614	34258057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_34221862_34228406_34228511_34230768_34230936_34234263_34234418_34244416_34244549_34247892_34248017_34257658
ENSMUSG00000038286.12_34221615_34258057_2	chr13	+	1051	6	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_2	72.3972375163583	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTCCTGTTTGCTA	NA	False	NA	15	True	AATAAA	-17	NA	34221614	34258057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_34221753_34228406_34228511_34234263_34234418_34244416_34244549_34247892_34248017_34257658
ENSMUSG00000038286.12_34221615_34258057_3	chr13	+	1094	6	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_5	69.9828550432176	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTCCTGTTTGCTA	NA	False	NA	15	True	AATAAA	-17	NA	34221614	34258057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416_34244549_34257658
ENSMUSG00000038286.12_34221622_34228688_1	chr13	+	413	2	ISM	ENSMUSG00000038286.12	ENSMUST00000221124.2	2009	5	0	17181	0	-5618	5prime_fragment	FALSE	canonical	3	167	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTTCTTACTCTTTTAC	NA	False	NA	NA	False	AGTAAA	-16	NA	34221621	34228688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_34221753_34228406
ENSMUSG00000038290.16_74816649_74820374_1	chr11	+	737	2	ISM	ENSMUSG00000038290.16	ENSMUST00000045281.13	5848	19	0	234900	0	-62658	5prime_fragment	FALSE	canonical	3	122	junction_1	0	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGGAAAAAAGATTGAAAAGG	NA	False	NA	12	True	NA	NA	NA	74816648	74820374	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_74816830_74819818
ENSMUSG00000038292.15_44833048_44839559_1	chr7	-	961	8	NIC	ENSMUSG00000038292.15	novel	2262	20	NA	NA	-69	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_4	17.2129519341022	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACAGGATGATTTCCTC	9336	False	NA	-4	True	NA	NA	NA	44839559	44833047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44837565_44837722_44838764_44838825_44839060_44839118_44839373
ENSMUSG00000038299.17_32970364_32999086_1	chr18	+	2808	23	FSM	ENSMUSG00000038299.17	ENSMUST00000053663.11	4455	23	86	1561	0	-367	multi-exon	FALSE	canonical	3	587	junction_7	67.2070318044693	774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGTGCCAAGTGTGCTG	9050	False	NA	13	True	AATAAA	-24	NA	32970363	32999086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
ENSMUSG00000038299.17_32970364_32999453_1	chr18	+	3175	23	FSM	ENSMUSG00000038299.17	ENSMUST00000053663.11	4455	23	86	1194	0	0	multi-exon	FALSE	canonical	3	587	junction_7	67.2070318044693	896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGGGTTCTTTTTTTCT	9050	False	NA	14	True	ATTAAA	-7	NA	32970363	32999453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
ENSMUSG00000038299.17_32970364_32999453_2	chr18	+	3140	24	NNC	ENSMUSG00000038299.17	novel	2906	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	158.489013770111	887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGGGTTCTTTTTTTCT	9050	False	NA	14	True	ATTAAA	-7	NA	32970363	32999453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905_32999190_32999224
ENSMUSG00000038302.15_42188581_42354411_1	chr10	-	2363	13	FSM	ENSMUSG00000038302.15	ENSMUST00000041024.15	2513	13	150	0	0	0	multi-exon	FALSE	canonical	3	47	junction_11	7.72801541291309	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	1	True	AATAAA	-18	NA	42354411	42188580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42354258
ENSMUSG00000038319.15_24524587_24527292_1	chr5	-	1275	4	FSM	ENSMUSG00000038319.15	ENSMUST00000129246.2	741	4	-40	-494	-40	0	multi-exon	FALSE	canonical	3	20	junction_1	4.64279609239471	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCACCTGCTGTATCTC	NA	False	NA	-6	True	NA	NA	NA	24527292	24524586	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_24525148_24526242_24526421_24526633_24526821_24526943
ENSMUSG00000038319.15_24524587_24527292_2	chr5	-	1097	3	NIC	ENSMUSG00000038319.15	novel	3193	11	NA	NA	-40	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	11.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCACCTGCTGTATCTC	NA	False	NA	-6	True	NA	NA	NA	24527292	24524586	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_24525148_24526633_24526821_24526943
ENSMUSG00000038335.14_74794642_74800168_1	chr11	+	2053	8	ISM	ENSMUSG00000038335.14	ENSMUST00000045807.14	3389	15	5738	0	-154	0	3prime_fragment	FALSE	canonical	3	655	junction_1	87.4470101938124	1491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGTCTGGATTCTAGTA	NA	False	NA	26	True	AATAAA	-18	NA	74794641	74800168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
ENSMUSG00000038335.14_74798999_74816503_1	chr11	+	1538	8	NIC	ENSMUSG00000038335.14	novel	769	5	NA	NA	2962	16335	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTGCGCACGCGCACAC	NA	False	NA	NA	False	NA	NA	NA	74798998	74816503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74816444
ENSMUSG00000038335.14_74799381_74816503_1	chr11	+	1156	8	NIC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	3344	16335	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTGCGCACGCGCACAC	NA	False	NA	NA	False	NA	NA	NA	74799380	74816503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74816444
ENSMUSG00000038344.15_161571913_161612450_2	chrX	-	2673	5	ISM	ENSMUSG00000038344.15	ENSMUST00000041370.11	3862	10	0	9998	0	0	5prime_fragment	FALSE	canonical	3	191	junction_2	21.2132034355964	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTATGTCTCATCTCCAA	NA	False	NA	-6	True	AATAAA	-17	NA	161612450	161571912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_161573803_161580635_161580807_161590480_161590573_161594287_161594592_161612234
ENSMUSG00000038347.16_13936698_13981665_1	chr17	-	1417	3	FSM	ENSMUSG00000038347.16	ENSMUST00000148430.2	1839	3	422	0	-1	0	multi-exon	FALSE	canonical	1	1	junction_2	1	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTTGGCCTGGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	13981665	13936697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_13937896_13948183_13948285_13981547
ENSMUSG00000038354.14_96592304_96598350_1	chr3	+	644	5	ISM	ENSMUSG00000038354.14	ENSMUST00000122960.6	3295	14	14661	-25	4895	2	3prime_fragment	FALSE	canonical	3	58	junction_4	19.7294196569489	242	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTTGTGGTTTTTGTC	NA	False	NA	18	True	AATAAA	-18	NA	96592303	96598350	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_96592491_96596461_96596552_96596760_96596827_96597507_96597613_96598154
ENSMUSG00000038365.9_13957803_13972695_1	chr8	+	583	5	NNC	ENSMUSG00000038365.9	novel	2012	10	NA	NA	0	-8985	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	48.9815016103018	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCCCTACTTTGTGAGTCG	NA	False	NA	NA	False	ATTAAA	-4	NA	13957802	13972695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13972465
ENSMUSG00000038366.16_97690498_97727187_1	chr11	+	1030	7	FSM	ENSMUSG00000038366.16	ENSMUST00000043843.12	3540	7	107	2403	0	156	multi-exon	FALSE	canonical	3	479	junction_6	89.534754270184	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCGCCCCTCCAGCTTAT	4563	False	NA	NA	False	NA	NA	NA	97690497	97727187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_97690689_97697650_97697746_97706523_97706609_97715667_97715776_97724371_97724529_97724909_97725014_97726897
ENSMUSG00000038366.16_97690498_97729590_1	chr11	+	3433	7	FSM	ENSMUSG00000038366.16	ENSMUST00000043843.12	3540	7	107	0	0	0	multi-exon	FALSE	canonical	3	479	junction_6	89.534754270184	1378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTAGGCTTCTTCCTCTTTG	4563	False	NA	10	True	AATAAA	-21	NA	97690497	97729590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_97690689_97697650_97697746_97706523_97706609_97715667_97715776_97724371_97724529_97724909_97725014_97726897
ENSMUSG00000038368.17_88012867_88115458_1	chr4	+	1738	11	ISM	ENSMUSG00000038368.17	ENSMUST00000097992.10	5791	44	0	213785	0	14177	5prime_fragment	FALSE	canonical	3	105	junction_5	16.9292646030476	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGAATTCAGTATATTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	88012866	88115458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_88012913_88039506_88039596_88042824_88042900_88047134_88047290_88072873_88072979_88088143_88088246_88092849_88093055_88096318_88096526_88100820_88100909_88104116_88104320_88114995
ENSMUSG00000038372.15_32003562_32101665_1	chr13	-	532	3	ISM	ENSMUSG00000038372.15	ENSMUST00000041859.9	1713	11	421058	0	309559	0	3prime_fragment	FALSE	canonical	3	82	junction_1	6.5	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGTTTGCTGTGTATGTT	NA	False	NA	-4	True	ATTAAA	-26	NA	32101665	32003561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_32003962_32004124_32004194_32101602
ENSMUSG00000038372.15_32003562_32522609_1	chr13	-	1599	11	FSM	ENSMUSG00000038372.15	ENSMUST00000041859.9	1713	11	114	0	-2	0	multi-exon	FALSE	canonical	3	65	junction_5	9.43186089804128	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGTTTGCTGTGTATGTT	NA	False	NA	-4	True	ATTAAA	-26	NA	32522609	32003561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_32003962_32004124_32004194_32101602_32101700_32124466_32124586_32284339_32284468_32310982_32311088_32311889_32312083_32409117_32409228_32411197_32411286_32418335_32418381_32522364
ENSMUSG00000038374.11_96537256_96539216_1	chr3	+	713	6	FSM	ENSMUSG00000038374.11	ENSMUST00000196456.5	2604	6	0	1891	0	0	multi-exon	FALSE	canonical	3	2213	junction_2	872.428931202995	56495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATTACTTTACTGTTC	8642	False	NA	16	True	AATAAA	-20	NA	96537255	96539216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96537345_96537617_96537678_96537792_96537871_96538181_96538319_96538747_96538885_96539004
ENSMUSG00000038379.16_83716743_83717976_1	chr9	+	223	2	FSM	ENSMUSG00000038379.16	ENSMUST00000189727.2	1791	2	-44	1612	0	-1612	multi-exon	FALSE	canonical	3	232	junction_1	0	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGAGTTTTTTCTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	83716742	83717976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_83716813_83717823
ENSMUSG00000038379.16_83716743_83727063_1	chr9	+	1841	8	ISM	ENSMUSG00000038379.16	ENSMUST00000186277.2	999	9	-51	-583	0	583	intron_retention	FALSE	canonical	3	220	junction_5	14.2427926635594	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAACGTTAATTG	NA	False	NA	NA	False	NA	NA	NA	83716742	83727063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099
ENSMUSG00000038383.17_155176460_155199339_1	chr2	-	593	5	NNC	ENSMUSG00000038383.17	novel	3057	4	NA	NA	0	-1894	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	77.2625394353564	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAATCTGTTTTCCTTCA	NA	False	NA	NA	False	AGTAAA	-18	NA	155199339	155176459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_155176711_155177280_155177344_155178601_155178662_155187567_155187633_155199185
ENSMUSG00000038388.15_50121613_50175404_1	chr6	+	1802	12	NNC	ENSMUSG00000038388.15	novel	616	3	NA	NA	33773	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	331.464643540386	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCTGCGCATCAAGGCAT	NA	False	NA	NA	False	NA	NA	NA	50121612	50175404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_50121699_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
ENSMUSG00000038393.15_96465629_96469182_1	chr3	+	2454	8	FSM	ENSMUSG00000038393.15	ENSMUST00000074519.13	2827	8	356	17	353	8	multi-exon	FALSE	canonical	3	279	junction_1	78.2390371795021	631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTTTCTTGTCTATGA	NA	False	NA	28	True	AATAAA	-23	NA	96465628	96469182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96465802_96466204_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
ENSMUSG00000038398.9_13835635_13836431_1	chr8	+	535	2	FSM	ENSMUSG00000038398.9	ENSMUST00000211643.2	1131	2	-10	606	0	-606	multi-exon	FALSE	canonical	3	312	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGACTGCATCCCTTACAC	NA	False	NA	NA	False	AATAAA	-18	NA	13835634	13836431	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_13835885_13836146
ENSMUSG00000038398.9_13835635_13836758_1	chr8	+	862	2	FSM	ENSMUSG00000038398.9	ENSMUST00000211643.2	1131	2	-10	279	0	-279	multi-exon	FALSE	canonical	3	312	junction_1	0	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGTATCCTTTGAAAAACC	NA	False	NA	NA	False	AATAAA	-17	NA	13835634	13836758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_13835885_13836146
ENSMUSG00000038398.9_13835635_13848723_1	chr8	+	1561	9	NNC	ENSMUSG00000038398.9	novel	2057	9	NA	NA	0	-470	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	117.63018054479	1208	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGTTTTTTGTTTTTGTT	NA	False	NA	12	True	AATAAA	-25	NA	13835634	13848723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_13835885_13836146_13836254_13837364_13837472_13841881_13841981_13842105_13842211_13845439_13845496_13845583_13845740_13846458_13846593_13848176
ENSMUSG00000038398.9_13835635_13848723_2	chr8	+	1567	9	FSM	ENSMUSG00000038398.9	ENSMUST00000043767.9	2057	9	20	470	0	-470	multi-exon	FALSE	canonical	3	271	junction_6	38.5873603010105	1228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGTTTTTTGTTTTTGTT	NA	False	NA	12	True	AATAAA	-25	NA	13835634	13848723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_13835885_13836146_13836254_13837364_13837472_13841881_13841981_13842099_13842211_13845439_13845496_13845583_13845740_13846458_13846593_13848176
ENSMUSG00000038398.9_13835979_13848723_1	chr8	+	1485	8	ISM	ENSMUSG00000038398.9	ENSMUST00000043767.9	2057	9	364	470	334	-470	3prime_fragment	FALSE	canonical	3	271	junction_5	39.9571198733271	646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGTTTTTTGTTTTTGTT	NA	False	NA	12	True	AATAAA	-25	NA	13835978	13848723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_13836254_13837364_13837472_13841881_13841981_13842099_13842211_13845439_13845496_13845583_13845740_13846458_13846593_13848176
ENSMUSG00000038406.18_44652372_44655962_1	chr7	-	1088	5	ISM	ENSMUSG00000038406.18	ENSMUST00000211735.2	4209	11	7866	0	7023	0	3prime_fragment	FALSE	canonical	3	212	junction_4	19.904459299363	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGCGTAGTGGTGTACC	9301	False	NA	-6	True	ATTAAA	-17	NA	44655962	44652371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_44652796_44652920_44653050_44654828_44655048_44655264_44655348_44655729
ENSMUSG00000038412.9_121677629_121686678_1	chr9	-	1460	5	NNC	ENSMUSG00000038412.9	novel	2232	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	936.441502444226	17455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCAGATGTCTTGTTTTT	NA	False	NA	-3	True	ATTAAA	-13	NA	121686678	121677628	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_121678155_121678176_121678756_121679253_121679389_121681556_121681676_121686577
ENSMUSG00000038412.9_121678604_121686628_1	chr9	-	609	5	NIC	ENSMUSG00000038412.9	novel	605	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_4	1100.26050892505	1297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACGGTATTGAATATTG	NA	False	NA	-25	True	AATAAA	-20	NA	121686628	121678603	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_121678756_121679253_121679389_121681556_121681676_121685786_121685939_121686577
ENSMUSG00000038412.9_121678604_121686628_2	chr9	-	447	4	NNC	ENSMUSG00000038412.9	novel	605	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1003.87261254714	4024	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACGGTATTGAATATTG	NA	False	NA	-25	True	AATAAA	-20	NA	121686628	121678603	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_121678756_121679253_121679389_121681566_121681676_121686577
ENSMUSG00000038412.9_121678604_121686678_1	chr9	-	1005	3	FSM	ENSMUSG00000038412.9	ENSMUST00000215007.2	1980	3	0	975	0	0	multi-exon	FALSE	canonical	3	2040	junction_2	90	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACGGTATTGAATATTG	NA	False	NA	-25	True	AATAAA	-20	NA	121686678	121678603	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_121679389_121681556_121681676_121686577
ENSMUSG00000038412.9_121678604_121686678_2	chr9	-	493	4	NNC	ENSMUSG00000038412.9	novel	605	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1043.93497030333	11339	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACGGTATTGAATATTG	NA	False	NA	-25	True	AATAAA	-20	NA	121686678	121678603	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_121678756_121679253_121679389_121681556_121681662_121686577
ENSMUSG00000038417.5_41064168_41143811_1	chr10	-	2428	17	ISM	ENSMUSG00000038417.5	ENSMUST00000043814.5	3282	23	35445	0	35445	0	3prime_fragment	FALSE	canonical	3	342	junction_4	28.278124827329	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGTTTTGCTTCTGACT	NA	False	NA	-25	True	AATAAA	-17	NA	41143811	41064167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_41064696_41096894_41096982_41102917_41103001_41104102_41104299_41106002_41106087_41108102_41108251_41109547_41109607_41116500_41116640_41127712_41127880_41129635_41129785_41130839_41130886_41132416_41132534_41134010_41134145_41139064_41139163_41139880_41140044_41141381_41141483_41143682
ENSMUSG00000038425.19_70656091_70663341_1	chr18	-	781	4	NIC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	-2	-14331	combination_of_known_splicesites	FALSE	canonical	3	116	junction_3	81.3893249893512	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGCAAGTACTTTTTCC	NA	False	NA	NA	False	AATAAA	-15	NA	70663341	70656090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_-_70656471_70658446_70658600_70659627_70659793_70663258
ENSMUSG00000038446.9_40707617_40717785_1	chr10	-	2182	5	ISM	ENSMUSG00000038446.9	ENSMUST00000044166.9	3534	15	41522	0	4148	0	3prime_fragment	FALSE	canonical	3	189	junction_2	7.79021822544144	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGAGTTCATTGTG	NA	False	NA	-3	True	AATAAA	-19	NA	40717785	40707616	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695
ENSMUSG00000038446.9_40709090_40717785_1	chr10	-	709	5	ISM	ENSMUSG00000038446.9	ENSMUST00000044166.9	3534	15	41522	1473	4148	-1473	3prime_fragment	FALSE	canonical	3	189	junction_2	7.79021822544144	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGATTTATAGGTAATCT	NA	False	NA	NA	False	ATTAAA	-16	NA	40717785	40709089	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695
ENSMUSG00000038446.9_40709090_40759091_1	chr10	-	1845	15	FSM	ENSMUSG00000038446.9	ENSMUST00000044166.9	3534	15	216	1473	-3	-1473	multi-exon	FALSE	canonical	3	163	junction_10	18.6027208894236	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGATTTATAGGTAATCT	NA	False	NA	NA	False	ATTAAA	-16	NA	40759091	40709089	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695_40717812_40719037_40719140_40720956_40721003_40723125_40723201_40723919_40724060_40725740_40725838_40726925_40727066_40728492_40728577_40733542_40733673_40743819_40743907_40758882
ENSMUSG00000038451.14_124785848_124787582_1	chr6	+	1182	3	NNC	ENSMUSG00000038451.14	novel	1219	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	9.5	173	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTTCATTATTGTTTTT	NA	False	NA	19	True	AGTAAA	-22	NA	124785847	124787582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_124785994_124786189_124786875_124787231
ENSMUSG00000038451.14_124785848_124787582_2	chr6	+	1165	3	FSM	ENSMUSG00000038451.14	ENSMUST00000143040.8	882	3	0	-283	0	0	multi-exon	FALSE	canonical	3	7	junction_1	13	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTTCATTATTGTTTTT	NA	False	NA	19	True	AGTAAA	-22	NA	124785847	124787582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_124785919_124786189_124786933_124787231
ENSMUSG00000038459.11_83758564_83800605_1	chr7	-	1742	3	FSM	ENSMUSG00000038459.11	ENSMUST00000117085.2	2238	3	496	0	273	0	multi-exon	FALSE	canonical	3	1379	junction_1	80.5	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGTGGGCTTATGTGCTCC	NA	False	NA	-7	True	AATAAA	-18	NA	83800605	83758563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_83760010_83763458_83763639_83800489
ENSMUSG00000038462.4_30724435_30729345_1	chr13	-	1219	2	FSM	ENSMUSG00000038462.4	ENSMUST00000042834.4	1363	2	0	144	0	-144	multi-exon	FALSE	canonical	3	2063	junction_1	0	2914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTGTTCTCATCTAAATT	NA	False	NA	-15	True	AATAAA	-19	NA	30729345	30724434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_30725325_30729016
ENSMUSG00000038467.16_154499067_154536201_1	chr2	+	983	5	FSM	ENSMUSG00000038467.16	ENSMUST00000044277.10	1616	5	129	504	129	0	multi-exon	FALSE	canonical	3	34	junction_1	13.5738719604982	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCGCTAAGCCCACTGCT	NA	False	NA	25	True	AATAAA	-33	NA	154499066	154536201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_154499292_154531437_154531616_154533129_154533245_154534468_154534596_154535863
ENSMUSG00000038482.12_13388791_13428180_1	chr8	+	2203	12	FSM	ENSMUSG00000038482.12	ENSMUST00000209885.2	2511	12	40	268	0	-262	multi-exon	FALSE	canonical	3	547	junction_1	150.974903502547	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTCAATCATTTTTAATA	2143	False	NA	NA	False	ATTAAA	-36	NA	13388790	13428180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_13388807_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ENSMUSG00000038489.9_141053025_141055045_1	chr7	-	386	2	NNC	ENSMUSG00000038489.9	novel	1650	2	NA	NA	0	-1252	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	15380	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTCCATGTCCATGTCT	8000	False	NA	-13	True	AGTAAA	-37	NA	141055045	141053024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_141053318_141054952
ENSMUSG00000038489.9_141053025_141055045_2	chr7	-	392	2	NNC	ENSMUSG00000038489.9	novel	1650	2	NA	NA	0	-1252	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	17210	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTCCATGTCCATGTCT	8000	False	NA	-13	True	AGTAAA	-37	NA	141055045	141053024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_141053318_141054946
ENSMUSG00000038489.9_141053025_141055273_1	chr7	-	365	2	NNC	ENSMUSG00000038489.9	novel	1650	2	NA	NA	-228	-1252	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	0	997	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTCCATGTCCATGTCT	7772	False	NA	-13	True	AGTAAA	-37	NA	141055273	141053024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_141053318_141055201
ENSMUSG00000038500.16_36283433_36290191_1	chr17	-	1790	4	FSM	ENSMUSG00000038500.16	ENSMUST00000055454.14	2727	4	937	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	38.4216374224502	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	False	NA	-1	True	AATAAA	-16	NA	36290191	36283432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36284696_36285414_36285706_36289272_36289336_36290018
ENSMUSG00000038500.16_36283433_36290191_2	chr17	-	1861	5	NIC	ENSMUSG00000038500.16	novel	2727	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	22.0056810846654	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	False	NA	-1	True	AATAAA	-16	NA	36290191	36283432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602_36289674_36290018
ENSMUSG00000038500.16_36291017_36299759_1	chr17	-	1979	12	NIC	ENSMUSG00000038500.16	novel	2727	4	NA	NA	-8631	-1595	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	1366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCCCCGGGGCAGCCCCC	NA	False	NA	NA	False	NA	NA	NA	36299759	36291016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_36291140_36291508_36291675_36291953_36292091_36292198_36292351_36292449_36292522_36293416_36293625_36293838_36293935_36294286_36294482_36298356_36298536_36298616_36298780_36299004_36299146_36299412
ENSMUSG00000038502.18_44512493_44513091_1	chr7	-	508	2	NNC	ENSMUSG00000038502.18	novel	631	3	NA	NA	306	0	intron_retention	FALSE	non_canonical	0	0	junction_1	0	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCTGTCCCTCCCTGCT	NA	False	NA	-10	True	AATAAA	-13	NA	44513091	44512492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_44512869_44512959
ENSMUSG00000038503.16_83541354_83548384_1	chr7	+	1990	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	146	2356	144	1096	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	6199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGATAGGTATATTC	NA	False	NA	20	True	AATAAA	-15	NA	83541353	83548384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
ENSMUSG00000038503.16_83541470_83547148_1	chr7	+	638	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	262	3592	-68	0	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATCCCAAACCACGTGCT	NA	False	NA	NA	False	AATAAA	-32	NA	83541469	83547148	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
ENSMUSG00000038503.16_83541470_83548384_1	chr7	+	1874	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	262	2356	-68	1096	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	6169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGATAGGTATATTC	NA	False	NA	20	True	AATAAA	-15	NA	83541469	83548384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
ENSMUSG00000038508.8_71082044_71083497_1	chr8	-	938	2	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	1248	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGCGTCTCAGTGACCTT	2263	False	NA	-7	True	AATAAA	-17	NA	71083497	71082043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_71082825_71083340
ENSMUSG00000038510.13_40099423_40122999_1	chr10	-	1257	10	NNC	ENSMUSG00000038510.13	novel	1296	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	386.188785152777	3307	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATGTCACAGTGTGG	6590	False	NA	42	True	TTTAAA	-17	NA	40122999	40099422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_40099911_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122948
ENSMUSG00000038510.13_40099423_40122999_4	chr10	-	1241	9	NNC	ENSMUSG00000038510.13	novel	1296	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	403.554519241205	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATGTCACAGTGTGG	6590	False	NA	42	True	TTTAAA	-17	NA	40122999	40099422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40120564_40120714_40122948
ENSMUSG00000038510.13_40099423_40122999_5	chr10	-	1254	10	NNC	ENSMUSG00000038510.13	novel	1296	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	386.188785152777	2609	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATGTCACAGTGTGG	6590	False	NA	42	True	TTTAAA	-17	NA	40122999	40099422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_40099908_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122948
ENSMUSG00000038510.13_40099423_40122999_6	chr10	-	1185	8	FSM	ENSMUSG00000038510.13	ENSMUST00000181995.8	799	8	0	-386	0	0	multi-exon	FALSE	canonical	0	0	junction_6	422.287550740256	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATGTCACAGTGTGG	6590	False	NA	42	True	TTTAAA	-17	NA	40122999	40099422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40120580_40120714_40122948
ENSMUSG00000038510.13_40099423_40122999_8	chr10	-	1225	9	NIC	ENSMUSG00000038510.13	novel	1296	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_7	393.075374451262	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATGTCACAGTGTGG	6590	False	NA	42	True	TTTAAA	-17	NA	40122999	40099422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40120580_40120714_40122948
ENSMUSG00000038510.13_40099423_40122999_9	chr10	-	1258	10	NNC	ENSMUSG00000038510.13	novel	1296	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	385.507169554313	2607	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATGTCACAGTGTGG	6590	False	NA	42	True	TTTAAA	-17	NA	40122999	40099422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122953
ENSMUSG00000038510.13_40099679_40122999_2	chr10	-	1001	10	NNC	ENSMUSG00000038510.13	novel	1296	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	386.188785152777	981	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTTCGGTTTCCTGAT	6590	False	NA	-4	True	ACTAAA	-18	NA	40122999	40099678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_40099911_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122948
ENSMUSG00000038510.13_40099679_40122999_5	chr10	-	969	9	NIC	ENSMUSG00000038510.13	novel	1296	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_7	393.075374451262	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTTCGGTTTCCTGAT	6590	False	NA	-4	True	ACTAAA	-18	NA	40122999	40099678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40120580_40120714_40122948
ENSMUSG00000038510.13_40099679_40122999_6	chr10	-	929	8	FSM	ENSMUSG00000038510.13	ENSMUST00000181995.8	799	8	0	-130	0	0	multi-exon	FALSE	canonical	0	0	junction_6	422.287550740256	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTTCGGTTTCCTGAT	6590	False	NA	-4	True	ACTAAA	-18	NA	40122999	40099678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40120580_40120714_40122948
ENSMUSG00000038515.11_13222595_13225338_1	chr8	-	1218	4	NNC	ENSMUSG00000038515.11	novel	3013	8	NA	NA	4037	-573	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3179	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTCCCACTAGATGTGT	NA	False	NA	NA	False	NA	NA	NA	13225338	13222594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_13222661_13223626_13223694_13223779_13223951_13224424
ENSMUSG00000038515.11_13222595_13225338_2	chr8	-	1219	4	NNC	ENSMUSG00000038515.11	novel	3013	8	NA	NA	4037	-573	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3169	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTCCCACTAGATGTGT	NA	False	NA	NA	False	NA	NA	NA	13225338	13222594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_13222661_13223626_13223694_13223779_13223946_13224418
ENSMUSG00000038515.11_13226922_13250598_1	chr8	-	1223	8	NNC	ENSMUSG00000038515.11	novel	3013	8	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	133.413887231137	1076	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTCTCCATTTTTTCCTA	3659	False	NA	-21	True	TTTAAA	-18	NA	13250598	13226921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_13227143_13229322_13229509_13229582_13229756_13236882_13236980_13239622_13239748_13242049_13242209_13250048_13250201_13250488
ENSMUSG00000038520.16_44490457_44498499_1	chr7	-	2340	17	FSM	ENSMUSG00000038520.16	ENSMUST00000047085.16	8750	17	0	6410	0	0	multi-exon	FALSE	canonical	3	189	junction_4	26.4359485360371	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCGCTGGCTGGCATCAG	7703	False	NA	-11	True	AATAAA	-14	NA	44498499	44490456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44490845_44490966_44491054_44491406_44491524_44491626_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
ENSMUSG00000038523.11_154386319_154400774_1	chr2	+	1817	13	NIC	ENSMUSG00000038523.11	novel	683	3	NA	NA	-2686	8851	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	175	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCTGCGGGTTGCGGTTA	NA	False	NA	NA	False	NA	NA	NA	154386318	154400774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_154387088_154387174_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388801_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
ENSMUSG00000038523.11_154386319_154400774_2	chr2	+	1853	13	NNC	ENSMUSG00000038523.11	novel	683	3	NA	NA	-2686	8851	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	170	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCTGCGGGTTGCGGTTA	NA	False	NA	NA	False	NA	NA	NA	154386318	154400774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_154387088_154387174_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388837_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
ENSMUSG00000038523.11_154386965_154400774_1	chr2	+	1294	12	NNC	ENSMUSG00000038523.11	novel	683	3	NA	NA	-2040	8851	intron_retention	FALSE	non_canonical	0	0	junction_1	0	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCTGCGGGTTGCGGTTA	NA	False	NA	NA	False	NA	NA	NA	154386964	154400774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388837_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
ENSMUSG00000038525.17_21851015_21858714_1	chr5	+	844	4	ISM	ENSMUSG00000038525.17	ENSMUST00000095495.3	2700	5	-36	8892	0	1704	5prime_fragment	FALSE	canonical	3	401	junction_2	12.2565175405668	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGATGTGACA	NA	False	NA	NA	False	NA	NA	NA	21851014	21858714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373
ENSMUSG00000038525.17_21851015_21862307_1	chr5	+	1077	5	NNC	ENSMUSG00000038525.17	novel	2700	5	NA	NA	0	-4307	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	180.301656953007	71	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATTCTCATTGCTATGT	NA	False	NA	NA	False	AATAAA	-15	NA	21851014	21862307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21861910
ENSMUSG00000038525.17_21851015_21866616_1	chr5	+	1007	6	FSM	ENSMUSG00000038525.17	ENSMUST00000072896.13	2221	6	138	1076	0	2	multi-exon	FALSE	canonical	3	325	junction_5	40.0679422980517	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGTTGCTCCTATTTTTAT	NA	False	NA	4	True	AATAAA	-14	NA	21851014	21866616	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
ENSMUSG00000038525.17_21851015_21866756_1	chr5	+	1147	6	FSM	ENSMUSG00000038525.17	ENSMUST00000072896.13	2221	6	138	936	0	142	multi-exon	FALSE	canonical	3	325	junction_5	40.0679422980517	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACGATGTTCAAAATTTTAG	NA	False	NA	NA	False	AATAAA	-25	NA	21851014	21866756	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
ENSMUSG00000038525.17_21851015_21867606_1	chr5	+	1997	6	FSM	ENSMUSG00000038525.17	ENSMUST00000072896.13	2221	6	138	86	0	0	multi-exon	FALSE	canonical	3	325	junction_5	40.0679422980517	1129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAATTTCTTCCCCCACTG	NA	False	NA	19	True	AATAAA	-21	NA	21851014	21867606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
ENSMUSG00000038527.10_124470072_124486343_1	chr6	+	1751	6	FSM	ENSMUSG00000038527.10	ENSMUST00000049124.10	3010	6	0	1259	0	-1259	multi-exon	TRUE	canonical	2	10	junction_3	3.13687742827162	325	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGTCACTGA	NA	False	NA	NA	False	NA	NA	NA	124470071	124486343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_124470190_124470773_124471003_124482189_124482380_124483850_124483953_124484048_124484124_124485306
ENSMUSG00000038533.16_154278415_154342794_1	chr2	+	617	2	ISM	ENSMUSG00000038533.16	ENSMUST00000099178.10	3247	9	11	25539	0	-3903	5prime_fragment	FALSE	canonical	3	587	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTAGGGCAACCCCTTGG	5317	False	NA	NA	False	NA	NA	NA	154278414	154342794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_154278557_154342319
ENSMUSG00000038534.20_96958063_96959730_1	chr11	+	1343	4	NNC	ENSMUSG00000038534.20	novel	3771	23	NA	NA	354	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	66.0504857413378	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGACCACTCATTGAA	NA	False	NA	22	True	AATAAA	-18	NA	96958062	96959730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_96958176_96958242_96958387_96958490_96958614_96958767
ENSMUSG00000038534.20_96958063_96959730_2	chr11	+	1326	4	ISM	ENSMUSG00000038534.20	ENSMUST00000143360.2	920	5	354	-633	354	0	3prime_fragment	FALSE	canonical	3	130	junction_3	12.5521135891752	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGACCACTCATTGAA	NA	False	NA	22	True	AATAAA	-18	NA	96958062	96959730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_96958176_96958259_96958387_96958490_96958614_96958767
ENSMUSG00000038544.15_59769637_59783866_1	chr4	-	3156	4	FSM	ENSMUSG00000038544.15	ENSMUST00000107526.8	1438	4	-58	-1660	0	0	multi-exon	FALSE	canonical	3	138	junction_3	91.8416511659546	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTACTGCATATGTTAA	-28	True	NA	NA	False	NA	NA	NA	59783866	59769636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59783727
ENSMUSG00000038544.15_59771297_59783866_1	chr4	-	1577	5	FSM	ENSMUSG00000038544.15	ENSMUST00000095063.11	3237	5	0	1660	0	0	multi-exon	FALSE	canonical	3	236	junction_4	41.7814252988095	610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTACTTTGTAAGGATCCT	-28	True	NA	-6	True	ATTAAA	-18	NA	59783866	59771296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59782253_59782335_59783727
ENSMUSG00000038544.15_59771666_59783866_1	chr4	-	1127	4	FSM	ENSMUSG00000038544.15	ENSMUST00000107526.8	1438	4	-58	369	0	-369	multi-exon	FALSE	canonical	3	138	junction_3	91.8416511659546	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTGACTAAATACTGTT	-28	True	NA	NA	False	AATAAA	-23	NA	59783866	59771665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59783727
ENSMUSG00000038544.15_59771666_59783866_2	chr4	-	1208	5	FSM	ENSMUSG00000038544.15	ENSMUST00000095063.11	3237	5	0	2029	0	-369	multi-exon	FALSE	canonical	3	236	junction_4	41.7814252988095	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTGACTAAATACTGTT	-28	True	NA	NA	False	AATAAA	-23	NA	59783866	59771665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59782253_59782335_59783727
ENSMUSG00000038545.14_46972713_46975290_1	chr17	+	1249	6	ISM	ENSMUSG00000038545.14	ENSMUST00000133393.8	4047	21	8894	0	0	0	3prime_fragment	TRUE	canonical	3	81	junction_1	10.2293694820355	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCTGTATGGGACTGCTA	NA	False	NA	19	True	AATAAA	-20	NA	46972712	46975290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_46972779_46972850_46973158_46973983_46974130_46974247_46974375_46974463_46974670_46974893
ENSMUSG00000038550.11_95785815_95789386_1	chr3	-	1034	5	NIC	ENSMUSG00000038550.11	novel	1939	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_4	78.2959130478724	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTTTTT	NA	False	NA	-1	True	ATTAAA	-15	NA	95789386	95785814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95789266
ENSMUSG00000038550.11_95785815_95789386_2	chr3	-	1133	6	NIC	ENSMUSG00000038550.11	novel	1939	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	72.7268863626101	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTTTTT	NA	False	NA	-1	True	ATTAAA	-15	NA	95789386	95785814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788592_95789266
ENSMUSG00000038550.11_95785815_95789517_1	chr3	-	965	5	FSM	ENSMUSG00000038550.11	ENSMUST00000161866.8	710	5	46	-301	0	0	multi-exon	FALSE	canonical	3	10	junction_4	75.7396857664461	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTTTTT	NA	False	NA	-1	True	ATTAAA	-15	NA	95789517	95785814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95789466
ENSMUSG00000038563.15_82297822_82308234_1	chr7	+	1055	5	NNC	ENSMUSG00000038563.15	novel	755	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	64.6935081750866	159	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTGGCCTGTGGCTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	82297821	82308234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_82297858_82298733_82298840_82301088_82301157_82307264_82307350_82307474
ENSMUSG00000038563.15_82412377_82427060_1	chr7	+	793	3	ISM	ENSMUSG00000038563.15	ENSMUST00000039881.4	3610	20	114528	0	92940	0	3prime_fragment	FALSE	canonical	3	118	junction_1	9	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCGTTTGTTTAATTAAT	NA	False	NA	38	True	AATAAA	-43	NA	82412376	82427060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_82412623_82421664_82421850_82426698
ENSMUSG00000038572.8_154078194_154082822_1	chr2	+	404	4	NNC	ENSMUSG00000038572.8	novel	1637	15	NA	NA	12532	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	20.6074420214316	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTGTCTGAGTTTGCTG	NA	False	NA	5	True	AATAAA	-15	NA	154078193	154082822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_154078303_154078677_154078742_154080747_154080828_154082671
ENSMUSG00000038607.13_59035231_59041888_1	chr4	+	1034	3	FSM	ENSMUSG00000038607.13	ENSMUST00000041160.13	1192	3	143	15	143	-15	multi-exon	FALSE	canonical	3	257	junction_2	16.5	816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCCATGACAGCAGTAGT	19	True	NA	20	True	AATAAA	-20	NA	59035230	59041888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_59035319_59039226_59039359_59041074
ENSMUSG00000038612.17_95567011_95568326_1	chr3	+	618	2	ISM	ENSMUSG00000038612.17	ENSMUST00000178686.2	858	4	843	-192	843	192	3prime_fragment	FALSE	canonical	3	754	junction_1	0	266	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCCCTGGAAGAGTCACT	7329	False	NA	34	True	AATAAA	-16	NA	95567010	95568326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_95567320_95568017
ENSMUSG00000038618.13_140795788_140798571_2	chr7	+	797	5	NIC	ENSMUSG00000038618.13	novel	1525	6	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	3	36	junction_2	126.772187407175	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	20	True	AATAAA	-17	NA	140795787	140798571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_140795854_140796633_140796765_140797798_140797931_140798002_140798082_140798182
ENSMUSG00000038619.13_95532304_95534308_1	chr3	+	433	2	FSM	ENSMUSG00000038619.13	ENSMUST00000197050.2	937	2	-33	537	0	-537	multi-exon	FALSE	canonical	3	538	junction_1	0	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAATTATGTGAATCTCTG	382	False	NA	NA	False	AGTAAA	-29	NA	95532303	95534308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95532488_95534059
ENSMUSG00000038619.13_95532304_95537803_1	chr3	+	520	4	NNC	ENSMUSG00000038619.13	novel	1130	4	NA	NA	0	-1610	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	18.7082869338697	64	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCATCTCCGATCTTCTC	382	False	NA	21	True	NA	NA	NA	95532303	95537803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_95532488_95535851_95536019_95536546_95536610_95537697
ENSMUSG00000038619.13_95532304_95537803_2	chr3	+	654	5	NNC	ENSMUSG00000038619.13	novel	1130	4	NA	NA	0	-1610	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	231.406568618957	425	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCATCTCCGATCTTCTC	382	False	NA	21	True	NA	NA	NA	95532303	95537803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_95532488_95534059_95534186_95535851_95536019_95536546_95536610_95537689
ENSMUSG00000038619.13_95532304_95537803_3	chr3	+	2262	3	FSM	ENSMUSG00000038619.13	ENSMUST00000037983.6	3845	3	-27	1610	0	-1610	multi-exon	FALSE	canonical	3	422	junction_2	58	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCATCTCCGATCTTCTC	382	False	NA	21	True	NA	NA	NA	95532303	95537803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95532488_95534059_95534186_95535851
ENSMUSG00000038619.13_95532304_95537803_4	chr3	+	659	5	NNC	ENSMUSG00000038619.13	novel	1130	4	NA	NA	0	-1610	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_4	230.317172612031	406	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCATCTCCGATCTTCTC	382	False	NA	21	True	NA	NA	NA	95532303	95537803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_95532488_95534059_95534186_95535851_95536019_95536546_95536610_95537684
ENSMUSG00000038619.13_95532304_95538795_1	chr3	+	530	4	FSM	ENSMUSG00000038619.13	ENSMUST00000058230.13	1130	4	-18	618	0	-618	multi-exon	FALSE	canonical	3	58	junction_3	204.491781959298	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTCGGGTCCTGTGCTGGC	382	False	NA	NA	False	GGGGCT	-24	NA	95532303	95538795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95532488_95534059_95534186_95535851_95536019_95538742
ENSMUSG00000038628.9_181506153_181510247_1	chr2	+	549	3	FSM	ENSMUSG00000038628.9	ENSMUST00000039551.9	2948	3	23	2376	0	2245	multi-exon	FALSE	canonical	3	712	junction_2	38.5	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATAAAGTCCTTGATGTA	8919	False	NA	NA	False	AATATA	-18	NA	181506152	181510247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_181506363_181507738_181507827_181509996
ENSMUSG00000038628.9_181506153_181510403_1	chr2	+	705	3	FSM	ENSMUSG00000038628.9	ENSMUST00000039551.9	2948	3	23	2220	0	-2220	multi-exon	FALSE	canonical	3	712	junction_2	38.5	3138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGGTTTTCTCTGTGTAG	8919	False	NA	17	True	AATAAA	-28	NA	181506152	181510403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_181506363_181507738_181507827_181509996
ENSMUSG00000038628.9_181506153_181511444_1	chr2	+	1746	3	FSM	ENSMUSG00000038628.9	ENSMUST00000039551.9	2948	3	23	1179	0	-1179	multi-exon	FALSE	canonical	3	712	junction_2	38.5	3554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGGCCTCAGTTCTTGT	8919	False	NA	5	True	ATTAAA	-18	NA	181506152	181511444	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_181506363_181507738_181507827_181509996
ENSMUSG00000038633.6_182103533_182109789_1	chr1	-	1733	3	NIC	ENSMUSG00000038633.6	novel	2048	3	NA	NA	0	-196	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	557	2090	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGCCTTAGTGGAATTTC	NA	False	NA	-9	True	NA	NA	NA	182109789	182103532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_182104459_182106540_182107284_182109725
ENSMUSG00000038633.6_182103533_182110369_1	chr1	-	1852	3	FSM	ENSMUSG00000038633.6	ENSMUST00000035295.6	2048	3	0	196	0	-196	multi-exon	FALSE	canonical	3	1138	junction_1	20.5	3044	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGCCTTAGTGGAATTTC	NA	False	NA	-9	True	NA	NA	NA	182110369	182103532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_182104459_182106540_182107284_182110186
ENSMUSG00000038633.6_182103533_182110369_2	chr1	-	1847	3	NNC	ENSMUSG00000038633.6	novel	2048	3	NA	NA	0	-196	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	569	2996	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGCCTTAGTGGAATTTC	NA	False	NA	-9	True	NA	NA	NA	182110369	182103532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_182104459_182106540_182107279_182110186
ENSMUSG00000038633.6_182103959_182110369_1	chr1	-	1426	3	FSM	ENSMUSG00000038633.6	ENSMUST00000035295.6	2048	3	0	622	0	-622	multi-exon	FALSE	canonical	3	1138	junction_1	20.5	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATTAATAATATTCATTG	NA	False	NA	-1	True	AATAAA	-18	NA	182110369	182103958	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_182104459_182106540_182107284_182110186
ENSMUSG00000038646.14_81412798_81418351_1	chr7	+	439	3	FSM	ENSMUSG00000038646.14	ENSMUST00000042166.11	1452	3	125	888	0	-877	multi-exon	FALSE	canonical	3	441	junction_1	195	745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTAAATGCTTGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	81412797	81418351	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_81412805_81417274_81417472_81418116
ENSMUSG00000038646.14_81412798_81418613_1	chr7	+	701	3	FSM	ENSMUSG00000038646.14	ENSMUST00000042166.11	1452	3	125	626	0	-615	multi-exon	FALSE	canonical	3	441	junction_1	195	2275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGCTTTTGCTGTATGA	NA	False	NA	NA	False	AATAAA	-16	NA	81412797	81418613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_81412805_81417274_81417472_81418116
ENSMUSG00000038650.16_140740241_140748620_1	chr7	-	1572	10	FSM	ENSMUSG00000038650.16	ENSMUST00000106033.5	2091	10	519	0	-18	0	multi-exon	FALSE	canonical	3	441	junction_9	110.454616120026	2137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGGTCCTTGTCGTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	140748620	140740240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748588
ENSMUSG00000038670.12_44151123_44156543_1	chr7	-	1138	8	ISM	ENSMUSG00000038670.12	ENSMUST00000165208.4	3611	28	17537	0	1959	0	3prime_fragment	FALSE	canonical	2	4	junction_7	5.67845911838623	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTCTGTAGTTCTTGTCC	NA	False	NA	5	True	GATAAA	-37	NA	44156543	44151122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_44151267_44153060_44153248_44154422_44154560_44154659_44154820_44154989_44155130_44155475_44155672_44156231_44156321_44156458
ENSMUSG00000038671.16_181000283_181007117_1	chr2	-	1697	8	NIC	ENSMUSG00000038671.16	novel	2447	8	NA	NA	-4	-605	combination_of_known_junctions	FALSE	canonical	3	46	junction_7	90.1022095359781	1232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTAGATGGTGGTTCCC	6156	False	NA	-6	True	AATAAA	-27	NA	181007117	181000282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006492_181007011
ENSMUSG00000038671.16_181001108_181007117_1	chr2	-	872	8	NIC	ENSMUSG00000038671.16	novel	2447	8	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_7	90.1022095359781	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGTGTAGGTATTCAGA	6156	False	NA	NA	False	NA	NA	NA	181007117	181001107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006492_181007011
ENSMUSG00000038671.16_181001108_181007117_2	chr2	-	885	8	FSM	ENSMUSG00000038671.16	ENSMUST00000127988.8	2447	8	80	1482	-4	0	multi-exon	FALSE	canonical	3	258	junction_2	23.8627025172878	1160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGTGTAGGTATTCAGA	6156	False	NA	NA	False	NA	NA	NA	181007117	181001107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
ENSMUSG00000038671.16_181001108_181007117_3	chr2	-	1099	7	NIC	ENSMUSG00000038671.16	novel	2447	8	NA	NA	-4	0	intron_retention	FALSE	canonical	3	258	junction_2	25.5891687156022	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGTGTAGGTATTCAGA	6156	False	NA	NA	False	NA	NA	NA	181007117	181001107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181006192_181006397_181006505_181007011
ENSMUSG00000038683.17_41154736_41166491_1	chr13	+	1485	10	FSM	ENSMUSG00000038683.17	ENSMUST00000046951.10	1722	10	237	0	0	0	multi-exon	FALSE	canonical	3	605	junction_5	43.1108247413169	2188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGCTTAATTACATTTAT	NA	False	NA	NA	False	AGTAAA	-28	NA	41154735	41166491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162415_41162694_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040
ENSMUSG00000038690.16_145120516_145124044_1	chr5	-	384	3	NNC	ENSMUSG00000038690.16	novel	607	5	NA	NA	4277	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3161	1926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	8910	False	NA	-10	True	AATAAA	-17	NA	145124044	145120515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145120670_145121337_145121459_145123935
ENSMUSG00000038690.16_145120516_145128352_1	chr5	-	410	4	NNC	ENSMUSG00000038690.16	novel	607	5	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2456.69986409049	4996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	8617	False	NA	-10	True	AATAAA	-17	NA	145128352	145120515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145120678_145121341_145121436_145123929_145124044_145128312
ENSMUSG00000038690.16_145120516_145128352_10	chr5	-	1091	3	NIC	ENSMUSG00000038690.16	novel	607	5	NA	NA	-14	0	intron_retention	FALSE	canonical	3	4948	junction_2	687	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	8617	False	NA	-10	True	AATAAA	-17	NA	145128352	145120515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_145121459_145123935_145124044_145128312
ENSMUSG00000038690.16_145120516_145128352_11	chr5	-	411	4	NNC	ENSMUSG00000038690.16	novel	607	5	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2456.69986409049	8118	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	8617	False	NA	-10	True	AATAAA	-17	NA	145128352	145120515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145120678_145121341_145121443_145123935_145124044_145128312
ENSMUSG00000038690.16_145120516_145128352_12	chr5	-	422	4	NNC	ENSMUSG00000038690.16	novel	607	5	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2456.69986409049	55188	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	8617	False	NA	-10	True	AATAAA	-17	NA	145128352	145120515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145120678_145121341_145121459_145123940_145124044_145128312
ENSMUSG00000038690.16_145120516_145128352_2	chr5	-	407	4	NNC	ENSMUSG00000038690.16	novel	607	5	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2714.94350258384	3347	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	8617	False	NA	-10	True	AATAAA	-17	NA	145128352	145120515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145120658_145121341_145121459_145123935_145124044_145128312
ENSMUSG00000038690.16_145120516_145128352_3	chr5	-	417	4	NNC	ENSMUSG00000038690.16	novel	607	5	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2332.50956887402	4754	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	8617	False	NA	-10	True	AATAAA	-17	NA	145128352	145120515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145120670_145121341_145121459_145123937_145124044_145128312
ENSMUSG00000038690.16_145120516_145128352_4	chr5	-	314	3	NNC	ENSMUSG00000038690.16	novel	607	5	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2474	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	8617	False	NA	-10	True	AATAAA	-17	NA	145128352	145120515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145120678_145123931_145124044_145128312
ENSMUSG00000038690.16_145120516_145128352_5	chr5	-	419	4	NNC	ENSMUSG00000038690.16	novel	607	5	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2714.94350258384	11342	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	8617	False	NA	-10	True	AATAAA	-17	NA	145128352	145120515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145120670_145121341_145121459_145123935_145124044_145128312
ENSMUSG00000038690.16_145120516_145128352_6	chr5	-	400	4	NNC	ENSMUSG00000038690.16	novel	607	5	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2456.69986409049	4418	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	8617	False	NA	-10	True	AATAAA	-17	NA	145128352	145120515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145120678_145121341_145121459_145123962_145124044_145128312
ENSMUSG00000038690.16_145120516_145128352_7	chr5	-	417	4	NNC	ENSMUSG00000038690.16	novel	607	5	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2456.69986409049	35727	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	8617	False	NA	-10	True	AATAAA	-17	NA	145128352	145120515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145120678_145121341_145121459_145123945_145124044_145128312
ENSMUSG00000038690.16_145120516_145128352_8	chr5	-	404	4	NNC	ENSMUSG00000038690.16	novel	607	5	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2714.94350258384	10736	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	8617	False	NA	-10	True	AATAAA	-17	NA	145128352	145120515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145120678_145121364_145121459_145123935_145124044_145128312
ENSMUSG00000038690.16_145120516_145128352_9	chr5	-	407	4	NNC	ENSMUSG00000038690.16	novel	607	5	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2795.61577394955	9087	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	8617	False	NA	-10	True	AATAAA	-17	NA	145128352	145120515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145120678_145121341_145121459_145123935_145124024_145128312
ENSMUSG00000038695.14_44117463_44121076_1	chr7	+	932	6	NIC	ENSMUSG00000038695.14	novel	922	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	25.8580741742304	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGCCTGGGCTCAGCTC	4801	False	NA	24	True	AATAAA	-16	NA	44117462	44121076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_44117615_44117783_44117842_44118230_44118394_44119835_44119962_44120536_44120732_44120838
ENSMUSG00000038696.15_34296874_34513931_1	chr2	+	2402	12	FSM	ENSMUSG00000038696.15	ENSMUST00000147337.8	3111	12	-321	1030	0	0	multi-exon	FALSE	canonical	3	190	junction_6	16.5988150527989	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGGTATGATGGACCATT	NA	False	NA	26	True	AATAAA	-20	NA	34296873	34513931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_34297267_34322014_34322343_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
ENSMUSG00000038712.17_95160985_95189028_1	chr3	+	2781	8	NIC	ENSMUSG00000038712.17	novel	486	3	NA	NA	-27671	-1799	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGGCGGGACTCGAACCC	13	False	NA	NA	False	NA	NA	NA	95160984	95189028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_95162739_95165337_95165497_95166550_95166646_95169521_95169681_95170902_95171088_95172728_95172932_95175541_95175635_95188895
ENSMUSG00000038712.17_95194045_95203475_1	chr3	+	2286	10	NNC	ENSMUSG00000038712.17	novel	1812	9	NA	NA	535	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	57.7119282875444	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGCGTTCCTACCTTGG	NA	False	NA	13	True	AATAAA	-14	NA	95194044	95203475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_95194188_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
ENSMUSG00000038712.17_95202144_95203475_1	chr3	+	794	3	ISM	ENSMUSG00000038712.17	ENSMUST00000133762.2	1373	6	2847	-3	2847	1	3prime_fragment	FALSE	canonical	3	18	junction_1	98.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGCGTTCCTACCTTGG	NA	False	NA	13	True	AATAAA	-14	NA	95202143	95203475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_95202298_95202610_95202737_95202961
ENSMUSG00000038712.17_95202144_95203475_2	chr3	+	821	3	ISM	ENSMUSG00000038712.17	ENSMUST00000107187.9	2827	10	11889	2	2847	1	3prime_fragment	FALSE	canonical	3	134	junction_1	40.5	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGCGTTCCTACCTTGG	NA	False	NA	13	True	AATAAA	-14	NA	95202143	95203475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_95202298_95202583_95202737_95202961
ENSMUSG00000038736.11_44268656_44291250_1	chr15	-	801	4	ISM	ENSMUSG00000038736.11	ENSMUST00000227645.2	2895	8	34	18278	0	7169	5prime_fragment	FALSE	canonical	3	312	junction_1	19.1891172861657	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTATGCTTTATAAGG	NA	False	NA	NA	False	GGGGCT	-40	NA	44291250	44268655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_44268926_44269205_44269389_44284114_44284270_44291057
ENSMUSG00000038736.11_44291488_44299251_1	chr15	-	613	5	NNC	ENSMUSG00000038736.11	novel	2600	10	NA	NA	-7548	-2468	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	4540	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCGGGATCTGGCCACCC	NA	False	NA	NA	False	NA	NA	NA	44299251	44291487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_44291639_44292960_44293033_44295833_44295905_44297294_44297370_44299007
ENSMUSG00000038736.11_44291488_44299263_1	chr15	-	603	5	NIC	ENSMUSG00000038736.11	novel	2600	10	NA	NA	-7560	-2468	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	2211	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCGGGATCTGGCCACCC	NA	False	NA	NA	False	NA	NA	NA	44299263	44291487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_44291567_44292955_44293033_44295833_44295905_44297249_44297370_44299007
ENSMUSG00000038736.11_44291488_44299263_2	chr15	-	662	6	NIC	ENSMUSG00000038736.11	novel	2600	10	NA	NA	-7560	-2468	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1342	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCGGGATCTGGCCACCC	NA	False	NA	NA	False	NA	NA	NA	44299263	44291487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_44291567_44292955_44293033_44294086_44294191_44295833_44295905_44297294_44297370_44299007
ENSMUSG00000038736.11_44291543_44299251_1	chr15	-	536	5	NIC	ENSMUSG00000038736.11	novel	2600	10	NA	NA	-7548	-2523	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	319	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCCTCAGTAGCTCGGGC	NA	False	NA	NA	False	NA	NA	NA	44299251	44291542	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_44291567_44292955_44293033_44295833_44295905_44297249_44297370_44299007
ENSMUSG00000038736.11_44291543_44299251_2	chr15	-	595	6	NIC	ENSMUSG00000038736.11	novel	2600	10	NA	NA	-7548	-2523	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	206	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCCTCAGTAGCTCGGGC	NA	False	NA	NA	False	NA	NA	NA	44299251	44291542	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_44291567_44292955_44293033_44294086_44294191_44295833_44295905_44297294_44297370_44299007
ENSMUSG00000038736.11_44291543_44299263_2	chr15	-	498	5	NNC	ENSMUSG00000038736.11	novel	2600	10	NA	NA	-7560	-2523	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1449	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCCTCAGTAGCTCGGGC	NA	False	NA	NA	False	NA	NA	NA	44299263	44291542	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_44291562_44292955_44293033_44295833_44295905_44297294_44297370_44299007
ENSMUSG00000038736.11_44291543_44299263_3	chr15	-	570	5	NNC	ENSMUSG00000038736.11	novel	2600	10	NA	NA	-7560	-2523	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2753	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCCTCAGTAGCTCGGGC	NA	False	NA	NA	False	NA	NA	NA	44299263	44291542	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_44291639_44292960_44293033_44295833_44295905_44297294_44297370_44299007
ENSMUSG00000038738.16_44009467_44024454_1	chr7	+	1083	5	Fusion	ENSMUSG00000108509.2_ENSMUSG00000038738.16	novel	581	2	NA	NA	-2521	11742	intron_retention	FALSE	non_canonical	0	0	junction_1	0	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTCTCTAGGGGGGAGGG	NA	False	NA	NA	False	NA	NA	NA	44009466	44024454	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr7_+_44009806_44010473_44010608_44012075_44012440_44023746_44023949_44024410
ENSMUSG00000038742.8_20785104_20789184_2	chr9	-	1075	5	NNC	ENSMUSG00000038742.8	novel	1582	6	NA	NA	1839	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	50.2910280268757	422	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGTCTGTCTTCCTGT	NA	False	NA	-5	True	NA	NA	NA	20789184	20785103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687_20787866_20789011
ENSMUSG00000038759.16_35220861_35224538_1	chr6	+	715	5	ISM	ENSMUSG00000038759.16	ENSMUST00000201609.4	4508	30	38879	-7	-1248	7	3prime_fragment	FALSE	canonical	3	434	junction_1	11.3660679216693	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGGTCATTCTTTTGAA	NA	False	NA	NA	False	AATAAA	-23	NA	35220860	35224538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_35220921_35221631_35221756_35222182_35222312_35222956_35223016_35224195
ENSMUSG00000038762.16_36267711_36268589_1	chr17	-	790	2	ISM	ENSMUSG00000038762.16	ENSMUST00000173111.2	855	4	789	-468	491	0	3prime_fragment	FALSE	canonical	3	962	junction_1	0	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGGGGTGCT	3657	False	NA	-12	True	AATAAA	-18	NA	36268589	36267710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_36268482_36268570
ENSMUSG00000038762.16_36272889_36280653_1	chr17	-	884	8	NIC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	0	-296	intron_retention	FALSE	canonical	3	825	junction_2	69.2499171148108	2554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGAAACAGGTAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	36280653	36272888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_36272977_36274017_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
ENSMUSG00000038762.16_36272889_36280653_2	chr17	-	800	9	ISM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	0	5178	0	-296	5prime_fragment	FALSE	canonical	3	825	junction_3	70.9954884129971	2827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGAAACAGGTAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	36280653	36272888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
ENSMUSG00000038762.16_36272889_36280653_3	chr17	-	794	9	NNC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	0	-296	at_least_one_novel_splicesite	TRUE	canonical	3	37	junction_6	293.470159258143	2726	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGAAACAGGTAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	36280653	36272888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274933_36275145_36275233_36275968_36276016_36280537
ENSMUSG00000038770.18_145020694_145045571_1	chr5	-	1569	10	NNC	ENSMUSG00000038770.18	novel	676	8	NA	NA	-24731	-76606	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1277	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGAGGCCTAGAGGGAG	NA	False	NA	NA	False	NA	NA	NA	145045571	145020693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034025_145034134_145037866_145038080_145041251_145041319_145041507_145041702_145043854_145043946_145045186
ENSMUSG00000038770.18_145020694_145045571_2	chr5	-	1573	10	NNC	ENSMUSG00000038770.18	novel	676	8	NA	NA	-24731	-76606	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1925	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGAGGCCTAGAGGGAG	NA	False	NA	NA	False	NA	NA	NA	145045571	145020693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034025_145034134_145037866_145038075_145041251_145041328_145041507_145041702_145043854_145043946_145045186
ENSMUSG00000038770.18_145020694_145045571_3	chr5	-	1578	10	NIC	ENSMUSG00000038770.18	novel	676	8	NA	NA	-24731	-76606	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2886	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGAGGCCTAGAGGGAG	NA	False	NA	NA	False	NA	NA	NA	145045571	145020693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034025_145034134_145037866_145038080_145041251_145041328_145041507_145041702_145043854_145043946_145045186
ENSMUSG00000038770.18_145020694_145045571_4	chr5	-	1569	10	NNC	ENSMUSG00000038770.18	novel	676	8	NA	NA	-24731	-76606	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	596	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGAGGCCTAGAGGGAG	NA	False	NA	NA	False	NA	NA	NA	145045571	145020693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034034_145034134_145037866_145038080_145041251_145041328_145041507_145041702_145043854_145043946_145045186
ENSMUSG00000038775.15_118892550_118900394_1	chr9	+	1411	9	NIC	ENSMUSG00000038775.15	novel	1645	11	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	4	junction_6	9.33993442161132	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGGTGTGGCACGTGTGCC	NA	False	NA	3	True	AATAAA	-16	NA	118892549	118900394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_118892670_118894526_118894665_118894927_118895087_118895768_118895949_118896478_118896625_118897379_118897525_118899345_118899418_118899624_118899883_118900201
ENSMUSG00000038781.8_56304077_56307261_1	chr17	-	971	7	ISM	ENSMUSG00000038781.8	ENSMUST00000043785.8	1509	13	5323	0	-1781	0	3prime_fragment	FALSE	canonical	3	15	junction_5	6.20931200339905	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGTGGCTGTAGGATT	NA	False	NA	-4	True	NA	NA	NA	56307261	56304076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_56304362_56304459_56304535_56304604_56304698_56304777_56304952_56306742_56306809_56306912_56307016_56307086
ENSMUSG00000038782.8_43879350_43896119_1	chr7	-	1177	4	NIC	ENSMUSG00000038782.8	novel	1306	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	1.24721912892465	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTATCTGACTGTTTATC	NA	False	NA	NA	False	AATAAA	-23	NA	43896119	43879349	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_43880066_43880749_43880897_43881779_43881981_43896006
ENSMUSG00000038784.14_35055028_35110650_1	chr6	-	566	3	ISM	ENSMUSG00000038784.14	ENSMUST00000202417.2	3296	11	9	33097	0	-25193	5prime_fragment	FALSE	canonical	3	141	junction_1	39.5	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAAAGAAAACAGAAAATCT	7655	False	NA	NA	False	NA	NA	NA	35110650	35055027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_35055114_35056895_35057162_35110436
ENSMUSG00000038793.9_180764436_180765966_1	chr1	+	1174	2	FSM	ENSMUSG00000038793.9	ENSMUST00000132087.2	583	2	0	-591	0	1	multi-exon	FALSE	canonical	3	265	junction_1	0	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTGTTTCCTTATTT	NA	False	NA	9	True	AATAAA	-18	NA	180764435	180765966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180764820_180765176
ENSMUSG00000038803.8_31063862_31065069_1	chr5	-	448	3	FSM	ENSMUSG00000038803.8	ENSMUST00000132253.5	1144	3	63	633	0	0	multi-exon	FALSE	canonical	3	823	junction_2	132.5	8795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTTTGTGGTCCCAAA	NA	False	NA	-5	True	NA	NA	NA	31065069	31063861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31064111_31064742_31064881_31065008
ENSMUSG00000038806.8_180678692_180693938_1	chr1	+	1473	7	FSM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	0	1740	0	120	multi-exon	FALSE	canonical	3	422	junction_5	43.0761599444003	2530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGGTTCTAACTAGTCTCT	NA	False	NA	NA	False	ACTAAA	-18	NA	180678691	180693938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180678858_180683367_180683486_180685687_180685800_180687465_180687636_180688662_180688784_180689922_180690407_180693636
ENSMUSG00000038806.8_180678692_180695135_1	chr1	+	2670	7	FSM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	0	543	0	-543	multi-exon	FALSE	canonical	3	422	junction_5	43.0761599444003	2648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTCTGATGGGTTTTG	NA	False	NA	NA	False	NA	NA	NA	180678691	180695135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180678858_180683367_180683486_180685687_180685800_180687465_180687636_180688662_180688784_180689922_180690407_180693636
ENSMUSG00000038811.14_95733062_95736560_1	chr11	+	473	4	NNC	ENSMUSG00000038811.14	novel	629	3	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	6.34209919681348	97	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95733061	95736560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_95733109_95734637_95734722_95735876_95735967_95736308
ENSMUSG00000038812.17_6884074_6887474_1	chr19	+	1267	6	NNC	ENSMUSG00000038812.17	novel	985	4	NA	NA	-2992	-728	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTCAAAGCGGAAGTGGT	6273	False	NA	NA	False	NA	NA	NA	6884073	6887474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_6884320_6884428_6884496_6884609_6884649_6884909_6885042_6885349_6885485_6886826
ENSMUSG00000038812.17_6884074_6887474_2	chr19	+	1255	6	NIC	ENSMUSG00000038812.17	novel	985	4	NA	NA	-2992	-728	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTCAAAGCGGAAGTGGT	6273	False	NA	NA	False	NA	NA	NA	6884073	6887474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_6884320_6884433_6884489_6884609_6884649_6884909_6885042_6885349_6885485_6886826
ENSMUSG00000038812.17_6884074_6887474_3	chr19	+	1127	5	NIC	ENSMUSG00000038812.17	novel	985	4	NA	NA	-2992	-728	intron_retention	FALSE	non_canonical	0	0	junction_1	0	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTCAAAGCGGAAGTGGT	6273	False	NA	NA	False	NA	NA	NA	6884073	6887474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_6884320_6884433_6884496_6884609_6884649_6884909_6885042_6886826
ENSMUSG00000038812.17_6884074_6887474_4	chr19	+	1267	6	NNC	ENSMUSG00000038812.17	novel	985	4	NA	NA	-2992	-728	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTCAAAGCGGAAGTGGT	6273	False	NA	NA	False	NA	NA	NA	6884073	6887474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_6884320_6884433_6884496_6884609_6884649_6884904_6885042_6885349_6885485_6886826
ENSMUSG00000038812.17_6887532_6888396_1	chr19	+	668	3	FSM	ENSMUSG00000038812.17	ENSMUST00000172869.2	485	3	11	-194	0	0	multi-exon	FALSE	canonical	3	822	junction_2	19	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTCTCTTTGCAGCAA	9731	False	NA	16	True	ATTAAA	-16	NA	6887531	6888396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6887833_6887951_6888042_6888119
ENSMUSG00000038812.17_6887532_6888396_2	chr19	+	559	4	NNC	ENSMUSG00000038812.17	novel	985	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	396.754612099497	4312	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTCTCTTTGCAGCAA	9731	False	NA	16	True	ATTAAA	-16	NA	6887531	6888396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_6887631_6887739_6887833_6887951_6888042_6888119
ENSMUSG00000038827.12_56802349_56806464_1	chr4	+	1138	6	FSM	ENSMUSG00000038827.12	ENSMUST00000045368.12	4275	6	0	3137	0	517	multi-exon	FALSE	canonical	3	125	junction_2	10.8369737473153	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGTTTCTCATTGGCTT	0	True	NA	3	True	AAAACA	-21	NA	56802348	56806464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_56802727_56803595_56803648_56804153_56804284_56805681_56805759_56805877_56805948_56806033
ENSMUSG00000038827.12_56802349_56806610_1	chr4	+	1284	6	FSM	ENSMUSG00000038827.12	ENSMUST00000045368.12	4275	6	0	2991	0	663	multi-exon	FALSE	canonical	3	125	junction_2	10.8369737473153	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGGCTTCATGCTTTCA	0	True	NA	NA	False	NA	NA	NA	56802348	56806610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_56802727_56803595_56803648_56804153_56804284_56805681_56805759_56805877_56805948_56806033
ENSMUSG00000038827.12_56802618_56806464_1	chr4	+	869	6	FSM	ENSMUSG00000038827.12	ENSMUST00000045368.12	4275	6	269	3137	0	517	multi-exon	FALSE	canonical	3	125	junction_2	10.8369737473153	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGTTTCTCATTGGCTT	26	False	NA	3	True	AAAACA	-21	NA	56802617	56806464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_56802727_56803595_56803648_56804153_56804284_56805681_56805759_56805877_56805948_56806033
ENSMUSG00000038828.14_31026977_31034807_1	chr5	+	2772	17	FSM	ENSMUSG00000038828.14	ENSMUST00000201203.4	6110	17	1621	1717	0	0	multi-exon	TRUE	canonical	3	358	junction_2	22.5422346662881	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGCTTTCCTGTCTGA	NA	False	NA	14	True	AATAAA	-14	NA	31026976	31034807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31027163_31027932_31028133_31028763_31028915_31029064_31029200_31029415_31029499_31029844_31029951_31030030_31030113_31030386_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031880_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706_31033853_31034007
ENSMUSG00000038843.19_17306033_17334031_1	chr19	-	2078	3	FSM	ENSMUSG00000038843.19	ENSMUST00000174236.8	4606	3	0	2528	0	0	multi-exon	FALSE	canonical	3	31	junction_2	7	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATATGATTCACCTTGT	8034	False	NA	NA	False	AATAAA	-22	NA	17334031	17306032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_17307853_17310473_17310621_17333920
ENSMUSG00000038845.12_95557826_95570534_1	chr11	+	691	7	FSM	ENSMUSG00000038845.12	ENSMUST00000125172.8	1799	7	43	1065	0	0	multi-exon	FALSE	canonical	3	4384	junction_3	774.980806213935	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCAGCCATCATCTCTGC	NA	False	NA	NA	False	NA	NA	NA	95557825	95570534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
ENSMUSG00000038845.12_95557826_95570863_1	chr11	+	1004	7	NNC	ENSMUSG00000038845.12	novel	1799	7	NA	NA	0	329	at_least_one_novel_splicesite	FALSE	canonical	2	220	junction_1	2166.48730667872	9957	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCAAGCGAAGCTTTTAT	NA	False	NA	9	True	AATAAA	-25	NA	95557825	95570863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_95557853_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
ENSMUSG00000038845.12_95557826_95570863_2	chr11	+	1025	7	NNC	ENSMUSG00000038845.12	novel	1799	7	NA	NA	0	329	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2139.0493540096	16061	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCAAGCGAAGCTTTTAT	NA	False	NA	9	True	AATAAA	-25	NA	95557825	95570863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566518_95568876_95568973_95570519
ENSMUSG00000038845.12_95557826_95570863_3	chr11	+	1012	7	NNC	ENSMUSG00000038845.12	novel	1799	7	NA	NA	0	329	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2139.0493540096	6607	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCAAGCGAAGCTTTTAT	NA	False	NA	9	True	AATAAA	-25	NA	95557825	95570863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566506_95568877_95568973_95570519
ENSMUSG00000038845.12_95557826_95570863_4	chr11	+	1012	7	NNC	ENSMUSG00000038845.12	novel	1799	7	NA	NA	0	329	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2239.21090391732	9871	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCAAGCGAAGCTTTTAT	NA	False	NA	9	True	AATAAA	-25	NA	95557825	95570863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_95557869_95558862_95558978_95562212_95562375_95565975_95566111_95566395_95566513_95568876_95568973_95570519
ENSMUSG00000038845.12_95557826_95570863_5	chr11	+	1011	7	NNC	ENSMUSG00000038845.12	novel	1799	7	NA	NA	0	329	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2239.21090391732	13399	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCAAGCGAAGCTTTTAT	NA	False	NA	9	True	AATAAA	-25	NA	95557825	95570863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_95557869_95558862_95558978_95562212_95562366_95565967_95566111_95566395_95566513_95568876_95568973_95570519
ENSMUSG00000038845.12_95557826_95570863_6	chr11	+	1008	7	NNC	ENSMUSG00000038845.12	novel	1799	7	NA	NA	0	329	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2157.58865531768	10895	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCAAGCGAAGCTTTTAT	NA	False	NA	9	True	AATAAA	-25	NA	95557825	95570863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570531
ENSMUSG00000038845.12_95557826_95570863_7	chr11	+	1013	7	NNC	ENSMUSG00000038845.12	novel	1799	7	NA	NA	0	329	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2139.0493540096	9548	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCAAGCGAAGCTTTTAT	NA	False	NA	9	True	AATAAA	-25	NA	95557825	95570863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566506_95568876_95568973_95570519
ENSMUSG00000038845.12_95557826_95571599_1	chr11	+	1749	7	NNC	ENSMUSG00000038845.12	novel	1799	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2139.0493540096	12009	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGGGTGTGTTTTCAATT	NA	False	NA	11	True	AATAAA	-25	NA	95557825	95571599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566506_95568876_95568973_95570519
ENSMUSG00000038871.6_34453291_34482062_1	chr6	+	1340	3	NNC	ENSMUSG00000038871.6	novel	2220	3	NA	NA	0	-486	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	39	168	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGCGCAAGGTGCCTCGAG	NA	False	NA	15	True	AATAAA	-20	NA	34453290	34482062	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_34453358_34464469_34464886_34481205
ENSMUSG00000038876.13_29222172_29238043_2	chr10	-	1928	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160144.9	4323	3	395	2000	0	0	multi-exon	FALSE	canonical	3	77	junction_2	74.5	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATAATTTGTTTGAGTC	NA	False	NA	NA	False	AATAAA	-15	NA	29238043	29222171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_29223880_29230287_29230444_29237979
ENSMUSG00000038876.13_29222172_29238043_4	chr10	-	2009	4	FSM	ENSMUSG00000038876.13	ENSMUST00000161508.3	945	4	-21	-1043	0	0	multi-exon	FALSE	canonical	3	17	junction_3	93.3821301011185	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATAATTTGTTTGAGTC	NA	False	NA	NA	False	AATAAA	-15	NA	29238043	29222171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_29223880_29230287_29230444_29237280_29237342_29237959
ENSMUSG00000038876.13_29222429_29238043_1	chr10	-	1671	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160144.9	4323	3	395	2257	0	225	multi-exon	FALSE	canonical	3	77	junction_2	74.5	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATTTGATATCATTATGA	NA	False	NA	-19	True	AATAAA	-16	NA	29238043	29222428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_29223880_29230287_29230444_29237979
ENSMUSG00000038880.14_25114109_25115263_1	chr17	+	1072	2	FSM	ENSMUSG00000038880.14	ENSMUST00000138648.2	899	2	0	-173	0	0	multi-exon	FALSE	canonical	3	669	junction_1	0	2184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGTGGTTTCATTACA	NA	False	NA	16	True	AATAAA	-16	NA	25114108	25115263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25114679_25114761
ENSMUSG00000038884.15_20779938_20785485_1	chr9	+	1565	8	FSM	ENSMUSG00000038884.15	ENSMUST00000043911.8	1683	8	0	118	0	-118	multi-exon	TRUE	canonical	3	59	junction_6	22.3469853694417	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTGTGCAAAGCTTTT	NA	False	NA	-99	True	AATAAA	-15	NA	20779937	20785485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_20780233_20780625_20780750_20780899_20780950_20782492_20782532_20782671_20782822_20784163_20784268_20784405_20784561_20784837
ENSMUSG00000038884.15_20785104_20789371_1	chr9	+	929	5	NIC	ENSMUSG00000038884.15	novel	3210	7	NA	NA	3036	3768	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGCGCGTTGCAGGCGGC	NA	False	NA	NA	False	NA	NA	NA	20785103	20789371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_20785369_20786461_20786733_20786809_20786998_20787687_20787866_20789344
ENSMUSG00000038884.15_20785104_20789522_2	chr9	+	1080	5	NIC	ENSMUSG00000038884.15	novel	3210	7	NA	NA	3036	3919	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCAGCAGGCTCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	20785103	20789522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_20785369_20786461_20786733_20786809_20786998_20787687_20787866_20789344
ENSMUSG00000038900.18_32851732_32854057_1	chr2	+	1181	6	NIC	ENSMUSG00000038900.18	novel	729	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	310	junction_1	2525.09163398083	5156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5802	False	NA	24	True	AATAAA	-23	NA	32851731	32854057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853596_32853752_32853866_32854002
ENSMUSG00000038900.18_32851732_32854057_2	chr2	+	1217	5	NIC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	2580	junction_4	1523.82780769351	3460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5802	False	NA	24	True	AATAAA	-23	NA	32851731	32854057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853866_32854002
ENSMUSG00000038900.18_32851732_32854057_3	chr2	+	620	7	NNC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2381.32025122386	33969	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5802	False	NA	24	True	AATAAA	-23	NA	32851731	32854057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854012
ENSMUSG00000038900.18_32851732_32854057_4	chr2	+	623	7	NNC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2381.32025122386	194696	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5802	False	NA	24	True	AATAAA	-23	NA	32851731	32854057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854009
ENSMUSG00000038900.18_32851732_32854057_5	chr2	+	620	7	NNC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2381.32025122386	74838	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5802	False	NA	24	True	AATAAA	-23	NA	32851731	32854057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853856_32854002
ENSMUSG00000038900.18_32851732_32854057_6	chr2	+	1060	6	NIC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	2580	junction_5	1481.81753262674	4244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5802	False	NA	24	True	AATAAA	-23	NA	32851731	32854057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853596_32853752_32853866_32854002
ENSMUSG00000038900.18_32851732_32854057_7	chr2	+	1338	5	NIC	ENSMUSG00000038900.18	novel	729	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	310	junction_1	2554.7315416693	3492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5802	False	NA	24	True	AATAAA	-23	NA	32851731	32854057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853866_32854002
ENSMUSG00000038900.18_32851732_32854057_8	chr2	+	620	7	NNC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2421.12356837344	46649	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5802	False	NA	24	True	AATAAA	-23	NA	32851731	32854057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853079_32853518_32853596_32853752_32853866_32854002
ENSMUSG00000038909.17_95193998_95201028_1	chr11	-	454	3	ISM	ENSMUSG00000038909.17	ENSMUST00000107734.10	3560	15	44	28913	-1	0	5prime_fragment	FALSE	canonical	3	867	junction_2	31.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTGAAACGGAGCAGGTG	NA	False	NA	NA	False	AAAAAG	-29	NA	95201028	95193997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_95194136_95196874_95197023_95200860
ENSMUSG00000038930.12_79944221_79966002_1	chr7	-	2963	15	NIC	ENSMUSG00000038930.12	novel	3367	9	NA	NA	2949	-1244	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCGTTGGACCCCGCGGA	NA	False	NA	NA	False	NA	NA	NA	79966002	79944220	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79963274_79963317_79964861
ENSMUSG00000038936.14_179495825_179514394_1	chr1	+	1538	12	FSM	ENSMUSG00000038936.14	ENSMUST00000040538.10	1948	12	50	360	0	4	multi-exon	FALSE	canonical	3	160	junction_9	16.3434218576322	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATATCTCAGCTGTTTT	NA	False	NA	19	True	ATTAAA	-30	NA	179495824	179514394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_179496111_179498147_179498261_179503955_179504037_179505605_179505736_179506444_179506495_179507149_179507281_179508056_179508175_179508997_179509118_179509215_179509273_179511769_179511882_179513260_179513343_179514136
ENSMUSG00000038936.14_179495825_179514754_1	chr1	+	1898	12	FSM	ENSMUSG00000038936.14	ENSMUST00000040538.10	1948	12	50	0	0	0	multi-exon	FALSE	canonical	3	160	junction_9	16.3434218576322	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCCCCTTTTTTGGT	NA	False	NA	12	True	AATAAA	-19	NA	179495824	179514754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_179496111_179498147_179498261_179503955_179504037_179505605_179505736_179506444_179506495_179507149_179507281_179508056_179508175_179508997_179509118_179509215_179509273_179511769_179511882_179513260_179513343_179514136
ENSMUSG00000038954.15_45088039_45430177_1	chr17	+	1428	12	FSM	ENSMUSG00000038954.15	ENSMUST00000127798.8	1180	12	-244	-4	0	0	multi-exon	FALSE	canonical	1	6	junction_10	31.9782984264006	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGAGTGGCCTGCTTTGTTT	NA	False	NA	26	True	AATAAA	-27	NA	45088038	45430177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_45088316_45097496_45097598_45234065_45234151_45302620_45302708_45305203_45305295_45313976_45314117_45344124_45344201_45347598_45347712_45348962_45349071_45352102_45352194_45359168_45359280_45430029
ENSMUSG00000038954.15_45088039_45430177_2	chr17	+	1397	11	NIC	ENSMUSG00000038954.15	novel	1508	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	35.1290478094696	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGAGTGGCCTGCTTTGTTT	NA	False	NA	26	True	AATAAA	-27	NA	45088038	45430177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_45088316_45097496_45097598_45234065_45234151_45302620_45302708_45305203_45305295_45313976_45314117_45344124_45344201_45347598_45347712_45348962_45349071_45352102_45352274_45430029
ENSMUSG00000038957.14_57615850_57657446_2	chr9	+	1989	8	NNC	ENSMUSG00000038957.14	novel	5708	7	NA	NA	0	-1240	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_7	86.0609655762609	69	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTCCTAGAGTGAAGTG	NA	False	NA	16	True	AATAAA	-26	NA	57615849	57657446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_57615983_57620663_57620845_57623230_57623551_57634468_57634805_57647172_57647327_57651867_57652086_57655443_57655716_57657071
ENSMUSG00000038965.18_16969877_17019337_1	chr16	-	1344	5	FSM	ENSMUSG00000038965.18	ENSMUST00000232668.2	1025	5	-14	-305	0	0	multi-exon	FALSE	canonical	3	4	junction_1	853.056856252853	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGTGTATGGGTTTCTTT	NA	False	NA	1	True	AATAAA	-20	NA	17019337	16969876	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_16970800_16972047_16972147_16977853_16978041_16994275_16994372_17019298
ENSMUSG00000038965.18_16970840_17019337_1	chr16	-	1629	4	FSM	ENSMUSG00000038965.18	ENSMUST00000090192.12	2609	4	19	961	0	-658	multi-exon	FALSE	canonical	3	1494	junction_3	290.114153777823	11368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTCTGTCAAGATTTGA	NA	False	NA	-19	True	AATAAA	-27	NA	17019337	16970839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_16972147_16977853_16978041_16994275_16994372_17019298
ENSMUSG00000038965.18_16971174_17019337_1	chr16	-	1295	4	FSM	ENSMUSG00000038965.18	ENSMUST00000090192.12	2609	4	19	1295	0	546	multi-exon	FALSE	canonical	3	1494	junction_3	290.114153777823	10689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCAGAATATTCTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	17019337	16971173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_16972147_16977853_16978041_16994275_16994372_17019298
ENSMUSG00000038965.18_16971789_17019337_1	chr16	-	670	4	NNC	ENSMUSG00000038965.18	novel	2609	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	985.530426837357	1271	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGCTTGCTTTGTTTTA	NA	False	NA	-19	True	ATTAAA	-17	NA	17019337	16971788	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_16972147_16977853_16978041_16994275_16994362_17019298
ENSMUSG00000038965.18_16971789_17019337_2	chr16	-	672	4	NNC	ENSMUSG00000038965.18	novel	2609	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	842.524777083737	1053	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGCTTGCTTTGTTTTA	NA	False	NA	-19	True	ATTAAA	-17	NA	17019337	16971788	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_16972139_16977853_16978041_16994275_16994372_17019298
ENSMUSG00000038965.18_16971789_17019337_3	chr16	-	493	3	NIC	ENSMUSG00000038965.18	novel	2609	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	746.5	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGCTTGCTTTGTTTTA	NA	False	NA	-19	True	ATTAAA	-17	NA	17019337	16971788	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_16972147_16994275_16994372_17019298
ENSMUSG00000038975.15_153612926_153618592_1	chr3	-	1331	9	NIC	ENSMUSG00000038975.15	novel	1399	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_8	345.260771012289	2007	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6154	False	NA	-2	True	AATAAA	-15	NA	153618592	153612925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618550
ENSMUSG00000038975.15_153612926_153618592_2	chr3	-	1445	10	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_9	287.574145028528	4460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6154	False	NA	-2	True	AATAAA	-15	NA	153618592	153612925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618550
ENSMUSG00000038975.15_153612926_153618592_3	chr3	-	2310	9	FSM	ENSMUSG00000038975.15_ENSMUSG00000065463.3	ENSMUST00000196266.5	1271	9	-874	-165	0	0	multi-exon	FALSE	canonical	3	426	junction_3	203.564140690348	3765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6154	False	NA	-2	True	AATAAA	-15	NA	153618592	153612925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561
ENSMUSG00000038975.15_153612926_153618592_4	chr3	-	1347	9	NIC	ENSMUSG00000038975.15	novel	1381	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_8	331.806584285183	7134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6154	False	NA	-2	True	AATAAA	-15	NA	153618592	153612925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618550
ENSMUSG00000038975.15_153612926_153618592_5	chr3	-	1318	9	NNC	ENSMUSG00000038975.15	novel	1381	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	30	junction_8	342.327853635955	6457	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6154	False	NA	-2	True	AATAAA	-15	NA	153618592	153612925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617661_153618570
ENSMUSG00000038975.15_153612926_153618592_6	chr3	-	2326	9	FSM	ENSMUSG00000038975.15_ENSMUSG00000065463.3	ENSMUST00000200209.5	1169	9	-874	-283	0	0	multi-exon	FALSE	canonical	3	607	junction_3	165.057565715722	4113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6154	False	NA	-2	True	AATAAA	-15	NA	153618592	153612925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561
ENSMUSG00000038975.15_153613091_153618592_1	chr3	-	1264	10	FSM	ENSMUSG00000038975.15	ENSMUST00000198350.5	1399	10	-28	163	0	0	multi-exon	FALSE	canonical	3	72	junction_9	303.195735987477	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAGTCTTCTGAGTCCA	6154	False	NA	-29	True	AATAAA	-16	NA	153618592	153613090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618550
ENSMUSG00000038975.15_153613091_153618592_3	chr3	-	1280	10	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_9	287.574145028528	789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAGTCTTCTGAGTCCA	6154	False	NA	-29	True	AATAAA	-16	NA	153618592	153613090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618550
ENSMUSG00000038975.15_153613091_153618592_4	chr3	-	1182	9	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_8	331.806584285183	1981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAGTCTTCTGAGTCCA	6154	False	NA	-29	True	AATAAA	-16	NA	153618592	153613090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618550
ENSMUSG00000038982.11_38786677_38819040_1	chr13	-	1729	5	FSM	ENSMUSG00000038982.11	ENSMUST00000035899.8	5634	5	45	3860	-3	-3860	multi-exon	FALSE	canonical	3	63	junction_3	8.98262211161084	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTATTTGAGATTTCTTT	NA	False	NA	-23	True	ATTAAA	-20	NA	38819040	38786676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_38788005_38796618_38796678_38803065_38803196_38814968_38815052_38818911
ENSMUSG00000038982.11_38786677_38819040_2	chr13	-	1670	4	NIC	ENSMUSG00000038982.11	novel	5634	5	NA	NA	-3	-3860	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	34.6538437823121	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTATTTGAGATTTCTTT	NA	False	NA	-23	True	ATTAAA	-20	NA	38819040	38786676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_38788005_38803065_38803196_38814968_38815052_38818911
ENSMUSG00000038987.9_32665828_32667609_1	chr2	-	922	5	NIC	ENSMUSG00000038987.9	novel	1730	9	NA	NA	1549	1565	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	504	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGGACTTCAACGTGCCG	NA	False	NA	NA	False	ACTAAA	-3	NA	32667609	32665827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_32665908_32666315_32666536_32666718_32666819_32666994_32667041_32667133
ENSMUSG00000038991.18_38684249_38697140_1	chr13	-	2090	7	ISM	ENSMUSG00000038991.18	ENSMUST00000160653.2	2586	10	14750	0	-7222	0	3prime_fragment	FALSE	canonical	3	973	junction_6	65.3743493700362	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAAGTCTGGTCTTTGC	NA	False	NA	NA	False	AATAAA	-17	NA	38697140	38684248	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_38685685_38687406_38687537_38688699_38688783_38690924_38691066_38691869_38691957_38694102_38694219_38697043
ENSMUSG00000039001.13_179899211_179900238_1	chr2	+	374	6	NNC	ENSMUSG00000039001.13	novel	394	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	2882.90848970272	228618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTTTGCTGTTTTTAC	NA	False	NA	26	True	AATAAA	-27	NA	179899210	179900238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_179899241_179899392_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
ENSMUSG00000039018.16_139717562_139730528_1	chr7	+	1341	11	NNC	ENSMUSG00000039018.16	novel	1595	11	NA	NA	0	168	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	150.393783116191	2466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCTCTGGCTTCTCTTA	NA	False	NA	30	True	AATAAA	-31	NA	139717561	139730528	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_139717687_139718231_139718312_139720121_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725910_139725973_139726723_139726821_139727165_139727248_139729660_139729774_139730067
ENSMUSG00000039018.16_139717562_139730528_2	chr7	+	1339	11	FSM	ENSMUSG00000039018.16	ENSMUST00000036977.9	1595	11	85	171	0	168	multi-exon	FALSE	canonical	3	445	junction_3	26.942345851837	2510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCTCTGGCTTCTCTTA	NA	False	NA	30	True	AATAAA	-31	NA	139717561	139730528	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_139717687_139718231_139718297_139720108_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725910_139725973_139726723_139726821_139727165_139727248_139729660_139729774_139730067
ENSMUSG00000039018.16_139717562_139730528_3	chr7	+	1333	11	NNC	ENSMUSG00000039018.16	novel	1595	11	NA	NA	0	168	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	149.424228289792	2484	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCTCTGGCTTCTCTTA	NA	False	NA	30	True	AATAAA	-31	NA	139717561	139730528	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_139717687_139718231_139718297_139720108_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725916_139725973_139726723_139726821_139727165_139727248_139729660_139729774_139730067
ENSMUSG00000039033.12_139850468_139908705_1	chr2	-	654	5	ISM	ENSMUSG00000039033.12	ENSMUST00000099304.4	2127	13	0	175068	0	-32016	5prime_fragment	FALSE	canonical	3	59	junction_4	19.0705925445435	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTTGGATATAAGTTATT	NA	False	NA	NA	False	AATAAA	-14	NA	139908705	139850467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
ENSMUSG00000039041.16_179813388_179818079_1	chr2	+	1425	10	FSM	ENSMUSG00000039041.16	ENSMUST00000061437.5	1535	10	110	0	0	0	multi-exon	FALSE	canonical	3	1931	junction_6	170.679108342794	4550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATGGTCTGGGCCTGTGTT	NA	False	NA	2	True	AATAAA	-22	NA	179813387	179818079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_179813482_179813826_179814041_179814648_179814766_179815702_179815827_179816101_179816189_179816657_179816740_179816952_179817186_179817390_179817549_179817646_179817750_179817866
ENSMUSG00000039041.16_179813388_179818079_2	chr2	+	1314	10	NNC	ENSMUSG00000039041.16	novel	1535	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_7	729.37377164622	370	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATGGTCTGGGCCTGTGTT	NA	False	NA	2	True	AATAAA	-22	NA	179813387	179818079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_179813482_179813826_179814041_179814648_179814766_179815702_179815827_179816101_179816189_179816657_179816740_179816952_179817075_179817390_179817549_179817646_179817750_179817866
ENSMUSG00000039041.16_179813388_179818079_3	chr2	+	1523	9	NIC	ENSMUSG00000039041.16	novel	1535	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	1931	junction_6	165.514349831064	4409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATGGTCTGGGCCTGTGTT	NA	False	NA	2	True	AATAAA	-22	NA	179813387	179818079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_179813482_179813826_179814041_179814648_179814766_179815702_179815827_179816101_179816189_179816657_179816740_179816952_179817186_179817390_179817750_179817866
ENSMUSG00000039047.18_152419750_152491290_1	chr3	+	1351	11	FSM	ENSMUSG00000039047.18	ENSMUST00000159899.8	4737	11	13	3373	0	0	multi-exon	FALSE	canonical	3	317	junction_8	39.6252444787411	675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTAAAACATAATATTGTT	3970	False	NA	12	True	AAGAAA	-33	NA	152419749	152491290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_152419865_152422698_152422753_152428121_152428214_152443822_152443959_152445765_152445878_152448125_152448223_152450081_152450200_152450350_152450462_152453237_152453411_152472075_152472161_152491032
ENSMUSG00000039047.18_152419750_152491485_1	chr3	+	1546	11	FSM	ENSMUSG00000039047.18	ENSMUST00000159899.8	4737	11	13	3178	0	0	multi-exon	FALSE	canonical	3	317	junction_8	39.6252444787411	1324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGGTTTGTGTGTGCTGTC	3970	False	NA	33	True	AGTAAA	-37	NA	152419749	152491485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_152419865_152422698_152422753_152428121_152428214_152443822_152443959_152445765_152445878_152448125_152448223_152450081_152450200_152450350_152450462_152453237_152453411_152472075_152472161_152491032
ENSMUSG00000039048.16_35115504_35122242_1	chr9	-	2180	11	FSM	ENSMUSG00000039048.16	ENSMUST00000127996.8	2289	11	109	0	0	0	multi-exon	FALSE	canonical	3	179	junction_9	18.9747200242849	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	35122242	35115503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121240_35121462_35122102
ENSMUSG00000039055.5_94535822_94544545_1	chr11	-	2256	10	NNC	ENSMUSG00000039055.5	novel	2444	9	NA	NA	-48	0	at_least_one_novel_splicesite	TRUE	canonical	3	39	junction_7	78.9567782999419	382	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGAGCTTGGAGGAAGAC	4648	False	NA	-5	True	AATAAA	-18	NA	94544545	94535821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_94536432_94536641_94536832_94538116_94538233_94538453_94538575_94538769_94538889_94538968_94539056_94540288_94540346_94540833_94540965_94541048_94541850_94544521
ENSMUSG00000039055.5_94544602_94550915_1	chr11	-	741	4	NNC	ENSMUSG00000039055.5	novel	2444	9	NA	NA	-6125	-3200	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8717	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAAGTCTGCTTCCGCTAC	NA	False	NA	NA	False	NA	NA	NA	94550915	94544601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_94544668_94547318_94547445_94547808_94547877_94550434
ENSMUSG00000039055.5_94544602_94550915_2	chr11	-	747	4	NIC	ENSMUSG00000039055.5	novel	2444	9	NA	NA	-6125	-3200	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	9093	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAAGTCTGCTTCCGCTAC	NA	False	NA	NA	False	NA	NA	NA	94550915	94544601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_94544668_94547312_94547445_94547808_94547877_94550434
ENSMUSG00000039065.12_31602264_31617681_2	chr15	+	697	2	FSM	ENSMUSG00000039065.12	ENSMUST00000160146.2	4655	2	266	3692	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAACCGTGACAAGGAGTG	115	False	NA	27	True	ATTAAA	-27	NA	31602263	31617681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_31602296_31617016
ENSMUSG00000039065.12_31602264_31617681_3	chr15	+	1290	6	FSM	ENSMUSG00000039065.12	ENSMUST00000161061.3	2364	6	0	1074	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.3490087672889	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAACCGTGACAAGGAGTG	115	False	NA	27	True	ATTAAA	-27	NA	31602263	31617681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_31602296_31603594_31603721_31606056_31606335_31608241_31608380_31609711_31609763_31617016
ENSMUSG00000039067.6_108307013_108315090_1	chr8	-	1573	7	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	944.196954500961	18222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGTGTCCTAGTGGTT	NA	False	NA	-6	True	ATTAAA	-14	NA	108315090	108307012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313339_108314902
ENSMUSG00000039067.6_108307013_108315090_2	chr8	-	1565	7	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	944.196954500961	18540	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGTGTCCTAGTGGTT	NA	False	NA	-6	True	ATTAAA	-14	NA	108315090	108307012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313339_108314910
ENSMUSG00000039067.6_108307013_108315090_5	chr8	-	1566	7	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	979.306968671667	17532	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGTGTCCTAGTGGTT	NA	False	NA	-6	True	ATTAAA	-14	NA	108315090	108307012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313265_108313349_108314910
ENSMUSG00000039067.6_108307470_108315090_1	chr8	-	1116	7	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	0	-457	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	944.196954500961	2250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGTGTGCCACTAGGAGG	NA	False	NA	0	True	ATTAAA	-16	NA	108315090	108307469	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313339_108314902
ENSMUSG00000039067.6_108307470_108315090_2	chr8	-	1108	7	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	0	-457	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	944.196954500961	2541	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGTGTGCCACTAGGAGG	NA	False	NA	0	True	ATTAAA	-16	NA	108315090	108307469	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313339_108314910
ENSMUSG00000039067.6_108307592_108315090_1	chr8	-	996	7	FSM	ENSMUSG00000039067.6	ENSMUST00000044106.6	1581	7	6	579	0	-579	multi-exon	FALSE	canonical	3	2367	junction_5	170.70409745782	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGGAGAGAAAAGACGACA	NA	False	NA	-19	True	NA	NA	NA	108315090	108307591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
ENSMUSG00000039067.6_108313032_108315090_1	chr8	-	497	2	ISM	ENSMUSG00000039067.6	ENSMUST00000044106.6	1581	7	6	6019	0	1199	5prime_fragment	FALSE	canonical	3	2808	junction_1	0	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCCCCCCAAAAAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	108315090	108313031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_108313349_108314910
ENSMUSG00000039069.20_179712381_179727695_1	chr2	+	1593	10	NNC	ENSMUSG00000039069.20	novel	2224	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	71.7652207798474	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712380	179727695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_179712409_179713586_179713680_179719796_179719936_179720411_179720617_179723878_179724031_179725137_179725254_179725856_179726076_179726243_179726383_179727172_179727591_179727611
ENSMUSG00000039069.20_179712381_179727695_2	chr2	+	1683	11	NNC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	61	junction_10	48.6041150521229	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712380	179727695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_179712409_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172_179727591_179727611
ENSMUSG00000039099.8_79422094_79435698_1	chr7	+	824	5	NIC	ENSMUSG00000039099.8	novel	2285	18	NA	NA	29183	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	5.09901951359278	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGTGCGGTTCATCCTT	NA	False	NA	1	True	AATAAA	-16	NA	79422093	79435698	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_79422269_79425259_79425324_79426377_79426535_79426860_79427054_79435463
ENSMUSG00000039105.7_63463009_63468464_1	chr4	+	612	3	FSM	ENSMUSG00000039105.7	ENSMUST00000035301.7	1135	3	0	523	0	-523	multi-exon	FALSE	canonical	3	4249	junction_2	22.5	23206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGTAGGACCCTTCA	NA	False	NA	33	True	ATTAAA	-12	NA	63463008	63468464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_63463237_63466821_63466923_63468181
ENSMUSG00000039105.7_63463009_63468464_2	chr4	+	607	3	NNC	ENSMUSG00000039105.7	novel	1135	3	NA	NA	0	-523	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2124.5	21494	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGTAGGACCCTTCA	NA	False	NA	33	True	ATTAAA	-12	NA	63463008	63468464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_63463237_63466826_63466923_63468181
ENSMUSG00000039105.7_63463009_63468521_1	chr4	+	669	3	FSM	ENSMUSG00000039105.7	ENSMUST00000035301.7	1135	3	0	466	0	-466	multi-exon	FALSE	canonical	3	4249	junction_2	22.5	24134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTATGTACCTGAAGTTT	NA	False	NA	90	True	NA	NA	NA	63463008	63468521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_63463237_63466821_63466923_63468181
ENSMUSG00000039126.11_17114130_17160443_1	chr19	+	538	4	NNC	ENSMUSG00000039126.11	novel	1803	9	NA	NA	0	-10724	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	44.3045019031801	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTCCTGTCTGTTATT	NA	False	NA	NA	False	NA	NA	NA	17114129	17160443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_17114256_17145626_17145707_17156153_17156355_17160312
ENSMUSG00000039126.11_17114130_17185856_1	chr19	+	991	7	NIC	ENSMUSG00000039126.11	novel	1803	9	NA	NA	0	-1639	combination_of_known_splicesites	FALSE	canonical	3	21	junction_3	26.0560293726167	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTATTCTTTCAGATCCT	NA	False	NA	14	True	AATAAA	-26	NA	17114129	17185856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_17114256_17145626_17145707_17156153_17156355_17176476_17176580_17177144_17177277_17179005_17179093_17185594
ENSMUSG00000039128.14_5799476_5849662_1	chr2	-	1141	12	NNC	ENSMUSG00000039128.14	novel	1827	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	320.522971417981	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGCCTACTGTGATGG	NA	False	NA	-7	True	AATAAA	-15	NA	5849662	5799475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_5799692_5800359_5800498_5803171_5803301_5809694_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
ENSMUSG00000039128.14_5799476_5849770_1	chr2	-	1246	13	NNC	ENSMUSG00000039128.14	novel	1827	13	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	2	42	junction_1	297.205912065468	7513	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGCCTACTGTGATGG	NA	False	NA	-7	True	AATAAA	-15	NA	5849770	5799475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_5799687_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
ENSMUSG00000039128.14_5799476_5849770_2	chr2	-	1241	12	NNC	ENSMUSG00000039128.14	novel	1827	13	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	321.946943937575	2636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGCCTACTGTGATGG	NA	False	NA	-7	True	AATAAA	-15	NA	5849770	5799475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5838443_5838525_5846763_5846836_5849645
ENSMUSG00000039128.14_5799476_5849770_3	chr2	-	1251	13	FSM	ENSMUSG00000039128.14	ENSMUST00000043864.9	1827	13	205	371	-18	0	multi-exon	FALSE	canonical	3	980	junction_5	82.7531050105607	8584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGCCTACTGTGATGG	NA	False	NA	-7	True	AATAAA	-15	NA	5849770	5799475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
ENSMUSG00000039128.14_5799476_5849770_4	chr2	-	1249	12	NNC	ENSMUSG00000039128.14	novel	1827	13	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	320.522971417981	5346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGCCTACTGTGATGG	NA	False	NA	-7	True	AATAAA	-15	NA	5849770	5799475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_5799692_5800359_5800498_5803171_5803301_5809694_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
ENSMUSG00000039128.14_5799476_5849770_5	chr2	-	1239	12	NNC	ENSMUSG00000039128.14	novel	1827	13	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	321.946943937575	3222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGCCTACTGTGATGG	NA	False	NA	-7	True	AATAAA	-15	NA	5849770	5799475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5838445_5838525_5846763_5846836_5849645
ENSMUSG00000039128.14_5799476_5849770_6	chr2	-	1218	12	NIC	ENSMUSG00000039128.14	novel	1827	13	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	91	junction_9	296.801433468727	1606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGCCTACTGTGATGG	NA	False	NA	-7	True	AATAAA	-15	NA	5849770	5799475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5838466_5838525_5846763_5846836_5849645
ENSMUSG00000039128.14_5814366_5849770_1	chr2	-	1004	8	NIC	ENSMUSG00000039128.14	novel	600	7	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	373.173538445478	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTCATCATTGCTTTTTA	NA	False	NA	2	True	AATACA	-18	NA	5849770	5814365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_5814830_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
ENSMUSG00000039130.19_30366379_30391004_1	chr6	-	1804	10	NNC	ENSMUSG00000039130.19	novel	1824	10	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	426.035470615091	1318	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGCTAGAGAATTGTTTT	9	True	NA	-7	True	AATAAA	-18	NA	30391004	30366378	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_30366745_30370263_30370471_30372736_30372950_30373241_30373483_30374763_30374919_30375937_30376066_30381779_30381859_30382535_30382690_30387419_30387532_30390855
ENSMUSG00000039131.16_151799478_151871552_1	chr3	-	1279	6	FSM	ENSMUSG00000039131.16	ENSMUST00000046614.10	1596	6	315	2	-165	0	multi-exon	FALSE	canonical	3	17	junction_3	6.40624695121879	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTTTGTGGGTATTTTTC	NA	False	NA	NA	False	CATAAA	-15	NA	151871552	151799477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_151799933_151808255_151808338_151813577_151813685_151833672_151833854_151843209_151843396_151871284
ENSMUSG00000039131.16_151799519_151871552_1	chr3	-	1238	6	FSM	ENSMUSG00000039131.16	ENSMUST00000046614.10	1596	6	315	43	-165	0	multi-exon	FALSE	canonical	3	17	junction_3	6.40624695121879	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTACCCACGGCTCTTTCC	NA	False	NA	NA	False	TTTAAA	-44	NA	151871552	151799518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_151799933_151808255_151808338_151813577_151813685_151833672_151833854_151843209_151843396_151871284
ENSMUSG00000039138.2_179056729_179060717_1	chr2	+	1718	3	NNC	ENSMUSG00000039138.2	novel	737	3	NA	NA	0	2042	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	26.5	95	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	179056728	179060717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_179056894_179057552_179057714_179059325
ENSMUSG00000039163.11_117893590_117979129_1	chr9	-	1053	4	FSM	ENSMUSG00000039163.11	ENSMUST00000044220.11	1169	4	116	0	102	0	multi-exon	TRUE	canonical	3	173	junction_1	9.03081145609604	2814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGGAAGGCAAGATTTAAC	NA	False	NA	NA	False	ATTAAA	-17	NA	117979129	117893589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_117894417_117904189_117904281_117944407_117944498_117979084
ENSMUSG00000039163.11_117894163_117979129_1	chr9	-	480	4	FSM	ENSMUSG00000039163.11	ENSMUST00000044220.11	1169	4	116	573	102	0	multi-exon	FALSE	canonical	3	173	junction_1	9.03081145609604	2462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAGAGTTCTGATTTAT	NA	False	NA	-7	True	AATAAA	-13	NA	117979129	117894162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_117894417_117904189_117904281_117944407_117944498_117979084
ENSMUSG00000039163.11_117894163_117979129_2	chr9	-	475	4	NNC	ENSMUSG00000039163.11	novel	1169	4	NA	NA	102	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	86.2644512853096	501	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAGAGTTCTGATTTAT	NA	False	NA	-7	True	AATAAA	-13	NA	117979129	117894162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_117894417_117904189_117904281_117944407_117944493_117979084
ENSMUSG00000039163.11_117894163_117979231_1	chr9	-	582	4	FSM	ENSMUSG00000039163.11	ENSMUST00000044220.11	1169	4	14	573	0	0	multi-exon	FALSE	canonical	3	173	junction_1	9.03081145609604	2955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAGAGTTCTGATTTAT	NA	False	NA	-7	True	AATAAA	-13	NA	117979231	117894162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_117894417_117904189_117904281_117944407_117944498_117979084
ENSMUSG00000039168.16_31224601_31274487_1	chr15	+	1414	4	FSM	ENSMUSG00000039168.16	ENSMUST00000044524.16	1555	4	141	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	1.69967317119759	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTCTTACGGTTCAG	132	False	NA	21	True	AATAAA	-21	NA	31224600	31274487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_31224730_31235918_31236016_31272534_31272578_31273342
ENSMUSG00000039176.18_79099129_79101948_1	chr7	-	1290	5	ISM	ENSMUSG00000039176.18	ENSMUST00000149444.8	4247	23	13980	-182	-120	0	3prime_fragment	FALSE	canonical	3	269	junction_4	57.974132162543	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCTACTGATATTATTT	NA	False	NA	-6	True	TATAAA	-20	NA	79101948	79099128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_79099786_79100232_79100394_79101289_79101499_79101607_79101777_79101854
ENSMUSG00000039182.7_14804862_14812788_1	chr13	+	1912	2	FSM	ENSMUSG00000039182.7	ENSMUST00000178289.3	2035	2	123	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCCTGTTTTTCATTGT	NA	False	NA	10	True	ATTAAA	-17	NA	14804861	14812788	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_14804870_14810884
ENSMUSG00000039182.7_14804862_14812788_2	chr13	+	1992	2	FSM	ENSMUSG00000039182.7	ENSMUST00000038690.6	2914	2	29	893	0	0	multi-exon	FALSE	canonical	3	129	junction_1	0	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCCTGTTTTTCATTGT	NA	False	NA	10	True	ATTAAA	-17	NA	14804861	14812788	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_14804950_14810884
ENSMUSG00000039183.7_25101593_25105307_1	chr17	-	1393	7	NIC	ENSMUSG00000039183.7	novel	1427	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_6	244.594051440341	1127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTGGTCAAGGTGTCT	NA	False	NA	-13	True	AGTAAA	-17	NA	25105307	25101592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105264
ENSMUSG00000039187.17_79042060_79049399_1	chr7	+	699	3	ISM	ENSMUSG00000039187.17	ENSMUST00000118959.8	1301	10	4	9931	0	-2235	5prime_fragment	FALSE	canonical	3	350	junction_1	10.5	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTATTTATTTATTTAT	NA	False	NA	NA	False	ATTAAA	-6	NA	79042059	79049399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_79042140_79045640_79045744_79048883
ENSMUSG00000039197.11_21102679_21368778_1	chr14	+	884	8	NNC	ENSMUSG00000039197.11	novel	1782	11	NA	NA	0	-952	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	132.803675877329	141	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATAATCTATTTTACTG	NA	False	NA	NA	False	AATAAA	-18	NA	21102678	21368778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_21102769_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21368645
ENSMUSG00000039197.11_21102679_21376861_1	chr14	+	953	8	NIC	ENSMUSG00000039197.11	novel	1782	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_7	129.691313258421	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGTTCTTCCCAACTA	NA	False	NA	NA	False	ATTAAA	-16	NA	21102678	21376861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_21102769_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21376659
ENSMUSG00000039197.11_21102679_21498633_1	chr14	+	1743	10	NNC	ENSMUSG00000039197.11	novel	1782	11	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	120.449569386661	1776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGATTTTTTTTCTGTCTTG	NA	False	NA	12	True	AATAAA	-15	NA	21102678	21498633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_21102769_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368290_21431570_21431686_21473570_21473658_21497881
ENSMUSG00000039197.11_21126220_21376861_1	chr14	+	1033	8	NIC	ENSMUSG00000039197.11	novel	1818	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_7	159.195938826264	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGTTCTTCCCAACTA	NA	False	NA	NA	False	ATTAAA	-16	NA	21126219	21376861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_21126390_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21376659
ENSMUSG00000039200.17_10010811_10031862_2	chr16	+	1007	7	NNC	ENSMUSG00000039200.17	novel	2166	6	NA	NA	0	-233	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_6	44.8803966114383	66	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTTCGTGTTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	10010810	10031862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10031603
ENSMUSG00000039200.17_10010811_10060915_1	chr16	+	2543	11	FSM	ENSMUSG00000039200.17	ENSMUST00000044005.14	2778	11	235	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	27.1632104140877	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTTTACTGTCTTTTA	NA	False	NA	7	True	AATAAA	-15	NA	10010810	10060915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424_10058511_10059409
ENSMUSG00000039200.17_10010811_10070304_1	chr16	+	2167	11	NIC	ENSMUSG00000039200.17	novel	2778	11	NA	NA	0	962	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	41.4305442880009	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAGTGGCATTTTTCAA	NA	False	NA	10	True	ATTAAA	-15	NA	10010810	10070304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10065308_10065462_10069241
ENSMUSG00000039201.11_8020722_8042163_1	chrX	-	2380	6	FSM	ENSMUSG00000039201.11	ENSMUST00000239441.2	2648	6	257	11	-33	0	multi-exon	FALSE	canonical	3	121	junction_4	11.0018180315801	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCACTGTGGTATGTGTAT	NA	False	NA	-18	True	NA	NA	NA	8042163	8020721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_8022306_8022554_8022744_8022889_8023018_8038976_8039132_8040439_8040550_8041949
ENSMUSG00000039205.17_32266388_32268311_1	chr2	+	580	4	ISM	ENSMUSG00000039205.17	ENSMUST00000125818.2	996	7	887	1927	887	0	internal_fragment	FALSE	canonical	3	84	junction_3	4.78423336480244	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTCCCCACCAGCACTG	NA	False	NA	8	True	AATAAA	-19	NA	32266387	32268311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_32266440_32267304_32267375_32267520_32267643_32267975
ENSMUSG00000039209.13_9988090_9992494_1	chr16	+	511	3	NNC	ENSMUSG00000039209.13	novel	550	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	248.5	4156	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTCTGTGTTACAACTT	NA	False	NA	29	True	AATAAA	-29	NA	9988089	9992494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_9988174_9988278_9988356_9992144
ENSMUSG00000039209.13_9988090_9992494_2	chr16	+	616	2	NIC	ENSMUSG00000039209.13	novel	550	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	497	junction_1	0	3085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTCTGTGTTACAACTT	NA	False	NA	29	True	AATAAA	-29	NA	9988089	9992494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_9988356_9992144
ENSMUSG00000039209.13_9988090_9992494_3	chr16	+	514	3	NNC	ENSMUSG00000039209.13	novel	550	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	248.5	4671	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTCTGTGTTACAACTT	NA	False	NA	29	True	AATAAA	-29	NA	9988089	9992494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_9988189_9988290_9988356_9992144
ENSMUSG00000039218.18_24022195_24028990_1	chr17	+	499	4	ISM	ENSMUSG00000039218.18	ENSMUST00000088621.11	8564	14	0	14725	0	10	5prime_fragment	FALSE	canonical	3	19	junction_1	102.568134536133	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGAAGAAAAAGAAGAAAG	NA	False	NA	33	True	NA	NA	NA	24022194	24028990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_24022373_24027039_24027148_24027327_24027493_24028942
ENSMUSG00000039218.18_24022195_24028990_2	chr17	+	770	5	ISM	ENSMUSG00000039218.18	ENSMUST00000190686.7	8864	15	34	14720	0	10	5prime_fragment	FALSE	canonical	3	209	junction_1	15.9275704361965	2287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGAAGAAAAAGAAGAAAG	NA	False	NA	33	True	NA	NA	NA	24022194	24028990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_24022373_24025905_24026177_24027039_24027148_24027327_24027493_24028942
ENSMUSG00000039218.18_24022652_24028990_1	chr17	+	912	5	NNC	ENSMUSG00000039218.18	novel	459	3	NA	NA	444	10	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	96.5673340213967	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGAAGAAAAAGAAGAAAG	NA	False	NA	33	True	NA	NA	NA	24022651	24028990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_24022972_24025905_24026177_24027039_24027148_24027327_24027493_24028942
ENSMUSG00000039218.18_24043714_24048146_1	chr17	+	571	4	NIC	ENSMUSG00000039218.18	novel	8564	14	NA	NA	1215	4431	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	73197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCCCCGCCCGCCCCGCCC	5471	False	NA	NA	False	NA	NA	NA	24043713	24048146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_24043954_24046441_24046548_24047817_24047953_24048056
ENSMUSG00000039218.18_24043714_24048146_2	chr17	+	541	4	NIC	ENSMUSG00000039218.18	novel	8564	14	NA	NA	1215	4431	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	20448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCCCCGCCCGCCCCGCCC	5471	False	NA	NA	False	NA	NA	NA	24043713	24048146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_24043954_24046441_24046548_24047817_24047923_24048056
ENSMUSG00000039219.19_14228263_14237998_1	chr13	+	1285	5	NIC	ENSMUSG00000039219.19	novel	571	5	NA	NA	-9554	-56806	intron_retention	TRUE	non_canonical	0	0	junction_1	0	723	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCAGGCGTCGTATGCCAC	NA	False	NA	NA	False	AAGAAA	-22	NA	14228262	14237998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_14229041_14229734_14229806_14232380_14232474_14233903_14234039_14237790
ENSMUSG00000039219.19_14228433_14237998_2	chr13	+	1115	5	NIC	ENSMUSG00000039219.19	novel	571	5	NA	NA	-9384	-56806	intron_retention	FALSE	non_canonical	0	0	junction_1	0	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCAGGCGTCGTATGCCAC	NA	False	NA	NA	False	AAGAAA	-22	NA	14228432	14237998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_14229041_14229734_14229806_14232380_14232474_14233903_14234039_14237790
ENSMUSG00000039221.11_28859659_28861443_1	chr3	+	357	4	FSM	ENSMUSG00000039221.11	ENSMUST00000043867.11	552	4	74	121	0	0	multi-exon	FALSE	canonical	3	2038	junction_1	2670.46824857864	755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTCAAGATGAAGATGGTT	NA	False	NA	NA	False	NA	NA	NA	28859658	28861443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_28859693_28860648_28860742_28860885_28861008_28861335
ENSMUSG00000039221.11_28859659_28861571_1	chr3	+	509	4	NNC	ENSMUSG00000039221.11	novel	552	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	3263.12164788395	22293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGGTTCATCAGTGT	NA	False	NA	17	True	AATAAA	-22	NA	28859658	28861571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_28859693_28860651_28860742_28860858_28861008_28861335
ENSMUSG00000039221.11_28859659_28861571_2	chr3	+	626	3	NIC	ENSMUSG00000039221.11	novel	552	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	3779	junction_1	2106.5	6152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGGTTCATCAGTGT	NA	False	NA	17	True	AATAAA	-22	NA	28859658	28861571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_28859693_28860651_28861008_28861335
ENSMUSG00000039221.11_28859659_28861571_3	chr3	+	473	4	NNC	ENSMUSG00000039221.11	novel	552	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3627.89418564299	56319	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGGTTCATCAGTGT	NA	False	NA	17	True	AATAAA	-22	NA	28859658	28861571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_28859693_28860660_28860742_28860885_28861008_28861335
ENSMUSG00000039221.11_28859659_28861571_4	chr3	+	523	4	NIC	ENSMUSG00000039221.11	novel	552	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	3614.25809199558	36534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGGTTCATCAGTGT	NA	False	NA	17	True	AATAAA	-22	NA	28859658	28861571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_28859731_28860648_28860742_28860885_28861008_28861335
ENSMUSG00000039221.11_28859659_28861571_5	chr3	+	587	4	NIC	ENSMUSG00000039221.11	novel	552	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_1	3654.53444367405	7779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGGTTCATCAGTGT	NA	False	NA	17	True	AATAAA	-22	NA	28859658	28861571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_28859731_28860651_28860742_28860818_28861008_28861335
ENSMUSG00000039231.19_7917830_7939031_1	chrX	-	942	3	NIC	ENSMUSG00000039231.19	novel	1166	3	NA	NA	1466	9580	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTGAGGGGAGAGTTCT	8821	False	NA	NA	False	NA	NA	NA	7939031	7917829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_7917897_7936874_7937304_7938585
ENSMUSG00000039231.19_7917830_7939198_1	chrX	-	1109	3	NIC	ENSMUSG00000039231.19	novel	1166	3	NA	NA	1299	9580	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTGAGGGGAGAGTTCT	8654	False	NA	NA	False	NA	NA	NA	7939198	7917829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_7917897_7936874_7937304_7938585
ENSMUSG00000039231.19_7917830_7939365_1	chrX	-	1276	3	NIC	ENSMUSG00000039231.19	novel	1166	3	NA	NA	1132	9580	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTGAGGGGAGAGTTCT	8487	False	NA	NA	False	NA	NA	NA	7939365	7917829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_7917897_7936874_7937304_7938585
ENSMUSG00000039231.19_7917830_7941112_1	chrX	-	866	4	NIC	ENSMUSG00000039231.19	novel	1166	3	NA	NA	-113	9580	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTGAGGGGAGAGTTCT	9767	False	NA	NA	False	NA	NA	NA	7941112	7917829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_7917897_7926454_7926526_7936874_7937304_7940813
ENSMUSG00000039231.19_7917830_7941239_1	chrX	-	993	4	NIC	ENSMUSG00000039231.19	novel	1166	3	NA	NA	-240	9580	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTGAGGGGAGAGTTCT	9640	False	NA	NA	False	NA	NA	NA	7941239	7917829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_7917897_7926454_7926526_7936874_7937304_7940813
ENSMUSG00000039231.19_7927674_7940858_1	chrX	-	2711	6	FSM	ENSMUSG00000039231.19	ENSMUST00000115638.10	3116	6	141	264	2	0	multi-exon	FALSE	canonical	3	87	junction_5	11.3947356265953	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCTTGAGATTTGGGAG	6994	False	NA	NA	False	NA	NA	NA	7940858	7927673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_7929223_7929934_7930065_7930149_7930297_7936826_7937490_7938561_7938708_7940782
ENSMUSG00000039233.13_14192821_14214223_1	chr13	-	1969	4	FSM	ENSMUSG00000039233.13	ENSMUST00000160776.2	909	4	-21	-1039	0	1039	multi-exon	FALSE	canonical	3	140	junction_1	12.4988888395018	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTTGGTCATGGTGT	NA	False	NA	2	True	NA	NA	NA	14214223	14192820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_14194473_14202282_14202368_14203860_14203992_14214122
ENSMUSG00000039242.11_14129210_14172086_1	chr13	+	2163	12	FSM	ENSMUSG00000039242.11	ENSMUST00000099747.5	3892	12	156	1573	0	0	multi-exon	TRUE	canonical	3	178	junction_5	19.409889274617	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATATCATGTTTTCTTTTA	NA	False	NA	NA	False	ACTAAA	-37	NA	14129209	14172086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477
ENSMUSG00000039242.11_14129210_14173659_1	chr13	+	3736	12	FSM	ENSMUSG00000039242.11	ENSMUST00000099747.5	3892	12	156	0	0	0	multi-exon	FALSE	canonical	3	178	junction_5	19.409889274617	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCCTTTTCCTATTTTTG	NA	False	NA	NA	False	AATAAA	-22	NA	14129209	14173659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477
ENSMUSG00000039242.11_14172538_14214223_1	chr13	+	1843	17	NIC	ENSMUSG00000039242.11	novel	3892	12	NA	NA	2799	40535	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGCAGAGGAAGTGATGAAAA	2506	False	NA	NA	False	NA	NA	NA	14172537	14214223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178127_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
ENSMUSG00000039242.11_14172538_14214223_2	chr13	+	1758	16	NIC	ENSMUSG00000039242.11	novel	3892	12	NA	NA	2799	40535	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGCAGAGGAAGTGATGAAAA	2506	False	NA	NA	False	NA	NA	NA	14172537	14214223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178127_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14203860_14203992_14214122
ENSMUSG00000039246.9_185820077_185849485_1	chr1	-	1407	5	FSM	ENSMUSG00000039246.9	ENSMUST00000045388.8	1578	5	22	149	0	-149	multi-exon	FALSE	canonical	3	108	junction_3	16.3477827242718	987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACTGACTTTCAGATTTA	NA	False	NA	-11	True	AATAAA	-15	NA	185849485	185820076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_185820966_185821640_185821757_185832389_185832560_185846460_185846561_185849353
ENSMUSG00000039246.9_185820567_185849485_1	chr1	-	917	5	FSM	ENSMUSG00000039246.9	ENSMUST00000045388.8	1578	5	22	639	0	163	multi-exon	FALSE	canonical	3	108	junction_3	16.3477827242718	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGTAGTGAATGTCAACT	NA	False	NA	NA	False	NA	NA	NA	185849485	185820566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_185820966_185821640_185821757_185832389_185832560_185846460_185846561_185849353
ENSMUSG00000039254.17_32145014_32150087_1	chr2	+	1921	7	NIC	ENSMUSG00000039254.17	novel	2918	20	NA	NA	3729	5070	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGCTGTGCGCATCGCTT	NA	False	NA	NA	False	NA	NA	NA	32145013	32150087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_32146224_32146629_32146679_32148101_32148197_32148288_32148432_32148582_32148680_32149591_32149752_32149920
ENSMUSG00000039263.17_173952142_173964495_1	chr2	+	2099	12	FSM	ENSMUSG00000039263.17	ENSMUST00000044415.16	2467	12	0	368	0	0	multi-exon	FALSE	canonical	3	214	junction_9	24.2330284822489	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTCTCCGCTCACTTTT	NA	False	NA	8	True	ATTAAA	-17	NA	173952141	173964495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_173952366_173952869_173953056_173953406_173953578_173955689_173955780_173956189_173956272_173957843_173957987_173961185_173961264_173962019_173962121_173962336_173962461_173962740_173962918_173963271_173963383_173963883
ENSMUSG00000039263.17_173961208_173964495_1	chr2	+	1181	6	ISM	ENSMUSG00000039263.17	ENSMUST00000044415.16	2467	12	9066	368	7842	0	3prime_fragment	FALSE	canonical	3	214	junction_3	24.457309745759	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTCTCCGCTCACTTTT	NA	False	NA	8	True	ATTAAA	-17	NA	173961207	173964495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_173961264_173962019_173962121_173962336_173962461_173962740_173962918_173963271_173963383_173963883
ENSMUSG00000039263.17_173962636_173964495_1	chr2	+	1005	3	ISM	ENSMUSG00000039263.17	ENSMUST00000153957.8	2052	10	9663	0	9270	0	3prime_fragment	FALSE	canonical	3	269	junction_2	7.5	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTCTCCGCTCACTTTT	NA	False	NA	8	True	ATTAAA	-17	NA	173962635	173964495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_173962918_173963271_173963383_173963883
ENSMUSG00000039278.11_7788581_7789474_1	chrX	+	501	2	ISM	ENSMUSG00000039278.11	ENSMUST00000041096.4	2193	3	2520	1175	2520	-1175	3prime_fragment	FALSE	canonical	3	96	junction_1	0	183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGTCTGAGCGCCCT	NA	False	NA	5	True	AATAAA	-15	NA	7788580	7789474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_7788754_7789146
ENSMUSG00000039285.13_117869647_117880792_1	chr9	+	1198	5	ISM	ENSMUSG00000039285.13	ENSMUST00000134433.8	2499	7	0	8760	0	65	5prime_fragment	FALSE	canonical	3	140	junction_4	16.3783393541592	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTATATTGGGTTGTGTC	9665	False	NA	NA	False	AATATA	-20	NA	117869646	117880792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_117870027_117876480_117876702_117878377_117878504_117878964_117879065_117880421
ENSMUSG00000039318.13_184999096_185016382_1	chr1	+	1552	11	ISM	ENSMUSG00000039318.13	ENSMUST00000069652.8	7052	35	62782	2574	3057	0	3prime_fragment	FALSE	canonical	3	69	junction_4	8.59127464349732	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAATGCAGATGCTTTATT	NA	False	NA	88	True	TATAAA	-19	NA	184999095	185016382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_184999272_184999369_184999477_185003630_185003698_185004768_185004840_185008108_185008145_185009343_185009419_185010344_185010564_185013847_185013938_185014494_185014708_185015578_185015738_185016043
ENSMUSG00000039323.19_72863006_72891633_1	chr1	+	895	4	NNC	ENSMUSG00000039323.19	novel	906	3	NA	NA	-656	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	1672.39096970641	7005	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	634	False	NA	18	True	AATAAA	-3	NA	72863005	72891633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_72863056_72888244_72888472_72888722_72888864_72891156
ENSMUSG00000039323.19_72865946_72891633_1	chr1	+	898	4	NNC	ENSMUSG00000039323.19	novel	906	3	NA	NA	1465	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1686.01324629039	6901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	2038	False	NA	18	True	AATAAA	-3	NA	72865945	72891633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_72865999_72888244_72888472_72888722_72888864_72891156
ENSMUSG00000039323.19_72888312_72891633_1	chr1	+	766	3	NNC	ENSMUSG00000039323.19	novel	1307	4	NA	NA	454	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1868.5	2736	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	NA	False	NA	18	True	AATAAA	-3	NA	72888311	72891633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_72888472_72888734_72888864_72891156
ENSMUSG00000039323.19_72888312_72891633_2	chr1	+	776	3	NNC	ENSMUSG00000039323.19	novel	1307	4	NA	NA	454	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1695.5	3664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	NA	False	NA	18	True	AATAAA	-3	NA	72888311	72891633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_72888472_72888722_72888868_72891162
ENSMUSG00000039323.19_72888568_72891633_1	chr1	+	773	2	ISM	ENSMUSG00000039323.19	ENSMUST00000155703.2	906	3	710	-326	710	0	3prime_fragment	FALSE	canonical	3	3737	junction_1	0	2319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	NA	False	NA	18	True	AATAAA	-3	NA	72888567	72891633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_72888864_72891156
ENSMUSG00000039330.6_5440077_5450416_1	chr19	-	842	6	ISM	ENSMUSG00000039330.6	ENSMUST00000235569.2	1726	8	2138	0	2138	0	3prime_fragment	TRUE	canonical	3	37	junction_4	4.9152822909778	222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTACAGTGTGAGACTTCT	7122	False	NA	NA	False	ATTAAA	-13	NA	5450416	5440076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_5440226_5440636_5440756_5440941_5441042_5444310_5444482_5449940_5450089_5450261
ENSMUSG00000039337.4_121007041_121009083_1	chr11	-	1626	3	FSM	ENSMUSG00000039337.4	ENSMUST00000039146.4	2046	3	420	0	420	0	multi-exon	FALSE	canonical	3	61	junction_1	13.5	272	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTTGCAGTCTCCTCAT	NA	False	NA	0	True	AATAAA	-19	NA	121009083	121007040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_121008523_121008652_121008727_121009013
ENSMUSG00000039345.17_8288655_8292154_1	chr16	+	535	2	ISM	ENSMUSG00000039345.17	ENSMUST00000046470.16	1825	11	3	16394	0	186	5prime_fragment	FALSE	canonical	3	183	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACCACTTACCATCCACC	NA	False	NA	NA	False	NA	NA	NA	8288654	8292154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_8288730_8291694
ENSMUSG00000039345.17_8288655_8308065_1	chr16	+	1339	11	FSM	ENSMUSG00000039345.17	ENSMUST00000046470.16	1825	11	3	483	0	5	multi-exon	FALSE	canonical	3	136	junction_3	20.7113495455994	516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCCCTTGAGATGCTGT	NA	False	NA	8	True	AATAAA	-17	NA	8288654	8308065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_8288730_8291694_8291831_8295830_8296194_8299990_8300032_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
ENSMUSG00000039345.17_8288655_8308065_2	chr16	+	1298	10	NIC	ENSMUSG00000039345.17	novel	1825	11	NA	NA	0	5	combination_of_known_splicesites	FALSE	canonical	3	39	junction_3	49.6680337868021	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCCCTTGAGATGCTGT	NA	False	NA	8	True	AATAAA	-17	NA	8288654	8308065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_8288730_8291694_8291831_8295830_8296194_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
ENSMUSG00000039349.6_184606032_184615204_1	chr1	-	915	2	FSM	ENSMUSG00000039349.6	ENSMUST00000048308.6	3035	2	211	1909	211	-1909	multi-exon	FALSE	canonical	3	22	junction_1	0	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTATCTCCCCCATCTCTT	NA	False	NA	2	True	AATACA	-25	NA	184615204	184606031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_184606625_184614882
ENSMUSG00000039356.16_31560746_31571362_2	chr2	+	1661	9	NNC	ENSMUSG00000039356.16	novel	1686	9	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	309.047098959042	1844	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGAGTCTCACCGCGTG	NA	False	NA	NA	False	AATAAA	-17	NA	31560745	31571362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31565917_31566679_31566749_31568462_31568640_31569869_31569992_31570501
ENSMUSG00000039356.16_31560746_31571362_3	chr2	+	1663	9	NNC	ENSMUSG00000039356.16	novel	1686	9	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	304.32455947557	1809	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGAGTCTCACCGCGTG	NA	False	NA	NA	False	AATAAA	-17	NA	31560745	31571362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565855_31565917_31566679_31566749_31568462_31568640_31569862_31569992_31570501
ENSMUSG00000039382.13_7588487_7594427_1	chrX	+	1499	11	NNC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_10	63.2250741399328	267	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGACTTGACCTCAAGG	4037	False	NA	4	True	AATAAA	-17	NA	7588486	7594427	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7594049
ENSMUSG00000039419.18_47221321_47276247_1	chr6	+	1383	4	FSM	ENSMUSG00000039419.18	ENSMUST00000199100.5	6279	4	0	4896	0	-257	multi-exon	FALSE	canonical	3	21	junction_1	8.01387685344754	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTTTGTTTTTTATTGA	NA	False	NA	3	True	AATAAA	-16	NA	47221320	47276247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_47221484_47248073_47248314_47273652_47273734_47275348
ENSMUSG00000039419.18_47221321_47276504_1	chr6	+	1640	4	FSM	ENSMUSG00000039419.18	ENSMUST00000199100.5	6279	4	0	4639	0	0	multi-exon	FALSE	canonical	3	21	junction_1	8.01387685344754	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTGTGCTTTTCTTATT	NA	False	NA	NA	False	NA	NA	NA	47221320	47276504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_47221484_47248073_47248314_47273652_47273734_47275348
ENSMUSG00000039449.15_4626978_4656917_1	chr2	-	3433	10	FSM	ENSMUSG00000039449.15	ENSMUST00000035721.14	3522	10	-20	109	0	-109	multi-exon	FALSE	canonical	3	138	junction_5	16.2305914484172	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACAACTCTATTGACTGT	NA	False	NA	-11	True	TTTAAA	-25	NA	4656917	4626977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_4629338_4638243_4638400_4640441_4640514_4640638_4640780_4641958_4642028_4643659_4643807_4648461_4648576_4650379_4650485_4653051_4653130_4656726
ENSMUSG00000039449.15_4627349_4656917_1	chr2	-	3062	10	FSM	ENSMUSG00000039449.15	ENSMUST00000035721.14	3522	10	-20	480	0	-480	multi-exon	FALSE	canonical	3	138	junction_5	16.2305914484172	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATATCATATGACATCAGT	NA	False	NA	NA	False	CATAAA	-8	NA	4656917	4627348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_4629338_4638243_4638400_4640441_4640514_4640638_4640780_4641958_4642028_4643659_4643807_4648461_4648576_4650379_4650485_4653051_4653130_4656726
ENSMUSG00000039452.7_65967504_65973905_1	chr9	-	787	4	NIC	ENSMUSG00000039452.7	novel	2543	7	NA	NA	3092	4954	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	793	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGTGGACGCGCAGCGTG	NA	False	NA	NA	False	NA	NA	NA	65973905	65967503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_65967683_65970270_65970365_65972768_65972954_65973576
ENSMUSG00000039452.7_65967504_65973905_3	chr9	-	895	5	NNC	ENSMUSG00000039452.7	novel	2543	7	NA	NA	3092	4954	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	15856	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGTGGACGCGCAGCGTG	NA	False	NA	NA	False	NA	NA	NA	65973905	65967503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_65967677_65968748_65968863_65970270_65970365_65972768_65972954_65973576
ENSMUSG00000039452.7_65967504_65973905_4	chr9	-	886	5	NNC	ENSMUSG00000039452.7	novel	2543	7	NA	NA	3092	4954	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8484	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGTGGACGCGCAGCGTG	NA	False	NA	NA	False	NA	NA	NA	65973905	65967503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_65967683_65968748_65968863_65970270_65970365_65972768_65972954_65973591
ENSMUSG00000039452.7_65967504_65973905_5	chr9	-	881	5	NNC	ENSMUSG00000039452.7	novel	2543	7	NA	NA	3092	4954	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2665	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGTGGACGCGCAGCGTG	NA	False	NA	NA	False	NA	NA	NA	65973905	65967503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_65967683_65968748_65968863_65970270_65970365_65972788_65972954_65973576
ENSMUSG00000039452.7_65967504_65973905_6	chr9	-	886	5	NNC	ENSMUSG00000039452.7	novel	2543	7	NA	NA	3092	4954	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9465	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGTGGACGCGCAGCGTG	NA	False	NA	NA	False	NA	NA	NA	65973905	65967503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_65967683_65968748_65968863_65970270_65970365_65972768_65972939_65973576
ENSMUSG00000039456.11_93629145_93672965_1	chr16	+	4047	17	FSM	ENSMUSG00000039456.11	ENSMUST00000044068.10	4178	17	136	-5	0	4	multi-exon	FALSE	non_canonical	1	193	junction_4	108.324454764379	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAACTGAAAGTTATTTCC	1110	False	NA	20	True	AATAAA	-31	NA	93629144	93672965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
ENSMUSG00000039461.13_108180157_108183147_1	chr9	-	1578	3	FSM	ENSMUSG00000039461.13	ENSMUST00000192886.6	1094	3	212	-696	0	0	multi-exon	TRUE	canonical	3	19	junction_2	5	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGGTGTGGTTATTCAA	7327	False	NA	-2	True	ATTAAA	-13	NA	108183147	108180156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_108181453_108182524_108182580_108182920
ENSMUSG00000039463.15_167263641_167267133_1	chr2	+	1140	2	FSM	ENSMUSG00000039463.15	ENSMUST00000150326.2	2059	2	-2	921	0	-921	multi-exon	FALSE	canonical	3	99	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTAGTCAGGGTAGAGTA	NA	False	NA	NA	False	AATAAA	-17	NA	167263640	167267133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_167263686_167266038
ENSMUSG00000039463.15_167263641_167270914_1	chr2	+	386	3	NNC	ENSMUSG00000039463.15	novel	2055	16	NA	NA	0	2860	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	47	73	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTGGTGTAGAAATAAGTG	NA	False	NA	NA	False	ATTAAA	-13	NA	167263640	167270914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_167263686_167266038_167266218_167270752
ENSMUSG00000039463.15_167263641_167316559_1	chr2	+	2151	17	FSM	ENSMUSG00000039463.15	ENSMUST00000047815.13	4521	17	9	2361	0	3	multi-exon	TRUE	non_canonical	2	49	junction_9	20.9574531790005	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGCAGGGTTCAGCCT	NA	False	NA	NA	False	AATGAA	-15	NA	167263640	167316559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_167263686_167266038_167266218_167276701_167276783_167283048_167283108_167285368_167285453_167287425_167287528_167288421_167288457_167293126_167293271_167299246_167299386_167301568_167301675_167307260_167307378_167309604_167309688_167310883_167310996_167313301_167313523_167315353_167315501_167315947_167316096_167316210
ENSMUSG00000039470.16_40948638_40964761_1	chr8	+	1213	6	Genic_Genomic	ENSMUSG00000039470.16	novel	1547	13	NA	NA	-4854	1452	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGTCCCGCCGAGGGCGC	NA	False	NA	NA	False	NA	NA	NA	40948637	40964761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_+_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
ENSMUSG00000039470.16_40960359_40964345_1	chr8	+	758	3	Genic_Genomic	ENSMUSG00000039470.16	novel	1547	13	NA	NA	6867	1036	multi-exon	FALSE	non_canonical	0	0	junction_1	0	64	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGAAGTCCCAGGTACAAA	NA	False	NA	NA	False	NA	NA	NA	40960358	40964345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_+_40960690_40963055_40963268_40964130
ENSMUSG00000039470.16_40960359_40964761_1	chr8	+	724	3	Genic_Genomic	ENSMUSG00000039470.16	novel	1547	13	NA	NA	6867	1452	multi-exon	FALSE	non_canonical	0	0	junction_1	0	248	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGTCCCGCCGAGGGCGC	NA	False	NA	NA	False	NA	NA	NA	40960358	40964761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_+_40960690_40963055_40963268_40964580
ENSMUSG00000039480.15_34272932_34294535_1	chr10	-	951	7	FSM	ENSMUSG00000039480.15	ENSMUST00000099973.4	761	7	-58	-132	0	132	multi-exon	FALSE	canonical	2	4	junction_1	35.3714417134627	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGATGTTCAAACCCTTA	NA	False	NA	NA	False	AATAAA	-20	NA	34294535	34272931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_34273238_34274109_34274195_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
ENSMUSG00000039509.9_124626039_124641303_1	chr8	-	927	8	ISM	ENSMUSG00000039509.9	ENSMUST00000044795.8	5808	26	34701	2177	1071	-2177	3prime_fragment	FALSE	canonical	3	363	junction_7	38.0852963217876	475	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGGTCTGGATCAACCTG	NA	False	NA	-17	True	ATTAAA	-23	NA	124641303	124626038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_124626250_124629337_124629427_124631290_124631356_124632952_124633034_124634494_124634614_124636622_124636759_124638487_124638647_124641236
ENSMUSG00000039515.12_30306208_30337817_1	chr2	+	2429	10	FSM	ENSMUSG00000039515.12	ENSMUST00000042055.10	2586	10	157	0	0	0	multi-exon	FALSE	canonical	3	440	junction_4	51.3501655905104	759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTGTGTGAGACATCTTT	NA	False	NA	17	True	ATTAAA	-20	NA	30306207	30337817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_30306345_30316410_30316509_30318327_30318415_30321972_30322099_30325575_30325694_30327581_30327682_30328240_30328366_30329675_30329777_30333301_30333410_30336388
ENSMUSG00000039515.12_30331865_30337817_1	chr2	+	1663	3	FSM	ENSMUSG00000039515.12	ENSMUST00000131476.8	989	3	0	-674	0	0	multi-exon	FALSE	canonical	3	6	junction_1	219	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTGTGTGAGACATCTTT	9369	False	NA	17	True	ATTAAA	-20	NA	30331864	30337817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_30331991_30333301_30333410_30336388
ENSMUSG00000039519.7_18126435_18297502_1	chr3	-	1669	5	NIC	ENSMUSG00000039519.7	novel	2166	6	NA	NA	0	-321	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	6.28490254498827	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGGCAATCATTTCAG	NA	False	NA	NA	False	AATAAA	-22	NA	18297502	18126434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_18126918_18150686_18150894_18151367_18151959_18157864_18158002_18297251
ENSMUSG00000039531.9_33795138_33827208_1	chr10	-	1964	10	NIC	ENSMUSG00000039531.9	novel	2180	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_5	26.0687599803593	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGTTTCTTGTCTAT	NA	False	NA	-1	True	AATAAA	-20	NA	33827208	33795137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827126
ENSMUSG00000039536.17_166790193_166838185_1	chr2	-	2832	12	FSM	ENSMUSG00000039536.17	ENSMUST00000109235.8	3569	12	13	724	0	0	multi-exon	FALSE	canonical	3	104	junction_8	51.6000192196774	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTTTTGTTAATTTATT	NA	False	NA	NA	False	AATAAA	-13	NA	166838185	166790192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797033_166801942_166802042_166805348_166805515_166806498_166806638_166837953
ENSMUSG00000039536.17_166790193_166838185_2	chr2	-	2850	12	FSM	ENSMUSG00000039536.17	ENSMUST00000109238.9	2976	12	0	126	0	0	multi-exon	FALSE	canonical	3	75	junction_8	58.6274129884562	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTTTTGTTAATTTATT	NA	False	NA	NA	False	AATAAA	-13	NA	166838185	166790192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797051_166801942_166802042_166805348_166805515_166806498_166806638_166837953
ENSMUSG00000039542.17_49416348_49431437_1	chr9	-	944	4	ISM	ENSMUSG00000039542.17	ENSMUST00000166811.9	3088	18	278735	0	22893	0	3prime_fragment	FALSE	canonical	3	101	junction_3	16.0069429380573	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	49431437	49416347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_49416864_49419888_49420006_49421004_49421213_49431334
ENSMUSG00000039568.7_4692652_4697682_1	chr16	-	1344	3	FSM	ENSMUSG00000039568.7	ENSMUST00000037843.7	1851	3	497	10	-13	0	multi-exon	FALSE	canonical	3	334	junction_1	8.5	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCACCAGGCTCTGTAGT	156	False	NA	-11	True	NA	NA	NA	4697682	4692651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_4693734_4694225_4694286_4697480
ENSMUSG00000039568.7_4692652_4697744_1	chr16	-	1137	4	NNC	ENSMUSG00000039568.7	novel	1851	3	NA	NA	-75	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	161.605142932464	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCACCAGGCTCTGTAGT	94	False	NA	-11	True	NA	NA	NA	4697744	4692651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_4692968_4693236_4693734_4694225_4694286_4697480
ENSMUSG00000039599.17_20398343_20418632_1	chr14	+	1690	8	FSM	ENSMUSG00000039599.17	ENSMUST00000224721.2	4483	8	15	2778	0	497	multi-exon	FALSE	canonical	3	134	junction_7	47.5106862308097	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGAATATGTTCTTTAAT	NA	False	NA	14	True	NA	NA	NA	20398342	20418632	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20417913
ENSMUSG00000039615.10_26048038_26050741_1	chr17	-	1995	9	NIC	ENSMUSG00000039615.10	novel	1171	5	NA	NA	1152	1441	intron_retention	FALSE	non_canonical	0	0	junction_1	0	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTGCAGGCGCGCAGCACG	7939	False	NA	NA	False	NA	NA	NA	26050741	26048037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_26048138_26048213_26048313_26048457_26048507_26048579_26048677_26048758_26048828_26048915_26049036_26049112_26049181_26049273_26049409_26049483
ENSMUSG00000039615.10_26049479_26051893_1	chr17	-	1361	7	FSM	ENSMUSG00000039615.10	ENSMUST00000044911.10	1803	7	442	0	0	0	multi-exon	FALSE	canonical	3	1378	junction_3	85.5336191213724	6836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAGAAAAAAAAAATTT	6787	False	NA	NA	False	AATACA	-10	NA	26051893	26049478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051219_26051665
ENSMUSG00000039615.10_26049608_26051893_1	chr17	-	1358	6	NNC	ENSMUSG00000039615.10	novel	1408	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	73	junction_4	597.282043928997	514	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCATGTGCTGGTGCAGT	6787	False	NA	-17	True	AATAAA	-17	NA	26051893	26049607	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_26049985_26050075_26050193_26050282_26050606_26050769_26050884_26051019_26051219_26051665
ENSMUSG00000039615.10_26049608_26051893_2	chr17	-	1232	7	FSM	ENSMUSG00000039615.10	ENSMUST00000044911.10	1803	7	442	129	0	0	multi-exon	FALSE	canonical	3	1378	junction_3	85.5336191213724	6613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCATGTGCTGGTGCAGT	6787	False	NA	-17	True	AATAAA	-17	NA	26051893	26049607	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051219_26051665
ENSMUSG00000039616.11_24786935_24834632_1	chr18	+	2716	15	FSM	ENSMUSG00000039616.11	ENSMUST00000068006.9	2903	15	187	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	5.18878303533257	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGCCTGCCATTATTGAG	NA	False	NA	15	True	ATTAAA	-15	NA	24786934	24834632	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_24787125_24793046_24793137_24797073_24797141_24799066_24799709_24803621_24803699_24807287_24807488_24809616_24809734_24812442_24812869_24816185_24816349_24819683_24819763_24821994_24822120_24825574_24825681_24828930_24829070_24832909_24833015_24834442
ENSMUSG00000039623.14_142449799_142463560_1	chr5	+	2794	17	FSM	ENSMUSG00000039623.14	ENSMUST00000038699.13	3689	17	-10	905	0	3	multi-exon	FALSE	canonical	3	53	junction_8	14.9769353924626	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGGTGGCACATGCCTT	8690	False	NA	17	True	AATAAA	-22	NA	142449798	142463560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_142449891_142452012_142452148_142452244_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456083_142456148_142456312_142457957_142458140_142459662_142459806_142460128_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
ENSMUSG00000039630.11_178146695_178150258_1	chr1	-	407	3	NIC	ENSMUSG00000039630.11	novel	2640	2	NA	NA	1478	1978	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	333	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGCAACACGGGCTCCGC	NA	False	NA	NA	False	NA	NA	NA	178150258	178146694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_178146774_178149309_178149425_178150045
ENSMUSG00000039630.11_178156133_178157885_1	chr1	-	1068	3	ISM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	7477	4225	0	3298	3prime_fragment	FALSE	canonical	3	6129	junction_2	38.5	3056	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTGTCTAATGGGATC	NA	False	NA	-5	True	ATTAAA	-16	NA	178157885	178156132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_178156973_178157432_178157505_178157729
ENSMUSG00000039630.11_178156601_178157885_1	chr1	-	600	3	ISM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	7477	4693	0	2830	3prime_fragment	FALSE	canonical	3	6129	junction_2	38.5	2302	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTGTCTTTTATTAAGC	NA	False	NA	-6	True	AGTAAA	-14	NA	178157885	178156600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_178156973_178157432_178157505_178157729
ENSMUSG00000039630.11_178156880_178157885_1	chr1	-	321	3	ISM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	7477	4972	0	2551	3prime_fragment	FALSE	canonical	3	6129	junction_2	38.5	314	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCACAAGAAGTCGACTG	NA	False	NA	-9	True	AATAAA	-27	NA	178157885	178156879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_178156973_178157432_178157505_178157729
ENSMUSG00000039640.8_120375439_120379529_1	chr11	+	954	5	FSM	ENSMUSG00000039640.8	ENSMUST00000043627.8	1316	5	0	362	0	246	multi-exon	FALSE	canonical	3	1076	junction_2	33.5186515241887	6268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGTGTGTGTGCCCAG	8955	False	NA	-26	True	AATATA	-23	NA	120375438	120379529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120375595_120376068_120376256_120376481_120376569_120378922_120379061_120379143
ENSMUSG00000039640.8_120375439_120379580_1	chr11	+	1005	5	FSM	ENSMUSG00000039640.8	ENSMUST00000043627.8	1316	5	0	311	0	297	multi-exon	FALSE	canonical	3	1076	junction_2	33.5186515241887	6594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGTCCTGAACCTTG	8955	False	NA	25	True	TATAAA	-17	NA	120375438	120379580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120375595_120376068_120376256_120376481_120376569_120378922_120379061_120379143
ENSMUSG00000039670.3_120347432_120348762_2	chr11	-	681	2	FSM	ENSMUSG00000039670.3	ENSMUST00000044007.3	813	2	132	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGCAGGGGCTTTTGTGT	9	True	NA	-6	True	AATAAA	-18	NA	120348762	120347431	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120347989_120348638
ENSMUSG00000039670.3_120347432_120348894_1	chr11	-	838	2	NNC	ENSMUSG00000039670.3	novel	813	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGCAGGGGCTTTTGTGT	959	False	NA	-6	True	AATAAA	-18	NA	120348894	120347431	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_120347989_120348613
ENSMUSG00000039670.3_120347432_120348894_2	chr11	-	783	2	FSM	ENSMUSG00000039670.3	ENSMUST00000137632.2	372	2	-132	-279	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGCAGGGGCTTTTGTGT	959	False	NA	-6	True	AATAAA	-18	NA	120348894	120347431	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120347989_120348668
ENSMUSG00000039671.19_165669102_165726599_1	chr2	-	2274	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-31	0	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_1	173.946415231533	597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGCTCTCTTGTTCCGC	NA	False	NA	-20	True	AATAAA	-22	NA	165726599	165669101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165726527
ENSMUSG00000039671.19_165669102_165740936_1	chr2	-	2303	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	164.953988074912	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGCTCTCTTGTTCCGC	NA	False	NA	-20	True	AATAAA	-22	NA	165740936	165669101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
ENSMUSG00000039671.19_165669102_165740936_2	chr2	-	2378	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	166.859667865936	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGCTCTCTTGTTCCGC	NA	False	NA	-20	True	AATAAA	-22	NA	165740936	165669101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165740835
ENSMUSG00000039682.13_45650716_45652550_1	chr5	+	231	2	ISM	ENSMUSG00000039682.13	ENSMUST00000137699.3	838	6	-130	5537	0	-5537	5prime_fragment	FALSE	canonical	3	2522	junction_1	0	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCACAATTTACAAGTGCG	NA	False	NA	NA	False	NA	NA	NA	45650715	45652550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_45650904_45652507
ENSMUSG00000039682.13_45650716_45658308_1	chr5	+	1189	6	FSM	ENSMUSG00000039682.13	ENSMUST00000137699.3	838	6	-130	-221	0	221	multi-exon	FALSE	canonical	3	2266	junction_5	195.982039993465	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGTAGTGTTTTATCTC	NA	False	NA	NA	False	NA	NA	NA	45650715	45658308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744
ENSMUSG00000039682.13_45650716_45669501_1	chr5	+	1722	13	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	0	-532	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	743.999043271488	11160	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTGTTCTTTTTTTT	NA	False	NA	17	True	ACTAAA	-2	NA	45650715	45669501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_45650904_45652520_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
ENSMUSG00000039682.13_45650716_45669501_2	chr5	+	1728	13	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	0	-532	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	744.845635573797	10586	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTGTTCTTTTTTTT	NA	False	NA	17	True	ACTAAA	-2	NA	45650715	45669501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660728_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
ENSMUSG00000039682.13_45650846_45658308_1	chr5	+	1059	6	FSM	ENSMUSG00000039682.13	ENSMUST00000137699.3	838	6	0	-221	0	221	multi-exon	FALSE	canonical	3	2266	junction_5	195.982039993465	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGTAGTGTTTTATCTC	NA	False	NA	NA	False	NA	NA	NA	45650845	45658308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744
ENSMUSG00000039682.13_45650846_45669501_1	chr5	+	1592	13	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	0	-532	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	743.999043271488	3721	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTGTTCTTTTTTTT	NA	False	NA	17	True	ACTAAA	-2	NA	45650845	45669501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_45650904_45652520_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
ENSMUSG00000039682.13_45650846_45669501_2	chr5	+	1600	13	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	0	-532	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	743.458117328893	4873	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTGTTCTTTTTTTT	NA	False	NA	17	True	ACTAAA	-2	NA	45650845	45669501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662069_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
ENSMUSG00000039682.13_45650846_45669501_3	chr5	+	1600	13	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	0	-532	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	741.128400181477	1564	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTGTTCTTTTTTTT	NA	False	NA	17	True	ACTAAA	-2	NA	45650845	45669501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668454_45668560_45669222
ENSMUSG00000039682.13_45650846_45669501_4	chr5	+	1598	13	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	0	-532	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	744.845635573797	2987	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTGTTCTTTTTTTT	NA	False	NA	17	True	ACTAAA	-2	NA	45650845	45669501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660728_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
ENSMUSG00000039682.13_45650846_45669625_1	chr5	+	1724	13	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	0	-408	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	741.128400181477	4185	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTTCAAGCCATATTT	NA	False	NA	14	True	ATTAAA	-17	NA	45650845	45669625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668454_45668560_45669222
ENSMUSG00000039682.13_45650846_45669625_2	chr5	+	1724	13	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	0	-408	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	743.458117328893	7448	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTTCAAGCCATATTT	NA	False	NA	14	True	ATTAAA	-17	NA	45650845	45669625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662069_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
ENSMUSG00000039682.13_45650846_45670033_1	chr5	+	2137	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	130	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	15547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAGTTCTGTGAAGGGTC	NA	False	NA	35	True	AATAAA	-34	NA	45650845	45670033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
ENSMUSG00000039682.13_45650846_45682943_1	chr5	+	1955	15	Fusion	ENSMUSG00000015804.15_ENSMUSG00000039682.13	novel	2267	13	NA	NA	0	3	multi-exon	FALSE	canonical	3	45	junction_12	689.258030532152	548	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTTGTTGTTTGTATTC	NA	False	NA	25	True	AGTAAA	-14	NA	45650845	45682943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45679777_45679845_45680763_45680877_45682494
ENSMUSG00000039693.12_48540079_48561919_1	chr4	+	1720	3	FSM	ENSMUSG00000039693.12	ENSMUST00000064807.9	1378	3	0	-342	0	0	multi-exon	FALSE	canonical	3	126	junction_1	89	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTTACACTGTGTATGTT	2	True	NA	15	True	NA	NA	NA	48540078	48561919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_48540272_48552379_48552831_48560843
ENSMUSG00000039699.15_6184416_6191170_1	chr19	+	875	5	NIC	ENSMUSG00000039699.15	novel	1584	4	NA	NA	-6597	-30227	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	6833	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGGACCCCGCTCCCGTCT	46	False	NA	NA	False	NA	NA	NA	6184415	6191170	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_6184832_6186008_6186090_6187507_6187671_6187759_6187871_6191066
ENSMUSG00000039715.9_29921558_29938873_1	chr2	-	1789	9	NNC	ENSMUSG00000039715.9	novel	1814	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	60.0102855767243	462	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAGAGCCCCAAGGAGCA	NA	False	NA	0	True	NA	NA	NA	29938873	29921557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_29921985_29922084_29922243_29922413_29922647_29922761_29922930_29923285_29923396_29923817_29923976_29924774_29924885_29928186_29928434_29938695
ENSMUSG00000039720.8_27687487_27713856_1	chr8	-	1601	10	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	68	junction_6	20.0831604418561	781	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27713856	27687486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692680_27713715
ENSMUSG00000039720.8_27687487_27713856_2	chr8	-	1408	10	NNC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_9	32.9807276308715	597	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27713856	27687486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689971_27690260_27690373_27690749_27690932_27692399_27692492_27713715
ENSMUSG00000039720.8_27687487_27713856_3	chr8	-	1413	10	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	28.2016547977833	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27713856	27687486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692492_27713715
ENSMUSG00000039737.12_136209938_136227786_1	chr5	-	905	6	FSM	ENSMUSG00000039737.12	ENSMUST00000151786.8	3893	6	31	2957	-22	0	multi-exon	FALSE	canonical	3	446	junction_2	42.6164287569946	4974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCTTGTCCACACGTGCG	NA	False	NA	-13	True	AGTAAA	-16	NA	136227786	136209937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_136210351_136218405_136218474_136220753_136220840_136223150_136223252_136226633_136226713_136227628
ENSMUSG00000039737.12_136209938_136227786_2	chr5	-	898	6	NNC	ENSMUSG00000039737.12	novel	3893	6	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	214.095679545385	4804	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCTTGTCCACACGTGCG	NA	False	NA	-13	True	AGTAAA	-16	NA	136227786	136209937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_136210344_136218405_136218474_136220753_136220840_136223150_136223252_136226633_136226713_136227628
ENSMUSG00000039745.9_49408877_49423359_1	chr7	+	998	6	FSM	ENSMUSG00000039745.9	ENSMUST00000207895.2	1338	6	-24	364	0	-364	multi-exon	FALSE	canonical	3	128	junction_1	54.5688555863141	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTGGTGTGCTTCTCCT	9894	False	NA	3	True	TATAAA	-17	NA	49408876	49423359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_49409060_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUSG00000039745.9_49408877_49423359_2	chr7	+	888	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	0	-364	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	93.7861397009174	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTGGTGTGCTTCTCCT	9894	False	NA	3	True	TATAAA	-17	NA	49408876	49423359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_49408894_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUSG00000039745.9_49408877_49423743_1	chr7	+	1272	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	0	20	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	93.7861397009174	1020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGTTGTTCTAGTT	9894	False	NA	15	True	AATAAA	-15	NA	49408876	49423743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_49408894_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUSG00000039745.9_49408877_49423743_2	chr7	+	1668	5	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	0	20	intron_retention	FALSE	canonical	3	230	junction_1	21.9928965804871	1952	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGTTGTTCTAGTT	9894	False	NA	15	True	AATAAA	-15	NA	49408876	49423743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUSG00000039745.9_49409003_49423743_1	chr7	+	1256	6	FSM	ENSMUSG00000039745.9	ENSMUST00000207895.2	1338	6	102	-20	102	20	multi-exon	FALSE	canonical	3	128	junction_1	54.5688555863141	1357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGTTGTTCTAGTT	NA	False	NA	15	True	AATAAA	-15	NA	49409002	49423743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_49409060_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUSG00000039748.12_175708360_175736299_1	chr1	+	2827	15	FSM	ENSMUSG00000039748.12	ENSMUST00000039725.12	7796	15	213	4756	0	1	multi-exon	FALSE	canonical	3	208	junction_2	66.5922714152693	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGGGAAGTTTAAATGC	9766	False	NA	6	True	AATAAA	-14	NA	175708359	175736299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_175708423_175708697_175708767_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
ENSMUSG00000039753.17_43976227_43999752_1	chr5	-	1286	9	Genic_Genomic	ENSMUSG00000039753.17	novel	2762	11	NA	NA	-20772	-50776	multi-exon	FALSE	non_canonical	0	0	junction_1	0	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCAGTTCCTCTTCCACT	NA	False	NA	NA	False	NA	NA	NA	43999752	43976226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_-_43976436_43977819_43977947_43978951_43979088_43979608_43979692_43982669_43982747_43983605_43983699_43994802_43994890_43997772_43997833_43999338
ENSMUSG00000039753.17_43976406_43999752_1	chr5	-	1107	9	Genic_Genomic	ENSMUSG00000039753.17	novel	2762	11	NA	NA	-20772	-50955	multi-exon	FALSE	non_canonical	0	0	junction_1	0	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCGGCCCAGGAAGATGCT	NA	False	NA	NA	False	NA	NA	NA	43999752	43976405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_-_43976436_43977819_43977947_43978951_43979088_43979608_43979692_43982669_43982747_43983605_43983699_43994802_43994890_43997772_43997833_43999338
ENSMUSG00000039768.17_152018191_152065679_2	chr4	+	2190	16	NNC	ENSMUSG00000039768.17	novel	3151	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	221.096921934451	1512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGGGTTTGGAAACTAGT	9113	False	NA	28	True	TATAAA	-20	NA	152018190	152065679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_152018282_152034850_152034985_152037305_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
ENSMUSG00000039768.17_152018191_152065679_3	chr4	+	2193	16	FSM	ENSMUSG00000039768.17	ENSMUST00000062904.11	3151	16	43	915	0	0	multi-exon	FALSE	canonical	3	755	junction_7	69.5258864660415	1592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGGGTTTGGAAACTAGT	9113	False	NA	28	True	TATAAA	-20	NA	152018190	152065679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
ENSMUSG00000039768.17_152018191_152066412_1	chr4	+	2926	16	FSM	ENSMUSG00000039768.17	ENSMUST00000062904.11	3151	16	43	182	0	-182	multi-exon	FALSE	canonical	3	755	junction_7	69.5258864660415	1720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCACTTCTGTCCATCTGT	9113	False	NA	18	True	NA	NA	NA	152018190	152066412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
ENSMUSG00000039770.7_73143701_73156502_1	chr17	+	1179	3	FSM	ENSMUSG00000039770.7	ENSMUST00000045174.7	3120	3	253	1688	253	673	multi-exon	FALSE	canonical	3	244	junction_1	49	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGGTCCTCTGTTACT	998	False	NA	13	True	AATAAA	-13	NA	73143700	73156502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_73143787_73153273_73153439_73155574
ENSMUSG00000039770.7_73143701_73157433_1	chr17	+	2110	3	FSM	ENSMUSG00000039770.7	ENSMUST00000045174.7	3120	3	253	757	253	1	multi-exon	FALSE	canonical	3	244	junction_1	49	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTACAGAACTGCTACTT	998	False	NA	9	True	AATAAA	-18	NA	73143700	73157433	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_73143787_73153273_73153439_73155574
ENSMUSG00000039770.7_73144531_73156502_1	chr17	+	1266	3	FSM	ENSMUSG00000039770.7	ENSMUST00000233210.2	2419	3	223	930	0	673	multi-exon	FALSE	canonical	3	101	junction_1	120.5	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGGTCCTCTGTTACT	1828	False	NA	13	True	AATAAA	-13	NA	73144530	73156502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_73144704_73153273_73153439_73155574
ENSMUSG00000039781.15_119955256_119957557_1	chr11	-	864	6	ISM	ENSMUSG00000039781.15	ENSMUST00000106227.8	3578	26	20096	0	1326	0	3prime_fragment	FALSE	canonical	3	110	junction_5	9.32952303175248	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTCACCTGCTTGTCT	NA	False	NA	-9	True	AGTAAA	-27	NA	119957557	119955255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_119955536_119955610_119955672_119956213_119956378_119956463_119956642_119956736_119956880_119957519
ENSMUSG00000039795.15_10405015_10416376_1	chr3	-	1680	8	FSM	ENSMUSG00000039795.15	ENSMUST00000184644.8	954	8	1	-727	0	0	multi-exon	FALSE	canonical	3	11	junction_7	262.492293375696	1913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATTGCATTTGATCTAT	NA	False	NA	-3	True	AATAAA	-43	NA	10416376	10405014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10413613_10416228
ENSMUSG00000039795.15_10405015_10416376_2	chr3	-	1810	8	NIC	ENSMUSG00000039795.15	novel	936	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	9	junction_2	296.912685578004	1972	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATTGCATTTGATCTAT	NA	False	NA	-3	True	AATAAA	-43	NA	10416376	10405014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_10405966_10406053_10406206_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412472_10413569_10413613_10416301
ENSMUSG00000039814.16_18953652_19000989_1	chr8	-	1188	7	NNC	ENSMUSG00000039814.16	novel	3911	7	NA	NA	0	29093	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	11.5181016954473	35	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGGTCCAACAAATTTGC	NA	False	NA	NA	False	ATTAAA	-27	NA	19000989	18953651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_18953881_18987242_18987355_18989083_18989254_18990628_18990839_18991960_18992146_18998574_18998759_19000891
ENSMUSG00000039826.14_29666122_29677664_1	chr2	-	2360	9	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	-4	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	57.2362155894325	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGCATGTGATGTTTTA	NA	False	NA	-6	True	TATAAA	-23	NA	29677664	29666121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_29666427_29666624_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
ENSMUSG00000039826.14_29668436_29677664_1	chr2	-	957	6	FSM	ENSMUSG00000039826.14	ENSMUST00000177133.8	806	6	19	-170	-4	170	multi-exon	FALSE	canonical	3	76	junction_3	43.1879612855249	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAAAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	29677664	29668435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_29668881_29669834_29669908_29672131_29672214_29674964_29675040_29676487_29676620_29677514
ENSMUSG00000039826.14_29676095_29677664_1	chr2	-	675	2	ISM	ENSMUSG00000039826.14	ENSMUST00000175644.2	371	3	-19	1163	-4	-1163	5prime_fragment	FALSE	canonical	3	189	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGGAGTACAAAACAGCTA	NA	False	NA	NA	False	NA	NA	NA	29677664	29676094	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_29676620_29677514
ENSMUSG00000039849.7_164721277_164725119_1	chr2	+	730	2	NNC	ENSMUSG00000039849.7	novel	611	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	0	1593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGCACGCAAAGAAAATCT	5949	False	NA	44	True	NA	NA	NA	164721276	164725119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164721582_164724694
ENSMUSG00000039849.7_164721277_164733295_1	chr2	+	2701	17	FSM	ENSMUSG00000039849.7	ENSMUST00000041643.5	5780	17	0	3079	0	-3079	multi-exon	FALSE	canonical	3	171	junction_4	60.7051017213545	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTGTGAGGGTCTTGGG	5949	False	NA	15	True	AATACA	-13	NA	164721276	164733295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_164721410_164724694_164724865_164725996_164726140_164726224_164726350_164727278_164727417_164727595_164727724_164727827_164727983_164728414_164728563_164728643_164728728_164728978_164729079_164730270_164730434_164731013_164731187_164731305_164731393_164731473_164731659_164732334_164732429_164732518_164732695_164732796
ENSMUSG00000039865.9_121253177_121325928_1	chr3	-	2495	15	FSM	ENSMUSG00000039865.9	ENSMUST00000039197.9	2620	15	125	0	125	0	multi-exon	FALSE	canonical	2	7	junction_10	3.70672307009404	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTTTGTTCATCTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	121325928	121253176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_121253726_121254750_121254988_121257062_121257201_121279910_121279998_121283846_121284004_121291367_121291534_121303022_121303210_121303840_121303966_121305970_121306061_121307305_121307467_121318475_121318570_121319315_121319453_121320712_121320856_121325315_121325421_121325809
ENSMUSG00000039873.5_164672652_164674757_1	chr2	-	395	2	FSM	ENSMUSG00000039873.5	ENSMUST00000042775.5	1014	2	619	0	619	0	multi-exon	FALSE	canonical	3	37	junction_1	0	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGGAGGGTCTCCTTGC	NA	False	NA	NA	False	AATAAA	-24	NA	164674757	164672651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_164672908_164674618
ENSMUSG00000039886.9_135764339_135773075_1	chr5	-	1332	12	FSM	ENSMUSG00000039886.9	ENSMUST00000043378.9	1559	12	227	0	-13	0	multi-exon	FALSE	canonical	3	674	junction_10	35.0345756018723	1114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATGGACTGTGGATGTG	5290	False	NA	-4	True	AATAAA	-21	NA	135773075	135764338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_135764660_135764750_135764820_135764923_135764989_135765107_135765201_135765294_135765357_135765450_135765517_135765599_135765690_135765771_135765868_135766043_135766104_135770819_135770937_135771134_135771254_135772901
ENSMUSG00000039886.9_135764339_135773075_2	chr5	-	1312	12	NNC	ENSMUSG00000039886.9	novel	1559	12	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_4	204.293056398307	1109	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATGGACTGTGGATGTG	5290	False	NA	-4	True	AATAAA	-21	NA	135773075	135764338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_135764660_135764750_135764820_135764923_135764989_135765107_135765181_135765294_135765357_135765450_135765517_135765599_135765690_135765771_135765868_135766043_135766104_135770819_135770937_135771134_135771254_135772901
ENSMUSG00000039886.9_135764339_135773075_3	chr5	-	1331	12	NNC	ENSMUSG00000039886.9	novel	1559	12	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	207.955454543467	1109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATGGACTGTGGATGTG	5290	False	NA	-4	True	AATAAA	-21	NA	135773075	135764338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_135764660_135764750_135764820_135764923_135764989_135765107_135765201_135765294_135765352_135765446_135765517_135765599_135765690_135765771_135765868_135766043_135766104_135770819_135770937_135771134_135771254_135772901
ENSMUSG00000039887.12_121085422_121092549_1	chr3	+	508	2	ISM	ENSMUSG00000039887.12	ENSMUST00000198341.2	831	3	-117	21761	0	-21297	5prime_fragment	FALSE	canonical	3	72	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAGAATTTCTTTAAGAT	NA	False	NA	NA	False	AATAAA	-42	NA	121085421	121092549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_121085633_121092252
ENSMUSG00000039887.12_121085422_121155669_2	chr3	+	808	3	FSM	ENSMUSG00000039887.12	ENSMUST00000199554.2	441	3	-54	-313	0	313	multi-exon	FALSE	canonical	3	4	junction_1	51	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACAGGTTCTCTTGGGAC	NA	False	NA	25	True	AATAAA	-26	NA	121085421	121155669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_121085633_121113728_121113861_121155204
ENSMUSG00000039887.12_121085422_121155669_3	chr3	+	963	4	FSM	ENSMUSG00000039887.12	ENSMUST00000039442.12	2037	4	0	1074	0	313	multi-exon	FALSE	canonical	3	72	junction_1	14.5143607047182	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACAGGTTCTCTTGGGAC	NA	False	NA	25	True	AATAAA	-26	NA	121085421	121155669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_121085633_121092252_121092408_121113728_121113861_121155204
ENSMUSG00000039887.12_121085422_121155669_4	chr3	+	830	4	NNC	ENSMUSG00000039887.12	novel	2037	4	NA	NA	0	313	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	45.1072795307661	119	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACAGGTTCTCTTGGGAC	NA	False	NA	25	True	AATAAA	-26	NA	121085421	121155669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_121085500_121092252_121092408_121113728_121113861_121155204
ENSMUSG00000039901.11_45806583_45986989_1	chr19	-	2958	26	FSM	ENSMUSG00000039901.11	ENSMUST00000045396.9	3676	26	-62	780	-62	-780	multi-exon	FALSE	canonical	3	159	junction_20	17.3221707646588	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTCAAGGTGCCTACTTT	6585	False	NA	-6	True	AATAAA	-20	NA	45986989	45806582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_45807418_45808712_45808830_45834546_45834626_45874390_45874467_45879646_45879774_45880504_45880588_45910055_45910145_45920789_45920851_45922224_45922295_45924800_45924867_45928883_45928943_45934440_45934543_45939100_45939195_45941063_45941140_45941862_45941910_45945118_45945180_45946845_45946890_45948751_45948809_45953602_45953690_45953800_45953876_45954680_45954774_45961261_45961370_45963405_45963553_45963657_45963715_45967038_45967152_45986854
ENSMUSG00000039903.19_90694061_90701583_1	chr16	+	873	2	ISM	ENSMUSG00000039903.19	ENSMUST00000099543.10	1554	7	66060	0	50775	0	3prime_fragment	FALSE	canonical	3	18	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTATCTGTACATTAATAA	NA	False	NA	NA	False	AATAAA	-28	NA	90694060	90701583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_90694342_90700991
ENSMUSG00000039914.7_128198969_128201084_1	chr10	-	987	3	ISM	ENSMUSG00000039914.7	ENSMUST00000220027.2	1307	5	3476	0	189	0	3prime_fragment	FALSE	canonical	3	94	junction_2	5.5	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTCATTTTTTGAG	NA	False	NA	-3	True	AATAAA	-12	NA	128201084	128198968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_128199661_128200273_128200376_128200891
ENSMUSG00000039917.11_135661558_135673002_1	chr5	+	2013	5	FSM	ENSMUSG00000039917.11	ENSMUST00000136748.6	4363	5	50	2300	0	-379	multi-exon	FALSE	canonical	3	43	junction_1	101.030626544628	441	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGTGTGGCATACTGTG	NA	False	NA	17	True	TATAAA	-21	NA	135661557	135673002	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_135661773_135663957_135664078_135664848_135665257_135667943_135668095_135671883
ENSMUSG00000039942.16_5215041_5247817_1	chr15	-	1636	5	Fusion	ENSMUSG00000039942.16_ENSMUSG00000087532.2	novel	3771	3	NA	NA	24374	-10475	multi-exon	FALSE	non_canonical	0	0	junction_1	0	260	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCAGGACCACTAATCCC	NA	False	NA	NA	False	AAGAAA	-29	NA	5247817	5215040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr15_-_5215054_5219062_5219285_5237849_5237932_5241479_5241612_5246630
ENSMUSG00000039963.21_119133011_119133703_1	chr11	+	473	2	NNC	ENSMUSG00000039963.21	novel	4979	19	NA	NA	3467	-8932	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACACCTCCCCCTTTTCCC	6269	False	NA	NA	False	NA	NA	NA	119133010	119133703	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_119133299_119133518
ENSMUSG00000039983.14_118848642_118859858_1	chr2	-	1472	4	FSM	ENSMUSG00000039983.14	ENSMUST00000036470.14	1870	4	16	382	0	-382	multi-exon	FALSE	canonical	3	33	junction_3	9.0921211313239	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTGTGTAGTGTGTGTG	NA	False	NA	-2	True	TATAAA	-15	NA	118859858	118848641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_118849646_118852549_118852707_118857618_118857869_118859797
ENSMUSG00000039985.15_148822555_148847941_1	chr6	-	1375	7	NNC	ENSMUSG00000039985.15	novel	2785	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	833.564967807282	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	AATAAA	-25	NA	148847941	148822554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_148822728_148824003_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
ENSMUSG00000039994.16_128085913_128088810_1	chr10	+	1490	7	ISM	ENSMUSG00000039994.16	ENSMUST00000105240.8	2320	13	2704	-2	425	0	3prime_fragment	FALSE	canonical	3	88	junction_1	118.427779211167	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTTTGTTGTCTTCCTCC	393	False	NA	20	True	AATAAA	-20	NA	128085912	128088810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_128085980_128086156_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
ENSMUSG00000040006.14_7667184_7668564_1	chr10	-	468	2	NNC	ENSMUSG00000040006.14	novel	353	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	0	87	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAATTTCAACTCC	NA	False	NA	NA	False	NA	NA	NA	7668564	7667183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_7667359_7668271
ENSMUSG00000040013.12_135366220_135378897_1	chr5	-	1167	7	ISM	ENSMUSG00000040013.12	ENSMUST00000201791.4	1297	8	-29	45662	0	0	5prime_fragment	FALSE	canonical	3	68	junction_3	365.317061681433	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAGTCATTAGTGTGACA	NA	False	NA	-3	True	ATTAAA	-24	NA	135378897	135366219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_135366562_135368331_135368442_135368775_135368971_135374943_135375147_135376730_135376821_135378471_135378590_135378788
ENSMUSG00000040018.10_43723559_43741439_1	chr19	-	2932	9	FSM	ENSMUSG00000040018.10	ENSMUST00000045562.6	4798	9	0	1866	0	-1866	multi-exon	FALSE	canonical	3	354	junction_3	36.2782217728488	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAGTCAGCTAACCCAG	NA	False	NA	-14	True	AATAAA	-18	NA	43741439	43723558	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739974_43741260
ENSMUSG00000040018.10_43724461_43741439_1	chr19	-	2030	9	FSM	ENSMUSG00000040018.10	ENSMUST00000045562.6	4798	9	0	2768	0	2015	multi-exon	FALSE	canonical	3	354	junction_3	36.2782217728488	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATGGAGGCTTAACATGT	NA	False	NA	NA	False	ATTAAA	-33	NA	43741439	43724460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739974_43741260
ENSMUSG00000040018.10_43724698_43741439_1	chr19	-	1793	9	FSM	ENSMUSG00000040018.10	ENSMUST00000045562.6	4798	9	0	3005	0	1778	multi-exon	FALSE	canonical	3	354	junction_3	36.2782217728488	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTGTTTGTGTTAATA	NA	False	NA	NA	False	NA	NA	NA	43741439	43724697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739974_43741260
ENSMUSG00000040018.10_43735340_43741439_1	chr19	-	515	4	ISM	ENSMUSG00000040018.10	ENSMUST00000045562.6	4798	9	0	13647	0	-8864	5prime_fragment	FALSE	canonical	3	355	junction_1	17.0163320241336	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGAATTCAAGTTTATCTG	NA	False	NA	NA	False	NA	NA	NA	43741439	43735339	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_43735362_43737228_43737352_43739782_43739974_43741260
ENSMUSG00000040018.10_43741435_43757072_1	chr19	-	1330	9	NIC	ENSMUSG00000040018.10	novel	4798	9	NA	NA	-15633	-14959	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCGGAAGTGCTTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	43757072	43741434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_43741660_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751311_43751446_43753398_43753427_43755639_43755746_43756613
ENSMUSG00000040025.18_131913375_131939420_1	chr4	-	2777	4	NNC	ENSMUSG00000040025.18	novel	2536	4	NA	NA	-4	226	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	439.377590082456	695	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAGTACCACTTAGTATT	NA	False	NA	-14	True	AATAAA	-23	NA	131939420	131913374	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_131914259_131931442_131933027_131938062_131938143_131939191
ENSMUSG00000040026.9_46361422_46363181_1	chr7	-	457	3	NNC	ENSMUSG00000040026.9	novel	555	4	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	9.5	101	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCGCTGTCACTGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	46363181	46361421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_46361689_46362012_46362152_46363130
ENSMUSG00000040034.16_7543304_7544619_1	chr10	+	996	2	FSM	ENSMUSG00000040034.16	ENSMUST00000162346.2	458	2	26	-564	0	564	multi-exon	FALSE	canonical	3	1246	junction_1	0	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTGCTGGGCGGGGTGGCG	NA	False	NA	NA	False	NA	NA	NA	7543303	7544619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_7543446_7543765
ENSMUSG00000040040.17_57744677_57755393_1	chr14	+	763	3	ISM	ENSMUSG00000040040.17	ENSMUST00000154492.2	4226	23	83114	0	27574	0	3prime_fragment	FALSE	canonical	3	42	junction_2	3.5	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTGAGGCTAATGACTTC	NA	False	NA	13	True	AATAAA	-15	NA	57744676	57755393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_57744729_57754437_57754549_57754793
ENSMUSG00000040040.17_57754437_57755393_1	chr14	+	716	2	NNC	ENSMUSG00000040040.17	novel	4226	23	NA	NA	37334	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTGAGGCTAATGACTTC	8265	False	NA	13	True	AATAAA	-15	NA	57754436	57755393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_57754553_57754793
ENSMUSG00000040043.18_127969193_128012498_1	chr10	-	1414	13	FSM	ENSMUSG00000040043.18	ENSMUST00000092033.4	1481	13	-150	217	-150	0	multi-exon	FALSE	canonical	3	274	junction_9	21.4048281157936	1037	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTGGCTGATGGAAC	NA	False	NA	-57	True	NA	NA	NA	128012498	127969192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128012218
ENSMUSG00000040054.18_127932731_127946813_1	chr10	+	527	3	NNC	ENSMUSG00000040054.18	novel	3721	11	NA	NA	482	-1205	at_least_one_novel_splicesite	FALSE	canonical	3	297	junction_1	37.5	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCTTTCTCAGTTCCCTG	NA	False	NA	NA	False	NA	NA	NA	127932730	127946813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_127932930_127944762_127944901_127946623
ENSMUSG00000040054.18_127932749_127946728_1	chr10	+	424	3	NNC	ENSMUSG00000040054.18	novel	3721	11	NA	NA	500	-1290	at_least_one_novel_splicesite	FALSE	canonical	3	297	junction_1	37.5	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACCCTAACGTGGCCTAC	NA	False	NA	NA	False	NA	NA	NA	127932748	127946728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_127932930_127944762_127944901_127946623
ENSMUSG00000040112.10_146944262_146972399_1	chr6	+	1072	8	FSM	ENSMUSG00000040112.10	ENSMUST00000036111.10	4162	8	0	3090	0	2	multi-exon	FALSE	canonical	3	595	junction_4	51.0230040155958	2838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTATTGTCTTACGTCAGG	NA	False	NA	14	True	TATAAA	-16	NA	146944261	146972399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_146944399_146947608_146947647_146949631_146949800_146951325_146951387_146957349_146957490_146961639_146961750_146962920_146962991_146972051
ENSMUSG00000040112.10_146944262_146972399_2	chr6	+	1048	7	NNC	ENSMUSG00000040112.10	novel	4162	8	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	253.535938719193	2662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTATTGTCTTACGTCAGG	NA	False	NA	14	True	TATAAA	-16	NA	146944261	146972399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_146944413_146949631_146949800_146951325_146951387_146957349_146957490_146961639_146961750_146962920_146962991_146972051
ENSMUSG00000040112.10_146944262_146972399_3	chr6	+	1065	8	NNC	ENSMUSG00000040112.10	novel	4162	8	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	249.844196348403	2791	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTATTGTCTTACGTCAGG	NA	False	NA	14	True	TATAAA	-16	NA	146944261	146972399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_146944399_146947608_146947647_146949631_146949800_146951325_146951387_146957349_146957483_146961639_146961750_146962920_146962991_146972051
ENSMUSG00000040123.18_57030380_57049104_1	chr14	-	2827	7	NIC	ENSMUSG00000040123.18	novel	5290	8	NA	NA	-14	405	combination_of_known_junctions	FALSE	canonical	3	42	junction_6	15.7630016882008	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATTTTTGTTTTCTTGTG	8890	False	NA	1	True	NA	NA	NA	57049104	57030379	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
ENSMUSG00000040139.15_136977303_137012485_1	chr7	-	1283	5	FSM	ENSMUSG00000040139.15	ENSMUST00000117404.8	699	5	-21	-563	0	0	multi-exon	FALSE	canonical	3	25	junction_1	88.1373218336024	1567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGTCTGGCTTGGTGT	NA	False	NA	-7	True	ATTAAA	-14	NA	137012485	136977302	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_136978081_136978683_136978847_136989099_136989163_136989268_136989431_137012368
ENSMUSG00000040139.15_136977419_137012485_1	chr7	-	1004	4	FSM	ENSMUSG00000040139.15	ENSMUST00000068996.13	1126	4	6	116	0	-116	multi-exon	FALSE	canonical	3	160	junction_1	38.0292285252044	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTATGATCTTGATGTG	NA	False	NA	NA	False	ATTAAA	-23	NA	137012485	136977418	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_136978081_136989099_136989163_136989268_136989431_137012368
ENSMUSG00000040139.15_136977866_137012485_1	chr7	-	557	4	FSM	ENSMUSG00000040139.15	ENSMUST00000068996.13	1126	4	6	563	0	0	multi-exon	FALSE	canonical	3	160	junction_1	38.0292285252044	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAATAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	137012485	136977865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_136978081_136989099_136989163_136989268_136989431_137012368
ENSMUSG00000040174.15_93810982_93841099_1	chr2	-	1129	9	NNC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	51.8216593231054	194	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8851	False	NA	-7	True	ATTAAA	-20	NA	93841099	93810981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833468_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
ENSMUSG00000040174.15_93810982_93841099_2	chr2	-	1583	9	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	37	junction_3	44.7988560121796	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8851	False	NA	-7	True	ATTAAA	-20	NA	93841099	93810981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607
ENSMUSG00000040174.15_93810982_93841099_3	chr2	-	1309	10	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	49.5186708770752	551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8851	False	NA	-7	True	ATTAAA	-20	NA	93841099	93810981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607_93840754_93841027
ENSMUSG00000040174.15_93810982_93841099_4	chr2	-	1163	9	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	40.6799628195504	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8851	False	NA	-7	True	ATTAAA	-20	NA	93841099	93810981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
ENSMUSG00000040195.12_127512935_127532817_1	chr10	+	1901	9	FSM	ENSMUSG00000040195.12	ENSMUST00000048099.5	6002	9	0	4101	0	8	multi-exon	FALSE	canonical	3	115	junction_7	22.4499443206436	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATGTTCTTTACCCAATA	NA	False	NA	NA	False	AATATA	-20	NA	127512934	127532817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127513097_127524101_127524218_127525093_127525314_127526729_127526803_127528836_127528931_127529352_127529468_127530297_127530524_127531237_127531412_127532096
ENSMUSG00000040204.7_65797644_65809015_1	chr9	+	530	4	FSM	ENSMUSG00000040204.7	ENSMUST00000045802.7	2188	4	125	1533	0	-1533	multi-exon	FALSE	canonical	3	794	junction_3	40.4722126896961	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGATGTAAGAATGGAGAA	NA	False	NA	NA	False	AAGAAA	-1	NA	65797643	65809015	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_65797757_65798013_65798092_65800653_65800817_65808839
ENSMUSG00000040204.7_65797644_65809125_1	chr9	+	640	4	FSM	ENSMUSG00000040204.7	ENSMUST00000045802.7	2188	4	125	1423	0	-1423	multi-exon	FALSE	canonical	3	794	junction_3	40.4722126896961	970	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTCCCTGGCACTCTACTT	NA	False	NA	9	True	NA	NA	NA	65797643	65809125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_65797757_65798013_65798092_65800653_65800817_65808839
ENSMUSG00000040204.7_65797644_65809404_1	chr9	+	919	4	FSM	ENSMUSG00000040204.7	ENSMUST00000045802.7	2188	4	125	1144	0	-1144	multi-exon	FALSE	canonical	3	794	junction_3	40.4722126896961	5841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAATCTCTTGTCATTTA	NA	False	NA	NA	False	ATTAAA	-19	NA	65797643	65809404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_65797757_65798013_65798092_65800653_65800817_65808839
ENSMUSG00000040209.13_9503352_9504902_1	chr3	-	665	2	FSM	ENSMUSG00000040209.13	ENSMUST00000192832.2	1455	2	1194	-404	1194	0	multi-exon	FALSE	canonical	3	358	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTTTCTATGTCTGTTT	NA	False	NA	-15	True	NA	NA	NA	9504902	9503351	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_9503959_9504844
ENSMUSG00000040212.13_45567447_45570726_1	chr7	-	634	5	FSM	ENSMUSG00000040212.13	ENSMUST00000038876.13	736	5	102	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	7.77817459305202	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCGGCTCCTCTTCCTTC	4460	False	NA	NA	False	AATAAA	-20	NA	45570726	45567446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45567660_45568741_45568883_45569358_45569462_45569712_45569829_45570665
ENSMUSG00000040213.14_142406812_142426350_1	chr3	+	516	4	ISM	ENSMUSG00000040213.14	ENSMUST00000129775.8	1798	15	-43	23749	0	-5610	5prime_fragment	FALSE	canonical	3	81	junction_2	14.7271480229163	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTAGGATCAACTGTCT	NA	False	NA	NA	False	NA	NA	NA	142406811	142426350	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_142406937_142412449_142412553_142424136_142424196_142426121
ENSMUSG00000040213.14_142418579_142450099_1	chr3	+	1695	13	NNC	ENSMUSG00000040213.14	novel	734	7	NA	NA	-10297	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	24.2674622122344	129	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCCGTGTTGTACTTTC	NA	False	NA	23	True	AATACA	-37	NA	142418578	142450099	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_142418803_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
ENSMUSG00000040213.14_142418579_142450288_1	chr3	+	1884	13	NNC	ENSMUSG00000040213.14	novel	734	7	NA	NA	-10297	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	24.2674622122344	159	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATACCTCATCTGCAGCT	NA	False	NA	NA	False	NA	NA	NA	142418578	142450288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_142418803_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
ENSMUSG00000040219.5_49349564_49397515_1	chr9	-	2317	22	FSM	ENSMUSG00000040219.5	ENSMUST00000055096.5	3628	22	10	1301	0	-1301	multi-exon	FALSE	canonical	3	14	junction_3	5.49706167646225	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGATGTCTGCCGGGTTTT	NA	False	NA	0	True	AATAAA	-27	NA	49397515	49349563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_49349757_49351456_49351683_49353136_49353237_49354401_49354504_49355967_49356037_49356484_49356584_49357041_49357180_49357824_49357886_49359226_49359320_49364623_49364793_49367160_49367250_49368132_49368203_49369295_49369485_49369949_49370011_49371689_49371762_49378071_49378132_49381528_49381651_49382425_49382504_49383161_49383184_49383682_49383844_49395969_49396043_49397445
ENSMUSG00000040225.16_162548114_162568076_1	chr1	-	684	5	NIC	ENSMUSG00000040225.16	novel	670	6	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	13.8270568090248	393	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAGAAAAGGAAGC	3463	False	NA	NA	False	NA	NA	NA	162568076	162548113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_162548176_162549013_162549109_162550678_162550857_162552272_162552439_162567893
ENSMUSG00000040225.16_162548114_162568076_2	chr1	-	678	5	ISM	ENSMUSG00000040225.16	ENSMUST00000183011.8	1827	12	-103	10178	-10	0	5prime_fragment	FALSE	canonical	3	7	junction_1	14.456832294801	171	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAGAAAAGGAAGC	3463	False	NA	NA	False	NA	NA	NA	162568076	162548113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_162548176_162549013_162549109_162550678_162550851_162552272_162552439_162567893
ENSMUSG00000040225.16_162548114_162568076_3	chr1	-	693	5	ISM	ENSMUSG00000040225.16	ENSMUST00000028016.16	8815	35	43	47143	-10	0	5prime_fragment	FALSE	canonical	3	17	junction_3	9.8488578017961	296	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAGAAAAGGAAGC	3463	False	NA	NA	False	NA	NA	NA	162568076	162548113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_162548176_162548998_162549109_162550678_162550851_162552272_162552439_162567893
ENSMUSG00000040236.5_3726510_3729429_1	chr8	+	509	2	FSM	ENSMUSG00000040236.5	ENSMUST00000044857.4	2546	2	211	1826	0	-1491	multi-exon	FALSE	canonical	3	198	junction_1	0	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAACTGTGCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	3726509	3729429	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_3726604_3729014
ENSMUSG00000040236.5_3726510_3729624_1	chr8	+	704	2	FSM	ENSMUSG00000040236.5	ENSMUST00000044857.4	2546	2	211	1631	0	-1296	multi-exon	FALSE	canonical	3	198	junction_1	0	2800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGCTTGTGTTGTGTCT	NA	False	NA	19	True	GATAAA	-19	NA	3726509	3729624	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_3726604_3729014
ENSMUSG00000040236.5_3726510_3730921_1	chr8	+	2001	2	FSM	ENSMUSG00000040236.5	ENSMUST00000044857.4	2546	2	211	334	0	1	multi-exon	FALSE	canonical	3	198	junction_1	0	2987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGGCTATTATTATTGT	NA	False	NA	15	True	NA	NA	NA	3726509	3730921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_3726604_3729014
ENSMUSG00000040242.15_146479419_146499253_1	chr6	+	1375	7	FSM	ENSMUSG00000040242.15	ENSMUST00000111663.9	2880	7	62	1443	0	424	multi-exon	FALSE	canonical	0	0	junction_3	146.964470385041	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAAGGTTGGTGTGGTTTTC	NA	False	NA	22	True	AATAAA	-34	NA	146479418	146499253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131_146494246_146496673_146496788_146498792
ENSMUSG00000040242.15_146479419_146499253_2	chr6	+	1261	6	FSM	ENSMUSG00000040242.15	ENSMUST00000067404.13	2766	6	62	1443	0	424	multi-exon	FALSE	canonical	0	0	junction_3	164.658434342125	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAAGGTTGGTGTGGTTTTC	NA	False	NA	22	True	AATAAA	-34	NA	146479418	146499253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146496673_146496788_146498792
ENSMUSG00000040250.15_146451139_146452163_1	chr6	-	450	3	ISM	ENSMUSG00000040250.15	ENSMUST00000032427.15	3059	18	27170	9	-264	0	3prime_fragment	FALSE	canonical	3	82	junction_2	3	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCCAAGTATCGGAGTG	7979	False	NA	-11	True	AATAAA	-17	NA	146452163	146451138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_146451484_146451584_146451663_146452136
ENSMUSG00000040250.15_146451139_146478940_1	chr6	-	2657	18	FSM	ENSMUSG00000040250.15	ENSMUST00000032427.15	3059	18	393	9	338	0	multi-exon	FALSE	canonical	3	82	junction_2	56.6296167637544	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCCAAGTATCGGAGTG	NA	False	NA	-11	True	AATAAA	-17	NA	146478940	146451138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_146451484_146451584_146451663_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
ENSMUSG00000040250.15_146451139_146478940_2	chr6	-	2579	17	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	338	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	24.9699819783675	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCCAAGTATCGGAGTG	NA	False	NA	-11	True	AATAAA	-17	NA	146478940	146451138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
ENSMUSG00000040269.6_8867206_8988874_1	chr3	-	673	3	NNC	ENSMUSG00000040269.6	novel	783	3	NA	NA	104	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	445.5	13331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGCCGTGGTTCTTTT	NA	False	NA	-1	True	NA	NA	NA	8988874	8867205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_8867465_8965041_8965228_8988646
ENSMUSG00000040269.6_8867206_8988874_2	chr3	-	497	2	NIC	ENSMUSG00000040269.6	novel	783	3	NA	NA	104	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_1	0	1269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGCCGTGGTTCTTTT	NA	False	NA	-1	True	NA	NA	NA	8988874	8867205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_8867475_8988646
ENSMUSG00000040269.6_8867206_8988874_3	chr3	-	674	3	NNC	ENSMUSG00000040269.6	novel	783	3	NA	NA	104	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	445.5	13139	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGCCGTGGTTCTTTT	NA	False	NA	-1	True	NA	NA	NA	8988874	8867205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_8867475_8965050_8965228_8988646
ENSMUSG00000040274.12_3391485_3571069_1	chr5	+	1597	8	NIC	ENSMUSG00000040274.12	novel	2470	7	NA	NA	0	-1156	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	16.8861735494711	748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGCTGCCATTTCGTTTT	NA	False	NA	19	True	NA	NA	NA	3391484	3571069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_3391575_3394118_3394600_3440680_3440817_3478990_3479159_3523118_3523229_3565453_3565505_3569358_3569495_3570644
ENSMUSG00000040276.16_27921672_27927666_1	chr17	+	1431	8	ISM	ENSMUSG00000040276.16	ENSMUST00000097360.3	1800	10	17501	-33	-1759	0	3prime_fragment	TRUE	canonical	3	26	junction_1	11.2866184086307	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGCGTTTGCAGCCTACC	NA	False	NA	NA	False	TTTAAA	-45	NA	27921671	27927666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_27921831_27923818_27924055_27924598_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
ENSMUSG00000040282.14_115412214_115473785_1	chr2	+	689	6	NNC	ENSMUSG00000040282.14	novel	2735	11	NA	NA	0	2661	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	132.367065390149	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGGGATGTGCTCGTA	NA	False	NA	NA	False	ATTAAA	-17	NA	115412213	115473785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115473594
ENSMUSG00000040302.18_3633978_3646106_1	chr5	-	1889	5	FSM	ENSMUSG00000040302.18	ENSMUST00000042753.14	2368	5	479	0	-24	0	multi-exon	FALSE	canonical	3	107	junction_2	28.3813318926368	1090	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGCTATCTGCGTGTC	1953	False	NA	-9	True	AATAAA	-21	NA	3646106	3633977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_3634808_3640222_3640804_3641669_3641816_3645254_3645446_3645965
ENSMUSG00000040323.14_161553084_161555260_1	chr1	-	1727	3	FSM	ENSMUSG00000040323.14	ENSMUST00000151268.2	798	3	-202	-727	-202	727	multi-exon	FALSE	non_canonical	3	106	junction_1	98.5	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACAAGAGAACACAGGTAAA	NA	False	NA	NA	False	NA	NA	NA	161555260	161553083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_161553876_161554208_161554584_161554700
ENSMUSG00000040323.14_161553084_161555260_2	chr1	-	2060	2	NIC	ENSMUSG00000040323.14	novel	798	3	NA	NA	-202	727	intron_retention	FALSE	non_canonical	3	303	junction_1	0	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACAAGAGAACACAGGTAAA	NA	False	NA	NA	False	NA	NA	NA	161555260	161553083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_161554584_161554700
ENSMUSG00000040325.17_106742858_106758191_1	chr9	+	1353	3	ISM	ENSMUSG00000040325.17	ENSMUST00000161758.3	5539	23	36590	0	-8597	0	3prime_fragment	FALSE	canonical	3	304	junction_2	68.5	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTTTTCTTTTACC	NA	False	NA	16	True	AATAAA	-27	NA	106742857	106758191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_106742899_106751254_106751508_106757132
ENSMUSG00000040331.17_130134256_130140785_1	chr7	-	629	7	ISM	ENSMUSG00000040331.17	ENSMUST00000160289.9	1435	11	8326	0	153	0	3prime_fragment	FALSE	canonical	3	1333	junction_1	71.7998761992124	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACGTGATCGTTTTTATTG	NA	False	NA	-7	True	ATTAAA	-22	NA	130140785	130134255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_130134423_130135306_130135397_130135499_130135592_130137253_130137303_130138712_130138808_130139891_130139983_130140740
ENSMUSG00000040345.11_127161581_127165812_1	chr10	+	1650	12	ISM	ENSMUSG00000040345.11	ENSMUST00000069548.7	1782	15	1956	0	1389	0	3prime_fragment	FALSE	canonical	3	51	junction_1	7.05117070169648	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	NA	False	NA	10	True	ATTAAA	-16	NA	127161580	127165812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
ENSMUSG00000040354.15_127126662_127132157_1	chr10	-	871	4	NIC	ENSMUSG00000040354.15	novel	621	6	NA	NA	1387	5428	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	11927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGAGCGGAGAGCGAGTA	4492	False	NA	NA	False	NA	NA	NA	127132157	127126661	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_127126761_127129580_127129629_127131189_127131348_127131591
ENSMUSG00000040354.15_127132095_127132504_1	chr10	-	310	2	ISM	ENSMUSG00000040354.15	ENSMUST00000134778.3	621	6	1129	0	1040	0	3prime_fragment	FALSE	canonical	3	2169	junction_1	0	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGAGCCCTCTCCTGGTCT	4145	False	NA	-11	True	AATAAA	-22	NA	127132504	127132094	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_127132310_127132409
ENSMUSG00000040354.15_127132095_127147547_1	chr10	-	2826	21	FSM	ENSMUSG00000040354.15	ENSMUST00000037290.12	2939	21	108	5	0	0	multi-exon	FALSE	canonical	3	1393	junction_15	206.401332360041	767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGAGCCCTCTCCTGGTCT	NA	False	NA	-11	True	AATAAA	-22	NA	127147547	127132094	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
ENSMUSG00000040356.17_35058220_35058740_1	chr17	-	436	2	ISM	ENSMUSG00000040356.17	ENSMUST00000174887.8	3995	27	10428	-5	1364	0	3prime_fragment	FALSE	canonical	3	144	junction_1	0	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTTGGAGTATGGTAACT	7459	False	NA	-23	True	AATAAA	-13	NA	35058740	35058219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_35058582_35058666
ENSMUSG00000040356.17_35058220_35060482_1	chr17	-	1387	8	ISM	ENSMUSG00000040356.17	ENSMUST00000174887.8	3995	27	8686	-5	-378	0	3prime_fragment	FALSE	canonical	3	113	junction_5	13.3278900453607	136	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTTGGAGTATGGTAACT	5717	False	NA	-23	True	AATAAA	-13	NA	35060482	35058219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_35058582_35058666_35058808_35058972_35059192_35059271_35059383_35059485_35059697_35059833_35059961_35060043_35060195_35060417
ENSMUSG00000040359.15_25250147_25281773_1	chr4	-	2726	19	FSM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	48	1542	-10	0	multi-exon	TRUE	canonical	3	153	junction_3	22.816024799564	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGACTTGTTTGTTATTT	3	True	NA	3	True	AATAAA	-24	NA	25281773	25250146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
ENSMUSG00000040370.14_145156926_145160893_1	chr6	+	699	2	ISM	ENSMUSG00000040370.14	ENSMUST00000111719.2	968	4	0	567	0	199	intron_retention	FALSE	canonical	3	14	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCTTTTCTTTAGGTAT	NA	False	NA	NA	False	AAAAAG	-5	NA	145156925	145160893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_145156979_145160247
ENSMUSG00000040383.17_113985242_114005788_1	chr2	-	1063	9	FSM	ENSMUSG00000040383.17	ENSMUST00000131785.8	3112	9	31	2018	-30	-2018	multi-exon	FALSE	canonical	3	222	junction_1	25.6307920283397	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTATTTCGTTAGTAAAT	7841	False	NA	NA	False	ATTAAA	-21	NA	114005788	113985241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_113985523_113986727_113986829_113988020_113988090_113989350_113989492_113992044_113992166_113996673_113996710_114000507_114000549_114003171_114003229_114005572
ENSMUSG00000040385.8_4242158_4245419_1	chr19	+	1374	7	NNC	ENSMUSG00000040385.8	novel	1473	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1493.56192446856	4384	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATAGCCTCTGTCTCTCTT	3371	False	NA	31	True	AATAAA	-20	NA	4242157	4245419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_4242271_4242743_4242876_4243020_4243252_4243770_4243871_4244465_4244690_4244770_4244906_4244980
ENSMUSG00000040407.19_3978274_4007800_1	chr5	+	1036	7	ISM	ENSMUSG00000040407.19	ENSMUST00000143365.8	2010	8	96	3189	0	90	5prime_fragment	FALSE	canonical	3	19	junction_3	6.50640709864771	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGGAAGCTAGCTCATGT	NA	False	NA	NA	False	NA	NA	NA	3978273	4007800	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_3978491_3998680_3998897_4001689_4001735_4004396_4004451_4004791_4004963_4006156_4006313_4007623
ENSMUSG00000040415.16_127026247_127031597_1	chr10	-	2259	5	FSM	ENSMUSG00000040415.16	ENSMUST00000116229.2	1994	5	-1	-264	0	0	multi-exon	FALSE	canonical	3	65	junction_4	30.8332207205151	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031597	127026246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_127027423_127028477_127029227_127029598_127029673_127030278_127030504_127031562
ENSMUSG00000040415.16_127026247_127031597_2	chr10	-	835	4	NIC	ENSMUSG00000040415.16	novel	1944	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_3	61.5196445590079	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031597	127026246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_127026909_127029598_127029673_127030278_127030343_127031562
ENSMUSG00000040428.20_45185036_45187913_1	chr7	+	643	3	Genic_Genomic	ENSMUSG00000040428.20	novel	2133	16	NA	NA	5041	-4754	multi-exon	FALSE	non_canonical	0	0	junction_1	0	120	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGACTACATTTCCCACT	3762	False	NA	NA	False	NA	NA	NA	45185035	45187913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_45185366_45187039_45187270_45187830
ENSMUSG00000040428.20_45185036_45187913_2	chr7	+	585	3	Genic_Genomic	ENSMUSG00000040428.20	novel	2133	16	NA	NA	5041	-4754	multi-exon	FALSE	non_canonical	0	0	junction_1	0	92	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGACTACATTTCCCACT	3762	False	NA	NA	False	NA	NA	NA	45185035	45187913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_45185366_45187097_45187270_45187830
ENSMUSG00000040428.20_45199313_45203653_1	chr7	+	655	3	ISM	ENSMUSG00000040428.20	ENSMUST00000211797.2	2655	18	19896	0	0	0	3prime_fragment	FALSE	canonical	3	13	junction_1	3.5	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTTGTGACATTGTGTT	NA	False	NA	8	True	AATAAA	-17	NA	45199312	45203653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_45199390_45202992_45203106_45203188
ENSMUSG00000040435.13_45172341_45174362_1	chr7	-	1606	2	FSM	ENSMUSG00000040435.13	ENSMUST00000167273.2	2809	2	1208	-5	-1169	0	multi-exon	FALSE	canonical	3	424	junction_1	0	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTACGTGTGTTCTTTAT	5191	False	NA	44	True	AATAAA	-24	NA	45174362	45172340	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45172747_45173162
ENSMUSG00000040435.13_45174792_45175692_1	chr7	-	297	2	NNC	ENSMUSG00000040435.13	novel	2333	3	NA	NA	0	-2446	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCCCAGCATGTCCTGCA	3861	False	NA	NA	False	NA	NA	NA	45175692	45174791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_45174811_45175414
ENSMUSG00000040446.5_24638484_24663153_2	chr18	-	2226	6	ISM	ENSMUSG00000040446.5	ENSMUST00000046206.5	4299	7	108	20467	-2	0	5prime_fragment	FALSE	canonical	3	215	junction_1	43.046951111548	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTCTCATGTTTTTGA	NA	False	NA	-1	True	AATAAA	-18	NA	24663153	24638483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_-_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
ENSMUSG00000040459.12_8716576_8731655_1	chr8	-	1113	2	ISM	ENSMUSG00000040459.12	ENSMUST00000207070.2	525	3	608	-773	608	0	3prime_fragment	FALSE	canonical	3	955	junction_1	0	499	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTTAAGCAATTTTTAT	NA	False	NA	-11	True	AATAAA	-35	NA	8731655	8716575	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_8717417_8731383
ENSMUSG00000040459.12_8717200_8733928_1	chr8	-	482	3	ISM	ENSMUSG00000040459.12	ENSMUST00000048545.10	3197	4	6593	2125	-1665	0	3prime_fragment	FALSE	canonical	3	754	junction_2	100.5	127	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCATGTTGAAGTGGTTT	NA	False	NA	-5	True	AAGAAA	-23	NA	8733928	8717199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_8717417_8731383_8731468_8733747
ENSMUSG00000040462.14_126931519_126934373_1	chr10	-	1355	5	ISM	ENSMUSG00000040462.14	ENSMUST00000164259.9	2627	15	22627	-2	22611	0	3prime_fragment	FALSE	canonical	3	78	junction_3	72.2028392793524	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCAGGCTCTGTGGGGA	NA	False	NA	-2	True	AATAAA	-16	NA	126934373	126931518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_126932242_126932498_126932612_126932783_126932949_126933800_126933991_126934209
ENSMUSG00000040463.17_72332203_72342376_1	chr11	+	4118	26	FSM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	22	218	0	-218	multi-exon	FALSE	canonical	3	2354	junction_12	204.057066527969	971	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	46	True	AATAAA	-16	NA	72332202	72342376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
ENSMUSG00000040463.17_72338793_72342376_1	chr11	+	1793	9	ISM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	6612	218	-250	-218	3prime_fragment	FALSE	canonical	3	2480	junction_1	171.638382580937	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	46	True	AATAAA	-16	NA	72338792	72342376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
ENSMUSG00000040464.16_5588810_5609513_2	chr5	-	1646	10	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	0	423	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	83.4476253277438	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGACTCTGTTTTAAAA	NA	False	NA	NA	False	AATATA	-13	NA	5609513	5588809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_5589452_5592246_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
ENSMUSG00000040466.17_27147486_27165412_1	chr7	+	788	5	FSM	ENSMUSG00000040466.17	ENSMUST00000037399.16	1028	5	83	157	0	3	multi-exon	FALSE	canonical	2	274	junction_1	67.0834368529222	4815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCCTCTCTCTGTCTGTG	NA	False	NA	49	True	NA	NA	NA	27147485	27165412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27147622_27158680_27158846_27158987_27159078_27161991_27162121_27165144
ENSMUSG00000040472.16_55953334_55957384_1	chr14	-	1634	11	ISM	ENSMUSG00000040472.16	ENSMUST00000169237.8	2547	16	2249	0	206	0	3prime_fragment	FALSE	canonical	3	454	junction_10	29.2567940827426	778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAAAAGAAAAGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	55957384	55953333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252
ENSMUSG00000040472.16_55953334_55959659_1	chr14	-	2421	17	FSM	ENSMUSG00000040472.16	ENSMUST00000227061.2	2882	17	0	461	0	0	multi-exon	FALSE	canonical	3	103	junction_16	117.751443064406	741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAAAAGAAAAGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	55959659	55953333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
ENSMUSG00000040472.16_55953782_55957384_1	chr14	-	1186	11	ISM	ENSMUSG00000040472.16	ENSMUST00000163889.3	1886	17	2336	0	206	0	3prime_fragment	FALSE	canonical	3	454	junction_10	29.2567940827426	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGCCAAGCTACCATTA	NA	False	NA	-19	True	AATAAA	-19	NA	55957384	55953781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252
ENSMUSG00000040472.16_55953782_55959659_2	chr14	-	1973	17	FSM	ENSMUSG00000040472.16	ENSMUST00000227061.2	2882	17	0	909	0	0	multi-exon	FALSE	canonical	3	103	junction_16	117.751443064406	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGCCAAGCTACCATTA	NA	False	NA	-19	True	AATAAA	-19	NA	55959659	55953781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
ENSMUSG00000040473.16_5697262_5714208_1	chr5	-	772	4	NNC	ENSMUSG00000040473.16	novel	2920	5	NA	NA	0	-432	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	4.49691252107735	33	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGCTGTATATGTTTGT	NA	False	NA	NA	False	AATAAA	-20	NA	5714208	5697261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_5697607_5699789_5699856_5707787_5707848_5713907
ENSMUSG00000040473.16_5697381_5714208_1	chr5	-	653	4	NNC	ENSMUSG00000040473.16	novel	2920	5	NA	NA	0	-551	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	4.49691252107735	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTAGAAGTACATTTTGC	NA	False	NA	NA	False	AATAAA	-18	NA	5714208	5697380	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_5697607_5699789_5699856_5707787_5707848_5713907
ENSMUSG00000040482.17_35055995_35058162_2	chr17	+	1623	6	NIC	ENSMUSG00000040482.17	novel	1447	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	143	junction_2	17.7696370249929	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTGCTGTGTCTGAATG	2976	False	NA	30	True	AATAAA	-19	NA	35055994	35058162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_35056731_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
ENSMUSG00000040488.19_27004565_27010103_1	chr7	-	1604	8	ISM	ENSMUSG00000040488.19	ENSMUST00000121175.8	5118	30	22985	0	0	0	3prime_fragment	FALSE	canonical	3	513	junction_4	58.3896132781808	381	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCGGCCTCTGCCTGCCTT	NA	False	NA	-6	True	ATTAAA	-16	NA	27010103	27004564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945
ENSMUSG00000040511.15_19638203_19655038_1	chr7	-	2158	8	FSM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	47	700	0	-700	multi-exon	FALSE	canonical	3	90	junction_4	10.2359909243845	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTTGTCAAAATTGTAG	9978	False	NA	NA	False	CATAAA	-25	NA	19655038	19638202	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19639118_19639703_19639739_19643105_19643229_19644529_19644682_19648662_19648790_19650798_19651096_19652486_19652835_19654877
ENSMUSG00000040521.12_126858317_126866672_1	chr10	-	1053	6	FSM	ENSMUSG00000040521.12	ENSMUST00000040560.11	1206	6	37	116	0	0	multi-exon	FALSE	canonical	3	855	junction_5	79.6728310027954	1343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAACCCTCAAATTTGTTT	NA	False	NA	-24	True	TATAAA	-20	NA	126866672	126858316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_126858796_126860804_126860893_126864233_126864357_126865422_126865552_126866331_126866506_126866612
ENSMUSG00000040521.12_126865636_126866688_1	chr10	-	946	2	ISM	ENSMUSG00000040521.12	ENSMUST00000134917.2	695	3	-16	545	-16	-545	5prime_fragment	FALSE	canonical	3	855	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGGTTTGGACATATTT	NA	False	NA	NA	False	TATAAA	-7	NA	126866688	126865635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_126866506_126866612
ENSMUSG00000040525.14_19513643_19515812_1	chr7	-	322	4	NNC	ENSMUSG00000040525.14	novel	1514	11	NA	NA	3553	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	4.64279609239471	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCCCGTGTGTGACAGAG	NA	False	NA	1	True	AATAAA	-20	NA	19515812	19513642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19513722_19514697_19514773_19514894_19515002_19515751
ENSMUSG00000040528.16_106659079_106670088_1	chr11	+	1128	8	NIC	ENSMUSG00000040528.16	novel	1234	8	NA	NA	13310	10468	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	123	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTGCTGCGGCGTCCCGC	NA	False	NA	NA	False	NA	NA	NA	106659078	106670088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669909
ENSMUSG00000040528.16_106659079_106670364_1	chr11	+	1404	8	NIC	ENSMUSG00000040528.16	novel	1234	8	NA	NA	13310	10744	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	266	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGTGCTGTAGACCACGCC	NA	False	NA	NA	False	NA	NA	NA	106659078	106670364	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669909
ENSMUSG00000040532.15_135038545_135041029_3	chr5	+	1095	6	NNC	ENSMUSG00000040532.15	novel	1493	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	221.685723491613	1755	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCGTTTTCACCACCGT	NA	False	NA	15	True	AATAAA	-22	NA	135038544	135041029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_135038694_135038835_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040746
ENSMUSG00000040532.15_135038545_135041029_4	chr5	+	1096	6	NNC	ENSMUSG00000040532.15	novel	1493	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	221.685723491613	2133	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCGTTTTCACCACCGT	NA	False	NA	15	True	AATAAA	-22	NA	135038544	135041029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_135038694_135038835_135038972_135039740_135039915_135040063_135040235_135040337_135040515_135040740
ENSMUSG00000040532.15_135038545_135041029_7	chr5	+	1243	5	FSM	ENSMUSG00000040532.15	ENSMUST00000154469.8	1473	5	235	-5	0	0	multi-exon	FALSE	canonical	3	552	junction_3	34.8926926447358	988	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCGTTTTCACCACCGT	NA	False	NA	15	True	AATAAA	-22	NA	135038544	135041029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
ENSMUSG00000040532.15_135038545_135041029_8	chr5	+	1070	6	NIC	ENSMUSG00000040532.15	novel	1493	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	225.356073803215	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCGTTTTCACCACCGT	NA	False	NA	15	True	AATAAA	-22	NA	135038544	135041029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_135038694_135038835_135038972_135039740_135039915_135040094_135040235_135040337_135040520_135040740
ENSMUSG00000040532.15_135040976_135042008_1	chr5	+	497	4	NIC	ENSMUSG00000040532.15	novel	1466	4	NA	NA	2149	979	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTTTGCCCTTCCAGGCA	NA	False	NA	NA	False	NA	NA	NA	135040975	135042008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_135041187_135041283_135041405_135041547_135041643_135041938
ENSMUSG00000040536.16_14955641_14966004_1	chr4	-	550	4	ISM	ENSMUSG00000040536.16	ENSMUST00000108273.2	2135	14	183790	712	182957	-712	3prime_fragment	FALSE	canonical	2	6	junction_1	0.816496580927726	24	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTGTGGTAAAAATGCTA	NA	False	NA	NA	False	AATAAA	-15	NA	14966004	14955640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_14955922_14957825_14957918_14960007_14960086_14965905
ENSMUSG00000040536.16_15052508_15148967_1	chr4	-	520	5	ISM	ENSMUSG00000040536.16	ENSMUST00000108273.2	2135	14	827	97579	-6	58454	internal_fragment	FALSE	canonical	3	19	junction_2	1.4790199457749	113	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTTCATTTTTTATA	-1	True	NA	NA	False	AATACA	-15	NA	15148967	15052507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_15052718_15065323_15065350_15111193_15111303_15140224_15140250_15148817
ENSMUSG00000040536.16_15134823_15148967_1	chr4	-	370	3	NNC	ENSMUSG00000040536.16	novel	4922	13	NA	NA	-6	-23861	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	11	33	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGGCTTATTCTGTGCT	-1	True	NA	NA	False	AATAAA	-25	NA	15148967	15134822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_15135018_15140224_15140250_15148817
ENSMUSG00000040557.15_134961222_134970088_2	chr5	+	1207	7	NIC	ENSMUSG00000040557.15	novel	2808	6	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	24	junction_6	36.2583323756991	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAGTGTGTACTGTAACA	3412	False	NA	6	True	NA	NA	NA	134961221	134970088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_134961265_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310_134969548_134969745
ENSMUSG00000040557.15_134961222_134970088_3	chr5	+	1306	6	FSM	ENSMUSG00000040557.15	ENSMUST00000111219.8	1790	6	-5	489	0	2	multi-exon	FALSE	canonical	2	10	junction_1	38.8947297201048	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAGTGTGTACTGTAACA	3412	False	NA	6	True	NA	NA	NA	134961221	134970088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_134961265_134961574_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
ENSMUSG00000040557.15_134961222_134970088_4	chr5	+	1405	6	FSM	ENSMUSG00000040557.15	ENSMUST00000047196.14	2808	6	0	1403	0	2	multi-exon	FALSE	canonical	3	37	junction_1	28.2460616723819	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAGTGTGTACTGTAACA	3412	False	NA	6	True	NA	NA	NA	134961221	134970088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_134961265_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
ENSMUSG00000040562.13_107889018_107893737_1	chr3	-	1383	7	NIC	ENSMUSG00000040562.13	novel	1064	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	637	junction_1	38.7298334620742	2065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTCAGTGTATTATTTT	2074	False	NA	-4	True	AATAAA	-13	NA	107893737	107889017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_107889455_107891251_107891363_107891444_107891541_107892364_107892466_107892562_107892645_107892933_107893426_107893673
ENSMUSG00000040562.13_107889018_107893737_2	chr3	-	372	3	NNC	ENSMUSG00000040562.13	novel	1064	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	357.5	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTCAGTGTATTATTTT	2074	False	NA	-4	True	AATAAA	-13	NA	107893737	107889017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_107889250_107893349_107893426_107893673
ENSMUSG00000040562.13_107889018_107893737_3	chr3	-	1024	8	NNC	ENSMUSG00000040562.13	novel	1064	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	239.244303452964	3118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTCAGTGTATTATTTT	2074	False	NA	-4	True	AATAAA	-13	NA	107893737	107889017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_107889455_107891251_107891363_107891444_107891541_107892364_107892454_107892558_107892645_107892933_107892999_107893349_107893426_107893673
ENSMUSG00000040562.13_107889018_107893737_4	chr3	-	1027	8	NNC	ENSMUSG00000040562.13	novel	1064	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	239.150793519102	3134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTCAGTGTATTATTTT	2074	False	NA	-4	True	AATAAA	-13	NA	107893737	107889017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_107889455_107891251_107891363_107891444_107891532_107892360_107892466_107892562_107892645_107892933_107892999_107893349_107893426_107893673
ENSMUSG00000040564.15_19423406_19426563_1	chr7	-	393	4	NNC	ENSMUSG00000040564.15	novel	432	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	542.605033355038	4609	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGAAGTGCTTTGG	NA	False	NA	-4	True	AATAAA	-19	NA	19426563	19423405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19423562_19425812_19425944_19426335_19426412_19426533
ENSMUSG00000040564.15_19423406_19426563_3	chr7	-	404	4	NNC	ENSMUSG00000040564.15	novel	432	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	542.605033355038	7576	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGAAGTGCTTTGG	NA	False	NA	-4	True	AATAAA	-19	NA	19426563	19423405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19423562_19425812_19425955_19426335_19426412_19426533
ENSMUSG00000040564.15_19423406_19426563_4	chr7	-	526	3	NNC	ENSMUSG00000040564.15	novel	532	3	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_2	637	2195	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGAAGTGCTTTGG	NA	False	NA	-4	True	AATAAA	-19	NA	19426563	19423405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19423562_19425812_19425955_19426335
ENSMUSG00000040586.9_165173932_165176264_1	chrX	-	436	4	ISM	ENSMUSG00000040586.9	ENSMUST00000049501.9	4453	23	47436	903	47436	-903	3prime_fragment	FALSE	canonical	3	171	junction_3	11.2644968324772	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTGTATTTTTTTAACA	NA	False	NA	NA	False	ATTAAA	-14	NA	165176264	165173931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_165174055_165174886_165174955_165175413_165175567_165176172
ENSMUSG00000040591.19_91108589_91274988_1	chr2	-	1564	9	FSM	ENSMUSG00000040591.19	ENSMUST00000102594.11	1977	9	-1	414	0	0	multi-exon	TRUE	canonical	3	72	junction_5	19.7673974007708	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAATGAGTCTAAAGCCAG	NA	False	NA	-7	True	AATAAA	-18	NA	91274988	91108588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_91109303_91109534_91109599_91112090_91112201_91112809_91113006_91114579_91114666_91135093_91135179_91214073_91214205_91252210_91252314_91274913
ENSMUSG00000040591.19_91134111_91275025_1	chr2	-	613	5	NNC	ENSMUSG00000040591.19	novel	732	4	NA	NA	0	645	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	49.8416241709678	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTATTGTGTGCAGTGCT	NA	False	NA	NA	False	AAAAAG	-17	NA	91275025	91134110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_91134293_91135093_91135179_91214073_91214205_91252210_91252314_91274913
ENSMUSG00000040599.14_70910437_70918197_1	chr11	+	2721	4	FSM	ENSMUSG00000040599.14	ENSMUST00000164220.8	1416	4	0	-1305	0	0	multi-exon	FALSE	canonical	3	11	junction_1	46.3057471835	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTATTATTGCTTAAT	NA	False	NA	16	True	AATAAA	-37	NA	70910436	70918197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70910550_70910831_70911016_70915375_70915538_70915935
ENSMUSG00000040599.14_70910688_70918197_1	chr11	+	2752	3	FSM	ENSMUSG00000040599.14	ENSMUST00000048807.12	3003	3	251	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	24	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTATTATTGCTTAAT	NA	False	NA	16	True	AATAAA	-37	NA	70910687	70918197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70911016_70915375_70915538_70915935
ENSMUSG00000040616.4_141758303_141811942_1	chr4	-	1779	3	NNC	ENSMUSG00000040616.4	novel	1875	3	NA	NA	-327	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	75.5	960	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGACCTCATTCAGTCA	9873	False	NA	-6	True	AATAAA	-18	NA	141811942	141758302	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_141759406_141764715_141765245_141811795
ENSMUSG00000040618.8_55777723_55786392_1	chr14	+	2318	10	FSM	ENSMUSG00000040618.8	ENSMUST00000048781.4	3400	10	0	1082	0	1	multi-exon	FALSE	canonical	3	1356	junction_5	122.962304772893	1887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCCTGTGTCTGCATAGG	8891	False	NA	32	True	NA	NA	NA	55777722	55786392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
ENSMUSG00000040618.8_55777846_55786329_1	chr14	+	1944	9	NIC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_4	532.016447114185	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	9014	False	NA	27	True	ATTAAA	-24	NA	55777845	55786329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
ENSMUSG00000040618.8_55777846_55786329_2	chr14	+	2127	10	NNC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_9	498.785413668933	399	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	9014	False	NA	27	True	ATTAAA	-24	NA	55777845	55786329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785766
ENSMUSG00000040618.8_55777846_55786329_3	chr14	+	2132	10	FSM	ENSMUSG00000040618.8	ENSMUST00000048781.4	3400	10	123	1145	0	0	multi-exon	FALSE	canonical	3	1356	junction_5	122.962304772893	1450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	9014	False	NA	27	True	ATTAAA	-24	NA	55777845	55786329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
ENSMUSG00000040621.15_164953450_164972800_1	chrX	+	1154	4	FSM	ENSMUSG00000040621.15	ENSMUST00000056410.11	1862	4	0	708	0	0	multi-exon	FALSE	canonical	3	11	junction_1	17.1529071070248	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTAAGCCACGTGTCATT	NA	False	NA	NA	False	CATAAA	-2	NA	164953449	164972800	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_164953547_164961787_164961827_164963348_164963806_164972239
ENSMUSG00000040621.15_164953450_164972800_2	chrX	+	1263	5	FSM	ENSMUSG00000040621.15	ENSMUST00000087169.11	1928	5	-41	706	0	0	multi-exon	FALSE	canonical	1	1	junction_1	20.8371663140649	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTAAGCCACGTGTCATT	NA	False	NA	NA	False	CATAAA	-2	NA	164953449	164972800	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_164953547_164961529_164961639_164961787_164961827_164963348_164963806_164972239
ENSMUSG00000040621.15_164953450_164972800_3	chrX	+	1332	6	NNC	ENSMUSG00000040621.15	novel	1389	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	18.6719040271741	126	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTAAGCCACGTGTCATT	NA	False	NA	NA	False	CATAAA	-2	NA	164953449	164972800	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_164953547_164959840_164959999_164960055_164960076_164961787_164961827_164963348_164963806_164972239
ENSMUSG00000040631.9_95584146_95590539_1	chr8	-	1181	9	NIC	ENSMUSG00000040631.9	novel	2590	9	NA	NA	7293	6310	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	13660	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCCTGCGCGGCCACCAGC	NA	False	NA	NA	False	NA	NA	NA	95590539	95584145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589318_95589437_95589513_95590079
ENSMUSG00000040640.12_27344385_27375762_1	chr14	+	1084	3	NIC	ENSMUSG00000040640.12	novel	6233	20	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	11	226	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATTGTCTGTTTATTT	2326	False	NA	18	True	ATTAAA	-15	NA	27344384	27375762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_27344572_27374643_27375441_27375662
ENSMUSG00000040640.12_27374886_27375762_1	chr14	+	655	2	ISM	ENSMUSG00000040640.12	ENSMUST00000210327.2	1099	4	29330	-3	102	3	3prime_fragment	FALSE	canonical	3	57	junction_1	0	172	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATTGTCTGTTTATTT	NA	False	NA	18	True	ATTAAA	-15	NA	27374885	27375762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_27375441_27375662
ENSMUSG00000040640.12_27374988_27375762_1	chr14	+	553	2	ISM	ENSMUSG00000040640.12	ENSMUST00000210327.2	1099	4	29432	-3	204	3	3prime_fragment	FALSE	canonical	3	57	junction_1	0	158	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATTGTCTGTTTATTT	NA	False	NA	18	True	ATTAAA	-15	NA	27374987	27375762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_27375441_27375662
ENSMUSG00000040640.12_27375208_27375762_1	chr14	+	333	2	ISM	ENSMUSG00000040640.12	ENSMUST00000210327.2	1099	4	29652	-3	424	3	3prime_fragment	FALSE	canonical	3	57	junction_1	0	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATTGTCTGTTTATTT	NA	False	NA	18	True	ATTAAA	-15	NA	27375207	27375762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_27375441_27375662
ENSMUSG00000040652.17_65583861_65597582_1	chr9	+	1813	5	NIC	ENSMUSG00000040652.17	novel	1843	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	365	junction_4	22.3983816379666	1365	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTCTGTCTTTTTATTC	4635	False	NA	23	True	AATAAA	-17	NA	65583860	65597582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_65584048_65593477_65593636_65595079_65595256_65596102_65596189_65596376
ENSMUSG00000040657.4_122364359_122369646_1	chr6	+	788	2	NNC	ENSMUSG00000040657.4	novel	817	2	NA	NA	-3979	0	intron_retention	FALSE	canonical	0	0	junction_1	0	36	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGCGTTAGTCACTGGG	NA	False	NA	NA	False	AATAAA	-16	NA	122364358	122369646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_122364483_122368982
ENSMUSG00000040658.8_46807637_46810156_1	chr17	+	796	4	FSM	ENSMUSG00000040658.8	ENSMUST00000046497.8	1190	4	0	394	0	-394	multi-exon	FALSE	canonical	3	629	junction_2	31.4960314960472	5278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCTCTTTGGCCCTGGTC	NA	False	NA	NA	False	NA	NA	NA	46807636	46810156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_46807899_46809350_46809420_46809568_46809680_46809802
ENSMUSG00000040658.8_46807637_46810550_1	chr17	+	658	5	NNC	ENSMUSG00000040658.8	novel	1190	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_4	278.036306082497	1048	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCACGGTGTC	NA	False	NA	14	True	NA	NA	NA	46807636	46810550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_46807899_46809350_46809420_46809568_46809680_46809802_46809894_46810425
ENSMUSG00000040667.12_70833903_70860785_1	chr11	-	2414	17	NNC	ENSMUSG00000040667.12	novel	2389	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	226.14538327147	460	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACTTTGCTTTACAATT	NA	False	NA	-4	True	AATAAA	-44	NA	70860785	70833902	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847144_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
ENSMUSG00000040675.18_4040110_4106111_1	chr10	+	1013	5	ISM	ENSMUSG00000040675.18	ENSMUST00000117291.8	3669	28	116992	0	57830	0	3prime_fragment	FALSE	canonical	3	315	junction_4	75.4300172345201	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTCAGCTAGTAAAGCCA	NA	False	NA	14	True	AATAAA	-19	NA	4040109	4106111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105541
ENSMUSG00000040681.17_95922788_95928929_1	chr16	-	1199	5	NNC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	0	646	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2886.14405392385	62031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAAATGCCTGATTAAT	NA	False	NA	-11	True	AATAAA	-19	NA	95928929	95922787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_95923618_95925922_95926046_95928352_95928404_95928510_95928535_95928758
ENSMUSG00000040681.17_95922788_95928929_2	chr16	-	1204	6	FSM	ENSMUSG00000040681.17	ENSMUST00000050884.16	2174	6	0	970	0	646	multi-exon	FALSE	canonical	3	5886	junction_4	404.27841891449	63425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAAATGCCTGATTAAT	NA	False	NA	-11	True	AATAAA	-19	NA	95928929	95922787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928631_95928662_95928789
ENSMUSG00000040681.17_95922788_95928929_3	chr16	-	1205	5	NNC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	0	646	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2886.14405392385	60397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAAATGCCTGATTAAT	NA	False	NA	-11	True	AATAAA	-19	NA	95928929	95922787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928758
ENSMUSG00000040681.17_95922788_95928929_4	chr16	-	1175	4	NNC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	0	646	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3210.85391895815	3499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAAATGCCTGATTAAT	NA	False	NA	-11	True	AATAAA	-19	NA	95928929	95922787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_95923618_95925922_95926046_95928352_95928404_95928758
ENSMUSG00000040681.17_95922788_95928929_5	chr16	-	1181	4	NNC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	0	646	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3210.85391895815	4960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAAATGCCTGATTAAT	NA	False	NA	-11	True	AATAAA	-19	NA	95928929	95922787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_95923618_95925922_95926046_95928352_95928404_95928752
ENSMUSG00000040681.17_95923251_95928929_1	chr16	-	718	4	NNC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	0	183	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3210.85391895815	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCGTCTCAGTCGTGCA	NA	False	NA	-11	True	AATACA	-19	NA	95928929	95923250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_95923618_95925922_95926046_95928352_95928404_95928752
ENSMUSG00000040688.17_24919625_24926606_1	chr17	-	2496	22	FSM	ENSMUSG00000040688.17	ENSMUST00000126319.8	5226	22	28	2702	-1	-193	multi-exon	FALSE	canonical	3	500	junction_14	40.675587289682	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTCTCATGTGAATC	NA	False	NA	-24	True	NA	NA	NA	24926606	24919624	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24919760_24919849_24920009_24920093_24920166_24920253_24920358_24920576_24920636_24920715_24920873_24920950_24921022_24921118_24921350_24921449_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924292_24924370_24924456_24924538_24924681_24924774_24924823_24924908_24925005_24925088_24925141_24926497
ENSMUSG00000040694.5_48726259_48739646_1	chr17	-	1108	3	FSM	ENSMUSG00000040694.5	ENSMUST00000046549.5	1420	3	312	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	11.5	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGGCCTGTTCTCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	48739646	48726258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_48726662_48729968_48730534_48739506
ENSMUSG00000040694.5_48726259_48739760_1	chr17	-	1222	3	FSM	ENSMUSG00000040694.5	ENSMUST00000046549.5	1420	3	198	0	-114	0	multi-exon	FALSE	canonical	3	57	junction_2	11.5	646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGGCCTGTTCTCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	48739760	48726258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_48726662_48729968_48730534_48739506
ENSMUSG00000040694.5_48738531_48739760_1	chr17	-	431	2	FSM	ENSMUSG00000040694.5	ENSMUST00000233707.2	317	2	-114	0	-114	0	multi-exon	FALSE	canonical	2	5	junction_1	0	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTATTGCTCCAGGCCTG	NA	False	NA	NA	False	NA	NA	NA	48739760	48738530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_48738708_48739506
ENSMUSG00000040697.11_141490693_141495360_1	chr4	-	1100	6	ISM	ENSMUSG00000040697.11	ENSMUST00000038014.11	5969	15	22842	3193	6604	-3193	3prime_fragment	TRUE	canonical	3	45	junction_4	2.57681974534502	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAACATCTTCCTTCCCC	NA	False	NA	NA	False	AGTAAA	-21	NA	141495360	141490692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_141491206_141491878_141492050_141493794_141493894_141493972_141494054_141495018_141495096_141495201
ENSMUSG00000040699.14_106048867_106051304_1	chr11	-	1192	5	NIC	ENSMUSG00000040699.14	novel	2950	5	NA	NA	-336	273	combination_of_known_splicesites	FALSE	canonical	3	12	junction_4	112.144995430024	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGACTCTCTTGTGTGGC	NA	False	NA	-14	True	TTTAAA	-15	NA	106051304	106048866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_106049660_106049760_106049901_106049987_106050033_106050173_106050269_106051185
ENSMUSG00000040713.13_165591315_165601629_1	chr1	+	905	4	NNC	ENSMUSG00000040713.13	novel	2163	4	NA	NA	0	142	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	230.010144703808	2300	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTCAGAGAAAAATGCCAT	NA	False	NA	18	True	AAAAAG	-25	NA	165591314	165601629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_165591708_165597391_165597502_165598200_165598386_165601412
ENSMUSG00000040713.13_165596746_165601629_1	chr1	+	647	4	NNC	ENSMUSG00000040713.13	novel	2163	4	NA	NA	-299	142	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	224.845626053867	91	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTCAGAGAAAAATGCCAT	NA	False	NA	18	True	AAAAAG	-25	NA	165596745	165601629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_165596871_165597381_165597502_165598200_165598386_165601412
ENSMUSG00000040720.16_11546033_11549885_1	chr4	+	753	3	ISM	ENSMUSG00000040720.16	ENSMUST00000108307.3	6571	25	59990	799	59990	-799	3prime_fragment	FALSE	canonical	3	84	junction_2	2	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGTATATATTTTTCCC	NA	False	NA	15	True	AATAAA	-20	NA	11546032	11549885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_11546301_11548730_11548875_11549544
ENSMUSG00000040722.8_57350894_57375343_2	chr9	-	1060	7	FSM	ENSMUSG00000040722.8	ENSMUST00000214256.2	1025	7	0	-35	0	0	multi-exon	FALSE	canonical	3	62	junction_6	45.7262385167301	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTCTGTGTGGTGACCA	NA	False	NA	NA	False	GGGGCT	-8	NA	57375343	57350893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638_57358768_57359262_57359318_57375098
ENSMUSG00000040726.11_26716373_26724286_1	chr14	+	1016	5	NNC	ENSMUSG00000040726.11	novel	983	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	69.4383719567215	778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGTATTTTAATATACTTT	NA	False	NA	NA	False	AATAAA	-18	NA	26716372	26724286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_26716480_26722550_26722834_26723328_26723529_26723775_26723878_26723962
ENSMUSG00000040726.11_26722630_26724286_1	chr14	+	710	4	NNC	ENSMUSG00000040726.11	novel	1141	4	NA	NA	311	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	79.6157438366726	75	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGTATTTTAATATACTTT	NA	False	NA	NA	False	AATAAA	-18	NA	26722629	26724286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_26722834_26723448_26723529_26723775_26723878_26723962
ENSMUSG00000040726.11_26722630_26725207_1	chr14	+	1060	5	NNC	ENSMUSG00000040726.11	novel	983	5	NA	NA	311	921	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	65.6620133715073	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAGCTTTCAAATTCATTT	NA	False	NA	12	True	AATAAA	-25	NA	26722629	26725207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_26722834_26723328_26723529_26723775_26723878_26723962_26724062_26724752
ENSMUSG00000040731.14_134648731_134668182_1	chr5	-	2408	7	FSM	ENSMUSG00000040731.14	ENSMUST00000202622.4	2726	7	162	156	-3	0	multi-exon	FALSE	canonical	3	761	junction_3	647.667803224256	2665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTATGCTTGTCTTTCTGG	2199	False	NA	-4	True	AATAAA	-18	NA	134668182	134648730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_134650503_134650802_134650941_134653294_134653355_134654219_134654317_134654394_134654460_134656441_134656630_134668094
ENSMUSG00000040731.14_134650176_134668182_1	chr5	-	903	6	FSM	ENSMUSG00000040731.14	ENSMUST00000036125.10	2367	6	19	1445	-3	-1445	multi-exon	FALSE	canonical	3	1750	junction_2	182.920310517996	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTAGTGCCTGTTTTGTGCT	2199	False	NA	1	True	NA	NA	NA	134668182	134650175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_134650503_134650802_134650941_134654219_134654317_134654394_134654460_134656441_134656630_134668094
ENSMUSG00000040731.14_134650176_134668182_2	chr5	-	963	7	FSM	ENSMUSG00000040731.14	ENSMUST00000202622.4	2726	7	162	1601	-3	-1445	multi-exon	FALSE	canonical	3	761	junction_3	647.667803224256	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTAGTGCCTGTTTTGTGCT	2199	False	NA	1	True	NA	NA	NA	134668182	134650175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_134650503_134650802_134650941_134653294_134653355_134654219_134654317_134654394_134654460_134656441_134656630_134668094
ENSMUSG00000040746.16_70535022_70538305_1	chr11	+	1609	8	NIC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	-3039	-627	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAATTGGCCTTTCTTAC	6099	False	NA	NA	False	NA	NA	NA	70535021	70538305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_70535748_70535864_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70538116
ENSMUSG00000040746.16_70535149_70538305_1	chr11	+	1482	8	NIC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	-2912	-627	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAATTGGCCTTTCTTAC	6226	False	NA	NA	False	NA	NA	NA	70535148	70538305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_70535748_70535864_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70538116
ENSMUSG00000040746.16_70538113_70542247_1	chr11	+	1742	10	NNC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_1	154.113954952532	1033	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9190	False	NA	30	True	AATAAA	-31	NA	70538112	70542247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_70538140_70538230_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
ENSMUSG00000040746.16_70538113_70542247_2	chr11	+	1297	10	NNC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_1	144.752662612241	470	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9190	False	NA	30	True	AATAAA	-31	NA	70538112	70542247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_70538140_70538675_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
ENSMUSG00000040746.16_70538113_70542247_3	chr11	+	1910	8	ISM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	0	0	0	0	intron_retention	FALSE	canonical	3	485	junction_5	20.0173394223863	961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9190	False	NA	30	True	AATAAA	-31	NA	70538112	70542247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589
ENSMUSG00000040746.16_70538113_70542247_4	chr11	+	1406	10	NIC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_1	157.860698085369	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9190	False	NA	30	True	AATAAA	-31	NA	70538112	70542247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_70538140_70538566_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
ENSMUSG00000040746.16_70538395_70542247_1	chr11	+	1628	8	ISM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	282	0	0	0	intron_retention	FALSE	canonical	3	485	junction_5	20.0173394223863	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9472	False	NA	30	True	AATAAA	-31	NA	70538394	70542247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589
ENSMUSG00000040746.16_70538395_70542247_2	chr11	+	1551	9	FSM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	282	0	0	0	multi-exon	FALSE	canonical	3	485	junction_5	18.8244355825082	770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9472	False	NA	30	True	AATAAA	-31	NA	70538394	70542247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
ENSMUSG00000040746.16_70540553_70542247_1	chr11	+	966	4	ISM	ENSMUSG00000040746.16	ENSMUST00000151034.9	937	7	1652	-330	-209	0	3prime_fragment	FALSE	canonical	3	525	junction_3	9.39266853573691	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	25	False	NA	30	True	AATAAA	-31	NA	70540552	70542247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_70540844_70540951_70541046_70541589_70541671_70541747
ENSMUSG00000040746.16_70540553_70542247_2	chr11	+	897	4	ISM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	2440	0	-209	0	intron_retention	FALSE	canonical	3	485	junction_1	27.4752413799932	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	25	False	NA	30	True	AATAAA	-31	NA	70540552	70542247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_70540592_70540737_70540844_70540951_70541046_70541589
ENSMUSG00000040746.16_70540553_70542247_3	chr11	+	1043	3	ISM	ENSMUSG00000040746.16	ENSMUST00000151034.9	937	7	1652	-330	-209	0	intron_retention	FALSE	canonical	3	537	junction_2	5.5	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	25	False	NA	30	True	AATAAA	-31	NA	70540552	70542247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_70540844_70540951_70541046_70541589
ENSMUSG00000040749.12_162853701_162859489_1	chrX	-	1983	4	FSM	ENSMUSG00000040749.12	ENSMUST00000134272.2	803	4	0	-1180	0	0	multi-exon	FALSE	canonical	3	72	junction_3	219.75794765049	1268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCAGGTTTTTCTCACTT	NA	False	NA	-18	True	AATAAA	-15	NA	162859489	162853700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859182
ENSMUSG00000040760.12_26644794_26692420_1	chr14	-	3024	22	FSM	ENSMUSG00000040760.12	ENSMUST00000036570.5	7642	22	769	3849	0	-3849	multi-exon	FALSE	canonical	3	262	junction_6	31.5683759207952	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATCTTTTGAATTTCAGAC	NA	False	NA	NA	False	AATAAA	-24	NA	26692420	26644793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_26645829_26647373_26647464_26647915_26647967_26649685_26649833_26650396_26650434_26650515_26650691_26662200_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671398_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26692357
ENSMUSG00000040760.12_26645501_26692478_1	chr14	-	2375	22	FSM	ENSMUSG00000040760.12	ENSMUST00000036570.5	7642	22	711	4556	-16	-4556	multi-exon	FALSE	canonical	3	262	junction_6	31.5683759207952	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGCTTTCCTAAACAAGA	NA	False	NA	-1	True	AATAAA	-22	NA	26692478	26645500	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_26645829_26647373_26647464_26647915_26647967_26649685_26649833_26650396_26650434_26650515_26650691_26662200_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671398_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26692357
ENSMUSG00000040767.11_32155446_32158873_1	chr11	+	679	5	FSM	ENSMUSG00000040767.11	ENSMUST00000039601.10	821	5	31	111	0	0	multi-exon	FALSE	canonical	3	400	junction_3	16.768646337734	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGGATTGTGGAAAATTCCT	NA	False	NA	-90	True	NA	NA	NA	32155445	32158873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_32155664_32156959_32157051_32157556_32157663_32158333_32158409_32158684
ENSMUSG00000040767.11_32155446_32158989_1	chr11	+	788	5	NIC	ENSMUSG00000040767.11	novel	821	5	NA	NA	0	5	combination_of_known_splicesites	FALSE	canonical	2	5	junction_2	179.342375081853	5776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAAAGCCATAGTACTCT	NA	False	NA	26	True	AATAAA	-27	NA	32155445	32158989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_32155664_32156959_32157044_32157556_32157663_32158333_32158409_32158684
ENSMUSG00000040767.11_32155446_32158989_2	chr11	+	778	5	NIC	ENSMUSG00000040767.11	novel	821	5	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	8	junction_2	178.047044345027	5562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAAAGCCATAGTACTCT	NA	False	NA	26	True	AATAAA	-27	NA	32155445	32158989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_32155664_32156959_32157051_32157573_32157663_32158333_32158409_32158684
ENSMUSG00000040771.15_48717042_48724283_1	chr17	+	1320	6	NNC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	387.458075151364	3066	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGGTTTGCACACATGAA	NA	False	NA	10	True	AATAAA	-18	NA	48717041	48724283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_48717401_48717855_48717933_48718291_48718437_48721258_48721313_48722248_48722362_48723711
ENSMUSG00000040771.15_48717042_48724283_2	chr17	+	1185	6	NNC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	391.766767350167	1814	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGGTTTGCACACATGAA	NA	False	NA	10	True	AATAAA	-18	NA	48717041	48724283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_48717266_48717855_48717933_48718291_48718437_48721258_48721313_48722248_48722362_48723711
ENSMUSG00000040771.15_48717042_48724283_3	chr17	+	1050	6	NNC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	419.268219639886	779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGGTTTGCACACATGAA	NA	False	NA	10	True	AATAAA	-18	NA	48717041	48724283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_48717123_48717852_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ENSMUSG00000040771.15_48717120_48724283_1	chr17	+	1112	6	FSM	ENSMUSG00000040771.15	ENSMUST00000046651.7	1135	6	12	11	0	1	multi-exon	FALSE	canonical	0	0	junction_5	381.26547181721	1816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGGTTTGCACACATGAA	NA	False	NA	10	True	AATAAA	-18	NA	48717119	48724283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_48717266_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ENSMUSG00000040771.15_48717270_48724283_1	chr17	+	1092	6	NNC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	150	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	387.458075151364	2142	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGGTTTGCACACATGAA	NA	False	NA	10	True	AATAAA	-18	NA	48717269	48724283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_48717401_48717855_48717933_48718291_48718437_48721258_48721313_48722248_48722362_48723711
ENSMUSG00000040771.15_48717270_48724283_2	chr17	+	1097	6	FSM	ENSMUSG00000040771.15	ENSMUST00000167180.8	1324	6	228	-1	150	1	multi-exon	FALSE	canonical	0	0	junction_5	371.627232586634	2578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGGTTTGCACACATGAA	NA	False	NA	10	True	AATAAA	-18	NA	48717269	48724283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_48717401_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ENSMUSG00000040771.15_48717270_48724283_3	chr17	+	1038	5	NIC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	150	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	381.49795215702	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGGTTTGCACACATGAA	NA	False	NA	10	True	AATAAA	-18	NA	48717269	48724283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_48717401_48717855_48717933_48718291_48718437_48722248_48722362_48723711
ENSMUSG00000040774.16_106410299_106454898_1	chr3	-	2128	9	NIC	ENSMUSG00000040774.16	novel	2121	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_8	78.1548942805247	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTTTTTTCTCAATTTT	NA	False	NA	-5	True	AATAAA	-16	NA	106454898	106410298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106438452_106438595_106440670_106440819_106446505_106446920_106454738
ENSMUSG00000040774.16_106410299_106455059_1	chr3	-	2025	9	NIC	ENSMUSG00000040774.16	novel	2121	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	80.7074191137345	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTTTTTTCTCAATTTT	NA	False	NA	-5	True	AATAAA	-16	NA	106455059	106410298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106438452_106438595_106440670_106440819_106446505_106446913_106454995
ENSMUSG00000040774.16_106410299_106455059_2	chr3	-	2032	9	FSM	ENSMUSG00000040774.16	ENSMUST00000068301.11	2814	9	59	723	0	0	multi-exon	FALSE	canonical	3	190	junction_8	25.7924407530579	774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTTTTTTCTCAATTTT	NA	False	NA	-5	True	AATAAA	-16	NA	106455059	106410298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106438452_106438595_106440670_106440819_106446505_106446920_106454995
ENSMUSG00000040782.13_159170376_159172684_1	chr1	+	340	2	FSM	ENSMUSG00000040782.13	ENSMUST00000192841.2	776	2	450	-14	450	14	multi-exon	FALSE	canonical	3	400	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTATTGAGCCACAGCTGA	NA	False	NA	NA	False	AATAAA	-25	NA	159170375	159172684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_159170422_159172390
ENSMUSG00000040782.13_159170376_159173016_1	chr1	+	672	2	FSM	ENSMUSG00000040782.13	ENSMUST00000192841.2	776	2	450	-346	450	346	multi-exon	FALSE	canonical	3	400	junction_1	0	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACTGGTGAGTAATTTTA	NA	False	NA	NA	False	AAGAAA	-3	NA	159170375	159173016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_159170422_159172390
ENSMUSG00000040785.20_94165306_94171571_1	chr16	+	652	5	NNC	ENSMUSG00000040785.20	novel	7415	46	NA	NA	-6171	-16657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	230	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCGACGCGGCGACTGCGC	NA	False	NA	NA	False	GGGGCT	-36	NA	94165305	94171571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171556
ENSMUSG00000040785.20_94165306_94171571_2	chr16	+	693	5	NNC	ENSMUSG00000040785.20	novel	7415	46	NA	NA	-6171	-16657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	600	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCGACGCGGCGACTGCGC	NA	False	NA	NA	False	GGGGCT	-36	NA	94165305	94171571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171515
ENSMUSG00000040795.13_129509412_129512878_1	chr4	-	2132	5	FSM	ENSMUSG00000040795.13	ENSMUST00000046675.12	2639	5	14	493	-5	140	multi-exon	FALSE	canonical	3	109	junction_1	14.396180048888	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTCACGCCTTTAATCCC	NA	False	NA	-20	True	NA	NA	NA	129512878	129509411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
ENSMUSG00000040811.16_18936305_18940405_1	chr7	+	839	4	ISM	ENSMUSG00000040811.16	ENSMUST00000048502.10	2275	19	21176	-1	20774	1	3prime_fragment	FALSE	canonical	3	145	junction_1	10.2306728354819	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCTGGAGTCTGGTCTA	NA	False	NA	23	True	AATACA	-15	NA	18936304	18940405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_18936522_18936901_18936998_18937826_18937958_18940010
ENSMUSG00000040813.17_106535951_106563132_1	chr9	-	1391	6	NIC	ENSMUSG00000040813.17	novel	1391	6	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_4	172.206387802543	749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGATTTGAGTTGGTTTT	7862	False	NA	-6	True	AATAAA	-22	NA	106563132	106535950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562145_106562195_106563033
ENSMUSG00000040813.17_106535951_106563132_2	chr9	-	1113	5	NIC	ENSMUSG00000040813.17	novel	1391	6	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_3	189.758234340436	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGATTTGAGTTGGTTTT	7862	False	NA	-6	True	AATAAA	-22	NA	106563132	106535950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_106536507_106539558_106539728_106550715_106550938_106562127_106562195_106563033
ENSMUSG00000040822.8_54923694_54928198_1	chr14	+	1439	3	FSM	ENSMUSG00000040822.8	ENSMUST00000228027.2	811	3	0	-628	0	0	multi-exon	FALSE	canonical	3	26	junction_1	179.5	2257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTACTGGTGATTCACAT	NA	False	NA	NA	False	AATAAA	-26	NA	54923693	54928198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_54924111_54924493_54924578_54927260
ENSMUSG00000040822.8_54924501_54928198_1	chr14	+	1015	2	FSM	ENSMUSG00000040822.8	ENSMUST00000038539.8	1843	2	828	0	0	0	multi-exon	FALSE	canonical	3	385	junction_1	0	2100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTACTGGTGATTCACAT	NA	False	NA	NA	False	AATAAA	-26	NA	54924500	54928198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_54924578_54927260
ENSMUSG00000040824.4_18883647_18886651_1	chr7	+	604	3	FSM	ENSMUSG00000040824.4	ENSMUST00000049294.4	1420	3	0	816	0	-816	multi-exon	FALSE	canonical	3	3249	junction_1	86	64878	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTTTTCCAGTGGTCT	NA	False	NA	1	True	AATAAA	-19	NA	18883646	18886651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_18883820_18885142_18885323_18886400
ENSMUSG00000040824.4_18883784_18886651_1	chr7	+	467	3	FSM	ENSMUSG00000040824.4	ENSMUST00000049294.4	1420	3	137	816	0	-816	multi-exon	FALSE	canonical	3	3249	junction_1	86	59761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTTTTCCAGTGGTCT	NA	False	NA	1	True	AATAAA	-19	NA	18883783	18886651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_18883820_18885142_18885323_18886400
ENSMUSG00000040828.11_56969693_56971456_1	chr17	+	734	3	ISM	ENSMUSG00000040828.11	ENSMUST00000233947.2	1617	12	10911	-2	10911	0	3prime_fragment	FALSE	canonical	3	13	junction_1	1.5	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATCAGGTTGCTAAGTGC	NA	False	NA	14	True	AATAAA	-15	NA	56969692	56971456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_56969846_56970267_56970426_56971033
ENSMUSG00000040829.15_70346016_70350810_1	chr11	+	1492	5	NIC	ENSMUSG00000040829.15	novel	362	2	NA	NA	-4243	-878	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCAAGGTGAAGCAGTCAAA	NA	False	NA	NA	False	NA	NA	NA	70346015	70350810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_70346271_70346480_70346889_70349570_70349654_70349854_70349994_70350203
ENSMUSG00000040840.8_54879618_54891138_1	chr14	+	2434	12	Genic_Genomic	ENSMUSG00000091306.3_ENSMUSG00000040840.8	novel	968	6	NA	NA	1209	-926	multi-exon	FALSE	non_canonical	0	0	junction_1	0	972	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCCCGTGTGTGCGGAT	NA	False	NA	NA	False	NA	NA	NA	54879617	54891138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr14_+_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890991
ENSMUSG00000040840.8_54879618_54891138_2	chr14	+	2289	12	Genic_Genomic	ENSMUSG00000091306.3_ENSMUSG00000040840.8	novel	968	6	NA	NA	1209	-926	multi-exon	FALSE	non_canonical	0	0	junction_1	0	947	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCCCGTGTGTGCGGAT	NA	False	NA	NA	False	NA	NA	NA	54879617	54891138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr14_+_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54891136
ENSMUSG00000040842.18_140842624_140866644_1	chr4	-	910	3	NNC	ENSMUSG00000040842.18	novel	3200	3	NA	NA	394	1254	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	228	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTCTTTTTTTTTTTTT	NA	False	NA	-19	True	NA	NA	NA	140866644	140842623	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_140843176_140845837_140846090_140866538
ENSMUSG00000040842.18_140842624_140867077_1	chr4	-	932	4	FSM	ENSMUSG00000040842.18	ENSMUST00000102487.4	3244	4	0	2312	0	1254	multi-exon	FALSE	canonical	3	169	junction_2	126.792043213374	843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTCTTTTTTTTTTTTT	NA	False	NA	-19	True	NA	NA	NA	140867077	140842623	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_140843176_140845837_140846093_140847634_140847685_140867002
ENSMUSG00000040842.18_140842624_140867077_2	chr4	-	882	3	FSM	ENSMUSG00000040842.18	ENSMUST00000094549.11	3203	3	9	2312	0	1254	multi-exon	FALSE	canonical	3	212	junction_2	123	668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTCTTTTTTTTTTTTT	NA	False	NA	-19	True	NA	NA	NA	140867077	140842623	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_140843176_140845837_140846093_140867002
ENSMUSG00000040843.11_165043151_165064506_1	chr1	-	1078	7	FSM	ENSMUSG00000040843.11	ENSMUST00000043235.8	4380	7	6	3296	-5	0	multi-exon	FALSE	canonical	3	508	junction_2	54.8414381041684	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGTTTATCCTGTCTGT	NA	False	NA	-1	True	AATAAA	-28	NA	165064506	165043150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_165043450_165045351_165045415_165047667_165047764_165050097_165050230_165055073_165055174_165055836_165056017_165064298
ENSMUSG00000040843.11_165043295_165064506_1	chr1	-	934	7	FSM	ENSMUSG00000040843.11	ENSMUST00000043235.8	4380	7	6	3440	-5	0	multi-exon	FALSE	canonical	3	508	junction_2	54.8414381041684	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCTCTCCATGTGGAACC	NA	False	NA	NA	False	AATAAA	-14	NA	165064506	165043294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_165043450_165045351_165045415_165047667_165047764_165050097_165050230_165055073_165055174_165055836_165056017_165064298
ENSMUSG00000040848.12_165006260_165021911_1	chr1	-	1085	8	FSM	ENSMUSG00000040848.12	ENSMUST00000043338.10	5535	8	96	4354	-21	547	multi-exon	FALSE	canonical	3	60	junction_5	7.62380803664362	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGATTCTTTCTCTTGCC	NA	False	NA	NA	False	AATACA	-15	NA	165021911	165006259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_165006865_165009620_165009651_165011395_165011452_165011538_165011575_165012576_165012659_165015537_165015624_165015816_165015904_165021808
ENSMUSG00000040859.15_129355477_129382291_1	chr4	+	2720	11	FSM	ENSMUSG00000040859.15	ENSMUST00000048162.10	2823	11	103	0	0	0	multi-exon	FALSE	canonical	3	95	junction_3	13.6088206689632	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAAGTGTCCGGGGATGT	NA	False	NA	64	True	ATTAAA	-15	NA	129355476	129382291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129355499_129355734_129355796_129359022_129359140_129360615_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833
ENSMUSG00000040875.13_115045592_115061293_1	chr9	+	1144	5	ISM	ENSMUSG00000040875.13	ENSMUST00000046627.6	1872	10	149245	-2	95985	0	3prime_fragment	FALSE	canonical	3	73	junction_2	2.54950975679639	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGTTGGTATTTGTTGAA	6060	False	NA	8	True	ATTAAA	-18	NA	115045591	115061293	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
ENSMUSG00000040883.19_21832309_21838758_1	chr9	-	786	4	FSM	ENSMUSG00000040883.19	ENSMUST00000238930.2	862	4	73	3	0	0	multi-exon	FALSE	canonical	3	48	junction_3	87.3473271231327	1487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGATGGCCATGGTCATT	NA	False	NA	-10	True	AATAAA	-9	NA	21838758	21832308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21838582
ENSMUSG00000040883.19_21832309_21838831_1	chr9	-	786	4	NNC	ENSMUSG00000040883.19	novel	862	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	109.946451612693	374	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGATGGCCATGGTCATT	NA	False	NA	-10	True	AATAAA	-9	NA	21838831	21832308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_21832646_21837286_21837451_21837544_21837654_21838655
ENSMUSG00000040883.19_21832309_21838831_2	chr9	-	741	4	NNC	ENSMUSG00000040883.19	novel	862	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	109.946451612693	292	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGATGGCCATGGTCATT	NA	False	NA	-10	True	AATAAA	-9	NA	21838831	21832308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_21832646_21837286_21837451_21837544_21837654_21838700
ENSMUSG00000040888.11_24912164_24915072_2	chr17	-	1158	4	NNC	ENSMUSG00000040888.11	novel	1177	4	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	236.534704994144	599	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCTGGTTTCTGTGTGCT	NA	False	NA	-10	True	AATAAA	-14	NA	24915072	24912163	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_24912587_24913141_24913412_24914227_24914425_24914804
ENSMUSG00000040904.11_70126032_70128755_1	chr11	-	783	5	NIC	ENSMUSG00000020831.19	novel	779	5	NA	NA	-15	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_2	211.660695453832	2540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128755	70126031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_70126295_70126849_70127038_70127713_70127805_70128356_70128452_70128609
ENSMUSG00000040904.11_70126032_70128755_2	chr11	-	888	6	NIC	ENSMUSG00000020831.19	novel	880	6	NA	NA	-15	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_3	207.23127177142	2195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128755	70126031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_70126295_70126521_70126627_70126849_70127038_70127713_70127805_70128356_70128452_70128609
ENSMUSG00000040904.11_70126032_70128755_3	chr11	-	901	6	NNC	ENSMUSG00000020831.19	novel	880	6	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	194.664223728964	2711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128755	70126031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_70126291_70126515_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609
ENSMUSG00000040904.11_70126032_70130656_1	chr11	-	703	4	Fusion	ENSMUSG00000020831.19_ENSMUSG00000093989.2	novel	667	4	NA	NA	12	0	multi-exon	FALSE	canonical	1	2	junction_2	295.788212521504	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70130656	70126031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr11_-_70126295_70126849_70127038_70129763_70129841_70130481
ENSMUSG00000040907.16_24677592_24686624_1	chr7	-	1251	8	NNC	ENSMUSG00000040907.16	novel	3621	23	NA	NA	18696	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_7	17.1499985125245	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTGTGTGTGTTATGCTT	NA	False	NA	-1	True	AATATA	-18	NA	24686624	24677591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686533
ENSMUSG00000040936.16_120793520_120821126_1	chr9	-	401	3	NNC	ENSMUSG00000040936.16	novel	4103	37	NA	NA	-31553	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	6.5	29	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCATGTGTCAAACCCTCT	NA	False	NA	-1	True	AATAAA	-16	NA	120821126	120793519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_120793675_120795462_120795549_120820966
ENSMUSG00000040952.17_24584061_24589231_1	chr7	+	509	6	FSM	ENSMUSG00000040952.17	ENSMUST00000108430.10	774	6	265	0	0	0	multi-exon	FALSE	canonical	3	8873	junction_5	7497.54368843557	562615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584060	24589231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
ENSMUSG00000040952.17_24584238_24589231_1	chr7	+	534	6	FSM	ENSMUSG00000040952.17	ENSMUST00000108429.8	633	6	99	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	10447.7852504729	370072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584237	24589231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_24584295_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
ENSMUSG00000040963.16_69986916_69997013_1	chr11	+	1177	8	NNC	ENSMUSG00000040963.16	novel	672	5	NA	NA	-1602	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	15.9885162870488	67	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTGTAGCCTGGTTGTTT	5388	False	NA	NA	False	AAAAAG	-15	NA	69986915	69997013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_69987005_69987627_69987745_69988004_69988101_69988645_69988718_69988878_69988966_69989053_69989200_69996201_69996309_69996550
ENSMUSG00000040963.16_69988518_69997013_1	chr11	+	1003	5	FSM	ENSMUSG00000040963.16	ENSMUST00000179757.2	672	5	0	-331	0	0	multi-exon	FALSE	canonical	3	41	junction_2	4.49305018890286	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTGTAGCCTGGTTGTTT	6990	False	NA	NA	False	AAAAAG	-15	NA	69988517	69997013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69988718_69988878_69988966_69989053_69989200_69996201_69996309_69996550
ENSMUSG00000040972.9_139754157_139760166_1	chr4	-	600	5	NNC	ENSMUSG00000040972.9	novel	1979	10	NA	NA	213929	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	38.4016601203646	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGCCCTATATTTTTC	NA	False	NA	1	True	ATTAAA	-28	NA	139760166	139754156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_139754390_139755034_139755074_139755359_139755553_139756008_139756095_139760117
ENSMUSG00000040972.9_139754157_139762247_1	chr4	-	1137	5	ISM	ENSMUSG00000040972.9	ENSMUST00000039331.9	1979	10	211848	0	211848	0	3prime_fragment	FALSE	canonical	3	64	junction_3	15.3195136998535	69	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGCCCTATATTTTTC	NA	False	NA	1	True	ATTAAA	-28	NA	139762247	139754156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_139754390_139755034_139755074_139755359_139755553_139756008_139756095_139761661
ENSMUSG00000040972.9_139754157_139764804_1	chr4	-	1097	6	ISM	ENSMUSG00000040972.9	ENSMUST00000039331.9	1979	10	209291	0	209291	0	3prime_fragment	FALSE	canonical	3	64	junction_3	14.9184449591772	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGCCCTATATTTTTC	NA	False	NA	1	True	ATTAAA	-28	NA	139764804	139754156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_139754390_139755034_139755074_139755359_139755553_139756008_139756095_139761661_139762137_139764733
ENSMUSG00000041028.17_36843905_36856891_1	chr14	-	1422	9	NIC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	205	-1124	combination_of_known_junctions	FALSE	canonical	3	23	junction_8	1786.95934131138	1181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTTCATCTCTTATGC	NA	False	NA	-35	True	AATAAA	-21	NA	36856891	36843904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36856743
ENSMUSG00000041028.17_36843905_36857211_1	chr14	-	1319	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	0	-1124	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1810.12354550732	1730	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTTCATCTCTTATGC	NA	False	NA	-35	True	AATAAA	-21	NA	36857211	36843904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855213_36855589_36855761_36857151
ENSMUSG00000041028.17_36843905_36857211_2	chr14	-	1332	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	0	-1124	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1815.13332413214	3181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTTCATCTCTTATGC	NA	False	NA	-35	True	AATAAA	-21	NA	36857211	36843904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852722_36853483_36853607_36855127_36855228_36855589_36855761_36857151
ENSMUSG00000041028.17_36843905_36857252_1	chr14	-	1360	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-23	-1124	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1810.12354550732	9630	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTTCATCTCTTATGC	NA	False	NA	-35	True	AATAAA	-21	NA	36857252	36843904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855604_36855761_36857151
ENSMUSG00000041028.17_36843905_36857252_2	chr14	-	1370	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-23	-1124	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1810.12354550732	11607	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTTCATCTCTTATGC	NA	False	NA	-35	True	AATAAA	-21	NA	36857252	36843904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855594_36855761_36857151
ENSMUSG00000041028.17_36843905_36857252_3	chr14	-	1360	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-23	-1124	at_least_one_novel_splicesite	FALSE	canonical	3	107	junction_8	1759.69576560836	9213	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTTCATCTCTTATGC	NA	False	NA	-35	True	AATAAA	-21	NA	36857252	36843904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857166
ENSMUSG00000041028.17_36846676_36857273_1	chr14	-	1558	8	ISM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	-64	4627	-44	2868	5prime_fragment	FALSE	canonical	3	4955	junction_3	355.695581837581	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTAAGTTACTATGCTGTT	NA	False	NA	NA	False	NA	NA	NA	36857273	36846675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
ENSMUSG00000041028.17_36847701_36857252_1	chr14	-	1082	7	ISM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	-43	5652	-23	1843	5prime_fragment	FALSE	canonical	3	4955	junction_2	264.1296504034	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGCTGACTTGGAAATTG	NA	False	NA	NA	False	ATTAAA	-15	NA	36857252	36847700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
ENSMUSG00000041035.10_45549074_45566193_1	chr19	+	789	6	NNC	ENSMUSG00000041035.10	novel	687	7	NA	NA	0	211	at_least_one_novel_splicesite	FALSE	canonical	3	68	junction_3	159.454570332744	2740	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGACTGACTGCCCCTTT	3712	False	NA	13	True	AGTAAA	-20	NA	45549073	45566193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_45549147_45553349_45553431_45560323_45560438_45560843_45560978_45565431_45565535_45565909
ENSMUSG00000041035.10_45549074_45566193_2	chr19	+	800	6	FSM	ENSMUSG00000041035.10	ENSMUST00000047057.9	1353	6	20	533	0	211	multi-exon	FALSE	canonical	3	416	junction_3	22.5601418435257	2822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGACTGACTGCCCCTTT	3712	False	NA	13	True	AGTAAA	-20	NA	45549073	45566193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_45549147_45553349_45553431_45560323_45560449_45560843_45560978_45565431_45565535_45565909
ENSMUSG00000041046.8_6624720_6627475_1	chr11	+	1169	2	ISM	ENSMUSG00000041046.8	ENSMUST00000139540.2	1333	4	16155	-3	16155	0	3prime_fragment	FALSE	canonical	3	12	junction_1	0	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGTATTTCTCATTTTAT	NA	False	NA	14	True	ATTAAA	-14	NA	6624719	6627475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_6624896_6626482
ENSMUSG00000041057.11_71923210_71964784_1	chr17	+	2204	18	ISM	ENSMUSG00000041057.11	ENSMUST00000234560.2	2410	19	320	0	0	0	3prime_fragment	FALSE	canonical	2	2	junction_11	379.588823255486	1856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAATTCCCACACTTCCT	NA	False	NA	-89	True	AAAACA	-29	NA	71923209	71964784	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955771_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
ENSMUSG00000041057.11_71923210_71964973_1	chr17	+	2393	18	ISM	ENSMUSG00000041057.11	ENSMUST00000234560.2	2410	19	320	-189	0	0	3prime_fragment	FALSE	canonical	2	2	junction_11	379.588823255486	2336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGATTTAGGTGAATAC	NA	False	NA	100	True	AATATA	-28	NA	71923209	71964973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955771_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
ENSMUSG00000041062.8_25963941_25967309_1	chr17	+	1045	5	ISM	ENSMUSG00000041062.8	ENSMUST00000047098.7	2626	16	8925	-5	8925	5	3prime_fragment	FALSE	canonical	1	2	junction_1	2.73861278752583	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTGCTAGAGCCTTG	2188	False	NA	NA	False	AATAAA	-21	NA	25963940	25967309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_25964067_25965029_25965161_25965279_25965375_25965747_25965998_25966866
ENSMUSG00000041064.15_65500763_65503249_1	chr9	+	1501	3	ISM	ENSMUSG00000041064.15	ENSMUST00000131483.3	3309	13	6260	0	6255	0	3prime_fragment	FALSE	canonical	3	136	junction_1	12	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGCCTCCTGCCTGGTCT	NA	False	NA	27	True	AATAAA	-17	NA	65500762	65503249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_65500885_65501668_65501861_65502062
ENSMUSG00000041084.9_130489568_130502913_1	chr3	-	880	4	FSM	ENSMUSG00000041084.9	ENSMUST00000043937.9	1067	4	180	7	152	0	multi-exon	FALSE	canonical	3	1781	junction_1	135.7063823931	2901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTAGAGTGTGGACTTT	NA	False	NA	-6	True	AATAAA	-17	NA	130502913	130489567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_130490128_130496964_130497163_130499598_130499693_130502885
ENSMUSG00000041084.9_130489790_130503093_1	chr3	-	838	4	FSM	ENSMUSG00000041084.9	ENSMUST00000043937.9	1067	4	0	229	0	-222	multi-exon	FALSE	canonical	3	1781	junction_1	135.7063823931	4209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATCATCAGCTTTTGGAC	NA	False	NA	-3	True	AATAAA	-19	NA	130503093	130489789	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_130490128_130496964_130497163_130499598_130499693_130502885
ENSMUSG00000041096.14_151119848_151124797_1	chrX	-	2075	7	FSM	ENSMUSG00000041096.14	ENSMUST00000044509.7	2696	7	624	-3	0	0	multi-exon	FALSE	canonical	3	155	junction_2	16.4189930669738	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTGGAGTCTTTTGTCC	NA	False	NA	-1	True	AATAAA	-20	NA	151124797	151119847	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_151120562_151121720_151122389_151122628_151122724_151122857_151123004_151123081_151123194_151123298_151123377_151124535
ENSMUSG00000041115.17_150990238_150992453_1	chrX	+	803	3	Genic_Genomic	ENSMUSG00000041115.17	novel	5993	15	NA	NA	28278	5453	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTCTGGAGAGCTCCAGC	NA	False	NA	NA	False	NA	NA	NA	150990237	150992453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chrX_+_150990586_150991699_150991850_150992148
ENSMUSG00000041124.12_4376569_4386714_1	chr9	+	2637	3	FSM	ENSMUSG00000041124.12	ENSMUST00000212075.2	2800	3	7	156	0	-147	multi-exon	FALSE	canonical	3	88	junction_1	13	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGATTCTGTATTCTTTG	2	True	NA	7	True	AATACA	-21	NA	4376568	4386714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_4376624_4383536_4384143_4384738
ENSMUSG00000041126.17_6378138_6394394_1	chr11	-	675	5	FSM	ENSMUSG00000041126.17	ENSMUST00000109737.9	1633	5	49	909	-42	0	multi-exon	FALSE	canonical	3	3133	junction_4	74.0485482639599	13651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTGTCTCAGTATTTC	NA	False	NA	-3	True	GATAAA	-16	NA	6394394	6378137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6378433_6379095_6379226_6383723_6383838_6389375_6389454_6394336
ENSMUSG00000041133.12_150799424_150844966_1	chrX	+	3967	25	FSM	ENSMUSG00000041133.12	ENSMUST00000045312.6	4691	25	0	724	0	-724	multi-exon	TRUE	canonical	3	535	junction_3	101.202320735358	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	17	True	AATAAA	-21	NA	150799423	150844966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
ENSMUSG00000041133.12_150842665_150844966_1	chrX	+	537	4	ISM	ENSMUSG00000041133.12	ENSMUST00000045312.6	4691	25	43241	724	594	-724	3prime_fragment	FALSE	canonical	3	812	junction_2	34.7211110933328	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	17	True	AATAAA	-21	NA	150842664	150844966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_150842776_150843971_150844042_150844288_150844400_150844721
ENSMUSG00000041147.11_150446109_150453326_1	chr5	+	750	3	ISM	ENSMUSG00000041147.11	ENSMUST00000202975.4	2534	8	12	7115	0	21	5prime_fragment	FALSE	canonical	3	58	junction_1	9.5	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGTTCACCATAGATTTA	384	False	NA	NA	False	NA	NA	NA	150446108	150453326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_150446362_150446639_150446745_150452934
ENSMUSG00000041147.11_150446109_150460441_1	chr5	+	2006	10	ISM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	0	32771	0	0	5prime_fragment	FALSE	canonical	3	58	junction_1	8.45175122477183	54	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAAAAAAGAAAGT	384	False	NA	NA	False	NA	NA	NA	150446108	150460441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_150446362_150446639_150446745_150452934_150453163_150454533_150454643_150455148_150455199_150455519_150455561_150455755_150455868_150458057_150458108_150458903_150459016_150459495
ENSMUSG00000041193.16_138526555_138590624_1	chr4	-	1980	6	FSM	ENSMUSG00000041193.16	ENSMUST00000030524.14	2131	6	156	-5	136	0	multi-exon	FALSE	canonical	3	70	junction_2	8.52291030106501	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTTTTGGTGTATGCTA	NA	False	NA	0	True	AATAAA	-29	NA	138590624	138526554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_138527973_138528662_138528770_138531817_138531963_138533495_138533546_138546310_138546427_138590480
ENSMUSG00000041203.10_85753747_85756915_1	chr8	+	607	3	FSM	ENSMUSG00000041203.10	ENSMUST00000047281.10	902	3	295	0	295	0	multi-exon	FALSE	canonical	3	920	junction_1	163	1394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGCTTGGTTTATCTT	NA	False	NA	21	True	AGTAAA	-21	NA	85753746	85756915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85753864_85756167_85756246_85756503
ENSMUSG00000041220.11_129326035_129342982_1	chr3	+	394	4	NNC	ENSMUSG00000041220.11	novel	5951	5	NA	NA	0	-78986	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	40.0693842672377	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGGGACGAAGGAAGGAGG	NA	False	NA	NA	False	NA	NA	NA	129326034	129342982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_129326145_129326296_129326418_129342476_129342570_129342912
ENSMUSG00000041231.16_44346140_44361325_1	chr11	-	1346	11	FSM	ENSMUSG00000041231.16	ENSMUST00000102795.4	2088	11	0	742	0	236	multi-exon	FALSE	canonical	2	61	junction_9	50.7897627480184	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAGAAAAATATATCTACGA	NA	False	NA	NA	False	AAAAAG	-19	NA	44361325	44346139	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_44346443_44347190_44347319_44349031_44349149_44351547_44351647_44352145_44352184_44354484_44354584_44356191_44356308_44356384_44356471_44356822_44356915_44357641_44357839_44361254
ENSMUSG00000041236.9_18901456_19050981_1	chr13	+	3181	30	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	3	298	junction_29	71.5253046363968	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTATTGTGTTGCAAGC	NA	False	NA	23	True	AATAAA	-22	NA	18901455	19050981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289_19050795_19050816
ENSMUSG00000041241.13_138162034_138167214_1	chr4	+	1319	4	FSM	ENSMUSG00000041241.13	ENSMUST00000044058.11	3733	4	52	2362	0	892	multi-exon	FALSE	canonical	3	201	junction_3	1.24721912892465	1109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAAGGCCAGTCCTCTCCG	NA	False	NA	14	True	NA	NA	NA	138162033	138167214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_138162191_138164938_138165027_138165552_138165674_138166261
ENSMUSG00000041241.13_138162034_138167214_2	chr4	+	1539	5	FSM	ENSMUSG00000041241.13	ENSMUST00000105813.8	3944	5	46	2359	0	892	multi-exon	FALSE	non_canonical	0	0	junction_4	84.9852928452918	1025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAAGGCCAGTCCTCTCCG	NA	False	NA	14	True	NA	NA	NA	138162033	138167214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_138162191_138163490_138163711_138164938_138165027_138165552_138165673_138166260
ENSMUSG00000041241.13_138162034_138167214_3	chr4	+	1231	3	NIC	ENSMUSG00000041241.13	novel	3733	4	NA	NA	0	892	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	95	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAAGGCCAGTCCTCTCCG	NA	False	NA	14	True	NA	NA	NA	138162033	138167214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_138162191_138165552_138165674_138166261
ENSMUSG00000041278.11_43620836_43638825_3	chr11	-	1453	8	NNC	ENSMUSG00000041278.11	novel	1965	8	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	329.479614432412	1949	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGGGGACTATGTTGT	NA	False	NA	-10	True	AATAAA	-12	NA	43638825	43620835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_43621435_43627241_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632644_43635911_43636275_43638748
ENSMUSG00000041278.11_43620836_43638825_4	chr11	-	1450	8	NNC	ENSMUSG00000041278.11	novel	1965	8	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	320.659524437128	1010	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGGGGACTATGTTGT	NA	False	NA	-10	True	AATAAA	-12	NA	43638825	43620835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_43621435_43627241_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911_43636267_43638748
ENSMUSG00000041278.11_43620836_43638825_6	chr11	-	1449	8	NNC	ENSMUSG00000041278.11	novel	1438	8	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	263.938845730814	1952	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGGGGACTATGTTGT	NA	False	NA	-10	True	AATAAA	-12	NA	43638825	43620835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_43621435_43627245_43627301_43628698_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911_43636275_43638748
ENSMUSG00000041278.11_43620836_43638825_7	chr11	-	1450	8	NNC	ENSMUSG00000041278.11	novel	1965	8	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	329.479614432412	662	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGGGGACTATGTTGT	NA	False	NA	-10	True	AATAAA	-12	NA	43638825	43620835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_43621435_43627241_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632641_43635911_43636275_43638748
ENSMUSG00000041278.11_43620836_43638825_8	chr11	-	1431	7	NNC	ENSMUSG00000041278.11	novel	1965	8	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	331.450725347424	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGGGGACTATGTTGT	NA	False	NA	-10	True	AATAAA	-12	NA	43638825	43620835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_43621435_43627241_43627301_43628693_43628843_43630533_43630657_43632587_43632649_43635911_43636275_43638748
ENSMUSG00000041278.11_43620836_43638825_9	chr11	-	1446	8	NNC	ENSMUSG00000041278.11	novel	1965	8	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	255.299184231732	2384	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGGGGACTATGTTGT	NA	False	NA	-10	True	AATAAA	-12	NA	43638825	43620835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_43621423_43627241_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911_43636275_43638748
ENSMUSG00000041287.6_69545830_69547553_1	chr11	+	1171	2	FSM	ENSMUSG00000041287.6	ENSMUST00000047373.6	861	2	-310	0	-310	0	multi-exon	FALSE	canonical	3	116	junction_1	0	506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTGTCCCATTTGTAT	NA	False	NA	24	True	ATTAAA	-17	NA	69545829	69547553	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69546726_69547278
ENSMUSG00000041287.6_69547523_69553413_1	chr11	+	1261	7	NNC	ENSMUSG00000041287.6	novel	861	2	NA	NA	1383	5860	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1521	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGCCAGGCGGGACAACCC	NA	False	NA	NA	False	NA	NA	NA	69547522	69553413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_69548155_69548245_69548357_69548550_69548670_69548761_69548848_69549391_69549520_69549636_69549703_69553294
ENSMUSG00000041287.6_69547523_69553413_2	chr11	+	1266	7	NIC	ENSMUSG00000041287.6	novel	861	2	NA	NA	1383	5860	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGCCAGGCGGGACAACCC	NA	False	NA	NA	False	NA	NA	NA	69547522	69553413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_69548155_69548245_69548357_69548550_69548670_69548761_69548848_69549391_69549525_69549636_69549703_69553294
ENSMUSG00000041287.6_69547523_69553413_3	chr11	+	1257	7	NNC	ENSMUSG00000041287.6	novel	861	2	NA	NA	1383	5860	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1559	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGCCAGGCGGGACAACCC	NA	False	NA	NA	False	NA	NA	NA	69547522	69553413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_69548155_69548245_69548357_69548559_69548670_69548761_69548848_69549391_69549525_69549636_69549703_69553294
ENSMUSG00000041287.6_69547523_69553413_4	chr11	+	1257	7	NNC	ENSMUSG00000041287.6	novel	861	2	NA	NA	1383	5860	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2708	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGCCAGGCGGGACAACCC	NA	False	NA	NA	False	NA	NA	NA	69547522	69553413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_69548155_69548245_69548348_69548550_69548670_69548761_69548848_69549391_69549525_69549636_69549703_69553294
ENSMUSG00000041303.8_54473221_54478141_1	chr1	-	459	3	ISM	ENSMUSG00000041303.8	ENSMUST00000041638.8	4582	18	-11	38058	-11	-6758	5prime_fragment	FALSE	canonical	3	158	junction_2	4.5	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATGAAAGTAAGCTGTTAA	6689	False	NA	NA	False	AAGAAA	-2	NA	54478141	54473220	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_54473398_54476990_54477103_54477971
ENSMUSG00000041323.7_105727662_105735105_1	chr12	+	778	4	ISM	ENSMUSG00000041323.7	ENSMUST00000040876.7	3099	18	55427	13601	16128	-13601	internal_fragment	FALSE	canonical	3	37	junction_2	6.54896090146283	135	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACTGAGTACCACTGTC	NA	False	NA	NA	False	ATTAAA	-18	NA	105727661	105735105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_105727856_105730211_105730281_105732812_105733011_105734788
ENSMUSG00000041323.7_105727662_105748706_1	chr12	+	1549	5	NIC	ENSMUSG00000041323.7	novel	3099	18	NA	NA	16128	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_1	14.2653426176871	252	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGTTTCTTTTATTGG	NA	False	NA	NA	False	AATAAA	-40	NA	105727661	105748706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_105727856_105732812_105733011_105734788_105735010_105747108_105747268_105747929
ENSMUSG00000041329.14_69490562_69496786_1	chr11	-	2973	7	FSM	ENSMUSG00000041329.14	ENSMUST00000047889.13	2842	7	-131	0	-18	0	multi-exon	FALSE	canonical	3	185	junction_6	5.18544972870135	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACAGAGCCCTGTGTGTG	NA	False	NA	-7	True	AATAAA	-33	NA	69496786	69490561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69492239_69492350_69492450_69493250_69493308_69493525_69493732_69493832_69493938_69494250_69494380_69496086
ENSMUSG00000041343.20_92210703_92231502_1	chr7	-	1244	9	NNC	ENSMUSG00000041343.20	novel	2788	13	NA	NA	27770	20228	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1617	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTTGATTTTCGCTGAGGC	NA	False	NA	NA	False	NA	NA	NA	92231502	92210702	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_92210844_92216829_92216950_92217679_92217784_92221746_92221849_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231008
ENSMUSG00000041346.12_69452585_69454510_1	chr11	-	1077	5	ISM	ENSMUSG00000041346.12	ENSMUST00000155894.2	985	7	238	1	238	0	intron_retention	FALSE	canonical	3	9	junction_4	73.4315157136226	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTCATTGTGTCTGTT	NA	False	NA	-4	True	TATAAA	-15	NA	69454510	69452584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454145
ENSMUSG00000041346.12_69452585_69454510_2	chr11	-	1093	5	ISM	ENSMUSG00000041346.12	ENSMUST00000048139.12	1891	10	15640	0	238	0	intron_retention	FALSE	canonical	3	153	junction_4	13.7908484148003	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTCATTGTGTCTGTT	NA	False	NA	-4	True	TATAAA	-15	NA	69454510	69452584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129
ENSMUSG00000041351.17_137447227_137457172_1	chr4	+	1965	10	NIC	ENSMUSG00000041351.17	novel	3168	23	NA	NA	1044	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_7	31.0304509939654	144	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGGAGTTAAGAACAGCTT	NA	False	NA	11	True	AATAAA	-21	NA	137447226	137457172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455539_137455675_137455838_137455880_137456185
ENSMUSG00000041351.17_137447227_137457172_2	chr4	+	1934	10	ISM	ENSMUSG00000041351.17	ENSMUST00000097837.11	3168	23	12394	0	1044	0	3prime_fragment	TRUE	canonical	3	83	junction_7	18.9326290948839	153	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGGAGTTAAGAACAGCTT	NA	False	NA	11	True	AATAAA	-21	NA	137447226	137457172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_137447308_137447604_137447743_137449136_137449269_137452002_137452113_137452860_137452975_137454262_137454387_137454987_137455091_137455570_137455675_137455838_137455880_137456185
ENSMUSG00000041353.13_149191574_149242147_2	chrX	-	1201	3	NNC	ENSMUSG00000041353.13	novel	1316	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	131	861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGACTTGAGAGGTATT	NA	False	NA	NA	False	GATAAA	-21	NA	149242147	149191573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_149192597_149203337_149203432_149242063
ENSMUSG00000041353.13_149192309_149218518_1	chrX	-	541	3	FSM	ENSMUSG00000041353.13	ENSMUST00000143526.8	748	3	0	207	0	-142	multi-exon	FALSE	canonical	1	3	junction_2	129.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTCTTGGCTTTTGTTTG	NA	False	NA	NA	False	TATAAA	-22	NA	149218518	149192308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_149192597_149203337_149203438_149218365
ENSMUSG00000041353.13_149192309_149242147_1	chrX	-	572	3	NNC	ENSMUSG00000041353.13	novel	1316	3	NA	NA	-1	-142	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	131	444	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTCTTGGCTTTTGTTTG	NA	False	NA	NA	False	TATAAA	-22	NA	149242147	149192308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_149192597_149203337_149203432_149241957
ENSMUSG00000041353.13_149192309_149242147_2	chrX	-	466	3	NNC	ENSMUSG00000041353.13	novel	1316	3	NA	NA	-1	-142	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	131	623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTCTTGGCTTTTGTTTG	NA	False	NA	NA	False	TATAAA	-22	NA	149242147	149192308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_149192597_149203337_149203432_149242063
ENSMUSG00000041355.14_88483246_88495726_1	chr3	+	1228	8	NIC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	2280.3080618949	8808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	NA	False	NA	15	True	AATAAA	-17	NA	88483245	88495726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_88483288_88483806_88483911_88484401_88484504_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ENSMUSG00000041355.14_88486948_88495326_1	chr3	+	626	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	33	400	0	0	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACCAGGTTTTTTCTAG	3590	False	NA	NA	False	NA	NA	NA	88486947	88495326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ENSMUSG00000041355.14_88486948_88495726_1	chr3	+	1017	6	NNC	ENSMUSG00000041355.14	novel	1059	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2264.50077500539	27119	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	3590	False	NA	15	True	AATAAA	-17	NA	88486947	88495726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_88486994_88487186_88487342_88488280_88488380_88491089_88491190_88494171_88494250_88495187
ENSMUSG00000041355.14_88486948_88495726_2	chr3	+	1021	6	NNC	ENSMUSG00000041355.14	novel	1059	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1894.05645111227	29402	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	3590	False	NA	15	True	AATAAA	-17	NA	88486947	88495726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_88486994_88487191_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ENSMUSG00000041355.14_88486948_88495726_3	chr3	+	1012	6	NNC	ENSMUSG00000041355.14	novel	1059	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1849.71528619947	13257	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	3590	False	NA	15	True	AATAAA	-17	NA	88486947	88495726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494185_88494250_88495187
ENSMUSG00000041355.14_88486948_88495726_4	chr3	+	1015	6	NNC	ENSMUSG00000041355.14	novel	1059	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1811.64736082936	19396	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	3590	False	NA	15	True	AATAAA	-17	NA	88486947	88495726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_88486994_88487186_88487331_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ENSMUSG00000041355.14_88487186_88495726_1	chr3	+	975	5	NNC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	208	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_2	2089.32529480213	2106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	3828	False	NA	15	True	AATAAA	-17	NA	88487185	88495726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_88487342_88488280_88488380_88491089_88491193_88494171_88494250_88495187
ENSMUSG00000041359.15_105183009_105188884_1	chr12	-	1148	5	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	843.075730584151	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCTCTTGGAATTATG	NA	False	NA	-2	True	AATAAA	-23	NA	105188884	105183008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_105183179_105183202_105183321_105183364_105183961_105184917_105185089_105188791
ENSMUSG00000041359.15_105183009_105188884_2	chr12	-	1242	5	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	850.691777320082	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCTCTTGGAATTATG	NA	False	NA	-2	True	AATAAA	-23	NA	105188884	105183008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_105183321_105183364_105183961_105184481_105184552_105184917_105185089_105188791
ENSMUSG00000041359.15_105183009_105188884_3	chr12	-	1218	6	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	829.202846111855	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCTCTTGGAATTATG	NA	False	NA	-2	True	AATAAA	-23	NA	105188884	105183008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_105183179_105183202_105183321_105183364_105183961_105184481_105184552_105184917_105185089_105188791
ENSMUSG00000041359.15_105183009_105188884_4	chr12	-	1286	4	FSM	ENSMUSG00000041359.15	ENSMUST00000041316.15	1398	4	112	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	814.330945555238	1378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCTCTTGGAATTATG	NA	False	NA	-2	True	AATAAA	-23	NA	105188884	105183008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_105183961_105184481_105184552_105184917_105185089_105188791
ENSMUSG00000041359.15_105183009_105188999_1	chr12	-	1230	3	FSM	ENSMUSG00000041359.15	ENSMUST00000175652.2	535	3	53	-748	-3	0	multi-exon	FALSE	canonical	3	551	junction_2	399	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCTCTTGGAATTATG	NA	False	NA	-2	True	AATAAA	-23	NA	105188999	105183008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_105183961_105184481_105184552_105188791
ENSMUSG00000041359.15_105183009_105188999_2	chr12	-	1333	6	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	829.202846111855	4283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCTCTTGGAATTATG	NA	False	NA	-2	True	AATAAA	-23	NA	105188999	105183008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_105183179_105183202_105183321_105183364_105183961_105184481_105184552_105184917_105185089_105188791
ENSMUSG00000041359.15_105183009_105188999_3	chr12	-	1263	5	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	843.075730584151	1981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCTCTTGGAATTATG	NA	False	NA	-2	True	AATAAA	-23	NA	105188999	105183008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_105183179_105183202_105183321_105183364_105183961_105184917_105185089_105188791
ENSMUSG00000041359.15_105183009_105188999_4	chr12	-	1357	5	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	850.691777320082	5043	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCTCTTGGAATTATG	NA	False	NA	-2	True	AATAAA	-23	NA	105188999	105183008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_105183321_105183364_105183961_105184481_105184552_105184917_105185089_105188791
ENSMUSG00000041359.15_105183853_105188999_1	chr12	-	557	4	FSM	ENSMUSG00000041359.15	ENSMUST00000041316.15	1398	4	-3	844	-3	0	multi-exon	FALSE	canonical	0	0	junction_2	814.330945555238	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAGAAGAAAACTCTGGCC	NA	False	NA	NA	False	NA	NA	NA	105188999	105183852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_105183961_105184481_105184552_105184917_105185089_105188791
ENSMUSG00000041360.9_27367461_27407220_1	chr19	-	2100	18	NNC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	364.913612566972	1232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGACCTTTGGTTTAA	NA	False	NA	-17	True	TATAAA	-10	NA	27407220	27367460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398865_27399750_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
ENSMUSG00000041360.9_27367461_27407220_2	chr19	-	2098	18	NNC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	363.11010464718	1467	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGACCTTTGGTTTAA	NA	False	NA	-17	True	TATAAA	-10	NA	27407220	27367460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407196
ENSMUSG00000041360.9_27367461_27407264_1	chr19	-	2142	18	NNC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	1	13	junction_14	361.863171678607	1871	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGACCTTTGGTTTAA	NA	False	NA	-17	True	TATAAA	-10	NA	27407264	27367460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400977_27401608_27401745_27403195_27403415_27404436_27404529_27407191
ENSMUSG00000041360.9_27367461_27407264_2	chr19	-	2145	18	NNC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	365.07735351353	1671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGACCTTTGGTTTAA	NA	False	NA	-17	True	TATAAA	-10	NA	27407264	27367460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389657_27393281_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
ENSMUSG00000041360.9_27395818_27407264_1	chr19	-	1492	10	ISM	ENSMUSG00000041360.9	ENSMUST00000076219.6	3471	18	-39	29720	-39	0	5prime_fragment	FALSE	canonical	3	1256	junction_9	97.4371592360943	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAGAAGAAG	NA	False	NA	NA	False	TTTAAA	-3	NA	27407264	27395817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
ENSMUSG00000041375.19_16009402_16020705_1	chr7	-	1934	12	ISM	ENSMUSG00000041375.20	ENSMUST00000118976.10	2175	14	10	1432	0	0	5prime_fragment	FALSE	canonical	3	130	junction_1	29.1238449918179	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGACACCCACCCCACT	NA	False	NA	-14	True	AATAAA	-14	NA	16020705	16009401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
ENSMUSG00000041406.15_163781575_163792098_1	chr1	-	1033	8	ISM	ENSMUSG00000041406.15	ENSMUST00000045876.8	3179	24	30267	252	-2506	-252	3prime_fragment	TRUE	canonical	3	213	junction_6	36.6672850906413	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATCTTTATTTGACATAAA	NA	False	NA	NA	False	CATAAA	-23	NA	163792098	163781574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_163781909_163782905_163783026_163784396_163784478_163785061_163785167_163786856_163786971_163788145_163788242_163789532_163789656_163792038
ENSMUSG00000041426.13_52884205_52960019_1	chr1	+	1704	14	FSM	ENSMUSG00000041426.13	ENSMUST00000044478.7	1830	14	0	126	0	-121	multi-exon	FALSE	canonical	3	80	junction_5	8.39836557781919	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGGGTGTGTTGATGCCT	NA	False	NA	5	True	AATAAA	-15	NA	52884204	52960019	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_52884304_52892826_52892870_52899186_52899325_52901426_52901512_52904707_52904789_52908064_52908118_52924261_52924341_52940346_52940493_52942005_52942093_52943800_52943860_52944529_52944612_52952889_52953010_52955795_52955830_52959421
ENSMUSG00000041429.4_24851656_24857812_1	chr17	+	909	5	NIC	ENSMUSG00000041429.4	novel	1079	6	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	14	junction_2	98.3142283700584	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGGCCCGTTGGCTTC	908	False	NA	12	True	AATAAA	-24	NA	24851655	24857812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_24851829_24852900_24853140_24854561_24854722_24857397_24857504_24857581
ENSMUSG00000041429.4_24851656_24857812_2	chr17	+	1075	6	NNC	ENSMUSG00000041429.4	novel	1079	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	95.4337466518003	2564	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGGCCCGTTGGCTTC	908	False	NA	12	True	AATAAA	-24	NA	24851655	24857812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_24851829_24852900_24853140_24853703_24853870_24854561_24854722_24857397_24857504_24857581
ENSMUSG00000041431.17_100915700_100923007_1	chr13	-	1876	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	71	542	-13	417	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	6044	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCCCCCAAGTCTCACTA	NA	False	NA	2	True	ATTAAA	-19	NA	100923007	100915699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
ENSMUSG00000041431.17_100916117_100923007_1	chr13	-	1459	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	71	959	-13	0	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	4905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTACTTGCTCTTCAATA	NA	False	NA	-50	True	NA	NA	NA	100923007	100916116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
ENSMUSG00000041438.9_107620283_107625112_1	chr8	+	454	4	ISM	ENSMUSG00000041438.9	ENSMUST00000047629.7	2232	17	0	24608	0	3854	5prime_fragment	FALSE	canonical	3	1046	junction_1	81.1418511004032	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCCAGAAAAAATCCAGTT	NA	False	NA	NA	False	NA	NA	NA	107620282	107625112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073
ENSMUSG00000041438.9_107621221_107649720_1	chr8	+	2172	16	ISM	ENSMUSG00000041438.9	ENSMUST00000047629.7	2232	17	938	0	0	0	3prime_fragment	FALSE	canonical	3	1116	junction_3	91.8083995189014	2301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTAGACATTTTAAATTA	NA	False	NA	12	True	AATAAA	-17	NA	107621220	107649720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
ENSMUSG00000041445.10_34121164_34125715_1	chr14	+	1263	2	ISM	ENSMUSG00000041445.10	ENSMUST00000111908.3	3974	7	23742	529	23486	-529	3prime_fragment	FALSE	canonical	3	70	junction_1	0	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	34121163	34125715	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_34121581_34124869
ENSMUSG00000041449.17_104214164_104219928_1	chr12	+	1306	5	NIC	ENSMUSG00000041449.17	novel	1226	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	10.7325439668328	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCAGAACTTCTCAAATGG	NA	False	NA	NA	False	NA	NA	NA	104214163	104219928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_104214232_104216398_104217017_104217730_104218005_104218943_104219095_104219733
ENSMUSG00000041449.17_104214164_104220666_1	chr12	+	2044	5	NIC	ENSMUSG00000041449.17	novel	1239	4	NA	NA	0	738	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	10.7325439668328	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGAGTGTTCACAGAGC	NA	False	NA	12	True	AATAAA	-18	NA	104214163	104220666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_104214232_104216398_104217017_104217730_104218005_104218943_104219095_104219733
ENSMUSG00000041453.13_146769700_146772796_1	chr5	+	796	6	NNC	ENSMUSG00000041453.13	novel	1856	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	5229.91248110329	52449	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	False	NA	2	True	AATAAA	-16	NA	146769699	146772796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_146769982_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772687
ENSMUSG00000041453.13_146769956_146772796_1	chr5	+	1566	5	NIC	ENSMUSG00000041453.13	novel	1067	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	8667	junction_4	2022.40209899021	23579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	False	NA	2	True	AATAAA	-16	NA	146769955	146772796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUSG00000041453.13_146769956_146772796_2	chr5	+	865	6	NNC	ENSMUSG00000041453.13	novel	1067	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_1	5121.11015308204	51659	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	False	NA	2	True	AATAAA	-16	NA	146769955	146772796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_146770293_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUSG00000041453.13_146769956_146772796_3	chr5	+	647	7	NNC	ENSMUSG00000041453.13	novel	1067	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	5852.7472585293	51639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	False	NA	2	True	AATAAA	-16	NA	146769955	146772796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_146769982_146770457_146770551_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUSG00000041453.13_146769956_146773842_1	chr5	+	1600	6	FSM	ENSMUSG00000041453.13	ENSMUST00000035983.12	1856	6	256	0	0	0	multi-exon	FALSE	canonical	3	6955	junction_1	2705.44403749181	114397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTTGTTAGTGATGGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	146769955	146773842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_146769982_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUSG00000041453.13_146772454_146772796_1	chr5	+	180	2	NNC	ENSMUSG00000041453.13	novel	632	2	NA	NA	438	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	514	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	False	NA	2	True	AATAAA	-16	NA	146772453	146772796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_146772525_146772687
ENSMUSG00000041459.16_148701183_148711222_1	chr4	-	2158	7	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	409	junction_1	257.510949066033	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711222	148701182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_148701302_148702022_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701183_148711222_2	chr4	-	1319	8	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	409.746860629729	1815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711222	148701182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_148701302_148702022_148702283_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701183_148711222_3	chr4	-	1129	8	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_2	406.055741624377	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711222	148701182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_148701302_148702022_148702093_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701183_148711222_4	chr4	-	1217	8	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_2	402.382192164898	3456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711222	148701182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_148701302_148702022_148702163_148703103_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701183_148711222_5	chr4	-	1190	8	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	168	junction_2	371.00008251278	3503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711222	148701182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_148701302_148702022_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701320_148711222_1	chr4	-	1182	8	NIC	ENSMUSG00000041459.16	novel	6425	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_2	478.472228524695	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTGTTTTGCAGCC	NA	False	NA	NA	False	AATAAA	-17	NA	148711222	148701319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_148701501_148702022_148702093_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701320_148711222_2	chr4	-	1261	8	NIC	ENSMUSG00000041459.16	novel	6495	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	442.355199414429	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTGTTTTGCAGCC	NA	False	NA	NA	False	AATAAA	-17	NA	148711222	148701319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_148701501_148702022_148702163_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701320_148711222_3	chr4	-	1783	7	FSM	ENSMUSG00000041459.16	ENSMUST00000165113.8	6495	7	231	4481	0	0	multi-exon	FALSE	canonical	3	205	junction_1	333.080404040159	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTGTTTTGCAGCC	NA	False	NA	NA	False	AATAAA	-17	NA	148711222	148701319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_148702163_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701320_148711222_4	chr4	-	1774	7	FSM	ENSMUSG00000041459.16	ENSMUST00000105699.8	1904	7	-7	137	0	0	multi-exon	FALSE	canonical	3	168	junction_1	346.808024064547	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTGTTTTGCAGCC	NA	False	NA	NA	False	AATAAA	-17	NA	148711222	148701319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041459.16_148701320_148711222_5	chr4	-	1894	7	ISM	ENSMUSG00000041459.16	ENSMUST00000191450.7	1304	8	-7	138	0	0	5prime_fragment	FALSE	canonical	3	29	junction_1	398.417285434924	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTGTTTTGCAGCC	NA	False	NA	NA	False	AATAAA	-17	NA	148711222	148701319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_148702283_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUSG00000041477.15_119152249_119183450_1	chr6	+	541	6	ISM	ENSMUSG00000041477.15	ENSMUST00000073909.6	1748	9	0	13696	0	-8358	5prime_fragment	FALSE	canonical	3	42	junction_4	5.12249938994628	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAGATGACCAATTCCT	NA	False	NA	NA	False	AATGAA	-44	NA	119152248	119183450	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_119152404_119157025_119157067_119160610_119160739_119175888_119175956_119177782_119177913_119183430
ENSMUSG00000041477.15_119152249_119197167_1	chr6	+	1868	9	FSM	ENSMUSG00000041477.15	ENSMUST00000112777.9	3313	9	35	1410	0	0	multi-exon	FALSE	canonical	3	31	junction_6	11.8684192291981	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGTCTGGGGGTTTTGTT	NA	False	NA	9	True	AGTAAA	-16	NA	119152248	119197167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_119152404_119157025_119157067_119160610_119160739_119175888_119175956_119177782_119177913_119183430_119183560_119191730_119192568_119194763_119194941_119196963
ENSMUSG00000041491.9_15933138_15951831_1	chr19	-	1467	8	ISM	ENSMUSG00000041491.9	ENSMUST00000236749.2	2465	14	10226	-207	10226	0	3prime_fragment	FALSE	canonical	3	141	junction_1	13.402710660953	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATATTGAGTGATAAAAT	7371	False	NA	NA	False	AATAAA	-16	NA	15951831	15933137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_15933768_15936895_15937065_15938306_15938474_15939735_15939814_15946435_15946565_15947896_15947943_15948259_15948396_15951719
ENSMUSG00000041506.16_106354517_106362615_1	chr9	+	1523	15	NNC	ENSMUSG00000041506.16	novel	1586	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_5	354.878802249041	5775	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGTTCTCCCTTGTTCC	NA	False	NA	15	True	ATTAAA	-15	NA	106354516	106362615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358964_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
ENSMUSG00000041506.16_106354517_106362615_2	chr9	+	1524	15	NNC	ENSMUSG00000041506.16	novel	1586	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	353.748216985483	5674	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGTTCTCCCTTGTTCC	NA	False	NA	15	True	ATTAAA	-15	NA	106354516	106362615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_106354634_106354869_106354953_106357894_106358005_106358359_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
ENSMUSG00000041528.16_107926488_107928901_1	chr9	-	1406	10	NIC	ENSMUSG00000041528.16	novel	445	2	NA	NA	528	2245	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGGAGGCGGCGCAGCCA	NA	False	NA	NA	False	NA	NA	NA	107928901	107926487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_107926561_107926710_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
ENSMUSG00000041548.5_116546550_116560554_1	chr5	-	1447	3	FSM	ENSMUSG00000041548.5	ENSMUST00000036991.5	1816	3	369	0	369	0	multi-exon	FALSE	canonical	3	315	junction_2	24.5	911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGCTTCATTTAGCGA	NA	False	NA	0	True	AATAAA	-20	NA	116560554	116546549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_116547550_116553465_116553530_116560171
ENSMUSG00000041560.13_15671763_15679988_1	chr7	-	1510	13	FSM	ENSMUSG00000041560.13	ENSMUST00000044158.13	3176	13	11	1655	-8	0	multi-exon	FALSE	canonical	3	1334	junction_1	195.89089579548	12388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGCTGGGGTCTTGTTAT	NA	False	NA	-9	True	AATAAA	-12	NA	15679988	15671762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_15671815_15672098_15672156_15672276_15672354_15672835_15672903_15673013_15673190_15673378_15673580_15673653_15673759_15674062_15674159_15675664_15675736_15676099_15676300_15676713_15676823_15679214_15679280_15679754
ENSMUSG00000041560.13_15671763_15679988_2	chr7	-	1503	13	NNC	ENSMUSG00000041560.13	novel	3176	13	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	554.865123751309	12151	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGCTGGGGTCTTGTTAT	NA	False	NA	-9	True	AATAAA	-12	NA	15679988	15671762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_15671815_15672098_15672156_15672276_15672354_15672835_15672903_15673013_15673190_15673378_15673580_15673653_15673759_15674062_15674159_15675664_15675736_15676099_15676300_15676713_15676816_15679214_15679280_15679754
ENSMUSG00000041571.11_15651133_15656327_1	chr7	-	721	5	NNC	ENSMUSG00000041571.11	novel	736	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	883.163206887606	8631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGATGTTTATTTTGGCT	NA	False	NA	-11	True	AATAAA	-21	NA	15656327	15651132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_15651465_15653772_15653872_15653967_15654043_15654229_15654284_15656166
ENSMUSG00000041571.11_15651133_15656327_2	chr7	-	731	6	NNC	ENSMUSG00000041571.11	novel	736	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	813.951005896547	9214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGATGTTTATTTTGGCT	NA	False	NA	-11	True	AATAAA	-21	NA	15656327	15651132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_15651465_15653772_15653872_15653967_15654034_15654225_15654284_15654373_15654399_15656176
ENSMUSG00000041623.18_113575266_113578624_1	chr11	+	857	2	FSM	ENSMUSG00000041623.18	ENSMUST00000153732.2	541	2	-646	330	0	-330	multi-exon	TRUE	canonical	3	43	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGATGGAAGTGTGTCCTTA	NA	False	NA	NA	False	NA	NA	NA	113575265	113578624	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_113576098_113578599
ENSMUSG00000041623.18_113575266_113585473_1	chr11	+	2629	5	NIC	ENSMUSG00000041623.18	novel	2196	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	43	junction_1	113.778293184597	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575265	113585473	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_113576098_113578599_113580048_113582554_113582660_113583220_113583329_113585337
ENSMUSG00000041623.18_113575266_113585473_2	chr11	+	1964	4	NIC	ENSMUSG00000041623.18	novel	2062	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_2	111.645271582216	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575265	113585473	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_113575538_113578599_113580048_113583220_113583329_113585337
ENSMUSG00000041629.8_113547333_113553227_1	chr11	-	1072	8	NIC	ENSMUSG00000041629.8	novel	2619	3	NA	NA	21754	4812	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCAGGTTTCTCAGAACC	NA	False	NA	NA	False	NA	NA	NA	113553227	113547332	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_113547475_113547828_113547976_113548200_113548363_113549304_113549433_113550094_113550204_113551768_113551879_113551965_113552045_113553032
ENSMUSG00000041629.8_113553733_113574761_1	chr11	-	805	3	NNC	ENSMUSG00000041629.8	novel	2619	3	NA	NA	220	-1588	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	699	1522	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAGTTTCCATGGGGAAAA	NA	False	NA	-16	True	AATAAA	-14	NA	113574761	113553732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_113554370_113568129_113568224_113574687
ENSMUSG00000041629.8_113553733_113574761_2	chr11	-	811	3	FSM	ENSMUSG00000041629.8	ENSMUST00000120194.2	2619	3	220	1588	220	-1588	multi-exon	FALSE	canonical	3	1327	junction_2	35.5	1680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAGTTTCCATGGGGAAAA	NA	False	NA	-16	True	AATAAA	-14	NA	113574761	113553732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_113554370_113568129_113568230_113574687
ENSMUSG00000041629.8_113554027_113574761_1	chr11	-	517	3	FSM	ENSMUSG00000041629.8	ENSMUST00000120194.2	2619	3	220	1882	220	-1882	multi-exon	FALSE	canonical	3	1327	junction_2	35.5	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTCGGCTTTCCGTCT	NA	False	NA	-22	True	TTTAAA	-27	NA	113574761	113554026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_113554370_113568129_113568230_113574687
ENSMUSG00000041629.8_113554027_113574761_2	chr11	-	511	3	NNC	ENSMUSG00000041629.8	novel	2619	3	NA	NA	220	-1882	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	699	457	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTCGGCTTTCCGTCT	NA	False	NA	-22	True	TTTAAA	-27	NA	113574761	113554026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_113554370_113568129_113568224_113574687
ENSMUSG00000041632.8_99481294_99552070_1	chr13	+	1972	12	NIC	ENSMUSG00000041632.8	novel	1849	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	16	junction_6	174.354630538115	1232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGTGGTGTGATTT	NA	False	NA	20	True	AATAAA	-15	NA	99481293	99552070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99537777_99537901_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
ENSMUSG00000041632.8_99481294_99552070_2	chr13	+	1719	9	NIC	ENSMUSG00000041632.8	novel	1849	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_2	145.098027209194	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGTGGTGTGATTT	NA	False	NA	20	True	AATAAA	-15	NA	99481293	99552070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_99481384_99484839_99484918_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
ENSMUSG00000041645.15_103390366_103392106_1	chr12	-	560	2	FSM	ENSMUSG00000041645.15	ENSMUST00000220705.2	4274	2	-17	3731	-17	0	multi-exon	FALSE	canonical	3	750	junction_1	0	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATACTTTTCAGAGCAC	NA	False	NA	NA	False	AAGAAA	-26	NA	103392106	103390365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_103390857_103392037
ENSMUSG00000041650.16_122771743_122896499_1	chr14	+	1150	10	ISM	ENSMUSG00000041650.16	ENSMUST00000038374.13	2592	24	-8	230857	0	-5240	5prime_fragment	FALSE	canonical	3	76	junction_1	11.3409560421782	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTGTCTTCCATGACT	NA	False	NA	NA	False	NA	NA	NA	122771742	122896499	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089
ENSMUSG00000041650.16_122771743_123127240_1	chr14	+	2484	24	FSM	ENSMUSG00000041650.16	ENSMUST00000038374.13	2592	24	-8	116	0	0	multi-exon	FALSE	canonical	3	76	junction_1	20.0942015919555	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTAGTTTGCCCTTTTTTC	NA	False	NA	16	True	AATAAA	-19	NA	122771742	123127240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089_122896193_122901665_122901761_122905932_122906084_122922293_122922438_122923514_122923590_122927510_122927580_122929591_122929668_122938466_122938578_122951434_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
ENSMUSG00000041654.16_113135679_113456582_1	chr11	-	2659	11	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	187.885736552832	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7769	False	NA	-2	True	AATAAA	-19	NA	113456582	113135678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_113136691_113136716_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
ENSMUSG00000041654.16_113138358_113456582_1	chr11	-	1230	9	ISM	ENSMUSG00000041654.16	ENSMUST00000106633.10	2688	10	3	2679	0	-2679	5prime_fragment	FALSE	canonical	0	0	junction_4	163.816780276014	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGTGGCATAAGGCAGGA	7769	False	NA	NA	False	AATAAA	-20	NA	113456582	113138357	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
ENSMUSG00000041712.8_102724226_102742116_1	chr12	+	1411	11	FSM	ENSMUSG00000041712.8	ENSMUST00000046404.8	3261	11	0	1850	0	-1850	multi-exon	FALSE	canonical	3	541	junction_2	45.0115540722602	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTCCCCTTTCCATCCT	NA	False	NA	5	True	AATAAA	-16	NA	102724225	102742116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952
ENSMUSG00000041712.8_102724226_102742116_2	chr12	+	1381	12	NNC	ENSMUSG00000041712.8	novel	3261	11	NA	NA	0	-1850	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	181.82263630907	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTCCCCTTTCCATCCT	NA	False	NA	5	True	AATAAA	-16	NA	102724225	102742116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952_102742051_102742080
ENSMUSG00000041712.8_102724226_102742865_1	chr12	+	2160	11	FSM	ENSMUSG00000041712.8	ENSMUST00000046404.8	3261	11	0	1101	0	-1101	multi-exon	FALSE	canonical	3	541	junction_2	45.0115540722602	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTTCTGTCAGGAAAAT	NA	False	NA	NA	False	ATTAAA	-17	NA	102724225	102742865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952
ENSMUSG00000041712.8_102724226_102743966_1	chr12	+	3231	12	NNC	ENSMUSG00000041712.8	novel	3261	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	181.82263630907	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTCTGATTGTTCT	NA	False	NA	33	True	ATTAAA	-14	NA	102724225	102743966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952_102742051_102742080
ENSMUSG00000041716.8_102707991_102709904_1	chr12	-	1766	2	FSM	ENSMUSG00000096458.8	ENSMUST00000178384.2	1284	2	16	-498	0	498	multi-exon	FALSE	canonical	3	30	junction_1	0	435	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGATCTTTGTATACAT	NA	False	NA	-23	True	AATAAA	-16	NA	102709904	102707990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_102709654_102709801
ENSMUSG00000041716.8_102707991_102723900_1	chr12	-	1764	2	FSM	ENSMUSG00000041716.8	ENSMUST00000174651.2	2795	2	1031	0	1031	0	multi-exon	FALSE	canonical	3	96	junction_1	0	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGATCTTTGTATACAT	6521	False	NA	-23	True	AATAAA	-16	NA	102723900	102707990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_102709654_102723799
ENSMUSG00000041716.8_102707991_102724062_1	chr12	-	1926	2	FSM	ENSMUSG00000041716.8	ENSMUST00000174651.2	2795	2	869	0	869	0	multi-exon	FALSE	canonical	3	96	junction_1	0	917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGATCTTTGTATACAT	6359	False	NA	-23	True	AATAAA	-16	NA	102724062	102707990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_102709654_102723799
ENSMUSG00000041718.17_143101019_143107146_1	chrX	+	536	4	FSM	ENSMUSG00000041718.17	ENSMUST00000070801.11	1802	4	219	1047	0	0	multi-exon	FALSE	canonical	3	125	junction_3	294.754511792818	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTAAGTCCAGTTCATGG	NA	False	NA	13	True	AATAAA	-20	NA	143101018	143107146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_143101118_143102894_143103058_143105007_143105147_143107011
ENSMUSG00000041718.17_143101019_143107763_1	chrX	+	1153	4	FSM	ENSMUSG00000041718.17	ENSMUST00000070801.11	1802	4	219	430	0	-430	multi-exon	FALSE	canonical	3	125	junction_3	294.754511792818	839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTTGTGATCCTTCAAG	NA	False	NA	NA	False	AATAAA	-19	NA	143101018	143107763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_143101118_143102894_143103058_143105007_143105147_143107011
ENSMUSG00000041718.17_143101019_143108193_1	chrX	+	1479	4	FSM	ENSMUSG00000041718.17	ENSMUST00000149330.8	479	4	20	-1020	0	0	multi-exon	FALSE	canonical	3	125	junction_3	280.483313031077	1429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGGCTGTTACTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	143101018	143108193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_143101118_143102998_143103058_143105007_143105147_143107011
ENSMUSG00000041718.17_143101019_143108193_2	chrX	+	1583	4	FSM	ENSMUSG00000041718.17	ENSMUST00000070801.11	1802	4	219	0	0	0	multi-exon	FALSE	canonical	3	125	junction_3	294.754511792818	1194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGGCTGTTACTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	143101018	143108193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_143101118_143102894_143103058_143105007_143105147_143107011
ENSMUSG00000041718.17_143102657_143107146_1	chrX	+	483	4	NNC	ENSMUSG00000041718.17	novel	604	5	NA	NA	1638	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_1	344.679883692423	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTAAGTCCAGTTCATGG	NA	False	NA	13	True	AATAAA	-20	NA	143102656	143107146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_143102703_143102894_143103058_143105007_143105147_143107011
ENSMUSG00000041736.8_83454140_83458404_1	chr15	+	891	4	NNC	ENSMUSG00000041736.8	novel	837	4	NA	NA	6064	0	at_least_one_novel_splicesite	FALSE	canonical	3	99	junction_1	92.1013934024164	2687	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTCTGTACTTAGTGGA	NA	False	NA	21	True	AATAAA	-21	NA	83454139	83458404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_83454247_83455585_83455797_83456400_83456540_83457970
ENSMUSG00000041740.17_115379838_115385340_1	chr5	-	972	7	ISM	ENSMUSG00000041740.17	ENSMUST00000112096.9	3112	17	25614	9	-1206	0	3prime_fragment	FALSE	canonical	3	1633	junction_2	42.0304122696358	5809	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTTGAGCCGCCTTCCC	NA	False	NA	-29	True	AATAAA	-11	NA	115385340	115379837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_115380121_115380451_115380611_115380692_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227
ENSMUSG00000041740.17_115379838_115387549_1	chr5	-	1464	10	ISM	ENSMUSG00000041740.17	ENSMUST00000112097.8	3476	17	23408	367	-3	0	3prime_fragment	FALSE	canonical	3	78	junction_9	496.38100161613	6047	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTTGAGCCGCCTTCCC	NA	False	NA	-29	True	AATAAA	-11	NA	115387549	115379837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_115380121_115380451_115380611_115380692_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227_115385346_115386640_115386775_115386973_115387233_115387455
ENSMUSG00000041747.4_98384614_98399521_1	chr13	-	2831	13	FSM	ENSMUSG00000041747.4	ENSMUST00000040972.4	4120	13	28	1261	0	-1261	multi-exon	FALSE	canonical	3	368	junction_4	38.6584042896525	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGAGCCGAGGATGTCCT	NA	False	NA	-39	True	AATAAA	-16	NA	98399521	98384613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_98385885_98387079_98387139_98387292_98387427_98388436_98388539_98389252_98389403_98390151_98390237_98391426_98391563_98393608_98393735_98394343_98394523_98395612_98395798_98395881_98395975_98397306_98397479_98399382
ENSMUSG00000041747.4_98384736_98399521_1	chr13	-	2709	13	FSM	ENSMUSG00000041747.4	ENSMUST00000040972.4	4120	13	28	1383	0	-1383	multi-exon	FALSE	canonical	3	368	junction_4	38.6584042896525	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTGAGGTGTTCCTGA	NA	False	NA	-3	True	TATAAA	-19	NA	98399521	98384735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_98385885_98387079_98387139_98387292_98387427_98388436_98388539_98389252_98389403_98390151_98390237_98391426_98391563_98393608_98393735_98394343_98394523_98395612_98395798_98395881_98395975_98397306_98397479_98399382
ENSMUSG00000041747.4_98385514_98399521_1	chr13	-	1931	13	FSM	ENSMUSG00000041747.4	ENSMUST00000040972.4	4120	13	28	2161	0	-2161	multi-exon	FALSE	canonical	3	368	junction_4	38.6584042896525	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGTTTTCCATGTATT	NA	False	NA	NA	False	ATTAAA	-26	NA	98399521	98385513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_98385885_98387079_98387139_98387292_98387427_98388436_98388539_98389252_98389403_98390151_98390237_98391426_98391563_98393608_98393735_98394343_98394523_98395612_98395798_98395881_98395975_98397306_98397479_98399382
ENSMUSG00000041750.14_86893858_86896840_1	chr3	+	1280	6	FSM	ENSMUSG00000041750.14	ENSMUST00000194208.6	1527	6	0	247	0	0	multi-exon	FALSE	canonical	2	3	junction_2	24.5568727650733	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTATGTGCGGAGTG	NA	False	NA	NA	False	ATTAAA	-17	NA	86893857	86896840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_86894013_86894294_86894568_86894849_86895129_86895584_86895863_86896457_86896555_86896642
ENSMUSG00000041765.7_122116032_122257647_1	chr14	+	1340	9	FSM	ENSMUSG00000041765.7	ENSMUST00000039803.7	2139	9	0	799	0	-799	multi-exon	FALSE	canonical	3	342	junction_2	40.200862863874	761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTTATTTTTTTACTGG	8886	False	NA	19	True	ATTAAA	-16	NA	122116031	122257647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
ENSMUSG00000041765.7_122116032_122258447_1	chr14	+	2092	8	NIC	ENSMUSG00000041765.7	novel	2139	9	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	29	junction_5	124.704057836208	954	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTCAGTAGTTTTTATAC	8886	False	NA	17	True	AATAAA	-17	NA	122116031	122258447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122231636_122231883_122246202_122246326_122257361
ENSMUSG00000041765.7_122116074_122257647_1	chr14	+	1297	9	NNC	ENSMUSG00000041765.7	novel	2139	9	NA	NA	0	-799	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	138.982406710346	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTTATTTTTTTACTGG	8928	False	NA	19	True	ATTAAA	-16	NA	122116073	122257647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_122116191_122142539_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
ENSMUSG00000041765.7_122116074_122257647_2	chr14	+	1250	8	NIC	ENSMUSG00000041765.7	novel	2139	9	NA	NA	0	-799	combination_of_known_splicesites	FALSE	canonical	3	29	junction_5	124.704057836208	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTTATTTTTTTACTGG	8928	False	NA	19	True	ATTAAA	-16	NA	122116073	122257647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122231636_122231883_122246202_122246326_122257361
ENSMUSG00000041765.7_122116074_122257647_3	chr14	+	1298	9	FSM	ENSMUSG00000041765.7	ENSMUST00000039803.7	2139	9	42	799	0	-799	multi-exon	FALSE	canonical	3	342	junction_2	40.200862863874	700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTTATTTTTTTACTGG	8928	False	NA	19	True	ATTAAA	-16	NA	122116073	122257647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
ENSMUSG00000041765.7_122183726_122257647_1	chr14	+	980	6	NIC	ENSMUSG00000041765.7	novel	688	5	NA	NA	0	-799	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	151.832275883621	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTTATTTTTTTACTGG	2010	False	NA	19	True	ATTAAA	-16	NA	122183725	122257647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_122183879_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
ENSMUSG00000041765.7_122183726_122258447_1	chr14	+	1780	6	NIC	ENSMUSG00000041765.7	novel	688	5	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	151.832275883621	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTCAGTAGTTTTTATAC	2010	False	NA	17	True	AATAAA	-17	NA	122183725	122258447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_122183879_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
ENSMUSG00000041769.14_138448324_138484458_4	chr7	+	1613	8	FSM	ENSMUSG00000041769.14	ENSMUST00000155672.8	1938	8	0	325	0	-325	multi-exon	FALSE	canonical	3	482	junction_3	92.005767343628	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTAAGTCTGAGCCTT	NA	False	NA	23	True	AATAAA	-19	NA	138448323	138484458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
ENSMUSG00000041769.14_138448324_138484786_1	chr7	+	1775	7	NIC	ENSMUSG00000041769.14	novel	1938	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_2	229.285423774726	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGCAGTCTTTATTT	NA	False	NA	20	True	AATAAA	-34	NA	138448323	138484786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_138448434_138470138_138470237_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
ENSMUSG00000041774.17_16969877_17019337_1	chr16	+	2592	4	Genic_Genomic	ENSMUSG00000041774.17	novel	3097	7	NA	NA	5030	40772	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTGCTTTCCCAAAATG	NA	False	NA	NA	False	NA	NA	NA	16969876	17019337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_16972147_16977853_16978041_16994275_16994372_17019298
ENSMUSG00000041774.17_16971789_17019337_1	chr16	+	680	4	Genic_Genomic	ENSMUSG00000041774.17	novel	3097	7	NA	NA	6942	40772	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTGCTTTCCCAAAATG	NA	False	NA	NA	False	NA	NA	NA	16971788	17019337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_16972147_16977853_16978041_16994275_16994372_17019298
ENSMUSG00000041777.13_73114211_73142912_1	chr2	-	1915	9	NIC	ENSMUSG00000041777.13	novel	2821	10	NA	NA	-1	-762	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	29.521178838251	1199	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGTCCTTAAGACTTTAA	NA	False	NA	NA	False	AATAAA	-18	NA	73142912	73114210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_73115380_73116681_73116768_73117952_73118060_73134083_73134202_73136233_73136283_73136620_73136686_73137198_73137273_73140800_73140896_73142760
ENSMUSG00000041777.13_73114525_73142912_1	chr2	-	1601	9	NIC	ENSMUSG00000041777.13	novel	2821	10	NA	NA	-1	836	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	29.521178838251	898	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAAGTTTGCAGATATTT	NA	False	NA	NA	False	ATTAAA	-18	NA	73142912	73114524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_73115380_73116681_73116768_73117952_73118060_73134083_73134202_73136233_73136283_73136620_73136686_73137198_73137273_73140800_73140896_73142760
ENSMUSG00000041777.13_73115361_73142912_1	chr2	-	765	9	NIC	ENSMUSG00000041777.13	novel	2821	10	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	29.521178838251	790	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	73142912	73115360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_73115380_73116681_73116768_73117952_73118060_73134083_73134202_73136233_73136283_73136620_73136686_73137198_73137273_73140800_73140896_73142760
ENSMUSG00000041779.6_21071602_21149453_1	chr1	-	1413	11	FSM	ENSMUSG00000041779.6	ENSMUST00000037998.6	6492	11	0	5079	0	2935	multi-exon	FALSE	canonical	3	66	junction_1	7.25534285888682	222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTTGCTCCCCTGAGCC	NA	False	NA	-9	True	AATAAA	-14	NA	21149453	21071601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_21071860_21073193_21073358_21074061_21074206_21074449_21074555_21075790_21075862_21076373_21076459_21077076_21077136_21083016_21083134_21083625_21083736_21107620_21107685_21149217
ENSMUSG00000041817.15_97267492_97274381_1	chr13	+	1068	6	NNC	ENSMUSG00000041817.15	novel	6013	13	NA	NA	59341	6860	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2692	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAAGAAGGCCGAGTGGA	NA	False	NA	NA	False	NA	NA	NA	97267491	97274381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97267737_97268350_97268544_97270046_97270215_97271797_97271953_97272028_97272217_97274262
ENSMUSG00000041817.15_97267492_97274381_2	chr13	+	1061	6	NNC	ENSMUSG00000041817.15	novel	6013	13	NA	NA	59341	6860	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1887	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAAGAAGGCCGAGTGGA	NA	False	NA	NA	False	NA	NA	NA	97267491	97274381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97267737_97268350_97268525_97270042_97270227_97271801_97271953_97272028_97272217_97274262
ENSMUSG00000041817.15_97267492_97274381_3	chr13	+	1071	6	NNC	ENSMUSG00000041817.15	novel	6013	13	NA	NA	59341	6860	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10657	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAAGAAGGCCGAGTGGA	NA	False	NA	NA	False	NA	NA	NA	97267491	97274381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97267732_97268350_97268544_97270046_97270227_97271801_97271953_97272028_97272217_97274262
ENSMUSG00000041817.15_97267492_97274381_4	chr13	+	1067	6	NNC	ENSMUSG00000041817.15	novel	6013	13	NA	NA	59341	6860	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1968	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAAGAAGGCCGAGTGGA	NA	False	NA	NA	False	NA	NA	NA	97267491	97274381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97267737_97268350_97268544_97270046_97270227_97271801_97271953_97272028_97272217_97274271
ENSMUSG00000041817.15_97267492_97274381_5	chr13	+	1064	6	NNC	ENSMUSG00000041817.15	novel	6013	13	NA	NA	59341	6860	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2415	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAAGAAGGCCGAGTGGA	NA	False	NA	NA	False	NA	NA	NA	97267491	97274381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97267737_97268350_97268544_97270046_97270215_97271801_97271953_97272028_97272217_97274262
ENSMUSG00000041817.15_97267492_97274381_6	chr13	+	1066	6	NNC	ENSMUSG00000041817.15	novel	6013	13	NA	NA	59341	6860	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7191	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAAGAAGGCCGAGTGGA	NA	False	NA	NA	False	NA	NA	NA	97267491	97274381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97267737_97268360_97268544_97270046_97270227_97271801_97271953_97272028_97272217_97274262
ENSMUSG00000041817.15_97267492_97274381_7	chr13	+	1080	6	NNC	ENSMUSG00000041817.15	novel	6013	13	NA	NA	59341	6860	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3118	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAAGAAGGCCGAGTGGA	NA	False	NA	NA	False	NA	NA	NA	97267491	97274381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97267722_97268331_97268544_97270046_97270227_97271801_97271953_97272028_97272217_97274262
ENSMUSG00000041840.9_77845269_77848559_1	chr18	-	484	5	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	6921	0	at_least_one_novel_splicesite	FALSE	canonical	2	100	junction_4	550.471332132746	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTTGTTATCTGTTGC	NA	False	NA	-2	True	AATACA	-18	NA	77848559	77845268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848446
ENSMUSG00000041840.9_77845269_77855480_1	chr18	-	993	9	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	443.636112145979	1894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTTGTTATCTGTTGC	NA	False	NA	-2	True	AATACA	-18	NA	77855480	77845268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848221_77848602_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
ENSMUSG00000041840.9_77845269_77855480_2	chr18	-	1008	9	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	447.309456640478	3360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTTGTTATCTGTTGC	NA	False	NA	-2	True	AATACA	-18	NA	77855480	77845268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_77845454_77846169_77846218_77847130_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
ENSMUSG00000041840.9_77845269_77855480_3	chr18	-	878	8	NIC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_4	472.528068489274	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTTGTTATCTGTTGC	NA	False	NA	-2	True	AATACA	-18	NA	77855480	77845268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77849681_77849817_77851772_77851909_77854563_77854739_77855419
ENSMUSG00000041840.9_77845269_77855480_4	chr18	-	827	8	NIC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	3	42	junction_7	451.845061037158	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTTGTTATCTGTTGC	NA	False	NA	-2	True	AATACA	-18	NA	77855480	77845268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77855419
ENSMUSG00000041840.9_77845269_77855480_5	chr18	-	993	9	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	447.048357982668	3026	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTTGTTATCTGTTGC	NA	False	NA	-2	True	AATACA	-18	NA	77855480	77845268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854730_77855419
ENSMUSG00000041840.9_77845269_77855480_6	chr18	-	992	9	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	435.926312580464	5398	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTTGTTATCTGTTGC	NA	False	NA	-2	True	AATACA	-18	NA	77855480	77845268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_77845444_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
ENSMUSG00000041840.9_77845269_77855480_7	chr18	-	1162	9	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	100	junction_4	411.25630694252	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTTGTTATCTGTTGC	NA	False	NA	-2	True	AATACA	-18	NA	77855480	77845268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848446_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
ENSMUSG00000041840.9_77845269_77855480_8	chr18	-	1032	9	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	444.252673036415	4929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTTGTTATCTGTTGC	NA	False	NA	-2	True	AATACA	-18	NA	77855480	77845268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848761_77849681_77849817_77851772_77851909_77854563_77854739_77855419
ENSMUSG00000041841.9_5146127_5148160_1	chr15	+	371	4	NNC	ENSMUSG00000041841.9	novel	835	4	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9932.20520439556	134423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGGTGATCTAAGGTA	2248	False	NA	37	True	AATAAA	-18	NA	5146126	5148160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_5146171_5146774_5146905_5147100_5147186_5148048
ENSMUSG00000041841.9_5146127_5148160_2	chr15	+	367	4	NNC	ENSMUSG00000041841.9	novel	835	4	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9932.20520439556	125772	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGGTGATCTAAGGTA	2248	False	NA	37	True	AATAAA	-18	NA	5146126	5148160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_5146167_5146774_5146905_5147100_5147186_5148048
ENSMUSG00000041841.9_5146161_5148119_1	chr15	+	298	4	FSM	ENSMUSG00000041841.9	ENSMUST00000045356.9	835	4	34	503	-15	0	multi-exon	FALSE	canonical	3	15185	junction_3	3886.71174930972	1567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTTCAATCAGTCATAAAA	2282	False	NA	-4	True	NA	NA	NA	5146160	5148119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_5146167_5146768_5146905_5147100_5147186_5148048
ENSMUSG00000041841.9_5146161_5148119_2	chr15	+	292	4	NNC	ENSMUSG00000041841.9	novel	835	4	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9932.20520439556	1071	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTTCAATCAGTCATAAAA	2282	False	NA	-4	True	NA	NA	NA	5146160	5148119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_5146167_5146774_5146905_5147100_5147186_5148048
ENSMUSG00000041841.9_5146176_5148160_1	chr15	+	547	4	NNC	ENSMUSG00000041841.9	novel	556	4	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	9909.82187304876	36841	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGGTGATCTAAGGTA	2297	False	NA	37	True	AATAAA	-18	NA	5146175	5148160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_5146390_5146768_5146905_5147100_5147186_5148048
ENSMUSG00000041846.16_101005771_101008835_1	chr12	-	1617	3	ISM	ENSMUSG00000041846.16	ENSMUST00000222956.2	6009	5	6093	0	969	0	3prime_fragment	FALSE	canonical	3	499	junction_2	93	399	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTATTAATTGTATGTTTC	7300	False	NA	-24	True	AATAAA	-25	NA	101008835	101005770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_101007039_101008083_101008311_101008713
ENSMUSG00000041846.16_101006174_101008835_1	chr12	-	1214	3	ISM	ENSMUSG00000041846.16	ENSMUST00000222956.2	6009	5	6093	403	969	0	3prime_fragment	FALSE	canonical	3	499	junction_2	93	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATAGCCTAACGTGCTGG	7300	False	NA	NA	False	ATTAAA	-14	NA	101008835	101006173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_101007039_101008083_101008311_101008713
ENSMUSG00000041846.16_101006302_101008835_1	chr12	-	1086	3	ISM	ENSMUSG00000041846.16	ENSMUST00000222956.2	6009	5	6093	531	969	-128	3prime_fragment	FALSE	canonical	3	499	junction_2	93	70	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGTCATTTGTGTCAT	7300	False	NA	0	True	ATTAAA	-18	NA	101008835	101006301	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_101007039_101008083_101008311_101008713
ENSMUSG00000041879.14_135322814_135358179_1	chr1	-	941	6	NNC	ENSMUSG00000041879.14	novel	6247	24	NA	NA	-8	-911	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	247.823808380067	232	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACAAAATTTGTAACATG	NA	False	NA	NA	False	NA	NA	NA	135358179	135322813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_135322994_135336983_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135358005
ENSMUSG00000041881.14_34043568_34044820_1	chr17	+	333	2	FSM	ENSMUSG00000041881.14	ENSMUST00000173182.2	610	2	0	277	0	0	multi-exon	FALSE	canonical	3	8081	junction_1	0	2481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGTTCTCTTGAACTT	4096	False	NA	11	True	NA	NA	NA	34043567	34044820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34043655_34044574
ENSMUSG00000041912.13_94320607_94333615_1	chr3	+	1168	6	FSM	ENSMUSG00000041912.13	ENSMUST00000200486.5	1231	6	-17	80	0	0	multi-exon	FALSE	canonical	2	27	junction_5	8.74070935336486	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAGAAATATGTTGACAAA	NA	False	NA	NA	False	AATAAA	-30	NA	94320606	94333615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331998_94332869_94333010_94333097
ENSMUSG00000041921.17_71283677_71355538_1	chr2	+	1358	11	NIC	ENSMUSG00000041921.17	novel	1321	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	24.3969260358759	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTGTGTCCAGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	71283676	71355538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_71283743_71331122_71331214_71337128_71337287_71340084_71340235_71341755_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
ENSMUSG00000041935.11_4015079_4025226_1	chr15	-	1514	6	FSM	ENSMUSG00000041935.11	ENSMUST00000046633.10	5076	6	0	3562	0	633	multi-exon	FALSE	canonical	3	175	junction_4	35.1681674245332	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGTAAATTCAGTATAGA	2180	False	NA	NA	False	TTTAAA	-28	NA	4025226	4015078	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_4015962_4018072_4018188_4019036_4019169_4021199_4021347_4021839_4021947_4025096
ENSMUSG00000041935.11_4015190_4025226_1	chr15	-	1403	6	FSM	ENSMUSG00000041935.11	ENSMUST00000046633.10	5076	6	0	3673	0	522	multi-exon	FALSE	canonical	3	175	junction_4	35.1681674245332	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAAACTTATTTATTTTG	2180	False	NA	NA	False	ATTAAA	-18	NA	4025226	4015189	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_4015962_4018072_4018188_4019036_4019169_4021199_4021347_4021839_4021947_4025096
ENSMUSG00000041939.15_114582347_114591211_1	chr5	+	1030	7	ISM	ENSMUSG00000041939.15	ENSMUST00000112239.9	1602	11	0	7327	0	0	5prime_fragment	FALSE	canonical	3	9	junction_3	45.4596891029111	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGGCTGTCTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	114582346	114591211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588301_114588483_114588766_114588923_114590425_114590530_114590940
ENSMUSG00000041966.19_70794905_70885927_1	chr2	+	2119	10	NIC	ENSMUSG00000041966.19	novel	1214	11	NA	NA	-90767	-22562	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGCAGCCCTACGGCGCAG	NA	False	NA	NA	False	NA	NA	NA	70794904	70885927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70810720_70810771_70812198_70812312_70823827_70823920_70848563_70848719_70885714
ENSMUSG00000042010.17_114328133_114336469_1	chr5	+	1291	9	ISM	ENSMUSG00000042010.17	ENSMUST00000031583.15	8482	52	24554	52347	-9707	8070	internal_fragment	FALSE	canonical	3	21	junction_5	4.66368952654441	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGTATAGGCCTGAATA	4780	False	NA	NA	False	NA	NA	NA	114328132	114336469	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_114328247_114328390_114328473_114329215_114329315_114329912_114330023_114330134_114330246_114333284_114333495_114333695_114333867_114334720_114334883_114336237
ENSMUSG00000042010.17_114386332_114388822_1	chr5	+	1624	4	ISM	ENSMUSG00000042010.17	ENSMUST00000143276.2	6680	41	48492	-2	-62	0	3prime_fragment	FALSE	canonical	3	58	junction_1	12.0369800568452	174	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTGGCCTTGATTTATT	5498	False	NA	9	True	AATAAA	-19	NA	114386331	114388822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_114386380_114386644_114386816_114386935_114387073_114387554
ENSMUSG00000042032.14_40570141_40583450_1	chr11	-	1798	7	FSM	ENSMUSG00000042032.14	ENSMUST00000040167.11	1949	7	151	0	-2	0	multi-exon	FALSE	canonical	3	244	junction_6	119.767367100652	1750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40583450	40570140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40583304
ENSMUSG00000042032.14_40570141_40583450_2	chr11	-	1931	8	NNC	ENSMUSG00000042032.14	novel	1949	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	250.632261714738	1741	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40583450	40570140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40578850_40578984_40583304
ENSMUSG00000042032.14_40570141_40585814_2	chr11	-	1809	7	NIC	ENSMUSG00000042032.14	novel	2053	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	204.398032171436	1626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40585814	40570140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576141_40578427_40578623_40585629
ENSMUSG00000042032.14_40570768_40583450_1	chr11	-	1171	7	FSM	ENSMUSG00000042032.14	ENSMUST00000040167.11	1949	7	151	627	-2	-627	multi-exon	FALSE	canonical	3	244	junction_6	119.767367100652	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTTAATTGTGACACATG	NA	False	NA	NA	False	AATAAA	-22	NA	40583450	40570767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40583304
ENSMUSG00000042043.7_94925418_94979292_1	chr13	+	421	4	FSM	ENSMUSG00000042043.7	ENSMUST00000046644.7	559	4	0	138	0	-114	multi-exon	FALSE	canonical	3	1242	junction_3	49.6185449202211	1459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTGTTTTCAGCCACTG	NA	False	NA	-40	True	ATTAAA	-21	NA	94925417	94979292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_94925511_94968867_94968974_94973615_94973703_94979157
ENSMUSG00000042055.14_129193642_129202405_1	chr7	+	657	4	ISM	ENSMUSG00000042055.14	ENSMUST00000136734.8	4989	11	0	11621	0	-7127	5prime_fragment	FALSE	canonical	3	164	junction_2	6.34209919681348	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAACGTTCTCTGCCTTCA	NA	False	NA	NA	False	AATAAA	-21	NA	129193641	129202405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_129193788_129194699_129194812_129200748_129200903_129202160
ENSMUSG00000042055.14_129234118_129237460_1	chr7	+	1173	4	ISM	ENSMUSG00000042055.14	ENSMUST00000140877.8	2191	11	7338	-2	3361	0	3prime_fragment	FALSE	canonical	3	171	junction_1	6.48074069840786	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTGTTGTTTGAGTCTC	NA	False	NA	4	True	AATAAA	-17	NA	129234117	129237460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_129234146_129234433_129234580_129235373_129235454_129236541
ENSMUSG00000042073.16_106325852_106330122_1	chr9	+	1467	4	FSM	ENSMUSG00000042073.16	ENSMUST00000048527.15	1745	4	278	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.4142135623731	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTTTTGCTGTCTCCGG	NA	False	NA	13	True	AATAAA	-20	NA	106325851	106330122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106325909_106327202_106327431_106328591_106328834_106329182
ENSMUSG00000042078.15_114166186_114180942_1	chr5	-	1088	9	ISM	ENSMUSG00000042078.15	ENSMUST00000134790.8	1682	15	22337	0	0	0	3prime_fragment	FALSE	canonical	3	12	junction_8	2.91279504943276	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTGTTTGACCATGTT	NA	False	NA	NA	False	NA	NA	NA	114180942	114166185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_114166526_114168157_114168248_114169621_114169704_114170769_114170882_114173213_114173322_114176596_114176674_114179884_114179959_114180248_114180378_114180866
ENSMUSG00000042079.14_117883756_117902113_1	chr6	+	1680	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	0	467	0	-467	multi-exon	FALSE	canonical	3	2150	junction_1	1335.10981654028	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTTCTCATGCAAACTTT	3734	False	NA	NA	False	ATTAAA	-15	NA	117883755	117902113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
ENSMUSG00000042079.14_117884777_117902583_1	chr6	+	2169	4	NNC	ENSMUSG00000042079.14	novel	2280	3	NA	NA	967	0	at_least_one_novel_splicesite	FALSE	canonical	3	602	junction_1	2063.97825139274	5168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCACAGCTTATGTACTC	4755	False	NA	NA	False	AATAAA	-17	NA	117884776	117902583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_117884841_117894430_117894560_117896059_117896121_117900668
ENSMUSG00000042079.14_117893942_117902113_1	chr6	+	1726	4	FSM	ENSMUSG00000042079.14	ENSMUST00000179478.8	956	4	0	-770	0	-467	multi-exon	FALSE	canonical	3	625	junction_1	2053.14430948133	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTTCTCATGCAAACTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	117893941	117902113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_117894033_117894430_117894560_117896059_117896121_117900668
ENSMUSG00000042079.14_117893942_117902583_1	chr6	+	2196	4	FSM	ENSMUSG00000042079.14	ENSMUST00000179478.8	956	4	0	-1240	0	0	multi-exon	FALSE	canonical	3	625	junction_1	2053.14430948133	5152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCACAGCTTATGTACTC	NA	False	NA	NA	False	AATAAA	-17	NA	117893941	117902583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_117894033_117894430_117894560_117896059_117896121_117900668
ENSMUSG00000042097.18_117840038_117846432_1	chr6	+	500	3	ISM	ENSMUSG00000042097.18	ENSMUST00000134619.8	786	4	0	1268	0	-227	5prime_fragment	FALSE	canonical	3	15	junction_2	9.5	71	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGAGGTCCAAGACCCATGG	NA	False	NA	NA	False	AATAAA	-16	NA	117840037	117846432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_117840104_117843355_117843536_117846178
ENSMUSG00000042097.18_117840038_117847489_1	chr6	+	650	5	NNC	ENSMUSG00000042097.18	novel	786	4	NA	NA	0	61	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_4	9.98436277385793	36	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTCAGGATTTTTCCTAG	NA	False	NA	NA	False	TTTAAA	-18	NA	117840037	117847489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_117840104_117843355_117843536_117846178_117846235_117846362_117846438_117847216
ENSMUSG00000042099.17_34029493_34041892_1	chr17	+	728	5	NIC	ENSMUSG00000042099.17	novel	2641	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	162.014466946628	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGTATTGTGTGGATGGAA	NA	False	NA	13	True	AATAAA	-16	NA	34029492	34041892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_34029540_34040742_34040889_34040979_34041181_34041259_34041350_34041648
ENSMUSG00000042099.17_34036881_34041892_2	chr17	+	1822	9	ISM	ENSMUSG00000042099.17	ENSMUST00000048560.11	2641	11	7387	0	0	0	3prime_fragment	FALSE	canonical	3	265	junction_4	41.1868835310466	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGTATTGTGTGGATGGAA	4519	False	NA	13	True	AATAAA	-16	NA	34036880	34041892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_34037419_34037499_34037600_34037773_34037972_34038065_34038154_34038753_34038971_34040742_34040889_34040979_34041181_34041259_34041350_34041648
ENSMUSG00000042099.17_34037091_34041892_2	chr17	+	1612	9	ISM	ENSMUSG00000042099.17	ENSMUST00000234357.2	1640	10	210	-1	210	0	3prime_fragment	FALSE	canonical	3	265	junction_4	41.1868835310466	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGTATTGTGTGGATGGAA	4729	False	NA	13	True	AATAAA	-16	NA	34037090	34041892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_34037419_34037499_34037600_34037773_34037972_34038065_34038154_34038753_34038971_34040742_34040889_34040979_34041181_34041259_34041350_34041648
ENSMUSG00000042111.10_34475759_34478453_1	chr1	-	1397	5	FSM	ENSMUSG00000042111.10	ENSMUST00000042493.10	1705	5	300	8	300	0	multi-exon	FALSE	canonical	3	256	junction_1	5.33853912601566	890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTCACAGAGCTCTCAT	7504	False	NA	-7	True	AATAAA	-15	NA	34478453	34475758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_34476692_34476807_34476940_34477930_34478014_34478123_34478228_34478308
ENSMUSG00000042133.17_69553198_69579718_1	chr2	+	1530	15	NIC	ENSMUSG00000042133.17	novel	6127	14	NA	NA	0	-174	combination_of_known_junctions	TRUE	canonical	3	54	junction_1	118.295461986209	430	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTAGAAAAGGAAAAGAAAGC	NA	False	NA	65	True	NA	NA	NA	69553197	69579718	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_69553302_69561834_69561925_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
ENSMUSG00000042178.7_127837673_127844272_1	chr7	+	2690	6	FSM	ENSMUSG00000042178.7	ENSMUST00000044660.6	3834	6	1144	0	1144	0	multi-exon	FALSE	canonical	3	88	junction_1	5.30659966456864	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGGGGTCGTCTG	NA	False	NA	10	True	ATTAAA	-21	NA	127837672	127844272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_127837762_127839053_127839162_127839254_127840042_127841351_127841849_127842511_127842645_127843196
ENSMUSG00000042185.15_31297488_31303581_1	chr9	+	575	3	ISM	ENSMUSG00000042185.15	ENSMUST00000131540.8	645	4	-12	2460	0	-2460	5prime_fragment	FALSE	canonical	3	76	junction_2	4.5	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCTTCATGACGAGTTTT	NA	False	NA	NA	False	AATAAA	-12	NA	31297487	31303581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_31297567_31300172_31300346_31303258
ENSMUSG00000042195.10_53679035_53725438_1	chr9	+	2345	8	FSM	ENSMUSG00000042195.10	ENSMUST00000048670.10	2558	8	213	0	213	0	multi-exon	FALSE	canonical	3	165	junction_1	9.10931346681706	650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGTAGAATCACAATGT	NA	False	NA	39	True	ATTAAA	-15	NA	53679034	53725438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_53679179_53705121_53705298_53708294_53708423_53713901_53714062_53715329_53715487_53716969_53717023_53718158_53718314_53724066
ENSMUSG00000042197.14_33821532_33853466_1	chr1	-	833	7	NNC	ENSMUSG00000042197.14	novel	542	2	NA	NA	0	-273	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_1	116.134500568187	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTCTGCTGTGGCTCATT	NA	False	NA	NA	False	AATAAA	-18	NA	33853466	33821531	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_33821763_33822121_33822273_33822933_33823046_33825487_33825614_33844419_33844501_33852807_33852892_33853418
ENSMUSG00000042198.13_3938914_3941424_1	chr4	+	545	3	ISM	ENSMUSG00000042198.13	ENSMUST00000041122.11	672	5	0	2104	0	5	5prime_fragment	FALSE	canonical	3	280	junction_1	86	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCCTGGCCAGTGTATTT	-5	True	NA	NA	False	AATAAA	-21	NA	3938913	3941424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_3939132_3939378_3939527_3941245
ENSMUSG00000042198.13_3938914_3943526_1	chr4	+	656	5	NNC	ENSMUSG00000042198.13	novel	672	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	164.03105651065	5584	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTTTGGGGTTTTTTTT	-5	True	NA	28	True	ATTAAA	-21	NA	3938913	3943526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_3939118_3939378_3939527_3941245_3941312_3942720_3942820_3943387
ENSMUSG00000042198.13_3939043_3943526_1	chr4	+	541	5	FSM	ENSMUSG00000042198.13	ENSMUST00000041122.11	672	5	129	2	0	0	multi-exon	FALSE	canonical	3	280	junction_1	68.1762421962372	1227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTTTGGGGTTTTTTTT	124	False	NA	28	True	ATTAAA	-21	NA	3939042	3943526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720_3942820_3943387
ENSMUSG00000042203.9_29768765_29803780_1	chr17	+	1968	9	NNC	ENSMUSG00000042203.9	novel	3595	13	NA	NA	0	-22088	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	44.8857925740428	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATATGTATTTATGTATA	NA	False	NA	NA	False	AATAAA	-24	NA	29768764	29803780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_29768969_29783405_29783463_29787365_29787674_29789560_29789741_29790638_29790710_29791943_29792073_29794129_29794196_29797802_29797918_29802942
ENSMUSG00000042210.18_106317250_106324843_1	chr9	-	1227	7	NIC	ENSMUSG00000042210.18	novel	1256	7	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	104.56165113888	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTTGTGTTTCCTGAC	NA	False	NA	1	True	AATAAA	-28	NA	106324843	106317249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323029_106324729
ENSMUSG00000042210.18_106317250_106324843_2	chr9	-	1286	7	NIC	ENSMUSG00000042210.18	novel	1256	7	NA	NA	-24	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_2	104.893067242576	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTTGTGTTTCCTGAC	NA	False	NA	1	True	AATAAA	-28	NA	106324843	106317249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_106317604_106317819_106318110_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323034_106324729
ENSMUSG00000042210.18_106317250_106324843_3	chr9	-	1281	7	NIC	ENSMUSG00000042210.18	novel	1256	7	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	104.56165113888	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTTGTGTTTCCTGAC	NA	False	NA	1	True	AATAAA	-28	NA	106324843	106317249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_106317604_106317819_106318110_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323029_106324729
ENSMUSG00000042210.18_106317250_106324843_4	chr9	-	1227	7	NIC	ENSMUSG00000042210.18	novel	1256	7	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	104.893067242576	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTTGTGTTTCCTGAC	NA	False	NA	1	True	AATAAA	-28	NA	106324843	106317249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322851_106322969_106323034_106324729
ENSMUSG00000042210.18_106317250_106324843_5	chr9	-	1232	7	NIC	ENSMUSG00000042210.18	novel	1256	7	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	104.893067242576	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTTGTGTTTCCTGAC	NA	False	NA	1	True	AATAAA	-28	NA	106324843	106317249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323034_106324729
ENSMUSG00000042213.18_116241183_116251577_1	chr6	+	1135	2	ISM	ENSMUSG00000042213.18	ENSMUST00000220845.2	1163	7	-23	31254	0	-31254	5prime_fragment	FALSE	canonical	3	17	junction_1	0	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGAGTGGGTGGAATTATT	NA	False	NA	NA	False	AATACA	-15	NA	116241182	116251577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_116241274_116250533
ENSMUSG00000042213.18_116241183_116265371_1	chr6	+	964	5	ISM	ENSMUSG00000042213.18	ENSMUST00000112900.9	3220	12	0	41888	0	-17460	5prime_fragment	FALSE	canonical	2	5	junction_4	4.43705983732471	40	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTGTTTCCATTCATTT	NA	False	NA	NA	False	TATAAA	-38	NA	116241182	116265371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_116241274_116250533_116250834_116261700_116261777_116262814_116262883_116264942
ENSMUSG00000042215.9_33784565_33785414_1	chr1	-	806	2	NNC	ENSMUSG00000042215.9	novel	1860	3	NA	NA	2386	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	126	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTAGCATTGGCCATTAT	NA	False	NA	-5	True	NA	NA	NA	33785414	33784564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_33785227_33785270
ENSMUSG00000042215.9_33784565_33796808_1	chr1	-	1748	4	NNC	ENSMUSG00000042215.9	novel	1860	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	21.2968437932844	168	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTAGCATTGGCCATTAT	NA	False	NA	-5	True	NA	NA	NA	33796808	33784564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_33785227_33785270_33786098_33787297_33787408_33796659
ENSMUSG00000042216.14_113421818_113428454_1	chr5	-	947	6	NNC	ENSMUSG00000042216.14	novel	1102	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_5	27.2176413379264	92	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAGAGTGGTGTCTGTCC	NA	False	NA	NA	False	ATTAAA	-18	NA	113428454	113421817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192_113428261_113428416
ENSMUSG00000042229.10_134428915_134435623_1	chr1	+	1855	2	NNC	ENSMUSG00000042229.10	novel	2861	2	NA	NA	6529	-889	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	775	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTCATCTGTTTTCTGG	779	False	NA	NA	False	ATTAAA	-1	NA	134428914	134435623	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_134428960_134433813
ENSMUSG00000042271.14_141009766_141022688_1	chrX	+	2445	4	NIC	ENSMUSG00000042271.14	novel	2532	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	108.812785196512	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141009765	141022688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_141009928_141011286_141011378_141019779_141019925_141020641
ENSMUSG00000042275.10_115224892_115226733_1	chr13	-	767	2	NNC	ENSMUSG00000042275.10	novel	1600	2	NA	NA	-11	-1	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTCTAGTTCGAGTTA	NA	False	NA	-2	True	AATAAA	-21	NA	115226733	115224891	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_115225498_115226572
ENSMUSG00000042286.14_30858021_30861079_1	chr14	-	923	7	NIC	ENSMUSG00000042286.14	novel	1236	8	NA	NA	726	2949	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	129	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGGGAAGATGGGTCTG	NA	False	NA	NA	False	NA	NA	NA	30861079	30858020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_30858125_30858224_30858327_30858552_30858635_30860080_30860168_30860288_30860430_30860565_30860631_30860737
ENSMUSG00000042286.14_30858276_30861081_1	chr14	-	770	6	NIC	ENSMUSG00000042286.14	novel	1236	8	NA	NA	724	2694	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	118	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGAAGAGTTGGCGCCAATC	NA	False	NA	NA	False	AAAAAG	-31	NA	30861081	30858275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_30858327_30858552_30858635_30860080_30860168_30860288_30860430_30860565_30860631_30860737
ENSMUSG00000042298.19_62203923_62206076_1	chr11	+	1323	2	ISM	ENSMUSG00000042298.19	ENSMUST00000101075.11	2193	9	31615	-4	4055	4	3prime_fragment	FALSE	canonical	3	196	junction_1	0	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTATGGATTCTAATAATC	NA	False	NA	20	True	AATAAA	-16	NA	62203922	62206076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_62204005_62204835
ENSMUSG00000042305.13_134275259_134289679_1	chr1	-	1367	8	NNC	ENSMUSG00000042305.13	novel	1689	9	NA	NA	0	161	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	265.828009457703	117	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTGATTTGTGCATCT	NA	False	NA	0	True	AATAAA	-28	NA	134289679	134275258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_134275709_134277916_134277977_134280092_134280174_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
ENSMUSG00000042305.13_134275528_134289679_1	chr1	-	1414	8	NNC	ENSMUSG00000042305.13	novel	1689	9	NA	NA	0	-108	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	214.632196074673	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCCTCATTTTCTGTGT	NA	False	NA	-9	True	TATAAA	-38	NA	134289679	134275527	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_134275933_134277820_134277969_134280088_134280174_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
ENSMUSG00000042312.11_90420982_90431888_1	chr3	+	780	4	NNC	ENSMUSG00000042312.11	novel	715	4	NA	NA	-760	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	161.470327511486	7844	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTATTTATTTATTTA	NA	False	NA	15	True	AATAAA	-20	NA	90420981	90431888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_90421081_90422067_90422327_90423156_90423350_90431659
ENSMUSG00000042312.11_90421297_90431888_1	chr3	+	701	4	NNC	ENSMUSG00000042312.11	novel	715	4	NA	NA	-445	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	161.897772958398	7709	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTATTTATTTATTTA	NA	False	NA	15	True	AATAAA	-20	NA	90421296	90431888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_90421410_90422160_90422327_90423156_90423350_90431659
ENSMUSG00000042312.11_90421742_90431888_1	chr3	+	599	4	NNC	ENSMUSG00000042312.11	novel	715	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	180.342883296113	768	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTATTTATTTATTTA	NA	False	NA	15	True	AATAAA	-20	NA	90421741	90431888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_90421773_90422067_90422327_90423269_90423350_90431659
ENSMUSG00000042312.11_90422299_90431888_1	chr3	+	1280	2	NIC	ENSMUSG00000042312.11	novel	715	4	NA	NA	557	0	intron_retention	FALSE	canonical	3	396	junction_1	0	6486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTATTTATTTATTTA	NA	False	NA	15	True	AATAAA	-20	NA	90422298	90431888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_90423350_90431659
ENSMUSG00000042350.14_85017671_85030077_1	chr12	-	756	8	NNC	ENSMUSG00000042350.14	novel	5446	20	NA	NA	-12403	-19815	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3985	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCCGGCAAAGGCCAAC	NA	False	NA	NA	False	NA	NA	NA	85030077	85017670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_85017740_85017988_85018064_85019763_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
ENSMUSG00000042350.14_85017671_85030077_2	chr12	-	746	8	NNC	ENSMUSG00000042350.14	novel	5446	20	NA	NA	-12403	-19815	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3400	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCCGGCAAAGGCCAAC	NA	False	NA	NA	False	NA	NA	NA	85030077	85017670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_85017740_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85026231_85027280_85027377_85029009_85029105_85029942
ENSMUSG00000042350.14_85017671_85030077_3	chr12	-	757	8	NNC	ENSMUSG00000042350.14	novel	5446	20	NA	NA	-12403	-19815	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6636	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCCGGCAAAGGCCAAC	NA	False	NA	NA	False	NA	NA	NA	85030077	85017670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_85017740_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85026242_85027280_85027377_85029009_85029105_85029942
ENSMUSG00000042350.14_85017671_85030077_4	chr12	-	743	8	NNC	ENSMUSG00000042350.14	novel	5446	20	NA	NA	-12403	-19815	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5934	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCCGGCAAAGGCCAAC	NA	False	NA	NA	False	NA	NA	NA	85030077	85017670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_85017740_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029015_85029105_85029942
ENSMUSG00000042350.14_85017671_85030077_5	chr12	-	738	8	NNC	ENSMUSG00000042350.14	novel	5446	20	NA	NA	-12403	-19815	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1292	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCCGGCAAAGGCCAAC	NA	False	NA	NA	False	NA	NA	NA	85030077	85017670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_85017740_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85026231_85027288_85027377_85029009_85029105_85029942
ENSMUSG00000042354.8_30734390_30740975_1	chr14	-	1744	15	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	19	junction_3	239.182589718587	2156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30740975	30734389	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_30734592_30734679_30734747_30735123_30735213_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
ENSMUSG00000042354.8_30734390_30741018_1	chr14	-	1849	15	NNC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	242.349858843847	5102	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30741018	30734389	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739118_30739232_30739371_30739764_30739824_30740885
ENSMUSG00000042354.8_30734390_30741018_2	chr14	-	1870	15	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_10	231.923511757912	5834	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30741018	30734389	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738769_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
ENSMUSG00000042357.3_127248991_127251974_1	chr4	-	1329	2	NNC	ENSMUSG00000042357.3	novel	1721	2	NA	NA	0	-389	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2674	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAAGGTGTCCTTTGGGTC	404	False	NA	-9	True	AATAAA	-19	NA	127251974	127248990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_127250164_127251818
ENSMUSG00000042357.3_127248991_127251974_2	chr4	-	1332	2	FSM	ENSMUSG00000042357.3	ENSMUST00000046498.3	1721	2	0	389	0	-389	multi-exon	FALSE	canonical	3	573	junction_1	0	2782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAAGGTGTCCTTTGGGTC	404	False	NA	-9	True	AATAAA	-19	NA	127251974	127248990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_127250167_127251818
ENSMUSG00000042357.3_127249347_127251974_1	chr4	-	976	2	FSM	ENSMUSG00000042357.3	ENSMUST00000046498.3	1721	2	0	745	0	-745	multi-exon	FALSE	canonical	3	573	junction_1	0	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGAAAACCATTCTGTGA	404	False	NA	NA	False	NA	NA	NA	127251974	127249346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_127250167_127251818
ENSMUSG00000042357.3_127249609_127251974_1	chr4	-	714	2	FSM	ENSMUSG00000042357.3	ENSMUST00000046498.3	1721	2	0	1007	0	-1007	multi-exon	FALSE	canonical	3	573	junction_1	0	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCGAGAAAAACATCTTCAT	404	False	NA	NA	False	NA	NA	NA	127251974	127249608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_127250167_127251818
ENSMUSG00000042359.19_76422161_76426389_1	chr2	+	534	4	ISM	ENSMUSG00000042359.19	ENSMUST00000111930.9	3853	25	185259	551	23697	0	3prime_fragment	FALSE	canonical	3	41	junction_2	1.69967317119759	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTTATAGCTACGCGT	NA	False	NA	6	True	AATAAA	-17	NA	76422160	76426389	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_76422273_76423683_76423811_76425107_76425231_76426217
ENSMUSG00000042360.13_3190666_3199782_1	chr9	-	807	5	NNC	ENSMUSG00000042360.13	novel	1204	6	NA	NA	0	-395	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	4.41588043316392	89	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGGTTCAGAAGACCTTC	NA	False	NA	NA	False	AATAAA	-22	NA	3199782	3190665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_3190806_3192311_3192413_3192819_3193049_3197276_3197368_3199536
ENSMUSG00000042363.15_20775592_20781056_1	chr11	-	1346	5	FSM	ENSMUSG00000042363.15	ENSMUST00000047028.9	3362	5	0	2016	0	758	multi-exon	FALSE	canonical	3	286	junction_4	26.8269920043228	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGGGAACTTTTGTTTGC	NA	False	NA	NA	False	GATAAA	-20	NA	20781056	20775591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_20776516_20779268_20779447_20780037_20780127_20780275_20780348_20780973
ENSMUSG00000042363.15_20776112_20781056_1	chr11	-	826	5	FSM	ENSMUSG00000042363.15	ENSMUST00000047028.9	3362	5	0	2536	0	238	multi-exon	FALSE	canonical	3	286	junction_4	26.8269920043228	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAATGGATTTGTGATGA	NA	False	NA	NA	False	AATACA	-27	NA	20781056	20776111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_20776516_20779268_20779447_20780037_20780127_20780275_20780348_20780973
ENSMUSG00000042367.13_127219028_127224005_1	chr4	-	1805	2	NNC	ENSMUSG00000042367.13	novel	1623	2	NA	NA	632	0	at_least_one_novel_splicesite	FALSE	canonical	3	106	junction_1	0	4458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127224005	127219027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_127220565_127223737
ENSMUSG00000042367.13_127219028_127224413_1	chr4	-	1656	2	FSM	ENSMUSG00000042367.13	ENSMUST00000046532.4	1880	2	224	0	224	0	multi-exon	FALSE	canonical	3	980	junction_1	0	4730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127224413	127219027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_127220565_127224294
ENSMUSG00000042380.9_127137577_127141399_1	chr4	+	819	2	FSM	ENSMUSG00000042380.9	ENSMUST00000142029.2	1022	2	0	203	0	-203	multi-exon	FALSE	canonical	3	445	junction_1	0	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCTTTCTTATTTTCCT	NA	False	NA	15	True	NA	NA	NA	127137576	127141399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_127137692_127140695
ENSMUSG00000042389.14_115521667_115555297_1	chr6	+	1690	11	NIC	ENSMUSG00000042389.14	novel	2106	12	NA	NA	0	-292	combination_of_known_junctions	FALSE	canonical	3	50	junction_2	74.5318723768563	700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTTTTGAGAGAATAAATG	NA	False	NA	14	True	AATAAA	-14	NA	115521666	115555297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_115521690_115524782_115524992_115530951_115530989_115536553_115537062_115538340_115538419_115542837_115542889_115545656_115545796_115551523_115551561_115552822_115552935_115553856_115553947_115554891
ENSMUSG00000042396.11_48396209_48406630_1	chr9	-	667	4	NNC	ENSMUSG00000042396.11	novel	2629	4	NA	NA	-31	3792	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	193.524043869374	60	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTCAGTATTTTTCCTC	NA	False	NA	NA	False	AATAAA	-26	NA	48406630	48396208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_48396449_48404706_48404795_48405318_48405482_48406454
ENSMUSG00000042396.11_48400489_48406599_1	chr9	-	1392	6	FSM	ENSMUSG00000042396.11	ENSMUST00000214923.2	1867	6	-5	480	0	-480	multi-exon	FALSE	canonical	0	0	junction_4	182.483314305719	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCAGTCATCTGCTTAT	NA	False	NA	-10	True	AATAAA	-14	NA	48406599	48400488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48405582_48405688_48406454
ENSMUSG00000042396.11_48400489_48406599_2	chr9	-	1287	5	FSM	ENSMUSG00000042396.11	ENSMUST00000170000.4	1773	5	-2	488	0	-480	multi-exon	FALSE	canonical	3	400	junction_3	15.188400179084	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCAGTCATCTGCTTAT	NA	False	NA	-10	True	AATAAA	-14	NA	48406599	48400488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48406454
ENSMUSG00000042396.11_48403897_48406599_1	chr9	-	1206	3	ISM	ENSMUSG00000042396.11	ENSMUST00000170000.4	1773	5	-2	3896	0	0	5prime_fragment	FALSE	canonical	3	400	junction_1	12	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	48406599	48403896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_48404795_48405318_48405482_48406454
ENSMUSG00000042401.9_42271971_42286501_1	chr19	-	891	5	ISM	ENSMUSG00000042401.9	ENSMUST00000048630.8	2618	15	133721	497	-10108	0	3prime_fragment	FALSE	canonical	3	50	junction_1	10.2347447452294	141	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCTTTGTGGAAAACTAT	NA	False	NA	-17	True	AATAAA	-17	NA	42286501	42271970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092
ENSMUSG00000042401.9_42271971_42295569_1	chr19	-	1223	10	NNC	ENSMUSG00000042401.9	novel	2618	15	NA	NA	-19176	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_9	18.8325958557674	244	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCTTTGTGGAAAACTAT	2515	False	NA	-17	True	AATAAA	-17	NA	42295569	42271970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42295464
ENSMUSG00000042406.9_80139385_80141742_1	chr15	+	1442	4	FSM	ENSMUSG00000042406.9	ENSMUST00000229828.2	659	4	-1	-782	0	0	multi-exon	FALSE	canonical	3	33	junction_1	614.772044473939	9973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4145	False	NA	32	True	AATAAA	-20	NA	80139384	80141742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_80139486_80139768_80139887_80140407_80140723_80140834
ENSMUSG00000042406.9_80139724_80141080_1	chr15	+	724	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	339	662	0	120	multi-exon	FALSE	canonical	3	1292	junction_2	43	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTTGCAGCCTTTCCCC	4484	False	NA	11	True	AATAAA	-24	NA	80139723	80141080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_80139887_80140407_80140723_80140834
ENSMUSG00000042406.9_80139724_80141742_1	chr15	+	1386	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	339	0	0	0	multi-exon	FALSE	canonical	3	1292	junction_2	43	10151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4484	False	NA	32	True	AATAAA	-20	NA	80139723	80141742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_80139887_80140407_80140723_80140834
ENSMUSG00000042419.9_35439151_35455500_1	chr17	-	1469	4	NNC	ENSMUSG00000042419.9	novel	1447	4	NA	NA	-732	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_3	32.4995726467629	322	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGAGTCTCCTCTGTTT	NA	False	NA	-1	True	NA	NA	NA	35455500	35439150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_35439953_35440112_35440335_35453927_35454208_35455335
ENSMUSG00000042426.7_113064182_113069763_1	chr13	+	790	5	ISM	ENSMUSG00000042426.7	ENSMUST00000224176.2	1272	8	194	8500	0	1052	5prime_fragment	FALSE	canonical	3	291	junction_2	20.0499376557634	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAATTTTTTAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	113064181	113069763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_113064508_113066160_113066235_113067375_113067490_113069040_113069171_113069617
ENSMUSG00000042426.7_113083719_113105966_1	chr13	+	2571	17	ISM	ENSMUSG00000042426.7	ENSMUST00000038574.7	4682	27	19731	0	14663	0	3prime_fragment	TRUE	canonical	3	222	junction_2	26.8071090151475	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTCCATCTCTGTGT	NA	False	NA	18	True	AATAAA	-18	NA	113083718	113105966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_113083909_113084745_113084890_113089336_113089514_113090207_113090349_113091681_113091827_113091933_113092052_113092915_113093001_113095446_113095536_113096652_113096782_113096856_113096933_113097594_113097820_113099267_113099405_113099796_113099891_113100980_113101275_113101748_113101881_113103069_113103167_113105668
ENSMUSG00000042447.14_8209334_8235603_1	chr6	+	2927	12	FSM	ENSMUSG00000042447.14	ENSMUST00000040017.8	3710	12	112	671	112	-665	multi-exon	FALSE	canonical	3	253	junction_5	31.0917065288484	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATGTGATGTTTGAGTGA	13	True	NA	14	True	AATAAA	-17	NA	8209333	8235603	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_8209412_8211579_8211639_8214765_8216100_8216371_8216471_8222460_8222716_8224554_8224725_8226843_8226910_8227968_8228128_8231160_8231314_8233049_8233255_8234231_8234362_8235384
ENSMUSG00000042447.14_8222549_8235603_1	chr6	+	1269	8	ISM	ENSMUSG00000042447.14	ENSMUST00000040017.8	3710	12	13327	671	-4086	-665	3prime_fragment	FALSE	canonical	3	253	junction_1	32.5964815930324	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATGTGATGTTTGAGTGA	5164	False	NA	14	True	AATAAA	-17	NA	8222548	8235603	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_8222716_8224554_8224725_8226843_8226910_8227968_8228128_8231160_8231314_8233049_8233255_8234231_8234362_8235384
ENSMUSG00000042472.12_84363892_84390498_1	chr12	+	2332	12	FSM	ENSMUSG00000042472.12	ENSMUST00000045931.12	2597	12	266	-1	0	1	multi-exon	FALSE	canonical	3	183	junction_3	18.7929123266993	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTTGGCTCTTGTTTTA	1849	False	NA	12	True	AATAAA	-17	NA	84363891	84390498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
ENSMUSG00000042502.11_126791197_126795172_1	chr7	-	2919	7	FSM	ENSMUSG00000042502.11	ENSMUST00000166791.8	3284	7	0	365	0	0	multi-exon	FALSE	canonical	3	356	junction_6	93.763295353542	934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTGTGGTAATTTAATAAA	5458	False	NA	-1	True	NA	NA	NA	126795172	126791196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794634_126795100
ENSMUSG00000042502.11_126792830_126795114_1	chr7	-	1695	6	ISM	ENSMUSG00000042502.11	ENSMUST00000035771.5	1309	7	-67	0	0	0	intron_retention	FALSE	canonical	3	578	junction_3	18.2274518241031	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCCTTTTGGCTTCAC	5516	False	NA	-4	True	AATAAA	-40	NA	126795114	126792829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532
ENSMUSG00000042502.11_126792830_126795114_2	chr7	-	1242	7	NIC	ENSMUSG00000042502.11	novel	2906	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_6	198.070413966571	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCCTTTTGGCTTCAC	5516	False	NA	-4	True	AATAAA	-40	NA	126795114	126792829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794634_126795086
ENSMUSG00000042502.11_126792830_126795114_3	chr7	-	1228	7	FSM	ENSMUSG00000042502.11	ENSMUST00000166791.8	3284	7	58	1998	0	0	multi-exon	FALSE	canonical	3	356	junction_6	93.763295353542	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCCTTTTGGCTTCAC	5516	False	NA	-4	True	AATAAA	-40	NA	126795114	126792829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794634_126795100
ENSMUSG00000042502.11_126792830_126795232_1	chr7	-	1346	7	FSM	ENSMUSG00000042502.11	ENSMUST00000166791.8	3284	7	-60	1998	-10	0	multi-exon	FALSE	canonical	3	356	junction_6	93.763295353542	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCCTTTTGGCTTCAC	5398	False	NA	-4	True	AATAAA	-40	NA	126795232	126792829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794634_126795100
ENSMUSG00000042505.7_6956007_7039141_1	chr6	+	486	2	NNC	ENSMUSG00000042505.7	novel	4323	2	NA	NA	0	-3838	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	180	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATAGTCTCTTATTTTTGG	-15	True	NA	NA	False	AATATA	-15	NA	6956006	7039141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_6956205_7038853
ENSMUSG00000042505.7_6956007_7039406_1	chr6	+	751	2	NNC	ENSMUSG00000042505.7	novel	4323	2	NA	NA	0	-3573	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	819	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATAATAATGGAAGATGTA	-15	True	NA	NA	False	AATAAA	-5	NA	6956006	7039406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_6956205_7038853
ENSMUSG00000042505.7_6956007_7039406_2	chr6	+	828	3	NNC	ENSMUSG00000042505.7	novel	966	3	NA	NA	0	-3573	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	720	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATAATAATGGAAGATGTA	-15	True	NA	NA	False	AATAAA	-5	NA	6956006	7039406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_6956205_6957003_6957081_7038853
ENSMUSG00000042505.7_6956007_7039406_3	chr6	+	863	3	NNC	ENSMUSG00000042505.7	novel	966	3	NA	NA	0	-3573	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6	104	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATAATAATGGAAGATGTA	-15	True	NA	NA	False	AATAAA	-5	NA	6956006	7039406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_6956205_6957003_6957116_7038853
ENSMUSG00000042505.7_6956007_7039657_1	chr6	+	1002	2	NNC	ENSMUSG00000042505.7	novel	4323	2	NA	NA	0	-3322	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1168	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATGTATGTTGGGTGA	-15	True	NA	6	True	AATAAA	-14	NA	6956006	7039657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_6956205_7038853
ENSMUSG00000042523.13_84161140_84171718_1	chr12	+	543	3	ISM	ENSMUSG00000042523.13	ENSMUST00000136159.2	403	6	-25	9040	0	-9040	5prime_fragment	FALSE	canonical	2	7	junction_1	4.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACAGCCTGGGAAGGAAA	9912	False	NA	NA	False	NA	NA	NA	84161139	84171718	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_84161174_84168056_84168096_84171248
ENSMUSG00000042523.13_84161140_84185249_1	chr12	+	685	8	FSM	ENSMUSG00000042523.13	ENSMUST00000123491.8	5727	8	0	5042	0	18	multi-exon	FALSE	canonical	2	7	junction_1	4.44007721940573	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTGTGGAGCAGAGTTC	9912	False	NA	NA	False	AATAGA	-29	NA	84161139	84185249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84161174_84168056_84168096_84171248_84171359_84173735_84173792_84178105_84178162_84182340_84182468_84183270_84183412_84185127
ENSMUSG00000042541.11_6558288_6578663_1	chr6	-	483	3	FSM	ENSMUSG00000042541.11	ENSMUST00000041111.10	1472	3	-5	994	0	-994	multi-exon	FALSE	canonical	3	3186	junction_2	110.5	37029	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTTGGTTCAGATGTCT	22	False	6578685	-12	True	AATAAA	-14	NA	6578663	6558287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_6558492_6560407_6560502_6578478
ENSMUSG00000042557.15_56983660_57035437_1	chr9	+	1064	2	NNC	ENSMUSG00000042557.15	novel	5206	22	NA	NA	0	-211	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	53	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGCTCTAGCTTCTTGT	NA	False	NA	21	True	ATTAAA	-25	NA	56983659	57035437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_56983760_57034473
ENSMUSG00000042569.14_60721505_60748972_1	chr11	+	1223	7	NNC	ENSMUSG00000042569.14	novel	3277	7	NA	NA	0	-277	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	97.7725535220505	1263	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAACCATGTACAGGTCT	NA	False	NA	34	True	AATAAA	-31	NA	60721504	60748972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_60721558_60734995_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
ENSMUSG00000042569.14_60721505_60748972_2	chr11	+	1257	7	NNC	ENSMUSG00000042569.14	novel	3277	7	NA	NA	0	-277	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	85.6536955160462	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAACCATGTACAGGTCT	NA	False	NA	34	True	AATAAA	-31	NA	60721504	60748972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_60721587_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
ENSMUSG00000042569.14_60721505_60748972_3	chr11	+	1075	6	NIC	ENSMUSG00000042569.14	novel	3277	7	NA	NA	0	-277	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	97.4851783606103	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAACCATGTACAGGTCT	NA	False	NA	34	True	AATAAA	-31	NA	60721504	60748972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_60721558_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60748543
ENSMUSG00000042569.14_60721505_60748972_4	chr11	+	1228	7	FSM	ENSMUSG00000042569.14	ENSMUST00000042281.14	1553	7	48	277	0	-277	multi-exon	FALSE	canonical	3	194	junction_1	30.3845721085919	1523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAACCATGTACAGGTCT	NA	False	NA	34	True	AATAAA	-31	NA	60721504	60748972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_60721558_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
ENSMUSG00000042570.15_79376080_79390930_1	chr10	-	2572	14	FSM	ENSMUSG00000042570.15	ENSMUST00000165028.8	2676	14	103	1	-5	0	multi-exon	FALSE	canonical	3	111	junction_13	38.1023225308973	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGTGTCTCATGGATTCC	NA	False	NA	-4	True	ATTAAA	-15	NA	79390930	79376079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385514_79386149_79386241_79390907
ENSMUSG00000042605.17_121949523_121953013_1	chr5	+	766	2	ISM	ENSMUSG00000042605.17	ENSMUST00000159928.2	1468	4	5881	-216	0	0	3prime_fragment	FALSE	canonical	3	133	junction_1	0	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCAGTTAGTGTGTGTTT	NA	False	NA	4	True	TTTAAA	-7	NA	121949522	121953013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_121949676_121952400
ENSMUSG00000042606.10_126461611_126464301_1	chr7	+	2148	6	NIC	ENSMUSG00000042606.10	novel	2766	7	NA	NA	0	211	intron_retention	FALSE	canonical	3	200	junction_2	32.121021154378	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTCCCAAACCGTCATGC	1943	False	NA	53	True	AATAAA	-27	NA	126461610	126464301	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_126461689_126461771_126462099_126462340_126463423_126463491_126463658_126463734_126463834_126463905
ENSMUSG00000042616.9_125952397_125982457_1	chr4	+	1443	10	FSM	ENSMUSG00000042616.9	ENSMUST00000035497.5	5013	10	39	3531	0	0	multi-exon	FALSE	canonical	3	15	junction_8	4.26296135405575	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCTTCCCCATTATTCTC	2402	False	NA	7	True	AATATA	-17	NA	125952396	125982457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_125952586_125967597_125967753_125970509_125970678_125971128_125971210_125976674_125976779_125977388_125977518_125978185_125978256_125980335_125980476_125981498_125981563_125982114
ENSMUSG00000042625.17_56869939_56872261_1	chr17	-	662	5	ISM	ENSMUSG00000042625.17	ENSMUST00000075510.12	3277	21	19324	0	-694	0	3prime_fragment	FALSE	canonical	3	191	junction_1	32.5883414736007	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCTGCTGCCAGGCATT	2179	False	NA	2	True	AATAAA	-31	NA	56872261	56869938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_56870244_56870361_56870432_56870511_56870625_56871503_56871635_56872218
ENSMUSG00000042626.14_89328935_89337322_1	chr3	+	3533	12	FSM	ENSMUSG00000042626.14	ENSMUST00000094378.10	2617	12	0	-916	0	0	multi-exon	FALSE	canonical	3	501	junction_1	37.6308735565373	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGCCTCTCAACTCCTC	NA	False	NA	20	True	ATTAAA	-17	NA	89328934	89337322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
ENSMUSG00000042642.14_89310389_89316206_1	chr3	-	1178	6	NNC	ENSMUSG00000042642.14	novel	2892	8	NA	NA	2882	-415	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_4	128.01468665743	123	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTGCCTGTTGCTCT	6708	False	NA	-15	True	AGTAAA	-18	NA	89316206	89310388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313230_89314715_89314864_89315728
ENSMUSG00000042642.14_89310389_89319170_1	chr3	-	1745	8	NIC	ENSMUSG00000042642.14	novel	2892	8	NA	NA	0	-415	combination_of_known_junctions	FALSE	canonical	3	35	junction_7	105.155666921542	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTGCCTGTTGCTCT	3744	False	NA	-15	True	AGTAAA	-18	NA	89319170	89310388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319124
ENSMUSG00000042642.14_89310389_89319170_2	chr3	-	2002	8	NIC	ENSMUSG00000042642.14	novel	2892	8	NA	NA	0	-415	combination_of_known_junctions	FALSE	canonical	2	9	junction_7	114.072300739129	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTGCCTGTTGCTCT	3744	False	NA	-15	True	AGTAAA	-18	NA	89319170	89310388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89318867
ENSMUSG00000042642.14_89310389_89319170_3	chr3	-	1817	8	FSM	ENSMUSG00000042642.14	ENSMUST00000107426.8	2238	8	6	415	0	-415	multi-exon	FALSE	canonical	3	53	junction_7	99.0019583397321	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTGCCTGTTGCTCT	3744	False	NA	-15	True	AGTAAA	-18	NA	89319170	89310388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319052
ENSMUSG00000042647.14_121736451_121736882_1	chr5	-	298	2	NNC	ENSMUSG00000042647.14	novel	3881	11	NA	NA	-840	-1483	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTCTACTTCCTATG	NA	False	NA	-1	True	NA	NA	NA	121736882	121736450	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_121736569_121736702
ENSMUSG00000042659.16_68391259_68398718_1	chr7	-	911	5	FSM	ENSMUSG00000042659.16	ENSMUST00000118110.3	1129	5	218	0	218	0	multi-exon	FALSE	canonical	3	754	junction_4	68.2289344779764	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGCCTTCACTGTTAAA	NA	False	NA	69	True	NA	NA	NA	68398718	68391258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_68391650_68392319_68392423_68394529_68394678_68394892_68394960_68398516
ENSMUSG00000042670.6_105734983_105795763_1	chr2	+	756	7	NNC	ENSMUSG00000042670.6	novel	955	7	NA	NA	0	-140	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	164.760853630008	1314	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTATTTATGTTTTAAAT	NA	False	NA	14	True	AATAAA	-15	NA	105734982	105795763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_105735076_105738668_105738775_105761063_105761198_105763609_105763699_105767336_105767464_105794583_105794636_105795608
ENSMUSG00000042670.6_105734983_105795763_2	chr2	+	592	5	NIC	ENSMUSG00000042670.6	novel	955	7	NA	NA	0	-140	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	181.801230743909	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTATTTATGTTTTAAAT	NA	False	NA	14	True	AATAAA	-15	NA	105734982	105795763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_105735076_105738668_105738775_105767336_105767464_105794524_105794636_105795608
ENSMUSG00000042670.6_105734983_105795763_3	chr2	+	681	6	NIC	ENSMUSG00000042670.6	novel	955	7	NA	NA	0	-140	combination_of_known_splicesites	FALSE	canonical	3	32	junction_2	170.067516004674	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTATTTATGTTTTAAAT	NA	False	NA	14	True	AATAAA	-15	NA	105734982	105795763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_105735076_105738668_105738775_105763609_105763699_105767336_105767464_105794524_105794636_105795608
ENSMUSG00000042670.6_105734983_105795763_4	chr2	+	815	7	FSM	ENSMUSG00000042670.6	ENSMUST00000037499.6	955	7	0	140	0	-140	multi-exon	FALSE	canonical	3	400	junction_1	38.970073988468	5214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTATTTATGTTTTAAAT	NA	False	NA	14	True	AATAAA	-15	NA	105734982	105795763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_105735076_105738668_105738775_105761063_105761198_105763609_105763699_105767336_105767464_105794524_105794636_105795608
ENSMUSG00000042682.11_29690265_29696797_1	chr14	+	856	5	FSM	ENSMUSG00000042682.11	ENSMUST00000112268.4	1678	5	0	822	0	0	multi-exon	FALSE	canonical	3	836	junction_3	72.5443829665674	6782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGGTTGGTTTTG	NA	False	NA	11	True	AATAAA	-22	NA	29690264	29696797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_29690494_29691982_29692074_29693744_29693829_29695317_29695405_29696432
ENSMUSG00000042682.11_29690393_29696797_1	chr14	+	728	5	FSM	ENSMUSG00000042682.11	ENSMUST00000112268.4	1678	5	128	822	0	0	multi-exon	FALSE	canonical	3	836	junction_3	72.5443829665674	5691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGGTTGGTTTTG	NA	False	NA	11	True	AATAAA	-22	NA	29690392	29696797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_29690494_29691982_29692074_29693744_29693829_29695317_29695405_29696432
ENSMUSG00000042682.11_29690393_29696797_2	chr14	+	723	5	NNC	ENSMUSG00000042682.11	novel	799	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_1	410.83961286614	688	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGGTTGGTTTTG	NA	False	NA	11	True	AATAAA	-22	NA	29690392	29696797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_29690494_29691987_29692074_29693744_29693829_29695317_29695405_29696432
ENSMUSG00000042682.11_29690393_29696797_3	chr14	+	720	5	NNC	ENSMUSG00000042682.11	novel	799	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_3	432.618408646696	987	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGGTTGGTTTTG	NA	False	NA	11	True	AATAAA	-22	NA	29690392	29696797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_29690494_29691982_29692074_29693744_29693829_29695325_29695405_29696432
ENSMUSG00000042682.11_29690393_29696966_1	chr14	+	897	5	FSM	ENSMUSG00000042682.11	ENSMUST00000112268.4	1678	5	128	653	0	169	multi-exon	FALSE	canonical	3	836	junction_3	72.5443829665674	8655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCAGTAGTACATGTAAAT	NA	False	NA	26	True	AATAAA	-15	NA	29690392	29696966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_29690494_29691982_29692074_29693744_29693829_29695317_29695405_29696432
ENSMUSG00000042694.18_47509269_47525537_1	chr19	-	1994	5	FSM	ENSMUSG00000042694.18	ENSMUST00000182431.8	558	5	-134	-1302	-4	1302	multi-exon	TRUE	canonical	1	2	junction_1	57.4429064376099	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTGGATGTTACATTGA	NA	False	NA	NA	False	AATAAA	-15	NA	47525537	47509268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_47510637_47513125_47513195_47517075_47517172_47524634_47524811_47525252
ENSMUSG00000042699.12_153353835_153363397_1	chr1	-	728	6	ISM	ENSMUSG00000042699.12	ENSMUST00000188345.2	2346	19	0	13747	0	188	5prime_fragment	FALSE	canonical	3	83	junction_2	16.7403703662733	386	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCCAAGGAGAATATAAGT	NA	False	NA	NA	False	AAAAAG	-5	NA	153363397	153353834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
ENSMUSG00000042700.17_82493498_82497048_1	chr12	+	664	3	ISM	ENSMUSG00000042700.17	ENSMUST00000053969.7	7488	21	135375	1508	6177	0	3prime_fragment	FALSE	canonical	3	131	junction_1	16.5	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAATGTCTTTATTTTTT	NA	False	NA	21	True	NA	NA	NA	82493497	82497048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_82493706_82496083_82496166_82496674
ENSMUSG00000042705.10_47091932_47221062_1	chr18	+	1450	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234701.2	528	6	-15	-907	0	0	multi-exon	FALSE	canonical	3	144	junction_2	502.986441169143	1735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCGTACAATGTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	47091931	47221062	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_47091996_47093482_47093574_47100806_47100963_47123545_47123657_47219318_47219379_47220094
ENSMUSG00000042705.10_47091932_47221062_2	chr18	+	1405	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234280.2	600	6	-10	-795	0	0	multi-exon	FALSE	canonical	3	187	junction_3	477.712298355401	874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCGTACAATGTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	47091931	47221062	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47123545_47123657_47219318_47219379_47220094
ENSMUSG00000042709.16_60291452_60307861_1	chr11	-	1646	9	NIC	ENSMUSG00000042709.16	novel	719	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_8	146.351460532514	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGGTCTAAGCAGTT	NA	False	NA	0	True	NA	NA	NA	60307861	60291451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296704_60298119_60298218_60300085_60300232_60300411_60300457_60302492_60302556_60307811
ENSMUSG00000042709.16_60291452_60307861_3	chr11	-	1818	8	FSM	ENSMUSG00000042709.16	ENSMUST00000145532.9	949	8	-17	-852	0	0	multi-exon	FALSE	canonical	3	57	junction_4	104.174892192242	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGGTCTAAGCAGTT	NA	False	NA	0	True	NA	NA	NA	60307861	60291451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296704_60298119_60298218_60300085_60300232_60300411_60300457_60307576
ENSMUSG00000042709.16_60291868_60307861_1	chr11	-	1381	8	FSM	ENSMUSG00000042709.16	ENSMUST00000108721.9	1813	8	16	416	0	-404	multi-exon	FALSE	canonical	3	286	junction_1	36.2902134443535	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATCAAGCCTCATTTTTA	NA	False	NA	NA	False	ATTAAA	-20	NA	60307861	60291867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60307576
ENSMUSG00000042712.11_135145828_135147647_1	chrX	+	778	3	FSM	ENSMUSG00000042712.11	ENSMUST00000048687.11	1019	3	0	241	0	-241	multi-exon	FALSE	canonical	3	2732	junction_2	36	2894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAGAATAACAAAA	NA	False	NA	66	True	NA	NA	NA	135145827	135147647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_135145977_135146449_135146516_135147084
ENSMUSG00000042719.18_121573084_121576883_1	chr5	+	430	5	ISM	ENSMUSG00000042719.18	ENSMUST00000173895.8	2556	21	37027	0	-4397	0	3prime_fragment	FALSE	canonical	3	374	junction_1	48.339295609266	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACGAGCATCATCATGGT	5369	False	NA	NA	False	ATTAAA	-29	NA	121573083	121576883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790
ENSMUSG00000042719.18_121573084_121578182_1	chr5	+	887	7	ISM	ENSMUSG00000042719.18	ENSMUST00000151458.4	2910	24	37016	-188	-4397	188	3prime_fragment	FALSE	canonical	3	374	junction_1	39.668067202166	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAATTATTGTATATAAAC	5369	False	NA	9	True	ATTAAA	-14	NA	121573083	121578182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890
ENSMUSG00000042729.12_8713191_8717988_1	chr19	+	1298	10	NIC	ENSMUSG00000042729.12	novel	1204	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	1012	junction_7	81.959038248489	4380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGACCTTTTGTGATGG	963	False	NA	28	True	AATAAA	-21	NA	8713190	8717988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_8713270_8713350_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
ENSMUSG00000042729.12_8713191_8717988_2	chr19	+	461	4	NNC	ENSMUSG00000042729.12	novel	1078	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	527.990530218109	157	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGACCTTTTGTGATGG	963	False	NA	28	True	AATAAA	-21	NA	8713190	8717988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8713270_8713350_8713458_8713539_8713592_8717765
ENSMUSG00000042737.10_89173859_89174253_1	chr3	+	273	2	FSM	ENSMUSG00000042737.10	ENSMUST00000040824.2	404	2	0	131	0	-131	multi-exon	FALSE	canonical	3	539	junction_1	0	1141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGAGCTGCAGAGCCAGAT	6777	False	NA	NA	False	NA	NA	NA	89173858	89174253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89173914_89174035
ENSMUSG00000042747.13_89153741_89157030_1	chr3	+	498	4	NNC	ENSMUSG00000042747.13	novel	1172	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	787.790722350944	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTCTGTGAACTGTGA	7591	False	NA	21	True	AATAAA	-15	NA	89153740	89157030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_89153823_89154084_89154240_89154371_89154436_89156833
ENSMUSG00000042747.13_89153741_89157030_2	chr3	+	653	4	NIC	ENSMUSG00000042747.13	novel	1172	5	NA	NA	0	1	intron_retention	FALSE	canonical	3	1428	junction_1	193.256881435622	1281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTCTGTGAACTGTGA	7591	False	NA	21	True	AATAAA	-15	NA	89153740	89157030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_89153823_89154084_89154436_89156380_89156448_89156877
ENSMUSG00000042747.13_89153741_89157030_3	chr3	+	510	5	NNC	ENSMUSG00000042747.13	novel	1172	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	747.489799261502	16267	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTCTGTGAACTGTGA	7591	False	NA	21	True	AATAAA	-15	NA	89153740	89157030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_89153823_89154084_89154240_89154371_89154436_89156380_89156437_89156877
ENSMUSG00000042747.13_89153741_89157030_4	chr3	+	506	5	NNC	ENSMUSG00000042747.13	novel	1172	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	753.922865749541	16235	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTCTGTGAACTGTGA	7591	False	NA	21	True	AATAAA	-15	NA	89153740	89157030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_89153823_89154084_89154225_89154371_89154436_89156380_89156448_89156877
ENSMUSG00000042747.13_89153741_89157213_1	chr3	+	704	5	FSM	ENSMUSG00000042747.13	ENSMUST00000040888.12	1172	5	468	0	0	0	multi-exon	FALSE	canonical	3	1428	junction_1	178.055293378209	21564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACCTAACTGGTGTGCGT	7591	False	NA	NA	False	AATACA	-17	NA	89153740	89157213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89153823_89154084_89154240_89154371_89154436_89156380_89156448_89156877
ENSMUSG00000042750.8_134967313_134968874_1	chrX	-	792	3	FSM	ENSMUSG00000042750.8	ENSMUST00000049130.8	903	3	111	0	111	0	multi-exon	FALSE	canonical	3	901	junction_2	34	11487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGTAGTTCTTTAAAGG	4267	False	NA	0	True	AATAAA	-18	NA	134968874	134967312	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_134967957_134968348_134968422_134968799
ENSMUSG00000042751.15_152966096_152970210_1	chr1	+	523	3	NIC	ENSMUSG00000042751.15	novel	4626	11	NA	NA	-3130	-133	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	1	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGTGTGGCTTGTTTTCCT	NA	False	NA	8	True	AAGAAA	-20	NA	152966095	152970210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_152966288_152969782_152969860_152969956
ENSMUSG00000042751.15_152969226_152970210_1	chr1	+	463	3	NNC	ENSMUSG00000042751.15	novel	539	3	NA	NA	0	-133	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	23.5	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGTGTGGCTTGTTTTCCT	NA	False	NA	8	True	AAGAAA	-20	NA	152969225	152970210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_152969358_152969782_152969860_152969956
ENSMUSG00000042751.15_152969226_152970210_2	chr1	+	406	3	FSM	ENSMUSG00000042751.15	ENSMUST00000190960.2	539	3	0	133	0	-133	multi-exon	FALSE	canonical	3	57	junction_2	72	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGTGTGGCTTGTTTTCCT	NA	False	NA	8	True	AAGAAA	-20	NA	152969225	152970210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_152969301_152969782_152969860_152969956
ENSMUSG00000042751.15_152969226_152973865_1	chr1	+	533	3	NNC	ENSMUSG00000042751.15	novel	539	3	NA	NA	0	3522	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	79.5	521	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGCGTCCCACATTCTT	NA	False	NA	30	True	NA	NA	NA	152969225	152973865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_152969301_152969782_152969860_152973484
ENSMUSG00000042751.15_152969226_152991598_1	chr1	+	607	5	NIC	ENSMUSG00000042751.15	novel	539	3	NA	NA	0	-3312	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	18.7799760383234	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGGACAAACTTTCCTC	NA	False	NA	NA	False	NA	NA	NA	152969225	152991598	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_152969301_152969782_152969860_152987887_152987990_152988125_152988194_152991313
ENSMUSG00000042751.15_152969226_152991819_1	chr1	+	828	5	NIC	ENSMUSG00000042751.15	novel	539	3	NA	NA	0	-3091	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	18.7799760383234	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGTGAGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	152969225	152991819	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_152969301_152969782_152969860_152987887_152987990_152988125_152988194_152991313
ENSMUSG00000042751.15_152969566_152970210_1	chr1	+	373	3	NNC	ENSMUSG00000042751.15	novel	4638	12	NA	NA	340	-133	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	25	205	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGTGTGGCTTGTTTTCCT	NA	False	NA	8	True	AAGAAA	-20	NA	152969565	152970210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_152969608_152969782_152969860_152969956
ENSMUSG00000042757.17_103629434_103638999_1	chr9	-	779	2	FSM	ENSMUSG00000042757.17	ENSMUST00000186455.3	1591	2	-10	822	-6	-822	multi-exon	FALSE	canonical	3	33	junction_1	0	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGTTCAAGAC	NA	False	NA	NA	False	NA	NA	NA	103638999	103629433	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_103630167_103638953
ENSMUSG00000042808.11_76839107_76842167_1	chr12	-	908	2	FSM	ENSMUSG00000042808.11	ENSMUST00000082431.6	1010	2	106	-4	104	0	multi-exon	FALSE	canonical	3	177	junction_1	0	1213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTCTCTGTCTTCCTTT	NA	False	NA	-1	True	AATAAA	-20	NA	76842167	76839106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_76839775_76841927
ENSMUSG00000042831.14_30008202_30013729_1	chr7	+	880	7	FSM	ENSMUSG00000042831.14	ENSMUST00000136887.8	730	7	0	-150	0	0	multi-exon	FALSE	canonical	1	2	junction_2	178.123942491988	857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	9	True	AATAAA	-16	NA	30008201	30013729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30008260_30008905_30008985_30009452_30009480_30011264_30011326_30011661_30011814_30012015_30012133_30013343
ENSMUSG00000042831.14_30008202_30013729_2	chr7	+	1119	6	NNC	ENSMUSG00000042831.14	novel	982	7	NA	NA	0	0	intron_retention	FALSE	canonical	2	10	junction_5	175.104997073185	850	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	9	True	AATAAA	-16	NA	30008201	30013729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30012133_30013348
ENSMUSG00000042831.14_30008202_30013729_3	chr7	+	805	6	NIC	ENSMUSG00000042831.14	novel	982	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	89	junction_5	143.61615508013	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	9	True	AATAAA	-16	NA	30008201	30013729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30013343
ENSMUSG00000042831.14_30008202_30013729_4	chr7	+	1007	7	NIC	ENSMUSG00000042831.14	novel	982	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	165.266451526013	1641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	9	True	AATAAA	-16	NA	30008201	30013729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30011930_30012133_30013343
ENSMUSG00000042831.14_30008202_30013729_5	chr7	+	1022	7	NIC	ENSMUSG00000042831.14	novel	982	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	3	junction_1	178.615664362215	1563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	9	True	AATAAA	-16	NA	30008201	30013729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_30008360_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30012015_30012133_30013343
ENSMUSG00000042831.14_30008202_30013729_6	chr7	+	1045	5	NIC	ENSMUSG00000042831.14	novel	982	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	12	junction_1	201.561870154055	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	9	True	AATAAA	-16	NA	30008201	30013729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_30008260_30009410_30009480_30011264_30011326_30011661_30012133_30013343
ENSMUSG00000042870.16_75760333_75796211_1	chr8	+	1729	15	FSM	ENSMUSG00000042870.16	ENSMUST00000165630.3	2267	15	0	538	0	0	multi-exon	FALSE	canonical	3	248	junction_1	29.4884965464743	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCCTGCCTTCTTCCCA	NA	False	NA	NA	False	NA	NA	NA	75760332	75796211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_75760456_75774620_75774706_75776817_75776897_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75787060_75787182_75791021_75791098_75794149_75794210_75795723_75795764_75795877
ENSMUSG00000042901.11_183072407_183078552_1	chr1	+	847	6	Genic_Genomic	ENSMUSG00000042901.11	novel	1932	1	NA	NA	-5727	-1513	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTAGAGCGGCCGGAAGT	NA	False	NA	NA	False	NA	NA	NA	183072406	183078552	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_183072739_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078446
ENSMUSG00000042992.16_134618052_134688150_1	chr6	+	1615	4	FSM	ENSMUSG00000042992.16	ENSMUST00000062755.10	1764	4	149	0	128	0	multi-exon	FALSE	canonical	3	52	junction_1	6.37704215656966	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTGATCTGATTCTAAT	NA	False	NA	31	True	ATTAAA	-32	NA	134618051	134688150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_134618221_134621291_134621436_134662926_134663085_134687006
ENSMUSG00000043004.14_19925544_19985326_1	chr14	-	695	3	NNC	ENSMUSG00000043004.14	novel	458	3	NA	NA	41435	179	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	66.5	667	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAGATATGGCTGACATT	NA	False	NA	-27	True	AATAAA	-21	NA	19985326	19925543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_19926004_19941353_19941470_19985207
ENSMUSG00000043051.18_125815087_125817734_1	chr8	+	724	2	ISM	ENSMUSG00000043051.18	ENSMUST00000126111.2	804	3	361	11883	361	0	5prime_fragment	FALSE	canonical	3	20	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	125815086	125817734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_125815188_125817111
ENSMUSG00000043059.17_31356325_31359286_1	chr5	-	2115	3	FSM	ENSMUSG00000043059.17	ENSMUST00000031562.11	2213	3	100	-2	100	0	multi-exon	FALSE	canonical	3	184	junction_2	7	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGTCTCTGCTGAATTG	NA	False	NA	-17	True	AATAAA	-16	NA	31359286	31356324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31357492_31357578_31358167_31358926
ENSMUSG00000043061.11_30634425_30641218_1	chr12	+	2604	6	NNC	ENSMUSG00000043061.11	novel	2971	5	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	70.6784266944306	308	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTGTGCTTTCGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	30634424	30641218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650_30640433_30640803
ENSMUSG00000043061.11_30634425_30641218_2	chr12	+	2954	6	NNC	ENSMUSG00000043061.11	novel	2971	5	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	3	92	junction_5	34.3941855551196	392	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTGTGCTTTCGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	30634424	30641218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650_30640574_30640594
ENSMUSG00000043061.11_30640338_30641218_1	chr12	+	509	2	NNC	ENSMUSG00000043061.11	novel	2971	5	NA	NA	3425	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTGTGCTTTCGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	30640337	30641218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_30640426_30640797
ENSMUSG00000043061.11_30640398_30641218_1	chr12	+	800	2	NNC	ENSMUSG00000043061.11	novel	2971	5	NA	NA	3485	4	at_least_one_novel_splicesite	FALSE	non_canonical	3	92	junction_1	0	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTGTGCTTTCGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	30640397	30641218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_30640574_30640594
ENSMUSG00000043065.13_44167777_44207600_1	chr16	+	3074	18	FSM	ENSMUSG00000043065.13	ENSMUST00000050897.7	4627	18	293	1260	0	94	multi-exon	FALSE	canonical	0	0	junction_1	35.5942143737688	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGATACTTTTTTTTTCTA	6401	False	NA	18	True	AATAAA	-23	NA	44167776	44207600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_44167870_44175802_44175899_44176507_44176556_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
ENSMUSG00000043085.15_141341544_141345350_1	chr4	-	1447	6	FSM	ENSMUSG00000043085.15	ENSMUST00000143154.8	2898	6	594	857	-58	0	multi-exon	FALSE	canonical	3	10	junction_2	37.2526509123847	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCGTTGAGGATCACAGT	NA	False	NA	-4	True	AATAAA	-16	NA	141345350	141341543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_141342018_141342255_141342422_141343514_141343933_141344605_141344781_141344950_141345024_141345209
ENSMUSG00000043085.15_141341544_141345350_2	chr4	-	1472	6	FSM	ENSMUSG00000043085.15	ENSMUST00000053263.9	1671	6	199	0	-58	0	multi-exon	FALSE	canonical	3	57	junction_2	22.4535075210979	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCGTTGAGGATCACAGT	NA	False	NA	-4	True	AATAAA	-16	NA	141345350	141341543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_141342018_141342255_141342447_141343514_141343933_141344605_141344781_141344950_141345024_141345209
ENSMUSG00000043090.19_70217409_70227547_1	chr8	-	2315	4	FSM	ENSMUSG00000043090.19	ENSMUST00000137573.2	3245	4	14	916	14	-916	multi-exon	FALSE	canonical	3	29	junction_1	2.44948974278318	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACTTGGGTGGAATAATT	6883	False	NA	NA	False	NA	NA	NA	70227547	70217408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70219428_70220282_70220344_70221770_70221898_70227439
ENSMUSG00000043091.10_98928202_98935847_1	chr15	+	1408	4	FSM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	430	144	0	-144	multi-exon	FALSE	canonical	3	774	junction_1	4660.1984459415	3316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGATAGTGCTGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	98928201	98935847	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915
ENSMUSG00000043162.8_57666016_57669063_1	chr6	-	1118	2	FSM	ENSMUSG00000043162.8	ENSMUST00000053386.6	3573	2	0	2455	0	-2455	multi-exon	FALSE	canonical	3	182	junction_1	0	1464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGTTTGCAGTGGTGGA	NA	False	NA	NA	False	AATAAA	-27	NA	57669063	57666015	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_57666864_57668793
ENSMUSG00000043162.8_57666418_57669063_1	chr6	-	716	2	FSM	ENSMUSG00000043162.8	ENSMUST00000053386.6	3573	2	0	2857	0	-2857	multi-exon	FALSE	canonical	3	182	junction_1	0	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCATAGCCGGGACAGCA	NA	False	NA	NA	False	NA	NA	NA	57669063	57666417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_57666864_57668793
ENSMUSG00000043190.15_76150886_76166681_1	chr13	-	1008	4	NNC	ENSMUSG00000043190.15	novel	2807	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_3	34.4125300177453	162	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAGTAATTTTGTTTC	NA	False	NA	-9	True	NA	NA	NA	76166681	76150885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_76151208_76156101_76156137_76156229_76156406_76166206
ENSMUSG00000043190.15_76150886_76166681_2	chr13	-	1575	4	FSM	ENSMUSG00000043190.15	ENSMUST00000050997.2	2807	4	0	1232	0	0	multi-exon	FALSE	canonical	3	34	junction_3	20.2703943940144	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAGTAATTTTGTTTC	NA	False	NA	-9	True	NA	NA	NA	76166681	76150885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76165639
ENSMUSG00000043190.15_76150886_76166789_1	chr13	-	1683	4	FSM	ENSMUSG00000043190.15	ENSMUST00000050997.2	2807	4	-108	1232	0	0	multi-exon	FALSE	canonical	3	34	junction_3	20.2703943940144	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAGTAATTTTGTTTC	NA	False	NA	-9	True	NA	NA	NA	76166789	76150885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76165639
ENSMUSG00000043207.11_120916434_120955257_1	chr4	-	3248	10	FSM	ENSMUSG00000043207.11	ENSMUST00000058754.9	3429	10	181	0	181	0	multi-exon	FALSE	canonical	3	242	junction_3	24.0005143977796	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCCTGGTGTTGGGTTTGA	NA	False	NA	-1	True	ATTAAA	-20	NA	120955257	120916433	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017_120940171_120940505_120940623_120944505_120944593_120952748_120952896_120955073
ENSMUSG00000043207.11_120918067_120955257_1	chr4	-	1615	10	FSM	ENSMUSG00000043207.11	ENSMUST00000058754.9	3429	10	181	1633	181	-1633	multi-exon	FALSE	canonical	3	242	junction_3	24.0005143977796	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACTATCTCATTTCAAAA	NA	False	NA	-23	True	CATAAA	-19	NA	120955257	120918066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017_120940171_120940505_120940623_120944505_120944593_120952748_120952896_120955073
ENSMUSG00000043207.11_120918067_120955438_1	chr4	-	1796	10	FSM	ENSMUSG00000043207.11	ENSMUST00000058754.9	3429	10	0	1633	0	-1633	multi-exon	FALSE	canonical	3	242	junction_3	24.0005143977796	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACTATCTCATTTCAAAA	NA	False	NA	-23	True	CATAAA	-19	NA	120955438	120918066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017_120940171_120940505_120940623_120944505_120944593_120952748_120952896_120955073
ENSMUSG00000043251.7_106021751_106022707_1	chr8	-	317	3	ISM	ENSMUSG00000043251.7	ENSMUST00000212777.2	2161	13	-135	5193	0	133	5prime_fragment	FALSE	canonical	1	4	junction_1	1.5	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGCAGGGAACTCGTGA	NA	False	NA	NA	False	NA	NA	NA	106022707	106021750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_106021817_106022257_106022339_106022537
ENSMUSG00000043257.16_133388736_133399958_1	chr4	-	1819	3	FSM	ENSMUSG00000043257.16	ENSMUST00000067902.13	990	3	0	-829	0	829	multi-exon	FALSE	canonical	3	52	junction_1	36	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGGGTCTGAATCTTGG	NA	False	NA	-12	True	NA	NA	NA	133399958	133388735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_133390103_133397048_133397172_133399629
ENSMUSG00000043257.16_133389565_133399958_2	chr4	-	2112	4	FSM	ENSMUSG00000043257.16	ENSMUST00000062118.11	3979	4	0	1867	0	0	multi-exon	FALSE	canonical	3	62	junction_1	27.7248384425711	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTCTGTCTTCTTGTTTT	NA	False	NA	-2	True	NA	NA	NA	133399958	133389564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_133390103_133391968_133393091_133397048_133397172_133399629
ENSMUSG00000043284.13_60755278_60769613_1	chr11	-	972	2	FSM	ENSMUSG00000043284.13	ENSMUST00000062677.12	1457	2	485	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	0	5240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGTTCTCTTTTCTGCC	7834	False	NA	-5	True	ATTAAA	-17	NA	60769613	60755277	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_60756175_60769538
ENSMUSG00000043301.17_94544922_94554300_1	chr16	-	916	5	NNC	ENSMUSG00000043301.17	novel	2362	5	NA	NA	103231	4573	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	142	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGAAGCTGGCTGTGGG	NA	False	NA	NA	False	NA	NA	NA	94554300	94544921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_94545201_94549749_94549952_94553485_94553564_94553805_94553999_94554136
ENSMUSG00000043301.17_94656128_94668288_1	chr16	-	326	3	NNC	ENSMUSG00000043301.17	novel	631	4	NA	NA	-10749	11328	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	547	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCCTTCTCTCTACCTTC	NA	False	NA	NA	False	NA	NA	NA	94668288	94656127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_94656240_94667462_94667539_94668150
ENSMUSG00000043333.13_123703707_123723991_1	chr4	+	1414	7	FSM	ENSMUSG00000043333.13	ENSMUST00000106204.2	1120	7	0	-294	0	294	multi-exon	FALSE	canonical	3	17	junction_1	3.97562014729219	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGCTGGACTCTTGCTT	NA	False	NA	NA	False	AATAAA	-16	NA	123703706	123723991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_123703970_123708035_123708185_123711656_123711770_123716549_123716651_123718653_123718715_123720630_123720693_123723326
ENSMUSG00000043384.16_134643484_134662765_1	chrX	+	890	6	NIC	ENSMUSG00000043384.16	novel	5640	10	NA	NA	0	26	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	15.9549365401433	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATGCCAACCACAGTTTC	NA	False	NA	NA	False	TTTAAA	-43	NA	134643483	134662765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_134643728_134644190_134644272_134645247_134645325_134649404_134649532_134652693_134652767_134662477
ENSMUSG00000043410.17_107064774_107074127_1	chr5	-	1212	6	NIC	ENSMUSG00000043410.17	novel	1440	10	NA	NA	-3	-14837	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	4.22374241638858	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTAGTTAGCCGTAAGTC	NA	False	NA	NA	False	AATAAA	-16	NA	107074127	107064773	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_107065494_107066242_107066356_107068828_107068943_107070678_107070777_107072696_107072799_107074062
ENSMUSG00000043411.16_137371652_137383654_1	chr4	+	582	5	ISM	ENSMUSG00000043411.16	ENSMUST00000152985.2	3392	11	19178	2194	0	12	3prime_fragment	FALSE	canonical	3	1393	junction_1	58.925800800668	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACGTGTTTCAGATTTTCT	NA	False	NA	20	True	AATAAA	-32	NA	137371651	137383654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
ENSMUSG00000043419.12_69231635_69233467_1	chr11	+	1733	2	FSM	ENSMUSG00000043419.12	ENSMUST00000129321.2	2081	2	348	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	265	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGAAAGACTGTTATTG	NA	False	NA	10	True	AATAAA	-19	NA	69231634	69233467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69231885_69231984
ENSMUSG00000043510.13_110976947_110987643_1	chr5	-	798	6	NIC	ENSMUSG00000043510.13	novel	804	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_3	141.291754890369	2325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGCTTCTGCTAATTG	NA	False	NA	-8	True	AATAAA	-13	NA	110987643	110976946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_110977078_110978801_110978850_110982520_110982666_110983840_110983936_110984172_110984270_110987361
ENSMUSG00000043510.13_110976947_110987643_2	chr5	-	703	5	NIC	ENSMUSG00000043510.13	novel	804	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	152.686566206723	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGCTTCTGCTAATTG	NA	False	NA	-8	True	AATAAA	-13	NA	110987643	110976946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_110977078_110978801_110978850_110982520_110982666_110984172_110984270_110987361
ENSMUSG00000043510.13_110976947_110987643_3	chr5	-	648	5	NIC	ENSMUSG00000043510.13	novel	804	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	167.865087198023	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGCTTCTGCTAATTG	NA	False	NA	-8	True	AATAAA	-13	NA	110987643	110976946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_110977078_110978801_110978850_110983845_110983936_110984172_110984270_110987361
ENSMUSG00000043510.13_110983718_110987643_1	chr5	-	597	3	ISM	ENSMUSG00000043510.13	ENSMUST00000056937.12	804	6	0	6782	0	-6771	5prime_fragment	FALSE	canonical	3	372	junction_2	33.5	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGTTCTTTGTAAATCC	NA	False	NA	NA	False	TTTAAA	-18	NA	110987643	110983717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_110983936_110984172_110984270_110987361
ENSMUSG00000043542.13_7568546_7582029_1	chr3	+	556	2	ISM	ENSMUSG00000043542.13	ENSMUST00000193010.2	1420	8	0	35106	0	-34532	5prime_fragment	FALSE	canonical	3	164	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACATTTAAAATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	7568545	7582029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_7568588_7581515
ENSMUSG00000043542.13_7568546_7616816_1	chr3	+	1209	9	FSM	ENSMUSG00000043542.13	ENSMUST00000051064.9	3292	9	3	2080	0	255	multi-exon	FALSE	canonical	3	121	junction_7	36.9256008752735	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGTCATTCAAGGAAC	NA	False	NA	NA	False	NA	NA	NA	7568545	7616816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_7568588_7581515_7581593_7583423_7583541_7589185_7589328_7591328_7591478_7593089_7593190_7593644_7593745_7604135_7604244_7616442
ENSMUSG00000043542.13_7568546_7617149_1	chr3	+	1542	9	FSM	ENSMUSG00000043542.13	ENSMUST00000051064.9	3292	9	3	1747	0	14	multi-exon	FALSE	canonical	3	121	junction_7	36.9256008752735	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGAAAAGGAAGACCTGAG	NA	False	NA	NA	False	NA	NA	NA	7568545	7617149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_7568588_7581515_7581593_7583423_7583541_7589185_7589328_7591328_7591478_7593089_7593190_7593644_7593745_7604135_7604244_7616442
ENSMUSG00000043602.6_70655287_70663754_1	chr11	+	1809	2	FSM	ENSMUSG00000043602.6	ENSMUST00000060444.6	2061	2	252	0	252	0	multi-exon	FALSE	canonical	3	29	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCTCTGGCCTTTCCTT	122	False	NA	18	True	ATTAAA	-26	NA	70655286	70663754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70655376_70662034
ENSMUSG00000043623.8_60187331_60215101_1	chr19	+	1277	6	NIC	ENSMUSG00000043623.8	novel	1343	2	NA	NA	-27435	-1009	intron_retention	FALSE	non_canonical	0	0	junction_1	0	129	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTTAGAACCCCGCCAAC	NA	False	NA	NA	False	NA	NA	NA	60187330	60215101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60214741
ENSMUSG00000043623.8_60187331_60215113_1	chr19	+	1258	5	NIC	ENSMUSG00000043623.8	novel	1343	2	NA	NA	-27435	-997	intron_retention	FALSE	non_canonical	0	0	junction_1	0	125	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCAACATCGTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	60187330	60215113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60214741
ENSMUSG00000043623.8_60187331_60215113_2	chr19	+	1294	8	Genic_Genomic	ENSMUSG00000043623.8	novel	1343	2	NA	NA	-27435	-997	multi-exon	FALSE	non_canonical	0	0	junction_1	0	254	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCAACATCGTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	60187330	60215113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr19_+_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60215075
ENSMUSG00000043623.8_60187331_60215113_3	chr19	+	1289	6	NIC	ENSMUSG00000043623.8	novel	1343	2	NA	NA	-27435	-997	intron_retention	FALSE	non_canonical	0	0	junction_1	0	128	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCAACATCGTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	60187330	60215113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60214741
ENSMUSG00000043623.8_60187331_60215113_4	chr19	+	1540	7	NIC	ENSMUSG00000043623.8	novel	1343	2	NA	NA	-27435	-997	intron_retention	FALSE	non_canonical	0	0	junction_1	0	203	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCAACATCGTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	60187330	60215113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60214741
ENSMUSG00000043623.8_60187331_60215113_6	chr19	+	1663	9	NIC	ENSMUSG00000043623.8	novel	1343	2	NA	NA	-27435	-997	intron_retention	FALSE	non_canonical	0	0	junction_1	0	462	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCAACATCGTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	60187330	60215113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60213296_60213332_60214741
ENSMUSG00000043629.13_52964055_52992003_1	chr1	-	1064	2	NNC	ENSMUSG00000043629.13	novel	3641	2	NA	NA	0	287	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1235	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAACAACATAAAACA	680	False	NA	NA	False	TTTAAA	-36	NA	52992003	52964054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_52964894_52991778
ENSMUSG00000043629.13_52964055_52992003_2	chr1	-	1069	2	FSM	ENSMUSG00000043629.13	ENSMUST00000050567.11	3641	2	0	2572	0	287	multi-exon	FALSE	canonical	3	220	junction_1	0	1424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAACAACATAAAACA	680	False	NA	NA	False	TTTAAA	-36	NA	52992003	52964054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_52964894_52991773
ENSMUSG00000043629.13_52964055_52992345_1	chr1	-	1411	2	FSM	ENSMUSG00000043629.13	ENSMUST00000050567.11	3641	2	-342	2572	164	287	multi-exon	FALSE	canonical	3	220	junction_1	0	1671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAACAACATAAAACA	338	False	NA	NA	False	TTTAAA	-36	NA	52992345	52964054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_52964894_52991773
ENSMUSG00000043629.13_52964055_52992509_1	chr1	-	993	2	FSM	ENSMUSG00000043629.13	ENSMUST00000114492.8	3565	2	0	2572	0	287	multi-exon	FALSE	canonical	3	11	junction_1	0	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAACAACATAAAACA	174	False	NA	NA	False	TTTAAA	-36	NA	52992509	52964054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_52964894_52992355
ENSMUSG00000043629.13_52964055_52992781_1	chr1	-	920	2	NNC	ENSMUSG00000043629.13	novel	3641	2	NA	NA	-272	287	at_least_one_novel_splicesite	TRUE	canonical	3	24	junction_1	0	187	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAACAACATAAAACA	NA	False	NA	NA	False	TTTAAA	-36	NA	52992781	52964054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_52964894_52992700
ENSMUSG00000043629.13_52964347_52992003_1	chr1	-	777	2	FSM	ENSMUSG00000043629.13	ENSMUST00000050567.11	3641	2	0	2864	0	0	multi-exon	FALSE	canonical	3	220	junction_1	0	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCATGTCTATGATATTAA	680	False	NA	-4	True	AATACA	-14	NA	52992003	52964346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_52964894_52991773
ENSMUSG00000043681.6_34073838_34080167_1	chr14	-	368	3	NNC	ENSMUSG00000043681.6	novel	408	3	NA	NA	-2777	0	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_2	1242	5984	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGAGTTTACCTCTGTT	NA	False	NA	-6	True	AATAAA	-21	NA	34080167	34073837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_34074035_34075654_34075718_34080059
ENSMUSG00000043681.6_34073838_34084269_1	chr14	-	402	3	NNC	ENSMUSG00000043681.6	novel	408	3	NA	NA	-6879	0	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_2	1267.5	6306	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGAGTTTACCTCTGTT	NA	False	NA	-6	True	AATAAA	-21	NA	34084269	34073837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_34074035_34075654_34075718_34084127
ENSMUSG00000043687.17_121335341_121353336_1	chr8	-	653	3	NNC	ENSMUSG00000043687.17	novel	844	4	NA	NA	7766	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	30	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCGGGTCCTGGTTTTTG	NA	False	NA	-1	True	AATAAA	-13	NA	121353336	121335340	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_121335770_121337932_121338077_121353256
ENSMUSG00000043702.10_26386174_26389685_1	chr14	-	1311	3	FSM	ENSMUSG00000043702.10	ENSMUST00000052932.10	7725	3	1353	5061	1353	-5061	multi-exon	FALSE	canonical	3	278	junction_2	18	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATAGCTTCTTCGTTT	NA	False	NA	-7	True	ATTAAA	-16	NA	26389685	26386173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_26387123_26387532_26387612_26389402
ENSMUSG00000043702.10_26386174_26390763_1	chr14	-	2389	3	FSM	ENSMUSG00000043702.10	ENSMUST00000052932.10	7725	3	275	5061	275	-5061	multi-exon	FALSE	canonical	3	278	junction_2	18	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATAGCTTCTTCGTTT	NA	False	NA	-7	True	ATTAAA	-16	NA	26390763	26386173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_26387123_26387532_26387612_26389402
ENSMUSG00000043716.14_16171530_16174626_1	chr1	-	876	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2500.70481731318	38760	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16174626	16171529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172808_16172915_16173054_16173391_16173559_16173733_16173909_16174588
ENSMUSG00000043716.14_16171530_16174626_10	chr1	-	887	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2985.37158025969	24990	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16174626	16171529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_16171584_16171950_16172156_16172709_16172824_16172915_16173054_16173391_16173559_16173733_16173905_16174588
ENSMUSG00000043716.14_16171530_16174626_11	chr1	-	891	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	382	junction_2	2273.01926593976	114859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16174626	16171529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_16171584_16171950_16172156_16172709_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
ENSMUSG00000043716.14_16171530_16174626_12	chr1	-	890	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2985.37158025969	64639	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16174626	16171529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_16171584_16171950_16172156_16172709_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174589
ENSMUSG00000043716.14_16171530_16174626_13	chr1	-	930	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_5	2412.63137235859	13968	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16174626	16171529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173597_16173733_16173909_16174588
ENSMUSG00000043716.14_16171530_16174626_2	chr1	-	883	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2415.49321510581	63069	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16174626	16171529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173550_16173733_16173909_16174588
ENSMUSG00000043716.14_16171530_16174626_3	chr1	-	901	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2415.49321510581	97544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16174626	16171529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173568_16173733_16173909_16174588
ENSMUSG00000043716.14_16171530_16174626_4	chr1	-	903	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2500.70481731318	147212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16174626	16171529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172904_16173054_16173391_16173559_16173733_16173909_16174588
ENSMUSG00000043716.14_16171530_16174626_5	chr1	-	885	7	NNC	ENSMUSG00000043716.14	novel	1597	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2482.96572782541	69115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16174626	16171529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173043_16173387_16173559_16173733_16173909_16174588
ENSMUSG00000043716.14_16171530_16174626_6	chr1	-	883	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2535.91209210589	41461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16174626	16171529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173896_16174584
ENSMUSG00000043716.14_16171530_16174626_7	chr1	-	878	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2415.49321510581	22990	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16174626	16171529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173545_16173733_16173909_16174588
ENSMUSG00000043716.14_16171530_16174626_8	chr1	-	892	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2500.70481731318	54554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16174626	16171529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172804_16172895_16173054_16173391_16173559_16173733_16173909_16174588
ENSMUSG00000043716.14_16171530_16174626_9	chr1	-	882	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2415.49321510581	37218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16174626	16171529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173545_16173729_16173909_16174588
ENSMUSG00000043773.6_121766289_121771063_2	chr9	+	693	5	NIC	ENSMUSG00000043773.6	novel	1900	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	4.81534007106456	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGTGCTTGTGTCCTTTT	6258	False	NA	NA	False	ATTAAA	-23	NA	121766288	121771063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_121766386_121767041_121767229_121768484_121768568_121769749_121769877_121770864
ENSMUSG00000043773.6_121767182_121775215_1	chr9	+	796	4	FSM	ENSMUSG00000043773.6	ENSMUST00000063103.5	1642	4	-19	865	0	-865	multi-exon	FALSE	canonical	2	5	junction_3	3.2659863237109	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCTGAGAATCTGGTTAT	7151	False	NA	NA	False	AATAAA	-43	NA	121767181	121775215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_121767229_121768484_121768568_121769749_121769877_121774676
ENSMUSG00000043801.8_17565390_17566476_1	chr17	-	944	2	Genic_Genomic	ENSMUSG00000043801.8	novel	685	1	NA	NA	-74	328	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1761	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTACTAAACCTCAAAGCA	NA	False	NA	NA	False	NA	NA	NA	17566476	17565389	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_-_17566114_17566256
ENSMUSG00000043801.8_17565390_17566476_2	chr17	-	940	2	Genic_Genomic	ENSMUSG00000043801.8	novel	685	1	NA	NA	-74	328	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1637	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTACTAAACCTCAAAGCA	NA	False	NA	NA	False	NA	NA	NA	17566476	17565389	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_-_17566108_17566254
ENSMUSG00000043866.12_105385878_105392129_1	chr7	-	1713	13	Fusion	ENSMUSG00000043866.12_ENSMUSG00000030888.15	novel	3053	7	NA	NA	688	-1979	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1000	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGCGCCCGCCGCCCGGCCC	7878	False	NA	NA	False	NA	NA	NA	105392129	105385877	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr7_-_105385924_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
ENSMUSG00000043866.12_105385878_105392129_2	chr7	-	1803	13	Fusion	ENSMUSG00000043866.12_ENSMUSG00000030888.15	novel	3053	7	NA	NA	688	-1979	multi-exon	FALSE	non_canonical	0	0	junction_1	0	989	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGCGCCCGCCGCCCGGCCC	7878	False	NA	NA	False	NA	NA	NA	105392129	105385877	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr7_-_105386014_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
ENSMUSG00000043866.12_105392103_105393146_1	chr7	-	458	4	FSM	ENSMUSG00000043866.12	ENSMUST00000131683.8	601	4	143	0	143	0	multi-exon	FALSE	canonical	3	1257	junction_1	50.2084543567006	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGCTGATCCCTCCCAT	6861	False	NA	-30	True	AATAAA	-15	NA	105393146	105392102	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_105392271_105392432_105392548_105392634_105392700_105393036
ENSMUSG00000043872.15_126941386_126954929_1	chr4	-	3337	8	FSM	ENSMUSG00000043872.15	ENSMUST00000106102.9	3852	8	16	499	-12	0	multi-exon	FALSE	canonical	3	376	junction_6	26.8206438918888	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATCCTAATGAAGTTTTG	NA	False	NA	NA	False	ATTAAA	-20	NA	126954929	126941385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
ENSMUSG00000043872.15_126948081_126954929_1	chr4	-	625	4	ISM	ENSMUSG00000043872.15	ENSMUST00000106099.8	2982	8	-12	6646	-12	0	5prime_fragment	FALSE	canonical	3	376	junction_2	38.9044413345772	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAAGAAAACCAGGT	NA	False	NA	NA	False	NA	NA	NA	126954929	126948080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_126948176_126952585_126952825_126953302_126953453_126954788
ENSMUSG00000043923.9_44318957_44321491_1	chr9	-	509	5	NNC	ENSMUSG00000043923.9	novel	651	5	NA	NA	1036	2499	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	15143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGAGAGAGTACTTCCGGG	NA	False	NA	NA	False	AAAAAG	-37	NA	44321491	44318956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_44319055_44319284_44319361_44319979_44320167_44321250_44321350_44321442
ENSMUSG00000043923.9_44318957_44321491_2	chr9	-	513	5	NNC	ENSMUSG00000043923.9	novel	651	5	NA	NA	1036	2499	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	21692	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGAGAGAGTACTTCCGGG	NA	False	NA	NA	False	AAAAAG	-37	NA	44321491	44318956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_44319055_44319284_44319381_44319995_44320167_44321250_44321350_44321442
ENSMUSG00000043923.9_44318957_44321491_3	chr9	-	507	5	NNC	ENSMUSG00000043923.9	novel	651	5	NA	NA	1036	2499	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	16477	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGAGAGAGTACTTCCGGG	NA	False	NA	NA	False	AAAAAG	-37	NA	44321491	44318956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_44319055_44319284_44319381_44320001_44320167_44321250_44321350_44321442
ENSMUSG00000043923.9_44319010_44321491_1	chr9	-	482	5	NNC	ENSMUSG00000043923.9	novel	651	5	NA	NA	1036	2446	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATGTCGGAAAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	44321491	44319009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_44319055_44319284_44319381_44319982_44320176_44321250_44321350_44321442
ENSMUSG00000043923.9_44319010_44321491_2	chr9	-	450	5	NNC	ENSMUSG00000043923.9	novel	651	5	NA	NA	1036	2446	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	782	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATGTCGGAAAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	44321491	44319009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_44319055_44319284_44319381_44319982_44320167_44321273_44321350_44321442
ENSMUSG00000043923.9_44319010_44321491_3	chr9	-	468	5	NNC	ENSMUSG00000043923.9	novel	651	5	NA	NA	1036	2446	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5133	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATGTCGGAAAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	44321491	44319009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_44319055_44319284_44319381_44319987_44320167_44321250_44321350_44321442
ENSMUSG00000043923.9_44319010_44321491_4	chr9	-	456	5	NNC	ENSMUSG00000043923.9	novel	651	5	NA	NA	1036	2446	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1176	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATGTCGGAAAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	44321491	44319009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_44319055_44319284_44319381_44319982_44320161_44321261_44321350_44321442
ENSMUSG00000043923.9_44319010_44321491_5	chr9	-	566	4	NIC	ENSMUSG00000043923.9	novel	877	3	NA	NA	1036	2446	intron_retention	FALSE	non_canonical	0	0	junction_1	0	926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATGTCGGAAAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	44321491	44319009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_44319055_44319284_44319381_44319982_44320167_44321250
ENSMUSG00000043923.9_44319010_44326172_1	chr9	-	478	6	NNC	ENSMUSG00000043923.9	novel	651	5	NA	NA	-1577	2446	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	15379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATGTCGGAAAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	44326172	44319009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_44319055_44319284_44319381_44319982_44320167_44321250_44321350_44321442_44321482_44326157
ENSMUSG00000043923.9_44319010_44326172_2	chr9	-	479	6	NNC	ENSMUSG00000043923.9	novel	651	5	NA	NA	-1577	2446	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	40410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATGTCGGAAAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	44326172	44319009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_44319055_44319284_44319381_44319982_44320167_44321250_44321350_44321442_44321488_44326162
ENSMUSG00000043923.9_44321458_44329284_1	chr9	-	1283	10	NIC	ENSMUSG00000043923.9	novel	1080	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	36	junction_5	10.0995049383621	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGCTGATTGAACCTGTA	8992	False	NA	-2	True	AATAAA	-19	NA	44329284	44321457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324499_44324739_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
ENSMUSG00000043923.9_44321458_44329284_2	chr9	-	1141	11	FSM	ENSMUSG00000043923.9	ENSMUST00000053286.9	1725	11	582	2	0	0	multi-exon	FALSE	canonical	3	28	junction_6	11.2853887837327	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGCTGATTGAACCTGTA	8992	False	NA	-2	True	AATAAA	-19	NA	44329284	44321457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324320_44324433_44324499_44324767_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
ENSMUSG00000043923.9_44321458_44329284_3	chr9	-	1169	11	NIC	ENSMUSG00000043923.9	novel	1725	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_6	9.58331884056875	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGCTGATTGAACCTGTA	8992	False	NA	-2	True	AATAAA	-19	NA	44329284	44321457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324320_44324433_44324499_44324739_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
ENSMUSG00000043929.17_93278210_93297673_1	chrX	+	1141	5	NIC	ENSMUSG00000043929.17	novel	627	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	18.9868375460475	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCAGCCTGGCATGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	93278209	93297673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_93278260_93278826_93279027_93285550_93285602_93296020_93296733_93297545
ENSMUSG00000043940.16_101985308_101992198_1	chr5	-	762	4	Genic_Genomic	ENSMUSG00000043940.16	novel	14274	67	NA	NA	7181	-1284	multi-exon	FALSE	non_canonical	0	0	junction_1	0	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCTCTCTCTCCACCTT	NA	False	NA	NA	False	NA	NA	NA	101992198	101985307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_-_101985425_101989616_101989710_101989836_101989940_101991749
ENSMUSG00000043962.17_126057875_126096440_1	chr4	-	4353	12	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	517	junction_11	115.160039556887	862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6787	False	NA	-3	True	AATAAA	-28	NA	126096440	126057874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
ENSMUSG00000043987.19_45721048_45739961_1	chr9	-	552	4	ISM	ENSMUSG00000043987.19	ENSMUST00000117194.8	5541	30	28	42804	-24	8320	5prime_fragment	FALSE	canonical	3	34	junction_3	3.85861230093008	1499	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAAGAAAAACAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	45739961	45721047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_45721207_45729275_45729388_45734943_45735063_45739799
ENSMUSG00000043987.19_45721048_45744844_1	chr9	-	506	4	NNC	ENSMUSG00000043987.19	novel	5541	30	NA	NA	-4855	8320	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	19.8158185969358	185	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAAGAAAAACAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	45744844	45721047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_45721207_45729275_45729388_45734943_45735063_45744728
ENSMUSG00000044018.4_49512596_49521093_1	chr4	-	2092	3	NNC	ENSMUSG00000044018.4	novel	2114	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	143	junction_1	569	5710	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTTTTAAAGTGTTATT	NA	False	NA	0	True	AATAAA	-21	NA	49521093	49512595	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_49512737_49512758_49514578_49520961
ENSMUSG00000044018.4_49513966_49521093_1	chr4	-	740	2	NNC	ENSMUSG00000044018.4	novel	2114	2	NA	NA	0	-1370	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	3907	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAACTTTGTTATTCCAA	NA	False	NA	-6	True	AATAAA	-20	NA	49521093	49513965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_49514574_49520961
ENSMUSG00000044018.4_49513966_49521093_2	chr4	-	744	2	FSM	ENSMUSG00000044018.4	ENSMUST00000057829.4	2114	2	0	1370	0	-1370	multi-exon	FALSE	canonical	3	1281	junction_1	0	4004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAACTTTGTTATTCCAA	NA	False	NA	-6	True	AATAAA	-20	NA	49521093	49513965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_49514578_49520961
ENSMUSG00000044033.17_76879911_77000954_1	chr2	-	2035	12	ISM	ENSMUSG00000044033.17	ENSMUST00000164114.9	6222	24	7	39572	0	-4596	5prime_fragment	TRUE	canonical	3	25	junction_4	5.66269509178089	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGAAGCCAGCACCTTTT	NA	False	NA	-2	True	AATAAA	-17	NA	77000954	76879910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_76880103_76884920_76885113_76888236_76888357_76889883_76890026_76905179_76905353_76919413_76919609_76938706_76938824_76954465_76954720_76958572_76958682_76962525_76962718_76998854_76998978_77000728
ENSMUSG00000044098.15_103821883_103835736_1	chr3	+	657	2	ISM	ENSMUSG00000044098.15	ENSMUST00000151927.4	3649	8	0	35451	0	-31716	5prime_fragment	FALSE	canonical	3	60	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAGAAACATCGAGAAG	NA	False	NA	NA	False	AATAAA	-10	NA	103821882	103835736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_103822470_103835666
ENSMUSG00000044122.16_78085384_78096331_1	chr11	+	1144	3	FSM	ENSMUSG00000044122.16	ENSMUST00000060539.13	960	3	-146	-38	-146	1	multi-exon	FALSE	canonical	3	12	junction_2	1	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTACCGCTATTCTCTGCC	NA	False	NA	8	True	AATAAA	-17	NA	78085383	78096331	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78085781_78092637_78092719_78095665
ENSMUSG00000044122.16_78085572_78096331_1	chr11	+	956	3	FSM	ENSMUSG00000044122.16	ENSMUST00000060539.13	960	3	42	-38	0	1	multi-exon	FALSE	canonical	3	12	junction_2	1	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTACCGCTATTCTCTGCC	NA	False	NA	8	True	AATAAA	-17	NA	78085571	78096331	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78085781_78092637_78092719_78095665
ENSMUSG00000044148.7_12521118_12539745_1	chrX	-	2537	7	FSM	ENSMUSG00000044148.7	ENSMUST00000060108.7	2699	7	162	0	162	0	multi-exon	FALSE	canonical	3	210	junction_4	24.9377001523575	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTACAGTTTTTAATTTC	NA	False	NA	-3	True	AATAAA	-25	NA	12539745	12521117	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_12522726_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
ENSMUSG00000044148.7_12522494_12539745_1	chrX	-	1161	7	FSM	ENSMUSG00000044148.7	ENSMUST00000060108.7	2699	7	162	1376	162	-1376	multi-exon	FALSE	canonical	3	210	junction_4	24.9377001523575	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATCTTCCAGGTTGCTG	NA	False	NA	NA	False	AATACA	-22	NA	12539745	12522493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_12522726_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
ENSMUSG00000044148.7_12522494_12539907_1	chrX	-	1323	7	FSM	ENSMUSG00000044148.7	ENSMUST00000060108.7	2699	7	0	1376	0	-1376	multi-exon	FALSE	canonical	3	210	junction_4	24.9377001523575	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATCTTCCAGGTTGCTG	NA	False	NA	NA	False	AATACA	-22	NA	12539907	12522493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_12522726_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
ENSMUSG00000044155.12_18848640_18854052_1	chr6	+	740	4	NNC	ENSMUSG00000044155.12	novel	807	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	459.95096356991	11213	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTTTCTTTTCTTTCCT	-9	True	NA	17	True	AATAAA	-17	NA	18848639	18854052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_18848763_18849624_18849666_18851634_18851763_18853604
ENSMUSG00000044211.10_48501307_48502045_1	chr6	-	687	2	Genic_Genomic	ENSMUSG00000044211.10	novel	537	1	NA	NA	-21	181	multi-exon	FALSE	non_canonical	3	441	junction_1	0	400	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTAATTTATGTTTTATA	NA	False	NA	NA	False	AATAAA	-17	NA	48502045	48501306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_48501909_48501960
ENSMUSG00000044224.17_10446852_10461267_1	chr15	-	1219	8	NIC	ENSMUSG00000044224.17	novel	1441	8	NA	NA	226	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	296.001861549579	835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACATGTGCCTTTCTGCTT	9300	False	NA	-25	True	ATTAAA	-13	NA	10461267	10446851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_10447313_10447781_10447858_10449661_10449835_10451640_10451684_10452291_10452451_10454855_10454944_10460035_10460193_10461205
ENSMUSG00000044224.17_10446852_10470432_1	chr15	-	1880	12	FSM	ENSMUSG00000044224.17	ENSMUST00000136591.8	2060	12	170	10	170	0	multi-exon	FALSE	canonical	3	660	junction_1	60.8163473021321	909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACATGTGCCTTTCTGCTT	135	False	NA	-25	True	ATTAAA	-13	NA	10470432	10446851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_10447313_10447781_10447858_10449661_10449835_10451640_10451684_10452291_10452451_10454855_10454944_10460040_10460193_10461205_10461511_10461961_10462085_10462308_10462433_10463972_10464067_10470350
ENSMUSG00000044279.16_57369283_57372918_1	chr17	+	1375	3	FSM	ENSMUSG00000044279.16	ENSMUST00000163763.2	868	3	-16	-491	0	0	multi-exon	FALSE	canonical	3	202	junction_2	10.5	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTAGCTGTAAGCTCTT	1578	False	NA	NA	False	AATAAA	-31	NA	57369282	57372918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57369767_57370636_57370699_57372089
ENSMUSG00000044279.16_57369299_57372918_1	chr17	+	984	4	NIC	ENSMUSG00000044279.16	novel	778	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	51	junction_3	76.6130247122221	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTAGCTGTAAGCTCTT	1594	False	NA	NA	False	AATAAA	-31	NA	57369298	57372918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_57369767_57370636_57370699_57372089_57372234_57372608
ENSMUSG00000044285.9_46321485_46322457_1	chr14	+	517	2	NNC	ENSMUSG00000044285.9	novel	750	2	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1527	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACTCCAGAAAATCAAATAA	NA	False	NA	NA	False	NA	NA	NA	46321484	46322457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_46321748_46322203
ENSMUSG00000044285.9_46321485_46322457_3	chr14	+	745	2	NNC	ENSMUSG00000044285.9	novel	750	2	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	3568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACTCCAGAAAATCAAATAA	NA	False	NA	NA	False	NA	NA	NA	46321484	46322457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_46321859_46322086
ENSMUSG00000044285.9_46321485_46322457_5	chr14	+	518	2	NNC	ENSMUSG00000044285.9	novel	750	2	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1968	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACTCCAGAAAATCAAATAA	NA	False	NA	NA	False	NA	NA	NA	46321484	46322457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_46321625_46322079
ENSMUSG00000044285.9_46321585_46322457_1	chr14	+	645	2	NNC	ENSMUSG00000044285.9	novel	750	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACTCCAGAAAATCAAATAA	NA	False	NA	NA	False	NA	NA	NA	46321584	46322457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_46321859_46322086
ENSMUSG00000044328.14_77398925_77404196_1	chr11	-	1542	6	NIC	ENSMUSG00000044328.14	novel	1463	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	179	junction_5	7.1386273190299	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTTGGGAGATTGTCTCT	NA	False	NA	1	True	ATTAAA	-21	NA	77404196	77398924	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_77399818_77399901_77400100_77400423_77400553_77403478_77403521_77403722_77403792_77403985
ENSMUSG00000044339.13_114261987_114266251_1	chr5	-	1002	4	NIC	ENSMUSG00000044339.13	novel	1073	4	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_3	238.844905511692	4490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	8006	False	NA	-2	True	AATAAA	-22	NA	114266251	114261986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_114262316_114263592_114263792_114265586_114265831_114266021
ENSMUSG00000044339.13_114261987_114268772_1	chr5	-	1028	4	NNC	ENSMUSG00000044339.13	novel	1073	4	NA	NA	-2493	0	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_3	211.98480029369	2622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	5485	False	NA	-2	True	AATAAA	-22	NA	114268772	114261986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_114262316_114263592_114263792_114265586_114265831_114268516
ENSMUSG00000044348.15_135903531_135939051_1	chrX	-	1779	7	NNC	ENSMUSG00000044348.15	novel	1740	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	13.0724477007517	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGAGATTATCCCTAGTT	NA	False	NA	NA	False	NA	NA	NA	135939051	135903530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135930774_135930857_135933099_135933250_135938914
ENSMUSG00000044348.15_135903531_135939051_2	chrX	-	1697	6	NIC	ENSMUSG00000044348.15	novel	1740	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_4	11.7813411800185	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGAGATTATCCCTAGTT	NA	False	NA	NA	False	NA	NA	NA	135939051	135903530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135933099_135933250_135938914
ENSMUSG00000044348.15_135932544_135938757_1	chrX	-	785	2	ISM	ENSMUSG00000044348.15	ENSMUST00000125864.2	343	3	16	1793	0	0	5prime_fragment	FALSE	canonical	0	0	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGTAAAAAGT	NA	False	NA	NA	False	AGTAAA	-7	NA	135938757	135932543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_135933250_135938678
ENSMUSG00000044408.8_54692177_54703293_1	chr12	-	1276	2	NNC	ENSMUSG00000044408.8	novel	1346	2	NA	NA	-12	0	intron_retention	FALSE	canonical	0	0	junction_1	0	2214	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCTCTTTTATGGTTAA	NA	False	NA	NA	False	ATTAAA	-17	NA	54703293	54692176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_54693321_54703161
ENSMUSG00000044408.8_54692186_54703358_1	chr12	-	1337	2	FSM	ENSMUSG00000044408.8	ENSMUST00000056228.8	1346	2	0	9	0	0	multi-exon	FALSE	canonical	3	293	junction_1	0	2266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTAGCAGTCTCTTT	NA	False	NA	NA	False	ATTAAA	-8	NA	54703358	54692185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_54693321_54703156
ENSMUSG00000044424.5_23596692_23597732_1	chr19	+	666	2	Genic_Genomic	ENSMUSG00000044424.5	novel	571	1	NA	NA	-421	49	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGGCTCAGAACTGAACAA	NA	False	NA	NA	False	AATAAA	-31	NA	23596691	23597732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr19_+_23596738_23597112
ENSMUSG00000044429.9_65139548_65142390_1	chr1	-	588	2	FSM	ENSMUSG00000044429.9	ENSMUST00000154012.2	717	2	129	0	129	0	multi-exon	FALSE	canonical	2	4	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCTTGCTTATCTTCA	NA	False	NA	NA	False	AATAAA	-27	NA	65142390	65139547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_65139885_65142139
ENSMUSG00000044442.12_87151115_87154091_1	chr16	+	553	3	ISM	ENSMUSG00000044442.12	ENSMUST00000120284.8	3473	4	-16	8467	0	-8467	5prime_fragment	FALSE	canonical	3	124	junction_1	1	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTTTCTTTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	87151114	87154091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_87151275_87153065_87153153_87153785
ENSMUSG00000044442.12_87151115_87158812_1	chr16	+	480	4	NNC	ENSMUSG00000044442.12	novel	1700	5	NA	NA	0	-3746	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_3	53.2749680640188	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCCTTCTTGGTGTTTTCT	NA	False	NA	NA	False	AAAACA	-31	NA	87151114	87158812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_87151275_87153065_87153153_87153785_87153877_87158670
ENSMUSG00000044442.12_87151115_87164589_1	chr16	+	801	6	FSM	ENSMUSG00000044442.12	ENSMUST00000054442.11	1884	6	42	1041	0	16	multi-exon	FALSE	canonical	3	84	junction_5	18.2931681236466	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGCCAGGTGGTGGTGG	NA	False	NA	NA	False	AAGAAA	-39	NA	87151114	87164589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87163026_87163169_87164352
ENSMUSG00000044442.12_87151115_87165400_1	chr16	+	1612	6	FSM	ENSMUSG00000044442.12	ENSMUST00000054442.11	1884	6	42	230	0	-230	multi-exon	FALSE	canonical	3	84	junction_5	18.2931681236466	791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTGAATCCATTCCAC	NA	False	NA	NA	False	AATAAA	-2	NA	87151114	87165400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87163026_87163169_87164352
ENSMUSG00000044469.9_56469477_56480020_1	chr17	+	1444	2	FSM	ENSMUSG00000044469.9	ENSMUST00000077788.7	2379	2	0	935	0	-935	multi-exon	FALSE	canonical	2	6	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGCTTGTCACCAAACTT	413	False	NA	NA	False	AATAAA	-30	NA	56469476	56480020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_56469607_56478706
ENSMUSG00000044475.15_59838661_59867526_1	chr10	+	770	6	NNC	ENSMUSG00000044475.15	novel	1450	11	NA	NA	0	5365	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	97.6061473473879	69	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTCACTTGATCTGCTT	NA	False	NA	NA	False	NA	NA	NA	59838660	59867526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_59838730_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59867335
ENSMUSG00000044475.15_59838661_59935808_1	chr10	+	1352	10	NIC	ENSMUSG00000044475.15	novel	1450	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	69.3265666213622	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTGTGGTCTGTGCA	NA	False	NA	26	True	AATAAA	-16	NA	59838660	59935808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_59838730_59840616_59840750_59843548_59843649_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
ENSMUSG00000044475.15_59838661_59935808_2	chr10	+	1442	11	NNC	ENSMUSG00000044475.15	novel	1450	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_10	70.1604589494681	871	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTGTGGTCTGTGCA	NA	False	NA	26	True	AATAAA	-16	NA	59838660	59935808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_59838730_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935535
ENSMUSG00000044475.15_59838661_59935808_3	chr10	+	1444	11	NNC	ENSMUSG00000044475.15	novel	1450	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	71.820957944043	895	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTGTGGTCTGTGCA	NA	False	NA	26	True	AATAAA	-16	NA	59838660	59935808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_59838730_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900150_59900231_59933914_59934037_59935527
ENSMUSG00000044475.15_59839049_59935808_1	chr10	+	1460	11	NNC	ENSMUSG00000044475.15	novel	1230	6	NA	NA	-100	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	72.3599336649779	844	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTGTGGTCTGTGCA	NA	False	NA	26	True	AATAAA	-16	NA	59839048	59935808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_59839128_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
ENSMUSG00000044477.13_30372277_30427393_1	chr17	+	636	3	ISM	ENSMUSG00000044477.13	ENSMUST00000234902.2	2289	4	17113	1601	17113	0	3prime_fragment	FALSE	canonical	3	114	junction_2	3.5	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGGCTAGTGGATTTACA	NA	False	NA	22	True	ATTAAA	-23	NA	30372276	30427393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_30372343_30411536_30411705_30426991
ENSMUSG00000044502.17_31615181_31621727_1	chr11	-	1236	4	FSM	ENSMUSG00000044502.17	ENSMUST00000058060.14	1394	4	158	0	0	0	multi-exon	FALSE	canonical	3	568	junction_1	23.4141457717813	465	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGACGATCTTTCCC	NA	False	NA	-29	True	AATAAA	-22	NA	31621727	31615180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_31615868_31616736_31616934_31619243_31619369_31621500
ENSMUSG00000044533.16_24939084_24940899_1	chr17	+	930	6	NNC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4496.90767528087	54233	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6237	False	NA	0	True	AATAAA	-19	NA	24939083	24940899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_24939107_24939246_24939407_24939507_24939706_24939942_24940277_24940596_24940689_24940776
ENSMUSG00000044533.16_24939084_24940899_10	chr17	+	944	6	NNC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4018.03009446171	69553	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6237	False	NA	0	True	AATAAA	-19	NA	24939083	24940899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940601_24940689_24940777
ENSMUSG00000044533.16_24939084_24940899_11	chr17	+	941	6	NNC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4389.40749532326	172166	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6237	False	NA	0	True	AATAAA	-19	NA	24939083	24940899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_24939107_24939246_24939427_24939507_24939706_24939951_24940277_24940596_24940689_24940776
ENSMUSG00000044533.16_24939084_24940899_12	chr17	+	921	6	NNC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4114.97385653907	7472	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6237	False	NA	0	True	AATAAA	-19	NA	24939083	24940899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940625_24940689_24940776
ENSMUSG00000044533.16_24939084_24940899_13	chr17	+	1270	5	NIC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	3280	junction_1	2888.71133682478	2743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6237	False	NA	0	True	AATAAA	-19	NA	24939083	24940899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940689_24940776
ENSMUSG00000044533.16_24939084_24940899_14	chr17	+	937	6	NNC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	4131.25825869069	44670	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6237	False	NA	0	True	AATAAA	-19	NA	24939083	24940899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940596_24940676_24940776
ENSMUSG00000044533.16_24939084_24940899_2	chr17	+	1031	5	NIC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	3280	junction_1	3188.11441137234	33836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6237	False	NA	0	True	AATAAA	-19	NA	24939083	24940899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_24939107_24939246_24939706_24939942_24940277_24940596_24940689_24940776
ENSMUSG00000044533.16_24939084_24940899_3	chr17	+	935	6	NNC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	4114.97385653907	52616	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6237	False	NA	0	True	AATAAA	-19	NA	24939083	24940899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940611_24940689_24940776
ENSMUSG00000044533.16_24939084_24940899_4	chr17	+	926	6	NNC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	4131.25825869069	10541	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6237	False	NA	0	True	AATAAA	-19	NA	24939083	24940899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940596_24940665_24940776
ENSMUSG00000044533.16_24939084_24940899_6	chr17	+	963	6	NIC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	95	junction_5	4101.80189672783	161065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6237	False	NA	0	True	AATAAA	-19	NA	24939083	24940899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940596_24940702_24940776
ENSMUSG00000044533.16_24939084_24940899_7	chr17	+	933	6	NNC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4114.97385653907	39685	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6237	False	NA	0	True	AATAAA	-19	NA	24939083	24940899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940260_24940596_24940689_24940776
ENSMUSG00000044533.16_24939084_24940899_8	chr17	+	941	6	NNC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4389.40749532326	76758	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6237	False	NA	0	True	AATAAA	-19	NA	24939083	24940899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_24939107_24939246_24939427_24939507_24939699_24939944_24940277_24940596_24940689_24940776
ENSMUSG00000044533.16_24939084_24940899_9	chr17	+	1187	5	NIC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	3280	junction_1	3156.98942823697	4484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6237	False	NA	0	True	AATAAA	-19	NA	24939083	24940899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_24939107_24939246_24939427_24939507_24940277_24940596_24940689_24940776
ENSMUSG00000044573.17_30944966_30961570_1	chr12	-	1425	6	FSM	ENSMUSG00000044573.17	ENSMUST00000074038.7	2754	6	18	1311	0	909	multi-exon	FALSE	canonical	3	735	junction_4	354.017287713467	5230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTGTCTGCCTGCTTCT	NA	False	NA	NA	False	AATACA	-14	NA	30961570	30944965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954716_30954831_30955067_30955142_30961488
ENSMUSG00000044573.17_30944966_30961570_2	chr12	-	1425	6	FSM	ENSMUSG00000044573.17	ENSMUST00000062740.15	3066	6	0	1641	0	909	multi-exon	FALSE	canonical	3	836	junction_3	311.492279198057	5412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTGTCTGCCTGCTTCT	NA	False	NA	NA	False	AATACA	-14	NA	30961570	30944965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954868_30954983_30955067_30955142_30961488
ENSMUSG00000044573.17_30945150_30961570_1	chr12	-	1241	6	FSM	ENSMUSG00000044573.17	ENSMUST00000062740.15	3066	6	0	1825	0	725	multi-exon	FALSE	canonical	3	836	junction_3	311.492279198057	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGTGCTTAAATACTG	NA	False	NA	NA	False	TTTAAA	-7	NA	30961570	30945149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954868_30954983_30955067_30955142_30961488
ENSMUSG00000044573.17_30945150_30961570_2	chr12	-	1241	6	FSM	ENSMUSG00000044573.17	ENSMUST00000074038.7	2754	6	18	1495	0	725	multi-exon	FALSE	canonical	3	735	junction_4	354.017287713467	625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGTGCTTAAATACTG	NA	False	NA	NA	False	TTTAAA	-7	NA	30961570	30945149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954716_30954831_30955067_30955142_30961488
ENSMUSG00000044573.17_30945698_30961570_1	chr12	-	693	6	FSM	ENSMUSG00000044573.17	ENSMUST00000074038.7	2754	6	18	2043	0	177	multi-exon	FALSE	canonical	3	735	junction_4	354.017287713467	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAGGTGTGGCTAAGCA	NA	False	NA	NA	False	GATAAA	-18	NA	30961570	30945697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954716_30954831_30955067_30955142_30961488
ENSMUSG00000044573.17_30945698_30961570_2	chr12	-	693	6	FSM	ENSMUSG00000044573.17	ENSMUST00000062740.15	3066	6	0	2373	0	177	multi-exon	FALSE	canonical	3	836	junction_3	311.492279198057	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAGGTGTGGCTAAGCA	NA	False	NA	NA	False	GATAAA	-18	NA	30961570	30945697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954868_30954983_30955067_30955142_30961488
ENSMUSG00000044595.11_36893273_36896863_1	chr18	-	1396	8	NNC	ENSMUSG00000044595.11	novel	1451	4	NA	NA	2388	3451	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCGGGATCGGAAGTGCA	NA	False	NA	NA	False	NA	NA	NA	36896863	36893272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_36893534_36895029_36895131_36895218_36895307_36895407_36895588_36895710_36895811_36895901_36896072_36896144_36896173_36896395
ENSMUSG00000044595.11_36893273_36896863_2	chr18	-	1629	7	NIC	ENSMUSG00000044595.11	novel	1451	4	NA	NA	2388	3451	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCGGGATCGGAAGTGCA	NA	False	NA	NA	False	NA	NA	NA	36896863	36893272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_-_36893534_36895029_36895131_36895218_36895307_36895407_36895588_36895710_36895821_36895901_36896072_36896144
ENSMUSG00000044626.14_21774334_21814263_1	chr16	-	2006	10	FSM	ENSMUSG00000044626.14	ENSMUST00000060673.8	3923	10	150	1767	0	0	multi-exon	FALSE	canonical	3	141	junction_8	25.7197623013804	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGGTTTGGCTCTTACGT	NA	False	NA	NA	False	NA	NA	NA	21814263	21774333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21792807_21792898_21794982_21795085_21800085_21800195_21802650_21803019_21814070
ENSMUSG00000044627.12_32168828_32178022_1	chr2	-	698	4	NNC	ENSMUSG00000044627.12	novel	768	5	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1628.30675515668	4481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178022	32168827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_32169144_32170720_32170816_32171697_32171856_32177893
ENSMUSG00000044627.12_32168828_32178022_2	chr2	-	707	5	NNC	ENSMUSG00000044627.12	novel	768	5	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1492.44472259444	34393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178022	32168827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177651_32177893
ENSMUSG00000044627.12_32168828_32178022_3	chr2	-	707	4	NNC	ENSMUSG00000044627.12	novel	768	5	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1628.30675515668	14783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178022	32168827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_32169144_32170720_32170816_32171697_32171844_32177872
ENSMUSG00000044627.12_32168828_32178022_4	chr2	-	686	4	NNC	ENSMUSG00000044627.12	novel	768	5	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1628.30675515668	3489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178022	32168827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_32169144_32170720_32170816_32171697_32171823_32177872
ENSMUSG00000044627.12_32168828_32178022_5	chr2	-	694	4	NNC	ENSMUSG00000044627.12	novel	768	5	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1628.30675515668	3007	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178022	32168827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_32169144_32170720_32170816_32171697_32171856_32177897
ENSMUSG00000044627.12_32168828_32178022_6	chr2	-	698	5	NNC	ENSMUSG00000044627.12	novel	768	5	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1498.56506365256	31051	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178022	32168827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_32169144_32170720_32170816_32171709_32171823_32177608_32177658_32177897
ENSMUSG00000044627.12_32168828_32178084_1	chr2	-	627	5	FSM	ENSMUSG00000044627.12	ENSMUST00000113400.3	522	5	-3	-102	-3	0	multi-exon	FALSE	canonical	3	43	junction_4	1473.86522026269	4948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178084	32168827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32178042
ENSMUSG00000044647.17_65676189_65853828_1	chr2	+	2370	6	FSM	ENSMUSG00000044647.17	ENSMUST00000053910.10	4495	6	3	2122	0	0	multi-exon	FALSE	canonical	2	6	junction_1	3.18747549010185	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGTATTTTATTTATG	5681	False	NA	13	True	AAAAAG	-12	NA	65676188	65853828	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_65676229_65708308_65708397_65779302_65779474_65832646_65832907_65849783_65850081_65852314
ENSMUSG00000044678.12_74668723_74671664_1	chr15	-	620	4	FSM	ENSMUSG00000044678.12	ENSMUST00000060301.6	791	4	171	0	171	0	multi-exon	FALSE	canonical	3	104	junction_3	10.2740233382816	1078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTTGGTTTGACTTCTG	947	False	NA	-2	True	ATTAAA	-18	NA	74671664	74668722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_74669121_74670383_74670483_74671267_74671345_74671618
ENSMUSG00000044681.20_28406632_28414920_1	chr5	-	2699	3	FSM	ENSMUSG00000044681.20	ENSMUST00000118882.2	1984	3	100	-815	100	815	multi-exon	FALSE	canonical	3	175	junction_1	2	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCACTGTCTCTCTGCCT	NA	False	NA	-3	True	ATTAAA	-26	NA	28414920	28406631	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_28408435_28412284_28412382_28414121
ENSMUSG00000044681.20_28407447_28414920_1	chr5	-	1884	3	FSM	ENSMUSG00000044681.20	ENSMUST00000118882.2	1984	3	100	0	100	0	multi-exon	FALSE	canonical	3	175	junction_1	2	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTGAAACTTGCATGAAT	NA	False	NA	-6	True	ATTAAA	-17	NA	28414920	28407446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_28408435_28412284_28412382_28414121
ENSMUSG00000044681.20_28408141_28414920_1	chr5	-	1190	3	FSM	ENSMUSG00000044681.20	ENSMUST00000118882.2	1984	3	100	694	100	-694	multi-exon	FALSE	canonical	3	175	junction_1	2	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGCAAAGCTATTTCTTGAA	NA	False	NA	NA	False	ATTAAA	-17	NA	28414920	28408140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_28408435_28412284_28412382_28414121
ENSMUSG00000044702.14_121706490_121732142_1	chr7	-	1652	11	NIC	ENSMUSG00000044702.14	novel	3750	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_8	41.0980534818865	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTGCTTGGCTTGTTCT	NA	False	NA	-5	True	AATAAA	-15	NA	121732142	121706489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121728145_121728240_121728896_121728957_121731942
ENSMUSG00000044709.7_19298689_19307320_1	chr7	-	952	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	-10	182	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	112.5	705	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTGGCTTTCCTTT	2892	False	NA	NA	False	AAGAAA	-17	NA	19307320	19298688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19298802_19298849_19299602_19307233
ENSMUSG00000044709.7_19298689_19307748_1	chr7	-	917	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	0	182	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	27	1030	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTGGCTTTCCTTT	2464	False	NA	NA	False	AAGAAA	-17	NA	19307748	19298688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19298790_19298841_19299602_19307692
ENSMUSG00000044709.7_19298689_19307748_2	chr7	-	917	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	0	182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7.5	315	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTGGCTTTCCTTT	2464	False	NA	NA	False	AAGAAA	-17	NA	19307748	19298688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19298802_19298849_19299598_19307692
ENSMUSG00000044709.7_19298689_19307748_3	chr7	-	915	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	0	182	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	27	1001	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTGGCTTTCCTTT	2464	False	NA	NA	False	AAGAAA	-17	NA	19307748	19298688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19298790_19298843_19299602_19307692
ENSMUSG00000044709.7_19298689_19307748_4	chr7	-	921	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	0	182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27	979	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTGGCTTTCCTTT	2464	False	NA	NA	False	AAGAAA	-17	NA	19307748	19298688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19298802_19298849_19299602_19307692
ENSMUSG00000044709.7_19298689_19307748_5	chr7	-	919	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	0	182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27	1034	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTGGCTTTCCTTT	2464	False	NA	NA	False	AAGAAA	-17	NA	19307748	19298688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19298796_19298845_19299602_19307692
ENSMUSG00000044709.7_19298871_19306910_1	chr7	-	810	2	FSM	ENSMUSG00000044709.7	ENSMUST00000122127.2	652	2	-17	-141	-17	0	multi-exon	FALSE	canonical	3	34	junction_1	0	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCTGTGTGTGTGTGTG	3302	False	NA	-6	True	AATAAA	-22	NA	19306910	19298870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19299602_19306831
ENSMUSG00000044709.7_19298871_19307014_1	chr7	-	914	2	FSM	ENSMUSG00000044709.7	ENSMUST00000122127.2	652	2	-121	-141	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCTGTGTGTGTGTGTG	3198	False	NA	-6	True	AATAAA	-22	NA	19307014	19298870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19299602_19306831
ENSMUSG00000044709.7_19298871_19307748_1	chr7	-	787	2	NIC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	54	junction_1	0	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCTGTGTGTGTGTGTG	2464	False	NA	-6	True	AATAAA	-22	NA	19307748	19298870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_19299602_19307692
ENSMUSG00000044715.8_105651660_105665414_1	chr12	+	496	2	FSM	ENSMUSG00000044715.8	ENSMUST00000222284.2	1064	2	572	-4	0	4	multi-exon	FALSE	canonical	3	132	junction_1	0	599	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGGGTGTAAATACATT	NA	False	NA	NA	False	AATAAA	-19	NA	105651659	105665414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_105651718_105664976
ENSMUSG00000044730.18_124830851_124832929_1	chr4	+	885	3	FSM	ENSMUSG00000044730.18	ENSMUST00000233530.2	1203	3	0	318	0	-318	multi-exon	FALSE	canonical	3	26	junction_1	13	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGGGTGGCGAGGAGTG	NA	False	NA	NA	False	AATAAA	-26	NA	124830850	124832929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_124830884_124830971_124831127_124832232
ENSMUSG00000044734.17_33026694_33035168_1	chr13	-	1299	7	FSM	ENSMUSG00000044734.17	ENSMUST00000076352.8	1918	7	0	619	0	-619	multi-exon	FALSE	canonical	3	136	junction_6	10.85382677011	764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATCTTTCTTTTGTATGT	4869	False	NA	-2	True	AATAAA	-16	NA	33035168	33026693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_33027206_33029291_33029460_33029653_33029797_33031372_33031491_33032601_33032740_33034221_33034398_33035124
ENSMUSG00000044734.17_33026694_33035168_2	chr13	-	1304	7	NNC	ENSMUSG00000044734.17	novel	1918	7	NA	NA	0	-619	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	59.0846849868898	755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATCTTTCTTTTGTATGT	4869	False	NA	-2	True	AATAAA	-16	NA	33035168	33026693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_33027206_33029291_33029460_33029648_33029797_33031372_33031491_33032601_33032740_33034221_33034398_33035124
ENSMUSG00000044763.9_55854081_55858182_1	chr16	-	1893	2	FSM	ENSMUSG00000044763.9	ENSMUST00000059052.9	3002	2	0	1109	0	-1109	multi-exon	FALSE	canonical	3	404	junction_1	0	1070	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGATTCTTTGAATATCAGA	7386	False	NA	-3	True	AATAAA	-23	NA	55858182	55854080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_55855655_55857863
ENSMUSG00000044791.17_110446408_110447682_1	chr9	+	993	2	ISM	ENSMUSG00000044791.17	ENSMUST00000197399.2	767	6	15166	-466	-261	0	3prime_fragment	FALSE	canonical	3	155	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGCTCCCTCAAAATTA	NA	False	NA	20	True	AATAAA	-21	NA	110446407	110447682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_110446604_110446885
ENSMUSG00000044792.8_59904576_59917602_1	chr13	-	567	4	FSM	ENSMUSG00000044792.8	ENSMUST00000057115.7	1942	4	22	1353	0	0	multi-exon	FALSE	canonical	3	417	junction_3	1.63299316185545	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTCGTGGGTGAAAATAA	NA	False	NA	NA	False	AAGAAA	-36	NA	59917602	59904575	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_59904818_59906703_59906810_59910555_59910610_59917437
ENSMUSG00000044816.11_65144444_65149383_1	chr1	-	827	4	NNC	ENSMUSG00000044816.11	novel	1156	8	NA	NA	12890	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	16.739839372653	270	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTGGATGTCAGCTCTT	9665	False	NA	NA	False	AATAAA	-11	NA	65149383	65144443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_65144910_65148620_65148736_65149035_65149115_65149216
ENSMUSG00000044816.11_65144444_65149383_2	chr1	-	832	4	NNC	ENSMUSG00000044816.11	novel	1156	8	NA	NA	12890	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_3	4.02768199119819	278	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTGGATGTCAGCTCTT	9665	False	NA	NA	False	AATAAA	-11	NA	65149383	65144443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_65144910_65148620_65148736_65149035_65149124_65149220
ENSMUSG00000044820.7_54858099_54865314_1	chr9	-	1135	9	Genic_Genomic	ENSMUSG00000044820.7	novel	769	1	NA	NA	-7032	-585	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9300	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCCCGCGCGTGCGCAGG	NA	False	NA	NA	False	NA	NA	NA	54865314	54858098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_-_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862254_54863540_54863667_54864094_54864219_54864918
ENSMUSG00000044820.7_54858099_54865314_3	chr9	-	1125	9	Genic_Genomic	ENSMUSG00000044820.7	novel	769	1	NA	NA	-7032	-585	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6501	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCCCGCGCGTGCGCAGG	NA	False	NA	NA	False	NA	NA	NA	54865314	54858098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_-_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861961_54862025_54862164_54862254_54863540_54863672_54864094_54864219_54864918
ENSMUSG00000044820.7_54858099_54865314_4	chr9	-	1132	9	Genic_Genomic	ENSMUSG00000044820.7	novel	769	1	NA	NA	-7032	-585	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9315	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCCCGCGCGTGCGCAGG	NA	False	NA	NA	False	NA	NA	NA	54865314	54858098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_-_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862246_54863540_54863672_54864094_54864219_54864918
ENSMUSG00000044820.7_54858099_54865314_5	chr9	-	1113	8	Genic_Genomic	ENSMUSG00000044820.7	novel	769	1	NA	NA	-7032	-585	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1669	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCCCGCGCGTGCGCAGG	NA	False	NA	NA	False	NA	NA	NA	54865314	54858098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_-_54858188_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862254_54863540_54863672_54864094_54864219_54864918
ENSMUSG00000044820.7_54858099_54865314_6	chr9	-	1130	8	Genic_Genomic	ENSMUSG00000044820.7	novel	769	1	NA	NA	-7032	-585	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2542	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCCCGCGCGTGCGCAGG	NA	False	NA	NA	False	NA	NA	NA	54865314	54858098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_-_54858188_54859365_54859393_54859929_54860126_54861946_54862025_54862164_54862254_54863540_54863672_54864094_54864219_54864918
ENSMUSG00000044835.16_160970261_160979033_1	chr1	+	527	2	ISM	ENSMUSG00000044835.16	ENSMUST00000125018.8	673	5	0	11832	0	-11832	5prime_fragment	FALSE	canonical	0	0	junction_1	0	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCATCAAGGTCAAACTT	NA	False	NA	NA	False	ATTAAA	-14	NA	160970260	160979033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_160970289_160978534
ENSMUSG00000044835.16_160970310_160979033_1	chr1	+	600	2	ISM	ENSMUSG00000044835.16	ENSMUST00000052245.9	849	6	-27	12728	0	-11832	5prime_fragment	FALSE	canonical	0	0	junction_1	0	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCATCAAGGTCAAACTT	NA	False	NA	NA	False	ATTAAA	-14	NA	160970309	160979033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_160970411_160978534
ENSMUSG00000044835.16_160970310_160995409_1	chr1	+	1027	7	FSM	ENSMUSG00000044835.16	ENSMUST00000111608.8	3714	7	28	2659	0	0	multi-exon	FALSE	canonical	0	0	junction_1	35.5547308932143	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCGTTCCTGCCAAGTT	NA	False	NA	NA	False	ATTAAA	-14	NA	160970309	160995409	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160970411_160978534_160978888_160982815_160982984_160988236_160988332_160990836_160990976_160991741_160991785_160995281
ENSMUSG00000044881.8_100186307_100189002_1	chr7	+	890	2	FSM	ENSMUSG00000044881.8	ENSMUST00000120454.3	742	2	-132	-16	0	16	multi-exon	FALSE	canonical	2	17	junction_1	0	993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGGTTTCCGCAGTGACAT	7571	False	NA	12	True	AATAAA	-21	NA	100186306	100189002	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_100186473_100188278
ENSMUSG00000044881.8_100186307_100189002_2	chr7	+	817	2	FSM	ENSMUSG00000044881.8	ENSMUST00000054310.4	1391	2	0	574	0	16	multi-exon	FALSE	canonical	3	255	junction_1	0	1027	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGGTTTCCGCAGTGACAT	7571	False	NA	12	True	AATAAA	-21	NA	100186306	100189002	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_100186400_100188278
ENSMUSG00000044894.15_53319780_53321654_1	chr11	-	490	2	FSM	ENSMUSG00000044894.15	ENSMUST00000061326.5	1521	2	0	1031	0	0	multi-exon	FALSE	canonical	3	5710	junction_1	0	52112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2947	False	NA	-8	True	AATAAA	-17	NA	53321654	53319779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_53319978_53321362
ENSMUSG00000044906.7_70585284_70605554_1	chr18	-	3221	9	FSM	ENSMUSG00000044906.7	ENSMUST00000067556.4	2291	9	-3	-927	-3	0	multi-exon	FALSE	canonical	3	72	junction_5	54.5590276672889	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATGTTGTTACGTCTCC	NA	False	NA	-3	True	AATAAA	-17	NA	70605554	70585283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70600557_70600829_70601589_70602519_70602849_70604743_70605051_70605361
ENSMUSG00000044906.7_70585284_70605554_2	chr18	-	3494	8	NIC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	-3	0	intron_retention	FALSE	canonical	3	98	junction_4	41.1701298496463	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATGTTGTTACGTCTCC	NA	False	NA	-3	True	AATAAA	-17	NA	70605554	70585283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70601589_70602519_70602849_70604743_70605051_70605361
ENSMUSG00000044957.4_53786262_53814708_1	chr17	-	2158	6	NNC	ENSMUSG00000044957.4	novel	2476	3	NA	NA	31771	28226	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	519	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACGCAGCGAAGAACGCCG	9414	False	NA	NA	False	NA	NA	NA	53814708	53786261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_53786442_53790861_53791104_53804554_53804707_53805415_53805539_53807403_53807498_53813341
ENSMUSG00000044968.17_21867899_21880616_1	chr5	-	732	4	NNC	ENSMUSG00000044968.17	novel	3954	5	NA	NA	25776	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	59.3127305053477	61	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTGAAAAGATACCTGAAAA	NA	False	NA	NA	False	AATAAA	-19	NA	21880616	21867898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_21868135_21870143_21870361_21875486_21875602_21880452
ENSMUSG00000044968.17_21869938_21878335_1	chr5	-	634	3	NNC	ENSMUSG00000044968.17	novel	3954	5	NA	NA	28057	-2037	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	64	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAAAGTTCCATTTCTTT	NA	False	NA	NA	False	AGTAAA	-25	NA	21878335	21869937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_21870361_21875486_21875602_21878239
ENSMUSG00000044968.17_21869938_21880616_1	chr5	-	702	3	ISM	ENSMUSG00000044968.17	ENSMUST00000115217.8	3954	5	25776	2039	25776	-2037	3prime_fragment	FALSE	canonical	3	114	junction_2	10.5	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAAAGTTCCATTTCTTT	NA	False	NA	NA	False	AGTAAA	-25	NA	21880616	21869937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_21870361_21875486_21875602_21880452
ENSMUSG00000044968.17_21869938_21906392_1	chr5	-	1685	5	FSM	ENSMUSG00000044968.17	ENSMUST00000060899.9	3724	5	2	2037	0	-2037	multi-exon	FALSE	canonical	3	17	junction_4	45.4883226773641	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAAAGTTCCATTTCTTT	NA	False	NA	NA	False	AGTAAA	-25	NA	21906392	21869937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_21870361_21875486_21875602_21880452_21881100_21888153_21888464_21906202
ENSMUSG00000044968.17_21870156_21880616_1	chr5	-	484	3	ISM	ENSMUSG00000044968.17	ENSMUST00000115217.8	3954	5	25776	2257	25776	-2255	3prime_fragment	FALSE	canonical	3	114	junction_2	10.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTCTGCAAGTGTGTGT	NA	False	NA	NA	False	AAGAAA	-34	NA	21880616	21870155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_21870361_21875486_21875602_21880452
ENSMUSG00000044968.17_21870156_21880999_1	chr5	-	867	3	ISM	ENSMUSG00000044968.17	ENSMUST00000115217.8	3954	5	25393	2257	25393	-2255	3prime_fragment	FALSE	canonical	3	114	junction_2	10.5	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTCTGCAAGTGTGTGT	NA	False	NA	NA	False	AAGAAA	-34	NA	21880999	21870155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_21870361_21875486_21875602_21880452
ENSMUSG00000044986.11_78283756_78289746_1	chr15	-	783	2	FSM	ENSMUSG00000044986.11	ENSMUST00000058659.9	1144	2	361	0	306	0	multi-exon	FALSE	canonical	3	371	junction_1	0	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTCTGCCTCCTTGCCC	8445	False	NA	-3	True	AATAAA	-17	NA	78289746	78283755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_78284231_78289438
ENSMUSG00000044986.11_78283756_78290612_1	chr15	-	1649	2	FSM	ENSMUSG00000044986.11	ENSMUST00000058659.9	1144	2	-505	0	-505	0	multi-exon	FALSE	canonical	3	371	junction_1	0	2007	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTCTGCCTCCTTGCCC	7579	False	NA	-3	True	AATAAA	-17	NA	78290612	78283755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_78284231_78289438
ENSMUSG00000044991.11_132533869_132592975_1	chr2	+	1176	3	NNC	ENSMUSG00000044991.11	novel	1076	3	NA	NA	1666	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	2.5	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGACTCAGTCTATTTC	NA	False	NA	27	True	NA	NA	NA	132533868	132592975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_132534052_132572619_132572770_132592132
ENSMUSG00000045010.15_100833954_100834890_1	chrX	-	264	3	ISM	ENSMUSG00000045010.15	ENSMUST00000147742.9	1991	6	3139	0	1979	0	3prime_fragment	FALSE	canonical	3	161	junction_2	73.5	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100834890	100833953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_100834130_100834212_100834255_100834844
ENSMUSG00000045031.19_37362771_37364588_1	chr3	-	974	4	FSM	ENSMUSG00000045031.19	ENSMUST00000140956.8	2981	4	2007	0	1981	0	multi-exon	TRUE	canonical	3	18	junction_2	3.29983164553722	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTATCTTCTGGTAGT	NA	False	NA	NA	False	AATAAA	-21	NA	37364588	37362770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_37363331_37363493_37363632_37364085_37364215_37364441
ENSMUSG00000045098.20_3818169_3858835_1	chr19	+	2839	10	FSM	ENSMUSG00000045098.20	ENSMUST00000113970.8	2975	10	136	0	0	0	multi-exon	FALSE	canonical	3	179	junction_9	36.6093828625975	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTCTTGAGTCTGG	NA	False	NA	56	True	AATAAA	-15	NA	3818168	3858835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916_3855054_3857224
ENSMUSG00000045100.12_94477314_94580843_1	chr6	+	1110	10	FSM	ENSMUSG00000045100.12	ENSMUST00000061118.11	1922	10	2	810	0	0	multi-exon	FALSE	canonical	3	22	junction_5	7.6610285226392	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGCTTTTTATTAGCAT	NA	False	NA	NA	False	AATAAA	-32	NA	94477313	94580843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701_94512750_94553314_94553360_94569392_94569463_94575360_94575426_94576159_94576234_94580532
ENSMUSG00000045100.12_94477314_94581035_1	chr6	+	1302	10	FSM	ENSMUSG00000045100.12	ENSMUST00000061118.11	1922	10	2	618	0	0	multi-exon	FALSE	canonical	3	22	junction_5	7.6610285226392	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGCATAGCATGCATTCT	NA	False	NA	NA	False	AAAAAG	-11	NA	94477313	94581035	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701_94512750_94553314_94553360_94569392_94569463_94575360_94575426_94576159_94576234_94580532
ENSMUSG00000045100.12_94477350_94513020_1	chr6	+	780	5	ISM	ENSMUSG00000045100.12	ENSMUST00000061118.11	1922	10	38	68633	0	25182	5prime_fragment	FALSE	canonical	3	34	junction_4	5.93190525885234	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAGAAGCTGTTGAGTTG	NA	False	NA	NA	False	NA	NA	NA	94477349	94513020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701
ENSMUSG00000045102.13_34306646_34326781_1	chr5	-	359	3	NNC	ENSMUSG00000079555.3	novel	2073	5	NA	NA	-4	4578	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	0.5	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTTGTCTGTATGGGTT	9416	False	NA	NA	False	TATAAA	-21	NA	34326781	34306645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_34306812_34307060_34307206_34326733
ENSMUSG00000045103.20_84091925_84246192_1	chrX	+	2047	17	NIC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	0	88	combination_of_known_junctions	FALSE	canonical	3	247	junction_13	44.1996535619907	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCGCATGGTTTTTATAA	NA	False	NA	7	True	AATAAA	-18	NA	84091924	84246192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076
ENSMUSG00000045106.13_104830001_104847388_1	chr2	+	1243	11	NNC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	7466	-808	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCGGTGCCGTACAGGGT	8631	False	NA	NA	False	NA	NA	NA	104830000	104847388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_104830187_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843282_104843536_104843667_104844089_104844229_104845114_104845248_104847290
ENSMUSG00000045106.13_104830001_104847388_2	chr2	+	1241	11	NNC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	7466	-808	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1401	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCGGTGCCGTACAGGGT	8631	False	NA	NA	False	NA	NA	NA	104830000	104847388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_104830187_104830591_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
ENSMUSG00000045106.13_104830001_104847388_3	chr2	+	1236	11	NNC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	7466	-808	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	761	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCGGTGCCGTACAGGGT	8631	False	NA	NA	False	NA	NA	NA	104830000	104847388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_104830187_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843291_104843542_104843667_104844089_104844219_104845114_104845248_104847290
ENSMUSG00000045106.13_104830001_104847388_4	chr2	+	1236	11	NNC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	7466	-808	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1357	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCGGTGCCGTACAGGGT	8631	False	NA	NA	False	NA	NA	NA	104830000	104847388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_104830187_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843205_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
ENSMUSG00000045106.13_104830001_104847388_5	chr2	+	1239	11	NNC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	7466	-808	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1793	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCGGTGCCGTACAGGGT	8631	False	NA	NA	False	NA	NA	NA	104830000	104847388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_104830187_104830586_104830641_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
ENSMUSG00000045106.13_104830001_104847425_1	chr2	+	1139	10	NIC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	7466	-771	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTCAGCCACAGAGGGCGG	8631	False	NA	NA	False	NA	NA	NA	104830000	104847425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_104830187_104830586_104830648_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
ENSMUSG00000045106.13_104830001_104847425_2	chr2	+	1288	11	NNC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	7466	-771	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTCAGCCACAGAGGGCGG	8631	False	NA	NA	False	NA	NA	NA	104830000	104847425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_104830187_104830586_104830648_104831610_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
ENSMUSG00000045107.6_20127192_20133251_1	chr14	-	827	2	FSM	ENSMUSG00000045107.6	ENSMUST00000059666.6	2315	2	0	1488	0	336	multi-exon	FALSE	canonical	3	53	junction_1	0	320	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCTGGTTTGTCTCATT	5305	False	NA	NA	False	TATAAA	-14	NA	20133251	20127191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_20127713_20132945
ENSMUSG00000045128.10_71348023_71350056_1	chr8	-	594	5	NNC	ENSMUSG00000045128.10	novel	1260	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	11696.6700683357	118059	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350056	71348022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_71348143_71348243_71348354_71348559_71348690_71348776_71348957_71350002
ENSMUSG00000045128.10_71348023_71350056_2	chr8	-	588	5	NNC	ENSMUSG00000045128.10	novel	1260	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	11696.6700683357	84660	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350056	71348022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_71348152_71348258_71348354_71348559_71348690_71348776_71348957_71350002
ENSMUSG00000045128.10_71348023_71350056_3	chr8	-	587	5	NNC	ENSMUSG00000045128.10	novel	1260	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	11696.6700683357	38577	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350056	71348022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_71348143_71348250_71348354_71348559_71348690_71348776_71348957_71350002
ENSMUSG00000045128.10_71348023_71350056_4	chr8	-	596	5	NNC	ENSMUSG00000045128.10	novel	1260	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	1194	junction_1	11261.4431440868	233357	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350056	71348022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_71348152_71348250_71348354_71348559_71348690_71348776_71348957_71350002
ENSMUSG00000045128.10_71348023_71350056_5	chr8	-	592	5	NNC	ENSMUSG00000045128.10	novel	1260	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9032.33201822763	18028	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350056	71348022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_71348143_71348243_71348348_71348555_71348690_71348776_71348957_71350002
ENSMUSG00000045128.10_71348023_71350056_6	chr8	-	597	5	NNC	ENSMUSG00000045128.10	novel	1260	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	12204.1210048082	213467	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350056	71348022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_71348152_71348243_71348348_71348559_71348690_71348776_71348957_71350002
ENSMUSG00000045136.7_34311204_34314337_1	chr13	-	1709	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	0	473	0	-473	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	2934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	0	True	CATAAA	-15	NA	34314337	34311203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
ENSMUSG00000045136.7_34311204_34314449_1	chr13	-	1821	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	-112	473	0	-473	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	2958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	0	True	CATAAA	-15	NA	34314449	34311203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
ENSMUSG00000045136.7_34311942_34314337_1	chr13	-	971	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	0	1211	0	502	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACGGTGCCCGAGCTGACC	NA	False	NA	NA	False	NA	NA	NA	34314337	34311941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
ENSMUSG00000045193.14_80003674_80007489_1	chr10	+	1476	6	FSM	ENSMUSG00000045193.14	ENSMUST00000140774.2	912	6	-46	-518	0	0	multi-exon	FALSE	canonical	3	335	junction_5	19.6936538001459	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGCTCTGACCATTTCCC	6191	False	NA	NA	False	ATTAAA	-18	NA	80003673	80007489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527
ENSMUSG00000045193.14_80003674_80008620_1	chr10	+	763	7	NIC	ENSMUSG00000045193.14	novel	834	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	5	junction_5	159.6200349441	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCGACTCTGTGGCTTGG	6191	False	NA	NA	False	AATAAA	-17	NA	80003673	80008620	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80008247_80008347_80008470
ENSMUSG00000045237.6_69429483_69433023_1	chrX	+	1088	3	NNC	ENSMUSG00000045237.6	novel	1094	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	173	1852	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAAGTGTCTAGCTCCCT	NA	False	NA	14	True	AATAAA	-21	NA	69429482	69433023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_69429758_69431505_69431773_69432477
ENSMUSG00000045237.6_69429609_69433023_1	chrX	+	968	3	FSM	ENSMUSG00000045237.6	ENSMUST00000053981.6	1094	3	126	0	126	0	multi-exon	FALSE	canonical	3	343	junction_1	1.5	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAAGTGTCTAGCTCCCT	NA	False	NA	14	True	AATAAA	-21	NA	69429608	69433023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_69429758_69431499_69431773_69432477
ENSMUSG00000045251.14_127018139_127021199_1	chr7	-	1168	3	NNC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	17	637	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6925	False	NA	-4	True	ATTAAA	-17	NA	127021199	127018138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_127018814_127020576_127020691_127020820
ENSMUSG00000045251.14_127018139_127021199_2	chr7	-	1394	3	ISM	ENSMUSG00000045251.14	ENSMUST00000148483.8	1302	4	12	0	0	0	intron_retention	FALSE	canonical	3	32	junction_2	11.5	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6925	False	NA	-4	True	ATTAAA	-17	NA	127021199	127018138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_127018814_127019181_127019278_127020576
ENSMUSG00000045251.14_127018139_127021199_3	chr7	-	1264	4	NNC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	22.553639765383	606	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6925	False	NA	-4	True	ATTAAA	-17	NA	127021199	127018138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_127018814_127019181_127019278_127020576_127020691_127020820
ENSMUSG00000045251.14_127018139_127021199_4	chr7	-	1054	2	NNC	ENSMUSG00000045251.14	novel	1298	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	436	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6925	False	NA	-4	True	ATTAAA	-17	NA	127021199	127018138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_127018814_127020820
ENSMUSG00000045251.14_127018139_127021199_5	chr7	-	894	2	FSM	ENSMUSG00000045251.14	ENSMUST00000126756.2	338	2	-177	-379	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6925	False	NA	-4	True	ATTAAA	-17	NA	127021199	127018138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127018814_127020980
ENSMUSG00000045259.5_171186283_171188366_1	chr1	-	1289	4	FSM	ENSMUSG00000045259.5	ENSMUST00000061878.5	1558	4	0	269	0	-269	multi-exon	FALSE	canonical	3	17	junction_1	1.88561808316413	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTCTCTGAATCCTTT	7871	False	NA	NA	False	ATTAAA	-14	NA	171188366	171186282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171186549_171187022_171187222_171187309_171187470_171187702
ENSMUSG00000045273.9_100896428_100912317_1	chr13	-	915	9	FSM	ENSMUSG00000045273.9	ENSMUST00000075550.4	1251	9	90	246	-26	-246	multi-exon	FALSE	canonical	3	285	junction_6	26.2865816530031	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGCCGTGGAGGCCTTG	NA	False	NA	-25	True	ATTAAA	-19	NA	100912317	100896427	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
ENSMUSG00000045273.9_100896521_100912407_1	chr13	-	912	9	FSM	ENSMUSG00000045273.9	ENSMUST00000075550.4	1251	9	0	339	0	-339	multi-exon	FALSE	canonical	3	285	junction_6	26.2865816530031	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTCTGCTGCTTCAGTTT	NA	False	NA	-4	True	TTTAAA	-40	NA	100912407	100896520	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
ENSMUSG00000045302.14_31107410_31112435_1	chr5	-	1276	9	NNC	ENSMUSG00000045302.14	novel	6300	9	NA	NA	1092	787	intron_retention	FALSE	non_canonical	0	0	junction_1	0	373	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCGGTTTGTCGTGCAC	NA	False	NA	NA	False	NA	NA	NA	31112435	31107409	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_31107517_31110228_31110390_31110686_31110870_31111010_31111057_31111222_31111336_31111434_31111610_31111748_31111798_31111877_31112044_31112159
ENSMUSG00000045302.14_31112387_31117476_1	chr5	-	1881	9	FSM	ENSMUSG00000045302.14	ENSMUST00000074840.12	6300	9	229	4190	120	0	multi-exon	TRUE	canonical	3	205	junction_7	28.1735691739616	783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAGCAGTCCTCTTGTC	NA	False	NA	-8	True	AATAAA	-21	NA	31117476	31112386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31117314
ENSMUSG00000045302.14_31112387_31117624_1	chr5	-	2029	9	FSM	ENSMUSG00000045302.14	ENSMUST00000074840.12	6300	9	81	4190	0	0	multi-exon	FALSE	canonical	3	205	junction_7	28.1735691739616	905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAGCAGTCCTCTTGTC	NA	False	NA	-8	True	AATAAA	-21	NA	31117624	31112386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31117314
ENSMUSG00000045302.14_31112387_31117624_2	chr5	-	2315	8	NIC	ENSMUSG00000045302.14	novel	1869	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	234	junction_6	22.518926280272	986	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAGCAGTCCTCTTGTC	NA	False	NA	-8	True	AATAAA	-21	NA	31117624	31112386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116757_31117314
ENSMUSG00000045328.12_134918298_134938814_1	chr3	+	1767	16	ISM	ENSMUSG00000045328.12	ENSMUST00000062893.12	7910	46	0	40558	0	-13592	5prime_fragment	FALSE	canonical	3	163	junction_13	22.2784400012409	352	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGATCAAGAGGTAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	134918297	134938814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_134918476_134920864_134920957_134922092_134922183_134922306_134922426_134923013_134923134_134923793_134923876_134924234_134924303_134924384_134924451_134926040_134926093_134927988_134928077_134928930_134929061_134930717_134930838_134934517_134934677_134935808_134935966_134937125_134937215_134938657
ENSMUSG00000045377.6_69288059_69289060_1	chr11	-	868	2	FSM	ENSMUSG00000045377.6	ENSMUST00000050140.6	1582	2	0	714	0	-714	multi-exon	FALSE	canonical	3	22	junction_1	0	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACTCTGTGAATACAGGG	NA	False	NA	NA	False	AATAAA	-19	NA	69289060	69288058	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69288708_69288841
ENSMUSG00000045391.5_63079589_63119456_1	chr10	-	1868	9	NIC	ENSMUSG00000045391.5	novel	464	2	NA	NA	-39524	-742	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGGCGGTGGTTTCGC	NA	False	NA	NA	False	NA	NA	NA	63119456	63079588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959
ENSMUSG00000045391.5_63079589_63153657_1	chr10	-	4003	25	NIC	ENSMUSG00000045391.5	novel	464	2	NA	NA	-73725	-742	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	352	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGGCGGTGGTTTCGC	NA	False	NA	NA	False	NA	NA	NA	63153657	63079588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
ENSMUSG00000045391.5_63079702_63153585_1	chr10	-	3818	25	NIC	ENSMUSG00000045391.5	novel	464	2	NA	NA	-73653	-855	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	190	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGACCCGGATGGAGCGGG	NA	False	NA	NA	False	NA	NA	NA	63153585	63079701	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
ENSMUSG00000045394.10_87953729_87958332_1	chr17	+	562	3	ISM	ENSMUSG00000045394.10	ENSMUST00000234623.2	1745	9	9619	225	9619	-202	3prime_fragment	FALSE	canonical	3	244	junction_1	1.5	261	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTAAGTTTGTTTGAAT	NA	False	NA	27	True	AATAAA	-35	NA	87953728	87958332	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_87953769_87957041_87957087_87957855
ENSMUSG00000045394.10_87953729_87958561_1	chr17	+	791	3	ISM	ENSMUSG00000045394.10	ENSMUST00000234623.2	1745	9	9619	-4	9619	4	3prime_fragment	FALSE	canonical	3	244	junction_1	1.5	287	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGGTAAGTCTTGTGTTA	NA	False	NA	NA	False	AAGAAA	-1	NA	87953728	87958561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_87953769_87957041_87957087_87957855
ENSMUSG00000045410.19_4642489_4659137_1	chr13	-	1687	10	FSM	ENSMUSG00000045410.19	ENSMUST00000091848.7	3463	10	36	1740	-4	-1733	multi-exon	FALSE	canonical	3	141	junction_4	13.8082101181387	897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCTGTGTAAAGACACTG	NA	False	NA	NA	False	AATAAA	-20	NA	4659137	4642488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_4643298_4643560_4643644_4645069_4645154_4645658_4645732_4647483_4647582_4648768_4648892_4651216_4651295_4652679_4652797_4657389_4657558_4659083
ENSMUSG00000045410.19_4642889_4659137_1	chr13	-	1282	10	NNC	ENSMUSG00000045410.19	novel	3463	10	NA	NA	-4	-2133	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	48.8833330176409	690	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCTTGACAGAAGTGTTT	NA	False	NA	NA	False	ATTAAA	-24	NA	4659137	4642888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_4643298_4643560_4643644_4645069_4645154_4645658_4645732_4647483_4647582_4648768_4648892_4651216_4651295_4652679_4652797_4657394_4657558_4659083
ENSMUSG00000045410.19_4642889_4659137_2	chr13	-	1287	10	FSM	ENSMUSG00000045410.19	ENSMUST00000091848.7	3463	10	36	2140	-4	-2133	multi-exon	FALSE	canonical	3	141	junction_4	13.8082101181387	761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCTTGACAGAAGTGTTT	NA	False	NA	NA	False	ATTAAA	-24	NA	4659137	4642888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_4643298_4643560_4643644_4645069_4645154_4645658_4645732_4647483_4647582_4648768_4648892_4651216_4651295_4652679_4652797_4657389_4657558_4659083
ENSMUSG00000045411.17_43896211_43901739_2	chr7	+	1898	6	FSM	ENSMUSG00000045411.17	ENSMUST00000137702.8	784	6	59	-1173	0	0	multi-exon	FALSE	canonical	3	108	junction_1	258.311904487579	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896210	43901739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_43896233_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUSG00000045435.10_21087505_21091475_1	chr5	+	438	2	FSM	ENSMUSG00000045435.10	ENSMUST00000115259.3	1147	2	316	393	0	-393	multi-exon	FALSE	canonical	3	465	junction_1	0	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCATTGCAATGTTACTTA	NA	False	NA	NA	False	ATTAAA	-15	NA	21087504	21091475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_21087654_21091186
ENSMUSG00000045435.10_21087505_21091868_1	chr5	+	831	2	FSM	ENSMUSG00000045435.10	ENSMUST00000115259.3	1147	2	316	0	0	0	multi-exon	FALSE	canonical	3	465	junction_1	0	1301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCCACATGCCTCTTAC	NA	False	NA	8	True	AATAAA	-18	NA	21087504	21091868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_21087654_21091186
ENSMUSG00000045438.13_139323349_139330933_1	chr5	-	1001	3	FSM	ENSMUSG00000045438.13	ENSMUST00000049630.13	2461	3	55	1405	-1	228	multi-exon	FALSE	canonical	3	183	junction_2	1.5	957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTATTTATTTATTTA	NA	False	NA	-11	True	TTTAAA	-15	NA	139330933	139323348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_139324131_139328317_139328430_139330826
ENSMUSG00000045438.13_139323577_139330933_1	chr5	-	885	4	NIC	ENSMUSG00000045438.13	novel	696	3	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	85.6076320585184	767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACTGTTTGGCTTTTGAC	NA	False	NA	-18	True	AATACA	-14	NA	139330933	139323576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_139324131_139328317_139328430_139328875_139328988_139330826
ENSMUSG00000045438.13_139323577_139330933_2	chr5	-	773	3	FSM	ENSMUSG00000045438.13	ENSMUST00000049630.13	2461	3	55	1633	-1	0	multi-exon	FALSE	canonical	3	183	junction_2	1.5	837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACTGTTTGGCTTTTGAC	NA	False	NA	-18	True	AATACA	-14	NA	139330933	139323576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_139324131_139328317_139328430_139330826
ENSMUSG00000045464.6_94242027_94268481_1	chr2	+	3741	14	NNC	ENSMUSG00000045464.6	novel	2040	2	NA	NA	5531	26454	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	543	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTACCGCCCCCAACGTCT	NA	False	NA	NA	False	NA	NA	NA	94242026	94268481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_94244132_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
ENSMUSG00000045467.14_79906440_79908943_1	chr7	+	969	4	NNC	ENSMUSG00000045467.14	novel	3010	15	NA	NA	9304	0	at_least_one_novel_splicesite	TRUE	canonical	2	7	junction_1	4.64279609239471	55	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGCCGTTTTCACTATT	NA	False	NA	NA	False	AGTAAA	-20	NA	79906439	79908943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_79906489_79906592_79906779_79907924_79908106_79908390
ENSMUSG00000045467.14_79906440_79908943_2	chr7	+	1073	3	ISM	ENSMUSG00000045467.14	ENSMUST00000107381.8	2392	13	10137	0	9304	0	3prime_fragment	FALSE	canonical	2	15	junction_2	1.5	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGCCGTTTTCACTATT	NA	False	NA	NA	False	AGTAAA	-20	NA	79906439	79908943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_79906779_79907924_79908106_79908390
ENSMUSG00000045503.17_164303229_164306857_1	chr2	+	869	3	ISM	ENSMUSG00000045503.17	ENSMUST00000072452.11	1606	4	338	571	0	-571	3prime_fragment	FALSE	canonical	3	303	junction_1	8.5	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTCTTCTCGTTGTCTGT	NA	False	NA	7	True	AATAAA	-1	NA	164303228	164306857	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_164303450_164305220_164305289_164306277
ENSMUSG00000045519.16_20263877_20279253_1	chr9	-	562	3	NNC	ENSMUSG00000045519.16	novel	620	3	NA	NA	-12311	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	14.5	557	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTTCTTGTCATATATT	NA	False	NA	NA	False	NA	NA	NA	20279253	20263876	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_20264138_20265359_20265546_20279138
ENSMUSG00000045538.7_106738139_106780453_1	chr8	-	1862	16	Genic_Genomic	ENSMUSG00000045538.7	novel	2262	1	NA	NA	-41939	-1886	multi-exon	FALSE	non_canonical	0	0	junction_1	0	662	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCGCGCCAGCCACCGTA	NA	False	NA	NA	False	NA	NA	NA	106780453	106738138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106758329_106758374_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
ENSMUSG00000045573.10_4133531_4138829_1	chr4	-	1312	3	FSM	ENSMUSG00000045573.10	ENSMUST00000133567.2	721	3	-10	-581	-10	0	multi-exon	FALSE	non_canonical	0	0	junction_2	3.5	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGTAAGAACTGGCTGT	178	False	NA	-7	True	AATAAA	-24	NA	4138829	4133530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_4134508_4138005_4138146_4138634
ENSMUSG00000045576.17_104730249_104771716_1	chr3	+	2934	10	Genic_Genomic	ENSMUSG00000045576.17	novel	2455	1	NA	NA	-41072	-2059	multi-exon	FALSE	non_canonical	0	0	junction_1	0	802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGGCCGGCGCGAGGCAG	NA	False	NA	NA	False	NA	NA	NA	104730248	104771716	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_+_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104771655
ENSMUSG00000045576.17_104732142_104771716_1	chr3	+	1041	10	Genic_Genomic	ENSMUSG00000045576.17	novel	2455	1	NA	NA	-39179	-2059	multi-exon	FALSE	non_canonical	0	0	junction_1	0	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGGCCGGCGCGAGGCAG	NA	False	NA	NA	False	NA	NA	NA	104732141	104771716	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_+_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104771655
ENSMUSG00000045576.17_104772396_104834176_1	chr3	+	1947	14	FSM	ENSMUSG00000045576.17	ENSMUST00000059271.13	5728	14	577	3204	0	0	multi-exon	FALSE	canonical	3	59	junction_11	6.94526359402813	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTAGTGTATTTTCTTT	657	False	NA	29	True	AATACA	-40	NA	104772395	104834176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_104772625_104775339_104775423_104778161_104778328_104780837_104780893_104782142_104782259_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826666_104826818_104829502_104829596_104833745
ENSMUSG00000045594.11_114230176_114256064_1	chr9	+	746	6	NNC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	0	-47381	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	138.373985994478	122	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATACTGAAAAGTCGTGAGC	NA	False	NA	NA	False	TATAAA	-17	NA	114230175	114256064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114255957
ENSMUSG00000045608.8_95522252_95530749_1	chr15	-	914	3	NNC	ENSMUSG00000045608.8	novel	477	3	NA	NA	-40	367	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	4.5	130	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTTCTCTCCAAGTTTTA	NA	False	NA	-12	True	ATTAAA	-15	NA	95530749	95522251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_95522899_95530158_95530347_95530670
ENSMUSG00000045608.8_95522252_95530749_2	chr15	-	899	3	NNC	ENSMUSG00000045608.8	novel	477	3	NA	NA	-40	367	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	12.5	132	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTTCTCTCCAAGTTTTA	NA	False	NA	-12	True	ATTAAA	-15	NA	95530749	95522251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_95522899_95530158_95530347_95530685
ENSMUSG00000045624.16_140009826_140012484_1	chr2	-	638	2	ISM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	0	48023	0	-8543	5prime_fragment	FALSE	canonical	3	434	junction_1	0	872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGGGGTACCACTGACC	6977	False	NA	NA	False	AATAAA	-6	NA	140012484	140009825	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_140010376_140012396
ENSMUSG00000045624.16_140010026_140012484_1	chr2	-	530	3	NNC	ENSMUSG00000045624.16	novel	3396	14	NA	NA	0	-8743	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	4	308	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAAAGTCAATTGAAAA	6977	False	NA	NA	False	AAGAAA	-31	NA	140012484	140010025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_140010376_140010983_140011076_140012396
ENSMUSG00000045624.16_140010026_140012484_2	chr2	-	438	2	ISM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	0	48223	0	-8743	5prime_fragment	FALSE	canonical	3	434	junction_1	0	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAAAGTCAATTGAAAA	6977	False	NA	NA	False	AAGAAA	-31	NA	140012484	140010025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_140010376_140012396
ENSMUSG00000045636.17_41445954_41455414_1	chr8	-	1281	7	ISM	ENSMUSG00000045636.17	ENSMUST00000051379.14	3964	10	39489	1865	-2172	-1865	3prime_fragment	TRUE	canonical	3	117	junction_2	9.10433352249844	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGCTTGGCCTGTATTAA	NA	False	NA	-4	True	ATTAAA	-15	NA	41455414	41445953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41452754_41453797_41453904_41455341
ENSMUSG00000045664.6_5967589_5974844_1	chr19	-	1486	2	FSM	ENSMUSG00000045664.6	ENSMUST00000055458.6	3411	2	0	1925	0	-1925	multi-exon	FALSE	canonical	3	11	junction_1	0	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGCATCCTGTCCCCTT	NA	False	NA	-13	True	AATAAA	-18	NA	5974844	5967588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5969022_5974791
ENSMUSG00000045665.6_102187994_102190189_1	chr15	+	1649	2	FSM	ENSMUSG00000045665.6	ENSMUST00000051341.6	1754	2	105	0	105	0	multi-exon	FALSE	canonical	3	355	junction_1	0	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCCTCTCCTGTACCCA	NA	False	NA	27	True	AATAAA	-23	NA	102187993	102190189	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102188065_102188611
ENSMUSG00000045690.9_75677370_75678782_2	chr12	-	701	3	NNC	ENSMUSG00000045690.9	novel	2979	2	NA	NA	37519	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTGGGTATCTTGTCTT	NA	False	NA	-2	True	AATAAA	-17	NA	75678782	75677369	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_75677524_75677545_75677662_75678351
ENSMUSG00000045690.9_75678171_75716312_1	chr12	-	2179	2	FSM	ENSMUSG00000045690.9	ENSMUST00000062370.9	2979	2	-1	801	-1	0	multi-exon	FALSE	canonical	3	148	junction_1	0	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGC	6409	False	NA	NA	False	NA	NA	NA	75716312	75678170	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_75680283_75716245
ENSMUSG00000045691.15_55332546_55336443_1	chr14	+	2525	2	FSM	ENSMUSG00000045691.15	ENSMUST00000050575.9	2830	2	305	0	305	0	multi-exon	FALSE	canonical	3	37	junction_1	0	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGGTCTTTATTTCCGTT	NA	False	NA	7	True	AATAAA	-18	NA	55332545	55336443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55333464_55334836
ENSMUSG00000045699.5_146914649_146994047_1	chr4	-	651	4	NNC	ENSMUSG00000045699.5	novel	1296	4	NA	NA	0	61504	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_1	42.4996732013579	455	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTTTTCTACCATTAGT	NA	False	NA	NA	False	AATACA	-22	NA	146994047	146914648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_146914904_146978205_146978333_146982168_146982273_146993882
ENSMUSG00000045699.5_146976863_146994047_1	chr4	-	649	4	FSM	ENSMUSG00000045699.5	ENSMUST00000238583.2	1296	4	-63	710	0	0	multi-exon	FALSE	canonical	3	153	junction_2	62.9938268580519	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTGTTTTCTACCATTA	NA	False	NA	-2	True	AATACA	-20	NA	146994047	146976862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_146977116_146978205_146978333_146982168_146982273_146993882
ENSMUSG00000045699.5_146977013_146994047_1	chr4	-	499	4	FSM	ENSMUSG00000045699.5	ENSMUST00000238583.2	1296	4	-63	860	0	-150	multi-exon	FALSE	canonical	3	153	junction_2	62.9938268580519	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCTTAGCAATGTCATTC	NA	False	NA	NA	False	NA	NA	NA	146994047	146977012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_146977116_146978205_146978333_146982168_146982273_146993882
ENSMUSG00000045744.12_24694276_24698052_1	chr17	+	1609	9	NIC	ENSMUSG00000045744.12	novel	849	6	NA	NA	1335	3609	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGGCCGAGCGTAGAGCT	296	False	NA	NA	False	NA	NA	NA	24694275	24698052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293_24697453_24697985
ENSMUSG00000045751.17_24496465_24503413_1	chr4	+	1140	6	NIC	ENSMUSG00000045751.17	novel	1350	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	154.538797717596	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTCATTCTCGTTGAT	-2	True	NA	9	True	AATAAA	-18	NA	24496464	24503413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_24496635_24496841_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931
ENSMUSG00000045751.17_24496465_24503413_2	chr4	+	1150	6	NNC	ENSMUSG00000045751.17	novel	1350	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	143.521426971724	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTCATTCTCGTTGAT	-2	True	NA	9	True	AATAAA	-18	NA	24496464	24503413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_24496635_24496831_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931
ENSMUSG00000045751.17_24596217_24602950_1	chr4	+	727	4	ISM	ENSMUSG00000045751.17	ENSMUST00000154349.9	3603	19	91055	-1	17369	0	3prime_fragment	FALSE	canonical	3	213	junction_1	10.7806410858642	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTCTCTGTGAATATTTA	NA	False	NA	NA	False	ATTAAA	-23	NA	24596216	24602950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_24596302_24598785_24598883_24600154_24600323_24602573
ENSMUSG00000045752.14_142622986_142624824_1	chr7	+	1483	3	FSM	ENSMUSG00000045752.14	ENSMUST00000177841.8	1364	3	-119	0	0	0	multi-exon	FALSE	canonical	3	124	junction_2	18	706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142622985	142624824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_142623251_142623491_142623558_142623672
ENSMUSG00000045752.14_142623161_142624824_1	chr7	+	1549	2	FSM	ENSMUSG00000045752.14	ENSMUST00000133410.3	1091	2	83	-541	0	0	multi-exon	FALSE	canonical	3	124	junction_1	0	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623160	142624824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_142623558_142623672
ENSMUSG00000045752.14_142623161_142624824_2	chr7	+	1579	2	FSM	ENSMUSG00000045752.14	ENSMUST00000137856.2	981	2	-120	-478	0	0	multi-exon	FALSE	canonical	3	158	junction_1	0	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623160	142624824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_142623588_142623672
ENSMUSG00000045752.14_142623161_142624824_3	chr7	+	1338	3	FSM	ENSMUSG00000045752.14	ENSMUST00000060433.10	1519	3	175	6	0	0	multi-exon	FALSE	canonical	3	158	junction_2	1	855	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623160	142624824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_142623251_142623491_142623588_142623672
ENSMUSG00000045752.14_142623161_142624824_4	chr7	+	809	4	NIC	ENSMUSG00000045752.14	novel	895	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_3	63.0202789231812	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623160	142624824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_142623251_142623491_142623558_142623672_142624030_142624528
ENSMUSG00000045752.14_142623161_142624824_5	chr7	+	1423	2	ISM	ENSMUSG00000045752.14	ENSMUST00000105920.8	895	4	56	0	0	0	intron_retention	FALSE	canonical	3	160	junction_1	0	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623160	142624824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_142623251_142623491
ENSMUSG00000045854.5_32800282_32802267_1	chr4	+	1320	3	FSM	ENSMUSG00000045854.5	ENSMUST00000062802.5	465	3	29	-884	0	708	multi-exon	FALSE	canonical	3	270	junction_2	3	1827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATCATCATTAAGGAGCAT	14	True	NA	NA	False	NA	NA	NA	32800281	32802267	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_32800336_32800609_32800751_32801142
ENSMUSG00000045896.15_83785910_83808695_1	chr6	-	651	5	NNC	ENSMUSG00000045896.15	novel	649	4	NA	NA	0	-272	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	34.6229692545281	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGCATTGTTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	83808695	83785909	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83786099_83786880_83787058_83791703_83791852_83808252_83808311_83808616
ENSMUSG00000045942.14_51144478_51145422_1	chr11	-	639	2	ISM	ENSMUSG00000045942.14	ENSMUST00000231433.2	855	4	1669	-142	1669	0	3prime_fragment	FALSE	canonical	2	4	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCTCCTGCCTCATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	51145422	51144477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_51144880_51145185
ENSMUSG00000045948.9_28439066_28440981_1	chr7	-	663	2	NNC	ENSMUSG00000045948.9	novel	883	2	NA	NA	214	0	intron_retention	FALSE	canonical	0	0	junction_1	0	8364	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGTGCGGTGTCTGTC	1908	False	NA	-5	True	AATAAA	-24	NA	28440981	28439065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_28439659_28440911
ENSMUSG00000045948.9_28439066_28441263_1	chr7	-	701	3	NNC	ENSMUSG00000045948.9	novel	722	3	NA	NA	-18	0	intron_retention	FALSE	canonical	3	18	junction_2	460.5	9583	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGTGCGGTGTCTGTC	1626	False	NA	-5	True	AATAAA	-24	NA	28441263	28439065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_28439665_28440911_28440980_28441229
ENSMUSG00000045968.8_153775690_153784031_1	chr1	-	1354	7	NIC	ENSMUSG00000045968.8	novel	1851	3	NA	NA	-8057	-2836	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGTCGCTGGCTGCTCGGT	6775	False	NA	NA	False	NA	NA	NA	153784031	153775689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_153775806_153778679_153778859_153780282_153780445_153782094_153782242_153782765_153782894_153783031_153783232_153783609
ENSMUSG00000045969.9_11606063_11612477_1	chr8	+	1202	2	NNC	ENSMUSG00000045969.9	novel	1866	2	NA	NA	0	429	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCCAGGTTGCTGAAGTA	NA	False	NA	NA	False	NA	NA	NA	11606062	11612477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_11606205_11611417
ENSMUSG00000045969.9_11608429_11611914_1	chr8	+	635	2	FSM	ENSMUSG00000045969.9	ENSMUST00000209565.2	1971	2	0	1336	0	-134	multi-exon	FALSE	canonical	3	111	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTCTGTGCAACCAGGT	NA	False	NA	NA	False	NA	NA	NA	11608428	11611914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_11608567_11611417
ENSMUSG00000045969.9_11608429_11612477_1	chr8	+	1198	2	FSM	ENSMUSG00000045969.9	ENSMUST00000209565.2	1971	2	0	773	0	429	multi-exon	FALSE	canonical	3	111	junction_1	0	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCCAGGTTGCTGAAGTA	NA	False	NA	NA	False	NA	NA	NA	11608428	11612477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_11608567_11611417
ENSMUSG00000045973.19_45398422_45408761_1	chr4	-	1825	2	FSM	ENSMUSG00000045973.19	ENSMUST00000132815.3	1005	2	-1	-819	0	819	multi-exon	FALSE	canonical	3	9	junction_1	0	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGGGGTTTTAATGCAA	-17	True	NA	NA	False	AATAAA	-19	NA	45408761	45398421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_45400180_45408694
ENSMUSG00000045973.19_45398422_45408761_2	chr4	-	1934	3	FSM	ENSMUSG00000045973.19	ENSMUST00000107796.8	4433	3	0	2499	0	819	multi-exon	FALSE	canonical	3	68	junction_2	5.5	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGGGGTTTTAATGCAA	-17	True	NA	NA	False	AATAAA	-19	NA	45408761	45398421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_45400180_45404726_45404836_45408694
ENSMUSG00000045980.14_115116426_115119970_1	chr11	+	346	3	Genic_Genomic	ENSMUSG00000045980.14	novel	4561	10	NA	NA	38049	-16620	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTATTGTGCTTCTGACCT	NA	False	NA	NA	False	NA	NA	NA	115116425	115119970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr11_+_115116607_115119216_115119323_115119911
ENSMUSG00000045983.17_20504670_20511633_1	chr16	+	1857	11	ISM	ENSMUSG00000045983.17	ENSMUST00000132320.8	5004	26	7644	-2	1830	0	3prime_fragment	FALSE	canonical	3	1581	junction_2	98.883820719064	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	5771	False	NA	16	True	ATTAAA	-16	NA	20504669	20511633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
ENSMUSG00000045996.13_36174179_36177156_1	chr15	+	463	4	NNC	ENSMUSG00000045996.13	novel	601	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	346.094720496507	7858	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTCTATTCAATGTCTT	132	False	NA	NA	False	ATTAAA	-15	NA	36174178	36177156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_36174222_36175132_36175203_36175529_36175623_36176899
ENSMUSG00000045996.13_36174179_36177157_1	chr15	+	464	4	NNC	ENSMUSG00000045996.13	novel	601	4	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	332.667334668668	8352	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTCTATTCAATGTCTTG	132	False	NA	NA	False	ATTAAA	-16	NA	36174178	36177157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_36174228_36175132_36175197_36175529_36175623_36176899
ENSMUSG00000046027.18_83281208_83290142_1	chr7	+	1048	6	FSM	ENSMUSG00000046027.18	ENSMUST00000075418.15	2483	6	41	1394	0	-1394	multi-exon	FALSE	canonical	3	154	junction_5	19.4566184112245	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCGCTAAGTCCTGCT	NA	False	NA	NA	False	NA	NA	NA	83281207	83290142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_83281348_83281943_83281994_83282337_83282471_83285958_83286077_83286811_83286906_83289629
ENSMUSG00000046027.18_83281208_83290324_1	chr7	+	1230	6	FSM	ENSMUSG00000046027.18	ENSMUST00000075418.15	2483	6	41	1212	0	-1212	multi-exon	FALSE	canonical	3	154	junction_5	19.4566184112245	821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTTTGTGATCTCTTCCAT	NA	False	NA	37	True	TTTAAA	-39	NA	83281207	83290324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_83281348_83281943_83281994_83282337_83282471_83285958_83286077_83286811_83286906_83289629
ENSMUSG00000046031.8_34002063_34003501_1	chr10	-	615	2	FSM	ENSMUSG00000046031.8	ENSMUST00000062784.8	1094	2	479	0	479	0	multi-exon	FALSE	canonical	3	41	junction_1	0	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTTTCTCCCAAGTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	34003501	34002062	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_34002563_34003386
ENSMUSG00000046031.8_34002063_34003602_1	chr10	-	716	2	FSM	ENSMUSG00000046031.8	ENSMUST00000062784.8	1094	2	378	0	378	0	multi-exon	FALSE	canonical	3	41	junction_1	0	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTTTCTCCCAAGTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	34003602	34002062	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_34002563_34003386
ENSMUSG00000046031.8_34002063_34003708_1	chr10	-	822	2	FSM	ENSMUSG00000046031.8	ENSMUST00000062784.8	1094	2	272	0	272	0	multi-exon	FALSE	canonical	3	41	junction_1	0	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTTTCTCCCAAGTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	34003708	34002062	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_34002563_34003386
ENSMUSG00000046032.17_100141392_100266155_2	chrX	-	1014	5	NIC	ENSMUSG00000046032.17	novel	1114	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_4	161.237984048425	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTCTCAGCTAGTTTCT	NA	False	NA	-11	True	NA	NA	NA	100266155	100141391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_100141834_100145973_100146042_100257379_100257471_100258006_100258132_100265867
ENSMUSG00000046032.17_100141392_100266155_3	chrX	-	1098	6	NNC	ENSMUSG00000046032.17	novel	1114	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_5	178.333844236028	1341	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTCTCAGCTAGTTTCT	NA	False	NA	-11	True	NA	NA	NA	100266155	100141391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_100141834_100145973_100146042_100257379_100257471_100258006_100258132_100259088_100259185_100265879
ENSMUSG00000046032.17_100141539_100266155_1	chrX	-	963	6	FSM	ENSMUSG00000046032.17	ENSMUST00000156473.8	1114	6	4	147	0	-147	multi-exon	FALSE	canonical	3	192	junction_2	126.702170462861	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCTTTAAGTGAATGAT	NA	False	NA	NA	False	NA	NA	NA	100266155	100141538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_100141834_100145973_100146042_100257379_100257471_100258006_100258132_100259088_100259185_100265867
ENSMUSG00000046032.17_100255565_100257064_1	chrX	-	1454	2	NNC	ENSMUSG00000046032.17	novel	2415	4	NA	NA	1081	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100257064	100255564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_100256362_100256407
ENSMUSG00000046032.17_100255565_100266155_1	chrX	-	1091	6	NNC	ENSMUSG00000046032.17	novel	1002	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	219.123344260715	761	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100266155	100255564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_100255953_100257177_100257281_100257379_100257471_100258006_100258132_100259088_100259185_100265867
ENSMUSG00000046032.17_100255565_100266155_2	chrX	-	976	5	NNC	ENSMUSG00000046032.17	novel	1002	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	205.184520614982	727	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100266155	100255564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_100255953_100257379_100257471_100258006_100258132_100259088_100259185_100265879
ENSMUSG00000046032.17_100255565_100266155_3	chrX	-	988	5	FSM	ENSMUSG00000046032.17	ENSMUST00000077876.4	1002	5	14	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	142.088880634622	780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100266155	100255564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_100255953_100257379_100257471_100258006_100258132_100259088_100259185_100265867
ENSMUSG00000046070.10_25097731_25100985_1	chr17	+	2127	2	FSM	ENSMUSG00000046070.10	ENSMUST00000050714.8	2625	2	499	-1	0	1	multi-exon	FALSE	canonical	3	22	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGACCTAGAGTGTGA	8274	False	NA	10	True	ATTAAA	-17	NA	25097730	25100985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25097799_25098926
ENSMUSG00000046085.8_103858189_103885487_1	chr2	-	1366	10	NNC	ENSMUSG00000046085.8	novel	1037	5	NA	NA	-26781	-1962	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	566	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGCACCACCCCGGCCC	NA	False	NA	NA	False	NA	NA	NA	103885487	103858188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_103858312_103860688_103860779_103863940_103864105_103873248_103873356_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180
ENSMUSG00000046085.8_103858189_103891357_1	chr2	-	2389	11	NIC	ENSMUSG00000046085.8	novel	1037	5	NA	NA	-32651	-1962	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	421	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGCACCACCCCGGCCC	NA	False	NA	NA	False	NA	NA	NA	103891357	103858188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103890226
ENSMUSG00000046085.8_103858189_103891841_1	chr2	-	2873	11	NIC	ENSMUSG00000046085.8	novel	1037	5	NA	NA	-33135	-1962	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	591	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGCACCACCCCGGCCC	NA	False	NA	NA	False	NA	NA	NA	103891841	103858188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103890226
ENSMUSG00000046096.8_120276903_120325898_1	chr7	+	747	2	FSM	ENSMUSG00000046096.8	ENSMUST00000208454.2	813	2	60	6	0	3	multi-exon	FALSE	canonical	3	191	junction_1	0	210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTAGGTGAAGGCAGTC	NA	False	NA	15	True	AATAAA	-21	NA	120276902	120325898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_120277094_120325342
ENSMUSG00000046101.17_10012250_10014343_1	chr1	+	401	4	NIC	ENSMUSG00000046101.17	novel	3249	16	NA	NA	9905	2033	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	8760	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGGCCCAGCGTGCGCG	NA	False	NA	NA	False	NA	NA	NA	10012249	10014343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_10012375_10012547_10012617_10012834_10012943_10014244
ENSMUSG00000046101.17_10012250_10014343_2	chr1	+	400	4	NNC	ENSMUSG00000046101.17	novel	3249	16	NA	NA	9905	2033	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4750	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGGCCCAGCGTGCGCG	NA	False	NA	NA	False	NA	NA	NA	10012249	10014343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_10012381_10012547_10012610_10012834_10012943_10014244
ENSMUSG00000046101.17_10012250_10014343_3	chr1	+	400	4	NNC	ENSMUSG00000046101.17	novel	3249	16	NA	NA	9905	2033	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5442	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGGCCCAGCGTGCGCG	NA	False	NA	NA	False	NA	NA	NA	10012249	10014343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_10012381_10012554_10012617_10012834_10012943_10014244
ENSMUSG00000046101.17_10012250_10014343_4	chr1	+	394	4	NNC	ENSMUSG00000046101.17	novel	3249	16	NA	NA	9905	2033	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1317	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGGCCCAGCGTGCGCG	NA	False	NA	NA	False	NA	NA	NA	10012249	10014343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_10012375_10012547_10012610_10012834_10012943_10014244
ENSMUSG00000046101.17_10012250_10014343_5	chr1	+	399	4	NNC	ENSMUSG00000046101.17	novel	3249	16	NA	NA	9905	2033	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9127	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGGCCCAGCGTGCGCG	NA	False	NA	NA	False	NA	NA	NA	10012249	10014343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_10012381_10012547_10012617_10012834_10012943_10014252
ENSMUSG00000046110.16_121279849_121283486_1	chr2	-	2468	3	Fusion	ENSMUSG00000080374.3_ENSMUSG00000046110.16	novel	1059	3	NA	NA	748	1302	intron_retention	FALSE	non_canonical	0	0	junction_1	0	73970	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCCTTCGCGCGACGCCA	6817	False	NA	NA	False	NA	NA	NA	121283486	121279848	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_-_121279923_121280455_121280565_121281201
ENSMUSG00000046111.18_15217556_15228274_1	chr9	-	1161	11	Fusion	ENSMUSG00000031938.16_ENSMUSG00000046111.19	novel	4144	13	NA	NA	979	-3626	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1770	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCCGGCGCCCAGCAGCC	NA	False	NA	NA	False	NA	NA	NA	15228274	15217555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr9_-_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
ENSMUSG00000046111.18_15263058_15269084_1	chr9	-	549	4	ISM	ENSMUSG00000046111.19	ENSMUST00000098979.12	7188	27	0	34665	0	-5178	5prime_fragment	FALSE	canonical	3	124	junction_1	14.522013940528	377	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGTGAGGCATAAAGAAGC	9707	False	NA	NA	False	AAAAAG	-8	NA	15269084	15263057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_15263112_15264194_15264396_15265901_15266033_15268921
ENSMUSG00000046133.4_101747217_101760887_1	chr4	-	1044	4	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9901	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	187.893586904929	2042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTCTTCTTGATGT	NA	False	NA	-2	True	ATTAAA	-26	NA	101760887	101747216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_101747741_101747885_101748198_101760342_101760431_101760767
ENSMUSG00000046133.4_101747217_101760887_2	chr4	-	1381	3	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9901	0	at_least_one_novel_splicesite	FALSE	canonical	3	182	junction_2	141	2375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTCTTCTTGATGT	NA	False	NA	-2	True	ATTAAA	-26	NA	101760887	101747216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_101747741_101747885_101748198_101760342
ENSMUSG00000046223.11_24161909_24175158_1	chr7	+	1272	7	FSM	ENSMUSG00000046223.11	ENSMUST00000002284.11	1506	7	0	234	0	18	multi-exon	FALSE	canonical	3	18	junction_3	5.84284938098603	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGGGTCTCCCCACT	NA	False	NA	NA	False	NA	NA	NA	24161908	24175158	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_24161993_24164555_24164667_24166099_24166244_24171323_24171480_24171997_24172133_24173634_24173782_24174663
ENSMUSG00000046295.14_71858654_71861806_1	chr8	+	1569	8	ISM	ENSMUSG00000046295.14	ENSMUST00000119976.8	2136	9	0	742	0	5	5prime_fragment	TRUE	canonical	3	14	junction_4	32.6384023218424	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAATGTGCTGTTGGATTG	NA	False	NA	NA	False	NA	NA	NA	71858653	71861806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859856_71860394_71860514_71860687_71861308_71861469_71861565
ENSMUSG00000046295.14_71858654_71862121_1	chr8	+	1709	9	FSM	ENSMUSG00000046295.14	ENSMUST00000119976.8	2136	9	0	427	0	1	multi-exon	FALSE	canonical	3	14	junction_4	30.5366071298041	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCAGAGGACAGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	71858653	71862121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859856_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
ENSMUSG00000046323.9_122603208_122607231_1	chr6	+	869	5	NNC	ENSMUSG00000046323.9	novel	833	4	NA	NA	-161	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	872.536675446941	13119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCGACTCTTTGTAATTTA	519	False	NA	24	True	AATAAA	-14	NA	122603207	122607231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_122603291_122603415_122603570_122605535_122605769_122606259_122606296_122606868
ENSMUSG00000046323.9_122603369_122607063_1	chr6	+	665	4	FSM	ENSMUSG00000046323.9	ENSMUST00000049644.9	833	4	0	168	0	-168	multi-exon	FALSE	canonical	3	943	junction_3	656.420766141826	1474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAACTTGTTAACCTTTA	680	False	NA	NA	False	ATTAAA	-21	NA	122603368	122607063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_122603570_122605535_122605769_122606259_122606296_122606868
ENSMUSG00000046324.13_29589807_29625790_1	chr19	-	2840	15	FSM	ENSMUSG00000046324.13	ENSMUST00000159692.8	7058	15	25	4193	0	0	multi-exon	FALSE	canonical	3	290	junction_6	30.8387014999672	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCAAAGAGCTTTTGGG	NA	False	NA	1	True	AATACA	-24	NA	29625790	29589806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_29590080_29590168_29590333_29593122_29593239_29593916_29594120_29595217_29595371_29600468_29600660_29601040_29601216_29604246_29604468_29606003_29606217_29608742_29608836_29609790_29609938_29614690_29614797_29617256_29617385_29623366_29623669_29625435
ENSMUSG00000046330.11_72750449_72752778_1	chr1	+	362	4	NNC	ENSMUSG00000046330.11	novel	558	4	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7606.40918348906	497874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTTTTTTGCCTTGT	NA	False	NA	0	True	AATAAA	-17	NA	72750448	72752778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_72750483_72750830_72750964_72751306_72751384_72752660
ENSMUSG00000046330.11_72750449_72752778_2	chr1	+	356	4	NNC	ENSMUSG00000046330.11	novel	558	4	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7606.40918348906	143054	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTTTTTTGCCTTGT	NA	False	NA	0	True	AATAAA	-17	NA	72750448	72752778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_72750483_72750830_72750935_72751283_72751384_72752660
ENSMUSG00000046330.11_72750449_72752832_1	chr1	+	416	4	NNC	ENSMUSG00000046330.11	novel	558	4	NA	NA	0	56	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7606.40918348906	539624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTATTTTCGAAAGATG	NA	False	NA	33	True	ATTAAA	-20	NA	72750448	72752832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_72750483_72750830_72750964_72751306_72751384_72752660
ENSMUSG00000046330.11_72750449_72752972_1	chr1	+	556	4	NNC	ENSMUSG00000046330.11	novel	558	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7606.40918348906	552816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTACATAGCTTGGTTT	NA	False	NA	19	True	AATAAA	-17	NA	72750448	72752972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_72750483_72750830_72750964_72751306_72751384_72752660
ENSMUSG00000046337.18_36639057_36722264_1	chr1	-	1782	11	NNC	ENSMUSG00000046337.18	novel	1659	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_8	39.9335698379196	164	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACGCC	NA	False	NA	NA	False	AATACA	-27	NA	36722264	36639056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36695891_36696015_36698444_36698507_36699815_36700131_36721948
ENSMUSG00000046338.5_127267119_127278012_1	chr2	+	2566	22	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	2	10	junction_1	54.5121842462079	306	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	5001	False	NA	14	True	AATAAA	-25	NA	127267118	127278012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_127267142_127269222_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ENSMUSG00000046338.5_127276025_127278012_1	chr2	+	823	7	ISM	ENSMUSG00000046338.5	ENSMUST00000062211.4	2628	22	8906	0	8906	0	3prime_fragment	FALSE	canonical	3	218	junction_2	19.2303290547914	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	5259	False	NA	14	True	AATAAA	-25	NA	127276024	127278012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ENSMUSG00000046351.12_23539512_23553378_1	chr13	-	2680	5	FSM	ENSMUSG00000046351.12	ENSMUST00000125328.2	815	5	-14	-1851	0	1689	multi-exon	FALSE	canonical	3	71	junction_1	23.1124966197942	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTGTATAAGTAGGGTG	9006	False	NA	-10	True	AATAAA	-15	NA	23553378	23539511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_23541884_23546749_23546825_23546972_23547046_23552289_23552376_23553304
ENSMUSG00000046364.15_109118354_109120973_1	chr7	+	549	5	NNC	ENSMUSG00000046364.15	novel	1158	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6920.42061582965	42020	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118353	109120973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_109118430_109118799_109118856_109119124_109119201_109119674_109119850_109120807
ENSMUSG00000046364.15_109118354_109120973_2	chr7	+	473	4	NNC	ENSMUSG00000046364.15	novel	1158	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	576	junction_2	5067.95095565149	1540	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118353	109120973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_109118430_109118791_109118856_109119682_109119850_109120807
ENSMUSG00000046364.15_109118403_109120973_1	chr7	+	870	4	NIC	ENSMUSG00000046364.15	novel	1158	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	12965	junction_3	1855.24883027108	37288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118402	109120973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_109118856_109119124_109119201_109119674_109119850_109120807
ENSMUSG00000046364.15_109118403_109120973_2	chr7	+	494	5	NNC	ENSMUSG00000046364.15	novel	1158	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6450.62482923166	26984	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118402	109120973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_109118430_109118791_109118856_109119138_109119201_109119674_109119850_109120807
ENSMUSG00000046364.15_109118403_109120973_3	chr7	+	590	5	NNC	ENSMUSG00000046364.15	novel	1158	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	6916.63004558578	35650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118402	109120973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_109118512_109118791_109118856_109119124_109119201_109119674_109119850_109120807
ENSMUSG00000046364.15_109118403_109120973_4	chr7	+	503	5	NNC	ENSMUSG00000046364.15	novel	1158	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6450.62482923166	71554	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118402	109120973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_109118430_109118791_109118856_109119129_109119201_109119674_109119850_109120807
ENSMUSG00000046364.15_109118403_109120973_5	chr7	+	500	5	NNC	ENSMUSG00000046364.15	novel	760	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6450.62482923166	44934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118402	109120973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_109118430_109118791_109118862_109119138_109119201_109119674_109119850_109120807
ENSMUSG00000046364.15_109118403_109120973_6	chr7	+	500	5	NNC	ENSMUSG00000046364.15	novel	1158	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	6204.19053442913	43508	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118402	109120973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_109118430_109118791_109118856_109119124_109119201_109119682_109119850_109120807
ENSMUSG00000046364.15_109118403_109120973_7	chr7	+	491	5	NNC	ENSMUSG00000046364.15	novel	760	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6450.62482923166	16761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118402	109120973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_109118430_109118791_109118860_109119145_109119201_109119674_109119850_109120807
ENSMUSG00000046364.15_109118403_109121574_1	chr7	+	1104	5	NNC	ENSMUSG00000046364.15	novel	1158	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6450.62482923166	77105	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATCTTTAAATCTGGAAG	NA	False	NA	20	True	AATAAA	-24	NA	109118402	109121574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_109118430_109118791_109118856_109119129_109119201_109119674_109119850_109120807
ENSMUSG00000046367.11_134455649_134475300_1	chr1	-	601	4	Genic_Genomic	ENSMUSG00000046367.11	novel	1735	3	NA	NA	-540	13030	multi-exon	FALSE	non_canonical	0	0	junction_1	0	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGATTCCAACTTCTGAG	NA	False	NA	NA	False	NA	NA	NA	134475300	134455648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_-_134455766_134474546_134474668_134474818_134474934_134475052
ENSMUSG00000046388.5_16723346_16758291_1	chr19	+	1009	11	NIC	ENSMUSG00000046388.5	novel	552	3	NA	NA	-34565	-176	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	170	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGCACCACGCGTGCGCA	NA	False	NA	NA	False	NA	NA	NA	16723345	16758291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_16723443_16726889_16726948_16727210_16727292_16727485_16727546_16729482_16729543_16731615_16731726_16736950_16737053_16737304_16737401_16739512_16739556_16743860_16743905_16758033
ENSMUSG00000046388.5_16736987_16758291_1	chr19	+	507	5	NIC	ENSMUSG00000046388.5	novel	552	3	NA	NA	-20924	-176	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	146	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGCACCACGCGTGCGCA	NA	False	NA	NA	False	NA	NA	NA	16736986	16758291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_16737053_16737304_16737401_16739512_16739556_16743860_16743905_16758033
ENSMUSG00000046402.11_98306951_98328628_1	chr9	+	715	4	FSM	ENSMUSG00000046402.11	ENSMUST00000052068.11	2652	4	1937	0	1937	0	multi-exon	FALSE	canonical	3	98	junction_1	8.01387685344754	458	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTACCTTCACTTGTTTT	4822	False	NA	41	True	AATAAA	-42	NA	98306950	98328628	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_98307105_98307505_98307685_98326642_98326745_98328348
ENSMUSG00000046434.17_103148406_103153005_1	chr15	+	1474	11	NNC	ENSMUSG00000046434.17	novel	1918	11	NA	NA	-453	-377	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_1	4002.55468919539	7624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTTTAAATGTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	103148405	103153005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_103148545_103148905_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
ENSMUSG00000046434.17_103148859_103152992_1	chr15	+	1528	11	FSM	ENSMUSG00000046434.17	ENSMUST00000036004.16	1918	11	0	390	0	-390	multi-exon	FALSE	canonical	3	2223	junction_7	4396.07925429012	3286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGTCTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	103148858	103152992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103152682
ENSMUSG00000046434.17_103151084_103152992_1	chr15	+	757	5	ISM	ENSMUSG00000046434.17	ENSMUST00000036004.16	1918	11	2225	390	2163	-390	3prime_fragment	FALSE	canonical	3	2223	junction_1	5430.92802843124	1552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGTCTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	103151083	103152992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103152682
ENSMUSG00000046434.17_103151084_103153384_1	chr15	+	990	4	ISM	ENSMUSG00000046434.17	ENSMUST00000087351.9	1737	10	2203	-2	2163	2	3prime_fragment	FALSE	canonical	3	9291	junction_1	1808.10514689335	11723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATGACAACTGTATGGA	NA	False	NA	1	True	AATAAA	-19	NA	103151083	103153384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_103151146_103152051_103152208_103152385_103152456_103152682
ENSMUSG00000046434.17_103151084_103155119_1	chr15	+	671	6	NIC	ENSMUSG00000046434.17	novel	3118	13	NA	NA	2163	0	combination_of_known_junctions	FALSE	canonical	3	551	junction_4	4811.66382865636	2075	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTTTCTTGTCTTCCT	NA	False	NA	13	True	AATAAA	-13	NA	103151083	103155119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103154772_103154849_103154971
ENSMUSG00000046463.6_37017085_37027313_1	chr10	+	1058	3	FSM	ENSMUSG00000046463.6	ENSMUST00000217338.2	337	3	0	-721	0	2	multi-exon	FALSE	canonical	3	7	junction_1	7.5	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTC	NA	False	NA	6	True	NA	NA	NA	37017084	37027313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_37017182_37024872_37025003_37026482
ENSMUSG00000046516.11_38167384_38173114_1	chr16	+	457	4	NIC	ENSMUSG00000046516.11	novel	444	3	NA	NA	0	7	combination_of_known_junctions	FALSE	canonical	3	81	junction_3	1753.17641883398	38995	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTGAACCGTCTTTGTT	NA	False	NA	17	True	ATTAAA	-19	NA	38167383	38173114	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_38167570_38169602_38169692_38170038_38170094_38172987
ENSMUSG00000046550.9_152615237_152617239_1	chrX	+	1256	3	FSM	ENSMUSG00000046550.9	ENSMUST00000123264.2	536	3	0	-720	0	0	multi-exon	FALSE	canonical	3	17	junction_1	2	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGTCATCTAAAAAATTGA	NA	False	NA	NA	False	AATAAA	-19	NA	152615236	152617239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_152615326_152615430_152615545_152616186
ENSMUSG00000046567.11_100414103_100425097_1	chr10	-	614	4	ISM	ENSMUSG00000046567.11	ENSMUST00000054471.10	2564	7	160	5976	0	112	5prime_fragment	FALSE	canonical	3	50	junction_2	5.18544972870135	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTTAATCTAGCTCTT	NA	False	NA	NA	False	AATAAA	-22	NA	100425097	100414102	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_100414294_100419775_100419872_100422052_100422171_100424888
ENSMUSG00000046574.9_44699326_44702759_1	chr7	-	1042	4	ISM	ENSMUSG00000046574.9	ENSMUST00000057293.8	7023	14	-454	22339	-454	-21647	5prime_fragment	FALSE	canonical	3	13	junction_3	4.10960933531265	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACAGTGCCCTCGTCATT	NA	False	NA	NA	False	NA	NA	NA	44702759	44699325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_44699553_44699628_44699791_44700641_44700755_44702219
ENSMUSG00000046598.16_31247566_31276315_1	chr16	+	1718	7	FSM	ENSMUSG00000046598.16	ENSMUST00000115227.10	3122	7	0	1404	0	0	multi-exon	FALSE	canonical	3	475	junction_4	18.4812217008388	2530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTGTGTGCATGAAA	NA	False	NA	25	True	AGTAAA	-15	NA	31247565	31276315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_31247806_31256809_31256936_31265409_31265483_31266370_31266482_31268641_31268784_31273845_31273999_31275442
ENSMUSG00000046598.16_31247610_31276043_1	chr16	+	1402	7	FSM	ENSMUSG00000046598.16	ENSMUST00000115227.10	3122	7	44	1676	0	3	multi-exon	FALSE	canonical	3	475	junction_4	18.4812217008388	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTTCAATGTGGTGAATG	NA	False	NA	13	True	NA	NA	NA	31247609	31276043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_31247806_31256809_31256936_31265409_31265483_31266370_31266482_31268641_31268784_31273845_31273999_31275442
ENSMUSG00000046598.16_31247610_31276315_1	chr16	+	1674	7	FSM	ENSMUSG00000046598.16	ENSMUST00000115227.10	3122	7	44	1404	0	0	multi-exon	FALSE	canonical	3	475	junction_4	18.4812217008388	2516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTGTGTGCATGAAA	NA	False	NA	25	True	AGTAAA	-15	NA	31247609	31276315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_31247806_31256809_31256936_31265409_31265483_31266370_31266482_31268641_31268784_31273845_31273999_31275442
ENSMUSG00000046605.15_121507593_121563979_1	chr11	-	2294	13	FSM	ENSMUSG00000046605.15	ENSMUST00000067399.14	2864	13	0	570	0	-570	multi-exon	FALSE	canonical	3	46	junction_9	15.1867998238236	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTCTAACAATGTAAAGG	NA	False	NA	-7	True	AATAAA	-20	NA	121563979	121507592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_121508679_121510460_121510555_121514257_121514333_121514747_121514817_121514917_121515054_121520698_121520824_121521597_121521694_121530577_121530674_121535352_121535419_121542434_121542500_121561695_121561796_121561882_121562000_121563810
ENSMUSG00000046605.15_121545113_121563979_1	chr11	-	989	4	NNC	ENSMUSG00000046605.15	novel	2864	13	NA	NA	0	-27019	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	36.4173340899938	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTGTCTCCACTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	121563979	121545112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_121545716_121561695_121561796_121561882_121562000_121563810
ENSMUSG00000046668.10_35963367_35994741_1	chr18	+	2189	3	NIC	ENSMUSG00000046668.10	novel	857	2	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_1	135.5	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACACTCCTGGCTTCTTGC	NA	False	NA	34	True	AATAAA	-25	NA	35963366	35994741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_35963453_35991445_35992510_35993702
ENSMUSG00000046671.19_134253416_134262581_1	chr4	-	1299	7	NNC	ENSMUSG00000046671.19	novel	1969	7	NA	NA	-2	-541	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	198.402578948292	437	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTAGTCTCCATAATTG	NA	False	NA	-2	True	AATGAA	-18	NA	134262581	134253415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260059_134262560
ENSMUSG00000046675.8_102710021_102711502_1	chr12	+	653	2	NNC	ENSMUSG00000046675.8	novel	3367	2	NA	NA	0	-2318	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	0	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCAGTCTTTAGAAACTT	NA	False	NA	NA	False	AGTAAA	-15	NA	102710020	102711502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_102710030_102710858
ENSMUSG00000046675.8_102710021_102711662_1	chr12	+	813	2	NNC	ENSMUSG00000046675.8	novel	3367	2	NA	NA	0	-2158	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	0	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTTGCTTGCTTTAAAA	NA	False	NA	3	True	CATAAA	-18	NA	102710020	102711662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_102710030_102710858
ENSMUSG00000046675.8_102710304_102711662_1	chr12	+	926	2	FSM	ENSMUSG00000046675.8	ENSMUST00000057416.8	3367	2	283	2158	283	-2158	multi-exon	FALSE	canonical	3	165	junction_1	0	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTTGCTTGCTTTAAAA	NA	False	NA	3	True	CATAAA	-18	NA	102710303	102711662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_102710426_102710858
ENSMUSG00000046679.17_86415371_86416470_1	chr6	+	978	2	NNC	ENSMUSG00000046679.17	novel	505	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	0	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCATTTCTCGGGTCTCA	1468	False	NA	NA	False	ATTAAA	-1	NA	86415370	86416470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_86415470_86415591
ENSMUSG00000046679.17_86415371_86416470_2	chr6	+	464	2	NIC	ENSMUSG00000046679.17	novel	732	3	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCATTTCTCGGGTCTCA	1468	False	NA	NA	False	ATTAAA	-1	NA	86415370	86416470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_86415470_86416105
ENSMUSG00000046679.17_86415371_86422958_1	chr6	+	887	3	FSM	ENSMUSG00000046679.17	ENSMUST00000203568.3	732	3	0	-155	0	155	multi-exon	FALSE	canonical	0	0	junction_1	17.5	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCCCCTGGTACAGAGAGT	1468	False	NA	NA	False	NA	NA	NA	86415370	86422958	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_86415466_86420708_86420958_86422415
ENSMUSG00000046679.17_86415690_86422958_1	chr6	+	932	3	ISM	ENSMUSG00000046679.17	ENSMUST00000141972.8	2630	11	16	24412	0	155	5prime_fragment	FALSE	canonical	3	14	junction_1	10.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCCCCTGGTACAGAGAGT	1787	False	NA	NA	False	NA	NA	NA	86415689	86422958	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_86415830_86420708_86420958_86422415
ENSMUSG00000046711.17_27775606_27782645_1	chr17	+	1655	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232253.2	600	5	-9	-1046	0	1	multi-exon	FALSE	canonical	3	289	junction_4	2144.39797787164	12881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGTGTAAGGAGCAT	NA	False	NA	NA	False	AATAAA	-24	NA	27775605	27782645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780486_27781414
ENSMUSG00000046711.17_27775606_27782645_2	chr17	+	1625	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232552.2	917	5	-9	-699	0	1	multi-exon	FALSE	canonical	3	1035	junction_1	1979.76797882984	10314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGTGTAAGGAGCAT	NA	False	NA	NA	False	AATAAA	-24	NA	27775605	27782645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_27775724_27778506_27778645_27779901_27779986_27780434_27780486_27781411
ENSMUSG00000046718.9_71986899_71990100_1	chr8	-	779	4	NNC	ENSMUSG00000046718.9	novel	792	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	159.687890029965	3117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTGCTTCTAAGTTGCT	NA	False	NA	NA	False	AATAAA	-17	NA	71990100	71986898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_71987125_71987315_71987437_71988975_71989079_71989771
ENSMUSG00000046722.15_95136121_95141893_1	chr3	+	900	5	FSM	ENSMUSG00000046722.15	ENSMUST00000053872.12	2805	5	78	1827	0	0	multi-exon	FALSE	canonical	3	354	junction_1	33.5885024971343	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGCTTTTATTCTCTA	1952	False	NA	NA	False	AATGAA	-23	NA	95136120	95141893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95136177_95139095_95139404_95139859_95139971_95140798_95140891_95141560
ENSMUSG00000046722.15_95136121_95142201_1	chr3	+	1208	5	FSM	ENSMUSG00000046722.15	ENSMUST00000053872.12	2805	5	78	1519	0	228	multi-exon	FALSE	canonical	3	354	junction_1	33.5885024971343	922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCATCTTGCTATCTCTG	1952	False	NA	42	True	ATTAAA	-26	NA	95136120	95142201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95136177_95139095_95139404_95139859_95139971_95140798_95140891_95141560
ENSMUSG00000046722.15_95136121_95142201_2	chr3	+	1199	5	NNC	ENSMUSG00000046722.15	novel	2805	5	NA	NA	0	228	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	174.73032793422	832	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCATCTTGCTATCTCTG	1952	False	NA	42	True	ATTAAA	-26	NA	95136120	95142201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_95136177_95139095_95139404_95139868_95139971_95140798_95140891_95141560
ENSMUSG00000046722.15_95136121_95143724_1	chr3	+	2731	5	FSM	ENSMUSG00000046722.15	ENSMUST00000053872.12	2805	5	78	-4	0	4	multi-exon	FALSE	canonical	3	354	junction_1	33.5885024971343	1197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGTTTCAGAGTAATCACTA	1952	False	NA	25	True	AATAAA	-15	NA	95136120	95143724	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95136177_95139095_95139404_95139859_95139971_95140798_95140891_95141560
ENSMUSG00000046727.14_36481827_36536033_1	chr18	+	869	4	FSM	ENSMUSG00000046727.14	ENSMUST00000235864.2	1101	4	115	117	0	0	multi-exon	FALSE	canonical	3	70	junction_2	406.851597295896	1748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGACTTACTCCAGGT	NA	False	NA	17	True	AATAAA	-17	NA	36481826	36536033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_36481870_36483746_36483862_36499567_36499795_36535549
ENSMUSG00000046753.11_27204364_27230430_1	chr14	-	2958	18	FSM	ENSMUSG00000046753.11	ENSMUST00000223689.2	4262	18	-13	1317	-13	0	multi-exon	FALSE	canonical	3	74	junction_15	12.2471661858887	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATCTCTTGTCATGTT	7513	False	NA	NA	False	AATAAA	-20	NA	27230430	27204363	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_27204560_27205764_27205890_27206021_27206276_27207049_27207091_27208419_27208908_27211990_27212102_27212619_27212765_27213744_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27222197_27222640_27227594_27227621_27228607_27228673_27230378
ENSMUSG00000046756.11_115494751_115498140_1	chr11	+	1240	5	FSM	ENSMUSG00000046756.11	ENSMUST00000058109.9	1962	5	0	722	0	313	multi-exon	TRUE	canonical	3	642	junction_4	47.0451910401053	3217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTGTTGGAAAGTTCTG	NA	False	NA	10	True	AATAAA	-15	NA	115494750	115498140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_115495070_115495546_115495739_115495848_115495913_115496795_115496964_115497643
ENSMUSG00000046756.11_115494977_115498140_1	chr11	+	1014	5	FSM	ENSMUSG00000046756.11	ENSMUST00000058109.9	1962	5	226	722	226	313	multi-exon	FALSE	canonical	3	642	junction_4	47.0451910401053	2357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTGTTGGAAAGTTCTG	NA	False	NA	10	True	AATAAA	-15	NA	115494976	115498140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_115495070_115495546_115495739_115495848_115495913_115496795_115496964_115497643
ENSMUSG00000046756.11_115494977_115498434_1	chr11	+	1308	5	FSM	ENSMUSG00000046756.11	ENSMUST00000058109.9	1962	5	226	428	226	-428	multi-exon	FALSE	canonical	3	642	junction_4	47.0451910401053	2842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGTGGTTAAGAGTACT	NA	False	NA	9	True	AATAAA	-23	NA	115494976	115498434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_115495070_115495546_115495739_115495848_115495913_115496795_115496964_115497643
ENSMUSG00000046756.11_115498744_115503746_1	chr11	+	1305	6	NNC	ENSMUSG00000046756.11	novel	1962	5	NA	NA	3051	4884	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1188	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCAGACTCTCCCCGGCC	NA	False	NA	NA	False	NA	NA	NA	115498743	115503746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728_115502861_115503628
ENSMUSG00000046756.11_115498744_115503746_2	chr11	+	1323	6	NIC	ENSMUSG00000046756.11	novel	1962	5	NA	NA	3051	4884	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCAGACTCTCCCCGGCC	NA	False	NA	NA	False	NA	NA	NA	115498743	115503746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728_115502861_115503610
ENSMUSG00000046774.18_100838262_100842247_1	chrX	+	2179	6	NIC	ENSMUSG00000046774.18	novel	1991	7	NA	NA	0	-1	intron_retention	FALSE	canonical	3	236	junction_4	22.2656686403081	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGTACTTTTGCAACTG	NA	False	NA	NA	False	NA	NA	NA	100838261	100842247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841990_100842072
ENSMUSG00000046774.18_100838262_100842247_2	chrX	+	328	3	NIC	ENSMUSG00000046774.18	novel	1940	6	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	140.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGTACTTTTGCAACTG	NA	False	NA	NA	False	NA	NA	NA	100838261	100842247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_100838373_100841947_100841990_100842072
ENSMUSG00000046774.18_100838262_100842247_3	chrX	+	791	8	NNC	ENSMUSG00000046774.18	novel	1991	7	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	110.314393014341	77	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGTACTTTTGCAACTG	NA	False	NA	NA	False	NA	NA	NA	100838261	100842247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_100838373_100839575_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841763_100841947_100841990_100842072
ENSMUSG00000046774.18_100838262_100842247_4	chrX	+	976	7	NNC	ENSMUSG00000046774.18	novel	1991	7	NA	NA	0	-1	intron_retention	FALSE	canonical	2	5	junction_1	102.217089243107	507	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGTACTTTTGCAACTG	NA	False	NA	NA	False	NA	NA	NA	100838261	100842247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_100838373_100839575_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841990_100842072
ENSMUSG00000046774.18_100838262_100842247_5	chrX	+	1007	8	NIC	ENSMUSG00000046774.18	novel	1991	7	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	107.73872401816	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGTACTTTTGCAACTG	NA	False	NA	NA	False	NA	NA	NA	100838261	100842247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_100838373_100839359_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841763_100841947_100841990_100842072
ENSMUSG00000046774.18_100838262_100842247_6	chrX	+	800	8	NNC	ENSMUSG00000046774.18	novel	1050	9	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	114.068901483771	77	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGTACTTTTGCAACTG	NA	False	NA	NA	False	NA	NA	NA	100838261	100842247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_100838373_100839575_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841772_100841947_100841990_100842072
ENSMUSG00000046774.18_100838262_100842247_7	chrX	+	1192	7	NIC	ENSMUSG00000046774.18	novel	1050	9	NA	NA	0	-1	intron_retention	FALSE	canonical	3	15	junction_1	98.5675177508065	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGTACTTTTGCAACTG	NA	False	NA	NA	False	NA	NA	NA	100838261	100842247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_100838373_100839359_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841990_100842072
ENSMUSG00000046792.9_6145285_6158970_1	chr7	-	641	4	NNC	ENSMUSG00000046792.9	novel	576	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	65.7723346096214	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAACTCGAAGTTCATGC	9626	False	NA	-10	True	AATAAA	-16	NA	6158970	6145284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_6145619_6145705_6145797_6146060_6146150_6158843
ENSMUSG00000046792.9_6145285_6159180_1	chr7	-	660	4	NNC	ENSMUSG00000046792.9	novel	576	3	NA	NA	-184	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	64.546279693118	789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAACTCGAAGTTCATGC	9416	False	NA	-10	True	AATAAA	-16	NA	6159180	6145284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_6145619_6146060_6146150_6158843_6158930_6159029
ENSMUSG00000046792.9_6145401_6158970_2	chr7	-	525	4	NNC	ENSMUSG00000046792.9	novel	576	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	65.7723346096214	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTTCAGTGTTCCTTA	9626	False	NA	NA	False	AATAAA	-16	NA	6158970	6145400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_6145619_6145705_6145797_6146060_6146150_6158843
ENSMUSG00000046792.9_6145401_6158970_3	chr7	-	434	3	FSM	ENSMUSG00000046792.9	ENSMUST00000207628.2	576	3	26	116	0	0	multi-exon	FALSE	canonical	3	90	junction_1	37	666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTTCAGTGTTCCTTA	9626	False	NA	NA	False	AATAAA	-16	NA	6158970	6145400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_6145619_6146060_6146150_6158843
ENSMUSG00000046792.9_6145401_6159185_1	chr7	-	549	4	NNC	ENSMUSG00000046792.9	novel	576	3	NA	NA	-189	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	64.546279693118	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTTCAGTGTTCCTTA	9411	False	NA	NA	False	AATAAA	-16	NA	6159185	6145400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_6145619_6146060_6146150_6158843_6158930_6159029
ENSMUSG00000046794.10_35853919_35855293_1	chr8	+	1318	3	NNC	ENSMUSG00000046794.10	novel	4221	2	NA	NA	10105	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACTATTCCTTCTATT	NA	False	NA	NA	False	NA	NA	NA	35853918	35855293	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_35854274_35854304_35855170_35855195
ENSMUSG00000046806.14_34850630_34854995_1	chr6	-	1471	4	FSM	ENSMUSG00000046806.14	ENSMUST00000115007.9	3326	4	0	1855	0	0	multi-exon	FALSE	canonical	3	11	junction_1	4.92160768674447	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTGTGACGACTATTC	7597	False	NA	-20	True	NA	NA	NA	34854995	34850629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_34851631_34852471_34852548_34853473_34853707_34854834
ENSMUSG00000046818.8_137329433_137332279_1	chr3	+	907	3	FSM	ENSMUSG00000046818.8	ENSMUST00000053855.8	2722	3	0	1815	0	344	multi-exon	FALSE	canonical	3	67	junction_2	6.5	305	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTTGTAGTTTGCCTGC	NA	False	NA	NA	False	AATAAA	-21	NA	137329432	137332279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_137329645_137329892_137330035_137331726
ENSMUSG00000046822.15_80866627_80873149_1	chr10	-	1430	4	FSM	ENSMUSG00000046822.15	ENSMUST00000117276.11	3796	4	111	2255	-7	-2252	multi-exon	FALSE	canonical	3	49	junction_3	7.58653778449403	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTGGCCATGTCACC	NA	False	NA	-1	True	TTTAAA	-25	NA	80873149	80866626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80867535_80869445_80869768_80870751_80870840_80873037
ENSMUSG00000046836.14_183078593_183104464_1	chr1	-	2412	10	NIC	ENSMUSG00000046836.14	novel	2868	13	NA	NA	-25651	-5092	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCTCTGGGCCGGCCCC	NA	False	NA	NA	False	NA	NA	NA	183104464	183078592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_183079173_183085612_183085683_183087358_183087413_183087819_183087875_183094595_183094660_183094913_183095018_183097514_183097638_183099746_183099870_183103138_183103257_183103343
ENSMUSG00000046865.8_27869147_27878694_1	chr7	+	1179	9	NNC	ENSMUSG00000046865.8	novel	1197	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	844.346936987397	13913	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGTCTGGTGCCTATT	8543	False	NA	0	True	ATTAAA	-14	NA	27869146	27878694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_27869244_27873928_27874112_27874209_27874318_27874408_27874504_27875279_27875451_27876567_27876701_27877629_27877743_27878322_27878463_27878555
ENSMUSG00000046873.19_156333657_156381675_1	chrX	-	1924	11	FSM	ENSMUSG00000046873.19	ENSMUST00000058098.15	4797	11	36	2837	0	-2837	multi-exon	FALSE	canonical	3	154	junction_9	30.3809150619266	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTCATGTAATACCATTT	NA	False	NA	NA	False	NA	NA	NA	156381675	156333656	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_156334147_156335911_156335988_156337878_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
ENSMUSG00000046873.19_156333851_156381639_1	chrX	-	1545	10	NIC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	0	-3031	combination_of_known_junctions	FALSE	canonical	3	97	junction_9	42.882267767562	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATGAAATGTAAAGTGTT	NA	False	NA	NA	False	AGTAAA	-40	NA	156381639	156333850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_156334147_156335911_156335988_156337878_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156381491
ENSMUSG00000046873.19_156341749_156381675_1	chrX	-	1050	6	NIC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	0	7193	combination_of_known_junctions	FALSE	canonical	3	97	junction_5	56.7577307509735	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATTCTTGGTATGTTGG	NA	False	NA	NA	False	AATAAA	-19	NA	156381675	156341748	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156381491
ENSMUSG00000046873.19_156341749_156381675_2	chrX	-	1199	7	ISM	ENSMUSG00000046873.19	ENSMUST00000058098.15	4797	11	36	10929	0	7193	5prime_fragment	FALSE	canonical	3	154	junction_5	38.2771327150936	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATTCTTGGTATGTTGG	NA	False	NA	NA	False	AATAAA	-19	NA	156381675	156341748	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
ENSMUSG00000046873.19_156355827_156381675_1	chrX	-	795	5	FSM	ENSMUSG00000046873.19	ENSMUST00000139786.8	2379	5	-28	1612	0	117	multi-exon	FALSE	canonical	3	154	junction_3	45.1386752131695	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATCTGTTATTTGAGT	NA	False	NA	NA	False	AATAAA	-21	NA	156381675	156355826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
ENSMUSG00000046909.10_80027504_80032979_1	chr11	-	1292	4	NNC	ENSMUSG00000046909.10	novel	1309	4	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	126.117229415951	2652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCCTTCTTTGCTTAA	NA	False	NA	-4	True	AATAAA	-14	NA	80032979	80027503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_80028106_80028743_80028894_80030691_80031150_80032897
ENSMUSG00000046942.18_78666837_78679188_1	chrX	-	1922	4	NNC	ENSMUSG00000046942.18	novel	1725	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	145.164274760241	2198	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	0	True	AATAAA	-22	NA	78679188	78666836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_78668390_78671446_78671527_78673369_78673567_78679096
ENSMUSG00000046947.13_39550807_39564686_1	chr6	+	2525	8	FSM	ENSMUSG00000046947.13	ENSMUST00000140364.8	3542	8	0	1017	0	0	multi-exon	FALSE	canonical	3	19	junction_2	10.7437689582647	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTTTTCTTCTTCTTAAA	NA	False	NA	18	True	AATACA	-18	NA	39550806	39564686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_39552141_39553296_39553444_39556596_39556726_39557929_39558026_39560744_39560997_39562660_39562790_39563774_39563829_39564302
ENSMUSG00000046949.17_34148734_34169630_1	chr13	+	982	7	FSM	ENSMUSG00000046949.17	ENSMUST00000058978.9	3842	7	64	2796	0	1	multi-exon	FALSE	canonical	3	158	junction_1	21.7995922489899	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTTGCACTGTATTAGT	NA	False	NA	14	True	AATACA	-26	NA	34148733	34169630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_34148784_34152172_34152261_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
ENSMUSG00000046971.8_120130447_120131671_1	chr2	-	957	2	ISM	ENSMUSG00000046971.8	ENSMUST00000142183.2	2610	15	11187	9	11187	0	3prime_fragment	FALSE	canonical	2	16	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTCACTGAGCCTGT	5935	False	NA	NA	False	AATAAA	-22	NA	120131671	120130446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_120131110_120131377
ENSMUSG00000046991.13_15159573_15163339_1	chr17	-	538	2	NNC	ENSMUSG00000046991.13	novel	413	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTTCTCAGTTCAGTTG	NA	False	NA	NA	False	NA	NA	NA	15163339	15159572	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_15159843_15163071
ENSMUSG00000047067.8_92834703_92836157_1	chr1	+	671	2	NNC	ENSMUSG00000047067.8	novel	1314	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCGAGTTGCTCTTTATG	2855	False	NA	NA	False	AATAAA	-14	NA	92834702	92836157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_92835058_92835841
ENSMUSG00000047084.9_79910963_79914581_1	chr7	+	776	3	FSM	ENSMUSG00000047084.9	ENSMUST00000117989.2	1317	3	0	541	0	-541	multi-exon	FALSE	canonical	3	448	junction_2	14	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGAAGAGCTGGCAGTGATA	NA	False	NA	NA	False	NA	NA	NA	79910962	79914581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_79911172_79911568_79911680_79914125
ENSMUSG00000047084.9_79910963_79915123_1	chr7	+	1310	3	NNC	ENSMUSG00000047084.9	novel	1317	3	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	224	2318	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTGCTTGGTTCTCTT	NA	False	NA	14	True	AATAAA	-14	NA	79910962	79915123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_79911164_79911568_79911680_79914125
ENSMUSG00000047115.16_49344757_49366214_1	chr6	+	1293	7	NNC	ENSMUSG00000047115.16	novel	2730	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	13.9483173019385	106	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATAGGGTCAGATTTTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	49344756	49366214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355443_49359896_49360014_49362306_49362390_49365750
ENSMUSG00000047126.18_86585481_86595780_1	chr11	-	2133	9	ISM	ENSMUSG00000047126.18	ENSMUST00000060766.16	6163	32	52547	0	-1257	0	3prime_fragment	FALSE	canonical	3	1101	junction_5	58.1741727487379	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTAGAATTGCAGTTT	6586	False	NA	-7	True	AATAAA	-19	NA	86595780	86585480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_86586517_86588090_86588167_86593034_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713
ENSMUSG00000047139.10_43455165_43459474_1	chr10	+	1029	2	FSM	ENSMUSG00000047139.10	ENSMUST00000058714.10	1816	2	0	787	0	351	multi-exon	FALSE	canonical	3	74	junction_1	0	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTAGACATTTCCCATTGT	NA	False	NA	NA	False	AATAAA	-20	NA	43455164	43459474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_43455319_43458599
ENSMUSG00000047153.5_56134740_56137668_1	chr14	+	1202	6	NNC	ENSMUSG00000047153.5	novel	5882	8	NA	NA	12266	1436	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	975	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGAGCTAGCACGCCTGCG	NA	False	NA	NA	False	NA	NA	NA	56134739	56137668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_56135470_56135705_56135844_56136640_56136763_56137103_56137187_56137270_56137378_56137646
ENSMUSG00000047153.5_56134740_56137668_2	chr14	+	1198	6	NNC	ENSMUSG00000047153.5	novel	5882	8	NA	NA	12266	1436	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	547	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGAGCTAGCACGCCTGCG	NA	False	NA	NA	False	NA	NA	NA	56134739	56137668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_56135470_56135709_56135844_56136640_56136763_56137103_56137187_56137270_56137378_56137646
ENSMUSG00000047187.10_8535824_8607778_1	chr4	+	1953	8	FSM	ENSMUSG00000047187.10	ENSMUST00000060232.8	2133	8	180	0	180	0	multi-exon	FALSE	canonical	3	1070	junction_6	76.6414924655499	1043	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTAATGGCTGCCTTT	-11	True	NA	86	True	NA	NA	NA	8535823	8607778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_8535909_8561151_8561224_8572525_8572594_8577954_8578038_8578470_8578564_8582381_8582494_8604373_8604443_8606407
ENSMUSG00000047215.15_65545707_65548743_1	chr5	-	674	8	NNC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5024.93303031828	95357	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548743	65545706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_65545765_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
ENSMUSG00000047215.15_65545707_65548743_2	chr5	-	685	8	NNC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	4864.31151660872	269239	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548743	65545706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548090_65548198_65548288_65548336_65548718
ENSMUSG00000047215.15_65545707_65548743_3	chr5	-	814	7	FSM	ENSMUSG00000047215.15	ENSMUST00000120094.5	680	7	-20	-114	-1	0	multi-exon	FALSE	canonical	3	5084	junction_6	3284.20622914511	93191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548743	65545706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
ENSMUSG00000047215.15_65545707_65548743_4	chr5	-	809	8	NNC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	4693.52462311162	151637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548743	65545706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548603
ENSMUSG00000047215.15_65545707_65548743_5	chr5	-	681	8	NNC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-1	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	5024.93303031828	271826	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548743	65545706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_65545772_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
ENSMUSG00000047260.5_73067022_73067863_1	chr11	-	655	2	FSM	ENSMUSG00000047260.5	ENSMUST00000054952.4	1332	2	0	677	0	140	multi-exon	FALSE	canonical	3	946	junction_1	0	5240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTCGTTCCTTGCTTAG	NA	False	NA	-22	True	ATTAAA	-13	NA	73067863	73067021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_73067578_73067764
ENSMUSG00000047260.5_73067162_73067863_1	chr11	-	515	2	FSM	ENSMUSG00000047260.5	ENSMUST00000054952.4	1332	2	0	817	0	0	multi-exon	FALSE	canonical	3	946	junction_1	0	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTCTTGCCAGAATTAAC	NA	False	NA	NA	False	TTTAAA	-12	NA	73067863	73067161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_73067578_73067764
ENSMUSG00000047342.18_62670431_62680243_1	chr11	-	1673	5	NIC	ENSMUSG00000047342.18	novel	679	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_2	17.8535710713571	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGGGGTGTGTCTGTGTG	NA	False	NA	-5	True	AATAGA	-16	NA	62680243	62670430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_62671726_62674497_62674588_62678784_62678871_62679755_62679916_62680201
ENSMUSG00000047342.18_62670431_62680243_2	chr11	-	1788	6	FSM	ENSMUSG00000047342.18	ENSMUST00000054654.13	3051	6	45	1218	0	0	multi-exon	FALSE	canonical	3	31	junction_3	11.4262854856686	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGGGGTGTGTCTGTGTG	NA	False	NA	-5	True	AATAGA	-16	NA	62680243	62670430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_62671726_62674497_62674588_62675704_62675820_62678784_62678871_62679755_62679916_62680201
ENSMUSG00000047361.17_59672340_59675576_1	chr1	+	692	3	ISM	ENSMUSG00000047361.17	ENSMUST00000190490.2	933	5	2858	0	2858	0	3prime_fragment	FALSE	canonical	3	7	junction_1	0.5	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTTGTTTTCTTTAGGA	1499	False	NA	NA	False	AATAAA	-18	NA	59672339	59675576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_59672479_59673152_59673373_59675243
ENSMUSG00000047407.18_71151206_71156802_1	chr17	-	1450	3	NIC	ENSMUSG00000047407.18	novel	1714	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	428.5	1017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAATGAAGAGCATTTTC	NA	False	NA	78	True	AATAAA	-20	NA	71156802	71151205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_71152268_71153166_71153394_71156641
ENSMUSG00000047407.18_71151206_71158064_1	chr17	-	1487	3	FSM	ENSMUSG00000047407.18	ENSMUST00000059775.15	1631	3	138	6	0	0	multi-exon	FALSE	canonical	3	373	junction_2	253.5	1601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAATGAAGAGCATTTTC	NA	False	NA	78	True	AATAAA	-20	NA	71158064	71151205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_71152268_71153166_71153394_71157866
ENSMUSG00000047417.19_80385878_80397394_1	chr10	-	1319	2	ISM	ENSMUSG00000047417.19	ENSMUST00000057910.16	5250	15	0	9119	0	-2717	5prime_fragment	FALSE	canonical	3	427	junction_1	0	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAAGACCCAGCCAGGCC	9421	False	NA	NA	False	AAAAAG	-4	NA	80397394	80385877	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_80386900_80397097
ENSMUSG00000047446.19_40085821_40087375_1	chr12	-	1126	2	FSM	ENSMUSG00000047446.19	ENSMUST00000146905.2	3710	2	53	2531	0	0	multi-exon	FALSE	canonical	3	67	junction_1	0	314	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCCTAGTGTTTTGTGCT	NA	False	NA	-7	True	AATAAA	-15	NA	40087375	40085820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_40086833_40087261
ENSMUSG00000047459.15_155078731_155092193_1	chr2	+	723	4	FSM	ENSMUSG00000047459.15	ENSMUST00000150602.2	788	4	203	-138	0	1	multi-exon	FALSE	canonical	2	4	junction_1	813.64788999228	9009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTTGTGTCTTTAC	NA	False	NA	15	True	AGTAAA	-17	NA	155078730	155092193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_155078857_155084650_155084727_155089690_155089859_155091840
ENSMUSG00000047473.15_29483448_29489215_1	chr7	+	1544	4	ISM	ENSMUSG00000047473.15	ENSMUST00000032803.12	3558	5	25	4912	0	-2122	5prime_fragment	FALSE	canonical	3	6	junction_3	9.62635271879577	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATTTGTATGGTTGCT	NA	False	NA	NA	False	AAGAAA	-12	NA	29483447	29489215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_29484327_29485643_29485729_29487473_29487601_29488762
ENSMUSG00000047507.13_25459144_25461772_1	chr17	-	1171	6	NNC	ENSMUSG00000047507.13	novel	1295	2	NA	NA	1235	2489	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	631	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTGAGGGGAGTCAGTT	NA	False	NA	NA	False	NA	NA	NA	25461772	25459143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_25459339_25459417_25459617_25460037_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUSG00000047507.13_25459144_25461772_2	chr17	-	1592	5	NIC	ENSMUSG00000047507.13	novel	1295	2	NA	NA	1235	2489	intron_retention	FALSE	non_canonical	0	0	junction_1	0	190	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTGAGGGGAGTCAGTT	NA	False	NA	NA	False	NA	NA	NA	25461772	25459143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_25459339_25459417_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUSG00000047507.13_25459144_25461772_3	chr17	-	1271	5	NIC	ENSMUSG00000047507.13	novel	1295	2	NA	NA	1235	2489	intron_retention	FALSE	non_canonical	0	0	junction_1	0	953	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTGAGGGGAGTCAGTT	NA	False	NA	NA	False	NA	NA	NA	25461772	25459143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_25459638_25460037_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUSG00000047507.13_25459144_25461772_4	chr17	-	972	5	NIC	ENSMUSG00000047507.13	novel	1295	2	NA	NA	1235	2489	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	338	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTGAGGGGAGTCAGTT	NA	False	NA	NA	False	NA	NA	NA	25461772	25459143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_25459339_25460037_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUSG00000047507.13_25459144_25461772_5	chr17	-	1216	6	NNC	ENSMUSG00000047507.13	novel	1295	2	NA	NA	1235	2489	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2128	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTGAGGGGAGTCAGTT	NA	False	NA	NA	False	NA	NA	NA	25461772	25459143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_25459339_25459417_25459638_25460013_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUSG00000047515.9_136790652_136805141_1	chr6	+	2649	12	NIC	ENSMUSG00000047515.9	novel	323	2	NA	NA	-13972	-5021	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	891	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTCCGCCAGCTCACGT	NA	False	NA	NA	False	NA	NA	NA	136790651	136805141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_136791640_136793048_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803108_136805017
ENSMUSG00000047534.18_65179508_65190127_1	chr12	-	1488	6	ISM	ENSMUSG00000047534.18	ENSMUST00000052201.9	4017	14	29227	0	-4635	0	3prime_fragment	FALSE	canonical	3	333	junction_4	36.8315082504097	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTGGGTTTGTT	NA	False	NA	-5	True	AATAAA	-18	NA	65190127	65179507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996
ENSMUSG00000047534.18_65199552_65219363_1	chr12	-	1580	7	ISM	ENSMUSG00000047534.18	ENSMUST00000052201.9	4017	14	-9	20044	9	0	5prime_fragment	FALSE	canonical	3	216	junction_5	67.8298524905435	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATCAAAAAAAAAAGAT	NA	False	NA	NA	False	AAAAAG	-41	NA	65219363	65199551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
ENSMUSG00000047547.15_54740758_54759157_1	chr13	-	1642	5	FSM	ENSMUSG00000047547.15	ENSMUST00000091609.11	2186	5	0	544	0	-544	multi-exon	FALSE	canonical	3	406	junction_1	26.0708170182678	2512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTGCCTTAGAGCATC	7405	False	NA	NA	False	NA	NA	NA	54759157	54740757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_54741856_54746534_54746647_54746856_54746975_54754456_54754504_54758890
ENSMUSG00000047547.15_54741398_54759105_1	chr13	-	947	4	NNC	ENSMUSG00000047547.15	novel	1004	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	207.837008788671	1126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTAGTATCCTCATTTC	7457	False	NA	-35	True	NA	NA	NA	54759105	54741397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_54741856_54746534_54746647_54746856_54747019_54758890
ENSMUSG00000047547.15_54741398_54759157_1	chr13	-	1002	5	FSM	ENSMUSG00000047547.15	ENSMUST00000091609.11	2186	5	0	1184	0	0	multi-exon	FALSE	canonical	3	406	junction_1	26.0708170182678	2331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTAGTATCCTCATTTC	7405	False	NA	-35	True	NA	NA	NA	54759157	54741397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_54741856_54746534_54746647_54746856_54746975_54754456_54754504_54758890
ENSMUSG00000047554.15_109572692_109585456_1	chr7	-	2340	7	FSM	ENSMUSG00000047554.15	ENSMUST00000094097.12	3840	7	202	1298	0	0	multi-exon	TRUE	canonical	3	346	junction_6	24.644133852366	914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTATCTGTCTTCTGTC	NA	False	NA	-5	True	AATACA	-21	NA	109585456	109572691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109581862_109581981_109585168
ENSMUSG00000047554.15_109573054_109585456_1	chr7	-	1978	7	FSM	ENSMUSG00000047554.15	ENSMUST00000094097.12	3840	7	202	1660	0	-362	multi-exon	FALSE	canonical	3	346	junction_6	24.644133852366	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCATGCATGATACATC	NA	False	NA	-15	True	ATTAAA	-17	NA	109585456	109573053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109581862_109581981_109585168
ENSMUSG00000047554.15_109573509_109585369_1	chr7	-	1435	7	NNC	ENSMUSG00000047554.15	novel	3840	7	NA	NA	0	170	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	143.733163265206	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTTGAAGCAAAAATGAGT	NA	False	NA	NA	False	NA	NA	NA	109585369	109573508	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580320_109581858_109581981_109585168
ENSMUSG00000047554.15_109573509_109585456_1	chr7	-	1523	7	FSM	ENSMUSG00000047554.15	ENSMUST00000094097.12	3840	7	202	2115	0	170	multi-exon	FALSE	canonical	3	346	junction_6	24.644133852366	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTTGAAGCAAAAATGAGT	NA	False	NA	NA	False	NA	NA	NA	109585456	109573508	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109581862_109581981_109585168
ENSMUSG00000047583.10_154285482_154302732_1	chr3	-	1076	6	FSM	ENSMUSG00000047583.10	ENSMUST00000052774.8	4490	6	0	3414	0	0	multi-exon	FALSE	canonical	3	59	junction_2	5.35163526410386	433	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATGTCAAATAGGAAAAG	NA	False	NA	-15	True	AATAAA	-21	NA	154302732	154285481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_154285929_154293113_154293248_154296720_154296793_154299353_154299453_154300090_154300172_154302489
ENSMUSG00000047603.10_23833632_23836549_1	chr7	+	418	3	ISM	ENSMUSG00000047603.10	ENSMUST00000205680.2	1332	5	11	3820	0	210	5prime_fragment	TRUE	canonical	3	44	junction_2	1	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACCATGATGTGATGCTG	NA	False	NA	NA	False	NA	NA	NA	23833631	23836549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_23833913_23834682_23834741_23836470
ENSMUSG00000047603.10_23833632_23836975_1	chr7	+	844	3	ISM	ENSMUSG00000047603.10	ENSMUST00000205680.2	1332	5	11	3394	0	636	5prime_fragment	FALSE	canonical	3	44	junction_2	1	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGAGTGTGTGTGCATT	NA	False	NA	NA	False	AATAAA	-24	NA	23833631	23836975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_23833913_23834682_23834741_23836470
ENSMUSG00000047613.11_154041712_154046382_1	chr4	+	1577	3	ISM	ENSMUSG00000047613.11	ENSMUST00000058393.9	1098	4	18	0	0	0	intron_retention	FALSE	canonical	3	743	junction_1	52	1413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGTTCACAAAAGTGT	NA	False	NA	NA	False	AATAAA	-29	NA	154041711	154046382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_154041780_154044205_154044320_154044987
ENSMUSG00000047617.12_25349497_25350960_1	chr2	-	832	7	FSM	ENSMUSG00000047617.12	ENSMUST00000114261.9	981	7	146	3	0	0	multi-exon	FALSE	canonical	3	6	junction_6	3.94405318873308	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTTGAGTTGTGAAGATT	5382	False	NA	-7	True	AATAAA	-29	NA	25350960	25349496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25349714_25349786_25349872_25350020_25350087_25350178_25350370_25350456_25350507_25350666_25350728_25350798
ENSMUSG00000047648.14_11157074_11165979_1	chr10	+	887	2	ISM	ENSMUSG00000047648.14	ENSMUST00000129456.8	5060	3	0	7817	0	-5283	5prime_fragment	FALSE	canonical	3	887	junction_1	0	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACTTGAAAGACCAGGAC	7592	False	NA	NA	False	AAGAAA	-13	NA	11157073	11165979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_11157245_11165263
ENSMUSG00000047648.14_11157074_11171265_1	chr10	+	2529	3	FSM	ENSMUSG00000047648.14	ENSMUST00000129456.8	5060	3	0	2531	0	3	multi-exon	FALSE	canonical	3	746	junction_2	70.5	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATTGTCACTATGTATAT	7592	False	NA	NA	False	ATTAAA	-18	NA	11157073	11171265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_11157245_11165263_11167317_11170960
ENSMUSG00000047648.14_11157074_11171976_1	chr10	+	3240	3	FSM	ENSMUSG00000047648.14	ENSMUST00000129456.8	5060	3	0	1820	0	714	multi-exon	FALSE	canonical	3	746	junction_2	70.5	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTTGACTTTTTGAGGGG	7592	False	NA	NA	False	AATAAA	-23	NA	11157073	11171976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_11157245_11165263_11167317_11170960
ENSMUSG00000047649.10_19079026_19090449_1	chr7	-	1046	10	NNC	ENSMUSG00000047649.10	novel	2239	3	NA	NA	2957	10913	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	663	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCCGCTCTGGCCCTTCGC	5115	False	NA	NA	False	NA	NA	NA	19090449	19079025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19079122_19079530_19079643_19082331_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088250_19088351_19089025_19089098_19089217_19089287_19090343
ENSMUSG00000047649.10_19079026_19090449_2	chr7	-	1059	10	NNC	ENSMUSG00000047649.10	novel	2239	3	NA	NA	2957	10913	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	367	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCCGCTCTGGCCCTTCGC	5115	False	NA	NA	False	NA	NA	NA	19090449	19079025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19079122_19079530_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088250_19088351_19089025_19089105_19089217_19089287_19090343
ENSMUSG00000047649.10_19079026_19090449_3	chr7	-	1047	10	NIC	ENSMUSG00000047649.10	novel	2239	3	NA	NA	2957	10913	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	388	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCCGCTCTGGCCCTTCGC	5115	False	NA	NA	False	NA	NA	NA	19090449	19079025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_19079122_19079530_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088255_19088351_19089025_19089098_19089217_19089287_19090343
ENSMUSG00000047649.10_19087244_19093408_1	chr7	-	455	3	NNC	ENSMUSG00000047649.10	novel	489	2	NA	NA	0	2695	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_1	107	182	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACGATTTCACAGGCCTT	2156	False	NA	NA	False	NA	NA	NA	19093408	19087243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19087461_19093014_19093157_19093312
ENSMUSG00000047649.10_19089939_19093408_1	chr7	-	2206	4	NNC	ENSMUSG00000047649.10	novel	2239	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	112.490987293304	1498	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAATGTCTTACTTTTG	2156	False	NA	-19	True	NA	NA	NA	19093408	19089938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19090089_19090123_19091942_19093014_19093157_19093312
ENSMUSG00000047656.10_6976339_6991503_1	chr19	+	1761	11	NIC	ENSMUSG00000047656.10	novel	1103	7	NA	NA	2799	15089	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGGCCGGCTCAGCATG	1117	False	NA	NA	False	NA	NA	NA	6976338	6991503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_6976889_6977006_6977149_6979124_6979250_6979580_6979821_6979937_6980045_6980189_6980315_6980398_6980449_6980536_6980672_6980835_6980944_6991215_6991319_6991427
ENSMUSG00000047675.16_117011031_117013281_1	chr4	-	694	6	FSM	ENSMUSG00000047675.16	ENSMUST00000102696.5	860	6	159	7	0	0	multi-exon	FALSE	canonical	3	8358	junction_5	1894.95893359197	170887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTAGGTGTTTGGAG	NA	False	NA	-20	True	AATAAA	-23	NA	117013281	117011030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_117011185_117011495_117011626_117011834_117012011_117012204_117012305_117012767_117012875_117013254
ENSMUSG00000047694.13_97981813_97988737_1	chrX	+	879	7	FSM	ENSMUSG00000047694.13	ENSMUST00000054697.7	5211	7	446	3886	0	0	multi-exon	FALSE	canonical	3	206	junction_6	19.4736288919714	886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGATATTTGCAAGGCT	NA	False	NA	26	True	ATTAAA	-36	NA	97981812	97988737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_97981895_97983378_97983508_97983727_97983807_97984392_97984436_97986383_97986513_97987083_97987242_97988478
ENSMUSG00000047694.13_97981813_97989181_1	chrX	+	1323	7	FSM	ENSMUSG00000047694.13	ENSMUST00000054697.7	5211	7	446	3442	0	444	multi-exon	FALSE	canonical	3	206	junction_6	19.4736288919714	975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTGTATACTTACTTT	NA	False	NA	NA	False	TTTAAA	-2	NA	97981812	97989181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_97981895_97983378_97983508_97983727_97983807_97984392_97984436_97986383_97986513_97987083_97987242_97988478
ENSMUSG00000047714.15_31072854_31093931_1	chr16	-	1410	6	NNC	ENSMUSG00000047714.15	novel	4078	6	NA	NA	-121	-2499	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	401.875801709931	1052	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGCTCTGCTTGTCTTC	NA	False	NA	-7	True	AATAAA	-36	NA	31093931	31072853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_31073552_31077154_31077323_31079391_31079482_31080047_31080126_31084122_31084231_31093663
ENSMUSG00000047714.15_31072854_31094095_1	chr16	-	1574	6	NNC	ENSMUSG00000047714.15	novel	4078	6	NA	NA	0	-2499	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	405.029184133687	1254	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGCTCTGCTTGTCTTC	NA	False	NA	-7	True	AATAAA	-36	NA	31094095	31072853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_31073552_31077154_31077318_31079391_31079487_31080047_31080126_31084122_31084231_31093663
ENSMUSG00000047714.15_31076793_31093931_2	chr16	-	1074	5	NNC	ENSMUSG00000047714.15	novel	958	5	NA	NA	-121	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	449.29743767353	374	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTTGCTTTGTTTTTTG	NA	False	NA	73	True	ATTAAA	-38	NA	31093931	31076792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_31077323_31079391_31079482_31080047_31080126_31084122_31084231_31093663
ENSMUSG00000047714.15_31076793_31094095_1	chr16	-	1238	5	NNC	ENSMUSG00000047714.15	novel	958	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	449.29743767353	604	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTTGCTTTGTTTTTTG	NA	False	NA	73	True	ATTAAA	-38	NA	31094095	31076792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_31077323_31079391_31079482_31080047_31080126_31084122_31084231_31093663
ENSMUSG00000047714.15_31076793_31094095_2	chr16	-	1238	5	NNC	ENSMUSG00000047714.15	novel	958	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	452.558007331657	616	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTTGCTTTGTTTTTTG	NA	False	NA	73	True	ATTAAA	-38	NA	31094095	31076792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_31077318_31079391_31079487_31080047_31080126_31084122_31084231_31093663
ENSMUSG00000047721.9_126289850_126294811_1	chr7	+	1797	6	NIC	ENSMUSG00000047721.9	novel	1266	3	NA	NA	-4723	-1048	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCTGGGACCTCGGACC	NA	False	NA	NA	False	NA	NA	NA	126289849	126294811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_126290828_126290910_126290996_126291099_126291228_126291492_126291832_126291924_126291977_126294596
ENSMUSG00000047721.9_126289850_126294917_1	chr7	+	1903	6	NIC	ENSMUSG00000047721.9	novel	1266	3	NA	NA	-4723	-942	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGCGACTTGCTGCGCC	NA	False	NA	NA	False	AAAAAG	-37	NA	126289849	126294917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_126290828_126290910_126290996_126291099_126291228_126291492_126291832_126291924_126291977_126294596
ENSMUSG00000047721.9_126289850_126294917_2	chr7	+	1851	5	NIC	ENSMUSG00000047721.9	novel	1266	3	NA	NA	-4723	-942	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGCGACTTGCTGCGCC	NA	False	NA	NA	False	AAAAAG	-37	NA	126289849	126294917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_126290828_126290910_126290996_126291099_126291228_126291492_126291832_126294596
ENSMUSG00000047721.9_126294573_126295869_1	chr7	+	940	3	FSM	ENSMUSG00000047721.9	ENSMUST00000130498.2	1266	3	-35	361	0	0	multi-exon	FALSE	canonical	3	2284	junction_2	148	31195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTCTCAGTGTGCTGTT	576	False	NA	22	True	ATTAAA	-17	NA	126294572	126295869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126295272_126295354_126295453_126295726
ENSMUSG00000047721.9_126295138_126295869_2	chr7	+	277	2	NIC	ENSMUSG00000047721.9	novel	333	3	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	66	junction_1	0	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTCTCAGTGTGCTGTT	1141	False	NA	22	True	ATTAAA	-17	NA	126295137	126295869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_126295272_126295726
ENSMUSG00000047721.9_126295138_126296023_1	chr7	+	529	3	FSM	ENSMUSG00000047721.9	ENSMUST00000130498.2	1266	3	530	207	0	154	multi-exon	FALSE	canonical	3	2284	junction_2	148	30085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCCAAGGCTTTACTGT	1141	False	NA	NA	False	AATGAA	-15	NA	126295137	126296023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126295272_126295354_126295453_126295726
ENSMUSG00000047721.9_126298945_126300399_1	chr7	+	869	5	Genic_Genomic	ENSMUSG00000047721.9	novel	3796	1	NA	NA	3770	1429	multi-exon	FALSE	non_canonical	0	0	junction_1	0	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTAGAGTAAGCGTCTAG	4948	False	NA	NA	False	NA	NA	NA	126298944	126300399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_126299158_126299428_126299645_126299755_126299814_126299911_126300058_126300163
ENSMUSG00000047733.11_6130795_6134960_1	chr19	+	1340	8	NIC	ENSMUSG00000047733.11	novel	545	3	NA	NA	732	4142	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1235	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGGGTGCGGCGCACGCT	NA	False	NA	NA	False	NA	NA	NA	6130794	6134960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134824
ENSMUSG00000047821.17_62711266_62732140_1	chr11	+	2075	6	FSM	ENSMUSG00000047821.17	ENSMUST00000055006.12	3906	6	209	1622	0	-143	multi-exon	TRUE	canonical	3	37	junction_4	2.33238075793812	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGCGTTTGGAGTGCTTT	NA	False	NA	26	True	AATAAA	-36	NA	62711265	62732140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_62711826_62719928_62720025_62724804_62725039_62727504_62727671_62728060_62728157_62731217
ENSMUSG00000047844.4_135039745_135041192_1	chrX	+	830	3	NNC	ENSMUSG00000047844.4	novel	837	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1184.5	39317	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGCTCAGTCATCTTCT	NA	False	NA	NA	False	AATAAA	-17	NA	135039744	135041192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_135039916_135040278_135040349_135040603
ENSMUSG00000047878.14_83110923_83135932_1	chr15	-	2132	3	FSM	ENSMUSG00000047878.14	ENSMUST00000164614.3	1974	3	0	-158	0	0	multi-exon	FALSE	canonical	3	30	junction_2	34	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATGCCTCATGGTCACA	2266	False	NA	-8	True	AATAAA	-16	NA	83135932	83110922	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_83112796_83114714_83114859_83135817
ENSMUSG00000047879.18_9958180_9993725_1	chr18	-	2296	20	NNC	ENSMUSG00000047879.18	novel	4726	16	NA	NA	6807	34886	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1184	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCACCACTGCACTGCGGC	NA	False	NA	NA	False	NA	NA	NA	9993725	9958179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9962372_9962492_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986604_9986690_9986762_9987069_9987166_9987598_9987669_9989690_9989775_9992127_9992276_9992832_9992908_9993320
ENSMUSG00000047879.18_9995433_10030067_1	chr18	-	2285	16	FSM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	74	2367	0	161	multi-exon	FALSE	canonical	3	792	junction_3	60.9526592255553	1003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTTTTGACATTTCTTTT	14	True	NA	-1	True	AATAAA	-23	NA	10030067	9995432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
ENSMUSG00000047879.18_9995594_10030022_1	chr18	-	2079	16	FSM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	119	2528	0	0	multi-exon	FALSE	canonical	3	792	junction_3	60.9526592255553	772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACACTTGATTATACACT	59	True	NA	-65	True	AATAAA	-15	NA	10030022	9995593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
ENSMUSG00000047879.18_9995594_10030141_1	chr18	-	2198	16	FSM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	0	2528	0	0	multi-exon	FALSE	canonical	3	792	junction_3	60.9526592255553	857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACACTTGATTATACACT	-60	True	NA	-65	True	AATAAA	-15	NA	10030141	9995593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
ENSMUSG00000047881.15_64066408_64088120_1	chr5	-	2763	4	ISM	ENSMUSG00000047881.15	ENSMUST00000087327.13	3093	8	38046	0	0	0	3prime_fragment	FALSE	canonical	3	541	junction_1	12.2565175405668	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGCGACATCTTACAGGA	5422	False	NA	-13	True	AATAAA	-23	NA	64088120	64066407	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820
ENSMUSG00000047881.15_64066408_64126240_1	chr5	-	3073	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	0	168	0	0	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGCGACATCTTACAGGA	NA	False	NA	-13	True	AATAAA	-23	NA	64126240	64066407	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
ENSMUSG00000047881.15_64066860_64126166_1	chr5	-	2547	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	74	620	0	-452	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGCAAAGATATTTAAGAT	NA	False	NA	NA	False	NA	NA	NA	64126166	64066859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
ENSMUSG00000047881.15_64066979_64126240_1	chr5	-	2502	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	0	739	0	-571	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGTCCTTTAAATGGTGA	NA	False	NA	NA	False	AAAAAG	-29	NA	64126240	64066978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
ENSMUSG00000047945.7_129407563_129409296_1	chr4	+	934	2	FSM	ENSMUSG00000047945.7	ENSMUST00000062356.7	1605	2	189	482	189	-482	multi-exon	FALSE	canonical	3	8029	junction_1	0	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCCTGCAGAAGGCAATT	NA	False	NA	NA	False	NA	NA	NA	129407562	129409296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129407710_129408509
ENSMUSG00000047945.7_129407563_129409778_1	chr4	+	1413	2	NNC	ENSMUSG00000047945.7	novel	1605	2	NA	NA	189	0	at_least_one_novel_splicesite	FALSE	canonical	1	24	junction_1	0	1136	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTGGTCTTCTGGGGT	NA	False	NA	24	True	AATAAA	-24	NA	129407562	129409778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_129407710_129408512
ENSMUSG00000047945.7_129407563_129409778_2	chr4	+	1416	2	FSM	ENSMUSG00000047945.7	ENSMUST00000062356.7	1605	2	189	0	189	0	multi-exon	FALSE	canonical	3	8029	junction_1	0	1132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTGGTCTTCTGGGGT	NA	False	NA	24	True	AATAAA	-24	NA	129407562	129409778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129407710_129408509
ENSMUSG00000047989.12_24239431_24254912_1	chr18	-	783	5	FSM	ENSMUSG00000047989.12	ENSMUST00000153360.8	2498	5	98	1617	-20	0	multi-exon	FALSE	canonical	3	634	junction_3	55.0789206502814	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTTGCTTTCTTCCCCTC	NA	False	NA	-124	True	NA	NA	NA	24254912	24239430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_24239716_24244771_24244840_24245717_24245830_24247133_24247245_24254705
ENSMUSG00000047989.12_24239431_24254912_2	chr18	-	776	5	NNC	ENSMUSG00000047989.12	novel	909	6	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	318.017688187308	329	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTTGCTTTCTTCCCCTC	NA	False	NA	-124	True	NA	NA	NA	24254912	24239430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_24239716_24244771_24244833_24245717_24245830_24247133_24247245_24254705
ENSMUSG00000048000.16_87254751_87283445_1	chr1	+	955	4	FSM	ENSMUSG00000048000.16	ENSMUST00000174583.8	3015	4	-1	2061	0	1	multi-exon	FALSE	canonical	3	38	junction_3	78.7922726047562	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATAGTTTCATTGTATG	NA	False	NA	NA	False	AATAAA	-16	NA	87254750	87283445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87282702
ENSMUSG00000048000.16_87254751_87283732_1	chr1	+	1242	4	FSM	ENSMUSG00000048000.16	ENSMUST00000174583.8	3015	4	-1	1774	0	288	multi-exon	FALSE	canonical	3	38	junction_3	78.7922726047562	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTTTCTTCTTAAAGCAC	NA	False	NA	NA	False	ATTAAA	-20	NA	87254750	87283732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87282702
ENSMUSG00000048000.16_87254751_87283939_1	chr1	+	1449	4	FSM	ENSMUSG00000048000.16	ENSMUST00000174583.8	3015	4	-1	1567	0	495	multi-exon	FALSE	canonical	3	38	junction_3	78.7922726047562	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGTTCTTTTTTGTTTCC	NA	False	NA	NA	False	AGTAAA	-32	NA	87254750	87283939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87282702
ENSMUSG00000048000.16_87254751_87293572_1	chr1	+	1009	5	ISM	ENSMUSG00000048000.16	ENSMUST00000173850.8	2520	9	-19	25033	0	195	5prime_fragment	FALSE	canonical	3	140	junction_4	32.0078115465584	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAACAAACATTTAT	NA	False	NA	NA	False	NA	NA	NA	87254750	87293572	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_87254815_87261991_87262057_87282125_87282209_87291825_87291956_87292905
ENSMUSG00000048007.5_133438005_133442390_2	chrX	-	1194	2	NNC	ENSMUSG00000048007.5	novel	1421	2	NA	NA	224	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	12323	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTGACGAAGAGGCTTT	NA	False	NA	-10	True	AATAAA	-16	NA	133442390	133438004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_133439014_133442205
ENSMUSG00000048007.5_133438541_133442390_1	chrX	-	658	2	NNC	ENSMUSG00000048007.5	novel	1421	2	NA	NA	224	-536	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	5388	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTTTCTAGAATTTGATA	NA	False	NA	NA	False	TATAAA	-19	NA	133442390	133438540	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_133439014_133442205
ENSMUSG00000048007.5_133438693_133442390_1	chrX	-	506	2	NNC	ENSMUSG00000048007.5	novel	1421	2	NA	NA	224	-688	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	3314	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGAGAGTCATGTGTATTT	NA	False	NA	NA	False	AATGAA	-26	NA	133442390	133438692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_133439014_133442205
ENSMUSG00000048007.5_133438693_133442390_2	chrX	-	502	2	NNC	ENSMUSG00000048007.5	novel	1421	2	NA	NA	224	-688	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1367	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGAGAGTCATGTGTATTT	NA	False	NA	NA	False	AATGAA	-26	NA	133442390	133438692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_133439019_133442214
ENSMUSG00000048065.9_107349172_107357212_1	chr7	-	1280	10	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_8	11.9484489411289	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACAATGTGTGGATAT	NA	False	NA	-5	True	AATAAA	-19	NA	107357212	107349171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_107349604_107350373_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356818_107356912_107357164
ENSMUSG00000048065.9_107349172_107357212_2	chr7	-	1312	10	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	9.77651506998175	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACAATGTGTGGATAT	NA	False	NA	-5	True	AATAAA	-19	NA	107357212	107349171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_107349604_107350373_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356786_107356912_107357164
ENSMUSG00000048065.9_107351183_107357212_1	chr7	-	1103	8	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	-9	-2011	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_6	11.8528391501095	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGCTTTCATTTGTCTT	NA	False	NA	NA	False	ATTAAA	-42	NA	107357212	107351182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356818_107356912_107357164
ENSMUSG00000048100.14_108479015_108489174_1	chr3	+	1083	4	FSM	ENSMUSG00000048100.14	ENSMUST00000131814.8	596	4	1	-488	0	-211	multi-exon	FALSE	canonical	3	6	junction_1	77.7988860245869	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCGCGGTTCAGGCTTTG	NA	False	NA	NA	False	ATTAAA	-24	NA	108479014	108489174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_108479069_108480195_108480275_108485431_108485530_108488322
ENSMUSG00000048100.14_108479015_108489385_1	chr3	+	1284	4	NNC	ENSMUSG00000048100.14	novel	1655	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	80.6267118681313	2671	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTGAGTTTGTGTTTGC	NA	False	NA	14	True	AATAAA	-23	NA	108479014	108489385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_108479065_108480201_108480275_108485431_108485530_108488322
ENSMUSG00000048100.14_108479015_108489385_2	chr3	+	1294	4	FSM	ENSMUSG00000048100.14	ENSMUST00000131814.8	596	4	1	-699	0	0	multi-exon	FALSE	canonical	3	6	junction_1	77.7988860245869	2685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTGAGTTTGTGTTTGC	NA	False	NA	14	True	AATAAA	-23	NA	108479014	108489385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_108479069_108480195_108480275_108485431_108485530_108488322
ENSMUSG00000048100.14_108479015_108489385_3	chr3	+	1211	3	NIC	ENSMUSG00000048100.14	novel	1655	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	86	955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTGAGTTTGTGTTTGC	NA	False	NA	14	True	AATAAA	-23	NA	108479014	108489385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_108479065_108485431_108485530_108488322
ENSMUSG00000048109.11_107233257_107240417_1	chr3	-	979	2	NNC	ENSMUSG00000048109.11	novel	4343	2	NA	NA	0	-520	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	0	104	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTCTGCCTGGAAGTG	NA	False	NA	-5	True	AATAAA	-20	NA	107240417	107233256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_107233621_107239802
ENSMUSG00000048118.18_71062803_71109948_1	chr12	+	1439	15	ISM	ENSMUSG00000048118.18	ENSMUST00000046305.12	4998	24	39	35418	0	-4087	5prime_fragment	FALSE	canonical	3	75	junction_5	9.00141712199149	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGGAAAAAAAAGACTTTGA	3420	False	NA	NA	False	AGTAAA	-2	NA	71062802	71109948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_71062936_71063864_71063923_71066147_71066259_71068966_71069033_71070273_71070365_71083883_71083964_71084044_71084140_71086612_71086746_71091797_71091878_71092887_71092965_71093967_71094135_71106835_71106909_71108055_71108151_71108304_71108403_71109866
ENSMUSG00000048175.14_98032518_98043540_1	chr15	-	2130	4	FSM	ENSMUSG00000048175.14	ENSMUST00000123626.8	1100	4	47	-1077	0	0	multi-exon	FALSE	canonical	3	84	junction_3	16.7531091641721	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCACTTCCAGTTTCT	NA	False	NA	0	True	AATAAA	-21	NA	98043540	98032517	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98034320_98039164_98039270_98040531_98040696_98043481
ENSMUSG00000048240.15_80787308_80850747_1	chr10	-	500	4	FSM	ENSMUSG00000048240.15	ENSMUST00000092285.10	3362	4	12	2850	0	238	multi-exon	FALSE	canonical	2	3	junction_3	3.68178700572909	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTGACCTAGCTGGAG	4456	False	NA	NA	False	NA	NA	NA	80850747	80787307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80787581_80788664_80788781_80833825_80833879_80850689
ENSMUSG00000048277.16_117700494_117705109_1	chr11	+	1380	3	FSM	ENSMUSG00000048277.16	ENSMUST00000175737.2	785	3	-44	-551	0	0	multi-exon	FALSE	canonical	3	9	junction_2	289.5	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTTGTGCTGGGTGGCGC	NA	False	NA	14	True	AATAAA	-14	NA	117700493	117705109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_117700630_117703284_117703523_117704103
ENSMUSG00000048281.10_62529901_62609960_1	chr14	-	1107	11	NIC	ENSMUSG00000048281.10	novel	1535	3	NA	NA	-79464	-16220	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	4456	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTCAACCTGCTGTGAGC	NA	False	NA	NA	False	NA	NA	NA	62609960	62529900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_62530104_62584016_62584092_62585969_62586078_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
ENSMUSG00000048327.7_129110130_129112527_1	chr2	-	1087	2	ISM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	26605	0	26605	0	3prime_fragment	FALSE	canonical	3	306	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCCTGTTGTTCTCTT	NA	False	NA	0	True	AATAAA	-20	NA	129112527	129110129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_129111184_129112494
ENSMUSG00000048327.7_129123941_129139132_1	chr2	-	1550	5	ISM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	0	13811	0	-13811	5prime_fragment	FALSE	canonical	3	281	junction_1	16.9263108798108	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCATAGAGGAAATGAACAC	NA	False	NA	NA	False	TATAAA	-34	NA	129139132	129123940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_129124020_129126776_129128021_129132877_129132930_129138233_129138301_129139024
ENSMUSG00000048330.15_108645952_108682521_1	chr7	-	1895	5	ISM	ENSMUSG00000048330.15	ENSMUST00000120876.2	1633	6	8	8797	-3	-1363	5prime_fragment	FALSE	canonical	3	26	junction_1	16.0312195418814	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAATTGCATCATTTTCTT	NA	False	NA	NA	False	ATTAAA	-23	NA	108682521	108645951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_108647301_108653571_108653666_108655950_108656024_108656989_108657217_108682369
ENSMUSG00000048351.15_108185375_108195648_1	chr4	+	583	3	FSM	ENSMUSG00000048351.15	ENSMUST00000131656.2	3714	3	38	3093	0	0	multi-exon	FALSE	canonical	3	432	junction_2	33.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACAAGCTGGGAGATGG	NA	False	NA	NA	False	NA	NA	NA	108185374	108195648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_108185488_108189407_108189549_108195319
ENSMUSG00000048351.15_108185375_108195925_1	chr4	+	847	3	NNC	ENSMUSG00000048351.15	novel	341	4	NA	NA	0	45	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	249.5	4466	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTGAAGACACCTACGT	NA	False	NA	34	True	AGTAAA	-17	NA	108185374	108195925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_108185488_108189407_108189536_108195319
ENSMUSG00000048351.15_108185375_108195925_2	chr4	+	749	4	NNC	ENSMUSG00000048351.15	novel	341	4	NA	NA	0	45	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_3	213.186928930145	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTGAAGACACCTACGT	NA	False	NA	34	True	AGTAAA	-17	NA	108185374	108195925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_108185488_108189407_108189549_108195319_108195439_108195549
ENSMUSG00000048351.15_108185375_108195925_3	chr4	+	719	2	NIC	ENSMUSG00000048351.15	novel	341	4	NA	NA	0	45	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTGAAGACACCTACGT	NA	False	NA	34	True	AGTAAA	-17	NA	108185374	108195925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_108185488_108195319
ENSMUSG00000048351.15_108185375_108195925_4	chr4	+	817	3	FSM	ENSMUSG00000048351.15	ENSMUST00000134394.8	565	3	25	-277	0	45	multi-exon	FALSE	canonical	1	8	junction_1	212	3413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTGAAGACACCTACGT	NA	False	NA	34	True	AGTAAA	-17	NA	108185374	108195925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_108185445_108189407_108189549_108195319
ENSMUSG00000048416.16_67281458_67307156_1	chr3	+	911	7	FSM	ENSMUSG00000048416.16	ENSMUST00000077916.12	1114	7	28	175	0	-175	multi-exon	FALSE	canonical	3	41	junction_1	4.04145188432738	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTAGTTGGTTATTTT	NA	False	NA	NA	False	AATAAA	-16	NA	67281457	67307156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_67281596_67291883_67292032_67300224_67300309_67301267_67301397_67302584_67302745_67305113_67305244_67307034
ENSMUSG00000048439.16_24369998_24387835_1	chr5	+	1701	7	FSM	ENSMUSG00000048439.16	ENSMUST00000049887.13	2914	7	37	1176	0	0	multi-exon	TRUE	canonical	3	52	junction_5	7.43116560320265	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCAAGGGACTCTTTTGT	5183	False	NA	NA	False	AATAAA	-20	NA	24369997	24387835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_24370202_24372340_24372564_24374293_24374389_24380451_24380529_24382997_24383085_24386078_24386164_24386905
ENSMUSG00000048445.7_120792510_120823698_1	chr11	-	1408	7	ISM	ENSMUSG00000048445.7	ENSMUST00000056781.5	3403	19	0	75155	0	-27892	5prime_fragment	FALSE	canonical	3	22	junction_2	1.37436854187255	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTACTTGTGATAAGTGT	1471	False	NA	NA	False	NA	NA	NA	120823698	120792509	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_120792902_120794141_120794217_120794348_120794507_120794809_120794912_120810298_120810408_120812345_120812761_120823541
ENSMUSG00000048486.7_163310729_163314549_1	chr2	-	1537	2	FSM	ENSMUSG00000048486.7	ENSMUST00000109418.2	3967	2	0	2430	0	-2430	multi-exon	FALSE	canonical	3	58	junction_1	0	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGCCTGGCACTTGGAT	NA	False	NA	NA	False	NA	NA	NA	163314549	163310728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_163312039_163314322
ENSMUSG00000048495.17_57427399_57445630_1	chr1	-	1214	8	FSM	ENSMUSG00000048495.17	ENSMUST00000162686.8	1847	8	630	3	0	0	multi-exon	FALSE	canonical	3	47	junction_6	29.7341966257639	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTATTGGTGGAGTGGCCG	NA	False	NA	-18	True	AATAAA	-43	NA	57445630	57427398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57433205_57433251_57435885_57435956_57440527_57440683_57445542
ENSMUSG00000048495.17_57445918_57455064_1	chr1	-	1066	5	NNC	ENSMUSG00000048495.17	novel	1847	8	NA	NA	-8804	-13574	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2064	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTGCATGCCTGTGCAG	NA	False	NA	NA	False	NA	NA	NA	57455064	57445917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_57446382_57449070_57449148_57450881_57451009_57452398_57452547_57454814
ENSMUSG00000048497.12_62539490_62557180_1	chr11	+	1878	2	FSM	ENSMUSG00000048497.12	ENSMUST00000155759.3	589	2	-171	-1118	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	NA	False	NA	2	True	NA	NA	NA	62539489	62557180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_62539683_62555495
ENSMUSG00000048497.12_62539490_62557180_2	chr11	+	1370	3	NNC	ENSMUSG00000048497.12	novel	589	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_2	1.5	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	NA	False	NA	2	True	NA	NA	NA	62539489	62557180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_62539683_62555495_62556062_62556569
ENSMUSG00000048497.12_62539643_62556195_1	chr11	+	740	2	FSM	ENSMUSG00000048497.12	ENSMUST00000155759.3	589	2	-18	-133	0	133	multi-exon	FALSE	canonical	3	16	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATATTTATGCCAGGTAC	NA	False	NA	NA	False	NA	NA	NA	62539642	62556195	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_62539683_62555495
ENSMUSG00000048497.12_62539643_62557180_1	chr11	+	1217	3	NNC	ENSMUSG00000048497.12	novel	366	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_2	1.5	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	NA	False	NA	2	True	NA	NA	NA	62539642	62557180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_62539683_62555495_62556062_62556569
ENSMUSG00000048497.12_62539643_62557180_2	chr11	+	1725	2	FSM	ENSMUSG00000048497.12	ENSMUST00000155759.3	589	2	-18	-1118	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	NA	False	NA	2	True	NA	NA	NA	62539642	62557180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_62539683_62555495
ENSMUSG00000048497.12_62539643_62557180_3	chr11	+	1319	4	NNC	ENSMUSG00000048497.12	novel	388	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	4.02768199119819	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	NA	False	NA	2	True	NA	NA	NA	62539642	62557180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_62539683_62540272_62540375_62555495_62556062_62556569
ENSMUSG00000048503.8_43019945_43027839_1	chr9	-	957	3	NIC	ENSMUSG00000048503.8	novel	3503	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	11.5	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCCTTCGTATCTTTGT	NA	False	NA	NA	False	AATAAA	-22	NA	43027839	43019944	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_43020634_43024755_43024956_43027771
ENSMUSG00000048550.18_21210570_21218546_1	chr2	+	2590	3	FSM	ENSMUSG00000048550.18	ENSMUST00000054591.10	3899	3	35	1274	0	456	multi-exon	FALSE	canonical	3	53	junction_1	4.5	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCATTTGCTTTATTTTAT	4819	False	NA	17	True	AATAAA	-26	NA	21210569	21218546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_21210657_21214695_21214853_21216200
ENSMUSG00000048578.12_115285231_115296238_1	chr5	-	1764	5	FSM	ENSMUSG00000048578.12	ENSMUST00000112121.6	5955	5	0	4191	0	934	multi-exon	FALSE	canonical	3	1139	junction_2	31.3249102153542	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCTGTTGAGGACTTGAT	4724	False	NA	-40	True	NA	NA	NA	115296238	115285230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_115286204_115288127_115288186_115288266_115288444_115288874_115289054_115295861
ENSMUSG00000048578.12_115286030_115296000_1	chr5	-	727	5	FSM	ENSMUSG00000048578.12	ENSMUST00000112121.6	5955	5	238	4990	238	135	multi-exon	FALSE	canonical	3	1139	junction_2	31.3249102153542	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTGGCCTTCGGAGTG	4962	False	NA	-2	True	NA	NA	NA	115296000	115286029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_115286204_115288127_115288186_115288266_115288444_115288874_115289054_115295861
ENSMUSG00000048578.12_115286030_115296238_1	chr5	-	965	5	FSM	ENSMUSG00000048578.12	ENSMUST00000112121.6	5955	5	0	4990	0	135	multi-exon	FALSE	canonical	3	1139	junction_2	31.3249102153542	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTGGCCTTCGGAGTG	4724	False	NA	-2	True	NA	NA	NA	115296238	115286029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_115286204_115288127_115288186_115288266_115288444_115288874_115289054_115295861
ENSMUSG00000048603.9_98446404_98453484_1	chr13	+	856	6	Genic_Genomic	ENSMUSG00000048603.9	novel	883	1	NA	NA	-6526	-328	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9584	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGGAGGCCGGAAGTAAC	NA	False	NA	NA	False	NA	NA	NA	98446403	98453484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_98446710_98447488_98447546_98449599_98449780_98450127_98450261_98452737_98452807_98453373
ENSMUSG00000048603.9_98446404_98453484_2	chr13	+	859	6	Genic_Genomic	ENSMUSG00000048603.9	novel	883	1	NA	NA	-6526	-328	multi-exon	FALSE	non_canonical	0	0	junction_1	0	95997	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGGAGGCCGGAAGTAAC	NA	False	NA	NA	False	NA	NA	NA	98446403	98453484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453373
ENSMUSG00000048603.9_98446404_98453484_3	chr13	+	848	6	Genic_Genomic	ENSMUSG00000048603.9	novel	883	1	NA	NA	-6526	-328	multi-exon	FALSE	non_canonical	0	0	junction_1	0	59450	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGGAGGCCGGAAGTAAC	NA	False	NA	NA	False	NA	NA	NA	98446403	98453484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_98446699_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453373
ENSMUSG00000048603.9_98446404_98453484_4	chr13	+	851	6	Genic_Genomic	ENSMUSG00000048603.9	novel	883	1	NA	NA	-6526	-328	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53961	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGGAGGCCGGAAGTAAC	NA	False	NA	NA	False	NA	NA	NA	98446403	98453484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452745_98452807_98453373
ENSMUSG00000048603.9_98446404_98453484_5	chr13	+	849	6	Genic_Genomic	ENSMUSG00000048603.9	novel	883	1	NA	NA	-6526	-328	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23287	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGGAGGCCGGAAGTAAC	NA	False	NA	NA	False	NA	NA	NA	98446403	98453484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_98446710_98447488_98447546_98449599_98449802_98450146_98450247_98452733_98452807_98453373
ENSMUSG00000048603.9_98446404_98453484_6	chr13	+	841	6	Genic_Genomic	ENSMUSG00000048603.9	novel	883	1	NA	NA	-6526	-328	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17858	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGGAGGCCGGAAGTAAC	NA	False	NA	NA	False	NA	NA	NA	98446403	98453484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452755_98452807_98453373
ENSMUSG00000048603.9_98446404_98453484_7	chr13	+	848	6	Genic_Genomic	ENSMUSG00000048603.9	novel	883	1	NA	NA	-6526	-328	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14659	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGGAGGCCGGAAGTAAC	NA	False	NA	NA	False	NA	NA	NA	98446403	98453484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_98446710_98447488_98447531_98449595_98449802_98450146_98450261_98452737_98452807_98453373
ENSMUSG00000048603.9_98446450_98453484_1	chr13	+	805	6	Genic_Genomic	ENSMUSG00000048603.9	novel	883	1	NA	NA	-6480	-328	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1905	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGGAGGCCGGAAGTAAC	NA	False	NA	NA	False	NA	NA	NA	98446449	98453484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452745_98452807_98453373
ENSMUSG00000048636.8_92793459_92815698_1	chr6	+	807	5	NNC	ENSMUSG00000048636.8	novel	2239	5	NA	NA	0	-4748	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	1.5	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGATTTTTTTTCCTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	92793458	92815698	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_92793642_92804897_92805085_92808917_92809046_92811419_92811468_92815437
ENSMUSG00000048644.9_4307944_4309274_1	chr8	-	928	2	FSM	ENSMUSG00000048644.9	ENSMUST00000053252.9	1212	2	0	284	0	-284	multi-exon	FALSE	canonical	3	15	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCTATAATGCACGGTACA	NA	False	NA	NA	False	NA	NA	NA	4309274	4307943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_4308648_4309050
ENSMUSG00000048668.17_128333963_128339884_1	chr6	-	1526	3	FSM	ENSMUSG00000048668.17	ENSMUST00000112151.2	1108	3	-53	-365	-10	0	multi-exon	FALSE	canonical	3	139	junction_2	100.5	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGCCTGTCTCAGTGGTC	421	False	NA	NA	False	CATAAA	-34	NA	128339884	128333962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_128335157_128336068_128336318_128339801
ENSMUSG00000048668.17_128334328_128339658_1	chr6	-	1406	3	FSM	ENSMUSG00000048668.17	ENSMUST00000057421.15	1584	3	173	5	0	0	multi-exon	FALSE	canonical	3	41	junction_2	149.5	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATGCAGCCTCGTGCCC	647	False	NA	-12	True	AATAAA	-36	NA	128339658	128334327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_128335157_128336068_128336318_128339330
ENSMUSG00000048758.15_106306738_106308767_1	chr9	+	1041	3	FSM	ENSMUSG00000048758.15	ENSMUST00000213448.2	845	3	-16	-180	0	0	multi-exon	FALSE	canonical	3	3966	junction_1	565.5	79320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTCTGTTGTCATAG	NA	False	NA	3	True	AATAAA	-19	NA	106306737	106308767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106307214_106307506_106307572_106308267
ENSMUSG00000048758.15_106306738_106308767_2	chr9	+	885	4	FSM	ENSMUSG00000048758.15	ENSMUST00000217081.2	466	4	-23	-396	0	0	multi-exon	FALSE	canonical	3	58	junction_1	2158.78427721613	79138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTCTGTTGTCATAG	NA	False	NA	3	True	AATAAA	-19	NA	106306737	106308767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106307013_106307168_106307214_106307506_106307572_106308267
ENSMUSG00000048758.15_106306906_106308767_1	chr9	+	717	4	FSM	ENSMUSG00000048758.15	ENSMUST00000217081.2	466	4	145	-396	145	0	multi-exon	FALSE	canonical	3	58	junction_1	2158.78427721613	78244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTCTGTTGTCATAG	NA	False	NA	3	True	AATAAA	-19	NA	106306905	106308767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106307013_106307168_106307214_106307506_106307572_106308267
ENSMUSG00000048758.15_106306906_106308767_2	chr9	+	873	3	FSM	ENSMUSG00000048758.15	ENSMUST00000213448.2	845	3	152	-180	145	0	multi-exon	FALSE	canonical	3	3966	junction_1	565.5	78223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTCTGTTGTCATAG	NA	False	NA	3	True	AATAAA	-19	NA	106306905	106308767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106307214_106307506_106307572_106308267
ENSMUSG00000048787.14_119495084_119515976_1	chr7	-	895	4	Genic_Genomic	ENSMUSG00000048787.14	novel	1955	1	NA	NA	-20455	-1517	multi-exon	FALSE	non_canonical	0	0	junction_1	0	200	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTGACGTCACCCTCCTC	7508	False	NA	NA	False	NA	NA	NA	119515976	119495083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_119495114_119509026_119509186_119513395_119513489_119515363
ENSMUSG00000048787.14_119495084_119515976_2	chr7	-	1028	4	Genic_Genomic	ENSMUSG00000048787.14	novel	1955	1	NA	NA	-20455	-1517	multi-exon	FALSE	non_canonical	0	0	junction_1	0	184	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTGACGTCACCCTCCTC	7508	False	NA	NA	False	NA	NA	NA	119515976	119495083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_119495114_119508893_119509186_119513395_119513489_119515363
ENSMUSG00000048799.9_53876376_53877680_1	chr18	-	1165	2	FSM	ENSMUSG00000048799.9	ENSMUST00000235928.2	474	2	-68	-623	0	623	multi-exon	FALSE	canonical	3	229	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACACAGTGTAAAATT	NA	False	NA	NA	False	AAGAAA	-14	NA	53877680	53876375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_53877420_53877559
ENSMUSG00000048833.10_80691000_80728081_1	chr12	+	3184	7	FSM	ENSMUSG00000048833.10	ENSMUST00000085245.7	5201	7	-13	2030	0	1432	multi-exon	FALSE	canonical	3	88	junction_2	10.9455724179028	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATACTGTATTTATATTTT	NA	False	NA	NA	False	AATAAA	-20	NA	80690999	80728081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_80691751_80709243_80709353_80713308_80713510_80719999_80720069_80722622_80722709_80723905_80724041_80726248
ENSMUSG00000048897.16_79674582_79731434_1	chr7	+	791	2	ISM	ENSMUSG00000048897.16	ENSMUST00000166250.8	3606	6	0	10144	0	517	5prime_fragment	FALSE	canonical	3	198	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGGCACTACCTGGACCA	NA	False	NA	NA	False	NA	NA	NA	79674581	79731434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_79674735_79730796
ENSMUSG00000048921.12_127042927_127048330_1	chr7	-	2002	3	FSM	ENSMUSG00000048921.12	ENSMUST00000053392.11	3621	3	0	1619	0	0	multi-exon	FALSE	canonical	3	47	junction_1	4.5	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACTTGTCTTAAAATAATA	4357	False	NA	-3	True	ATTAAA	-12	NA	127048330	127042926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127044310_127047534_127047649_127047825
ENSMUSG00000048922.19_67914165_67952855_1	chr14	-	3276	15	FSM	ENSMUSG00000048922.19	ENSMUST00000163100.8	3841	15	204	361	-31	-361	multi-exon	FALSE	canonical	0	0	junction_2	110.056131318597	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGAAATACATTAATTTCT	NA	False	NA	-13	True	AATAAA	-27	NA	67952855	67914164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_67915472_67917610_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
ENSMUSG00000048930.13_113343616_113354347_1	chr6	-	1775	10	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	134	junction_9	97.0713114476818	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATAAAAAAACCACCCGC	NA	False	NA	18	True	AATAAA	-36	NA	113354347	113343615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354276
ENSMUSG00000048930.13_113343616_113354347_3	chr6	-	1721	9	FSM	ENSMUSG00000048930.13	ENSMUST00000032410.14	2848	9	497	630	-10	0	multi-exon	FALSE	canonical	3	225	junction_8	58.2875415504892	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATAAAAAAACCACCCGC	NA	False	NA	18	True	AATAAA	-36	NA	113354347	113343615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113354276
ENSMUSG00000048930.13_113343616_113354478_1	chr6	-	1906	10	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	134	junction_9	97.0713114476818	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATAAAAAAACCACCCGC	NA	False	NA	18	True	AATAAA	-36	NA	113354478	113343615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354276
ENSMUSG00000048930.13_113343616_113354478_2	chr6	-	1852	9	FSM	ENSMUSG00000048930.13	ENSMUST00000032410.14	2848	9	366	630	0	0	multi-exon	FALSE	canonical	3	225	junction_8	58.2875415504892	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATAAAAAAACCACCCGC	NA	False	NA	18	True	AATAAA	-36	NA	113354478	113343615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113354276
ENSMUSG00000048967.17_70340438_70354298_1	chr8	-	978	8	Fusion	ENSMUSG00000048967.17_ENSMUSG00000036199.10	novel	785	6	NA	NA	910	0	multi-exon	TRUE	canonical	2	10	junction_1	2773.96888730842	641	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGCCTCTTTTGTGTA	NA	False	NA	0	True	AATAAA	-16	NA	70354298	70340437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr8_-_70340673_70341636_70341788_70341858_70341973_70342092_70342204_70343515_70343625_70347153_70347226_70347891_70347971_70354191
ENSMUSG00000048967.17_70340438_70354298_2	chr8	-	956	8	Fusion	ENSMUSG00000048967.17_ENSMUSG00000036199.10	novel	785	6	NA	NA	910	0	multi-exon	FALSE	canonical	1	2	junction_1	2774.69637243135	633	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGCCTCTTTTGTGTA	NA	False	NA	0	True	AATAAA	-16	NA	70354298	70340437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr8_-_70340673_70341658_70341788_70341858_70341973_70342092_70342204_70343515_70343625_70347153_70347226_70347891_70347971_70354191
ENSMUSG00000048970.10_37719774_37724011_1	chrX	-	1384	2	FSM	ENSMUSG00000048970.10	ENSMUST00000058265.8	1449	2	-47	112	-47	-112	multi-exon	FALSE	canonical	3	94	junction_1	0	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGGTGTATCTTTGCTT	NA	False	NA	-114	True	GATAAA	-23	NA	37724011	37719773	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_37721001_37723854
ENSMUSG00000048970.10_37719840_37723964_1	chrX	-	1271	2	FSM	ENSMUSG00000048970.10	ENSMUST00000058265.8	1449	2	0	178	0	-178	multi-exon	FALSE	canonical	3	94	junction_1	0	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAATTTTTCAAACACATAT	NA	False	NA	NA	False	AATAAA	-14	NA	37723964	37719839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_37721001_37723854
ENSMUSG00000048992.10_24060026_24063123_1	chr17	+	1776	5	NIC	ENSMUSG00000048992.10	novel	229	2	NA	NA	-2803	-10314	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTCGGGTGCCCAGCTTT	NA	False	NA	NA	False	NA	NA	NA	24060025	24063123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_24061500_24062415_24062585_24062812_24062846_24062930_24062958_24063050
ENSMUSG00000049038.4_84955297_84963859_1	chr10	-	1514	3	FSM	ENSMUSG00000049038.4	ENSMUST00000214193.2	337	3	0	-1177	0	0	multi-exon	FALSE	canonical	2	4	junction_2	23	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTATTCCAAAACATCAT	NA	False	NA	2	True	AATAAA	-23	NA	84963859	84955296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_84956679_84962231_84962330_84963825
ENSMUSG00000049047.12_133657344_133660855_1	chrX	+	2008	5	FSM	ENSMUSG00000049047.12	ENSMUST00000081834.10	3327	5	0	1319	0	0	multi-exon	FALSE	canonical	2	7	junction_1	4.81534007106456	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTAGTCTGTCTTTTGG	NA	False	NA	NA	False	AATAAA	-41	NA	133657343	133660855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_133657480_133658012_133658092_133658480_133658543_133658825_133658896_133659194
ENSMUSG00000049073.8_40038220_40151205_1	chr9	-	1408	4	NNC	ENSMUSG00000049073.8	novel	1879	2	NA	NA	-109725	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	3.09120616516523	898	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTATTTAACTATATTAC	NA	False	NA	NA	False	NA	NA	NA	40151205	40038219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_40039350_40063206_40063277_40108832_40108959_40151123
ENSMUSG00000049119.15_5644090_5799962_1	chr4	+	2102	3	FSM	ENSMUSG00000049119.15	ENSMUST00000054857.13	3210	3	-31	1139	0	16	multi-exon	FALSE	canonical	3	35	junction_1	17	342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTCGATTTCTTCGATAT	-17	True	NA	-82	True	NA	NA	NA	5644089	5799962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_5644411_5729570_5729658_5798268
ENSMUSG00000049164.8_40883147_40886842_1	chr19	+	1403	2	ISM	ENSMUSG00000049164.8	ENSMUST00000050092.7	6840	5	-2	19549	-2	-19053	5prime_fragment	FALSE	canonical	3	75	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40883146	40886842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_40883235_40885527
ENSMUSG00000049232.4_59185855_59186486_1	chr6	+	475	2	FSM	ENSMUSG00000049232.4	ENSMUST00000062626.4	3007	2	0	2532	0	-2532	multi-exon	FALSE	canonical	3	130	junction_1	0	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGTGACATCACTTGTCC	NA	False	NA	27	True	AATGAA	-21	NA	59185854	59186486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_59186167_59186323
ENSMUSG00000049232.4_59185855_59186793_1	chr6	+	782	2	FSM	ENSMUSG00000049232.4	ENSMUST00000062626.4	3007	2	0	2225	0	-2225	multi-exon	FALSE	canonical	3	130	junction_1	0	708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAGAAAAAAAGACCCA	NA	False	NA	NA	False	AGTAAA	-33	NA	59185854	59186793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_59186167_59186323
ENSMUSG00000049288.5_96529388_96531358_1	chr3	+	528	2	ISM	ENSMUSG00000049288.5	ENSMUST00000062058.5	3312	6	20923	2129	3771	1814	3prime_fragment	FALSE	canonical	3	7	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGCTCCCTATTTGCT	774	False	NA	NA	False	TATAAA	-6	NA	96529387	96531358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_96529537_96530979
ENSMUSG00000049291.7_59263495_59264602_1	chr11	-	709	3	NNC	ENSMUSG00000049291.7	novel	1243	5	NA	NA	1881	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	3.5	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATGCCTCAGAGCTC	NA	False	NA	NA	False	ATTAAA	-9	NA	59264602	59263494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_59263997_59264251_59264395_59264538
ENSMUSG00000049305.7_108337734_108341752_1	chr9	+	1699	2	FSM	ENSMUSG00000049305.7	ENSMUST00000061209.7	3092	2	8	1385	0	-1253	multi-exon	FALSE	canonical	3	208	junction_1	0	781	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTTGCGGTCTCCTTGCT	195	False	NA	10	True	NA	NA	NA	108337733	108341752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108337817_108340136
ENSMUSG00000049354.9_105927726_105945951_1	chr11	+	1523	7	FSM	ENSMUSG00000049354.9	ENSMUST00000058438.9	5750	7	28	4199	0	-4199	multi-exon	FALSE	canonical	3	184	junction_6	15.5527775297176	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTGTCAGCTGTTGTG	4773	False	NA	6	True	ATTAAA	-13	NA	105927725	105945951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_105928088_105937516_105937676_105938462_105938575_105938968_105939088_105942582_105942793_105944556_105944675_105945508
ENSMUSG00000049382.11_101905133_101912749_1	chr15	-	1790	9	FSM	ENSMUSG00000049382.11	ENSMUST00000023952.10	1958	9	168	0	168	0	multi-exon	FALSE	canonical	3	49	junction_8	4.93552175559991	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATGCATTCGTGTAGGT	6060	False	NA	6	True	AATAAA	-32	NA	101912749	101905132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_101905569_101906094_101906154_101906287_101906509_101906825_101906952_101907208_101907374_101907865_101907962_101909014_101909076_101909851_101910061_101912332
ENSMUSG00000049401.11_180231255_180237629_1	chr2	+	2178	8	NNC	ENSMUSG00000049401.11	novel	2449	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	58	junction_7	13.998542198153	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGGCCGTGTTCTGTTTG	NA	False	NA	22	True	AATAAA	-22	NA	180231254	180237629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_180231415_180232779_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000_180236947_180237000
ENSMUSG00000049401.11_180231255_180237629_2	chr2	+	2227	7	NNC	ENSMUSG00000049401.11	novel	2449	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	28.3470555006257	172	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGGCCGTGTTCTGTTTG	NA	False	NA	22	True	AATAAA	-22	NA	180231254	180237629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_180231415_180232784_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000
ENSMUSG00000049422.8_75768964_75771718_1	chr10	+	839	2	ISM	ENSMUSG00000049422.8	ENSMUST00000219839.2	1488	5	0	1863	0	-1841	5prime_fragment	FALSE	canonical	3	13	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGTTGCCCGGCACTGA	4503	False	NA	NA	False	NA	NA	NA	75768963	75771718	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_75769333_75771248
ENSMUSG00000049422.8_75771734_75773581_1	chr10	+	621	4	NNC	ENSMUSG00000049422.8	novel	1488	5	NA	NA	327	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8132.25016011354	1987	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGCCCATTTA	7273	False	NA	23	True	ATTAAA	-20	NA	75771733	75773581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_75771834_75772079_75772280_75773140_75773289_75773408
ENSMUSG00000049422.8_75771734_75773581_2	chr10	+	626	4	NNC	ENSMUSG00000049422.8	novel	1488	5	NA	NA	327	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8132.25016011354	4026	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGCCCATTTA	7273	False	NA	23	True	ATTAAA	-20	NA	75771733	75773581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_75771839_75772079_75772280_75773140_75773289_75773408
ENSMUSG00000049422.8_75771734_75773581_3	chr10	+	617	4	NNC	ENSMUSG00000049422.8	novel	1488	5	NA	NA	327	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7977.50430202885	1193	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGCCCATTTA	7273	False	NA	23	True	ATTAAA	-20	NA	75771733	75773581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_75771839_75772071_75772280_75773140_75773272_75773408
ENSMUSG00000049422.8_75771734_75773581_4	chr10	+	641	4	NNC	ENSMUSG00000049422.8	novel	1488	5	NA	NA	327	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7977.50430202885	7335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGCCCATTTA	7273	False	NA	23	True	ATTAAA	-20	NA	75771733	75773581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_75771839_75772071_75772280_75773140_75773296_75773408
ENSMUSG00000049422.8_75771734_75773581_5	chr10	+	601	4	NNC	ENSMUSG00000049422.8	novel	1488	5	NA	NA	327	0	at_least_one_novel_splicesite	FALSE	canonical	3	841	junction_2	7249.94865882204	878	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGCCCATTTA	7273	False	NA	23	True	ATTAAA	-20	NA	75771733	75773581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_75771839_75772071_75772280_75773173_75773289_75773408
ENSMUSG00000049422.8_75771734_75773581_6	chr10	+	625	4	NNC	ENSMUSG00000049422.8	novel	1488	5	NA	NA	327	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7646.04634217362	3254	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGCCCATTTA	7273	False	NA	23	True	ATTAAA	-20	NA	75771733	75773581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_75771839_75772071_75772271_75773140_75773289_75773408
ENSMUSG00000049422.8_75771734_75773581_7	chr10	+	627	4	NNC	ENSMUSG00000049422.8	novel	1488	5	NA	NA	327	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7977.50430202885	4783	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGCCCATTTA	7273	False	NA	23	True	ATTAAA	-20	NA	75771733	75773581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_75771839_75772071_75772280_75773140_75773289_75773415
ENSMUSG00000049422.8_75771954_75773581_1	chr10	+	647	3	ISM	ENSMUSG00000049422.8	ENSMUST00000058906.7	939	4	547	-22	547	0	3prime_fragment	FALSE	canonical	3	16591	junction_2	626	2070	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGCCCATTTA	7493	False	NA	23	True	ATTAAA	-20	NA	75771953	75773581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_75772280_75773140_75773289_75773408
ENSMUSG00000049482.17_123202952_123208486_1	chr8	+	1651	15	FSM	ENSMUSG00000049482.17	ENSMUST00000116412.8	3066	15	70	1345	0	3	multi-exon	FALSE	canonical	3	114	junction_5	16.7624458787116	643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTACAGTACTTGTGGGAA	8932	False	NA	17	True	AATAAA	-19	NA	123202951	123208486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207824_123207964_123208069_123208137_123208209_123208269_123208334
ENSMUSG00000049482.17_123202952_123208486_2	chr8	+	1724	14	NIC	ENSMUSG00000049482.17	novel	3066	15	NA	NA	0	3	intron_retention	FALSE	canonical	3	114	junction_5	17.332119514471	546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTACAGTACTTGTGGGAA	8932	False	NA	17	True	AATAAA	-19	NA	123202951	123208486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207824_123207964_123208069_123208269_123208334
ENSMUSG00000049517.9_91071232_91072842_1	chr13	+	530	4	NNC	ENSMUSG00000049517.9	novel	937	4	NA	NA	-104	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9419.93886510004	53621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAAATATTTTGTGTCTT	NA	False	NA	NA	False	AATAAA	-13	NA	91071231	91072842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_91071326_91071737_91071866_91072444_91072566_91072655
ENSMUSG00000049517.9_91071284_91072849_1	chr13	+	485	4	NNC	ENSMUSG00000049517.9	novel	937	4	NA	NA	-52	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9419.93886510004	63891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTCTTACTTCCT	NA	False	NA	NA	False	AATAAA	-20	NA	91071283	91072849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_91071326_91071737_91071866_91072444_91072566_91072655
ENSMUSG00000049517.9_91071284_91072849_10	chr13	+	600	3	ISM	ENSMUSG00000049517.9	ENSMUST00000051955.9	937	4	207	220	-52	6	intron_retention	FALSE	canonical	3	13520	junction_1	3316	136799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTCTTACTTCCT	NA	False	NA	NA	False	AATAAA	-20	NA	91071283	91072849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_91071319_91071705_91071866_91072444
ENSMUSG00000049517.9_91071284_91072849_11	chr13	+	488	4	NNC	ENSMUSG00000049517.9	novel	937	4	NA	NA	-52	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	8385.68176516774	88506	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTCTTACTTCCT	NA	False	NA	NA	False	AATAAA	-20	NA	91071283	91072849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_91071319_91071705_91071866_91072444_91072544_91072655
ENSMUSG00000049517.9_91071284_91072849_2	chr13	+	1089	3	NIC	ENSMUSG00000049517.9	novel	937	4	NA	NA	-52	6	intron_retention	FALSE	canonical	3	13520	junction_1	3144.5	6847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTCTTACTTCCT	NA	False	NA	NA	False	AATAAA	-20	NA	91071283	91072849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_91071319_91071705_91072566_91072655
ENSMUSG00000049517.9_91071284_91072849_3	chr13	+	497	4	NNC	ENSMUSG00000049517.9	novel	937	4	NA	NA	-52	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	8385.68176516774	350863	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTCTTACTTCCT	NA	False	NA	NA	False	AATAAA	-20	NA	91071283	91072849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_91071319_91071705_91071866_91072444_91072553_91072655
ENSMUSG00000049517.9_91071284_91072849_4	chr13	+	496	4	NNC	ENSMUSG00000049517.9	novel	937	4	NA	NA	-52	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	8385.68176516774	113589	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTCTTACTTCCT	NA	False	NA	NA	False	AATAAA	-20	NA	91071283	91072849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_91071319_91071705_91071866_91072444_91072566_91072669
ENSMUSG00000049517.9_91071284_91072849_5	chr13	+	499	4	NNC	ENSMUSG00000049517.9	novel	937	4	NA	NA	-52	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	8385.68176516774	389025	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTCTTACTTCCT	NA	False	NA	NA	False	AATAAA	-20	NA	91071283	91072849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_91071319_91071705_91071866_91072444_91072555_91072655
ENSMUSG00000049517.9_91071284_91072849_6	chr13	+	465	4	NNC	ENSMUSG00000049517.9	novel	937	4	NA	NA	-52	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	8264.63954984662	37939	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTCTTACTTCCT	NA	False	NA	NA	False	AATAAA	-20	NA	91071283	91072849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_91071319_91071705_91071821_91072444_91072566_91072655
ENSMUSG00000049517.9_91071284_91072849_7	chr13	+	474	4	NNC	ENSMUSG00000049517.9	novel	937	4	NA	NA	-52	6	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	8262.84724938484	46008	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTCTTACTTCCT	NA	False	NA	NA	False	AATAAA	-20	NA	91071283	91072849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_91071319_91071705_91071866_91072480_91072566_91072655
ENSMUSG00000049517.9_91071284_91072849_8	chr13	+	477	4	NNC	ENSMUSG00000049517.9	novel	937	4	NA	NA	-52	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	8385.68176516774	3132	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTCTTACTTCCT	NA	False	NA	NA	False	AATAAA	-20	NA	91071283	91072849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_91071319_91071705_91071866_91072444_91072533_91072655
ENSMUSG00000049517.9_91071284_91072849_9	chr13	+	497	4	NNC	ENSMUSG00000049517.9	novel	937	4	NA	NA	-52	6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	8385.23560922543	304658	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTCTTACTTCCT	NA	False	NA	NA	False	AATAAA	-20	NA	91071283	91072849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_91071319_91071705_91071866_91072444_91072566_91072668
ENSMUSG00000049526.9_59446975_59472392_1	chr9	-	1844	14	NIC	ENSMUSG00000049526.9	novel	1126	4	NA	NA	-25262	-14974	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3249	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCACGTGAGCCCCGGT	NA	False	NA	NA	False	NA	NA	NA	59472392	59446974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59469578_59469652_59470149_59470334_59470506_59470598_59471165_59471271_59472103
ENSMUSG00000049526.9_59446975_59472392_2	chr9	-	1771	13	NIC	ENSMUSG00000049526.9	novel	1126	4	NA	NA	-25262	-14974	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	823	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCACGTGAGCCCCGGT	NA	False	NA	NA	False	NA	NA	NA	59472392	59446974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59470149_59470334_59470506_59470598_59471165_59471271_59472103
ENSMUSG00000049536.6_135608731_135610622_1	chrX	+	1198	2	FSM	ENSMUSG00000049536.6	ENSMUST00000055104.6	2803	2	0	1605	0	-1605	multi-exon	FALSE	canonical	3	18	junction_1	0	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAATGTTTCTTCTGAATC	NA	False	NA	NA	False	AATAAA	-25	NA	135608730	135610622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_135608838_135609531
ENSMUSG00000049604.4_96085142_96087420_1	chr11	+	1353	2	FSM	ENSMUSG00000049604.4	ENSMUST00000062709.4	2206	2	0	853	0	-853	multi-exon	FALSE	canonical	2	9	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACAGTTTCCTCTCAGATT	3944	False	NA	NA	False	AATAAA	-20	NA	96085141	96087420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_96085873_96086798
ENSMUSG00000049624.15_78445040_78495309_1	chr9	-	1952	11	FSM	ENSMUSG00000049624.15	ENSMUST00000052441.12	3236	11	14	1270	0	-1252	multi-exon	FALSE	canonical	3	37	junction_3	5.61782876207526	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTTTTTAATTATTACTA	NA	False	NA	NA	False	NA	NA	NA	78495309	78445039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_78445582_78448180_78448272_78460215_78460364_78464738_78464872_78466292_78466452_78467969_78468089_78478303_78478391_78481931_78482020_78484311_78484546_78485792_78485990_78495155
ENSMUSG00000049643.16_27273892_27281524_1	chr7	+	2019	4	FSM	ENSMUSG00000049643.16	ENSMUST00000186501.2	340	4	0	-1679	0	0	multi-exon	FALSE	canonical	3	27	junction_1	145.525102836437	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTCTGTGTATGT	7134	False	NA	NA	False	AATAAA	-20	NA	27273891	27281524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27273927_27274015_27274166_27278137_27278209_27279761
ENSMUSG00000049670.10_42063378_42074800_1	chr19	-	1804	5	NNC	ENSMUSG00000049670.10	novel	1800	5	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	43.8541617181312	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTTATGAACTTTCTG	4136	False	NA	0	True	AATAAA	-24	NA	42074800	42063377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_42064695_42064893_42064997_42066399_42066519_42066922_42067023_42074635
ENSMUSG00000049672.16_69690045_69694453_1	chr17	+	451	3	FSM	ENSMUSG00000049672.16	ENSMUST00000112674.8	3743	3	0	3292	0	-3292	multi-exon	FALSE	canonical	3	85	junction_1	58	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTGTCCTCGCCGCCTG	NA	False	NA	NA	False	NA	NA	NA	69690044	69694453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_69690265_69692415_69692500_69694306
ENSMUSG00000049672.16_69690045_69694770_1	chr17	+	768	3	FSM	ENSMUSG00000049672.16	ENSMUST00000112674.8	3743	3	0	2975	0	-2975	multi-exon	FALSE	canonical	3	85	junction_1	58	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGCTCAGGACGATGATG	NA	False	NA	NA	False	ACTAAA	-22	NA	69690044	69694770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_69690265_69692415_69692500_69694306
ENSMUSG00000049760.7_56914620_56916702_1	chr17	-	518	4	FSM	ENSMUSG00000049760.7	ENSMUST00000052832.6	755	4	69	168	-20	0	multi-exon	FALSE	canonical	3	1891	junction_3	98.6610358753647	14052	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCCGGTTTTCTGGTGGG	NA	False	NA	-25	True	AATAAA	-18	NA	56916702	56914619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_56914842_56915637_56915693_56915845_56916024_56916639
ENSMUSG00000049760.7_56914620_56916702_2	chr17	-	501	4	NNC	ENSMUSG00000049760.7	novel	755	4	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	297	junction_2	811.365241771889	9895	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCCGGTTTTCTGGTGGG	NA	False	NA	-25	True	AATAAA	-18	NA	56916702	56914619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_56914842_56915637_56915693_56915862_56916024_56916639
ENSMUSG00000049760.7_56914620_56916829_1	chr17	-	645	4	FSM	ENSMUSG00000049760.7	ENSMUST00000052832.6	755	4	-58	168	-58	0	multi-exon	FALSE	canonical	3	1891	junction_3	98.6610358753647	16345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCCGGTTTTCTGGTGGG	NA	False	NA	-25	True	AATAAA	-18	NA	56916829	56914619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_56914842_56915637_56915693_56915845_56916024_56916639
ENSMUSG00000049775.17_165990089_165992157_1	chrX	-	614	3	FSM	ENSMUSG00000049775.17	ENSMUST00000112172.4	768	3	154	0	-12	0	multi-exon	FALSE	canonical	3	1191	junction_1	25.5	9706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTGTCTGCTTGGTGA	NA	False	NA	0	True	AATAAA	-15	NA	165992157	165990088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_165990532_165990932_165991048_165992101
ENSMUSG00000049799.14_94502728_94526893_1	chr4	-	1004	9	NNC	ENSMUSG00000049799.14	novel	2820	6	NA	NA	11460	22162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	368	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACGGTCACCGCGCGGAA	6414	False	NA	NA	False	NA	NA	NA	94526893	94502727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_94502889_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94526652
ENSMUSG00000049800.14_20493253_20599123_1	chr11	+	1830	2	FSM	ENSMUSG00000049800.14	ENSMUST00000093292.11	5647	2	-81	3898	0	58	multi-exon	FALSE	canonical	0	0	junction_1	0	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATATATCTATATTATT	NA	False	NA	22	True	NA	NA	NA	20493252	20599123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_20493761_20597801
ENSMUSG00000049800.14_20581979_20599123_1	chr11	+	1617	2	FSM	ENSMUSG00000049800.14	ENSMUST00000109586.3	5515	2	0	3898	0	58	multi-exon	FALSE	canonical	3	14	junction_1	0	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATATATCTATATTATT	NA	False	NA	22	True	NA	NA	NA	20581978	20599123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_20582274_20597801
ENSMUSG00000049811.18_22970470_22973726_1	chr11	+	961	2	ISM	ENSMUSG00000049811.18	ENSMUST00000058269.10	1927	4	7083	5	0	2	3prime_fragment	FALSE	canonical	2	9	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCATGTACCTCAAGACAT	NA	False	NA	4	True	AATAAA	-15	NA	22970469	22973726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_22971134_22973429
ENSMUSG00000049823.10_35112326_35117241_1	chr17	+	538	4	Genic_Genomic	ENSMUSG00000049823.10	novel	387	3	NA	NA	-1209	1398	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGGGAAGCCACAGCCCA	1551	False	NA	NA	False	NA	NA	NA	35112325	35117241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_+_35112451_35112586_35112677_35114382_35114544_35117079
ENSMUSG00000049823.10_35112326_35117428_1	chr17	+	531	4	Genic_Genomic	ENSMUSG00000049823.10	novel	387	3	NA	NA	-1209	1585	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCGGGGCGGCCGCGCGC	1551	False	NA	NA	False	NA	NA	NA	35112325	35117428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_+_35112451_35112586_35112677_35114382_35114544_35117273
ENSMUSG00000049823.10_35112326_35117428_2	chr17	+	725	4	Genic_Genomic	ENSMUSG00000049823.10	novel	387	3	NA	NA	-1209	1585	multi-exon	FALSE	non_canonical	0	0	junction_1	0	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCGGGGCGGCCGCGCGC	1551	False	NA	NA	False	NA	NA	NA	35112325	35117428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_+_35112451_35112586_35112677_35114382_35114544_35117079
ENSMUSG00000049872.9_33967412_33972515_1	chr10	-	1722	2	FSM	ENSMUSG00000049872.9	ENSMUST00000069125.8	5323	2	0	3601	0	-3601	multi-exon	FALSE	canonical	3	31	junction_1	0	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATTTTTTCTGGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	33972515	33967411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_33968512_33971893
ENSMUSG00000049881.14_157240332_157247805_1	chr1	+	783	3	FSM	ENSMUSG00000049881.14	ENSMUST00000061537.12	1194	3	410	1	122	-1	multi-exon	FALSE	canonical	3	989	junction_1	26.5	12851	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCTGGCCCAGTGTCTT	NA	False	NA	34	True	AATAAA	-16	NA	157240331	157247805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_157240696_157241313_157241366_157247438
ENSMUSG00000049882.11_69624402_69629791_1	chr12	-	1088	6	NIC	ENSMUSG00000049882.11	novel	1109	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	61.6071424430642	926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAAGCAGCATGGTTGG	NA	False	NA	-5	True	AATAAA	-24	NA	69629791	69624401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_69624715_69626607_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629494
ENSMUSG00000049882.11_69624402_69629791_2	chr12	-	1005	6	FSM	ENSMUSG00000049882.11	ENSMUST00000238784.2	875	6	93	-223	0	0	multi-exon	FALSE	canonical	3	55	junction_4	48.4710222710435	910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAAGCAGCATGGTTGG	NA	False	NA	-5	True	AATAAA	-24	NA	69629791	69624401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629304_69629405_69629494
ENSMUSG00000049882.11_69624402_69629791_3	chr12	-	845	6	NNC	ENSMUSG00000049882.11	novel	1109	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	66.6375269649167	124	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAAGCAGCATGGTTGG	NA	False	NA	-5	True	AATAAA	-24	NA	69629791	69624401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629665
ENSMUSG00000049904.8_22462278_22469234_1	chr11	+	1378	4	FSM	ENSMUSG00000049904.8	ENSMUST00000059319.8	1568	4	190	0	190	0	multi-exon	FALSE	canonical	3	52	junction_3	9.0921211313239	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTTATCTGTGTAGTTC	NA	False	NA	7	True	ATTAAA	-16	NA	22462277	22469234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_22462584_22467187_22467292_22467407_22467522_22468380
ENSMUSG00000049904.8_22462278_22469234_2	chr11	+	1170	4	NNC	ENSMUSG00000049904.8	novel	1568	4	NA	NA	190	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	27.8846831711525	96	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTTATCTGTGTAGTTC	NA	False	NA	7	True	ATTAAA	-16	NA	22462277	22469234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_22462376_22467187_22467292_22467407_22467522_22468380
ENSMUSG00000049904.8_22462445_22469234_1	chr11	+	1211	4	FSM	ENSMUSG00000049904.8	ENSMUST00000059319.8	1568	4	357	0	357	0	multi-exon	FALSE	canonical	3	52	junction_3	9.0921211313239	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTTATCTGTGTAGTTC	NA	False	NA	7	True	ATTAAA	-16	NA	22462444	22469234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_22462584_22467187_22467292_22467407_22467522_22468380
ENSMUSG00000049907.9_74356106_74360142_1	chr5	+	1653	4	FSM	ENSMUSG00000049907.9	ENSMUST00000051937.9	1812	4	159	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.4142135623731	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGACTGGGTCTTTATT	NA	False	NA	21	True	AATAAA	-23	NA	74356105	74360142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_74356252_74356763_74356821_74357927_74358005_74358769
ENSMUSG00000049916.13_16931263_16939624_1	chr16	-	1102	7	NIC	ENSMUSG00000049916.13	novel	1156	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_6	108.073149096136	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGTTGTATGTCCTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	16939624	16931262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16939527
ENSMUSG00000049916.13_16931263_16943004_1	chr16	-	1347	6	NNC	ENSMUSG00000049916.13	novel	1156	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	46	junction_5	102.268274650548	1016	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGTTGTATGTCCTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	16943004	16931262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16939416_16942878
ENSMUSG00000049916.13_16931263_16943004_2	chr16	-	1131	7	NNC	ENSMUSG00000049916.13	novel	1156	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_6	94.3705756873166	1432	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGTTGTATGTCCTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	16943004	16931262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16942878
ENSMUSG00000049940.8_41021929_41037224_1	chr3	-	1582	3	FSM	ENSMUSG00000049940.8	ENSMUST00000058578.8	3007	3	257	1168	257	1026	multi-exon	FALSE	canonical	3	569	junction_2	17	385	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTCGAGTCGGACTCTA	NA	False	NA	NA	False	AATAAA	-20	NA	41037224	41021928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_41023160_41024714_41024871_41037029
ENSMUSG00000049957.15_120348964_120354206_1	chr11	+	1777	6	FSM	ENSMUSG00000049957.15	ENSMUST00000058370.14	2778	6	23	978	0	848	multi-exon	FALSE	canonical	3	99	junction_3	16.7164589551735	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGGCCGTTGCTCTCCA	231	False	NA	NA	False	ATTAAA	-16	NA	120348963	120354206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120349105_120349437_120349572_120350867_120351091_120352541_120352625_120352831_120352912_120353090
ENSMUSG00000049957.15_120348964_120354580_1	chr11	+	2151	6	FSM	ENSMUSG00000049957.15	ENSMUST00000058370.14	2778	6	23	604	0	-603	multi-exon	FALSE	canonical	3	99	junction_3	16.7164589551735	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGGGATTGTTTTCTGAG	231	False	NA	5	True	ATTAAA	-19	NA	120348963	120354580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120349105_120349437_120349572_120350867_120351091_120352541_120352625_120352831_120352912_120353090
ENSMUSG00000049960.5_20441295_20443593_1	chr14	-	540	3	FSM	ENSMUSG00000049960.5	ENSMUST00000061444.5	2572	3	109	1923	-42	0	multi-exon	FALSE	canonical	3	1591	junction_2	40	13517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACGGTCCTCTGGCATAG	8636	False	NA	-36	True	AATAAA	-14	NA	20443593	20441294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_20441529_20441960_20442222_20443548
ENSMUSG00000049971.18_127709326_127744802_1	chr5	+	736	7	NNC	ENSMUSG00000049971.18	novel	1713	11	NA	NA	0	-22133	at_least_one_novel_splicesite	TRUE	canonical	3	16	junction_6	12.7986544431653	305	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGTCTTGGTCATGGTG	8701	False	NA	NA	False	NA	NA	NA	127709325	127744802	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_127709416_127721382_127721532_127727746_127727853_127734150_127734203_127740405_127740443_127741715_127741773_127744557
ENSMUSG00000049971.18_127709326_127784516_1	chr5	+	1491	12	FSM	ENSMUSG00000049971.18	ENSMUST00000118139.3	3413	12	0	1922	0	-1922	multi-exon	TRUE	canonical	3	18	junction_6	12.1383212585269	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTGGAGCTGGCAGCAT	8701	False	NA	NA	False	AAAAAG	-15	NA	127709325	127784516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_127709416_127721382_127721532_127727746_127727853_127734150_127734203_127740405_127740443_127741715_127741773_127754268_127754365_127755154_127755205_127766900_127766945_127768053_127768175_127771290_127771390_127783926
ENSMUSG00000049971.18_127709326_127784778_1	chr5	+	1753	12	FSM	ENSMUSG00000049971.18	ENSMUST00000118139.3	3413	12	0	1660	0	-1660	multi-exon	FALSE	canonical	3	18	junction_6	12.1383212585269	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGTGGTCATTCCTCTT	8701	False	NA	NA	False	NA	NA	NA	127709325	127784778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_127709416_127721382_127721532_127727746_127727853_127734150_127734203_127740405_127740443_127741715_127741773_127754268_127754365_127755154_127755205_127766900_127766945_127768053_127768175_127771290_127771390_127783926
ENSMUSG00000050002.15_58305497_58311763_1	chr13	+	670	4	NNC	ENSMUSG00000050002.15	novel	689	5	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	84.6968450153579	990	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGGGCTGTACTGTAAATTC	NA	False	NA	5	True	NA	NA	NA	58305496	58311763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_58305551_58307690_58307722_58307965_58308053_58311265
ENSMUSG00000050002.15_58305497_58311763_2	chr13	+	689	4	FSM	ENSMUSG00000050002.15	ENSMUST00000109868.4	1462	4	29	744	0	3	multi-exon	FALSE	canonical	3	143	junction_3	23.6220236220354	1249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGGGCTGTACTGTAAATTC	NA	False	NA	5	True	NA	NA	NA	58305496	58311763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_58305551_58307690_58307722_58307965_58308053_58311246
ENSMUSG00000050017.12_111478629_111535300_1	chr5	+	1836	11	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	0	-925	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	374.982999614649	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGACTCTGGCTAAGCAA	NA	False	NA	7	True	AATAAA	-13	NA	111478628	111535300	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
ENSMUSG00000050017.12_111478629_111535300_3	chr5	+	1831	11	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	0	-925	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	374.982999614649	161	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGACTCTGGCTAAGCAA	NA	False	NA	7	True	AATAAA	-13	NA	111478628	111535300	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_111478700_111483360_111483392_111486148_111486295_111494353_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
ENSMUSG00000050017.12_111478629_111536225_2	chr5	+	2756	11	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	374.982999614649	648	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	16	True	AATAAA	-17	NA	111478628	111536225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_111478700_111483360_111483392_111486148_111486295_111494353_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
ENSMUSG00000050022.17_140735038_140739065_1	chr5	+	1422	2	ISM	ENSMUSG00000050022.17	ENSMUST00000176035.2	2402	4	0	8129	0	0	5prime_fragment	FALSE	canonical	3	12	junction_1	0	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTGTGTCATGTATTGT	NA	False	NA	23	True	NA	NA	NA	140735037	140739065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_140735087_140737692
ENSMUSG00000050029.8_50093170_50106902_1	chrX	-	3171	3	FSM	ENSMUSG00000050029.8	ENSMUST00000053593.8	3545	3	-7	381	-7	-381	multi-exon	FALSE	canonical	3	105	junction_1	4	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGGAGGCTTGTCTCTTT	NA	False	NA	-8	True	AATAAA	-14	NA	50106902	50093169	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_50095628_50103847_50104161_50106502
ENSMUSG00000050029.8_50093973_50106902_1	chrX	-	2368	3	FSM	ENSMUSG00000050029.8	ENSMUST00000053593.8	3545	3	-7	1184	-7	-1184	multi-exon	FALSE	canonical	3	105	junction_1	4	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTGTTGCATTTGATTCCT	NA	False	NA	-1	True	ATTAAA	-22	NA	50106902	50093972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_50095628_50103847_50104161_50106502
ENSMUSG00000050043.17_84501838_84508410_1	chr2	-	1810	8	FSM	ENSMUSG00000050043.17	ENSMUST00000053664.9	1977	8	-10	177	-10	-177	multi-exon	FALSE	canonical	3	1517	junction_2	94.3986336808766	2246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCATCATTGGAAATAGA	5281	False	NA	NA	False	ATTAAA	-16	NA	84508410	84501837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506088_84506203_84506440_84506502_84508194
ENSMUSG00000050043.17_84502607_84508410_1	chr2	-	1041	8	FSM	ENSMUSG00000050043.17	ENSMUST00000053664.9	1977	8	-10	946	-10	0	multi-exon	FALSE	canonical	3	1517	junction_2	94.3986336808766	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGCCTGCTTCTGATTTT	5281	False	NA	NA	False	NA	NA	NA	84508410	84502606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506088_84506203_84506440_84506502_84508194
ENSMUSG00000050043.17_84508746_84516977_1	chr2	-	973	5	NNC	ENSMUSG00000050043.17	novel	2282	9	NA	NA	-7493	-2296	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	403	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATTGGACAGTACTTTC	NA	False	NA	NA	False	NA	NA	NA	84516977	84508745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_84509006_84515534_84515792_84515946_84516044_84516534_84516630_84516713
ENSMUSG00000050052.13_14002008_14025032_1	chr8	-	2503	4	NNC	ENSMUSG00000050052.13	novel	373	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	23	junction_3	123.22427610752	957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTAGTGTGTATATTTA	4525	False	NA	-4	True	ATTAAA	-18	NA	14025032	14002007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_14004136_14005719_14005818_14024540_14024730_14024944
ENSMUSG00000050052.13_14002486_14024743_1	chr8	-	1951	3	FSM	ENSMUSG00000050052.13	ENSMUST00000062613.12	2463	3	34	478	0	-356	multi-exon	FALSE	canonical	3	271	junction_2	12.5	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTGAAATTATGGAGATT	4814	False	NA	-6	True	AATAAA	-20	NA	14024743	14002485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_14004136_14005719_14005818_14024540
ENSMUSG00000050052.13_14003130_14024743_1	chr8	-	1307	3	FSM	ENSMUSG00000050052.13	ENSMUST00000062613.12	2463	3	34	1122	0	626	multi-exon	FALSE	canonical	3	271	junction_2	12.5	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATGGAAGAAACACTAGGAA	4814	False	NA	NA	False	AATAAA	-20	NA	14024743	14003129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_14004136_14005719_14005818_14024540
ENSMUSG00000050079.11_95328594_95385486_1	chr8	+	2406	15	FSM	ENSMUSG00000050079.11	ENSMUST00000060389.10	3852	15	29	1417	0	-895	multi-exon	FALSE	canonical	3	105	junction_1	22.9280151245375	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAACCACAAACA	8140	False	NA	NA	False	NA	NA	NA	95328593	95385486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_95329059_95349461_95349964_95355683_95355737_95356377_95356491_95358683_95358811_95359733_95359793_95362052_95362120_95363251_95363384_95364890_95365007_95366150_95366295_95373211_95373324_95376380_95376484_95376822_95376976_95380854_95380960_95385331
ENSMUSG00000050079.11_95328594_95385510_1	chr8	+	2104	15	FSM	ENSMUSG00000050079.11	ENSMUST00000211983.2	3397	15	-100	1393	0	-871	multi-exon	FALSE	canonical	3	30	junction_1	38.5556184529014	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACCAGTTGTACGCACATT	8140	False	NA	NA	False	AAAAAG	-24	NA	95328593	95385510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_95328733_95349461_95349964_95355683_95355737_95356377_95356491_95358683_95358811_95359733_95359793_95362052_95362120_95363251_95363384_95364890_95365007_95366150_95366295_95373211_95373324_95376380_95376484_95376822_95376976_95380854_95380960_95385331
ENSMUSG00000050088.10_15163492_15165248_1	chr17	+	1575	2	FSM	ENSMUSG00000050088.10	ENSMUST00000164837.3	2523	2	0	948	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGATGTTTAAGGTCATCG	NA	False	NA	8	True	AATAAA	-13	NA	15163491	15165248	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_15163582_15163763
ENSMUSG00000050088.10_15163492_15165248_2	chr17	+	1510	2	FSM	ENSMUSG00000050088.10	ENSMUST00000052691.9	2506	2	46	950	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGATGTTTAAGGTCATCG	NA	False	NA	8	True	AATAAA	-13	NA	15163491	15165248	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_15163582_15163828
ENSMUSG00000050088.10_15165271_15175191_1	chr17	+	1032	7	NIC	ENSMUSG00000050088.10	novel	2506	2	NA	NA	1738	-4641	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	1084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGCATTTGCTGAAAGG	NA	False	NA	NA	False	NA	NA	NA	15165270	15175191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_15165447_15166460_15166650_15166916_15167026_15170821_15170978_15172881_15173036_15174276_15174387_15175053
ENSMUSG00000050122.20_37082025_37086714_1	chr1	+	672	3	NNC	ENSMUSG00000050122.20	novel	1636	8	NA	NA	7236	-16016	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7	86	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTACACAACTGTTATCAT	NA	False	NA	NA	False	NA	NA	NA	37082024	37086714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_37082066_37083844_37084290_37086528
ENSMUSG00000050122.20_37082025_37102730_1	chr1	+	1035	5	NNC	ENSMUSG00000050122.20	novel	1636	8	NA	NA	7236	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11.0989864402116	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTCTGCATTATTTCCT	NA	False	NA	NA	False	AATAAA	-22	NA	37082024	37102730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_37082066_37083844_37084290_37090797_37090961_37099410_37099581_37102514
ENSMUSG00000050122.20_37139749_37180417_1	chr1	+	1396	9	ISM	ENSMUSG00000050122.20	ENSMUST00000238425.2	4095	29	71335	46269	0	0	internal_fragment	TRUE	canonical	3	35	junction_7	9.96164519544839	896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCAGATTTCTCCCTCA	NA	False	NA	5	True	AATAAA	-22	NA	37139748	37180417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_37139908_37148076_37148232_37153541_37153681_37154738_37154871_37163031_37163131_37167964_37168142_37174515_37174647_37176810_37176969_37180171
ENSMUSG00000050122.20_37139749_37180417_2	chr1	+	1241	8	NIC	ENSMUSG00000050122.20	novel	4717	27	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	16.9440857179231	793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCAGATTTCTCCCTCA	NA	False	NA	5	True	AATAAA	-22	NA	37139748	37180417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_37139908_37153541_37153681_37154738_37154871_37163031_37163131_37167964_37168142_37174515_37174647_37176810_37176969_37180171
ENSMUSG00000050122.20_37174589_37180417_1	chr1	+	424	3	NNC	ENSMUSG00000050122.20	novel	462	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	33	115	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCAGATTTCTCCCTCA	NA	False	NA	5	True	AATAAA	-22	NA	37174588	37180417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_37174647_37176848_37176969_37180171
ENSMUSG00000050122.20_37176811_37180417_1	chr1	+	404	2	ISM	ENSMUSG00000050122.20	ENSMUST00000195450.2	462	3	2222	0	2222	0	3prime_fragment	FALSE	canonical	3	67	junction_1	0	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCAGATTTCTCCCTCA	NA	False	NA	5	True	AATAAA	-22	NA	37176810	37180417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_37176969_37180171
ENSMUSG00000050144.14_88318962_88332446_1	chr3	-	2421	4	FSM	ENSMUSG00000050144.14	ENSMUST00000057935.9	3577	4	0	1156	0	-1156	multi-exon	FALSE	canonical	3	53	junction_3	3.85861230093008	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGTCAGGAAGGCACCCA	4066	False	NA	NA	False	NA	NA	NA	88332446	88318961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332034
ENSMUSG00000050150.17_135053807_135060344_1	chr3	+	685	3	NNC	ENSMUSG00000050150.17	novel	1196	4	NA	NA	0	-3484	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	21	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGGTTCATGGCTTTGAT	NA	False	NA	NA	False	AATAAA	-24	NA	135053806	135060344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_135053884_135054090_135054535_135060180
ENSMUSG00000050150.17_135053807_135063828_2	chr3	+	749	3	ISM	ENSMUSG00000050150.17	ENSMUST00000159658.8	588	4	17	13912	0	0	5prime_fragment	FALSE	canonical	3	17	junction_1	66	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTGGTCTTCAAATTTAA	NA	False	NA	14	True	AATAAA	-25	NA	135053806	135063828	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_135053884_135060771_135060833_135063217
ENSMUSG00000050150.17_135053807_135064075_1	chr3	+	996	3	ISM	ENSMUSG00000050150.17	ENSMUST00000159658.8	588	4	17	13665	0	8	5prime_fragment	FALSE	canonical	3	17	junction_1	66	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTATTCATTGTTTTTTCT	NA	False	NA	NA	False	AAGAAA	-2	NA	135053806	135064075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_135053884_135060771_135060833_135063217
ENSMUSG00000050150.17_135053807_135080237_1	chr3	+	1267	7	NNC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	0	51	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	42.7099389942071	57	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGTATAGCCAGGTTCT	NA	False	NA	5	True	ATTAAA	-17	NA	135053806	135080237	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063383_135077605_135077777_135078879_135079023_135080034
ENSMUSG00000050150.17_135053807_135080462_2	chr3	+	1492	7	NNC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	42.7099389942071	94	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTCAAAAATCAATTGATC	NA	False	NA	NA	False	AAAAAG	-3	NA	135053806	135080462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063383_135077605_135077777_135078879_135079023_135080034
ENSMUSG00000050150.17_135053807_135099879_1	chr3	+	1409	10	NIC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	0	1035	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	36.7910348714681	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGCTTTATTTTTGTTT	NA	False	NA	6	True	AATACA	-16	NA	135053806	135099879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_135053884_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135099720
ENSMUSG00000050150.17_135053807_135099879_2	chr3	+	1348	9	NIC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	0	1035	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	19.8616307235836	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGCTTTATTTTTGTTT	NA	False	NA	6	True	AATACA	-16	NA	135053806	135099879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_135053884_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135099720
ENSMUSG00000050150.17_135053807_135099879_3	chr3	+	1856	11	NIC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	0	1035	combination_of_known_junctions	FALSE	canonical	3	24	junction_9	33.6964389809962	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGCTTTATTTTTGTTT	NA	False	NA	6	True	AATACA	-16	NA	135053806	135099879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135099720
ENSMUSG00000050150.17_135096230_135099879_1	chr3	+	308	3	ISM	ENSMUSG00000050150.17	ENSMUST00000161417.6	783	6	7719	3706	-3535	1035	internal_fragment	FALSE	canonical	3	24	junction_1	15	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGCTTTATTTTTGTTT	NA	False	NA	6	True	AATACA	-16	NA	135096229	135099879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_135096290_135097921_135098011_135099720
ENSMUSG00000050157.7_75773557_75776445_1	chr10	-	1167	7	FSM	ENSMUSG00000050157.7	ENSMUST00000219979.2	714	7	0	-453	0	0	multi-exon	FALSE	canonical	3	20	junction_5	8.23441288469042	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAATTATGTCTCCTGT	4977	False	NA	NA	False	AGTAAA	-42	NA	75776445	75773556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_75774191_75774995_75775166_75775239_75775315_75775546_75775673_75775764_75775852_75776227_75776255_75776397
ENSMUSG00000050157.7_75774566_75776553_1	chr10	-	1377	4	NIC	ENSMUSG00000050157.7	novel	1221	7	NA	NA	-47	-556	intron_retention	FALSE	canonical	3	20	junction_2	7.58653778449403	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	4869	False	NA	NA	False	NA	NA	NA	75776553	75774565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_75775673_75775764_75775852_75776227_75776255_75776397
ENSMUSG00000050188.9_125990453_125993016_1	chr4	+	1545	2	FSM	ENSMUSG00000050188.9	ENSMUST00000055575.8	943	2	37	-639	0	639	multi-exon	FALSE	canonical	3	289	junction_1	0	1812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGCACCTCACTGTGC	NA	False	NA	NA	False	AATAAA	-24	NA	125990452	125993016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_125990603_125991621
ENSMUSG00000050212.5_126042325_126043658_1	chr4	+	892	3	FSM	ENSMUSG00000050212.5	ENSMUST00000052876.3	1689	3	788	9	0	0	multi-exon	FALSE	canonical	3	53	junction_1	143	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGCGACTCAGTCTCT	7130	False	NA	11	True	AATGAA	-6	NA	126042324	126043658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_126042425_126042676_126042839_126043028
ENSMUSG00000050212.5_126042325_126043658_2	chr4	+	739	3	NNC	ENSMUSG00000050212.5	novel	1144	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	168	70	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGCGACTCAGTCTCT	7130	False	NA	11	True	AATGAA	-6	NA	126042324	126043658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_126042339_126042743_126042839_126043028
ENSMUSG00000050212.5_126042325_126043658_3	chr4	+	825	3	FSM	ENSMUSG00000050212.5	ENSMUST00000106152.3	1364	3	529	10	0	0	multi-exon	FALSE	canonical	3	244	junction_1	47.5	871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGCGACTCAGTCTCT	7130	False	NA	11	True	AATGAA	-6	NA	126042324	126043658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_126042425_126042743_126042839_126043028
ENSMUSG00000050212.5_126042325_126043658_4	chr4	+	812	3	NNC	ENSMUSG00000050212.5	novel	1364	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	122	598	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGCGACTCAGTCTCT	7130	False	NA	11	True	AATGAA	-6	NA	126042324	126043658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_126042425_126042743_126042839_126043041
ENSMUSG00000050217.14_31242237_31261742_1	chr1	+	641	3	NIC	ENSMUSG00000050217.14	novel	1586	3	NA	NA	13686	17936	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAACGGGACGAGCTGGGA	NA	False	NA	NA	False	NA	NA	NA	31242236	31261742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_31242470_31243332_31243555_31261556
ENSMUSG00000050270.13_66915980_66926144_1	chr11	+	1575	7	NNC	ENSMUSG00000050270.13	novel	1597	6	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	9.01849950564579	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTGGGGAGAATTACTAG	3918	False	NA	NA	False	NA	NA	NA	66915979	66926144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_66916098_66916734_66916765_66920791_66920853_66921887_66922012_66923006_66923067_66924934_66925890_66925917
ENSMUSG00000050310.10_6737862_6786306_1	chr15	+	843	7	FSM	ENSMUSG00000050310.10	ENSMUST00000226201.2	2633	7	0	1790	0	-1790	multi-exon	FALSE	canonical	3	76	junction_1	4.31083905212585	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGCCTTCCTTGATTGAT	NA	False	NA	NA	False	ACTAAA	-2	NA	6737861	6786306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941
ENSMUSG00000050310.10_6737862_6789076_1	chr15	+	713	8	FSM	ENSMUSG00000050310.10	ENSMUST00000226181.2	4695	8	0	3982	0	980	multi-exon	FALSE	canonical	3	60	junction_7	8.20900451346208	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCACCTTCTTAATCAT	NA	False	NA	NA	False	AATAAA	-21	NA	6737861	6789076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941_6786069_6788968
ENSMUSG00000050332.8_94470971_94488478_1	chrX	-	1449	2	FSM	ENSMUSG00000050332.8	ENSMUST00000084535.6	8496	2	0	7047	0	-7047	multi-exon	FALSE	canonical	3	18	junction_1	0	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	94488478	94470970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_94472205_94488263
ENSMUSG00000050335.18_47605208_47623254_1	chr14	+	1141	7	NIC	ENSMUSG00000050335.18	novel	646	5	NA	NA	0	3	combination_of_known_junctions	TRUE	canonical	2	5	junction_1	41.1055551801294	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCATCGCTTTGGGGGTT	NA	False	NA	4	True	AATAAA	-17	NA	47605207	47623254	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_47605310_47605702_47605826_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
ENSMUSG00000050335.18_47611270_47623254_1	chr14	+	1083	6	FSM	ENSMUSG00000050335.18	ENSMUST00000150290.9	1298	6	-76	291	0	3	multi-exon	FALSE	canonical	3	42	junction_1	20.2286924935845	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCATCGCTTTGGGGGTT	NA	False	NA	4	True	AATAAA	-17	NA	47611269	47623254	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_47611437_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
ENSMUSG00000050335.18_47611373_47623254_1	chr14	+	980	6	FSM	ENSMUSG00000050335.18	ENSMUST00000150290.9	1298	6	27	291	0	3	multi-exon	FALSE	canonical	3	42	junction_1	20.2286924935845	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCATCGCTTTGGGGGTT	NA	False	NA	4	True	AATAAA	-17	NA	47611372	47623254	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_47611437_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
ENSMUSG00000050357.10_106424790_106427717_1	chr8	+	1528	11	NIC	ENSMUSG00000050357.10	novel	2526	17	NA	NA	3094	2898	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	525	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGGGAGAGGAAGCACGTG	9383	False	NA	NA	False	NA	NA	NA	106424789	106427717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426363_106426492_106426528_106426635_106426793_106426913_106426991_106427078_106427173_106427334_106427472_106427551
ENSMUSG00000050357.10_106424790_106427717_2	chr8	+	1264	10	NIC	ENSMUSG00000050357.10	novel	2526	17	NA	NA	3094	2898	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGGGAGAGGAAGCACGTG	9383	False	NA	NA	False	NA	NA	NA	106424789	106427717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426492_106426528_106426635_106426681_106426913_106426991_106427078_106427173_106427334_106427472_106427551
ENSMUSG00000050357.10_106424790_106427717_3	chr8	+	1409	11	NNC	ENSMUSG00000050357.10	novel	2526	17	NA	NA	3094	2898	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	591	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGGGAGAGGAAGCACGTG	9383	False	NA	NA	False	NA	NA	NA	106424789	106427717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_106424961_106425039_106425132_106425245_106425596_106426026_106426117_106426210_106426363_106426492_106426528_106426635_106426681_106426913_106426991_106427078_106427173_106427334_106427472_106427551
ENSMUSG00000050357.10_106424790_106427717_4	chr8	+	1366	10	NIC	ENSMUSG00000050357.10	novel	2526	17	NA	NA	3094	2898	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	140	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGGGAGAGGAAGCACGTG	9383	False	NA	NA	False	NA	NA	NA	106424789	106427717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426363_106426492_106426528_106426635_106426681_106426913_106427035_106427334_106427472_106427551
ENSMUSG00000050357.10_106424790_106427717_5	chr8	+	1416	11	NIC	ENSMUSG00000050357.10	novel	2526	17	NA	NA	3094	2898	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	924	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGGGAGAGGAAGCACGTG	9383	False	NA	NA	False	NA	NA	NA	106424789	106427717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426363_106426492_106426528_106426635_106426681_106426913_106426991_106427078_106427173_106427334_106427472_106427551
ENSMUSG00000050357.10_106424790_106427717_6	chr8	+	1546	10	NIC	ENSMUSG00000050357.10	novel	2526	17	NA	NA	3094	2898	intron_retention	FALSE	non_canonical	0	0	junction_1	0	221	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGGGAGAGGAAGCACGTG	9383	False	NA	NA	False	NA	NA	NA	106424789	106427717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426528_106426635_106426681_106426913_106426991_106427078_106427173_106427334_106427472_106427551
ENSMUSG00000050373.14_164634688_164646751_1	chr2	+	1032	6	NNC	ENSMUSG00000050373.14	novel	1825	3	NA	NA	1116	11015	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	126	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGTTGAGAGAAACGCGGA	NA	False	NA	NA	False	NA	NA	NA	164634687	164646751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164634931_164636904_164637031_164637571_164637730_164641639_164641866_164644916_164645054_164646609
ENSMUSG00000050373.14_164634688_164646751_10	chr2	+	964	5	NIC	ENSMUSG00000050373.14	novel	1825	3	NA	NA	1116	11015	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	421	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGTTGAGAGAAACGCGGA	NA	False	NA	NA	False	NA	NA	NA	164634687	164646751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164646609
ENSMUSG00000050373.14_164634688_164646751_11	chr2	+	1573	5	NIC	ENSMUSG00000050373.14	novel	1825	3	NA	NA	1116	11015	intron_retention	FALSE	non_canonical	0	0	junction_1	0	118	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGTTGAGAGAAACGCGGA	NA	False	NA	NA	False	NA	NA	NA	164634687	164646751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_164634931_164636904_164637730_164641639_164641866_164644916_164645054_164646609
ENSMUSG00000050373.14_164634688_164646751_2	chr2	+	1092	5	NNC	ENSMUSG00000050373.14	novel	1825	3	NA	NA	1116	11015	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	335	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGTTGAGAGAAACGCGGA	NA	False	NA	NA	False	NA	NA	NA	164634687	164646751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164646481
ENSMUSG00000050373.14_164634688_164646751_3	chr2	+	1095	6	NNC	ENSMUSG00000050373.14	novel	1825	3	NA	NA	1116	11015	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2912	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGTTGAGAGAAACGCGGA	NA	False	NA	NA	False	NA	NA	NA	164634687	164646751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164634931_164636904_164637094_164637571_164637730_164641639_164641866_164644916_164645054_164646609
ENSMUSG00000050373.14_164634688_164646751_4	chr2	+	1089	6	NNC	ENSMUSG00000050373.14	novel	1825	3	NA	NA	1116	11015	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2477	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGTTGAGAGAAACGCGGA	NA	False	NA	NA	False	NA	NA	NA	164634687	164646751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164634931_164636904_164637100_164637571_164637730_164641639_164641854_164644916_164645054_164646609
ENSMUSG00000050373.14_164634688_164646751_5	chr2	+	1091	6	NNC	ENSMUSG00000050373.14	novel	1825	3	NA	NA	1116	11015	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2715	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGTTGAGAGAAACGCGGA	NA	False	NA	NA	False	NA	NA	NA	164634687	164646751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164644926_164645054_164646609
ENSMUSG00000050373.14_164634688_164646751_6	chr2	+	748	4	NIC	ENSMUSG00000050373.14	novel	1825	3	NA	NA	1116	11015	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGTTGAGAGAAACGCGGA	NA	False	NA	NA	False	NA	NA	NA	164634687	164646751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_164634931_164641639_164641866_164644916_164645054_164646609
ENSMUSG00000050373.14_164634688_164646751_7	chr2	+	1093	6	NNC	ENSMUSG00000050373.14	novel	1825	3	NA	NA	1116	11015	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1491	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGTTGAGAGAAACGCGGA	NA	False	NA	NA	False	NA	NA	NA	164634687	164646751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164634919_164636900_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
ENSMUSG00000050373.14_164634688_164646751_8	chr2	+	864	5	NNC	ENSMUSG00000050373.14	novel	1825	3	NA	NA	1116	11015	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	126	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGTTGAGAGAAACGCGGA	NA	False	NA	NA	False	NA	NA	NA	164634687	164646751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164634931_164636904_164637100_164637671_164637730_164641639_164641866_164646609
ENSMUSG00000050373.14_164634688_164646751_9	chr2	+	867	5	NIC	ENSMUSG00000050373.14	novel	1825	3	NA	NA	1116	11015	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	80	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGTTGAGAGAAACGCGGA	NA	False	NA	NA	False	NA	NA	NA	164634687	164646751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_164634931_164637001_164637100_164637571_164637730_164641639_164641866_164646609
ENSMUSG00000050410.16_35823631_35825623_1	chr17	-	704	2	ISM	ENSMUSG00000050410.16	ENSMUST00000160885.2	1732	4	2059	-3	1821	0	3prime_fragment	FALSE	canonical	3	75	junction_1	0	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCGTTGAATCTAAGTCT	9971	False	NA	-5	True	AATAAA	-20	NA	35825623	35823630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_35824082_35825370
ENSMUSG00000050424.10_72077594_72079550_1	chrX	-	1121	2	FSM	ENSMUSG00000050424.10	ENSMUST00000152209.2	1280	2	159	0	159	0	multi-exon	FALSE	canonical	1	35	junction_1	0	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTATGTTCTTTCTGGC	NA	False	NA	-7	True	AATAAA	-14	NA	72079550	72077593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72077934_72078769
ENSMUSG00000050435.3_113807479_113815641_1	chrX	+	925	3	NNC	ENSMUSG00000050435.3	novel	743	2	NA	NA	-7230	3	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	13	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCATTTTTTTTTTCTT	NA	False	NA	4	True	AATAAA	-19	NA	113807478	113815641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_113807624_113814674_113814900_113815086
ENSMUSG00000050471.18_35128531_35179076_1	chr9	-	1361	7	NNC	ENSMUSG00000050471.18	novel	1860	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_5	80.9334431630227	93	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGGCTCTACTTTG	6389	False	NA	-20	True	ATTAAA	-21	NA	35179076	35128530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35138459_35138522_35146526_35146780_35179018
ENSMUSG00000050471.18_35128531_35179076_2	chr9	-	1620	8	FSM	ENSMUSG00000050471.18	ENSMUST00000059057.14	1860	8	25	215	0	0	multi-exon	FALSE	canonical	3	113	junction_5	33.1724006256	880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGGCTCTACTTTG	6389	False	NA	-20	True	ATTAAA	-21	NA	35179076	35128530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35155909_35156003_35179018
ENSMUSG00000050471.18_35128531_35179076_3	chr9	-	1299	6	NIC	ENSMUSG00000050471.18	novel	1662	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_5	77.9143119073768	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGGCTCTACTTTG	6389	False	NA	-20	True	ATTAAA	-21	NA	35179076	35128530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35146526_35146780_35179018
ENSMUSG00000050471.18_35128531_35179076_4	chr9	-	1682	9	NIC	ENSMUSG00000050471.18	novel	1860	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_8	71.524471336739	660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGGCTCTACTTTG	6389	False	NA	-20	True	ATTAAA	-21	NA	35179076	35128530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35155909_35156003_35159964_35160027_35179018
ENSMUSG00000050471.18_35128531_35179076_5	chr9	-	1392	7	FSM	ENSMUSG00000050471.18	ENSMUST00000063782.12	1662	7	0	270	0	0	multi-exon	FALSE	canonical	3	54	junction_4	50.0954644209988	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGGCTCTACTTTG	6389	False	NA	-20	True	ATTAAA	-21	NA	35179076	35128530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35146526_35146780_35155909_35156003_35179018
ENSMUSG00000050545.11_4797907_4819232_1	chr12	-	1160	7	FSM	ENSMUSG00000050545.11	ENSMUST00000053458.7	2851	7	0	1691	0	0	multi-exon	FALSE	canonical	3	18	junction_3	2.69258240356725	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCGTATGTGATATTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	4819232	4797906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_4798178_4798263_4798352_4812326_4812408_4812999_4813192_4814078_4814148_4818389_4818522_4818905
ENSMUSG00000050552.9_138254016_138257657_1	chr5	+	605	4	FSM	ENSMUSG00000050552.9	ENSMUST00000062067.8	877	4	272	0	-77	0	multi-exon	FALSE	canonical	3	258	junction_1	67.9084350839832	5015	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGTGTGCACAGAATGGT	NA	False	NA	35	True	AATAAA	-27	NA	138254015	138257657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_138254066_138254514_138254596_138256916_138257035_138257301
ENSMUSG00000050552.9_138254016_138257657_2	chr5	+	600	4	NNC	ENSMUSG00000050552.9	novel	877	4	NA	NA	-77	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	160.535215935805	4650	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGTGTGCACAGAATGGT	NA	False	NA	35	True	AATAAA	-27	NA	138254015	138257657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_138254066_138254514_138254596_138256916_138257030_138257301
ENSMUSG00000050555.10_35470762_35478439_1	chr9	-	1341	3	NIC	ENSMUSG00000050555.10	novel	4269	2	NA	NA	2954	1354	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTCAGTAAGCATGCGCG	NA	False	NA	NA	False	NA	NA	NA	35478439	35470761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_35470814_35476585_35477152_35477716
ENSMUSG00000050555.10_35470762_35478439_2	chr9	-	1755	4	NIC	ENSMUSG00000050555.10	novel	4269	2	NA	NA	2954	1354	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTCAGTAAGCATGCGCG	NA	False	NA	NA	False	NA	NA	NA	35478439	35470761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_35470814_35476079_35476494_35476585_35477152_35477716
ENSMUSG00000050555.10_35470762_35478697_1	chr9	-	2013	4	NIC	ENSMUSG00000050555.10	novel	4269	2	NA	NA	2696	1354	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTCAGTAAGCATGCGCG	NA	False	NA	NA	False	NA	NA	NA	35478697	35470761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_35470814_35476079_35476494_35476585_35477152_35477716
ENSMUSG00000050555.10_35472116_35481399_1	chr9	-	1678	4	FSM	ENSMUSG00000050555.10	ENSMUST00000115110.5	1973	4	295	0	-6	0	multi-exon	FALSE	canonical	3	233	junction_2	23.2808934536456	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGAACCTTGTTTTA	NA	False	NA	51	True	ATTAAA	-17	NA	35481399	35472115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_35473401_35475358_35475474_35479750_35479802_35481172
ENSMUSG00000050555.10_35472368_35481399_1	chr9	-	1426	4	FSM	ENSMUSG00000050555.10	ENSMUST00000115110.5	1973	4	295	252	-6	-252	multi-exon	FALSE	canonical	3	233	junction_2	23.2808934536456	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGACTTCACTGGTTCTT	NA	False	NA	NA	False	AATATA	-31	NA	35481399	35472367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_35473401_35475358_35475474_35479750_35479802_35481172
ENSMUSG00000050565.17_155882527_155911796_1	chr1	+	1746	11	NIC	ENSMUSG00000050565.17	novel	6118	7	NA	NA	-28622	-15619	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCTGAAAACCTCACTTC	NA	False	NA	NA	False	GGGGCT	-27	NA	155882526	155911796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_155883456_155889063_155889121_155893256_155893326_155893963_155894006_155895713_155895770_155898045_155898127_155898894_155898934_155906132_155906178_155907159_155907220_155909471_155909547_155911503
ENSMUSG00000050565.17_155916636_155928544_1	chr1	+	1678	3	FSM	ENSMUSG00000050565.17	ENSMUST00000097526.3	2589	3	-27	938	0	-731	multi-exon	FALSE	canonical	3	163	junction_1	41.5	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTTCTAATTTTCTCCT	NA	False	NA	10	True	AATAAA	-14	NA	155916635	155928544	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_155916749_155916820_155916881_155927039
ENSMUSG00000050565.17_155916636_155929276_1	chr1	+	2410	3	FSM	ENSMUSG00000050565.17	ENSMUST00000097526.3	2589	3	-27	206	0	1	multi-exon	FALSE	canonical	3	163	junction_1	41.5	1039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCAGGTTTTATTGTTT	NA	False	NA	4	True	AATAAA	-16	NA	155916635	155929276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_155916749_155916820_155916881_155927039
ENSMUSG00000050605.18_23990464_23998723_1	chr7	-	2103	7	FSM	ENSMUSG00000050605.18	ENSMUST00000077780.14	2480	7	377	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	4.81028989655394	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTGGATTCTTTGTGTG	NA	False	NA	7	True	TATAAA	-23	NA	23998723	23990463	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_23991930_23992769_23992860_23994379_23994507_23995403_23995450_23996997_23997164_23997698_23997801_23998617
ENSMUSG00000050605.18_23990464_23998826_1	chr7	-	2206	7	FSM	ENSMUSG00000050605.18	ENSMUST00000077780.14	2480	7	274	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	4.81028989655394	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTGGATTCTTTGTGTG	NA	False	NA	7	True	TATAAA	-23	NA	23998826	23990463	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_23991930_23992769_23992860_23994379_23994507_23995403_23995450_23996997_23997164_23997698_23997801_23998617
ENSMUSG00000050608.12_138831102_138858349_1	chr4	-	497	4	FSM	ENSMUSG00000050608.12	ENSMUST00000143971.2	2549	4	75	1977	-44	0	multi-exon	FALSE	canonical	3	2580	junction_1	67.4553350167518	40999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGCAAGCAATGCCTTT	5254	False	NA	-20	True	AATAAA	-16	NA	138858349	138831101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_138831324_138832300_138832411_138833166_138833215_138858232
ENSMUSG00000050608.12_138831213_138858349_1	chr4	-	386	4	FSM	ENSMUSG00000050608.12	ENSMUST00000143971.2	2549	4	75	2088	-44	0	multi-exon	FALSE	canonical	3	2580	junction_1	67.4553350167518	1518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAACGCTTTCAACTCCAG	5254	False	NA	-131	True	NA	NA	NA	138858349	138831212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_138831324_138832300_138832411_138833166_138833215_138858232
ENSMUSG00000050623.6_6899798_6902727_1	chr19	-	612	3	NIC	ENSMUSG00000050623.6	novel	806	5	NA	NA	0	0	intron_retention	TRUE	canonical	1	1	junction_1	17.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGAGTCAGTGCGTGGC	7411	False	NA	-6	True	ATTAAA	-15	NA	6902727	6899797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_6900029_6902161_6902475_6902659
ENSMUSG00000050627.14_114731016_114762757_1	chr9	-	1486	8	FSM	ENSMUSG00000050627.14	ENSMUST00000146623.8	4391	8	298	2607	190	1398	multi-exon	FALSE	canonical	3	102	junction_4	10.5540397527222	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGTTTGAAGACCACCA	NA	False	NA	NA	False	ATTAAA	-15	NA	114762757	114731015	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_114731571_114732728_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
ENSMUSG00000050628.7_116325182_116329382_1	chr11	+	699	3	FSM	ENSMUSG00000050628.7	ENSMUST00000057676.7	1482	3	262	521	-153	333	multi-exon	TRUE	canonical	3	1535	junction_2	51	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATGTTTGTGAGAGTGGG	NA	False	NA	91	True	NA	NA	NA	116325181	116329382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116325255_116325384_116325448_116328819
ENSMUSG00000050628.7_116325186_116329903_1	chr11	+	1216	3	FSM	ENSMUSG00000050628.7	ENSMUST00000057676.7	1482	3	266	0	-149	0	multi-exon	FALSE	canonical	3	1535	junction_2	51	1422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTGTTTTTGTTTTTGC	NA	False	NA	36	True	TTTAAA	-29	NA	116325185	116329903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116325255_116325384_116325448_116328819
ENSMUSG00000050668.11_79142996_79152671_1	chr17	+	963	9	NIC	ENSMUSG00000050668.11	novel	4134	10	NA	NA	0	-116	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	40.2086355774478	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCCTTTGTATAGCACT	8830	False	NA	12	True	AATAAA	-28	NA	79142995	79152671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_79143108_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541_79149659_79151247_79151330_79152572
ENSMUSG00000050668.11_79143018_79152671_1	chr17	+	1068	10	FSM	ENSMUSG00000050668.11	ENSMUST00000170759.3	4134	10	0	3066	0	-116	multi-exon	FALSE	canonical	3	101	junction_6	15.3405779986718	631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCCTTTGTATAGCACT	8852	False	NA	12	True	AATAAA	-28	NA	79143017	79152671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_79143108_79144222_79144350_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541_79149659_79151247_79151330_79152572
ENSMUSG00000050668.11_79143018_79152787_1	chr17	+	1057	9	NIC	ENSMUSG00000050668.11	novel	4134	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	40.2086355774478	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACAAGTGATGTGGCATT	8852	False	NA	8	True	AATACA	-20	NA	79143017	79152787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_79143108_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541_79149659_79151247_79151330_79152572
ENSMUSG00000050668.11_79143018_79152787_2	chr17	+	1184	10	FSM	ENSMUSG00000050668.11	ENSMUST00000170759.3	4134	10	0	2950	0	0	multi-exon	FALSE	canonical	3	101	junction_6	15.3405779986718	1251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACAAGTGATGTGGCATT	8852	False	NA	8	True	AATACA	-20	NA	79143017	79152787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_79143108_79144222_79144350_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541_79149659_79151247_79151330_79152572
ENSMUSG00000050697.10_5173373_5208414_1	chr15	+	1659	9	FSM	ENSMUSG00000050697.10	ENSMUST00000228218.2	4618	9	0	2959	0	-2959	multi-exon	FALSE	canonical	3	109	junction_2	19.5316249964001	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAAATTTTGCTTATTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	5173372	5208414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_5173478_5190083_5190226_5194192_5194287_5198048_5198194_5199409_5199498_5203688_5203914_5205966_5206454_5206559_5206687_5208168
ENSMUSG00000050697.10_5173373_5208414_2	chr15	+	1565	8	NIC	ENSMUSG00000050697.10	novel	4618	9	NA	NA	0	-2959	combination_of_known_splicesites	FALSE	canonical	3	34	junction_2	45.007482371132	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAAATTTTGCTTATTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	5173372	5208414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_5173478_5190083_5190226_5198048_5198194_5199409_5199498_5203688_5203914_5205966_5206454_5206559_5206687_5208168
ENSMUSG00000050705.16_36203569_36208242_1	chr17	-	1206	6	NNC	ENSMUSG00000050705.16	novel	1293	6	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	159.53858467468	869	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	False	NA	-3	True	AATAAA	-19	NA	36208242	36203568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206959_36208082
ENSMUSG00000050708.17_45107368_45109263_1	chr7	-	918	4	NNC	ENSMUSG00000050708.17	novel	968	4	NA	NA	0	0	intron_retention	TRUE	non_canonical	0	0	junction_1	33952.9163630395	69249	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109263	45107367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_45107708_45107963_45108085_45108507_45108655_45108953
ENSMUSG00000050708.17_45107368_45109263_10	chr7	-	1346	3	NIC	ENSMUSG00000050708.17	novel	943	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	56898	junction_1	8751.5	1856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109263	45107367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_45107708_45107958_45108655_45108953
ENSMUSG00000050708.17_45107368_45109263_2	chr7	-	1222	3	FSM	ENSMUSG00000050708.17	ENSMUST00000211500.2	825	3	-376	-21	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	6244.5	3100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109263	45107367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45107708_45107958_45108085_45108507
ENSMUSG00000050708.17_45107368_45109263_3	chr7	-	912	4	NNC	ENSMUSG00000050708.17	novel	968	4	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	33952.9163630395	10360	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109263	45107367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_45107697_45107958_45108085_45108507_45108655_45108953
ENSMUSG00000050708.17_45107368_45109263_4	chr7	-	918	4	NNC	ENSMUSG00000050708.17	novel	968	4	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_3	30199.1782338527	35539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109263	45107367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_45107708_45107958_45108085_45108507_45108636_45108939
ENSMUSG00000050708.17_45107368_45109263_5	chr7	-	881	4	NNC	ENSMUSG00000050708.17	novel	968	4	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_3	30199.1782338527	5242	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109263	45107367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_45107708_45107958_45108085_45108507_45108655_45108995
ENSMUSG00000050708.17_45107368_45109263_6	chr7	-	910	4	NNC	ENSMUSG00000050708.17	novel	968	4	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	33952.9163630395	13333	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109263	45107367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_45107708_45107971_45108085_45108507_45108655_45108953
ENSMUSG00000050708.17_45107368_45109263_7	chr7	-	915	4	NNC	ENSMUSG00000050708.17	novel	968	4	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_3	30199.1782338527	26765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109263	45107367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_45107708_45107958_45108085_45108507_45108633_45108939
ENSMUSG00000050708.17_45107368_45109263_8	chr7	-	903	4	NNC	ENSMUSG00000050708.17	novel	968	4	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	33952.9163630395	3283	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109263	45107367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_45107688_45107958_45108085_45108507_45108655_45108953
ENSMUSG00000050708.17_45107368_45109263_9	chr7	-	911	4	NNC	ENSMUSG00000050708.17	novel	968	4	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	33952.9163630395	16583	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109263	45107367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_45107708_45107970_45108085_45108507_45108655_45108953
ENSMUSG00000050737.14_30781792_30793309_1	chr2	-	1255	2	NIC	ENSMUSG00000050737.14	novel	3647	3	NA	NA	0	502	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	0	785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCGGTGTCTAAGACCCA	8411	False	NA	NA	False	ATTAAA	-22	NA	30793309	30781791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_30782839_30793101
ENSMUSG00000050737.14_30781792_30793309_2	chr2	-	1338	3	FSM	ENSMUSG00000050737.14	ENSMUST00000102852.6	3647	3	0	2309	0	502	multi-exon	FALSE	canonical	3	78	junction_1	10.5	1114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCGGTGTCTAAGACCCA	8411	False	NA	NA	False	ATTAAA	-22	NA	30793309	30781791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_30782839_30790878_30790962_30793101
ENSMUSG00000050737.14_30782294_30793309_1	chr2	-	836	3	FSM	ENSMUSG00000050737.14	ENSMUST00000102852.6	3647	3	0	2811	0	0	multi-exon	FALSE	canonical	3	78	junction_1	10.5	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGACAGGATTGACCAACA	8411	False	NA	NA	False	CATAAA	-4	NA	30793309	30782293	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_30782839_30790878_30790962_30793101
ENSMUSG00000050777.8_119995253_120001510_1	chr1	-	871	2	FSM	ENSMUSG00000050777.8	ENSMUST00000056089.8	1311	2	294	146	294	-146	multi-exon	FALSE	canonical	3	40	junction_1	0	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGTATCCTAAAATGTC	NA	False	NA	NA	False	ATTAAA	-19	NA	120001510	119995252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_119996055_120001441
ENSMUSG00000050786.9_49296241_49317708_1	chr6	+	1510	3	FSM	ENSMUSG00000050786.9	ENSMUST00000055559.8	2351	3	33	808	0	-804	multi-exon	FALSE	canonical	3	46	junction_2	7.5	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGCTGTTGGTTTGAAA	NA	False	NA	NA	False	AATAAA	-21	NA	49296240	49317708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_49296415_49310844_49311232_49316759
ENSMUSG00000050855.17_29543361_29553096_1	chr7	-	2858	5	NNC	ENSMUSG00000050855.17	novel	2764	5	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	9.83298021964857	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGTGTGACTTTGTGGTG	3421	False	NA	-4	True	AATAAA	-21	NA	29553096	29543360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_29545674_29545893_29545990_29546258_29546386_29550366_29550443_29552850
ENSMUSG00000050891.11_58771780_58781498_1	chr15	-	1415	4	ISM	ENSMUSG00000050891.11	ENSMUST00000227540.2	1819	10	24089	0	6529	0	3prime_fragment	FALSE	canonical	3	108	junction_3	7.11805216802087	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTTGAGTTATCCTTGA	NA	False	NA	-3	True	AATAAA	-16	NA	58781498	58771779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421
ENSMUSG00000050891.11_58772823_58781498_1	chr15	-	514	5	ISM	ENSMUSG00000050891.11	ENSMUST00000238706.2	498	6	6529	-43	6529	0	3prime_fragment	FALSE	canonical	1	1	junction_2	56.7208074695698	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58781498	58772822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_58772920_58776128_58776271_58776582_58776710_58777589_58777661_58781421
ENSMUSG00000050891.11_58772823_58805587_1	chr15	-	1002	11	NIC	ENSMUSG00000050891.11	novel	915	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_9	35.5971909004067	855	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58805587	58772822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58798284_58798335_58800392_58800599_58805527
ENSMUSG00000050891.11_58772823_58805587_2	chr15	-	1002	12	NIC	ENSMUSG00000050891.11	novel	915	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_8	30.1270038941207	1485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58805587	58772822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58795677_58795818_58798284_58798335_58800532_58800599_58805527
ENSMUSG00000050891.11_58772823_58805587_3	chr15	-	1066	12	NIC	ENSMUSG00000050891.11	novel	915	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_10	29.9911832774261	1327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58805587	58772822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58795753_58795818_58798284_58798335_58800392_58800599_58805527
ENSMUSG00000050891.11_58772823_58805587_4	chr15	-	776	10	FSM	ENSMUSG00000050891.11	ENSMUST00000227540.2	1819	10	0	1043	0	0	multi-exon	FALSE	canonical	3	9	junction_5	38.5140666943045	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58805587	58772822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58792988_58793032_58793122_58793267_58798284_58798335_58800532_58800599_58805527
ENSMUSG00000050891.11_58772823_58805587_5	chr15	-	1003	13	NNC	ENSMUSG00000050891.11	novel	915	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_9	38.5748730825305	1495	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58805587	58772822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58794155_58794233_58795753_58795818_58798284_58798335_58800532_58800599_58805527
ENSMUSG00000050891.11_58799918_58805576_1	chr15	-	730	2	FSM	ENSMUSG00000050891.11	ENSMUST00000226141.2	2089	2	-14	1373	0	-1373	multi-exon	FALSE	canonical	3	108	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACAAAGTGTGGTGTGCTG	NA	False	NA	NA	False	AATAAA	-34	NA	58805576	58799917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_58800599_58805527
ENSMUSG00000050908.13_10229813_10241395_1	chr16	-	1223	11	NIC	ENSMUSG00000050908.13	novel	3315	7	NA	NA	5654	8608	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2461	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGAACCTCAGGGGCGTGT	NA	False	NA	NA	False	NA	NA	NA	10241395	10229812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119_10238211_10238837_10238993_10239090_10239202_10239440_10239544_10240685_10240770_10241104
ENSMUSG00000050908.13_10229813_10242292_1	chr16	-	2120	11	NIC	ENSMUSG00000050908.13	novel	3315	7	NA	NA	4757	8608	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2676	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGAACCTCAGGGGCGTGT	NA	False	NA	NA	False	NA	NA	NA	10242292	10229812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119_10238211_10238837_10238993_10239090_10239202_10239440_10239544_10240685_10240770_10241104
ENSMUSG00000050912.16_7764150_7794334_1	chr9	+	2799	5	FSM	ENSMUSG00000050912.16	ENSMUST00000052865.16	2907	5	108	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	14.5086181285469	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTAGTGTTTTGTTGAA	32	True	NA	16	True	AATAAA	-19	NA	7764149	7794334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_7764314_7768290_7768342_7790842_7791110_7791311_7791466_7792171
ENSMUSG00000050914.17_46449939_46452904_1	chr8	-	693	5	NNC	ENSMUSG00000050914.17	novel	927	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	21.901769334919	430	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTGCATTCTTTACTA	NA	False	NA	NA	False	ATTAAA	-22	NA	46452904	46449938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_46450163_46450650_46450858_46451433_46451526_46452279_46452441_46452895
ENSMUSG00000050914.17_46449939_46452904_2	chr8	-	685	5	NNC	ENSMUSG00000050914.17	novel	927	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_4	13.6083614002568	624	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTGCATTCTTTACTA	NA	False	NA	NA	False	ATTAAA	-22	NA	46452904	46449938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452895
ENSMUSG00000050914.17_46449939_46452904_3	chr8	-	935	5	NNC	ENSMUSG00000050914.17	novel	927	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	22.561028345357	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTGCATTCTTTACTA	NA	False	NA	NA	False	ATTAAA	-22	NA	46452904	46449938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_46450163_46450650_46450858_46451433_46451526_46452279_46452441_46452653
ENSMUSG00000050954.16_48593010_48666927_1	chr13	-	849	6	NNC	ENSMUSG00000050954.16	novel	4175	4	NA	NA	0	48113	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6.82934843158555	32	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTAGTGCTGCCGAACC	NA	False	NA	NA	False	NA	NA	NA	48666927	48593009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_48593423_48630119_48630181_48651798_48651895_48652255_48652383_48660382_48660470_48666862
ENSMUSG00000050973.12_79882613_79888369_1	chr7	+	749	2	FSM	ENSMUSG00000050973.12	ENSMUST00000062915.9	4189	2	0	3440	0	-3440	multi-exon	FALSE	canonical	3	81	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTTTTCCGGATGCAAAG	NA	False	NA	NA	False	AATAAA	-16	NA	79882612	79888369	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_79882954_79887961
ENSMUSG00000050973.12_79882613_79889556_1	chr7	+	1936	2	FSM	ENSMUSG00000050973.12	ENSMUST00000062915.9	4189	2	0	2253	0	-2253	multi-exon	FALSE	canonical	3	81	junction_1	0	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTTGTTGTTGTTTTC	NA	False	NA	8	True	AGTAAA	-11	NA	79882612	79889556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_79882954_79887961
ENSMUSG00000051007.16_140988097_140993989_1	chr7	-	1448	8	FSM	ENSMUSG00000051007.16	ENSMUST00000106008.3	1898	8	60	390	0	0	multi-exon	FALSE	canonical	3	140	junction_4	16.4564980032391	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTGTTGTTGTTTGTTT	5497	False	NA	-1	True	NA	NA	NA	140993989	140988096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140988878_140989001_140989114_140989243_140989338_140989758_140989854_140990690_140990799_140990898_140991005_140991710_140991788_140993914
ENSMUSG00000051007.16_140988437_140993989_1	chr7	-	1108	8	FSM	ENSMUSG00000051007.16	ENSMUST00000106008.3	1898	8	60	730	0	-325	multi-exon	FALSE	canonical	3	140	junction_4	16.4564980032391	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCCTATGCAATGGTGT	5497	False	NA	NA	False	NA	NA	NA	140993989	140988436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140988878_140989001_140989114_140989243_140989338_140989758_140989854_140990690_140990799_140990898_140991005_140991710_140991788_140993914
ENSMUSG00000051022.8_39771408_39801991_1	chr5	-	1572	2	FSM	ENSMUSG00000051022.8	ENSMUST00000053116.7	1684	2	-14	126	-14	-126	multi-exon	FALSE	canonical	3	8	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTCTTTTTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	39801991	39771407	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_39772748_39801759
ENSMUSG00000051048.18_99954707_99968908_1	chr7	+	1587	8	ISM	ENSMUSG00000051048.18	ENSMUST00000208565.2	1215	9	3919	-464	3919	2	3prime_fragment	FALSE	canonical	1	3	junction_5	4.23300925429402	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCTAACAGCGACTATTC	NA	False	NA	10	True	ATTAAA	-17	NA	99954706	99968908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_99954871_99955073_99955251_99959993_99960059_99962412_99962573_99963814_99963878_99966248_99966318_99967188_99967286_99968116
ENSMUSG00000051098.7_81859217_81898612_1	chr13	+	1418	2	FSM	ENSMUSG00000051098.7	ENSMUST00000057598.7	3957	2	-243	2782	-243	147	multi-exon	FALSE	canonical	3	18	junction_1	0	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81859216	81898612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_81860102_81898079
ENSMUSG00000051098.7_81859460_81898612_1	chr13	+	1175	2	FSM	ENSMUSG00000051098.7	ENSMUST00000057598.7	3957	2	0	2782	0	147	multi-exon	FALSE	canonical	3	18	junction_1	0	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81859459	81898612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_81860102_81898079
ENSMUSG00000051159.17_101290987_101295191_1	chrX	-	846	3	FSM	ENSMUSG00000051159.17	ENSMUST00000101336.10	1090	3	267	-23	267	0	multi-exon	FALSE	canonical	3	50	junction_2	78.5	1442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGCCTGGGTGTGTTCTT	NA	False	NA	0	True	AATAAA	-20	NA	101295191	101290986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_101291615_101292168_101292294_101295098
ENSMUSG00000051159.17_101290987_101295686_1	chrX	-	800	3	FSM	ENSMUSG00000051159.17	ENSMUST00000050551.10	901	3	101	0	101	0	multi-exon	FALSE	canonical	3	131	junction_2	38	1577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGCCTGGGTGTGTTCTT	NA	False	NA	0	True	AATAAA	-20	NA	101295686	101290986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_101291615_101292168_101292294_101295639
ENSMUSG00000051169.15_113392290_113396309_1	chr6	-	1127	8	NIC	ENSMUSG00000051169.15	novel	1224	9	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	61.7423877816496	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAAGCAGATGTTTACC	NA	False	NA	-18	True	AATAAA	-32	NA	113396309	113392289	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_113392684_113393749_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
ENSMUSG00000051176.7_43748100_43758914_1	chr8	-	1834	4	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	1059	0	at_least_one_novel_splicesite	FALSE	canonical	3	231	junction_3	1920.37050823243	6900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43758914	43748099	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758716
ENSMUSG00000051176.7_43748100_43759973_1	chr8	-	1867	5	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_4	2131.08874756543	16053	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43759973	43748099	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758460_43758596_43759877
ENSMUSG00000051176.7_43749244_43760039_1	chr8	-	654	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	-22	1140	-22	-1140	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGAAGAGGATTTCCTT	NA	False	NA	NA	False	NA	NA	NA	43760039	43749243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
ENSMUSG00000051176.7_43749484_43760039_1	chr8	-	414	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	-22	1380	-22	-1380	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAATGAACAAATGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	43760039	43749483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
ENSMUSG00000051185.10_95241928_95262199_1	chr1	+	722	3	FSM	ENSMUSG00000051185.10	ENSMUST00000059975.8	2112	3	580	810	575	-810	multi-exon	FALSE	canonical	3	133	junction_2	1	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAGTGGTACAGATAGAA	NA	False	NA	3	True	AATAAA	-16	NA	95241927	95262199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_95241976_95252833_95252969_95261660
ENSMUSG00000051220.3_101186563_101200697_1	chrX	-	4061	2	FSM	ENSMUSG00000051220.3	ENSMUST00000056904.3	5302	2	0	1241	0	-1241	multi-exon	FALSE	canonical	3	249	junction_1	0	342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTTTCCATTCATTTTC	NA	False	NA	-3	True	ATTAAA	-15	NA	101200697	101186562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_101190440_101200513
ENSMUSG00000051223.15_58432291_58444646_1	chr1	+	1776	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	234	1866	0	0	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	1125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAAGGGCAATGATTT	891	False	NA	-2	True	ATTAAA	-18	NA	58432290	58444646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
ENSMUSG00000051223.15_58432291_58445712_1	chr1	+	2842	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	234	800	0	-800	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	2155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTTATAGATCAGTCTTT	891	False	NA	23	True	AATAAA	-18	NA	58432290	58445712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
ENSMUSG00000051232.14_78397881_78402998_1	chr11	-	1340	6	NNC	ENSMUSG00000051232.14	novel	1347	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	223.381825581223	2510	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATCTTTGGTCTTAAA	1631	False	NA	-29	True	AATAAA	-21	NA	78402998	78397880	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_78398632_78399144_78399258_78399478_78399522_78400550_78400641_78401173_78401241_78402722
ENSMUSG00000051232.14_78397881_78402998_2	chr11	-	1352	6	NNC	ENSMUSG00000051232.14	novel	1347	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	216.338253667723	2511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATCTTTGGTCTTAAA	1631	False	NA	-29	True	AATAAA	-21	NA	78402998	78397880	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_78398632_78399144_78399258_78399473_78399522_78400550_78400641_78401173_78401248_78402722
ENSMUSG00000051234.7_96353407_96360646_1	chr9	-	733	3	FSM	ENSMUSG00000051234.7	ENSMUST00000057500.6	1232	3	82	417	-5	409	multi-exon	FALSE	canonical	3	1085	junction_1	10	3762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCCTCCTAATCCTTTTT	3795	False	NA	-1	True	AATAAA	-16	NA	96360646	96353406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_96353906_96356010_96356059_96360460
ENSMUSG00000051238.7_21867051_21869560_1	chr9	+	1815	3	NNC	ENSMUSG00000051238.7	novel	1838	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	36	290	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGACTCTGGTGGTCTG	NA	False	NA	8	True	NA	NA	NA	21867050	21869560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_21867301_21867972_21869149_21869171
ENSMUSG00000051256.11_113419571_113425173_1	chr6	+	975	2	NNC	ENSMUSG00000051256.11	novel	1147	2	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_1	0	807	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAAGACTGTCCTGTGCCT	NA	False	NA	16	True	AATAAA	-20	NA	113419570	113425173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_113419591_113424218
ENSMUSG00000051257.4_138234610_138238918_1	chrX	+	1000	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	178	0	178	0	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	18129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTTCACGTTAACGT	NA	False	NA	20	True	AATAAA	-21	NA	138234609	138238918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_138235157_138237570_138237800_138238694
ENSMUSG00000051257.4_138234734_138238918_1	chrX	+	876	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	302	0	302	0	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	9166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTTCACGTTAACGT	NA	False	NA	20	True	AATAAA	-21	NA	138234733	138238918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_138235157_138237570_138237800_138238694
ENSMUSG00000051257.4_138234894_138238918_1	chrX	+	716	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	462	0	462	0	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	5683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTTCACGTTAACGT	NA	False	NA	20	True	AATAAA	-21	NA	138234893	138238918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_138235157_138237570_138237800_138238694
ENSMUSG00000051257.4_138237749_138238918_1	chrX	+	275	2	ISM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	3317	0	3317	0	3prime_fragment	FALSE	canonical	3	2592	junction_1	0	2517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTTCACGTTAACGT	NA	False	NA	20	True	AATAAA	-21	NA	138237748	138238918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_138237800_138238694
ENSMUSG00000051278.13_127347138_127354824_1	chr3	+	678	5	ISM	ENSMUSG00000051278.13	ENSMUST00000195955.2	3804	6	-144	3663	0	-3663	5prime_fragment	FALSE	canonical	3	63	junction_3	5.7227615711298	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCTTCATTGTTTACTT	NA	False	NA	NA	False	AGTAAA	-26	NA	127347137	127354824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_127347305_127348944_127349035_127349841_127349923_127353219_127353280_127354544
ENSMUSG00000051278.13_127347138_127355087_1	chr3	+	941	5	ISM	ENSMUSG00000051278.13	ENSMUST00000195955.2	3804	6	-144	3400	0	-3400	5prime_fragment	FALSE	canonical	3	63	junction_3	5.7227615711298	205	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGGTATAGCTGACAATT	NA	False	NA	NA	False	AATAAA	-20	NA	127347137	127355087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_127347305_127348944_127349035_127349841_127349923_127353219_127353280_127354544
ENSMUSG00000051297.9_92267845_92294258_1	chr16	+	604	3	NNC	ENSMUSG00000051297.9	novel	706	3	NA	NA	-7785	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGTCTAGAGTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	92267844	92294258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_92267966_92288901_92289064_92293937
ENSMUSG00000051316.9_37775075_37777257_1	chr18	-	1771	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	0	1531	0	-1531	multi-exon	FALSE	canonical	3	1260	junction_1	0	1493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGATGTTGTTCTATGAAT	NA	False	NA	-2	True	AATAAA	-21	NA	37777257	37775074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_37776586_37776997
ENSMUSG00000051316.9_37776200_37777257_1	chr18	-	646	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	0	2656	0	-2656	multi-exon	FALSE	canonical	3	1260	junction_1	0	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GATAAGGACAAAGAGAAAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	37777257	37776199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_37776586_37776997
ENSMUSG00000051319.7_127633666_127634171_1	chr2	-	205	2	FSM	ENSMUSG00000051319.7	ENSMUST00000135091.2	800	2	237	358	237	-358	multi-exon	FALSE	canonical	3	537	junction_1	0	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATCTTTTTCCTCCTC	NA	False	NA	-11	True	AATAAA	-13	NA	127634171	127633665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_127633753_127634053
ENSMUSG00000051319.7_127633666_127634408_1	chr2	-	442	2	FSM	ENSMUSG00000051319.7	ENSMUST00000135091.2	800	2	0	358	0	-358	multi-exon	FALSE	canonical	3	537	junction_1	0	8829	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATCTTTTTCCTCCTC	NA	False	NA	-11	True	AATAAA	-13	NA	127634408	127633665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_127633753_127634053
ENSMUSG00000051329.14_90509729_90514642_1	chr2	+	613	3	ISM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	2170	52030	2170	-8222	internal_fragment	FALSE	canonical	3	579	junction_2	41.5	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACAGAGTACTTGCCTAG	NA	False	NA	NA	False	ATTAAA	-17	NA	90509728	90514642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_90509853_90510115_90510228_90514265
ENSMUSG00000051329.14_90509729_90514814_1	chr2	+	785	3	ISM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	2170	51858	2170	-8050	internal_fragment	FALSE	canonical	3	579	junction_2	41.5	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTTTTTCTTTCAGAA	NA	False	NA	NA	False	GATAAA	-1	NA	90509728	90514814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_90509853_90510115_90510228_90514265
ENSMUSG00000051329.14_90509729_90524591_1	chr2	+	1517	9	ISM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	2170	42081	2170	8	internal_fragment	FALSE	canonical	3	521	junction_6	48.3806521245839	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGTATGATTATTTGAAAC	NA	False	NA	NA	False	AATAAA	-19	NA	90509728	90524591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_90509853_90510115_90510228_90514265_90514477_90515316_90515540_90517637_90517717_90519449_90519565_90520410_90520570_90523396_90523475_90524175
ENSMUSG00000051329.14_90544138_90566672_1	chr2	+	2340	14	ISM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	36579	0	-3765	0	3prime_fragment	FALSE	canonical	3	510	junction_2	69.9022986814221	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGTATATTAAGATTTAT	NA	False	NA	16	True	AATAAA	-18	NA	90544137	90566672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_90544238_90547937_90548034_90548157_90548253_90548342_90548440_90548531_90548638_90551533_90551695_90552373_90552435_90553680_90553792_90553955_90554080_90555945_90556048_90560022_90560165_90563124_90563251_90563449_90563555_90565758
ENSMUSG00000051346.10_128045952_128047676_1	chr10	-	1408	2	FSM	ENSMUSG00000051346.10	ENSMUST00000061995.10	1583	2	0	175	0	-175	multi-exon	FALSE	canonical	3	299	junction_1	0	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGGTGAAACAGTTGAATA	NA	False	NA	-7	True	AATAAA	-25	NA	128047676	128045951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128047261_128047577
ENSMUSG00000051355.19_22849764_22932259_1	chr11	-	757	3	FSM	ENSMUSG00000051355.19	ENSMUST00000159081.8	4508	3	123	3628	-7	0	multi-exon	FALSE	canonical	3	2089	junction_1	53.5	14285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGTGGGTAAAAAAGAG	NA	False	NA	-36	True	AATATA	-5	NA	22932259	22849763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_22850058_22906410_22906693_22932078
ENSMUSG00000051379.13_140501245_140513389_1	chr2	-	2850	3	FSM	ENSMUSG00000051379.13	ENSMUST00000110057.3	3977	3	0	1127	0	0	multi-exon	FALSE	canonical	3	47	junction_1	10.5	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATACA	-5	NA	140513389	140501244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_140503672_140505180_140505380_140513165
ENSMUSG00000051391.10_135939367_135963451_1	chr5	-	1414	2	FSM	ENSMUSG00000051391.10	ENSMUST00000055808.6	3520	2	2	2104	0	-2104	multi-exon	FALSE	canonical	3	925	junction_1	0	800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCCCCCTGGGGTGTAC	NA	False	NA	NA	False	NA	NA	NA	135963451	135939366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_135940506_135963176
ENSMUSG00000051391.10_135940341_135963451_1	chr5	-	440	2	FSM	ENSMUSG00000051391.10	ENSMUST00000055808.6	3520	2	2	3078	0	-3078	multi-exon	FALSE	canonical	3	925	junction_1	0	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCGGGAGAAGATCGAGAA	NA	False	NA	NA	False	NA	NA	NA	135963451	135940340	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_135940506_135963176
ENSMUSG00000051435.12_141643600_141648176_1	chr4	-	585	4	ISM	ENSMUSG00000051435.12	ENSMUST00000137618.2	865	5	1561	0	1561	0	3prime_fragment	FALSE	canonical	3	10	junction_1	2.86744175568088	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTTCATTGCTTC	4291	False	NA	NA	False	AGTAAA	-29	NA	141648176	141643599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_141643864_141645584_141645692_141646058_141646144_141648047
ENSMUSG00000051469.15_24145325_24153867_1	chr18	-	3166	4	FSM	ENSMUSG00000051469.15	ENSMUST00000066497.12	5732	4	0	2566	0	1657	multi-exon	FALSE	canonical	3	144	junction_3	47.8957200593122	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCTTGGAATTGCCTTAC	NA	False	NA	NA	False	AATAAA	-28	NA	24153867	24145324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153768
ENSMUSG00000051469.15_24146982_24153867_1	chr18	-	1509	4	FSM	ENSMUSG00000051469.15	ENSMUST00000066497.12	5732	4	0	4223	0	0	multi-exon	FALSE	canonical	3	144	junction_3	47.8957200593122	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTGTGAAGTTTATA	NA	False	NA	NA	False	TTTAAA	-24	NA	24153867	24146981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153768
ENSMUSG00000051483.10_93404777_93407232_1	chr16	+	1024	3	FSM	ENSMUSG00000051483.10	ENSMUST00000039659.9	1237	3	52	161	0	0	multi-exon	FALSE	canonical	3	426	junction_1	12.5	4544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACAAATGTTTTTAAGTT	NA	False	NA	15	True	AATAAA	-27	NA	93404776	93407232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_93405143_93405676_93405785_93406682
ENSMUSG00000051483.10_93405120_93407232_1	chr16	+	681	3	FSM	ENSMUSG00000051483.10	ENSMUST00000039659.9	1237	3	395	161	343	0	multi-exon	FALSE	canonical	3	426	junction_1	12.5	1056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACAAATGTTTTTAAGTT	NA	False	NA	15	True	AATAAA	-27	NA	93405119	93407232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_93405143_93405676_93405785_93406682
ENSMUSG00000051506.18_32681504_32692840_1	chr14	-	1079	6	ISM	ENSMUSG00000051506.18	ENSMUST00000130509.10	10158	62	214183	0	52454	0	3prime_fragment	FALSE	canonical	3	12	junction_1	3.37045990927054	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTCTGGTTTCATCTGA	NA	False	NA	0	True	ATTAAA	-37	NA	32692840	32681503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_32681962_32682698_32682811_32686495_32686581_32688320_32688504_32689429_32689610_32692779
ENSMUSG00000051510.14_120519165_120524215_1	chr11	-	1490	3	FSM	ENSMUSG00000051510.14	ENSMUST00000058162.14	4923	3	211	3222	167	668	multi-exon	FALSE	canonical	3	302	junction_2	28	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGCCAAGCTGCGAGC	7569	False	NA	NA	False	TATAAA	-26	NA	120524215	120519164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120520563_120520643_120520708_120524187
ENSMUSG00000051510.14_120519394_120520974_1	chr11	-	1396	3	FSM	ENSMUSG00000051510.14	ENSMUST00000106180.2	732	3	0	-664	0	439	multi-exon	FALSE	canonical	2	7	junction_2	175.5	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGCAGAGTATTTATAAAA	9613	False	NA	NA	False	ATTAAA	-34	NA	120520974	120519393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120520563_120520643_120520708_120520811
ENSMUSG00000051510.14_120519394_120524215_1	chr11	-	1261	3	FSM	ENSMUSG00000051510.14	ENSMUST00000058162.14	4923	3	211	3451	167	439	multi-exon	FALSE	canonical	3	302	junction_2	28	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGCAGAGTATTTATAAAA	7569	False	NA	NA	False	ATTAAA	-34	NA	120524215	120519393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120520563_120520643_120520708_120524187
ENSMUSG00000051518.9_80144816_80148485_1	chr15	-	973	3	NIC	ENSMUSG00000051518.9	novel	838	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	697	junction_2	77.5	8662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCAAGTGTGTGTGTGTG	NA	False	NA	-5	True	AATAAA	-25	NA	80148485	80144815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_80145596_80148183_80148319_80148427
ENSMUSG00000051518.9_80145267_80148485_1	chr15	-	356	4	FSM	ENSMUSG00000051518.9	ENSMUST00000052499.9	838	4	31	451	0	0	multi-exon	FALSE	canonical	3	697	junction_3	66.5181679443043	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGAAGAAGAAGGCTG	NA	False	NA	NA	False	NA	NA	NA	80148485	80145266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_80145332_80145497_80145596_80148183_80148319_80148427
ENSMUSG00000051557.16_155906980_155976183_1	chr4	-	1348	9	NNC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	0	65356	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	117.805387716352	1069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAACAAAACAAAACA	9135	False	NA	NA	False	NA	NA	NA	155976183	155906979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_155907143_155973321_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
ENSMUSG00000051557.16_155906980_155976183_2	chr4	-	1357	9	NNC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	0	65356	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	117.805387716352	1214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAACAAAACAAAACA	9135	False	NA	NA	False	NA	NA	NA	155976183	155906979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_155907143_155973312_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
ENSMUSG00000051557.16_155906980_155976183_3	chr4	-	1475	8	NNC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	0	65356	intron_retention	FALSE	canonical	0	0	junction_1	125.938760628217	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAACAAAACAAAACA	9135	False	NA	NA	False	NA	NA	NA	155976183	155906979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_155907143_155973312_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975873_155976087
ENSMUSG00000051557.16_155954024_155973326_1	chr4	-	2113	17	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	644	18312	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	1277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGCGCAACCGCCGAGAC	NA	False	NA	NA	False	NA	NA	NA	155973326	155954023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
ENSMUSG00000051557.16_155954024_155973560_1	chr4	-	2347	17	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	410	18312	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGCGCAACCGCCGAGAC	NA	False	NA	NA	False	NA	NA	NA	155973560	155954023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
ENSMUSG00000051557.16_155973319_155976183_1	chr4	-	1371	8	NNC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_3	118.182321962677	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGTCTGTTTATTACT	9135	False	NA	NA	False	AATAAA	-14	NA	155976183	155973318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_155973626_155973890_155974054_155974125_155974364_155974955_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
ENSMUSG00000051557.16_155974837_155976183_1	chr4	-	782	5	ISM	ENSMUSG00000051557.16	ENSMUST00000097737.5	1243	8	55	1518	0	0	5prime_fragment	FALSE	canonical	3	293	junction_3	44.5954033505697	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTGTAAGAAGGTGAGCCA	9135	False	NA	NA	False	NA	NA	NA	155976183	155974836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
ENSMUSG00000051579.11_135070830_135072952_1	chrX	-	1111	3	FSM	ENSMUSG00000051579.11	ENSMUST00000060101.10	1250	3	139	0	-2	0	multi-exon	FALSE	canonical	3	703	junction_2	29	5711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTGGTTAAGACTTGGTC	NA	False	NA	NA	False	NA	NA	NA	135072952	135070829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135071799_135072384_135072455_135072880
ENSMUSG00000051579.11_135071073_135072952_1	chrX	-	868	3	FSM	ENSMUSG00000051579.11	ENSMUST00000060101.10	1250	3	139	243	-2	-243	multi-exon	FALSE	canonical	3	703	junction_2	29	1534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGTGGTGTGTTTT	NA	False	NA	-14	True	NA	NA	NA	135072952	135071072	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135071799_135072384_135072455_135072880
ENSMUSG00000051579.11_135071308_135072952_1	chrX	-	633	3	FSM	ENSMUSG00000051579.11	ENSMUST00000060101.10	1250	3	139	478	-2	326	multi-exon	FALSE	canonical	3	703	junction_2	29	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGTTATGTAGTTTCG	NA	False	NA	-13	True	NA	NA	NA	135072952	135071307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135071799_135072384_135072455_135072880
ENSMUSG00000051639.4_6171336_6172506_2	chr17	-	719	2	Genic_Genomic	ENSMUSG00000051639.4	novel	957	1	NA	NA	-67	147	multi-exon	FALSE	non_canonical	0	0	junction_1	0	642	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATCCTAGCTGCCTGGA	NA	False	NA	NA	False	NA	NA	NA	6172506	6171335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_-_6171867_6172318
ENSMUSG00000051705.14_59643753_59657921_1	chr9	-	1572	3	FSM	ENSMUSG00000051705.14	ENSMUST00000213257.2	764	3	-16	-792	0	0	multi-exon	FALSE	canonical	1	1	junction_2	9	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCGGGTGTGTGGTGCA	6429	False	NA	-22	True	AATAAA	-15	NA	59657921	59643752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_59645152_59647222_59647335_59657860
ENSMUSG00000051705.14_59643753_59657921_2	chr9	-	1553	3	FSM	ENSMUSG00000051705.14	ENSMUST00000163586.9	3570	3	0	2017	0	0	multi-exon	FALSE	canonical	3	14	junction_2	2.5	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCGGGTGTGTGGTGCA	6429	False	NA	-22	True	AATAAA	-15	NA	59657921	59643752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_59645152_59647222_59647316_59657860
ENSMUSG00000051730.16_69691906_69701854_1	chr2	-	1708	12	NNC	ENSMUSG00000051730.16	novel	968	7	NA	NA	2540	9636	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1779	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCCCGGCTCTGCTTTCC	3666	False	NA	NA	False	GGGGCT	-45	NA	69701854	69691905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_69692057_69693584_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ENSMUSG00000051730.16_69691906_69701854_2	chr2	-	1752	12	NIC	ENSMUSG00000051730.16	novel	968	7	NA	NA	2540	9636	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCCCGGCTCTGCTTTCC	3666	False	NA	NA	False	GGGGCT	-45	NA	69701854	69691905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_69692084_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ENSMUSG00000051730.16_69691967_69701854_1	chr2	-	1664	12	NIC	ENSMUSG00000051730.16	novel	968	7	NA	NA	2540	9575	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3938	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAAAGATGGGGGCTTTC	3666	False	NA	NA	False	NA	NA	NA	69701854	69691966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ENSMUSG00000051730.16_69701562_69715941_1	chr2	-	963	7	NNC	ENSMUSG00000051730.16	novel	968	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_5	191.145378064853	4351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAACTACTTGTCTCTA	6824	False	NA	-25	True	AATAAA	-14	NA	69715941	69701561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_69701661_69702075_69702126_69704227_69704280_69709445_69709529_69711110_69711326_69711640_69711756_69715592
ENSMUSG00000051735.8_28495442_28498379_1	chr7	+	2065	5	ISM	ENSMUSG00000051735.8	ENSMUST00000209035.2	2898	12	7048	0	-921	0	3prime_fragment	FALSE	canonical	3	40	junction_1	3.11247489949718	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACGAGCAATGGAGGTGC	NA	False	NA	3	True	AATAAA	-13	NA	28495441	28498379	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_28495772_28496077_28496372_28496534_28496667_28496984_28497149_28497234
ENSMUSG00000051768.10_24246626_24267301_1	chr7	+	1494	9	ISM	ENSMUSG00000051768.10	ENSMUST00000063249.9	2155	17	51	5562	0	336	intron_retention	FALSE	canonical	3	337	junction_4	32.1937493933217	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGGTGCTGGACTGTCA	NA	False	NA	NA	False	AATACA	-39	NA	24246625	24267301	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_24246785_24247214_24247308_24259160_24259278_24264960_24265120_24265643_24265719_24265813_24265926_24266282_24266393_24266463_24266570_24266738
ENSMUSG00000051768.10_24246758_24272863_1	chr7	+	1972	17	FSM	ENSMUSG00000051768.10	ENSMUST00000063249.9	2155	17	183	0	0	0	multi-exon	FALSE	canonical	3	337	junction_4	31.1527862919194	849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGTTTCTCTCTTAGGAG	NA	False	NA	7	True	AATAAA	-19	NA	24246757	24272863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_24246785_24247214_24247308_24259160_24259278_24264960_24265120_24265643_24265719_24265813_24265926_24266282_24266393_24266463_24266570_24266738_24266998_24267234_24267352_24269640_24269735_24269873_24270004_24270296_24270352_24270439_24270577_24271633_24271725_24272478_24272555_24272649
ENSMUSG00000051811.15_4754791_4756025_1	chr7	-	436	4	NNC	ENSMUSG00000051811.15	novel	553	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	378.537830195198	1504	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756025	4754790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_4754969_4755102_4755161_4755722_4755849_4755951
ENSMUSG00000051811.15_4754791_4756025_2	chr7	-	473	4	NIC	ENSMUSG00000051811.15	novel	553	4	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_3	362.746008477925	800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756025	4754790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_4754975_4755102_4755161_4755722_4755880_4755951
ENSMUSG00000051811.15_4754791_4756025_4	chr7	-	570	3	FSM	ENSMUSG00000051811.15	ENSMUST00000182173.2	391	3	-24	-155	-3	0	multi-exon	FALSE	canonical	3	803	junction_1	0	7517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756025	4754790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4755161_4755722_4755849_4755951
ENSMUSG00000051811.15_4754791_4756025_5	chr7	-	1047	3	NIC	ENSMUSG00000051811.15	novel	553	4	NA	NA	-3	0	intron_retention	FALSE	canonical	3	648	junction_1	77.5	1362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756025	4754790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_4754975_4755059_4755849_4755951
ENSMUSG00000051811.15_4754791_4756025_6	chr7	-	370	3	NIC	ENSMUSG00000051811.15	novel	490	4	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	322	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756025	4754790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_4754975_4755059_4755172_4755951
ENSMUSG00000051811.15_4754791_4756025_7	chr7	-	1132	2	NIC	ENSMUSG00000051811.15	novel	553	4	NA	NA	-3	0	intron_retention	FALSE	canonical	3	803	junction_1	0	1795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756025	4754790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_4755849_4755951
ENSMUSG00000051811.15_4754791_4756025_8	chr7	-	359	3	NIC	ENSMUSG00000051811.15	novel	553	4	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	26	junction_2	311	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756025	4754790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_4754975_4755059_4755161_4755951
ENSMUSG00000051811.15_4754924_4756025_1	chr7	-	352	4	FSM	ENSMUSG00000051811.15	ENSMUST00000063324.14	553	4	68	133	-3	0	multi-exon	FALSE	canonical	3	648	junction_1	73.0677007226099	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTTGCACTTGAGCGCT	NA	False	NA	NA	False	NA	NA	NA	4756025	4754923	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4754975_4755059_4755161_4755722_4755849_4755951
ENSMUSG00000051950.11_149601695_149664661_1	chr5	+	1086	11	NNC	ENSMUSG00000051950.11	novel	4570	15	NA	NA	0	-9939	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_10	165.154503420282	172	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTACAGAAATGAGTGTTTG	NA	False	NA	NA	False	ATTAAA	-27	NA	149601694	149664661	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_149601845_149619889_149619940_149626743_149626784_149632784_149632895_149648875_149648953_149650218_149650331_149653388_149653526_149656137_149656202_149658834_149658955_149662996_149663067_149664505
ENSMUSG00000051950.11_149601695_149683348_1	chr5	+	1854	15	FSM	ENSMUSG00000051950.11	ENSMUST00000100404.6	4570	15	0	2716	0	-724	multi-exon	FALSE	canonical	3	479	junction_13	51.6933659344471	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCTGTTTTCTCCATTG	NA	False	NA	19	True	AATAAA	-15	NA	149601694	149683348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_149601845_149619889_149619940_149626743_149626784_149632784_149632895_149648875_149648953_149650218_149650331_149653388_149653526_149656137_149656202_149658834_149658955_149662996_149663067_149668890_149669005_149669969_149670070_149673895_149674016_149677529_149677675_149682903
ENSMUSG00000051978.10_14077561_14140301_1	chr8	-	1621	6	NNC	ENSMUSG00000051978.10	novel	1557	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_5	79.7696684210233	1111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATATTTGTGATAAGATT	NA	False	NA	-6	True	AATAAA	-18	NA	14140301	14077560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140176
ENSMUSG00000051978.10_14077894_14140301_1	chr8	-	1288	6	NNC	ENSMUSG00000051978.10	novel	1557	6	NA	NA	0	-333	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_5	79.7696684210233	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGCTGTCATTTGACTC	NA	False	NA	NA	False	NA	NA	NA	14140301	14077893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140176
ENSMUSG00000051978.10_14077894_14140301_2	chr8	-	1224	6	FSM	ENSMUSG00000051978.10	ENSMUST00000110813.5	1557	6	0	333	0	-333	multi-exon	FALSE	canonical	3	204	junction_5	39.1591624016653	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGCTGTCATTTGACTC	NA	False	NA	NA	False	NA	NA	NA	14140301	14077893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140240
ENSMUSG00000051984.14_44528474_44534305_1	chr19	-	450	4	NNC	ENSMUSG00000091471.2	novel	225	2	NA	NA	6965	3687	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	4.96655480858378	54	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTGTGGTTATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	44534305	44528473	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_44528609_44531704_44531829_44532139_44532252_44534226
ENSMUSG00000051989.12_92098184_92109929_1	chr16	+	515	4	NNC	ENSMUSG00000051989.12	novel	517	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	154.540897140171	1566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTCTGCATTCTCTCT	NA	False	NA	26	True	AATAAA	-16	NA	92098183	92109929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_92098240_92102175_92102286_92107688_92107858_92109749
ENSMUSG00000051989.12_92098184_92109929_2	chr16	+	502	4	NNC	ENSMUSG00000051989.12	novel	517	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	150.773560900665	1569	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTCTGCATTCTCTCT	NA	False	NA	26	True	AATAAA	-16	NA	92098183	92109929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_92098232_92102180_92102286_92107688_92107858_92109749
ENSMUSG00000052033.14_170353365_170360631_1	chr2	+	313	4	FSM	ENSMUSG00000052033.14	ENSMUST00000063682.12	935	4	210	412	0	0	multi-exon	FALSE	canonical	3	676	junction_1	80.8469060769936	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCGTCCATCCAGCGGGT	4052	False	NA	NA	False	NA	NA	NA	170353364	170360631	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_170353390_170357658_170357767_170358469_170358611_170360592
ENSMUSG00000052033.14_170353365_170360782_1	chr2	+	464	4	FSM	ENSMUSG00000052033.14	ENSMUST00000063682.12	935	4	210	261	0	0	multi-exon	FALSE	canonical	3	676	junction_1	80.8469060769936	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATTTCCCTTCTCCAAA	4052	False	NA	10	True	AATAAA	-20	NA	170353364	170360782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_170353390_170357658_170357767_170358469_170358611_170360592
ENSMUSG00000052033.14_170353365_170360987_1	chr2	+	653	4	NNC	ENSMUSG00000052033.14	novel	935	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	349.236627835945	2535	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTCTCTATATTATTAT	4052	False	NA	12	True	ATTAAA	-15	NA	170353364	170360987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_170353390_170357658_170357767_170358469_170358595_170360592
ENSMUSG00000052033.14_170353365_170360987_2	chr2	+	656	4	NNC	ENSMUSG00000052033.14	novel	935	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	349.236627835945	6174	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTCTCTATATTATTAT	4052	False	NA	12	True	ATTAAA	-15	NA	170353364	170360987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_170353390_170357658_170357767_170358469_170358611_170360605
ENSMUSG00000052033.14_170353365_170360987_3	chr2	+	660	4	NNC	ENSMUSG00000052033.14	novel	935	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	373.855884295302	3279	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTCTCTATATTATTAT	4052	False	NA	12	True	ATTAAA	-15	NA	170353364	170360987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_170353390_170357658_170357758_170358469_170358611_170360592
ENSMUSG00000052040.11_63541131_63587917_1	chr7	-	618	2	FSM	ENSMUSG00000052040.11	ENSMUST00000063694.10	6396	2	746	5032	746	0	multi-exon	FALSE	canonical	3	56	junction_1	0	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATCTCAAAAAAAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	63587917	63541130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_63541546_63587714
ENSMUSG00000052102.16_38460603_38471996_1	chr18	-	2062	6	NIC	ENSMUSG00000052102.16	novel	2289	7	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	69	junction_1	491.136233646022	924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTTTGTGAATTTTG	NA	False	NA	-22	True	AATAAA	-2	NA	38471996	38460602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_-_38462027_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
ENSMUSG00000052102.16_38470688_38472029_1	chr18	-	657	2	ISM	ENSMUSG00000052102.16	ENSMUST00000235590.2	2085	6	0	10085	0	-801	5prime_fragment	FALSE	canonical	3	1104	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGGTCTGAATGTTAG	NA	False	NA	NA	False	TATAAA	-26	NA	38472029	38470687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_-_38471276_38471960
ENSMUSG00000052105.18_66654961_66669751_1	chr17	-	1051	4	NNC	ENSMUSG00000052105.18	novel	2423	6	NA	NA	11908	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	102.924999662645	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTGAAATTGTAGTACAGT	NA	False	NA	-5	True	AATAAA	-19	NA	66669751	66654960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_66655517_66661117_66661373_66665016_66665185_66669679
ENSMUSG00000052139.19_31855350_31891610_1	chr5	+	902	4	NNC	ENSMUSG00000052139.19	novel	2034	8	NA	NA	0	2818	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_3	369.408837047639	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTGAGTCCCATGAGTTG	5874	False	NA	NA	False	AATAAA	-21	NA	31855349	31891610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_31855422_31859169_31859322_31888310_31888388_31891009
ENSMUSG00000052139.19_31855350_32242306_1	chr5	+	1566	12	FSM	ENSMUSG00000052139.19	ENSMUST00000201352.4	1888	12	322	0	0	0	multi-exon	FALSE	canonical	3	639	junction_9	56.490326824983	1940	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTCCTGAAGGCTTC	5874	False	NA	35	True	AATAAA	-31	NA	31855349	32242306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428_31988504_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
ENSMUSG00000052139.19_31855350_32242306_2	chr5	+	1371	11	NIC	ENSMUSG00000052139.19	novel	1888	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_4	217.028131817053	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTCCTGAAGGCTTC	5874	False	NA	35	True	AATAAA	-31	NA	31855349	32242306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31988428_31988504_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
ENSMUSG00000052139.19_31855350_32242306_3	chr5	+	1412	11	NIC	ENSMUSG00000052139.19	novel	1888	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	219.541704466372	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTCCTGAAGGCTTC	5874	False	NA	35	True	AATAAA	-31	NA	31855349	32242306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428_31988504_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32241924
ENSMUSG00000052139.19_31855350_32242306_4	chr5	+	1561	12	NNC	ENSMUSG00000052139.19	novel	1888	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	209.965404470308	1831	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTCCTGAAGGCTTC	5874	False	NA	35	True	AATAAA	-31	NA	31855349	32242306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977826_31978017_31988428_31988504_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
ENSMUSG00000052139.19_31855350_32242306_5	chr5	+	1560	12	NNC	ENSMUSG00000052139.19	novel	1888	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	208.35518783443	1800	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTCCTGAAGGCTTC	5874	False	NA	35	True	AATAAA	-31	NA	31855349	32242306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428_31988504_32058398_32058509_32158704_32158805_32162059_32162125_32164578_32164662_32214854_32215009_32241924
ENSMUSG00000052146.17_27849396_27854214_1	chr17	-	571	6	NNC	ENSMUSG00000052146.17	novel	887	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2408.53180174147	155055	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCACTTGTGTATGTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	27854214	27849395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_27849481_27850173_27850230_27851259_27851331_27853045_27853218_27853299_27853450_27854177
ENSMUSG00000052146.17_27849396_27854214_2	chr17	-	578	6	FSM	ENSMUSG00000052146.17	ENSMUST00000114882.9	887	6	305	4	0	0	multi-exon	FALSE	canonical	3	4719	junction_5	828.025700084243	191857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCACTTGTGTATGTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	27854214	27849395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853299_27853450_27854177
ENSMUSG00000052146.17_27849439_27854268_1	chr17	-	589	6	FSM	ENSMUSG00000052146.17	ENSMUST00000114882.9	887	6	251	47	-50	0	multi-exon	FALSE	canonical	3	4719	junction_5	828.025700084243	80981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGGAGTTTATGTTGTAT	NA	False	NA	NA	False	NA	NA	NA	27854268	27849438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853299_27853450_27854177
ENSMUSG00000052180.16_34063799_34089218_1	chr13	-	1461	7	NNC	ENSMUSG00000052180.16	novel	1325	7	NA	NA	-65	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_6	337.54291908174	3934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAGAACCGAGTGTTTT	NA	False	NA	-7	True	AATAAA	-19	NA	34089218	34063798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083491_34089090
ENSMUSG00000052180.16_34063799_34089218_2	chr13	-	1385	7	NNC	ENSMUSG00000052180.16	novel	1325	7	NA	NA	-65	0	at_least_one_novel_splicesite	FALSE	canonical	1	13	junction_1	326.803925245025	3737	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAGAACCGAGTGTTTT	NA	False	NA	-7	True	AATAAA	-19	NA	34089218	34063798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_34064316_34064609_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089090
ENSMUSG00000052180.16_34063799_34089218_3	chr13	-	1215	6	NIC	ENSMUSG00000052180.16	novel	1325	7	NA	NA	-65	0	combination_of_known_splicesites	FALSE	canonical	3	94	junction_5	331.741827329627	822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAGAACCGAGTGTTTT	NA	False	NA	-7	True	AATAAA	-19	NA	34089218	34063798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34089090
ENSMUSG00000052214.10_18962308_18980576_1	chr7	+	2100	2	FSM	ENSMUSG00000052214.10	ENSMUST00000063976.9	3366	2	49	1217	0	-1217	multi-exon	FALSE	canonical	3	147	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGCAAAAAGTAAAAAAGACA	3282	False	NA	NA	False	NA	NA	NA	18962307	18980576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_18962510_18978678
ENSMUSG00000052234.3_87754826_87759526_1	chr11	-	1006	4	ISM	ENSMUSG00000052234.3	ENSMUST00000049768.4	2689	13	6836	0	3068	0	3prime_fragment	FALSE	canonical	3	12	junction_2	4.89897948556636	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCCGCTGTCTCTCTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	87759526	87754825	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_87755231_87755520_87755734_87756230_87756469_87759376
ENSMUSG00000052253.7_25985235_25997515_1	chr15	+	967	6	FSM	ENSMUSG00000052253.7	ENSMUST00000061875.8	2802	6	783	1052	783	2	multi-exon	TRUE	canonical	3	450	junction_2	26.9962960422351	994	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCGTATTTGAGCAGTGTT	749	False	NA	17	True	AATAAA	-24	NA	25985234	25997515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_25985270_25986883_25987133_25987246_25987410_25991538_25991652_25996191_25996336_25997252
ENSMUSG00000052291.9_116321071_116417406_1	chr10	+	2859	17	NIC	ENSMUSG00000052291.9	novel	2229	4	NA	NA	-23886	-1748	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAGGCTGCTGGGAGCAAG	6005	False	NA	NA	False	NA	NA	NA	116321070	116417406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116373125_116373184_116384937_116385081_116417357
ENSMUSG00000052291.9_116321071_116417406_2	chr10	+	2801	16	NIC	ENSMUSG00000052291.9	novel	2229	4	NA	NA	-23886	-1748	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAGGCTGCTGGGAGCAAG	6005	False	NA	NA	False	NA	NA	NA	116321070	116417406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385081_116417357
ENSMUSG00000052291.9_116321414_116417406_3	chr10	+	2458	16	NIC	ENSMUSG00000052291.9	novel	2229	4	NA	NA	-23543	-1748	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAGGCTGCTGGGAGCAAG	6348	False	NA	NA	False	NA	NA	NA	116321413	116417406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385081_116417357
ENSMUSG00000052291.9_116321692_116417406_4	chr10	+	2180	16	NIC	ENSMUSG00000052291.9	novel	2229	4	NA	NA	-23265	-1748	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAGGCTGCTGGGAGCAAG	6626	False	NA	NA	False	NA	NA	NA	116321691	116417406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385081_116417357
ENSMUSG00000052293.15_100787617_100792566_1	chr13	+	1256	3	NNC	ENSMUSG00000078941.10	novel	1298	5	NA	NA	130	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	627	1590	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTGGTACTTTGGCAG	NA	False	NA	NA	False	AATAAA	-19	NA	100787616	100792566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_100787755_100790698_100790792_100791541
ENSMUSG00000052293.15_100787702_100792568_1	chr13	+	1173	3	NNC	ENSMUSG00000078941.10	novel	1298	5	NA	NA	-149	1	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	627	1567	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGTACTTTGGCAGTT	NA	False	NA	NA	False	AATAAA	-21	NA	100787701	100792568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_100787755_100790698_100790792_100791541
ENSMUSG00000052293.15_100787870_100792568_1	chr13	+	1195	3	NNC	ENSMUSG00000078941.10	novel	1222	3	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_1	635.5	5254	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGTACTTTGGCAGTT	NA	False	NA	NA	False	AATAAA	-21	NA	100787869	100792568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_100787954_100790707_100790792_100791541
ENSMUSG00000052293.15_100788134_100792568_1	chr13	+	1323	3	FSM	ENSMUSG00000052293.15	ENSMUST00000187792.2	824	3	1	-500	0	0	multi-exon	FALSE	canonical	3	17	junction_1	631	1802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGTACTTTGGCAGTT	NA	False	NA	NA	False	AATAAA	-21	NA	100788133	100792568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_100788337_100790698_100790792_100791541
ENSMUSG00000052298.13_54610160_54678506_1	chr11	-	1196	6	FSM	ENSMUSG00000052298.13	ENSMUST00000064104.13	3069	6	-5	1878	-5	-1878	multi-exon	FALSE	canonical	3	549	junction_4	66.5263857428013	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTTATGTATATTTTGAA	NA	False	NA	NA	False	NA	NA	NA	54678506	54610159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54647231_54647386_54678385
ENSMUSG00000052298.13_54610447_54678506_1	chr11	-	909	6	FSM	ENSMUSG00000052298.13	ENSMUST00000064104.13	3069	6	-5	2165	-5	-2165	multi-exon	FALSE	canonical	3	549	junction_4	66.5263857428013	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTCACCCCTGTGATCT	NA	False	NA	NA	False	TATAAA	-19	NA	54678506	54610446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54647231_54647386_54678385
ENSMUSG00000052301.15_126450757_126461018_1	chr7	+	2073	8	NIC	ENSMUSG00000052301.15	novel	936	10	NA	NA	2788	9141	intron_retention	FALSE	non_canonical	0	0	junction_1	0	668	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTCCACTTCCGGAGAC	2847	False	NA	NA	False	NA	NA	NA	126450756	126461018	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_126452164_126452660_126452753_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876
ENSMUSG00000052301.15_126450757_126461018_2	chr7	+	1981	7	NIC	ENSMUSG00000052301.15	novel	936	10	NA	NA	2788	9141	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1343	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTCCACTTCCGGAGAC	2847	False	NA	NA	False	NA	NA	NA	126450756	126461018	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876
ENSMUSG00000052301.15_126451605_126461018_1	chr7	+	1127	7	NNC	ENSMUSG00000052301.15	novel	2538	11	NA	NA	3636	9141	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	271	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTCCACTTCCGGAGAC	3695	False	NA	NA	False	NA	NA	NA	126451604	126461018	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_126452164_126456397_126456515_126456847_126456960_126457045_126457119_126460411_126460465_126460647_126460719_126460876
ENSMUSG00000052301.15_126451605_126461018_2	chr7	+	1225	8	NIC	ENSMUSG00000052301.15	novel	2538	11	NA	NA	3636	9141	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	490	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTCCACTTCCGGAGAC	3695	False	NA	NA	False	NA	NA	NA	126451604	126461018	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_126452164_126452660_126452753_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876
ENSMUSG00000052301.15_126451605_126461018_3	chr7	+	1212	7	NIC	ENSMUSG00000052301.15	novel	2538	11	NA	NA	3636	9141	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	94	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTCCACTTCCGGAGAC	3695	False	NA	NA	False	NA	NA	NA	126451604	126461018	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460797
ENSMUSG00000052301.15_126451605_126461018_4	chr7	+	1154	7	NIC	ENSMUSG00000052301.15	novel	2538	11	NA	NA	3636	9141	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTCCACTTCCGGAGAC	3695	False	NA	NA	False	NA	NA	NA	126451604	126461018	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460740_126460876
ENSMUSG00000052301.15_126451605_126461018_6	chr7	+	1160	8	NIC	ENSMUSG00000052301.15	novel	2538	11	NA	NA	3636	9141	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	324	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTCCACTTCCGGAGAC	3695	False	NA	NA	False	NA	NA	NA	126451604	126461018	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_126452164_126452660_126452753_126456397_126456515_126456847_126456895_126457045_126457125_126460411_126460465_126460647_126460719_126460876
ENSMUSG00000052301.15_126451605_126461549_1	chr7	+	1500	9	Fusion	ENSMUSG00000052301.15_ENSMUSG00000042606.10	novel	2538	11	NA	NA	3636	-1027	multi-exon	FALSE	non_canonical	0	0	junction_1	0	882	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAAACTACTGTCGCTCGG	3695	False	NA	NA	False	NA	NA	NA	126451604	126461549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr7_+_126452164_126452660_126452753_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876_126461190_126461445
ENSMUSG00000052301.15_126451605_126461549_2	chr7	+	1408	8	Fusion	ENSMUSG00000052301.15_ENSMUSG00000042606.10	novel	2766	7	NA	NA	3636	-1027	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1565	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAAACTACTGTCGCTCGG	3695	False	NA	NA	False	NA	NA	NA	126451604	126461549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr7_+_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876_126461190_126461445
ENSMUSG00000052334.12_41761473_41825778_1	chr14	+	1609	7	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4479	0	intron_retention	TRUE	canonical	3	21	junction_4	63.2262252198845	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	41761472	41825778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_41761595_41761988_41762060_41766111_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
ENSMUSG00000052334.12_41761473_41825778_2	chr14	+	1578	7	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4479	0	intron_retention	FALSE	canonical	3	16	junction_2	69.184937345896	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	41761472	41825778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_41761595_41761988_41762060_41766142_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
ENSMUSG00000052337.16_71808363_71852241_1	chr6	+	2645	14	NIC	ENSMUSG00000052337.16	novel	2299	15	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	21	junction_10	452.789447783038	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTCTATCCCTTTTCAA	NA	False	NA	12	True	AATAAA	-19	NA	71808362	71852241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUSG00000052337.16_71808363_71852241_2	chr6	+	2657	14	NNC	ENSMUSG00000052337.16	novel	2299	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	457.116069058741	1220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTCTATCCCTTTTCAA	NA	False	NA	12	True	AATAAA	-19	NA	71808362	71852241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71845551_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUSG00000052337.16_71840151_71852241_1	chr6	+	1559	5	NNC	ENSMUSG00000052337.16	novel	2518	13	NA	NA	-382	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	638.208821625023	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTCTATCCCTTTTCAA	8704	False	NA	12	True	AATAAA	-19	NA	71840150	71852241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_71840255_71845535_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUSG00000052337.16_71840151_71852241_2	chr6	+	1531	5	ISM	ENSMUSG00000052337.16	ENSMUST00000114151.10	2518	13	31757	0	-382	0	3prime_fragment	FALSE	canonical	3	21	junction_1	629.127322169368	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTCTATCCCTTTTCAA	8704	False	NA	12	True	AATAAA	-19	NA	71840150	71852241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_71840255_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUSG00000052337.16_71840151_71852241_3	chr6	+	1547	5	NNC	ENSMUSG00000052337.16	novel	2518	13	NA	NA	-382	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	638.208821625023	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTCTATCCCTTTTCAA	8704	False	NA	12	True	AATAAA	-19	NA	71840150	71852241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_71840259_71845551_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUSG00000052369.9_97862138_97868156_1	chr15	+	1378	7	NIC	ENSMUSG00000052369.9	novel	1623	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_5	61.4050757945411	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCACTGTCTCTGACTGC	7708	False	NA	11	True	AATAAA	-17	NA	97862137	97868156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_97862217_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97866489_97866544_97867467
ENSMUSG00000052369.9_97862138_97868156_2	chr15	+	1372	8	NIC	ENSMUSG00000052369.9	novel	1623	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	55.5683069266455	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCACTGTCTCTGACTGC	7708	False	NA	11	True	AATAAA	-17	NA	97862137	97868156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_97862161_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
ENSMUSG00000052374.17_12284312_12288660_1	chr13	-	597	4	NNC	ENSMUSG00000052374.17	novel	3013	21	NA	NA	322	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	32.3831231765354	57	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGACAAACTTTATTAAG	3129	False	NA	3	True	AATAAA	-29	NA	12288660	12284311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_12284539_12285663_12285823_12287584_12287651_12288515
ENSMUSG00000052374.17_12284312_12293840_1	chr13	-	1075	7	ISM	ENSMUSG00000052374.17	ENSMUST00000168193.8	2920	22	61765	-9	3593	0	3prime_fragment	FALSE	canonical	3	42	junction_5	11.7473401244707	236	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGACAAACTTTATTAAG	NA	False	NA	3	True	AATAAA	-29	NA	12293840	12284311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_12284539_12285663_12285823_12287584_12287651_12289963_12290111_12291248_12291429_12292284_12292420_12293679
ENSMUSG00000052396.8_98868291_98872374_1	chr7	-	1251	3	ISM	ENSMUSG00000052396.8	ENSMUST00000064231.8	1780	6	15452	0	15427	0	3prime_fragment	FALSE	canonical	3	113	junction_1	1.5	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTCTTTTCTCTCTCC	NA	False	NA	-1	True	AATAAA	-20	NA	98872374	98868290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_98869167_98871459_98871660_98872199
ENSMUSG00000052397.9_7005674_7008442_1	chr17	-	1526	3	ISM	ENSMUSG00000052397.9	ENSMUST00000064234.7	3164	13	41741	234	1778	-234	3prime_fragment	FALSE	canonical	3	975	junction_1	45.5	3300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTCTGATTGCATGGG	NA	False	NA	-1	True	AATAAA	-14	NA	7008442	7005673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_7006867_7007028_7007281_7008361
ENSMUSG00000052397.9_7005674_7050183_1	chr17	-	2930	13	FSM	ENSMUSG00000052397.9	ENSMUST00000064234.7	3164	13	0	234	0	-234	multi-exon	FALSE	canonical	3	786	junction_7	74.9893973987138	4542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTCTGATTGCATGGG	NA	False	NA	-1	True	AATAAA	-14	NA	7050183	7005673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008981_7009752_7009884_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
ENSMUSG00000052397.9_7006008_7008442_1	chr17	-	1192	3	ISM	ENSMUSG00000052397.9	ENSMUST00000064234.7	3164	13	41741	568	1778	-568	3prime_fragment	FALSE	canonical	3	975	junction_1	45.5	900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCATGTAACCGAGACAC	NA	False	NA	-9	True	AATAAA	-16	NA	7008442	7006007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_7006867_7007028_7007281_7008361
ENSMUSG00000052397.9_7006008_7050183_1	chr17	-	2596	13	FSM	ENSMUSG00000052397.9	ENSMUST00000064234.7	3164	13	0	568	0	-568	multi-exon	FALSE	canonical	3	786	junction_7	74.9893973987138	2230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCATGTAACCGAGACAC	NA	False	NA	-9	True	AATAAA	-16	NA	7050183	7006007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008981_7009752_7009884_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
ENSMUSG00000052406.15_26843575_26854336_1	chr2	-	2025	7	NIC	ENSMUSG00000052406.15	novel	2281	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	43	junction_4	59.1629106789042	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTGTGTGGAAGTTCAT	NA	False	NA	-6	True	AATAAA	-14	NA	26854336	26843574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_26844609_26845506_26845582_26846300_26846376_26848490_26848580_26850614_26850753_26852394_26852736_26854063
ENSMUSG00000052419.8_13869799_13871465_1	chr6	-	1060	3	FSM	ENSMUSG00000052419.8	ENSMUST00000139231.2	3177	3	52	2065	0	0	multi-exon	FALSE	canonical	3	64	junction_2	22	924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTATTGTTTTGGTCTGCT	0	True	NA	NA	False	AATACA	-22	NA	13871465	13869798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_13870740_13871054_13871146_13871437
ENSMUSG00000052419.8_13869799_13871465_2	chr6	-	1065	3	NNC	ENSMUSG00000052419.8	novel	1077	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	53.5	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTATTGTTTTGGTCTGCT	0	True	NA	NA	False	AATACA	-22	NA	13871465	13869798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_13870740_13871054_13871146_13871432
ENSMUSG00000052419.8_13869859_13871465_1	chr6	-	1000	3	FSM	ENSMUSG00000052419.8	ENSMUST00000139231.2	3177	3	52	2125	0	0	multi-exon	FALSE	canonical	3	64	junction_2	22	719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATCTTCTCCTTGTGAG	0	True	NA	NA	False	AATAGA	-32	NA	13871465	13869858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_13870740_13871054_13871146_13871437
ENSMUSG00000052419.8_13869859_13871465_2	chr6	-	1005	3	NNC	ENSMUSG00000052419.8	novel	3177	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	53.5	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATCTTCTCCTTGTGAG	0	True	NA	NA	False	AATAGA	-32	NA	13871465	13869858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_13870740_13871054_13871146_13871432
ENSMUSG00000052419.8_13870125_13871465_1	chr6	-	739	3	NNC	ENSMUSG00000052419.8	novel	3177	3	NA	NA	0	-125	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	53.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGCCTCTTGCATTCTG	0	True	NA	-4	True	AGTAAA	-16	NA	13871465	13870124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_13870740_13871054_13871146_13871432
ENSMUSG00000052419.8_13870125_13871465_2	chr6	-	734	3	FSM	ENSMUSG00000052419.8	ENSMUST00000139231.2	3177	3	52	2391	0	-125	multi-exon	FALSE	canonical	3	64	junction_2	22	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGCCTCTTGCATTCTG	0	True	NA	-4	True	AGTAAA	-16	NA	13871465	13870124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_13870740_13871054_13871146_13871437
ENSMUSG00000052423.16_171097909_171104468_1	chr1	+	1955	9	NNC	ENSMUSG00000052423.16	novel	1998	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	46	junction_8	69.4041605381118	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTTGTGATTTCTGCA	NA	False	NA	15	True	AATAAA	-15	NA	171097908	171104468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_171097985_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678_171104391_171104422
ENSMUSG00000052428.11_167136305_167158355_1	chr1	+	1211	7	NNC	ENSMUSG00000052428.11	novel	3966	8	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	197.428186662616	1482	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGTCTCCTGTTCAAAA	NA	False	NA	16	True	AATAAA	-23	NA	167136304	167158355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_167136503_167136874_167136953_167141680_167141736_167143811_167143859_167146830_167146899_167153444_167153590_167157735
ENSMUSG00000052428.11_167136305_167158355_2	chr1	+	1216	7	FSM	ENSMUSG00000052428.11	ENSMUST00000195015.6	1573	7	358	-1	0	1	multi-exon	FALSE	canonical	3	491	junction_3	23.6108496717552	1504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGTCTCCTGTTCAAAA	NA	False	NA	16	True	AATAAA	-23	NA	167136304	167158355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_167136503_167136874_167136953_167141675_167141736_167143811_167143859_167146830_167146899_167153444_167153590_167157735
ENSMUSG00000052446.18_72704924_72724177_1	chr8	+	2774	4	FSM	ENSMUSG00000052446.18	ENSMUST00000145256.8	504	4	10	-2280	0	0	multi-exon	FALSE	canonical	3	61	junction_2	168.256418071413	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	16	True	AATAAA	-18	NA	72704923	72724177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_72705005_72719637_72719835_72719943_72720005_72721742
ENSMUSG00000052446.18_72704924_72724177_2	chr8	+	2643	3	FSM	ENSMUSG00000052446.18	ENSMUST00000136516.9	601	3	13	-2055	0	0	multi-exon	FALSE	canonical	3	96	junction_2	182.5	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	16	True	AATAAA	-18	NA	72704923	72724177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_72705005_72719637_72719765_72721742
ENSMUSG00000052456.10_85744560_85751910_1	chr8	-	1321	7	NNC	ENSMUSG00000052456.10	novel	1256	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	109	junction_5	750.461950327189	5297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTTGTCAGTGGATG	8400	False	NA	-4	True	AATAAA	-14	NA	85751910	85744559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_85744885_85745150_85745349_85745439_85745548_85746150_85746302_85746388_85746603_85750806_85750955_85751733
ENSMUSG00000052456.10_85744560_85751910_2	chr8	-	540	3	NNC	ENSMUSG00000052456.10	novel	1256	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1046.5	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTTGTCAGTGGATG	8400	False	NA	-4	True	AATAAA	-14	NA	85751910	85744559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_85744771_85750802_85750955_85751733
ENSMUSG00000052456.10_85744560_85751910_3	chr8	-	1250	7	NNC	ENSMUSG00000052456.10	novel	1256	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	1	82	junction_6	733.905628962077	5325	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTTGTCAGTGGATG	8400	False	NA	-4	True	AATAAA	-14	NA	85751910	85744559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_85744885_85745150_85745349_85745439_85745548_85746150_85746302_85746388_85746538_85750806_85750949_85751733
ENSMUSG00000052459.14_43905765_43959404_1	chr16	-	3970	15	FSM	ENSMUSG00000052459.14	ENSMUST00000114666.9	4234	15	264	0	-23	0	multi-exon	FALSE	canonical	3	337	junction_14	44.4035299203538	827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCTTTCCCTTTTTATT	NA	False	NA	0	True	AATAAA	-18	NA	43959404	43905764	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959324
ENSMUSG00000052459.14_43906645_43959404_2	chr16	-	3090	15	FSM	ENSMUSG00000052459.14	ENSMUST00000114666.9	4234	15	264	880	-23	-637	multi-exon	FALSE	canonical	3	337	junction_14	44.4035299203538	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAGAAAAGATCAATT	NA	False	NA	NA	False	AAGAAA	-4	NA	43959404	43906644	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959324
ENSMUSG00000052459.14_43907148_43909423_1	chr16	-	887	2	ISM	ENSMUSG00000052459.14	ENSMUST00000063661.13	3896	15	50136	1140	49920	-1140	3prime_fragment	FALSE	canonical	3	471	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCAGGTGGTCAAACTTA	NA	False	NA	NA	False	GATAAA	-41	NA	43909423	43907147	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_43907880_43909268
ENSMUSG00000052459.14_43907148_43959404_1	chr16	-	2587	15	FSM	ENSMUSG00000052459.14	ENSMUST00000114666.9	4234	15	264	1383	-23	-1140	multi-exon	FALSE	canonical	3	337	junction_14	44.4035299203538	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCAGGTGGTCAAACTTA	NA	False	NA	NA	False	GATAAA	-41	NA	43959404	43907147	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959324
ENSMUSG00000052488.8_73214333_73215363_1	chr8	-	951	2	ISM	ENSMUSG00000052488.8	ENSMUST00000079510.6	3713	18	13600	0	6812	0	3prime_fragment	FALSE	canonical	3	623	junction_1	0	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATTTCCTCTAGCTGT	NA	False	NA	-12	True	AATAAA	-10	NA	73215363	73214332	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_73215200_73215279
ENSMUSG00000052566.9_85724779_85729978_1	chr8	+	997	6	NIC	ENSMUSG00000052566.9	novel	2580	22	NA	NA	-341	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	172.989710676676	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCGTTTTTGCCTATCTG	NA	False	NA	18	True	AATAAA	-14	NA	85724778	85729978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_85724921_85727783_85727867_85727949_85728054_85729132_85729244_85729315_85729388_85729493
ENSMUSG00000052584.11_76770254_76777546_1	chr14	-	634	2	ISM	ENSMUSG00000052584.11	ENSMUST00000227076.2	865	5	16752	-2	16386	0	3prime_fragment	FALSE	canonical	3	106	junction_1	0	1459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCATGTGCGAGTTACC	NA	False	NA	-2	True	AATAAA	-18	NA	76777546	76770253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_76770687_76777345
ENSMUSG00000052593.17_21366415_21373608_1	chr12	-	904	6	NIC	ENSMUSG00000052593.17	novel	4423	19	NA	NA	5683	7095	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3980	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCAGGGCTGCGCCGGATG	3	True	NA	NA	False	NA	NA	NA	21373608	21366414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21371334_21371457_21373289
ENSMUSG00000052629.6_78228578_78229272_1	chr7	+	570	2	Genic_Genomic	ENSMUSG00000052629.6	novel	2205	1	NA	NA	0	-1510	multi-exon	FALSE	canonical	3	4	junction_1	0	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGAGCTATTTCCTGAGAA	NA	False	NA	16	True	AATAAA	-23	NA	78228577	78229272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_78228734_78228858
ENSMUSG00000052712.18_29487804_29520499_1	chr17	+	1191	8	FSM	ENSMUSG00000052712.18	ENSMUST00000235114.2	1073	8	-115	-3	0	0	multi-exon	FALSE	canonical	3	42	junction_3	114.986245850075	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGGTTGGTTGCTTAG	353	False	NA	15	True	AATAAA	-16	NA	29487803	29520499	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ENSMUSG00000052712.18_29487804_29520499_2	chr17	+	1402	9	FSM	ENSMUSG00000052712.18	ENSMUST00000234028.2	1270	9	-131	-1	0	0	multi-exon	FALSE	canonical	0	0	junction_6	118.386813032533	1292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGGTTGGTTGCTTAG	353	False	NA	15	True	AATAAA	-16	NA	29487803	29520499	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515536_29515664_29517615_29517740_29520329
ENSMUSG00000052712.18_29487919_29520396_1	chr17	+	1184	9	FSM	ENSMUSG00000052712.18	ENSMUST00000234028.2	1270	9	-16	102	0	0	multi-exon	FALSE	canonical	0	0	junction_6	118.386813032533	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATGGAACCACTCTCTCGG	468	False	NA	-88	True	NA	NA	NA	29487918	29520396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515536_29515664_29517615_29517740_29520329
ENSMUSG00000052724.8_114585904_114610917_1	chr9	+	1022	5	Genic_Genomic	ENSMUSG00000052724.8	novel	965	3	NA	NA	-23264	-408	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5360	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGGTGAAGCTGGGACGG	NA	False	NA	NA	False	NA	NA	NA	114585903	114610917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_114586389_114587872_114587955_114590974_114591074_114592286_114592461_114610735
ENSMUSG00000052724.8_114585904_114610917_2	chr9	+	930	5	Genic_Genomic	ENSMUSG00000052724.8	novel	965	3	NA	NA	-23264	-408	multi-exon	FALSE	non_canonical	0	0	junction_1	0	243	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGGTGAAGCTGGGACGG	NA	False	NA	NA	False	NA	NA	NA	114585903	114610917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_114586297_114587872_114587955_114590974_114591074_114592286_114592461_114610735
ENSMUSG00000052724.8_114585904_114610917_3	chr9	+	894	4	Genic_Genomic	ENSMUSG00000052724.8	novel	965	3	NA	NA	-23264	-408	multi-exon	FALSE	non_canonical	0	0	junction_1	0	238	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGGTGAAGCTGGGACGG	NA	False	NA	NA	False	NA	NA	NA	114585903	114610917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_114586360_114587872_114587955_114592286_114592461_114610735
ENSMUSG00000052724.8_114585904_114610917_4	chr9	+	985	5	Genic_Genomic	ENSMUSG00000052724.8	novel	965	3	NA	NA	-23264	-408	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5177	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGGTGAAGCTGGGACGG	NA	False	NA	NA	False	NA	NA	NA	114585903	114610917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_114586360_114587880_114587955_114590974_114591074_114592286_114592461_114610735
ENSMUSG00000052724.8_114610048_114610900_1	chr9	+	619	2	NNC	ENSMUSG00000052724.8	novel	965	3	NA	NA	880	-425	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	68	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCCCGGGGACCTCTGGC	NA	False	NA	NA	False	NA	NA	NA	114610047	114610900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_114610502_114610735
ENSMUSG00000052727.7_99578158_99581067_1	chr13	-	471	2	ISM	ENSMUSG00000052727.7	ENSMUST00000223725.2	2669	3	3061	2016	-92	0	3prime_fragment	FALSE	canonical	3	49	junction_1	0	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCACAGATCAAGAGGTGG	4598	False	NA	NA	False	NA	NA	NA	99581067	99578157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_99578283_99580721
ENSMUSG00000052738.15_73225635_73253890_1	chr6	+	1238	9	NNC	ENSMUSG00000052738.15	novel	1519	9	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	495.854502349227	6002	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTGTGAAGACTTTTT	2585	False	NA	15	True	AATAAA	-19	NA	73225634	73253890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_73225737_73233153_73233258_73237457_73237575_73240797_73241004_73241212_73241271_73246297_73246382_73247953_73248106_73252183_73252373_73253664
ENSMUSG00000052738.15_73225635_73253890_2	chr6	+	1245	9	FSM	ENSMUSG00000052738.15	ENSMUST00000064740.9	1519	9	270	4	0	3	multi-exon	FALSE	canonical	3	1222	junction_2	134.074081667562	6064	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTGTGAAGACTTTTT	2585	False	NA	15	True	AATAAA	-19	NA	73225634	73253890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_73225737_73233153_73233258_73237457_73237575_73240790_73241004_73241212_73241271_73246297_73246382_73247953_73248106_73252183_73252373_73253664
ENSMUSG00000052748.15_151286909_151304187_1	chr1	-	767	6	ISM	ENSMUSG00000052748.15	ENSMUST00000111883.9	2855	19	0	42794	0	0	5prime_fragment	FALSE	canonical	3	144	junction_1	12.983065893694	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAATAAAGACAGTTC	NA	False	NA	NA	False	AAGAAA	-4	NA	151304187	151286908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
ENSMUSG00000052752.16_24727824_24746820_1	chr17	-	2620	21	NIC	ENSMUSG00000052752.16	novel	2503	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_12	105.422530798686	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746820	24727823	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731929_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738104_24738221_24746739
ENSMUSG00000052763.8_47897537_47909573_1	chr6	+	2674	5	FSM	ENSMUSG00000052763.8	ENSMUST00000009411.9	2801	5	127	0	127	0	multi-exon	FALSE	canonical	3	116	junction_4	25.1445819213603	415	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCACAGGGTGTTTTCTG	NA	False	NA	24	True	AATAAA	-31	NA	47897536	47909573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_47897684_47903440_47903831_47903953_47904081_47905983_47906065_47907644
ENSMUSG00000052776.11_121034782_121045584_1	chr5	-	1436	6	NNC	ENSMUSG00000052776.11	novel	1885	7	NA	NA	0	-463	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	236.219050882862	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121045584	121034781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_121035129_121036381_121036536_121037135_121037369_121039932_121040118_121043658_121043948_121045356
ENSMUSG00000052776.11_121034782_121045584_2	chr5	-	1416	7	NNC	ENSMUSG00000052776.11	novel	1885	7	NA	NA	0	-463	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	253.677890684668	1912	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121045584	121034781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_121035088_121035242_121035270_121036381_121036536_121037135_121037363_121039932_121040118_121043658_121043948_121045356
ENSMUSG00000052776.11_121034782_121045584_3	chr5	-	1464	7	NNC	ENSMUSG00000052776.11	novel	1885	7	NA	NA	0	-463	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	226.213026444839	1757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121045584	121034781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_121035088_121035242_121035312_121036381_121036536_121037135_121037369_121039932_121040118_121043658_121043948_121045356
ENSMUSG00000052776.11_121034782_121045584_4	chr5	-	1422	7	FSM	ENSMUSG00000052776.11	ENSMUST00000080322.8	1885	7	0	463	0	-463	multi-exon	FALSE	canonical	3	208	junction_1	161.447015732372	2208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121045584	121034781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_121035088_121035242_121035270_121036381_121036536_121037135_121037369_121039932_121040118_121043658_121043948_121045356
ENSMUSG00000052794.14_73197776_73204004_1	chr8	+	1490	3	ISM	ENSMUSG00000052794.14	ENSMUST00000121902.2	2373	8	0	10481	0	-8491	5prime_fragment	FALSE	canonical	3	59	junction_1	1.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGTCTGAAAGGTGATGAA	NA	False	NA	NA	False	NA	NA	NA	73197775	73204004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_73197834_73198593_73199315_73203293
ENSMUSG00000052794.14_73197776_73214385_1	chr8	+	2375	8	FSM	ENSMUSG00000052794.14	ENSMUST00000064853.13	2887	8	52	460	0	-100	multi-exon	FALSE	canonical	3	59	junction_1	11.7334338276463	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTCTGCTTGTTTA	NA	False	NA	6	True	AGTAAA	-21	NA	73197775	73214385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_73197834_73198593_73199315_73203293_73203586_73205202_73205277_73208957_73209412_73211816_73211913_73212446_73212614_73213872
ENSMUSG00000052833.10_16054398_16121710_1	chr7	-	1502	10	FSM	ENSMUSG00000052833.10	ENSMUST00000210999.2	1254	10	21	-269	0	-239	multi-exon	FALSE	canonical	3	190	junction_1	915.179615373431	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAATAGTTTTAGAGACACA	NA	False	NA	-13	True	ATTAAA	-23	NA	16121710	16054397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_16054806_16061755_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
ENSMUSG00000052833.10_16054398_16121758_1	chr7	-	1550	10	FSM	ENSMUSG00000052833.10	ENSMUST00000210999.2	1254	10	-27	-269	-27	-239	multi-exon	FALSE	canonical	3	190	junction_1	915.179615373431	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAATAGTTTTAGAGACACA	NA	False	NA	-13	True	ATTAAA	-23	NA	16121758	16054397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_16054806_16061755_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
ENSMUSG00000052833.10_16060975_16121710_1	chr7	-	1866	9	NNC	ENSMUSG00000052833.10	novel	1875	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1024.24837533432	2136	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	-4	True	AATAAA	-17	NA	16121710	16060974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100740_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
ENSMUSG00000052833.10_16060975_16121710_2	chr7	-	1158	10	NNC	ENSMUSG00000052833.10	novel	1875	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	974.506598803267	209	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	-4	True	AATAAA	-17	NA	16121710	16060974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_16061077_16061793_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
ENSMUSG00000052833.10_16060975_16121710_3	chr7	-	1870	9	NNC	ENSMUSG00000052833.10	novel	1875	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1028.99968871472	4189	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	-4	True	AATAAA	-17	NA	16121710	16060974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102438_16102577_16104211_16104386_16112289_16112402_16121565
ENSMUSG00000052833.10_16060975_16121710_4	chr7	-	1794	9	NNC	ENSMUSG00000052833.10	novel	1875	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1012.88449489564	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	-4	True	AATAAA	-17	NA	16121710	16060974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104301_16112285_16112402_16121565
ENSMUSG00000052833.10_16060975_16121710_5	chr7	-	1867	9	NNC	ENSMUSG00000052833.10	novel	1875	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1027.58880394835	2424	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	-4	True	AATAAA	-17	NA	16121710	16060974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112394_16121565
ENSMUSG00000052833.10_16060975_16121710_6	chr7	-	1880	9	NNC	ENSMUSG00000052833.10	novel	1875	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1030.09875133407	2309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	-4	True	AATAAA	-17	NA	16121710	16060974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_16061855_16064532_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
ENSMUSG00000052833.10_16060975_16121710_7	chr7	-	963	7	NNC	ENSMUSG00000052833.10	novel	1875	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1151.36027038552	457	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	-4	True	AATAAA	-17	NA	16121710	16060974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_16061218_16093020_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
ENSMUSG00000052833.10_16060975_16121758_1	chr7	-	1918	9	NNC	ENSMUSG00000052833.10	novel	1875	9	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1028.99968871472	6083	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	-4	True	AATAAA	-17	NA	16121758	16060974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102438_16102577_16104211_16104386_16112289_16112402_16121565
ENSMUSG00000052833.10_16060975_16121758_2	chr7	-	1914	9	NNC	ENSMUSG00000052833.10	novel	1875	9	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1024.24837533432	4113	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	-4	True	AATAAA	-17	NA	16121758	16060974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100740_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
ENSMUSG00000052833.10_16060975_16121758_3	chr7	-	1915	9	NNC	ENSMUSG00000052833.10	novel	1875	9	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1027.58880394835	4430	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	-4	True	AATAAA	-17	NA	16121758	16060974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112394_16121565
ENSMUSG00000052833.10_16060975_16121758_4	chr7	-	1206	10	NNC	ENSMUSG00000052833.10	novel	1875	9	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	974.506598803267	319	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	-4	True	AATAAA	-17	NA	16121758	16060974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_16061077_16061793_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
ENSMUSG00000052906.8_34110781_34131995_1	chr8	-	1641	8	FSM	ENSMUSG00000052906.8	ENSMUST00000095349.6	2808	8	0	1167	0	-1167	multi-exon	FALSE	canonical	3	227	junction_7	19.9335631229219	756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTCTTAAGGTATCTTT	4670	False	NA	0	True	NA	NA	NA	34131995	34110780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_34111729_34113189_34113265_34116351_34116394_34119264_34119403_34123529_34123656_34125316_34125388_34128507_34128631_34131877
ENSMUSG00000052906.8_34111037_34131995_1	chr8	-	1385	8	FSM	ENSMUSG00000052906.8	ENSMUST00000095349.6	2808	8	0	1423	0	-1423	multi-exon	FALSE	canonical	3	227	junction_7	19.9335631229219	537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGAATGTGAACTGTCGT	4670	False	NA	0	True	AGTAAA	-24	NA	34131995	34111036	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_34111729_34113189_34113265_34116351_34116394_34119264_34119403_34123529_34123656_34125316_34125388_34128507_34128631_34131877
ENSMUSG00000052911.10_108367028_108367729_1	chr9	+	532	3	ISM	ENSMUSG00000052911.10	ENSMUST00000065014.10	5629	33	9972	0	952	0	3prime_fragment	FALSE	canonical	3	201	junction_1	9	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTTGTCTGGCCTTTG	NA	False	NA	19	True	AATAAA	-16	NA	108367027	108367729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_108367153_108367244_108367405_108367482
ENSMUSG00000052917.16_55895787_55946785_1	chr16	+	1053	7	FSM	ENSMUSG00000052917.16	ENSMUST00000049128.11	1130	7	-40	117	0	2	multi-exon	FALSE	canonical	3	14	junction_6	9.3407708461347	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGCCTTGCTAGCCCC	NA	False	NA	NA	False	ACTAAA	-19	NA	55895786	55946785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_55895942_55902718_55902772_55909746_55909828_55917702_55917795_55931968_55932167_55944141_55944334_55946503
ENSMUSG00000052917.16_55895787_55959614_1	chr16	+	957	6	FSM	ENSMUSG00000052917.16	ENSMUST00000202799.4	698	6	-51	-208	0	208	multi-exon	FALSE	canonical	3	17	junction_5	9.74884608556315	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTATTTCTTTCTTTAT	NA	False	NA	NA	False	AATAAA	-30	NA	55895786	55959614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_55895942_55902718_55902772_55917702_55917795_55931968_55932167_55944141_55944334_55959347
ENSMUSG00000052917.16_55895787_55959614_2	chr16	+	759	5	NIC	ENSMUSG00000052917.16	novel	3218	8	NA	NA	0	208	combination_of_known_splicesites	FALSE	canonical	3	4	junction_3	12.8913730843537	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTATTTCTTTCTTTAT	NA	False	NA	NA	False	AATAAA	-30	NA	55895786	55959614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_55895942_55902718_55902772_55917702_55917795_55944141_55944334_55959347
ENSMUSG00000052926.17_85684296_85692642_1	chr8	-	851	7	NIC	ENSMUSG00000052926.17	novel	1532	11	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_3	423.006468298325	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	8281	False	NA	-8	True	AATAAA	-14	NA	85692642	85684295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_85684494_85684594_85684719_85686404_85686493_85691759_85691848_85691945_85692073_85692199_85692272_85692488
ENSMUSG00000052926.17_85684296_85692642_2	chr8	-	989	8	FSM	ENSMUSG00000052926.17	ENSMUST00000109738.10	2044	8	-2	1057	-2	0	multi-exon	FALSE	canonical	3	1021	junction_5	82.5459674041917	2657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	8281	False	NA	-8	True	AATAAA	-14	NA	85692642	85684295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
ENSMUSG00000052926.17_85684296_85692705_1	chr8	-	1045	8	NNC	ENSMUSG00000052926.17	novel	1532	11	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	392.969282696316	3369	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	8218	False	NA	-8	True	AATAAA	-14	NA	85692705	85684295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692495
ENSMUSG00000052926.17_85684296_85696210_1	chr8	-	1765	10	FSM	ENSMUSG00000052926.17	ENSMUST00000109736.9	2981	10	159	1057	0	0	multi-exon	FALSE	canonical	3	62	junction_9	446.653979919331	5974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	4713	False	NA	-8	True	AATAAA	-14	NA	85696210	85684295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488_85692917_85694291_85694498_85695914
ENSMUSG00000052926.17_85696323_85727469_1	chr8	-	926	7	NNC	ENSMUSG00000052926.17	novel	2981	10	NA	NA	-31073	-3465	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	35478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGAGCCCTAGGCCGGAG	NA	False	NA	NA	False	NA	NA	NA	85727469	85696322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628_85700943_85727439
ENSMUSG00000052962.4_71792092_71800752_1	chr6	-	1568	4	FSM	ENSMUSG00000052962.4	ENSMUST00000065103.4	3721	4	42	2111	-5	1055	multi-exon	FALSE	canonical	3	1437	junction_1	9.53356643071673	7197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTTCTACTTTACTTT	NA	False	NA	-1	True	AATAAA	-16	NA	71800752	71792091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_71793272_71794588_71794734_71795652_71795843_71800699
ENSMUSG00000052962.4_71792704_71800752_1	chr6	-	956	4	FSM	ENSMUSG00000052962.4	ENSMUST00000065103.4	3721	4	42	2723	-5	443	multi-exon	FALSE	canonical	3	1437	junction_1	9.53356643071673	7080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACCTCCTCACTGTCTCC	NA	False	NA	-10	True	AATAAA	-15	NA	71800752	71792703	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_71793272_71794588_71794734_71795652_71795843_71800699
ENSMUSG00000052962.4_71792919_71800752_1	chr6	-	744	4	NNC	ENSMUSG00000052962.4	novel	3721	4	NA	NA	-5	228	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	680.971365036739	6006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAAATTTATTGTGCATTA	NA	False	NA	-25	True	ATTAAA	-30	NA	71800752	71792918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_71793272_71794588_71794732_71795647_71795843_71800699
ENSMUSG00000052962.4_71792919_71800752_2	chr6	-	730	4	NNC	ENSMUSG00000052962.4	novel	3721	4	NA	NA	-5	228	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	680.971365036739	554	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAAATTTATTGTGCATTA	NA	False	NA	-25	True	ATTAAA	-30	NA	71800752	71792918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_71793272_71794588_71794734_71795663_71795843_71800699
ENSMUSG00000052997.16_33840113_33868000_1	chr7	-	2569	17	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	521.993111634387	2344	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTGCCCTAGTGGGTTT	NA	False	NA	0	True	AATAAA	-27	NA	33868000	33840112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855400_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
ENSMUSG00000052997.16_33840113_33868000_2	chr7	-	2573	17	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	515.521243348662	2423	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTGCCCTAGTGGGTTT	NA	False	NA	0	True	AATAAA	-27	NA	33868000	33840112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855315_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
ENSMUSG00000052997.16_33840113_33868000_3	chr7	-	2565	17	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	522.181825971567	2167	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTGCCCTAGTGGGTTT	NA	False	NA	0	True	AATAAA	-27	NA	33868000	33840112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_33840892_33842162_33842300_33843914_33844007_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
ENSMUSG00000052997.16_33840113_33868000_4	chr7	-	2629	18	NIC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	585.006840524286	1057	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTGCCCTAGTGGGTTT	NA	False	NA	0	True	AATAAA	-27	NA	33868000	33840112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_33840892_33841227_33841278_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
ENSMUSG00000052997.16_33840113_33868000_5	chr7	-	2573	17	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	517.710490857342	2001	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTGCCCTAGTGGGTTT	NA	False	NA	0	True	AATAAA	-27	NA	33868000	33840112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_33840886_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
ENSMUSG00000052997.16_33863500_33868000_1	chr7	-	439	4	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	0	-1168	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	745.88932750703	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTATGTGAGCCCCGAGT	NA	False	NA	NA	False	ATTAAA	-22	NA	33868000	33863499	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_33863554_33863782_33863881_33864826_33864911_33867797
ENSMUSG00000053012.18_71248685_71261624_1	chr6	+	984	3	FSM	ENSMUSG00000053012.18	ENSMUST00000204436.3	1687	3	24	679	0	400	multi-exon	FALSE	canonical	3	170	junction_2	14.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGAGATGTATCATCTAAG	NA	False	NA	NA	False	NA	NA	NA	71248684	71261624	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_71248825_71259134_71259302_71260947
ENSMUSG00000053040.14_66726202_66741953_1	chr9	-	1224	6	FSM	ENSMUSG00000053040.14	ENSMUST00000169282.8	5205	6	55	3926	-23	364	multi-exon	FALSE	canonical	2	9	junction_1	3.03315017762062	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCGTAGCCCTTGTCTTT	NA	False	NA	-1	True	AGTAAA	-17	NA	66741953	66726201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_66726744_66729515_66729644_66735018_66735142_66735954_66736029_66740440_66740612_66741767
ENSMUSG00000053062.17_84571011_84606874_1	chr16	+	1251	4	FSM	ENSMUSG00000053062.17	ENSMUST00000098407.3	1998	4	-263	1010	0	-1010	multi-exon	TRUE	canonical	3	4189	junction_2	31.1555238547945	1453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTTGTGTGGTCATATC	NA	False	NA	11	True	ATTAAA	-5	NA	84571010	84606874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231
ENSMUSG00000053062.17_84571011_84619774_1	chr16	+	1312	9	NIC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_7	1349.13685369572	10235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTACACTTGCAAAGTG	NA	False	NA	-10	True	ATTAAA	-17	NA	84571010	84619774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613262_84618147_84618191_84619674
ENSMUSG00000053062.17_84571166_84606874_1	chr16	+	1096	4	FSM	ENSMUSG00000053062.17	ENSMUST00000098407.3	1998	4	-108	1010	-108	-1010	multi-exon	FALSE	canonical	3	4189	junction_2	31.1555238547945	1136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTTGTGTGGTCATATC	NA	False	NA	11	True	ATTAAA	-5	NA	84571165	84606874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231
ENSMUSG00000053062.17_84571166_84619774_1	chr16	+	1157	9	NIC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-108	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_7	1349.13685369572	7409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTACACTTGCAAAGTG	NA	False	NA	-10	True	ATTAAA	-17	NA	84571165	84619774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613262_84618147_84618191_84619674
ENSMUSG00000053062.17_84571166_84619774_2	chr16	+	1170	9	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-108	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1361.98577452189	3707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTACACTTGCAAAGTG	NA	False	NA	-10	True	ATTAAA	-17	NA	84571165	84619774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613275_84618147_84618191_84619674
ENSMUSG00000053062.17_84571166_84619918_1	chr16	+	1314	9	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-108	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1361.98577452189	7565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAATGTCTGGTAATATT	NA	False	NA	32	True	ACTAAA	-32	NA	84571165	84619918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613275_84618147_84618191_84619674
ENSMUSG00000053062.17_84571166_84619918_2	chr16	+	1301	9	NIC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-108	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_7	1349.13685369572	11472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAATGTCTGGTAATATT	NA	False	NA	32	True	ACTAAA	-32	NA	84571165	84619918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613262_84618147_84618191_84619674
ENSMUSG00000053070.6_8021466_8042871_1	chr9	-	1846	7	FSM	ENSMUSG00000053070.6	ENSMUST00000065291.2	1592	7	-47	-207	-47	207	multi-exon	FALSE	canonical	2	5	junction_1	2.38047614284762	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTAAATTCTTATTATATA	-38	True	NA	NA	False	TTTAAA	-6	NA	8042871	8021465	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_8022546_8023900_8023968_8025962_8026136_8027101_8027269_8037460_8037537_8042409_8042492_8042670
ENSMUSG00000053080.11_7403266_7460637_1	chr19	+	2832	7	NIC	ENSMUSG00000053080.11	novel	4989	5	NA	NA	4873	57368	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2511	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAGCCTGGACGCGCG	NA	False	NA	NA	False	NA	NA	NA	7403265	7460637	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_7405241_7407115_7407175_7408350_7408398_7409330_7409401_7409816_7409956_7412295_7412504_7460303
ENSMUSG00000053111.14_133391214_133482568_1	chr7	+	1274	11	NIC	ENSMUSG00000053111.14	novel	515	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_8	2.00249843945008	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTTCATATGTGGTCTC	NA	False	NA	NA	False	AATACA	-14	NA	133391213	133482568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_133391287_133454894_133455073_133463831_133463957_133469846_133469929_133471006_133471082_133471750_133471817_133478476_133478643_133481607_133481752_133482000_133482079_133482172_133482218_133482326
ENSMUSG00000053111.14_133391214_133483261_1	chr7	+	1967	11	NIC	ENSMUSG00000053111.14	novel	515	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_8	2.00249843945008	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACAGGAGTGGACTCTTA	NA	False	NA	NA	False	AATAAA	-16	NA	133391213	133483261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_133391287_133454894_133455073_133463831_133463957_133469846_133469929_133471006_133471082_133471750_133471817_133478476_133478643_133481607_133481752_133482000_133482079_133482172_133482218_133482326
ENSMUSG00000053119.12_71520901_71557153_1	chr6	+	1124	6	FSM	ENSMUSG00000053119.12	ENSMUST00000059462.12	2654	6	120	1410	0	350	multi-exon	FALSE	canonical	3	336	junction_5	32.5490399243972	2097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCATTGTAAATGTCAC	NA	False	NA	9	True	AATAAA	-18	NA	71520900	71557153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_71521018_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624
ENSMUSG00000053119.12_71520901_71558563_1	chr6	+	2534	6	FSM	ENSMUSG00000053119.12	ENSMUST00000059462.12	2654	6	120	0	0	0	multi-exon	FALSE	canonical	3	336	junction_5	32.5490399243972	2433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTATATTATGCCTTTG	NA	False	NA	23	True	NA	NA	NA	71520900	71558563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_71521018_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624
ENSMUSG00000053119.12_71521337_71557153_1	chr6	+	1100	6	NIC	ENSMUSG00000053119.12	novel	347	4	NA	NA	0	350	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	151.398282685108	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCATTGTAAATGTCAC	NA	False	NA	9	True	AATAAA	-18	NA	71521336	71557153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_71521430_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624
ENSMUSG00000053153.15_69866130_69884509_1	chr1	+	585	4	NNC	ENSMUSG00000053153.15	novel	1338	13	NA	NA	0	-28410	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	2.35702260395516	33	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCCTCTTAATTTATCA	NA	False	NA	NA	False	AATAAA	-23	NA	69866129	69884509	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_69866281_69882127_69882175_69883437_69883534_69884218
ENSMUSG00000053158.11_80027506_80029793_2	chr7	-	950	5	ISM	ENSMUSG00000053158.11	ENSMUST00000206728.2	2707	18	7374	-15	391	0	3prime_fragment	FALSE	canonical	2	10	junction_1	2.77263412660235	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATTGACATGTGTGCTC	NA	False	NA	-4	True	AATAAA	-20	NA	80029793	80027505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_80027823_80028289_80028413_80028525_80028684_80029358_80029483_80029565
ENSMUSG00000053192.10_95126446_95135544_1	chr3	-	1479	2	FSM	ENSMUSG00000053192.10	ENSMUST00000065482.6	1923	2	444	0	444	0	multi-exon	FALSE	canonical	3	62	junction_1	0	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGGGCTTAGTTTTTTC	6824	False	NA	0	True	AATAAA	-16	NA	95135544	95126445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95127775_95135394
ENSMUSG00000053205.10_45614908_45626250_1	chr14	+	1492	6	NNC	ENSMUSG00000053205.10	novel	12974	11	NA	NA	5944	3286	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	974	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGTCAAAGCGCCGCCGC	NA	False	NA	NA	False	NA	NA	NA	45614907	45626250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_45615944_45618393_45618456_45619012_45619141_45620850_45620903_45622037_45622206_45626204
ENSMUSG00000053205.10_45614908_45626250_2	chr14	+	1495	6	NNC	ENSMUSG00000053205.10	novel	12974	11	NA	NA	5944	3286	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	758	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGTCAAAGCGCCGCCGC	NA	False	NA	NA	False	NA	NA	NA	45614907	45626250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_45615944_45618393_45618456_45619020_45619141_45620850_45620914_45622037_45622206_45626204
ENSMUSG00000053205.10_45615621_45626250_2	chr14	+	779	6	NNC	ENSMUSG00000053205.10	novel	12974	11	NA	NA	6657	3286	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	121	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGTCAAAGCGCCGCCGC	NA	False	NA	NA	False	NA	NA	NA	45615620	45626250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_45615944_45618393_45618456_45619012_45619141_45620850_45620903_45622037_45622206_45626204
ENSMUSG00000053219.16_22034485_22059682_1	chr10	+	1330	8	NIC	ENSMUSG00000053219.16	novel	1579	9	NA	NA	17	-131	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	37.3625371685793	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAACACATTTTAAAATG	NA	False	NA	NA	False	AATAAA	-24	NA	22034484	22059682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_22034618_22049079_22049150_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
ENSMUSG00000053219.16_22034485_22059816_2	chr10	+	1464	8	NIC	ENSMUSG00000053219.16	novel	1579	9	NA	NA	17	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	37.3625371685793	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	5	True	AATAAA	-15	NA	22034484	22059816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_22034618_22049079_22049150_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
ENSMUSG00000053253.17_105496253_105546305_1	chr14	+	1860	8	FSM	ENSMUSG00000053253.17	ENSMUST00000181969.8	2532	8	245	427	0	0	multi-exon	TRUE	canonical	3	271	junction_7	54.1807255433901	829	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGCCTCGTTTAGTGATT	NA	False	NA	6	True	AATAAA	-16	NA	105496252	105546305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545319
ENSMUSG00000053253.17_105496253_105546305_2	chr14	+	1630	8	FSM	ENSMUSG00000053253.17	ENSMUST00000138283.2	1695	8	65	0	0	0	multi-exon	FALSE	canonical	3	137	junction_7	99.9552961302691	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGCCTCGTTTAGTGATT	NA	False	NA	6	True	AATAAA	-16	NA	105496252	105546305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545549
ENSMUSG00000053253.17_105496253_105546732_1	chr14	+	2287	8	FSM	ENSMUSG00000053253.17	ENSMUST00000181969.8	2532	8	245	0	0	0	multi-exon	FALSE	canonical	3	271	junction_7	54.1807255433901	1105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGTATTTCTTGTATT	NA	False	NA	10	True	AATAAA	-17	NA	105496252	105546732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545319
ENSMUSG00000053286.12_151304399_151333912_1	chr1	+	2471	15	NIC	ENSMUSG00000053286.12	novel	2749	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	47.2939138337512	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	15	True	AATAAA	-16	NA	151304398	151333912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_151304682_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
ENSMUSG00000053289.9_53009935_53068566_1	chr9	-	918	4	ISM	ENSMUSG00000053289.9	ENSMUST00000065630.8	3128	18	90787	0	90787	0	3prime_fragment	FALSE	canonical	3	364	junction_1	10.2306728354819	2585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTGTTTTTATTGTAT	NA	False	NA	-3	True	AATAAA	-17	NA	53068566	53009934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_53010563_53028452_53028590_53060802_53060860_53068470
ENSMUSG00000053293.10_135398807_135404997_1	chr5	-	1588	10	NIC	ENSMUSG00000053293.10	novel	5580	13	NA	NA	18403	6188	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	904	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGCAAAACTCGGGCTGGC	NA	False	NA	NA	False	NA	NA	NA	135404997	135398806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
ENSMUSG00000053293.10_135398807_135404997_3	chr5	-	1583	10	NNC	ENSMUSG00000053293.10	novel	5580	13	NA	NA	18403	6188	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	323	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGCAAAACTCGGGCTGGC	NA	False	NA	NA	False	NA	NA	NA	135404997	135398806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402807_135402947_135403042_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
ENSMUSG00000053293.10_135398807_135404997_4	chr5	-	1581	10	NNC	ENSMUSG00000053293.10	novel	5580	13	NA	NA	18403	6188	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	233	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGCAAAACTCGGGCTGGC	NA	False	NA	NA	False	NA	NA	NA	135404997	135398806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_135398931_135399044_135399168_135400101_135400270_135400351_135400461_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
ENSMUSG00000053293.10_135398807_135405659_1	chr5	-	2250	10	NIC	ENSMUSG00000053293.10	novel	5580	13	NA	NA	17741	6188	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1047	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGCAAAACTCGGGCTGGC	NA	False	NA	NA	False	NA	NA	NA	135405659	135398806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
ENSMUSG00000053329.8_77997900_78005608_4	chr10	-	1364	7	NNC	ENSMUSG00000053329.8	novel	1378	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	15.0443787951957	935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATGTCTCAGGCCTTGTG	4139	False	NA	-2	True	AATAAA	-29	NA	78005608	77997899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_77998535_77999218_77999388_78000671_78000765_78003228_78003349_78004642_78004757_78005206_78005260_78005428
ENSMUSG00000053332.14_160862737_160866109_1	chr1	+	446	10	NNC	ENSMUSG00000053332.14	novel	557	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1774.59954794189	72433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862736	160866109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865059_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUSG00000053332.14_160862737_160866109_2	chr1	+	419	9	NNC	ENSMUSG00000053332.14	novel	557	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2269.71826445486	8105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862736	160866109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864389_160864427_160865059_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUSG00000053332.14_160862737_160866109_3	chr1	+	486	11	NNC	ENSMUSG00000053332.14	novel	502	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1939.64689827814	47457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862736	160866109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864693_160864735_160865060_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUSG00000053332.14_160862737_160866109_4	chr1	+	448	9	NNC	ENSMUSG00000053332.14	novel	904	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1869.76893208091	18639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862736	160866109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865504_160865608_160865794_160865843_160866026
ENSMUSG00000053332.14_160862737_160866109_5	chr1	+	431	9	NNC	ENSMUSG00000053332.14	novel	793	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2347.09346852655	10254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862736	160866109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863827_160864389_160864427_160865059_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUSG00000053332.14_160862737_160866109_6	chr1	+	459	10	NNC	ENSMUSG00000053332.14	novel	557	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	48	junction_6	1760.78517839186	81298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862736	160866109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864451_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUSG00000053332.14_160862737_160866109_7	chr1	+	280	6	NNC	ENSMUSG00000053332.14	novel	346	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2208.92040599022	1998	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862736	160866109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160865795_160865843_160866026
ENSMUSG00000053332.14_160862737_160866109_8	chr1	+	894	10	NIC	ENSMUSG00000053332.14	novel	502	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	3085	junction_6	967.274955483792	4119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862736	160866109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUSG00000053358.3_120633983_120675932_1	chr7	-	1382	5	Genic_Genomic	ENSMUSG00000053358.3	novel	1845	1	NA	NA	-41613	-1508	multi-exon	FALSE	non_canonical	0	0	junction_1	0	116	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAGGAGGAGGAGCCGCC	NA	False	NA	NA	False	NA	NA	NA	120675932	120633982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_120634199_120647060_120647252_120651309_120651520_120656437_120656623_120675352
ENSMUSG00000053358.3_120633983_120676058_1	chr7	-	1508	5	Genic_Genomic	ENSMUSG00000053358.3	novel	1845	1	NA	NA	-41739	-1508	multi-exon	FALSE	non_canonical	0	0	junction_1	0	405	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAGGAGGAGGAGCCGCC	NA	False	NA	NA	False	NA	NA	NA	120676058	120633982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_120634199_120647060_120647252_120651309_120651520_120656437_120656623_120675352
ENSMUSG00000053367.16_6262287_6284860_1	chr7	+	784	9	NNC	ENSMUSG00000053367.16	novel	957	16	NA	NA	675	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	29.8326059036082	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGATTCAGTGCGTATT	1964	False	NA	8	True	AATAAA	-23	NA	6262286	6284860	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_6262352_6266905_6266933_6269287_6269345_6269828_6269856_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
ENSMUSG00000053367.16_6263282_6284860_1	chr7	+	904	6	NNC	ENSMUSG00000053367.16	novel	684	11	NA	NA	-253	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	30.4854063446758	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGATTCAGTGCGTATT	2959	False	NA	8	True	AATAAA	-23	NA	6263281	6284860	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_6263544_6266905_6266967_6277345_6277373_6280418_6280541_6282412_6282451_6284466
ENSMUSG00000053367.16_6263282_6284860_2	chr7	+	979	8	NNC	ENSMUSG00000053367.16	novel	957	16	NA	NA	-253	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	27.1473680462165	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGATTCAGTGCGTATT	2959	False	NA	8	True	AATAAA	-23	NA	6263281	6284860	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_6263544_6266905_6266933_6269287_6269370_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
ENSMUSG00000053367.16_6263339_6284860_1	chr7	+	924	9	NNC	ENSMUSG00000053367.16	novel	957	16	NA	NA	-196	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	26.4952825989835	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGATTCAGTGCGTATT	3016	False	NA	8	True	AATAAA	-23	NA	6263338	6284860	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_6263544_6266905_6266933_6269287_6269345_6269828_6269856_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
ENSMUSG00000053367.16_6263339_6284860_2	chr7	+	817	6	NNC	ENSMUSG00000053367.16	novel	684	11	NA	NA	-196	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	31.6189816407803	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGATTCAGTGCGTATT	3016	False	NA	8	True	AATAAA	-23	NA	6263338	6284860	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_6263548_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
ENSMUSG00000053388.11_135380765_135396859_1	chr5	+	1970	7	NNC	ENSMUSG00000053388.11	novel	1803	6	NA	NA	-1384	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	2.86744175568088	95	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTGCTTCCCAACTTG	NA	False	NA	NA	False	AATAAA	-4	NA	135380764	135396859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_135380916_135382136_135382549_135387708_135387805_135392581_135392813_135392903_135392927_135395394_135395520_135395927
ENSMUSG00000053398.12_98220486_98241902_1	chr3	-	1525	11	ISM	ENSMUSG00000053398.12	ENSMUST00000065793.12	1893	12	5404	0	-1016	0	3prime_fragment	FALSE	canonical	3	1070	junction_1	251.962794872576	932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	False	NA	-2	True	AGTAAA	-16	NA	98241902	98220485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822
ENSMUSG00000053398.12_98220486_98247306_1	chr3	-	1885	12	NNC	ENSMUSG00000053398.12	novel	1893	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	540.249743289126	6890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	False	NA	-2	True	AGTAAA	-16	NA	98247306	98220485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223843_98226931_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
ENSMUSG00000053442.5_66873440_66994931_1	chr6	-	791	5	NIC	ENSMUSG00000053442.5	novel	984	2	NA	NA	-121426	-1802	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCCGGGACCGCCCGACC	NA	False	NA	NA	False	NA	NA	NA	66994931	66873439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_66873512_66891436_66891495_66920808_66920867_66992708_66992828_66994447
ENSMUSG00000053442.5_66873440_66994931_2	chr6	-	723	4	NNC	ENSMUSG00000053442.5	novel	984	2	NA	NA	-121426	-1802	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	119	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCCGGGACCGCCCGACC	NA	False	NA	NA	False	NA	NA	NA	66994931	66873439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_66873512_66891436_66891495_66992708_66992828_66994457
ENSMUSG00000053442.5_66873440_66994931_3	chr6	-	774	5	NIC	ENSMUSG00000053442.5	novel	984	2	NA	NA	-121426	-1802	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	86	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCCGGGACCGCCCGACC	NA	False	NA	NA	False	NA	NA	NA	66994931	66873439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_66873500_66891436_66891495_66920808_66920862_66992708_66992828_66994447
ENSMUSG00000053453.10_8508486_8520749_1	chr14	+	925	8	NNC	ENSMUSG00000053453.10	novel	937	8	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	255.654901324869	3313	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508485	8520749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_8508579_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519407_8519465_8519561_8519632_8520435
ENSMUSG00000053453.10_8508551_8520749_1	chr14	+	921	9	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_2	284.258245263	655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508550	8520749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_8508579_8512131_8512210_8515106_8515198_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053453.10_8508551_8520749_2	chr14	+	885	8	NNC	ENSMUSG00000053453.10	novel	951	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	243.518678829316	1067	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508550	8520749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_8508594_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053453.10_8508551_8520749_3	chr14	+	1015	9	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	278.184712691046	986	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508550	8520749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_8508579_8512131_8512304_8515106_8515198_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053453.10_8508551_8520749_4	chr14	+	864	8	NNC	ENSMUSG00000053453.10	novel	951	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	244.554071480217	985	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508550	8520749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_8508579_8515112_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053453.10_8508772_8520749_1	chr14	+	1138	9	NIC	ENSMUSG00000053453.10	novel	707	6	NA	NA	169	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	286.731581797332	1286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508771	8520749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_8508896_8512131_8512304_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053453.10_8508786_8520749_1	chr14	+	952	8	NIC	ENSMUSG00000053453.10	novel	707	6	NA	NA	183	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	230.414976128918	823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508785	8520749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_8508896_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000053453.10_8516234_8520749_1	chr14	+	707	6	NNC	ENSMUSG00000053453.10	novel	1918	7	NA	NA	1094	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	278.412212375822	88	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8516233	8520749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_8516353_8516600_8516688_8518499_8518558_8519405_8519465_8519561_8519632_8520435
ENSMUSG00000053483.16_171109519_171115535_1	chr1	-	2130	12	NIC	ENSMUSG00000053483.16	novel	2219	13	NA	NA	-3	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_3	156.020077114485	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCATGTTTGTATTTGTG	NA	False	NA	NA	False	AATAAA	-20	NA	171115535	171109518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113922_171114544_171115334
ENSMUSG00000053483.16_171109519_171115535_2	chr1	-	1929	13	NIC	ENSMUSG00000053483.16	novel	2219	13	NA	NA	-3	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_3	150.066721272017	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCATGTTTGTATTTGTG	NA	False	NA	NA	False	AATAAA	-20	NA	171115535	171109518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113114_171113175_171114183_171114544_171115334
ENSMUSG00000053483.16_171113778_171115535_1	chr1	-	967	2	FSM	ENSMUSG00000053483.16	ENSMUST00000153164.2	2706	2	-3	1742	-3	-1273	multi-exon	FALSE	canonical	3	442	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTTCTAGATCTTATTTT	NA	False	NA	NA	False	NA	NA	NA	171115535	171113777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171114544_171115334
ENSMUSG00000053510.13_108917319_108918358_1	chr4	+	380	3	ISM	ENSMUSG00000053510.13	ENSMUST00000150784.8	1958	16	19920	314	1131	0	3prime_fragment	FALSE	canonical	3	655	junction_1	2	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAAGACGTGTGTGCAT	NA	False	NA	39	True	AATAAA	-31	NA	108917318	108918358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_108917383_108917965_108918056_108918132
ENSMUSG00000053510.13_108918852_108975219_1	chr4	+	2585	20	NIC	ENSMUSG00000053510.13	novel	4179	29	NA	NA	2664	56245	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	396	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCGCCCTCCCCCGCCCTC	NA	False	NA	NA	False	NA	NA	NA	108918851	108975219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
ENSMUSG00000053510.13_108918852_109059433_1	chr4	+	2796	23	NIC	ENSMUSG00000053510.13	novel	4179	29	NA	NA	2664	140459	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	414	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACGGCCTGACGTCAGTC	NA	False	NA	NA	False	NA	NA	NA	108918851	109059433	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
ENSMUSG00000053553.12_139346090_139446269_1	chr5	-	845	5	FSM	ENSMUSG00000053553.12	ENSMUST00000066052.12	1429	5	-12	596	-3	-596	multi-exon	FALSE	canonical	3	675	junction_4	25.951878544722	755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTCTACTTTTTCTACC	NA	False	NA	NA	False	NA	NA	NA	139446269	139346089	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_139346486_139347061_139347144_139349727_139349919_139441171_139441302_139446223
ENSMUSG00000053559.14_100519243_100533381_1	chr15	-	884	3	FSM	ENSMUSG00000053559.14	ENSMUST00000229307.2	527	3	0	-357	0	0	multi-exon	FALSE	canonical	3	21	junction_2	362	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTCATTTTCAAGAACT	NA	False	NA	-7	True	ATTAAA	-14	NA	100533381	100519242	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_100519908_100520509_100520591_100533243
ENSMUSG00000053559.14_100519243_100534651_1	chr15	-	837	4	FSM	ENSMUSG00000053559.14	ENSMUST00000172334.9	920	4	170	-87	-79	0	multi-exon	FALSE	canonical	3	417	junction_3	158.779371736032	703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTCATTTTCAAGAACT	NA	False	NA	-7	True	ATTAAA	-14	NA	100534651	100519242	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_100519908_100520509_100520591_100534067_100534137_100534629
ENSMUSG00000053565.11_28670798_28681230_1	chr7	-	889	8	NIC	ENSMUSG00000053565.11	novel	774	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_6	1203.94528318274	18407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTCTCTTGCCTGT	NA	False	NA	-5	True	AATAAA	-16	NA	28681230	28670797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679743_28679968_28681098
ENSMUSG00000053600.9_33184788_33197744_1	chr17	+	1913	4	FSM	ENSMUSG00000053600.9	ENSMUST00000039132.9	2376	4	0	463	0	-463	multi-exon	FALSE	canonical	3	72	junction_1	5.18544972870135	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAACGAAGCCTGTGCTGT	NA	False	NA	NA	False	AGTAAA	-19	NA	33184787	33197744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_33184904_33194887_33195015_33195200_33195259_33196132
ENSMUSG00000053600.9_33184788_33197969_1	chr17	+	2138	4	FSM	ENSMUSG00000053600.9	ENSMUST00000039132.9	2376	4	0	238	0	-238	multi-exon	FALSE	canonical	3	72	junction_1	5.18544972870135	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGGTAAGTTCTGAGTATT	NA	False	NA	4	True	AATAAA	-13	NA	33184787	33197969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_33184904_33194887_33195015_33195200_33195259_33196132
ENSMUSG00000053603.5_81018851_81027731_1	chr10	-	886	7	Genic_Genomic	ENSMUSG00000053603.5	novel	1245	1	NA	NA	-8048	-412	multi-exon	FALSE	non_canonical	0	0	junction_1	0	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCATGCGCTGACAGCGCA	9588	False	NA	NA	False	NA	NA	NA	81027731	81018850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_-_81018931_81019809_81019910_81025772_81026134_81026215_81026346_81026431_81026481_81026875_81026903_81027592
ENSMUSG00000053644.14_56659816_56695269_1	chr18	-	1807	18	NNC	ENSMUSG00000053644.14	novel	1914	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	101.062144710201	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGGTTTGGTGAGTTTTT	NA	False	NA	-5	True	ATTAAA	-30	NA	56695269	56659815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684226_56684313_56692293_56692360_56693847_56693902_56695104
ENSMUSG00000053644.14_56659816_56695381_1	chr18	-	1909	18	NNC	ENSMUSG00000053644.14	novel	1914	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	101.073579693759	1861	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGGTTTGGTGAGTTTTT	NA	False	NA	-5	True	ATTAAA	-30	NA	56695381	56659815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692355_56693847_56693902_56695104
ENSMUSG00000053654.8_100153713_100156484_1	chr11	-	737	5	FSM	ENSMUSG00000053654.8	ENSMUST00000107406.2	1062	5	320	5	320	0	multi-exon	FALSE	canonical	3	72	junction_1	11.3688170009021	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGAATTCATCATTTGT	NA	False	NA	-11	True	AATAAA	-18	NA	100156484	100153712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425
ENSMUSG00000053684.9_121575842_121586623_1	chr10	+	976	3	FSM	ENSMUSG00000053684.9	ENSMUST00000065600.8	3123	3	0	2147	0	-1665	multi-exon	FALSE	canonical	3	147	junction_1	1	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCTTAATTTTTGACAAC	NA	False	NA	NA	False	NA	NA	NA	121575841	121586623	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_121576116_121581235_121581522_121586207
ENSMUSG00000053684.9_121575842_121587292_1	chr10	+	1645	3	FSM	ENSMUSG00000053684.9	ENSMUST00000065600.8	3123	3	0	1478	0	-996	multi-exon	FALSE	canonical	3	147	junction_1	1	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATCTTTCCAGATTTTTT	NA	False	NA	NA	False	NA	NA	NA	121575841	121587292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_121576116_121581235_121581522_121586207
ENSMUSG00000053714.9_25230489_25236325_1	chr7	+	431	3	NNC	ENSMUSG00000053714.9	novel	1887	7	NA	NA	135650	-29517	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	3.5	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTAGTTGTCTTGGTTCCA	9045	False	NA	NA	False	NA	NA	NA	25230488	25236325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_25230583_25230715_25230888_25236160
ENSMUSG00000053746.9_32665828_32667609_1	chr2	+	1011	5	NNC	ENSMUSG00000053746.9	novel	952	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	18.6061145863396	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAAGCTTCCTGTGGGGT	8221	False	NA	6	True	ATTAAA	-16	NA	32665827	32667609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_32665908_32666315_32666536_32666718_32666819_32666905_32667041_32667133
ENSMUSG00000053746.9_32665828_32667609_2	chr2	+	1105	4	FSM	ENSMUSG00000053746.9	ENSMUST00000138214.2	908	4	-49	-148	0	0	multi-exon	FALSE	canonical	3	42	junction_3	3.85861230093008	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAAGCTTCCTGTGGGGT	8221	False	NA	6	True	ATTAAA	-16	NA	32665827	32667609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_32665908_32666315_32666819_32666994_32667041_32667133
ENSMUSG00000053749.13_54975820_55116191_1	chr15	-	1964	9	NIC	ENSMUSG00000053749.13	novel	2752	2	NA	NA	-139118	-561	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCGAGGCCGCCCCGGCC	NA	False	NA	NA	False	NA	NA	NA	55116191	54975819	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_54976016_55012736_55012916_55015183_55015308_55044260_55044440_55072126_55072313_55075587_55075723_55078883_55078955_55081564_55081670_55115402
ENSMUSG00000053768.14_32769159_33037180_1	chr6	-	1521	8	NNC	ENSMUSG00000053768.14	novel	1467	8	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	306.500990443517	2420	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGCATTTTCTGACTAAG	NA	False	NA	-17	True	AATAAA	-18	NA	33037180	32769158	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945247_32985417_32985500_33026271_33026360_33036934
ENSMUSG00000053768.14_32769577_33037152_1	chr6	-	1075	8	NNC	ENSMUSG00000053768.14	novel	1550	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	306.500990443517	1060	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTTTGTACTCTCTTTC	NA	False	NA	-10	True	AATAAA	-21	NA	33037152	32769576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945247_32985417_32985500_33026271_33026360_33036934
ENSMUSG00000053768.14_32769577_33037180_1	chr6	-	1110	8	FSM	ENSMUSG00000053768.14	ENSMUST00000066379.11	1550	8	15	425	-8	0	multi-exon	FALSE	canonical	3	834	junction_3	29.0320020470023	1172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTTTGTACTCTCTTTC	NA	False	NA	-10	True	AATAAA	-21	NA	33037180	32769576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
ENSMUSG00000053774.10_32151075_32204028_1	chr16	+	1776	11	FSM	ENSMUSG00000053774.10	ENSMUST00000115151.5	10313	11	0	8537	0	-2685	multi-exon	FALSE	canonical	3	131	junction_8	18.7480665669823	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGGTAGCACGAAATGT	8252	False	NA	NA	False	NA	NA	NA	32151074	32204028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32151179_32171616_32171765_32178825_32178894_32186161_32186228_32188132_32188246_32191211_32191359_32194044_32194136_32194714_32194843_32200079_32200474_32200583_32200664_32203591
ENSMUSG00000053774.10_32151075_32204248_1	chr16	+	1996	11	FSM	ENSMUSG00000053774.10	ENSMUST00000115151.5	10313	11	0	8317	0	-2465	multi-exon	FALSE	canonical	3	131	junction_8	18.7480665669823	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGGGAAAAGCATACTTTA	8252	False	NA	NA	False	AATAAA	-20	NA	32151074	32204248	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32151179_32171616_32171765_32178825_32178894_32186161_32186228_32188132_32188246_32191211_32191359_32194044_32194136_32194714_32194843_32200079_32200474_32200583_32200664_32203591
ENSMUSG00000053774.10_32151075_32205574_1	chr16	+	3322	11	FSM	ENSMUSG00000053774.10	ENSMUST00000115151.5	10313	11	0	6991	0	-1139	multi-exon	FALSE	canonical	3	131	junction_8	18.7480665669823	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTGAGTCAAAGTTCTC	8252	False	NA	NA	False	NA	NA	NA	32151074	32205574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32151179_32171616_32171765_32178825_32178894_32186161_32186228_32188132_32188246_32191211_32191359_32194044_32194136_32194714_32194843_32200079_32200474_32200583_32200664_32203591
ENSMUSG00000053799.9_37538866_37671703_1	chr19	+	2739	22	FSM	ENSMUSG00000053799.9	ENSMUST00000066439.8	3543	22	0	804	0	0	multi-exon	TRUE	canonical	3	69	junction_16	11.2298193902402	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTGCTTGCATTTTTT	1869	False	NA	NA	False	AATAAA	-38	NA	37538865	37671703	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_37539014_37558830_37559003_37560040_37560089_37560305_37560397_37562159_37562206_37565383_37565589_37566867_37567024_37570640_37570710_37574258_37574343_37576085_37576133_37576264_37576386_37578298_37578371_37579315_37579414_37582109_37582216_37585542_37585653_37587013_37587126_37588006_37588142_37597373_37597554_37628069_37628212_37641830_37641905_37670107_37670221_37671293
ENSMUSG00000053838.15_6055986_6150162_1	chr11	-	3379	6	FSM	ENSMUSG00000053838.15	ENSMUST00000066496.10	3927	6	253	295	253	0	multi-exon	FALSE	canonical	3	343	junction_5	15.4090882274066	448	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCTGGTTCTGTCTGTGA	9711	False	NA	-6	True	AATAAA	-14	NA	6150162	6055985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6058356_6063242_6063432_6075417_6075562_6100494_6100628_6143153_6143477_6149942
ENSMUSG00000053841.16_129521931_129534858_1	chr4	-	2509	11	FSM	ENSMUSG00000053841.16	ENSMUST00000046425.16	4569	11	0	2060	0	-2055	multi-exon	FALSE	canonical	3	279	junction_10	28.2349074728429	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAACAGGGATACTCTAGCA	7860	False	NA	-16	True	ATTAAA	-15	NA	129534858	129521930	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525148_129525383_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048_129534221_129534763
ENSMUSG00000053856.8_31265661_31269870_1	chr5	+	1353	5	FSM	ENSMUSG00000053856.8	ENSMUST00000202760.4	670	5	0	-683	0	0	multi-exon	FALSE	canonical	3	9	junction_2	6.86931583201704	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGTGTGTGTGGGACCC	NA	False	NA	5	True	AATAAA	-17	NA	31265660	31269870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31265766_31266230_31266347_31267521_31267664_31268456_31268524_31268947
ENSMUSG00000053886.5_68729383_68800353_1	chr8	+	2561	9	FSM	ENSMUSG00000053886.5	ENSMUST00000066594.4	2718	9	164	-7	164	2	multi-exon	FALSE	canonical	3	24	junction_7	6.37867541108654	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTC	NA	False	NA	24	True	NA	NA	NA	68729382	68800353	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_68729525_68734684_68735064_68746954_68747112_68749305_68749478_68781903_68782013_68783686_68783889_68787716_68787848_68798604_68798826_68799305
ENSMUSG00000053898.13_28524774_28531672_1	chr7	+	1135	10	FSM	ENSMUSG00000053898.13	ENSMUST00000066264.13	1267	10	132	0	0	0	multi-exon	FALSE	canonical	3	645	junction_5	36.3137901908447	3112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTCTTTACTGCAG	NA	False	NA	14	True	AATAAA	-12	NA	28524773	28531672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28524838_28525298_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813_28530886_28531141_28531293_28531428
ENSMUSG00000053907.11_72410668_72416539_1	chr6	-	1916	9	FSM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	2	886	0	215	multi-exon	FALSE	canonical	3	591	junction_1	84.6271233116192	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGCAGTTACGATTAAACC	NA	False	NA	NA	False	NA	NA	NA	72416539	72410667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ENSMUSG00000053925.5_170701757_170712768_1	chr1	+	1046	6	Genic_Genomic	ENSMUSG00000053925.5_ENSMUSG00000096968.2	novel	1671	2	NA	NA	5543	-682	multi-exon	FALSE	non_canonical	0	0	junction_1	0	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCCCAGCCGGGAAAGCC	NA	False	NA	NA	False	NA	NA	NA	170701756	170712768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708611_170712635
ENSMUSG00000053925.5_170701757_170717003_1	chr1	+	978	6	Genic_Genomic	ENSMUSG00000053925.5	novel	1671	2	NA	NA	5543	7713	multi-exon	FALSE	non_canonical	0	0	junction_1	0	80	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAGAAACAAACCCATCC	NA	False	NA	NA	False	NA	NA	NA	170701756	170717003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708611_170716938
ENSMUSG00000053929.18_76542333_76543933_1	chr15	-	1037	3	NNC	ENSMUSG00000053929.18	novel	1168	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	35	82	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTTGTTTATTCTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76543933	76542332	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_76543066_76543418_76543495_76543705
ENSMUSG00000053929.18_76542333_76544335_2	chr15	-	1085	3	NNC	ENSMUSG00000053929.18	novel	1110	3	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	38.5	253	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTTGTTTATTCTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76544335	76542332	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_76543066_76543418_76543640_76544204
ENSMUSG00000053931.12_121220146_121251599_1	chr3	+	1792	7	FSM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	0	257	0	1	multi-exon	FALSE	canonical	3	4254	junction_2	486.023204750098	5062	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGATTACATGTGTACT	NA	False	NA	NA	False	AATAAA	-18	NA	121220145	121251599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
ENSMUSG00000053964.18_28537880_28541128_1	chr7	+	709	5	NNC	ENSMUSG00000053964.18	novel	519	2	NA	NA	2519	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4.60298815988049	64	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-13	NA	28537879	28541128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_28538089_28539928_28539960_28540288_28540378_28540569_28540733_28540911
ENSMUSG00000054021.7_43519140_43526461_1	chr13	+	1381	3	ISM	ENSMUSG00000054021.7	ENSMUST00000220458.2	435	4	36	3747	0	-3747	5prime_fragment	FALSE	canonical	3	180	junction_1	9	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATCTTCTTTATGTGTA	NA	False	NA	NA	False	ATTAAA	-16	NA	43519139	43526461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_43519217_43524194_43524345_43525307
ENSMUSG00000054021.7_43519140_43548679_2	chr13	+	1428	9	NNC	ENSMUSG00000054021.7	novel	1579	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	68.3025210003262	817	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTATTTTTTTGTACTTT	NA	False	NA	10	True	ATTAAA	-22	NA	43519139	43548679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_43519217_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533983_43534030_43536584_43536709_43538973_43539090_43548212
ENSMUSG00000054021.7_43519140_43548679_3	chr13	+	1436	9	NIC	ENSMUSG00000054021.7	novel	1579	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	172	junction_8	20.7710736361893	907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTATTTTTTTGTACTTT	NA	False	NA	10	True	ATTAAA	-22	NA	43519139	43548679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_43519217_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
ENSMUSG00000054021.7_43536404_43548679_1	chr13	+	888	3	ISM	ENSMUSG00000054021.7	ENSMUST00000066804.5	1367	8	12218	-1	3255	0	3prime_fragment	FALSE	canonical	3	172	junction_2	19	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTATTTTTTTGTACTTT	4702	False	NA	10	True	ATTAAA	-22	NA	43536403	43548679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_43536709_43538973_43539090_43548212
ENSMUSG00000054046.8_43361991_43376178_1	chr7	+	838	5	NNC	ENSMUSG00000054046.8	novel	1809	6	NA	NA	0	-780	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	31.5386667441729	61	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43361990	43376178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_43362129_43370390_43370581_43370791_43370961_43373178_43373316_43375974
ENSMUSG00000054046.8_43361991_43376178_2	chr7	+	938	5	NIC	ENSMUSG00000054046.8	novel	1809	6	NA	NA	0	-780	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	27.4988636128841	108	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43361990	43376178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_43362129_43370390_43370581_43370691_43370961_43373178_43373316_43375974
ENSMUSG00000054046.8_43362500_43376178_1	chr7	+	977	6	NNC	ENSMUSG00000054046.8	novel	718	3	NA	NA	-323	-780	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	23.4810561943027	91	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43362499	43376178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_43362686_43363215_43363307_43370390_43370581_43370791_43370961_43373178_43373316_43375974
ENSMUSG00000054046.8_43362500_43376178_2	chr7	+	1090	6	NNC	ENSMUSG00000054046.8	novel	718	3	NA	NA	-323	-780	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	19.3245957266899	252	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43362499	43376178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_43362686_43363202_43363307_43370390_43370581_43370691_43370961_43373178_43373316_43375974
ENSMUSG00000054046.8_43362500_43376178_3	chr7	+	1077	6	NNC	ENSMUSG00000054046.8	novel	718	3	NA	NA	-323	-780	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	15.8694675399019	258	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43362499	43376178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_43362686_43363215_43363307_43370390_43370581_43370691_43370961_43373178_43373316_43375974
ENSMUSG00000054057.3_18032503_18033222_1	chr2	-	471	2	NNC	ENSMUSG00000054057.3	novel	3217	2	NA	NA	349	234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGGCTCGGGTTCCTTAC	NA	False	NA	NA	False	NA	NA	NA	18033222	18032502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_18032675_18032923
ENSMUSG00000054065.13_140668059_140670423_1	chr7	+	1411	7	NIC	ENSMUSG00000054065.13	novel	1425	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	25.5255862921022	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCAGCTCCGTGTGTTTC	614	False	NA	19	True	ATTAAA	-17	NA	140668058	140670423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_140668298_140668393_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
ENSMUSG00000054079.13_93750779_93776592_1	chr11	-	1903	14	FSM	ENSMUSG00000054079.13	ENSMUST00000066888.10	2613	14	0	710	0	-710	multi-exon	TRUE	canonical	3	770	junction_1	49.2161035848126	1839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAGTGTACATGATTTT	NA	False	NA	-13	True	AATAAA	-14	NA	93776592	93750778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_93750895_93751619_93751664_93752784_93752928_93757171_93757347_93759156_93759281_93760631_93760723_93761305_93761407_93766609_93766785_93766880_93767007_93768809_93768899_93770888_93770960_93772900_93773000_93774492_93774609_93776159
ENSMUSG00000054079.13_93750779_93776592_2	chr11	-	1881	13	NNC	ENSMUSG00000054079.13	novel	2613	14	NA	NA	0	-710	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	243.908267706438	1632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAGTGTACATGATTTT	NA	False	NA	-13	True	AATAAA	-14	NA	93776592	93750778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_93750895_93752762_93752928_93757171_93757347_93759156_93759281_93760631_93760723_93761305_93761407_93766609_93766785_93766880_93767007_93768809_93768899_93770888_93770960_93772900_93773000_93774492_93774609_93776159
ENSMUSG00000054079.13_93750779_93776594_1	chr11	-	1905	14	FSM	ENSMUSG00000054079.13	ENSMUST00000066888.10	2613	14	-2	710	-2	-710	multi-exon	FALSE	canonical	3	770	junction_1	49.2161035848126	1849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAGTGTACATGATTTT	NA	False	NA	-13	True	AATAAA	-14	NA	93776594	93750778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_93750895_93751619_93751664_93752784_93752928_93757171_93757347_93759156_93759281_93760631_93760723_93761305_93761407_93766609_93766785_93766880_93767007_93768809_93768899_93770888_93770960_93772900_93773000_93774492_93774609_93776159
ENSMUSG00000054083.9_28592673_28597301_1	chr7	+	1735	6	NIC	ENSMUSG00000054083.9	novel	2445	3	NA	NA	2296	4313	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATATTGGCTTGGCTGGC	NA	False	NA	NA	False	NA	NA	NA	28592672	28597301	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273
ENSMUSG00000054091.10_122718078_122719283_1	chr3	+	384	2	FSM	ENSMUSG00000054091.10	ENSMUST00000106429.6	1160	2	226	550	226	-550	multi-exon	FALSE	canonical	3	1657	junction_1	0	1411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTTTTCATGGTTGAAG	NA	False	NA	5	True	ACTAAA	-21	NA	122718077	122719283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_122718306_122719127
ENSMUSG00000054091.10_122718078_122719385_1	chr3	+	486	2	FSM	ENSMUSG00000054091.10	ENSMUST00000106429.6	1160	2	226	448	226	-448	multi-exon	FALSE	canonical	3	1657	junction_1	0	16372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGTTATCTTT	NA	False	NA	107	True	AATAAA	-8	NA	122718077	122719385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_122718306_122719127
ENSMUSG00000054099.12_8472873_8503451_1	chr5	+	1415	12	FSM	ENSMUSG00000054099.12	ENSMUST00000066921.10	2784	12	23	1346	0	-1285	multi-exon	FALSE	canonical	3	29	junction_1	8.37055050175789	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCATAATTTGAATTATTT	NA	False	NA	NA	False	AATGAA	-24	NA	8472872	8503451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_8473040_8477195_8477268_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
ENSMUSG00000054136.7_89207122_89208934_1	chr15	+	1094	3	NNC	ENSMUSG00000054136.7	novel	1298	3	NA	NA	199	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	46.5	1338	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGGCCACTCTCTTGTG	NA	False	NA	NA	False	ATTAAA	-19	NA	89207121	89208934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_89207337_89207484_89207604_89208174
ENSMUSG00000054136.7_89207183_89208934_1	chr15	+	1038	3	FSM	ENSMUSG00000054136.7	ENSMUST00000066991.7	1298	3	260	0	260	0	multi-exon	FALSE	canonical	3	63	junction_1	15	1331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGGCCACTCTCTTGTG	NA	False	NA	NA	False	ATTAAA	-19	NA	89207182	89208934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_89207337_89207479_89207604_89208174
ENSMUSG00000054169.8_24471099_24484082_1	chr7	+	994	6	NNC	ENSMUSG00000054169.8	novel	1048	4	NA	NA	-5532	0	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_4	10.0598210719674	105	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCTCCTTCGACTCTAT	794	False	NA	NA	False	AATAAA	-26	NA	24471098	24484082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_24471221_24473674_24473740_24474864_24474981_24477550_24477687_24480294_24480655_24483887
ENSMUSG00000054169.8_24471099_24484082_2	chr7	+	1218	6	NNC	ENSMUSG00000054169.8	novel	1048	4	NA	NA	-5532	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	8.73155198117723	124	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCTCCTTCGACTCTAT	794	False	NA	NA	False	AATAAA	-26	NA	24471098	24484082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_24471221_24473674_24473740_24474864_24474981_24477550_24477911_24480294_24480655_24483887
ENSMUSG00000054169.8_24476631_24484082_1	chr7	+	825	4	FSM	ENSMUSG00000054169.8	ENSMUST00000206850.2	750	4	-75	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	11.8415464455544	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCTCCTTCGACTCTAT	1107	False	NA	NA	False	AATAAA	-26	NA	24476630	24484082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_24476765_24477550_24477687_24480294_24480655_24483887
ENSMUSG00000054181.12_57126239_57128664_1	chr2	-	977	2	NNC	ENSMUSG00000054181.12	novel	1541	2	NA	NA	-144	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	47	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTGCTTGGAGATAGAGAA	NA	False	NA	NA	False	AATAAA	-25	NA	57128664	57126238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_57126985_57128433
ENSMUSG00000054181.12_57128394_57257687_1	chr2	-	2576	17	NIC	ENSMUSG00000054181.12	novel	1541	2	NA	NA	-129167	-2155	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	158	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTCCCCTCGTGCGCCTC	NA	False	NA	NA	False	NA	NA	NA	57257687	57128393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_57128580_57157984_57158095_57179856_57180029_57194372_57194498_57195819_57195918_57196943_57197108_57228858_57229024_57230075_57230221_57235242_57235437_57245471_57245607_57245771_57245948_57246530_57246663_57247666_57247826_57254042_57254156_57254261_57254341_57254516_57254616_57257363
ENSMUSG00000054199.18_88816951_88819187_2	chr3	+	1194	8	NNC	ENSMUSG00000054199.19	novel	7537	32	NA	NA	19209	1777	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1096	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGCCAAAATCACCACGAT	NA	False	NA	NA	False	NA	NA	NA	88816950	88819187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_88817218_88817436_88817547_88817620_88817726_88817932_88818108_88818189_88818322_88818593_88818747_88818843_88818979_88819070
ENSMUSG00000054200.8_38085937_38102711_1	chr19	+	983	3	FSM	ENSMUSG00000054200.8	ENSMUST00000067098.8	1401	3	418	0	418	0	multi-exon	FALSE	canonical	2	4	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAATCTCTATCTTGTGA	NA	False	NA	NA	False	NA	NA	NA	38085936	38102711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_38086142_38095829_38095959_38102062
ENSMUSG00000054226.14_85892701_85931897_1	chr6	+	899	7	NNC	ENSMUSG00000054226.14	novel	2222	7	NA	NA	0	24631	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	71.7209097048336	1636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGACATTGGAGTGTAAA	3390	False	NA	NA	False	AAAAAG	-1	NA	85892700	85931897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757_85905958_85931822
ENSMUSG00000054226.14_85892737_85905502_1	chr6	+	1124	5	FSM	ENSMUSG00000054226.14	ENSMUST00000202803.4	716	5	17	-425	0	0	multi-exon	FALSE	canonical	3	153	junction_1	23.847169643377	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTAGATTTGGACTCTTA	3426	False	NA	NA	False	ATTAAA	-18	NA	85892736	85905502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789
ENSMUSG00000054226.14_85892737_85906024_1	chr6	+	963	7	FSM	ENSMUSG00000054226.14	ENSMUST00000113753.8	2222	7	17	1242	0	17	multi-exon	FALSE	canonical	3	4	junction_1	87.3983536585342	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACTCTAAGCCAGGTGTG	3426	False	NA	NA	False	NA	NA	NA	85892736	85906024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_85892773_85896898_85897007_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
ENSMUSG00000054226.14_85892737_85906024_2	chr6	+	1646	5	FSM	ENSMUSG00000054226.14	ENSMUST00000202803.4	716	5	17	-947	0	17	multi-exon	FALSE	canonical	3	153	junction_1	23.847169643377	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACTCTAAGCCAGGTGTG	3426	False	NA	NA	False	NA	NA	NA	85892736	85906024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789
ENSMUSG00000054226.14_85892737_85906024_3	chr6	+	848	6	NNC	ENSMUSG00000054226.14	novel	2103	6	NA	NA	0	17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	78.0323010041355	222	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACTCTAAGCCAGGTGTG	3426	False	NA	NA	False	NA	NA	NA	85892736	85906024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904796_85904967_85905757
ENSMUSG00000054226.14_85892737_85906024_4	chr6	+	860	6	NNC	ENSMUSG00000054226.14	novel	2103	6	NA	NA	0	17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	78.0323010041355	1090	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACTCTAAGCCAGGTGTG	3426	False	NA	NA	False	NA	NA	NA	85892736	85906024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904351_85904789_85904967_85905757
ENSMUSG00000054226.14_85892737_85906024_5	chr6	+	1299	5	NIC	ENSMUSG00000054226.14	novel	2103	6	NA	NA	0	17	intron_retention	FALSE	canonical	3	153	junction_1	22.8842194535885	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACTCTAAGCCAGGTGTG	3426	False	NA	NA	False	NA	NA	NA	85892736	85906024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904967_85905757
ENSMUSG00000054226.14_85892737_85907266_1	chr6	+	754	6	NNC	ENSMUSG00000054226.14	novel	2222	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_5	75.7643715739793	62	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTTATTATGTC	3426	False	NA	24	True	NA	NA	NA	85892736	85907266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85907100
ENSMUSG00000054226.14_85892737_85910841_1	chr6	+	831	7	NNC	ENSMUSG00000054226.14	novel	2222	7	NA	NA	0	3575	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	71.7209097048336	1485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCCCCCCCCCCCAAAGA	3426	False	NA	NA	False	NA	NA	NA	85892736	85910841	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757_85905958_85910798
ENSMUSG00000054237.7_38176929_38212435_1	chr19	-	1251	14	FSM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	151	0	151	0	multi-exon	TRUE	canonical	3	295	junction_2	36.3583414649629	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCAGAGTCTTTCCT	NA	False	NA	-7	True	AATAAA	-20	NA	38212435	38176928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_38177249_38178276_38178356_38184144_38184184_38188007_38188127_38189994_38190038_38193143_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
ENSMUSG00000054237.7_38176929_38212586_1	chr19	-	1397	14	NNC	ENSMUSG00000054237.7	novel	1402	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_6	94.2161056094605	1083	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCAGAGTCTTTCCT	NA	False	NA	-7	True	AATAAA	-20	NA	38212586	38176928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_38177249_38178276_38178356_38184144_38184184_38188007_38188127_38189994_38190038_38193143_38193253_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
ENSMUSG00000054237.7_38176929_38212586_2	chr19	-	1401	14	NNC	ENSMUSG00000054237.7	novel	1402	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	97.8504474142638	1053	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCAGAGTCTTTCCT	NA	False	NA	-7	True	AATAAA	-20	NA	38212586	38176928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_38177249_38178276_38178356_38184144_38184184_38188007_38188127_38189994_38190038_38193143_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208171_38210280_38210362_38212409
ENSMUSG00000054237.7_38192991_38212435_1	chr19	-	804	9	ISM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	151	16062	151	0	5prime_fragment	FALSE	canonical	3	315	junction_8	31.196954979613	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTCTTTAGCATTATGG	NA	False	NA	NA	False	AATAAA	-10	NA	38212435	38192990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
ENSMUSG00000054237.7_38192991_38212586_1	chr19	-	955	9	ISM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	0	16062	0	0	5prime_fragment	FALSE	canonical	3	315	junction_8	31.196954979613	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTCTTTAGCATTATGG	NA	False	NA	NA	False	AATAAA	-10	NA	38212586	38192990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
ENSMUSG00000054247.7_35434151_35441253_1	chr8	+	728	3	NNC	ENSMUSG00000054247.7	novel	834	2	NA	NA	564	6372	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	3	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTTGTTTGTTTTGTT	NA	False	NA	NA	False	CATAAA	-20	NA	35434150	35441253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_35434214_35434668_35434900_35440819
ENSMUSG00000054256.12_115568896_115585245_1	chr5	+	575	8	ISM	ENSMUSG00000054256.12	ENSMUST00000151444.8	2636	11	1138	1801	232	1492	3prime_fragment	FALSE	canonical	3	78	junction_1	9.67217764560615	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGGCTCAGATTCCGT	3627	False	NA	NA	False	NA	NA	NA	115568895	115585245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_115568948_115571910_115571953_115573512_115573606_115576771_115576821_115578543_115578627_115579386_115579505_115583453_115583535_115585188
ENSMUSG00000054302.16_54720251_54742636_1	chr12	-	1030	6	FSM	ENSMUSG00000054302.16	ENSMUST00000161592.8	4186	6	30	3126	-8	0	multi-exon	FALSE	canonical	3	353	junction_3	29.9973332148043	1464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGGAGTGGTTATCAAC	NA	False	NA	-5	True	ATTAAA	-19	NA	54742636	54720250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_54720636_54725294_54725409_54732644_54732757_54738784_54738881_54739559_54739742_54742495
ENSMUSG00000054309.10_21320705_21336194_1	chr12	+	932	7	NIC	ENSMUSG00000054309.10	novel	336	3	NA	NA	-14687	-347	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTCCAGCTCCGGCTTTG	4283	False	NA	NA	False	NA	NA	NA	21320704	21336194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21336106
ENSMUSG00000054309.10_21320705_21336194_2	chr12	+	927	7	NNC	ENSMUSG00000054309.10	novel	336	3	NA	NA	-14687	-347	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1465	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTCCAGCTCCGGCTTTG	4283	False	NA	NA	False	NA	NA	NA	21320704	21336194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_21320959_21321419_21321570_21322056_21322150_21324766_21324899_21326820_21326900_21329400_21329532_21336106
ENSMUSG00000054309.10_21336359_21364836_1	chr12	+	2278	18	FSM	ENSMUSG00000054309.10	ENSMUST00000067284.10	2499	18	0	221	0	0	multi-exon	FALSE	canonical	3	692	junction_10	70.3324286444819	1063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGGTGCCTGTTTACTTT	NA	False	NA	13	True	AATAAA	-17	NA	21336358	21364836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
ENSMUSG00000054312.7_95769966_95778831_1	chr3	-	461	3	NNC	ENSMUSG00000054312.7	novel	488	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	450.5	6518	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGAAGGCTTGGACATA	NA	False	NA	NA	False	AATAAA	-17	NA	95778831	95769965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_95770245_95777805_95777921_95778764
ENSMUSG00000054362.10_106448106_106472982_1	chr4	-	2050	8	ISM	ENSMUSG00000054362.10	ENSMUST00000106788.2	1569	10	1453	-401	1453	0	3prime_fragment	FALSE	canonical	1	5	junction_3	4.52656557650139	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGGTTCTACCAGTTGTT	NA	False	NA	NA	False	AATAAA	-23	NA	106472982	106448105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_106448885_106464485_106464620_106467596_106467723_106468609_106468772_106470305_106470450_106470564_106470700_106472231_106472355_106472535
ENSMUSG00000054379.8_103105425_103126833_2	chr3	-	693	3	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20542	117	intron_retention	TRUE	non_canonical	0	0	junction_1	7.5	654	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCCTTGCAATTTTATT	NA	False	NA	-23	True	NA	NA	NA	103126833	103105424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_103105864_103106099_103106313_103126792
ENSMUSG00000054379.8_103105542_103106156_1	chr3	-	536	2	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	135	0	intron_retention	TRUE	non_canonical	0	0	junction_1	0	709	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTTCCGTCCCAGGTTT	NA	False	NA	-3	True	NA	NA	NA	103106156	103105541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_103106032_103106110
ENSMUSG00000054379.8_103105542_103126833_1	chr3	-	579	4	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20542	0	intron_retention	TRUE	non_canonical	0	0	junction_1	7.07106781186548	324	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTTCCGTCCCAGGTTT	NA	False	NA	-3	True	NA	NA	NA	103126833	103105541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_103105630_103105709_103105942_103106094_103106313_103126792
ENSMUSG00000054379.8_103105542_103126833_3	chr3	-	587	4	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20542	0	intron_retention	TRUE	canonical	0	0	junction_1	0.471404520791032	359	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTTCCGTCCCAGGTTT	NA	False	NA	-3	True	NA	NA	NA	103126833	103105541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_103105630_103105665_103106059_103106211_103106277_103126792
ENSMUSG00000054379.8_103105542_103126833_4	chr3	-	580	3	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20542	0	intron_retention	TRUE	canonical	0	0	junction_1	0	851	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTTCCGTCCCAGGTTT	NA	False	NA	-3	True	NA	NA	NA	103126833	103105541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_103106020_103106211_103106273_103126792
ENSMUSG00000054379.8_103105542_103126833_5	chr3	-	578	4	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20542	0	intron_retention	TRUE	non_canonical	0	0	junction_1	0	817	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTTCCGTCCCAGGTTT	NA	False	NA	-3	True	NA	NA	NA	103126833	103105541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_103105630_103105670_103106059_103106211_103106273_103126792
ENSMUSG00000054379.8_103105542_103126833_6	chr3	-	576	3	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20542	0	intron_retention	FALSE	non_canonical	0	0	junction_1	7.5	129	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTTCCGTCCCAGGTTT	NA	False	NA	-3	True	NA	NA	NA	103126833	103105541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_103105864_103106099_103106313_103126792
ENSMUSG00000054379.8_103105542_103126833_7	chr3	-	579	4	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20542	0	intron_retention	TRUE	non_canonical	0	0	junction_1	7.07106781186548	415	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTTCCGTCCCAGGTTT	NA	False	NA	-3	True	NA	NA	NA	103126833	103105541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_103105630_103105704_103105942_103106099_103106313_103126792
ENSMUSG00000054379.8_103105542_103126833_8	chr3	-	812	2	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20542	0	intron_retention	FALSE	canonical	3	15	junction_1	0	1026	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTTCCGTCCCAGGTTT	NA	False	NA	-3	True	NA	NA	NA	103126833	103105541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_103106313_103126792
ENSMUSG00000054379.8_103105542_103126833_9	chr3	-	580	3	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20542	0	intron_retention	TRUE	canonical	0	0	junction_1	0	840	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTTCCGTCCCAGGTTT	NA	False	NA	-3	True	NA	NA	NA	103126833	103105541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_103106059_103106250_103106273_103126792
ENSMUSG00000054387.14_132919092_132953080_1	chr1	-	1832	10	FSM	ENSMUSG00000054387.14	ENSMUST00000191212.7	2799	10	15	952	-4	0	multi-exon	FALSE	canonical	3	144	junction_5	107.251521615728	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTTATTCACTTCCAAA	NA	False	NA	-58	True	AATACA	-15	NA	132953080	132919091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132936874_132936931_132938802_132938937_132940374_132940453_132946514_132946623_132952985
ENSMUSG00000054387.14_132919395_132953080_2	chr1	-	1594	11	FSM	ENSMUSG00000054387.14	ENSMUST00000188090.7	7105	11	74	5437	-4	-303	multi-exon	FALSE	canonical	3	199	junction_6	81.9383304687129	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGAGTCAGTCACAGAGAA	NA	False	NA	NA	False	ATTAAA	-15	NA	132953080	132919394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132952985
ENSMUSG00000054400.17_104977562_104984574_1	chr8	+	824	2	FSM	ENSMUSG00000054400.17	ENSMUST00000212433.2	1304	2	48	432	0	-432	multi-exon	FALSE	canonical	3	282	junction_1	0	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAACAAAAGAAAGATC	4861	False	NA	NA	False	NA	NA	NA	104977561	104984574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_104977728_104983916
ENSMUSG00000054405.15_132262878_132280783_1	chr4	+	1114	9	FSM	ENSMUSG00000054405.15	ENSMUST00000094657.10	1401	9	17	270	0	14	multi-exon	FALSE	canonical	3	2684	junction_8	233.065676097962	4854	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGTTGCCCCGACTCCA	2348	False	NA	14	True	ATTAAA	-14	NA	132262877	132280783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
ENSMUSG00000054408.10_54973468_54983033_2	chr8	-	3464	5	NNC	ENSMUSG00000054408.10	novel	3466	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	423.496753234308	1146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGGTTTATGTGTTTTT	NA	False	NA	-4	True	AATAAA	-38	NA	54983033	54973467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_54976431_54977975_54978092_54979485_54979557_54981372_54981451_54982797
ENSMUSG00000054418.7_117502073_117503623_1	chr11	+	724	2	FSM	ENSMUSG00000054418.7	ENSMUST00000155384.2	1784	2	0	1060	0	-1060	multi-exon	FALSE	canonical	3	27	junction_1	0	362	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCGGTCTCAGAGCTTTC	NA	False	NA	NA	False	NA	NA	NA	117502072	117503623	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_117502261_117503087
ENSMUSG00000054426.12_115675230_115681536_1	chr3	-	575	3	NNC	ENSMUSG00000054426.12	novel	739	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	24.5	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTTGGCTATGGTG	1151	False	NA	-5	True	NA	NA	NA	115681536	115675229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_115675488_115679862_115680068_115681424
ENSMUSG00000054426.12_115675230_115681746_1	chr3	-	785	3	NNC	ENSMUSG00000054426.12	novel	739	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	24.5	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTTGGCTATGGTG	941	False	NA	-5	True	NA	NA	NA	115681746	115675229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_115675488_115679862_115680068_115681424
ENSMUSG00000054426.12_115675230_115681746_2	chr3	-	580	2	FSM	ENSMUSG00000054426.12	ENSMUST00000185424.2	433	2	-145	-2	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTTGGCTATGGTG	941	False	NA	-5	True	NA	NA	NA	115681746	115675229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_115675488_115681424
ENSMUSG00000054434.15_123214389_123255391_1	chr5	+	1692	12	FSM	ENSMUSG00000054434.15	ENSMUST00000067505.15	2164	12	51	421	0	319	multi-exon	FALSE	canonical	3	93	junction_3	11.7768508046945	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTACCTGTGTTGTCTCTTG	NA	False	NA	25	True	NA	NA	NA	123214388	123255391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_123214559_123236237_123236357_123237899_123238017_123239687_123239748_123240316_123240413_123242484_123242575_123252164_123252231_123252630_123252693_123253162_123253256_123253723_123253789_123254264_123254334_123254706
ENSMUSG00000054452.11_81395434_81401997_1	chr10	+	1106	7	FSM	ENSMUSG00000054452.11	ENSMUST00000002518.9	1411	7	106	199	106	106	multi-exon	FALSE	canonical	3	2772	junction_6	274.064925397858	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTGTTTATGATTTCTT	163	False	NA	17	True	AATAAA	-17	NA	81395433	81401997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_81395503_81397052_81397151_81399928_81399993_81400506_81400552_81400681_81400745_81401125_81401201_81401305
ENSMUSG00000054452.11_81397052_81401998_1	chr10	+	1039	6	FSM	ENSMUSG00000054452.11	ENSMUST00000219870.2	1410	6	174	197	0	107	multi-exon	FALSE	canonical	3	2772	junction_5	277.977984739799	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGTTTATGATTTCTTT	796	False	NA	18	True	AATAAA	-18	NA	81397051	81401998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_81397151_81399928_81399993_81400506_81400552_81400681_81400745_81401125_81401201_81401305
ENSMUSG00000054455.6_173579455_173620117_1	chr2	+	866	6	FSM	ENSMUSG00000054455.6	ENSMUST00000067530.6	7032	6	151	6015	151	199	multi-exon	FALSE	canonical	3	50	junction_2	5.74804314527997	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCACAGGTCTTGCCTTTA	NA	False	NA	13	True	AAAAAG	-20	NA	173579454	173620117	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_173579544_173603909_173604063_173613313_173613418_173616186_173616268_173617904_173618082_173619855
ENSMUSG00000054455.6_173579455_173621150_1	chr2	+	1899	6	FSM	ENSMUSG00000054455.6	ENSMUST00000067530.6	7032	6	151	4982	151	1232	multi-exon	FALSE	canonical	3	50	junction_2	5.74804314527997	974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTTTGTCATTTTGTCA	NA	False	NA	18	True	AATAAA	-15	NA	173579454	173621150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_173579544_173603909_173604063_173613313_173613418_173616186_173616268_173617904_173618082_173619855
ENSMUSG00000054474.16_71105382_71121331_1	chr6	-	1753	9	FSM	ENSMUSG00000054474.16	ENSMUST00000160918.8	2077	9	92	232	0	0	multi-exon	TRUE	canonical	1	2	junction_8	2.47171499166065	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGGTGTTTTGTTTTGTT	NA	False	NA	0	True	NA	NA	NA	71121331	71105381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_71105837_71106195_71106348_71108631_71108758_71108858_71109008_71111064_71111296_71115634_71115788_71116732_71116928_71118203_71118439_71121274
ENSMUSG00000054509.8_56813076_56823472_1	chr14	+	704	3	ISM	ENSMUSG00000054509.8	ENSMUST00000161553.2	6387	35	0	73779	0	-73777	5prime_fragment	FALSE	canonical	3	20	junction_2	2	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTTGCTTATGTGTGT	1087	False	NA	NA	False	NA	NA	NA	56813075	56823472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_56813188_56821615_56821749_56823013
ENSMUSG00000054582.5_163889307_163892458_1	chr2	+	593	2	NNC	ENSMUSG00000054582.5	novel	750	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	33	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGCCTGGAAGGAGGG	NA	False	NA	NA	False	ATTAAA	-17	NA	163889306	163892458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_163889338_163891896
ENSMUSG00000054604.8_64672359_64676503_1	chr16	+	1058	3	FSM	ENSMUSG00000054604.8	ENSMUST00000067744.8	4425	3	0	3367	0	154	multi-exon	FALSE	canonical	3	981	junction_2	152	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGTTCATTTTTATA	NA	False	NA	21	True	ATTAAA	-14	NA	64672358	64676503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_64672600_64673161_64673389_64675913
ENSMUSG00000054612.5_136496343_136729914_1	chr7	+	676	4	NIC	ENSMUSG00000054612.5	novel	2894	5	NA	NA	0	-2081	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	106.094297678999	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACGTGATGTGGCTGCCCT	NA	False	NA	30	True	ATTAAA	-21	NA	136496342	136729914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_136496417_136687677_136687839_136723217_136723358_136729613
ENSMUSG00000054612.5_136496343_136729914_2	chr7	+	970	6	NNC	ENSMUSG00000054612.5	novel	2894	5	NA	NA	0	-2081	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	98.1150345258055	1736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACGTGATGTGGCTGCCCT	NA	False	NA	30	True	ATTAAA	-21	NA	136496342	136729914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_136496417_136521584_136521742_136552996_136553134_136687677_136687839_136723217_136723358_136729613
ENSMUSG00000054612.5_136496343_136729914_3	chr7	+	813	5	FSM	ENSMUSG00000054612.5	ENSMUST00000081510.4	2894	5	0	2081	0	-2081	multi-exon	FALSE	canonical	3	172	junction_1	21.7887585695009	1774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACGTGATGTGGCTGCCCT	NA	False	NA	30	True	ATTAAA	-21	NA	136496342	136729914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_136496417_136552996_136553134_136687677_136687839_136723217_136723358_136729613
ENSMUSG00000054626.12_52785715_52799673_1	chrX	-	1024	8	NNC	ENSMUSG00000054626.12	novel	1032	8	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	47	junction_7	85.2532840949813	2133	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGTGGCAAATAGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	52799673	52785714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798218_52799598
ENSMUSG00000054626.12_52785715_52799673_2	chrX	-	1013	8	NNC	ENSMUSG00000054626.12	novel	1032	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	99.6084169871898	2065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGTGGCAAATAGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	52799673	52785714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798207_52799598
ENSMUSG00000054626.12_52785715_52799673_3	chrX	-	1050	8	NIC	ENSMUSG00000054626.12	novel	1032	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_7	100.637559426622	1616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGTGGCAAATAGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	52799673	52785714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798236_52799590
ENSMUSG00000054626.12_52785920_52799673_1	chrX	-	819	8	NNC	ENSMUSG00000054626.12	novel	1032	8	NA	NA	0	-205	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_7	85.2532840949813	408	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTTTGAAAGGCTCTTT	NA	False	NA	NA	False	AATAAA	-32	NA	52799673	52785919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798218_52799598
ENSMUSG00000054626.12_52785920_52799673_2	chrX	-	837	8	FSM	ENSMUSG00000054626.12	ENSMUST00000067763.10	1032	8	-10	205	0	-205	multi-exon	FALSE	canonical	3	95	junction_7	69.0238054173031	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTTTGAAAGGCTCTTT	NA	False	NA	NA	False	AATAAA	-32	NA	52799673	52785919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798236_52799598
ENSMUSG00000054626.12_52785920_52799673_3	chrX	-	789	8	FSM	ENSMUSG00000054626.12	ENSMUST00000114810.2	984	8	-10	205	0	-205	multi-exon	FALSE	canonical	3	140	junction_7	54.1238187409392	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTTTGAAAGGCTCTTT	NA	False	NA	NA	False	AATAAA	-32	NA	52799673	52785919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798188_52799598
ENSMUSG00000054676.18_37883273_37894515_1	chr7	+	610	3	FSM	ENSMUSG00000054676.18	ENSMUST00000178876.10	3282	3	195	2477	0	119	multi-exon	FALSE	canonical	3	43	junction_1	1.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCCATGCTAGTGCATTC	NA	False	NA	NA	False	NA	NA	NA	37883272	37894515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_37883325_37888030_37888202_37894128
ENSMUSG00000054676.18_37883273_37896016_1	chr7	+	2111	3	FSM	ENSMUSG00000054676.18	ENSMUST00000178876.10	3282	3	195	976	0	0	multi-exon	FALSE	canonical	3	43	junction_1	1.5	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTCATATCTTTCTGT	NA	False	NA	9	True	TTTAAA	-5	NA	37883272	37896016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_37883325_37888030_37888202_37894128
ENSMUSG00000054717.8_57964941_57967429_1	chr8	+	1024	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	0	1604	0	1186	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	16841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCATAGGAATTTGTATTA	NA	False	NA	-18	True	NA	NA	NA	57964940	57967429	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
ENSMUSG00000054717.8_57964941_57967523_1	chr8	+	1118	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	0	1510	0	1280	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	27273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTGTGTTTGTATTA	NA	False	NA	4	True	AATAAA	-15	NA	57964940	57967523	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
ENSMUSG00000054723.7_56935310_57029137_1	chr17	-	548	5	Genic_Genomic	ENSMUSG00000054723.7	novel	345	2	NA	NA	-4115	85626	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATCATTTAAAAAAAAAAAAA	2408	False	NA	NA	False	NA	NA	NA	57029137	56935309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_-_56935316_57024769_57024943_57028034_57028128_57028318_57028442_57028984
ENSMUSG00000054723.7_57024767_57029137_1	chr17	-	498	4	NNC	ENSMUSG00000054723.7	novel	345	2	NA	NA	-4115	-2065	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1168	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGAGGTTTCCAGCGCGCAA	2408	False	NA	NA	False	NA	NA	NA	57029137	57024766	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_57024943_57028034_57028128_57028358_57028442_57028991
ENSMUSG00000054723.7_57024767_57029137_2	chr17	-	553	4	NNC	ENSMUSG00000054723.7	novel	345	2	NA	NA	-4115	-2065	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	28441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGAGGTTTCCAGCGCGCAA	2408	False	NA	NA	False	NA	NA	NA	57029137	57024766	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_57024943_57028034_57028136_57028318_57028442_57028984
ENSMUSG00000054723.7_57024767_57029137_3	chr17	-	531	4	NNC	ENSMUSG00000054723.7	novel	345	2	NA	NA	-4115	-2065	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7217	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGAGGTTTCCAGCGCGCAA	2408	False	NA	NA	False	NA	NA	NA	57029137	57024766	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_57024929_57028034_57028128_57028318_57028442_57028984
ENSMUSG00000054723.7_57024767_57029137_4	chr17	-	538	4	NNC	ENSMUSG00000054723.7	novel	345	2	NA	NA	-4115	-2065	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	21045	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGAGGTTTCCAGCGCGCAA	2408	False	NA	NA	False	NA	NA	NA	57029137	57024766	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_57024943_57028034_57028128_57028318_57028442_57028991
ENSMUSG00000054723.7_57024798_57029137_1	chr17	-	502	4	NNC	ENSMUSG00000054723.7	novel	345	2	NA	NA	-4115	-2096	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9686	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCAAGGGTAGCCGGCTA	2408	False	NA	NA	False	NA	NA	NA	57029137	57024797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_57024943_57028034_57028128_57028330_57028442_57028984
ENSMUSG00000054723.7_57024798_57029137_2	chr17	-	505	4	NNC	ENSMUSG00000054723.7	novel	345	2	NA	NA	-4115	-2096	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	15190	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCAAGGGTAGCCGGCTA	2408	False	NA	NA	False	NA	NA	NA	57029137	57024797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_57024934_57028034_57028128_57028318_57028442_57028984
ENSMUSG00000054727.3_52744868_52759810_1	chrX	-	1230	9	NNC	ENSMUSG00000054727.3	novel	1224	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	458.126006138049	12209	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGACTTTAGTATATTT	NA	False	NA	-11	True	AGTAAA	-17	NA	52759810	52744867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52749908_52751980_52752016_52752989_52753054_52753482_52753824_52759728
ENSMUSG00000054727.3_52744868_52759810_3	chrX	-	1233	9	NNC	ENSMUSG00000054727.3	novel	1224	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	459.078901170594	11626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGACTTTAGTATATTT	NA	False	NA	-11	True	AGTAAA	-17	NA	52759810	52744867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_52745154_52745318_52745424_52747619_52747719_52748908_52749002_52749785_52749908_52751980_52752016_52752989_52753054_52753476_52753824_52759728
ENSMUSG00000054727.3_52744868_52759810_4	chrX	-	1234	8	NNC	ENSMUSG00000054727.3	novel	1224	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	490.52375173931	8134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGACTTTAGTATATTT	NA	False	NA	-11	True	AGTAAA	-17	NA	52759810	52744867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52749908_52752956_52753054_52753476_52753824_52759728
ENSMUSG00000054733.10_64360075_64450196_1	chr14	-	913	3	NNC	ENSMUSG00000054733.10	novel	1180	6	NA	NA	204201	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	37	92	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAACCGCCTGCTGTGAGT	5765	False	NA	-5	True	AATAAA	-19	NA	64450196	64360074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_64360803_64447876_64447984_64450118
ENSMUSG00000054752.17_53631471_53650061_1	chr4	+	640	4	FSM	ENSMUSG00000054752.17	ENSMUST00000107643.8	2350	4	-19	1729	0	-1729	multi-exon	FALSE	canonical	3	14	junction_1	1.69967317119759	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAGCATCTACTTGTGG	-12	True	NA	NA	False	AATAAA	-19	NA	53631470	53650061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_53631613_53646986_53647083_53647669_53647802_53649791
ENSMUSG00000054753.10_3204498_3218931_1	chr7	-	3351	12	FSM	ENSMUSG00000054753.10	ENSMUST00000171749.3	3449	12	98	0	0	0	multi-exon	FALSE	canonical	3	117	junction_11	40.7771610034849	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9604	False	NA	87	True	NA	NA	NA	3218931	3204497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214128_3218840
ENSMUSG00000054753.10_3205644_3218931_1	chr7	-	2205	12	FSM	ENSMUSG00000054753.10	ENSMUST00000171749.3	3449	12	98	1146	0	-1146	multi-exon	FALSE	canonical	3	117	junction_11	40.7771610034849	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTGTGTGGGG	9604	False	NA	NA	False	NA	NA	NA	3218931	3205643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214128_3218840
ENSMUSG00000054766.14_29952111_29961441_1	chr2	+	1430	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	1148	246	0	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	32042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGGTATAGACGGTGAG	NA	False	NA	NA	False	NA	NA	NA	29952110	29961441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
ENSMUSG00000054766.14_29952111_29961807_1	chr2	+	1796	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	782	246	366	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	37204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCTGATGCTTTTCTGTC	NA	False	NA	16	True	AATAAA	-18	NA	29952110	29961807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
ENSMUSG00000054766.14_29960518_29962589_1	chr2	+	1741	2	ISM	ENSMUSG00000054766.14	ENSMUST00000147590.2	844	3	336	-1148	336	0	3prime_fragment	FALSE	canonical	3	15823	junction_1	0	10409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTCATTCTCCTTGTT	NA	False	NA	19	True	AATAAA	-24	NA	29960517	29962589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_29960600_29960930
ENSMUSG00000054770.17_58035130_58054944_1	chr1	-	1471	7	Genic_Genomic	ENSMUSG00000054770.17	novel	5016	10	NA	NA	3171	-32369	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCGCAAAGATGCGCTGCCA	NA	False	NA	NA	False	NA	NA	NA	58054944	58035129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_-_58035472_58037254_58037381_58039122_58039299_58040376_58040455_58042052_58042139_58052665_58052902_58054517
ENSMUSG00000054814.15_74161369_74226409_1	chr5	-	2495	9	NIC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	0	1091	combination_of_known_junctions	FALSE	canonical	3	126	junction_8	53.0377224247045	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTCTTGGTTTTCCTACA	NA	False	NA	-19	True	ATTAAA	-29	NA	74226409	74161368	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74226307
ENSMUSG00000054836.13_110134272_110145189_1	chr9	+	786	5	ISM	ENSMUSG00000054836.13	ENSMUST00000199592.5	1304	7	31	5202	0	247	5prime_fragment	FALSE	canonical	3	134	junction_1	15.6923548264752	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGACTGGCACCGTGGGA	2213	False	NA	NA	False	AATAAA	-16	NA	110134271	110145189	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_110134418_110139162_110139242_110141636_110141708_110143043_110143163_110144818
ENSMUSG00000054836.13_110134272_110150393_1	chr9	+	1353	8	NNC	ENSMUSG00000054836.13	novel	2219	8	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	63.5539301760035	553	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGAGGTTGTCTTTTT	2213	False	NA	9	True	AATAAA	-19	NA	110134271	110150393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_110134418_110137258_110137337_110139162_110139242_110141636_110141708_110143043_110143163_110144818_110145021_110148637_110148785_110149882
ENSMUSG00000054836.13_110134272_110151170_1	chr9	+	2052	7	FSM	ENSMUSG00000054836.13	ENSMUST00000199592.5	1304	7	31	-779	0	0	multi-exon	FALSE	canonical	3	125	junction_6	18.4157239577729	625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATTGTGTGTGTGTTCCT	2213	False	NA	6	True	AATAAA	-14	NA	110134271	110151170	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_110134418_110139162_110139242_110141636_110141708_110143043_110143163_110144818_110145021_110148637_110148785_110149882
ENSMUSG00000054894.7_69771742_69790612_1	chr12	+	659	5	FSM	ENSMUSG00000054894.7	ENSMUST00000021372.6	1485	5	6	820	0	-820	multi-exon	FALSE	canonical	3	102	junction_1	45.2513811943901	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTGGTGTCACTATTAA	NA	False	NA	NA	False	ATTAAA	-16	NA	69771741	69790612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_69771789_69784724_69784836_69787672_69787882_69788418_69788591_69790492
ENSMUSG00000054894.7_69771742_69790612_2	chr12	+	1199	5	NIC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	0	-820	intron_retention	FALSE	canonical	3	110	junction_1	42.1270400099509	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTGGTGTCACTATTAA	NA	False	NA	NA	False	ATTAAA	-16	NA	69771741	69790612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
ENSMUSG00000054894.7_69771742_69790612_3	chr12	+	776	6	NNC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	0	-820	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	79.2328214820096	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTGGTGTCACTATTAA	NA	False	NA	NA	False	ATTAAA	-16	NA	69771741	69790612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_69771793_69772215_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
ENSMUSG00000054894.7_69771742_69790612_4	chr12	+	759	6	FSM	ENSMUSG00000054894.7	ENSMUST00000220916.2	1599	6	18	822	0	-820	multi-exon	FALSE	canonical	3	32	junction_1	68.5787138987018	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTGGTGTCACTATTAA	NA	False	NA	NA	False	ATTAAA	-16	NA	69771741	69790612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_69771789_69772228_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
ENSMUSG00000054894.7_69771742_69790838_1	chr12	+	885	5	FSM	ENSMUSG00000054894.7	ENSMUST00000021372.6	1485	5	6	594	0	-594	multi-exon	FALSE	canonical	3	102	junction_1	45.2513811943901	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTTCTCATTGAGATAT	NA	False	NA	NA	False	AATACA	-21	NA	69771741	69790838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_69771789_69784724_69784836_69787672_69787882_69788418_69788591_69790492
ENSMUSG00000054894.7_69771742_69791434_1	chr12	+	2021	5	NIC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	110	junction_1	42.1270400099509	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGCTAGTCTTTACTT	NA	False	NA	4	True	AATAAA	-16	NA	69771741	69791434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
ENSMUSG00000054894.7_69771742_69791434_2	chr12	+	1598	6	NNC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	79.2328214820096	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGCTAGTCTTTACTT	NA	False	NA	4	True	AATAAA	-16	NA	69771741	69791434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_69771793_69772215_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
ENSMUSG00000055041.9_76784136_76785505_1	chr15	+	1034	2	FSM	ENSMUSG00000055041.9	ENSMUST00000109793.3	920	2	0	-114	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	2200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTATTCTATTAGGGAA	NA	False	NA	NA	False	ATTAAA	-23	NA	76784135	76785505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76784216_76784551
ENSMUSG00000055044.13_40210683_40259958_1	chr19	-	1403	7	FSM	ENSMUSG00000055044.13	ENSMUST00000068439.13	2571	7	102	1066	102	124	multi-exon	FALSE	canonical	3	193	junction_3	18.3938395484285	2342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGACCTCTTAGTTGAC	NA	False	NA	-18	True	AATAAA	-18	NA	40259958	40210682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_40211216_40211494_40211613_40218950_40219103_40231849_40232044_40238062_40238148_40240353_40240506_40259789
ENSMUSG00000055044.13_40210683_40260060_1	chr19	-	1505	7	FSM	ENSMUSG00000055044.13	ENSMUST00000068439.13	2571	7	0	1066	0	124	multi-exon	FALSE	canonical	3	193	junction_3	18.3938395484285	2347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGACCTCTTAGTTGAC	NA	False	NA	-18	True	AATAAA	-18	NA	40260060	40210682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_40211216_40211494_40211613_40218950_40219103_40231849_40232044_40238062_40238148_40240353_40240506_40259789
ENSMUSG00000055044.13_40210807_40259958_1	chr19	-	1279	7	FSM	ENSMUSG00000055044.13	ENSMUST00000068439.13	2571	7	102	1190	102	0	multi-exon	FALSE	canonical	3	193	junction_3	18.3938395484285	873	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGCACCTTCTTCACTTG	NA	False	NA	-142	True	NA	NA	NA	40259958	40210806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_40211216_40211494_40211613_40218950_40219103_40231849_40232044_40238062_40238148_40240353_40240506_40259789
ENSMUSG00000055067.16_178784815_178870008_1	chr1	-	532	3	NNC	ENSMUSG00000055067.16	novel	693	3	NA	NA	-53098	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	168.5	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCGACTTGGCTTTGCCT	NA	False	NA	-5	True	AATAAA	-26	NA	178870008	178784814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_178785128_178799752_178799862_178869898
ENSMUSG00000055067.16_178784815_178921967_1	chr1	-	967	7	ISM	ENSMUSG00000055067.16	ENSMUST00000068437.13	3360	9	154438	2204	-105057	0	3prime_fragment	FALSE	canonical	3	343	junction_1	12.7758452644912	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCGACTTGGCTTTGCCT	NA	False	NA	-5	True	AATAAA	-26	NA	178921967	178784814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_178785128_178799752_178799862_178871301_178871477_178877855_178877944_178913888_178914000_178920430_178920534_178921899
ENSMUSG00000055067.16_179232846_179345582_1	chr1	-	599	5	ISM	ENSMUSG00000055067.16	ENSMUST00000111134.2	1229	6	24	10057	-12	-10057	5prime_fragment	FALSE	canonical	3	351	junction_3	38.1338104573881	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTGAAGCTTCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	179345582	179232845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_179232985_179237971_179238030_179239242_179239351_179250919_179250984_179345352
ENSMUSG00000055067.16_179335469_179345582_1	chr1	-	1402	3	NNC	ENSMUSG00000055067.16	novel	1047	2	NA	NA	-12	403	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3.5	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAAACTGTCCTTTTTCTT	NA	False	NA	NA	False	AATAAA	-1	NA	179345582	179335468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_179335900_179335959_179336701_179345352
ENSMUSG00000055102.16_43256593_43267640_1	chr7	+	2392	5	NIC	ENSMUSG00000055102.16	novel	2362	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	25.6843824142221	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGCTTATTTTAAATACAC	2836	False	NA	7	True	AATAAA	-15	NA	43256592	43267640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_43256742_43259209_43259403_43261406_43261534_43261970_43262064_43265810
ENSMUSG00000055116.9_112894704_112913333_1	chr7	+	1665	9	ISM	ENSMUSG00000055116.9	ENSMUST00000211770.2	2464	20	60874	-286	-9923	0	3prime_fragment	FALSE	canonical	3	70	junction_1	14.6287388383278	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGTTCCCAATTGATAA	NA	False	NA	NA	False	AATAAA	-20	NA	112894703	112913333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_112894801_112898393_112898641_112900757_112900865_112902547_112902699_112903530_112903620_112905224_112905334_112907822_112907917_112912000_112912104_112912665
ENSMUSG00000055128.16_47069701_47091650_1	chr14	+	1205	6	FSM	ENSMUSG00000055128.16	ENSMUST00000068532.10	1324	6	119	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	10.2097992144802	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGACACTGTCTTTGTC	656	False	NA	14	True	AATAAA	-24	NA	47069700	47091650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_47069837_47077613_47077754_47083330_47083509_47083641_47083790_47090835_47090944_47091155
ENSMUSG00000055148.8_73072877_73073569_1	chr8	+	417	2	ISM	ENSMUSG00000055148.8	ENSMUST00000067912.8	1847	3	0	1931	0	-1931	5prime_fragment	FALSE	canonical	3	2987	junction_1	0	290	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGAGGTGGACGGCGGCGG	NA	False	NA	NA	False	NA	NA	NA	73072876	73073569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_73072994_73073269
ENSMUSG00000055148.8_73072877_73075195_1	chr8	+	725	2	NIC	ENSMUSG00000055148.8	novel	1847	3	NA	NA	0	-305	combination_of_known_splicesites	FALSE	canonical	3	215	junction_1	0	368	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGGTAGTGGTGTGGCTG	NA	False	NA	34	True	ATTAAA	-21	NA	73072876	73075195	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_73072994_73074587
ENSMUSG00000055150.16_6382922_6386050_1	chr7	+	596	3	NNC	ENSMUSG00000055150.16	novel	4675	4	NA	NA	8559	446	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGCCTCTGAGGAACT	NA	False	NA	NA	False	NA	NA	NA	6382921	6386050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_6383347_6385601_6385711_6385988
ENSMUSG00000055188.13_8005214_8011936_1	chrX	+	850	8	NNC	ENSMUSG00000055188.13	novel	839	3	NA	NA	-6454	-1979	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACTGCGGCGCGGGAAG	NA	False	NA	NA	False	NA	NA	NA	8005213	8011936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_8005418_8007359_8007448_8009489_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUSG00000055188.13_8008598_8011936_1	chrX	+	1145	7	NNC	ENSMUSG00000055188.13	novel	839	3	NA	NA	-3070	-1979	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACTGCGGCGCGGGAAG	NA	False	NA	NA	False	NA	NA	NA	8008597	8011936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_8009195_8009489_8009569_8009896_8009977_8010082_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUSG00000055188.13_8008598_8011936_10	chrX	+	1145	7	NNC	ENSMUSG00000055188.13	novel	839	3	NA	NA	-3070	-1979	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2230	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACTGCGGCGCGGGAAG	NA	False	NA	NA	False	NA	NA	NA	8008597	8011936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_8009195_8009485_8009569_8009896_8009991_8010086_8010187_8010811_8010905_8011193_8011312_8011876
ENSMUSG00000055188.13_8008598_8011936_11	chrX	+	1151	7	NNC	ENSMUSG00000055188.13	novel	839	3	NA	NA	-3070	-1979	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2869	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACTGCGGCGCGGGAAG	NA	False	NA	NA	False	NA	NA	NA	8008597	8011936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_8009195_8009489_8009572_8009903_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUSG00000055188.13_8008598_8011936_2	chrX	+	1780	6	NIC	ENSMUSG00000055188.13	novel	839	3	NA	NA	-3070	-1979	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACTGCGGCGCGGGAAG	NA	False	NA	NA	False	NA	NA	NA	8008597	8011936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_8009195_8009489_8009569_8009896_8009991_8010086_8010919_8011193_8011312_8011876
ENSMUSG00000055188.13_8008598_8011936_3	chrX	+	1453	6	NIC	ENSMUSG00000055188.13	novel	839	3	NA	NA	-3070	-1979	intron_retention	FALSE	non_canonical	0	0	junction_1	0	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACTGCGGCGCGGGAAG	NA	False	NA	NA	False	NA	NA	NA	8008597	8011936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUSG00000055188.13_8008598_8011936_4	chrX	+	1150	7	NNC	ENSMUSG00000055188.13	novel	839	3	NA	NA	-3070	-1979	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACTGCGGCGCGGGAAG	NA	False	NA	NA	False	NA	NA	NA	8008597	8011936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_8009195_8009489_8009569_8009896_8009982_8010082_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUSG00000055188.13_8008598_8011936_6	chrX	+	1653	7	NIC	ENSMUSG00000055188.13	novel	839	3	NA	NA	-3070	-1979	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACTGCGGCGCGGGAAG	NA	False	NA	NA	False	NA	NA	NA	8008597	8011936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_8009195_8009489_8009569_8009896_8009991_8010086_8010685_8010811_8010919_8011193_8011312_8011876
ENSMUSG00000055188.13_8008598_8011936_7	chrX	+	1143	7	NNC	ENSMUSG00000055188.13	novel	839	3	NA	NA	-3070	-1979	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1118	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACTGCGGCGCGGGAAG	NA	False	NA	NA	False	NA	NA	NA	8008597	8011936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_8009195_8009489_8009569_8009896_8009991_8010098_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUSG00000055188.13_8008598_8011936_9	chrX	+	1483	6	NIC	ENSMUSG00000055188.13	novel	839	3	NA	NA	-3070	-1979	intron_retention	FALSE	non_canonical	0	0	junction_1	0	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACTGCGGCGCGGGAAG	NA	False	NA	NA	False	NA	NA	NA	8008597	8011936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_8009195_8009489_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUSG00000055188.13_8009267_8011936_1	chrX	+	784	6	NIC	ENSMUSG00000055188.13	novel	839	3	NA	NA	-2401	-1979	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACTGCGGCGCGGGAAG	NA	False	NA	NA	False	NA	NA	NA	8009266	8011936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUSG00000055193.5_43581100_43589510_1	chr7	+	1335	6	NNC	ENSMUSG00000055193.5	novel	845	5	NA	NA	-2064	447	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2.5298221281347	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAAGCAGCTGGGCAG	1018	False	NA	NA	False	NA	NA	NA	43581099	43589510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_43581146_43583166_43583235_43586828_43586980_43587764_43588049_43588168_43588306_43588861
ENSMUSG00000055202.12_33015976_33028905_1	chr17	-	2210	4	FSM	ENSMUSG00000055202.12	ENSMUST00000200914.5	3536	4	0	1326	0	404	multi-exon	FALSE	canonical	3	5	junction_3	3.09120616516523	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGCCTAAT	4484	False	NA	NA	False	NA	NA	NA	33028905	33015975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_33017848_33019360_33019422_33019785_33019913_33028755
ENSMUSG00000055235.12_24917263_24935678_1	chr5	-	1790	6	FSM	ENSMUSG00000055235.12	ENSMUST00000068693.12	2364	6	47	527	0	0	multi-exon	FALSE	canonical	3	12	junction_3	2.85657137141714	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTTTGGTTTTCTTTT	NA	False	NA	-1	True	AATACA	-18	NA	24935678	24917262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_24917750_24917847_24917952_24920523_24920660_24922964_24923386_24927632_24927775_24935178
ENSMUSG00000055239.11_72819552_72826537_1	chr6	-	956	3	ISM	ENSMUSG00000055239.11	ENSMUST00000204598.3	1743	7	49738	0	-141	0	3prime_fragment	FALSE	canonical	3	1059	junction_2	68.5	1137	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGCTGTGTGTATTTAT	NA	False	NA	-84	True	NA	NA	NA	72826537	72819551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_72820114_72825207_72825491_72826426
ENSMUSG00000055239.11_72819867_72826537_1	chr6	-	641	3	ISM	ENSMUSG00000055239.11	ENSMUST00000204598.3	1743	7	49738	315	-141	101	3prime_fragment	FALSE	canonical	3	1059	junction_2	68.5	133	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTCCTCTTTGATGACC	NA	False	NA	-30	True	AATAAA	-16	NA	72826537	72819866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_72820114_72825207_72825491_72826426
ENSMUSG00000055240.18_33604388_33613579_1	chr17	-	1299	3	FSM	ENSMUSG00000055240.18	ENSMUST00000174512.4	6095	3	18	4778	0	293	multi-exon	FALSE	canonical	3	44	junction_1	2.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAACAAAAAAGGAACCTAA	NA	False	NA	NA	False	NA	NA	NA	33613579	33604387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_33605442_33605658_33605786_33613461
ENSMUSG00000055240.18_33604388_33613579_2	chr17	-	646	4	FSM	ENSMUSG00000055240.18	ENSMUST00000183047.2	353	4	0	-293	0	293	multi-exon	FALSE	canonical	1	2	junction_1	21.0765799460496	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAACAAAAAAGGAACCTAA	NA	False	NA	NA	False	NA	NA	NA	33613579	33604387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_33604743_33605395_33605442_33605658_33605786_33613461
ENSMUSG00000055302.6_36952211_36953765_1	chr5	-	1297	2	FSM	ENSMUSG00000055302.6	ENSMUST00000068795.4	1648	2	351	0	351	0	multi-exon	FALSE	canonical	3	1678	junction_1	0	1296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCCTGTGTTTAGTTTA	NA	False	NA	41	True	AAGAAA	-22	NA	36953765	36952210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_36953289_36953546
ENSMUSG00000055302.6_36952606_36954116_1	chr5	-	1253	2	FSM	ENSMUSG00000055302.6	ENSMUST00000068795.4	1648	2	0	395	0	-395	multi-exon	FALSE	canonical	3	1678	junction_1	0	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTGTAACCTGCCTGGT	NA	False	NA	NA	False	TTTAAA	-18	NA	36954116	36952605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_36953289_36953546
ENSMUSG00000055319.9_128346701_128385511_1	chr7	+	3422	19	FSM	ENSMUSG00000055319.9	ENSMUST00000042942.10	4505	19	34	1049	0	-1049	multi-exon	TRUE	canonical	3	121	junction_10	14.275615919341	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATGCAATATGTTATTTT	1965	False	NA	31	True	ATTAAA	-19	NA	128346700	128385511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_128346903_128351782_128352310_128354429_128354641_128355773_128355968_128357039_128357130_128359486_128359608_128363139_128363230_128364113_128364256_128365664_128365874_128367107_128367227_128367849_128368003_128369290_128369387_128373888_128374087_128378494_128378651_128379007_128379111_128380152_128380339_128380786_128380950_128381359_128381462_128385151
ENSMUSG00000055371.18_52583373_52632192_1	chr2	-	3000	14	FSM	ENSMUSG00000055371.18	ENSMUST00000102759.8	4717	14	20	1697	0	-1697	multi-exon	FALSE	canonical	3	181	junction_4	18.080359738789	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGAAATCTTATCGTTTA	NA	False	NA	-5	True	ATTAAA	-18	NA	52632192	52583372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_52584950_52590016_52590184_52593113_52593265_52596410_52596466_52597929_52598018_52598154_52598238_52599607_52599703_52604829_52605017_52605699_52605770_52606436_52606584_52609708_52609808_52609913_52609990_52610895_52610981_52632072
ENSMUSG00000055371.18_52584588_52632192_1	chr2	-	1785	14	FSM	ENSMUSG00000055371.18	ENSMUST00000102759.8	4717	14	20	2912	0	-2912	multi-exon	FALSE	canonical	3	181	junction_4	18.080359738789	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTGAAGGCCATAAAAGGT	NA	False	NA	NA	False	AATAAA	-23	NA	52632192	52584587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_52584950_52590016_52590184_52593113_52593265_52596410_52596466_52597929_52598018_52598154_52598238_52599607_52599703_52604829_52605017_52605699_52605770_52606436_52606584_52609708_52609808_52609913_52609990_52610895_52610981_52632072
ENSMUSG00000055401.15_148230173_148236448_1	chr4	-	1279	6	FSM	ENSMUSG00000055401.15	ENSMUST00000134261.2	811	6	-66	-402	-66	0	multi-exon	FALSE	canonical	3	174	junction_5	248.50786707869	2858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTTCATCCTGTTTG	NA	False	NA	54	True	NA	NA	NA	148236448	148230172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236286
ENSMUSG00000055401.15_148230245_148236386_1	chr4	-	1145	6	FSM	ENSMUSG00000055401.15	ENSMUST00000134261.2	811	6	-4	-330	-4	0	multi-exon	FALSE	canonical	3	174	junction_5	248.50786707869	1635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGTTTGAGGGCTTAC	NA	False	NA	-18	True	AATAAA	-16	NA	148236386	148230244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236286
ENSMUSG00000055401.15_148230245_148236597_1	chr4	-	1142	6	NNC	ENSMUSG00000055401.15	novel	952	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	335.767538633502	1818	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGTTTGAGGGCTTAC	NA	False	NA	-18	True	AATAAA	-16	NA	148236597	148230244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_148230612_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236469
ENSMUSG00000055401.15_148230245_148236597_2	chr4	-	1091	6	NNC	ENSMUSG00000055401.15	novel	1163	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_5	294.890895078163	1527	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGTTTGAGGGCTTAC	NA	False	NA	-18	True	AATAAA	-16	NA	148236597	148230244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236551
ENSMUSG00000055436.19_157716556_157718025_1	chr3	-	1364	2	FSM	ENSMUSG00000055436.19	ENSMUST00000145267.2	521	2	132	-975	132	0	multi-exon	TRUE	canonical	3	573	junction_1	0	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGCTTCTGTAGAGCTG	NA	False	NA	-27	True	AATAAA	-17	NA	157718025	157716555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_157717841_157717946
ENSMUSG00000055436.19_157716556_157742233_1	chr3	-	2638	13	FSM	ENSMUSG00000055436.19	ENSMUST00000069025.14	1643	13	-45	-950	0	0	multi-exon	FALSE	canonical	3	86	junction_3	173.80710492446	1155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGCTTCTGTAGAGCTG	NA	False	NA	-27	True	AATAAA	-17	NA	157742233	157716555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_157717841_157717946_157718086_157718416_157718534_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737286_157742152
ENSMUSG00000055436.19_157729695_157742233_1	chr3	-	586	4	ISM	ENSMUSG00000055436.19	ENSMUST00000126716.9	940	9	0	4667	0	-649	5prime_fragment	FALSE	canonical	3	21	junction_1	272.060042392606	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTAGTTTAATTGTATTA	NA	False	NA	NA	False	NA	NA	NA	157742233	157729694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_157729869_157732361_157732496_157737088_157737286_157742152
ENSMUSG00000055436.19_157735822_157742233_1	chr3	-	1545	2	FSM	ENSMUSG00000055436.19	ENSMUST00000197292.2	930	2	18	-633	0	0	multi-exon	FALSE	canonical	3	316	junction_1	0	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	157742233	157735821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_157737286_157742152
ENSMUSG00000055447.20_49676019_49731444_1	chr16	+	1310	10	FSM	ENSMUSG00000055447.20	ENSMUST00000084838.14	5250	10	11	3929	0	0	multi-exon	FALSE	canonical	3	19	junction_2	24.0960014099978	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49676018	49731444	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_49676196_49688127_49688476_49689380_49689444_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49731231
ENSMUSG00000055447.20_49676019_49731444_2	chr16	+	1247	9	NIC	ENSMUSG00000055447.20	novel	1271	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_8	11.8532695911297	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49676018	49731444	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49731231
ENSMUSG00000055447.20_49676019_49731444_3	chr16	+	1276	10	NIC	ENSMUSG00000055447.20	novel	1271	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	27.4352211222124	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49676018	49731444	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728446_49731231
ENSMUSG00000055531.13_117184757_117191961_1	chr10	-	738	2	ISM	ENSMUSG00000055531.13	ENSMUST00000176670.8	2227	11	20873	-190	0	187	3prime_fragment	FALSE	canonical	3	577	junction_1	0	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGCCCTTGATTTTGATA	NA	False	NA	0	True	ATTAAA	-19	NA	117191961	117184756	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_117185373_117191839
ENSMUSG00000055531.13_117184944_117191961_1	chr10	-	551	2	ISM	ENSMUSG00000055531.13	ENSMUST00000176670.8	2227	11	20873	-3	0	0	3prime_fragment	FALSE	canonical	3	577	junction_1	0	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTAAAGCTGTTCACGT	NA	False	NA	-9	True	AATAAA	-16	NA	117191961	117184943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_117185373_117191839
ENSMUSG00000055531.13_117202553_117212875_1	chr10	-	1473	2	ISM	ENSMUSG00000055531.13	ENSMUST00000177145.8	3819	9	-42	12843	0	-470	5prime_fragment	FALSE	canonical	3	603	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAGAAGAAGAAGA	4474	False	NA	NA	False	NA	NA	NA	117212875	117202552	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_117203894_117212743
ENSMUSG00000055553.17_70960916_70980312_1	chr8	-	807	7	FSM	ENSMUSG00000055553.17	ENSMUST00000138260.8	917	7	294	-184	121	6	multi-exon	FALSE	canonical	3	33	junction_6	10452.4158770433	22658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGGTGTCTAGAGTGAC	NA	False	NA	-7	True	AATAAA	-25	NA	70980312	70960915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70968044_70968092_70971014_70971168_70972586_70972712_70980294
ENSMUSG00000055553.17_70966046_70975754_1	chr8	-	1185	5	NNC	ENSMUSG00000055553.17	novel	1216	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	274.595156548691	2998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTATAGCAACAGTGGCT	NA	False	NA	-13	True	AATAAA	-20	NA	70975754	70966045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70966819_70968044_70968092_70970969_70971168_70972586_70972712_70975712
ENSMUSG00000055553.17_70966046_70975754_2	chr8	-	1064	5	NNC	ENSMUSG00000055553.17	novel	1216	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_2	265.155025409665	235	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTATAGCAACAGTGGCT	NA	False	NA	-13	True	AATAAA	-20	NA	70975754	70966045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70966819_70968044_70968092_70971090_70971168_70972586_70972712_70975712
ENSMUSG00000055553.17_70966046_70975754_3	chr8	-	1131	5	NNC	ENSMUSG00000055553.17	novel	1216	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	300.469112389277	3036	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTATAGCAACAGTGGCT	NA	False	NA	-13	True	AATAAA	-20	NA	70975754	70966045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70966810_70968044_70968092_70971014_70971168_70972586_70972712_70975712
ENSMUSG00000055553.17_70980397_70987978_1	chr8	-	1949	8	NIC	ENSMUSG00000055553.17	novel	917	7	NA	NA	-7372	-8676	intron_retention	FALSE	non_canonical	0	0	junction_1	0	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCGCCCCCGCGCACCC	NA	False	NA	NA	False	NA	NA	NA	70987978	70980396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984174_70984393_70985226_70985400_70986766_70986845_70987132
ENSMUSG00000055553.17_70980397_70987978_2	chr8	-	1950	8	NNC	ENSMUSG00000055553.17	novel	917	7	NA	NA	-7372	-8676	intron_retention	FALSE	non_canonical	0	0	junction_1	0	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCGCCCCCGCGCACCC	NA	False	NA	NA	False	NA	NA	NA	70987978	70980396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70980491_70982046_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132
ENSMUSG00000055553.17_70980397_70987978_3	chr8	-	1685	9	NNC	ENSMUSG00000055553.17	novel	917	7	NA	NA	-7372	-8676	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2861	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCGCCCCCGCGCACCC	NA	False	NA	NA	False	NA	NA	NA	70987978	70980396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70980472_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ENSMUSG00000055553.17_70980496_70987976_1	chr8	-	1717	9	NNC	ENSMUSG00000055553.17	novel	917	7	NA	NA	-7370	-8775	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	853	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACACGTGCCTGCGGCTCGG	NA	False	NA	NA	False	NA	NA	NA	70987976	70980495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70980605_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ENSMUSG00000055560.9_67555677_67569537_1	chr13	-	1485	4	FSM	ENSMUSG00000055560.9	ENSMUST00000056470.10	3334	4	0	1849	0	906	multi-exon	FALSE	canonical	3	28	junction_1	6.23609564462324	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGAAGTGTGATAAAGCCT	NA	False	NA	-24	True	NA	NA	NA	67569537	67555676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_67556862_67561226_67561323_67561952_67562080_67569460
ENSMUSG00000055612.16_72306503_72309756_1	chr2	+	660	2	ISM	ENSMUSG00000055612.16	ENSMUST00000157019.2	614	5	-94	3085	0	-2448	5prime_fragment	FALSE	canonical	3	1379	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAAAAAAAAATCCACAT	8569	False	NA	NA	False	NA	NA	NA	72306502	72309756	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_72306656_72309249
ENSMUSG00000055612.16_72306597_72317237_1	chr2	+	2309	10	NNC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	399.431818684713	2671	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTTTATTTTTGTTT	8663	False	NA	NA	False	AATAAA	-16	NA	72306596	72317237	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_72306656_72309249_72309373_72312034_72312206_72312226_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
ENSMUSG00000055629.6_140648508_140652313_1	chr7	+	1364	7	ISM	ENSMUSG00000055629.6	ENSMUST00000209546.2	3076	16	4101	0	-1680	0	3prime_fragment	FALSE	canonical	3	132	junction_1	32.7503180646133	177	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTTCTGTGAGTGTTC	NA	False	NA	24	True	AATGAA	-25	NA	140648507	140652313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_140648675_140650323_140650608_140650700_140650855_140650954_140651028_140651120_140651275_140651549_140651677_140651908
ENSMUSG00000055629.6_140650188_140652313_1	chr7	+	1333	6	ISM	ENSMUSG00000055629.6	ENSMUST00000209546.2	3076	16	5781	0	0	0	3prime_fragment	FALSE	canonical	3	186	junction_1	17.8706463229509	138	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTTCTGTGAGTGTTC	NA	False	NA	24	True	AATGAA	-25	NA	140650187	140652313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_140650608_140650700_140650855_140650954_140651028_140651120_140651275_140651549_140651677_140651908
ENSMUSG00000055653.14_51671324_51702827_1	chrX	-	830	2	ISM	ENSMUSG00000055653.14	ENSMUST00000114857.2	1880	5	0	194783	0	-194783	5prime_fragment	FALSE	canonical	3	258	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAGAAAAAGTGGATAG	NA	False	NA	NA	False	NA	NA	NA	51702827	51671323	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_51671836_51702509
ENSMUSG00000055660.10_95034513_95055537_1	chr17	-	1681	8	ISM	ENSMUSG00000055660.10	ENSMUST00000234990.2	6640	9	1783	4495	1783	0	3prime_fragment	FALSE	canonical	3	71	junction_6	15.5261464790783	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTTATAGTGAGTCTCT	NA	False	NA	NA	False	AATATA	-16	NA	95055537	95034512	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95051359_95051423_95055044
ENSMUSG00000055681.15_70755419_70765640_1	chr8	+	1049	10	FSM	ENSMUSG00000055681.15	ENSMUST00000066469.14	1300	10	251	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_3	49.1055803823899	8431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	703	False	NA	26	True	AATAAA	-15	NA	70755418	70765640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
ENSMUSG00000055681.15_70755446_70765640_1	chr8	+	1022	10	FSM	ENSMUSG00000055681.15	ENSMUST00000066469.14	1300	10	278	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_3	49.1055803823899	8268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	730	False	NA	26	True	AATAAA	-15	NA	70755445	70765640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
ENSMUSG00000055692.22_17094173_17096525_1	chr16	+	1535	9	NNC	ENSMUSG00000055692.22	novel	1631	10	NA	NA	0	0	intron_retention	TRUE	canonical	3	43	junction_7	79.7071789426774	314	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094172	17096525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_17094333_17094497_17094622_17094700_17094752_17094825_17095115_17095205_17095266_17095391_17095457_17095532_17095588_17095714_17095756_17095835
ENSMUSG00000055692.22_17094173_17096525_2	chr16	+	1381	10	NNC	ENSMUSG00000055692.22	novel	1631	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_8	80.0083328993508	538	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094172	17096525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_17094333_17094497_17094622_17094700_17094752_17094825_17094904_17095057_17095115_17095205_17095266_17095391_17095457_17095532_17095588_17095714_17095756_17095835
ENSMUSG00000055692.22_17094173_17096525_3	chr16	+	1706	7	NIC	ENSMUSG00000055692.22	novel	1627	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	186	junction_5	33.1331488928468	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094172	17096525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_17094333_17094497_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
ENSMUSG00000055692.22_17094173_17096525_4	chr16	+	1632	8	NIC	ENSMUSG00000055692.22	novel	1631	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	132	junction_2	51.6732275843071	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094172	17096525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_17094333_17094497_17094752_17094825_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
ENSMUSG00000055692.22_17094173_17101093_1	chr16	+	1352	8	NIC	ENSMUSG00000055692.22	novel	1627	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	40	junction_7	76.8576739227536	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTCTTCTTTGGGATCA	NA	False	NA	11	True	AATAAA	-22	NA	17094172	17101093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_17094333_17094497_17094622_17094700_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17100678
ENSMUSG00000055692.22_17094173_17101093_2	chr16	+	1124	10	NIC	ENSMUSG00000055692.22	novel	1631	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_9	75.4607248020738	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTCTTCTTTGGGATCA	NA	False	NA	11	True	AATAAA	-22	NA	17094172	17101093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_17094333_17094497_17094622_17094700_17094752_17094825_17094904_17095057_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17100678
ENSMUSG00000055692.22_17094212_17096070_1	chr16	+	905	10	FSM	ENSMUSG00000055692.22	ENSMUST00000164950.11	1631	10	271	455	0	1	multi-exon	FALSE	canonical	3	122	junction_4	58.6725586266908	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGTCTCCTTTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	17094211	17096070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_17094333_17094497_17094622_17094700_17094752_17094825_17094904_17095057_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
ENSMUSG00000055692.22_17094212_17096525_1	chr16	+	1360	10	FSM	ENSMUSG00000055692.22	ENSMUST00000164950.11	1631	10	271	0	0	0	multi-exon	FALSE	canonical	3	122	junction_4	58.6725586266908	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094211	17096525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_17094333_17094497_17094622_17094700_17094752_17094825_17094904_17095057_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
ENSMUSG00000055692.22_17094212_17096525_2	chr16	+	1434	9	NIC	ENSMUSG00000055692.22	novel	1631	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	122	junction_3	53.7680202350803	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094211	17096525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_17094333_17094497_17094622_17094700_17094904_17095057_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
ENSMUSG00000055692.22_17094945_17101093_1	chr16	+	933	5	NIC	ENSMUSG00000055692.22	novel	781	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	40	junction_4	94.9183859955488	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTCTTCTTTGGGATCA	NA	False	NA	11	True	AATAAA	-22	NA	17094944	17101093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_17095115_17095205_17095266_17095391_17095457_17095532_17095756_17100678
ENSMUSG00000055692.22_17094959_17096525_1	chr16	+	1320	4	FSM	ENSMUSG00000055692.22	ENSMUST00000232636.2	825	4	0	-495	0	0	multi-exon	FALSE	canonical	3	265	junction_2	6.12825877028341	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094958	17096525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_17095115_17095205_17095457_17095532_17095756_17095835
ENSMUSG00000055692.22_17094959_17101093_1	chr16	+	1045	4	NIC	ENSMUSG00000055692.22	novel	781	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	40	junction_3	108.001028801684	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTCTTCTTTGGGATCA	NA	False	NA	11	True	AATAAA	-22	NA	17094958	17101093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_17095115_17095205_17095457_17095532_17095756_17100678
ENSMUSG00000055720.11_57818269_57837251_1	chr9	+	1304	11	NNC	ENSMUSG00000055720.11	novel	1319	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	93.8200405030823	1210	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818268	57837251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_57818291_57819928_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUSG00000055720.11_57818269_57837251_2	chr9	+	1356	11	NNC	ENSMUSG00000055720.11	novel	1364	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	93.8200405030823	1972	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818268	57837251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_57818343_57819928_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUSG00000055720.11_57818334_57837251_1	chr9	+	1527	12	NNC	ENSMUSG00000055720.11	novel	1426	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	98.2042903575404	1998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818333	57837251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_57818455_57818992_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUSG00000055723.7_113646805_113716675_1	chr7	-	1146	6	FSM	ENSMUSG00000055723.7	ENSMUST00000069449.7	2275	6	341	788	324	-785	multi-exon	FALSE	canonical	3	204	junction_1	27.4779911929529	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGTTATCATGCTTCC	NA	False	NA	-12	True	ATTAAA	-14	NA	113716675	113646804	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_113647487_113649535_113649655_113657774_113657884_113658161_113658265_113659566_113659655_113716630
ENSMUSG00000055760.13_80531870_80533664_1	chr17	+	845	2	ISM	ENSMUSG00000055760.13	ENSMUST00000156869.2	668	3	0	583	0	-583	5prime_fragment	FALSE	canonical	3	317	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGGACTGAAGGTA	NA	False	NA	NA	False	NA	NA	NA	80531869	80533664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_80532100_80533049
ENSMUSG00000055760.13_80531870_80535636_1	chr17	+	844	3	FSM	ENSMUSG00000055760.13	ENSMUST00000069486.13	1134	3	0	290	0	-290	multi-exon	FALSE	canonical	3	317	junction_1	34	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGGGTTATAGGTGTGT	NA	False	NA	NA	False	NA	NA	NA	80531869	80535636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_80532100_80533049_80533194_80535166
ENSMUSG00000055762.17_75767337_75781155_1	chr15	-	978	8	NNC	ENSMUSG00000055762.17	novel	2312	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1091.82356352918	21530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781155	75767336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_75767435_75767576_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781093
ENSMUSG00000055762.17_75767337_75781155_2	chr15	-	1037	9	NIC	ENSMUSG00000055762.17	novel	2842	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_5	1349.65903101487	21687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781155	75767336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75769074_75769132_75772539_75772612_75772980_75773105_75781093
ENSMUSG00000055762.17_75767337_75781155_3	chr15	-	980	8	FSM	ENSMUSG00000055762.17	ENSMUST00000154584.9	2312	8	49	1283	0	0	multi-exon	FALSE	canonical	3	2715	junction_5	241.1927842695	28492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781155	75767336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781093
ENSMUSG00000055817.19_84013620_84100304_1	chr17	+	1693	14	NNC	ENSMUSG00000055817.19	novel	1728	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	346.29923442496	775	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTTTGTTTTTTTTTTT	NA	False	NA	12	True	AATAAA	-17	NA	84013619	84100304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061289_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096346_84096472_84099081_84099231_84099970
ENSMUSG00000055850.13_72336697_72339376_1	chr6	-	1392	5	NNC	ENSMUSG00000055850.13	novel	1434	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	413.628154264189	1802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8447	False	NA	NA	False	TATAAA	-15	NA	72339376	72336696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_72337618_72337852_72337933_72338099_72338210_72338394_72338523_72339223
ENSMUSG00000055850.13_72336697_72339376_2	chr6	-	1387	5	NNC	ENSMUSG00000055850.13	novel	1434	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_1	389.700205286063	1284	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8447	False	NA	NA	False	TATAAA	-15	NA	72339376	72336696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_72337618_72337857_72337933_72338099_72338210_72338394_72338523_72339223
ENSMUSG00000055850.13_72336697_72339376_3	chr6	-	1360	5	NIC	ENSMUSG00000055850.13	novel	1434	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_4	391.378652969219	996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8447	False	NA	NA	False	TATAAA	-15	NA	72339376	72336696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_72337626_72337857_72337933_72338099_72338210_72338394_72338523_72339258
ENSMUSG00000055850.13_72337228_72339376_1	chr6	-	864	5	FSM	ENSMUSG00000055850.13	ENSMUST00000069580.12	1434	5	39	531	0	0	multi-exon	FALSE	canonical	3	875	junction_2	66.4266512779321	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCGGAAATCTCTAGTTA	8447	False	NA	-6	True	GATAAA	-18	NA	72339376	72337227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72338394_72338523_72339223
ENSMUSG00000055850.13_72337401_72339376_1	chr6	-	691	5	FSM	ENSMUSG00000055850.13	ENSMUST00000069580.12	1434	5	39	704	0	0	multi-exon	FALSE	canonical	3	875	junction_2	66.4266512779321	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCGAAGGTGCCA	8447	False	NA	NA	False	NA	NA	NA	72339376	72337400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72338394_72338523_72339223
ENSMUSG00000055884.9_65122381_65134204_1	chr12	+	870	4	NNC	ENSMUSG00000055884.9	novel	4050	11	NA	NA	0	-6654	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_3	59.9462722406953	422	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGATTAAAAAGCAAAAGGA	9284	False	NA	NA	False	NA	NA	NA	65122380	65134204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_65122952_65123815_65123989_65129805_65129884_65134156
ENSMUSG00000055897.14_173437899_173501332_2	chr2	-	883	6	NIC	ENSMUSG00000055897.14	novel	755	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	5.17687164221791	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAAATTGTCTCTTTCT	NA	False	NA	NA	False	ATTAAA	-9	NA	173501332	173437898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_173438321_173438832_173438981_173450525_173450673_173457275_173457370_173501115_173501161_173501305
ENSMUSG00000055900.15_116409316_116413140_1	chr4	-	1155	4	NNC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	-7	-214	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27.6204433144888	913	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTCAAAGTAACTTATT	NA	False	NA	NA	False	NA	NA	NA	116413140	116409315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_116409420_116410082_116410927_116411964_116412101_116413069
ENSMUSG00000055912.9_72336697_72339376_1	chr6	+	1387	5	NNC	ENSMUSG00000055912.9	novel	1478	7	NA	NA	3488	2631	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2077	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTTTAGGTTGCCGCTG	NA	False	NA	NA	False	NA	NA	NA	72336696	72339376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_72337626_72337857_72337933_72338099_72338202_72338394_72338523_72339223
ENSMUSG00000055912.9_72336697_72339376_10	chr6	+	1400	5	NNC	ENSMUSG00000055912.9	novel	1478	7	NA	NA	3488	2631	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4045	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTTTAGGTTGCCGCTG	NA	False	NA	NA	False	NA	NA	NA	72336696	72339376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_72337626_72337852_72337933_72338099_72338210_72338394_72338523_72339223
ENSMUSG00000055912.9_72336697_72339376_2	chr6	+	1390	5	NIC	ENSMUSG00000055912.9	novel	1478	7	NA	NA	3488	2631	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	4414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTTTAGGTTGCCGCTG	NA	False	NA	NA	False	NA	NA	NA	72336696	72339376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_72337626_72337857_72337933_72338104_72338210_72338394_72338523_72339223
ENSMUSG00000055912.9_72336697_72339376_3	chr6	+	1592	4	NIC	ENSMUSG00000055912.9	novel	1478	7	NA	NA	3488	2631	intron_retention	FALSE	non_canonical	0	0	junction_1	0	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTTTAGGTTGCCGCTG	NA	False	NA	NA	False	NA	NA	NA	72336696	72339376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_72337933_72338099_72338210_72338394_72338523_72339258
ENSMUSG00000055912.9_72336697_72339376_4	chr6	+	1380	5	NNC	ENSMUSG00000055912.9	novel	1478	7	NA	NA	3488	2631	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	784	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTTTAGGTTGCCGCTG	NA	False	NA	NA	False	NA	NA	NA	72336696	72339376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_72337626_72337857_72337933_72338099_72338210_72338409_72338523_72339223
ENSMUSG00000055912.9_72336697_72339376_5	chr6	+	1267	4	NIC	ENSMUSG00000055912.9	novel	1478	7	NA	NA	3488	2631	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTTTAGGTTGCCGCTG	NA	False	NA	NA	False	NA	NA	NA	72336696	72339376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_72337626_72337857_72337933_72338099_72338210_72339223
ENSMUSG00000055912.9_72336697_72339376_6	chr6	+	1403	5	NNC	ENSMUSG00000055912.9	novel	1478	7	NA	NA	3488	2631	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTTTAGGTTGCCGCTG	NA	False	NA	NA	False	NA	NA	NA	72336696	72339376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_72337626_72337857_72337933_72338099_72338210_72338394_72338523_72339215
ENSMUSG00000055912.9_72336697_72339376_7	chr6	+	2096	4	NIC	ENSMUSG00000055912.9	novel	1478	7	NA	NA	3488	2631	intron_retention	FALSE	non_canonical	0	0	junction_1	0	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTTTAGGTTGCCGCTG	NA	False	NA	NA	False	NA	NA	NA	72336696	72339376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_72337626_72337857_72337933_72338099_72338210_72338394
ENSMUSG00000055912.9_72336697_72339376_8	chr6	+	1382	5	NNC	ENSMUSG00000055912.9	novel	1478	7	NA	NA	3488	2631	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	921	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTTTAGGTTGCCGCTG	NA	False	NA	NA	False	NA	NA	NA	72336696	72339376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_72337618_72337857_72337933_72338104_72338210_72338394_72338523_72339223
ENSMUSG00000055912.9_72336697_72339376_9	chr6	+	1352	5	NNC	ENSMUSG00000055912.9	novel	1478	7	NA	NA	3488	2631	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	364	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTTTAGGTTGCCGCTG	NA	False	NA	NA	False	NA	NA	NA	72336696	72339376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_72337618_72337857_72337933_72338099_72338210_72338394_72338523_72339258
ENSMUSG00000055923.17_77043950_77053339_1	chr5	-	1219	5	FSM	ENSMUSG00000055923.17	ENSMUST00000154548.8	1080	5	0	-139	0	139	multi-exon	FALSE	canonical	3	29	junction_4	25.8891869319992	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTGTGTGTGTGTATG	NA	False	NA	NA	False	AATAAA	-18	NA	77053339	77043949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053269
ENSMUSG00000055923.17_77044089_77053339_1	chr5	-	1134	6	ISM	ENSMUSG00000055923.17	ENSMUST00000146570.8	2264	13	-5	13425	0	0	5prime_fragment	FALSE	canonical	3	18	junction_5	32.6521055982612	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAATCTTATATTT	NA	False	NA	NA	False	AAAACA	-5	NA	77053339	77044088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77052805_77052860_77053269
ENSMUSG00000055926.4_119002981_119039276_1	chr2	+	1241	12	Fusion	ENSMUSG00000068580.12_ENSMUSG00000055926.4	novel	2008	11	NA	NA	-2009	-1745	multi-exon	FALSE	non_canonical	0	0	junction_1	0	104	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCCCAGGAGTCTGAGCG	5935	False	NA	NA	False	NA	NA	NA	119002980	119039276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_+_119003167_119005391_119005623_119009832_119009944_119010365_119010447_119010967_119011046_119011406_119011447_119014073_119014177_119014397_119014484_119016176_119016265_119016509_119016569_119016826_119016897_119039168
ENSMUSG00000055943.6_112285342_112297780_1	chr2	+	938	5	NNC	ENSMUSG00000055943.6	novel	5826	5	NA	NA	0	-4727	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_1	188.575415948103	988	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAAGATTATCTTCTGT	360	False	NA	2	True	ATTAAA	-15	NA	112285341	112297780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_112285485_112289804_112289925_112293145_112293285_112295081_112295163_112297325
ENSMUSG00000055943.6_112285342_112297780_2	chr2	+	1099	5	FSM	ENSMUSG00000055943.6	ENSMUST00000069747.6	5826	5	0	4727	0	-4727	multi-exon	FALSE	canonical	3	432	junction_1	48.4355241532493	4956	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAAGATTATCTTCTGT	360	False	NA	2	True	ATTAAA	-15	NA	112285341	112297780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_112285646_112289804_112289925_112293145_112293285_112295081_112295163_112297325
ENSMUSG00000055943.6_112285342_112297780_3	chr2	+	1094	5	NNC	ENSMUSG00000055943.6	novel	5826	5	NA	NA	0	-4727	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	221.363953705205	4738	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAAGATTATCTTCTGT	360	False	NA	2	True	ATTAAA	-15	NA	112285341	112297780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_112285646_112289809_112289925_112293145_112293285_112295081_112295163_112297325
ENSMUSG00000055943.6_112285342_112297780_4	chr2	+	1127	5	NNC	ENSMUSG00000055943.6	novel	5826	5	NA	NA	0	-4727	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	216.128867808074	4290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAAGATTATCTTCTGT	360	False	NA	2	True	ATTAAA	-15	NA	112285341	112297780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_112285646_112289804_112289925_112293117_112293285_112295081_112295163_112297325
ENSMUSG00000055963.13_12906838_12981478_1	chr4	+	1493	5	FSM	ENSMUSG00000055963.13	ENSMUST00000143186.8	888	5	0	-605	0	408	multi-exon	FALSE	canonical	3	8	junction_2	1.6393596310755	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTCACATGTTACTTTTA	36	False	NA	NA	False	AATAAA	-14	NA	12906837	12981478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_12906939_12917915_12918066_12962941_12963024_12974729_12974816_12980404
ENSMUSG00000056050.16_183107934_183126957_1	chr1	-	2825	23	NIC	ENSMUSG00000056050.16	novel	6330	28	NA	NA	0	-252	combination_of_known_junctions	FALSE	canonical	3	85	junction_22	21.1026613025369	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGCATATGTAATGATTG	NA	False	NA	-3	True	AATAAA	-21	NA	183126957	183107933	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_183108509_183109058_183109201_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183126628
ENSMUSG00000056076.14_140428074_140429115_1	chr5	+	605	2	ISM	ENSMUSG00000056076.14	ENSMUST00000100507.8	2945	19	22991	0	2377	0	3prime_fragment	FALSE	canonical	3	3947	junction_1	0	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCTGTCCTGATCTCTT	8648	False	NA	15	True	AATAAA	-16	NA	140428073	140429115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_140428192_140428628
ENSMUSG00000056131.14_86437054_86453855_2	chr9	-	2008	13	NNC	ENSMUSG00000056131.14	novel	2666	13	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	138.247639119886	146	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTTTCGATTGCTTACC	NA	False	NA	-2	True	ATTAAA	-20	NA	86453855	86437053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_86437457_86438244_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443882_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
ENSMUSG00000056131.14_86437054_86453906_1	chr9	-	2063	13	NNC	ENSMUSG00000056131.14	novel	2666	13	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	137.476967767938	623	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTTTCGATTGCTTACC	NA	False	NA	-2	True	ATTAAA	-20	NA	86453906	86437053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_86437452_86438244_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
ENSMUSG00000056131.14_86437054_86453906_2	chr9	-	2068	13	FSM	ENSMUSG00000056131.14	ENSMUST00000070064.11	2666	13	-26	624	-11	0	multi-exon	FALSE	canonical	3	372	junction_7	43.7311070317483	963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTTTCGATTGCTTACC	NA	False	NA	-2	True	ATTAAA	-20	NA	86453906	86437053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_86437457_86438244_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
ENSMUSG00000056167.9_114415171_114469142_1	chr9	-	2592	19	NIC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	0	-137	combination_of_known_splicesites	FALSE	canonical	3	267	junction_4	76.1876338755546	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTGTTGTTGGTTTG	NA	False	NA	-14	True	TATAAA	-16	NA	114469142	114415170	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ENSMUSG00000056167.9_114415171_114469253_1	chr9	-	2703	19	NIC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	-1	-137	combination_of_known_splicesites	FALSE	canonical	3	267	junction_4	76.1876338755546	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTGTTGTTGGTTTG	NA	False	NA	-14	True	TATAAA	-16	NA	114469253	114415170	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ENSMUSG00000056185.6_5540544_5544059_1	chr19	-	1108	4	NNC	ENSMUSG00000056185.6	novel	2229	12	NA	NA	3334	1719	intron_retention	FALSE	non_canonical	0	0	junction_1	0	8426	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCCCGGCCCCTTCCGTT	NA	False	NA	NA	False	NA	NA	NA	5544059	5540543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_5540616_5542524_5542833_5543182_5543260_5543408
ENSMUSG00000056185.6_5540544_5544059_2	chr19	-	1115	4	NNC	ENSMUSG00000056185.6	novel	2229	12	NA	NA	3334	1719	intron_retention	FALSE	non_canonical	0	0	junction_1	0	8461	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCCCGGCCCCTTCCGTT	NA	False	NA	NA	False	NA	NA	NA	5544059	5540543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_5540631_5542524_5542833_5543182_5543260_5543416
ENSMUSG00000056185.6_5540544_5544059_3	chr19	-	1102	4	NNC	ENSMUSG00000056185.6	novel	2229	12	NA	NA	3334	1719	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2109	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCCCGGCCCCTTCCGTT	NA	False	NA	NA	False	NA	NA	NA	5544059	5540543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_5540631_5542524_5542833_5543182_5543260_5543429
ENSMUSG00000056185.6_5540544_5544059_4	chr19	-	1102	5	NNC	ENSMUSG00000056185.6	novel	2229	12	NA	NA	3334	1719	intron_retention	TRUE	non_canonical	0	0	junction_1	0	5117	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCCCGGCCCCTTCCGTT	NA	False	NA	NA	False	NA	NA	NA	5544059	5540543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_5540631_5542524_5542663_5542683_5542833_5543182_5543260_5543408
ENSMUSG00000056185.6_5540544_5544059_5	chr19	-	465	3	NNC	ENSMUSG00000056185.6	novel	2229	12	NA	NA	3334	1719	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	328	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCCCGGCCCCTTCCGTT	NA	False	NA	NA	False	NA	NA	NA	5544059	5540543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_5540631_5542524_5542735_5543891
ENSMUSG00000056185.6_5540544_5544059_6	chr19	-	1118	4	NNC	ENSMUSG00000056185.6	novel	2229	12	NA	NA	3334	1719	intron_retention	FALSE	non_canonical	0	0	junction_1	0	34093	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCCCGGCCCCTTCCGTT	NA	False	NA	NA	False	NA	NA	NA	5544059	5540543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_5540631_5542524_5542833_5543187_5543260_5543408
ENSMUSG00000056185.6_5540544_5544059_7	chr19	-	1111	4	NNC	ENSMUSG00000056185.6	novel	2229	12	NA	NA	3334	1719	intron_retention	FALSE	non_canonical	0	0	junction_1	0	10866	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCCCGGCCCCTTCCGTT	NA	False	NA	NA	False	NA	NA	NA	5544059	5540543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_5540631_5542524_5542821_5543182_5543260_5543408
ENSMUSG00000056185.6_5540544_5544059_8	chr19	-	980	4	NNC	ENSMUSG00000056185.6	novel	2229	12	NA	NA	3334	1719	intron_retention	FALSE	non_canonical	0	0	junction_1	0	652	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCCCGGCCCCTTCCGTT	NA	False	NA	NA	False	NA	NA	NA	5544059	5540543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_5540631_5542524_5542690_5543182_5543260_5543408
ENSMUSG00000056185.6_5540544_5544059_9	chr19	-	510	3	NNC	ENSMUSG00000056185.6	novel	2229	12	NA	NA	3334	1719	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	428	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCCCGGCCCCTTCCGTT	NA	False	NA	NA	False	NA	NA	NA	5544059	5540543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_5540631_5542524_5542741_5543852
ENSMUSG00000056201.9_5540544_5544059_1	chr19	+	1113	4	NNC	ENSMUSG00000056201.9	novel	2354	4	NA	NA	0	2	intron_retention	FALSE	canonical	0	0	junction_2	2951.60171206528	16301	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	14	True	NA	NA	NA	5540543	5544059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_5540631_5542524_5542833_5543192_5543260_5543408
ENSMUSG00000056201.9_5540544_5544059_2	chr19	+	1123	4	FSM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	61	1170	0	2	multi-exon	FALSE	canonical	3	6173	junction_3	71.2850303749361	43911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	14	True	NA	NA	NA	5540543	5544059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408
ENSMUSG00000056209.8_45736173_45738003_1	chr19	-	856	6	NNC	ENSMUSG00000056209.8	novel	888	6	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	109.33508128684	5885	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTGGCTTTTTCAA	4914	False	NA	0	True	AATAAA	-27	NA	45738003	45736172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_45736486_45736602_45736720_45736984_45737079_45737188_45737309_45737495_45737582_45737877
ENSMUSG00000056209.8_45736281_45738003_1	chr19	-	753	6	FSM	ENSMUSG00000056209.8	ENSMUST00000070215.8	888	6	27	108	-15	-108	multi-exon	FALSE	canonical	3	216	junction_3	39.9229257444892	2042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAACAAAAAACAAAAG	4914	False	NA	-108	True	NA	NA	NA	45738003	45736280	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495_45737582_45737877
ENSMUSG00000056228.11_11564021_11580427_1	chr8	-	1142	9	ISM	ENSMUSG00000056228.11	ENSMUST00000210478.2	2007	15	20314	0	-10041	0	3prime_fragment	FALSE	canonical	3	186	junction_7	21.2940719450273	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTAAAGTGGGCCTATG	NA	False	NA	-60	True	ATTAAA	-25	NA	11580427	11564020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_11564192_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294
ENSMUSG00000056234.16_31881895_31901205_1	chr14	+	3385	10	FSM	ENSMUSG00000056234.16	ENSMUST00000163336.8	4065	10	73	607	0	1	multi-exon	TRUE	canonical	3	533	junction_6	51.0289194210886	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCAGTTGTGTTTGTGTTA	NA	False	NA	-1	True	ATTAAA	-14	NA	31881894	31901205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_31881968_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895_31898913_31899189_31899331_31899779
ENSMUSG00000056260.16_106592303_106643893_1	chr3	+	1602	3	FSM	ENSMUSG00000056260.16	ENSMUST00000098751.10	929	3	0	-673	0	0	multi-exon	FALSE	canonical	3	7	junction_1	16.5	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTATGGCTTTGTTTTGT	NA	False	NA	31	True	AATAAA	-43	NA	106592302	106643893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_106592450_106641673_106641956_106642720
ENSMUSG00000056267.15_99125495_99145854_1	chr9	+	537	5	NIC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	0	39	combination_of_known_splicesites	FALSE	canonical	3	26	junction_2	141.593387910594	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTACAGGTATTGTATTGA	NA	False	NA	NA	False	AATAAA	-24	NA	99125494	99145854	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_99125544_99128319_99128420_99144598_99144690_99144878_99145003_99145681
ENSMUSG00000056267.15_99125495_99145854_2	chr9	+	660	6	FSM	ENSMUSG00000056267.15	ENSMUST00000190715.7	1768	6	-19	1127	0	39	multi-exon	FALSE	canonical	3	228	junction_1	56.4361586219332	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTACAGGTATTGTATTGA	NA	False	NA	NA	False	AATAAA	-24	NA	99125494	99145854	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681
ENSMUSG00000056267.15_99125495_99146983_1	chr9	+	590	4	NNC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	153.153517752613	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTCTTGGTCATCATGT	NA	False	NA	9	True	NA	NA	NA	99125494	99146983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_99125544_99128319_99128420_99136307_99136431_99146665
ENSMUSG00000056267.15_99125495_99146983_3	chr9	+	1833	6	FSM	ENSMUSG00000056267.15	ENSMUST00000185799.7	740	6	75	-1168	0	2	multi-exon	TRUE	canonical	3	66	junction_1	121.109867475776	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTCTTGGTCATCATGT	NA	False	NA	9	True	NA	NA	NA	99125494	99146983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681
ENSMUSG00000056267.15_99125495_99182457_1	chr9	+	2650	18	NIC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	66	junction_1	83.1088001619555	611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	18	True	AATAAA	-23	NA	99125494	99182457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
ENSMUSG00000056300.15_146289371_146627265_1	chr4	+	954	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-297113	3413	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_4	148.132542002087	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	2312	False	NA	NA	False	NA	NA	NA	146289370	146627265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146289526_146597241_146597335_146616526_146616611_146619877_146620005_146626770
ENSMUSG00000056300.15_146289371_146627265_2	chr4	+	1034	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-297113	3413	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	149.231900075017	663	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	2312	False	NA	NA	False	NA	NA	NA	146289370	146627265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146289526_146597241_146597335_146603534_146603615_146616526_146616611_146619877_146620005_146626770
ENSMUSG00000056300.15_146426583_146627265_1	chr4	+	838	4	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159901	3413	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	190.482428469283	373	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146426582	146627265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146426715_146616526_146616611_146619877_146620005_146626770
ENSMUSG00000056300.15_146426583_146627265_3	chr4	+	937	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159901	3413	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	171.408867915286	299	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146426582	146627265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146426715_146616526_146616611_146619877_146620005_146621233_146621333_146626770
ENSMUSG00000056300.15_146586484_146621336_1	chr4	+	525	5	FSM	ENSMUSG00000056300.15	ENSMUST00000105735.9	3038	5	0	2513	0	-141	multi-exon	FALSE	canonical	3	87	junction_2	129.101462036648	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCTTAGTAATGTGATTC	NA	False	NA	NA	False	NA	NA	NA	146586483	146621336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_146586602_146597241_146597335_146616526_146616611_146619877_146620005_146621233
ENSMUSG00000056300.15_146586484_146627265_1	chr4	+	917	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	0	3413	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_4	149.310707921435	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146586483	146627265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146586602_146597241_146597335_146616526_146616611_146619877_146620005_146626770
ENSMUSG00000056300.15_146586484_146653427_1	chr4	+	487	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	0	29575	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	155.971752250207	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCTTTGTGGTATGGTG	NA	False	NA	NA	False	NA	NA	NA	146586483	146653427	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146586602_146597241_146597335_146616526_146616611_146619877_146620005_146653362
ENSMUSG00000056300.15_146599377_146627265_1	chr4	+	909	5	NNC	ENSMUSG00000056300.15	novel	578	4	NA	NA	0	3413	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	172.99620660581	147	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146599376	146627265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146599500_146603534_146603615_146616526_146616611_146619877_146620005_146626770
ENSMUSG00000056300.15_146599377_146627265_2	chr4	+	829	4	NNC	ENSMUSG00000056300.15	novel	578	4	NA	NA	0	3413	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_3	181.726901329073	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146599376	146627265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146599500_146616526_146616611_146619877_146620005_146626770
ENSMUSG00000056300.15_146599377_146653428_1	chr4	+	400	4	NNC	ENSMUSG00000056300.15	novel	578	4	NA	NA	0	29576	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	188.697877277114	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTTTGTGGTATGGTGG	NA	False	NA	NA	False	NA	NA	NA	146599376	146653428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146599500_146616526_146616611_146619877_146620005_146653362
ENSMUSG00000056305.5_72296101_72322167_1	chr6	-	1804	13	FSM	ENSMUSG00000056305.5	ENSMUST00000070345.5	2244	13	0	440	0	-440	multi-exon	FALSE	canonical	3	571	junction_6	46.7748745470139	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGACTGACTGAAAGATT	NA	False	NA	-13	True	AATAAA	-22	NA	72322167	72296100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72296223_72296722_72296810_72298238_72298375_72302628_72302772_72305500_72305690_72306432_72306501_72310092_72310171_72313242_72313469_72314684_72314838_72315375_72315513_72316949_72317045_72319881_72319952_72321867
ENSMUSG00000056310.15_130284460_130369998_1	chr5	+	2506	16	NIC	ENSMUSG00000056310.15	novel	4698	9	NA	NA	0	-406	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	68.4530658350831	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGGCTTTGTCCTTAC	3512	False	NA	20	True	AATAAA	-23	NA	130284459	130369998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_130284487_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
ENSMUSG00000056310.15_130285876_130303786_1	chr5	+	1308	7	ISM	ENSMUSG00000056310.15	ENSMUST00000100662.10	1867	8	0	2804	0	-2804	5prime_fragment	FALSE	canonical	3	273	junction_6	27.5479380151925	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTCTGCACTTTGTGT	4928	False	NA	NA	False	ATTAAA	-17	NA	130285875	130303786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461
ENSMUSG00000056310.15_130285876_130369998_1	chr5	+	2638	16	FSM	ENSMUSG00000056310.15	ENSMUST00000040213.13	3044	16	0	406	0	-406	multi-exon	FALSE	canonical	3	235	junction_10	31.6406208676266	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGGCTTTGTCCTTAC	4928	False	NA	20	True	AATAAA	-23	NA	130285875	130369998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
ENSMUSG00000056394.21_13011206_13022670_1	chr7	+	758	6	ISM	ENSMUSG00000056394.21	ENSMUST00000177588.10	3174	28	-33	22680	-33	-2773	5prime_fragment	FALSE	canonical	3	470	junction_1	352.187222936892	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAAGAAGAAGGTGAG	1074	False	NA	NA	False	AAGAAA	-2	NA	13011205	13022670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_13011456_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589
ENSMUSG00000056394.21_13012761_13022670_1	chr7	+	633	6	ISM	ENSMUSG00000056394.21	ENSMUST00000146998.9	944	9	0	2773	0	-2773	5prime_fragment	FALSE	canonical	0	0	junction_1	535.999104476864	693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAAGAAGAAGGTGAG	2629	False	NA	NA	False	AAGAAA	-2	NA	13012760	13022670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589
ENSMUSG00000056394.21_13012761_13045351_1	chr7	+	3089	28	NIC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	347.18983947761	1651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGAGGAGGTCTACAT	2629	False	NA	31	True	AATAAA	-19	NA	13012760	13045351	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023313_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
ENSMUSG00000056436.5_76184286_76190794_1	chr2	-	748	5	NNC	ENSMUSG00000056436.5	novel	655	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	99.0176751898367	2478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCGTTATGTTTATGA	NA	False	NA	1	True	AATAAA	-30	NA	76190794	76184285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_76184581_76186423_76186617_76187916_76187946_76189396_76189490_76190656
ENSMUSG00000056436.5_76184286_76190794_2	chr2	-	626	3	NIC	ENSMUSG00000056436.5	novel	655	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	45	junction_2	94.5	2282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCGTTATGTTTATGA	NA	False	NA	1	True	AATAAA	-30	NA	76190794	76184285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_76184581_76186423_76186617_76190656
ENSMUSG00000056458.17_110774232_110805526_1	chr12	-	1309	9	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1835	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_7	83.7383387403882	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9507	False	NA	-3	True	AATATA	-18	NA	110805526	110774231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110805381
ENSMUSG00000056458.17_110774232_110805526_2	chr12	-	1470	11	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1835	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_10	69.773992289391	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9507	False	NA	-3	True	AATATA	-18	NA	110805526	110774231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110805381
ENSMUSG00000056458.17_110774232_110805526_3	chr12	-	1483	10	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1835	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_8	78.692086288549	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9507	False	NA	-3	True	AATATA	-18	NA	110805526	110774231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110805381
ENSMUSG00000056458.17_110774232_110805526_4	chr12	-	1644	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1835	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_11	66.2311254884822	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9507	False	NA	-3	True	AATATA	-18	NA	110805526	110774231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110805381
ENSMUSG00000056458.17_110774232_110807361_1	chr12	-	1324	9	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	88.295579589241	176	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7672	False	NA	-3	True	AATATA	-18	NA	110807361	110774231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807260
ENSMUSG00000056458.17_110774232_110807361_2	chr12	-	1265	9	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	98.5228399915471	188	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7672	False	NA	-3	True	AATATA	-18	NA	110807361	110774231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110807260
ENSMUSG00000056458.17_110774232_110807361_3	chr12	-	1287	9	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	97.9903534793094	147	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7672	False	NA	-3	True	AATATA	-18	NA	110807361	110774231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777176_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807260
ENSMUSG00000056458.17_110774232_110807361_4	chr12	-	1507	11	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	80	junction_10	69.6330381356436	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7672	False	NA	-3	True	AATATA	-18	NA	110807361	110774231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
ENSMUSG00000056531.12_108280741_108284127_1	chr5	+	556	3	ISM	ENSMUSG00000056531.12	ENSMUST00000047677.9	5336	29	-39	97367	0	-3314	5prime_fragment	FALSE	canonical	2	80	junction_2	6.5	96	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTGGATGAGTGTTTT	1104	False	NA	NA	False	AATATA	-16	NA	108280740	108284127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_108280865_108283287_108283431_108283838
ENSMUSG00000056531.12_108280741_108287449_1	chr5	+	1109	4	ISM	ENSMUSG00000056531.12	ENSMUST00000047677.9	5336	29	-39	94045	0	8	5prime_fragment	FALSE	canonical	2	80	junction_2	5.90668171555645	135	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCCGCAAGAATCTTTGG	1104	False	NA	NA	False	NA	NA	NA	108280740	108287449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_108280865_108283287_108283431_108283838_108284011_108286779
ENSMUSG00000056537.12_103005984_103024890_1	chrX	-	2214	5	FSM	ENSMUSG00000056537.12	ENSMUST00000070705.6	7429	5	0	5215	0	-5215	multi-exon	FALSE	canonical	3	128	junction_4	35.6300435026397	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTCATTGCTTTCTTAG	2373	False	NA	NA	False	TATAAA	-14	NA	103024890	103005983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_103007650_103008856_103008941_103010096_103010287_103022878_103022941_103024678
ENSMUSG00000056602.14_150119931_150269814_1	chr5	+	1139	7	NIC	ENSMUSG00000056602.14	novel	592	4	NA	NA	0	425	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	2.26691175145591	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTTCTCTCTTCTCAAA	1275	False	NA	NA	False	AAGAAA	-26	NA	150119930	150269814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_150120201_150233734_150233935_150249595_150249650_150263817_150263958_150269017_150269109_150269315_150269396_150269510
ENSMUSG00000056612.8_6952609_6954619_1	chr19	+	653	4	FSM	ENSMUSG00000056612.8	ENSMUST00000070850.8	999	4	273	73	0	1	multi-exon	FALSE	canonical	3	3100	junction_3	78.5295415043848	310	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTTTATATTGACTCT	1853	False	NA	NA	False	ATTAAA	-15	NA	6952608	6954619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6952875_6953911_6953996_6954225_6954259_6954349
ENSMUSG00000056629.17_6954953_6957808_1	chr19	-	762	6	FSM	ENSMUSG00000056629.17	ENSMUST00000177752.9	664	6	61	-159	0	156	multi-exon	FALSE	canonical	3	285	junction_5	164.60571071503	5964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCATATCTTCCCTGATAA	NA	False	NA	NA	False	AATAAA	-17	NA	6957808	6954952	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956510_6957761
ENSMUSG00000056629.17_6955112_6957454_1	chr19	-	632	6	NNC	ENSMUSG00000056629.17	novel	664	6	NA	NA	164	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	274.682070765458	965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957454	6955111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956510_6957378
ENSMUSG00000056629.17_6955112_6957808_1	chr19	-	597	6	NNC	ENSMUSG00000056629.17	novel	664	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	286.644309205677	1705	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957808	6955111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956033_6956340_6956510_6957761
ENSMUSG00000056629.17_6955112_6957808_12	chr19	-	626	5	NNC	ENSMUSG00000056629.17	novel	642	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	300.455071516525	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957808	6955111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6955326_6955757_6955805_6955925_6956039_6956340_6956546_6957761
ENSMUSG00000056629.17_6955112_6957808_13	chr19	-	633	6	NNC	ENSMUSG00000056629.17	novel	642	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	300.687878039671	2695	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957808	6955111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956033_6956340_6956546_6957761
ENSMUSG00000056629.17_6955112_6957808_14	chr19	-	590	5	NNC	ENSMUSG00000056629.17	novel	664	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	287.976887093392	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957808	6955111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6955326_6955757_6955805_6955925_6956039_6956340_6956510_6957761
ENSMUSG00000056629.17_6955112_6957808_15	chr19	-	590	4	NNC	ENSMUSG00000056629.17	novel	664	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	281.819090907625	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957808	6955111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6955303_6955855_6956039_6956340_6956510_6957761
ENSMUSG00000056629.17_6955112_6957808_16	chr19	-	632	6	NNC	ENSMUSG00000056629.17	novel	642	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	302.174121989293	2434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957808	6955111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6955303_6955378_6955415_6955757_6955794_6955921_6956039_6956340_6956546_6957761
ENSMUSG00000056629.17_6955112_6957808_2	chr19	-	626	4	NNC	ENSMUSG00000056629.17	novel	642	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	289.185446076081	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957808	6955111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6955303_6955855_6956039_6956340_6956546_6957761
ENSMUSG00000056629.17_6955112_6957808_4	chr19	-	544	6	NNC	ENSMUSG00000056629.17	novel	642	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	275.879973901695	225	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957808	6955111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956451_6957761
ENSMUSG00000056629.17_6955112_6957808_5	chr19	-	583	5	NNC	ENSMUSG00000056629.17	novel	664	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	287.976887093392	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957808	6955111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6955303_6955741_6955805_6955925_6956039_6956340_6956510_6957761
ENSMUSG00000056629.17_6955112_6957808_7	chr19	-	658	7	NNC	ENSMUSG00000056629.17	novel	642	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_6	320.696637546036	3797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957808	6955111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956546_6956681_6956701_6957761
ENSMUSG00000056629.17_6955112_6957808_8	chr19	-	619	5	NNC	ENSMUSG00000056629.17	novel	642	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	300.455071516525	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957808	6955111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6955303_6955741_6955805_6955925_6956039_6956340_6956546_6957761
ENSMUSG00000056629.17_6955112_6957808_9	chr19	-	594	6	NNC	ENSMUSG00000056629.17	novel	642	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	278.275834380206	2168	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957808	6955111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956501_6957761
ENSMUSG00000056666.14_72575611_72584471_1	chr6	+	1937	11	FSM	ENSMUSG00000056666.14	ENSMUST00000070597.13	3027	11	153	937	0	46	multi-exon	FALSE	canonical	3	404	junction_1	54.9894535342915	1056	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTGTTGTTAAGTCAAGA	NA	False	NA	17	True	TATAAA	-22	NA	72575610	72584471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637_72579840_72580636_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
ENSMUSG00000056671.8_42008665_42084282_1	chr18	-	819	7	NNC	ENSMUSG00000056671.8	novel	868	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	125.39061191156	1737	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGCTTTCTCCAAATGT	NA	False	NA	-14	True	AATAAA	-23	NA	42084282	42008664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_42008919_42014277_42014351_42045434_42045541_42065665_42065827_42068232_42068307_42070698_42070757_42084189
ENSMUSG00000056671.8_42008665_42084282_2	chr18	-	835	7	NNC	ENSMUSG00000056671.8	novel	868	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	134.957297773119	4337	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGCTTTCTCCAAATGT	NA	False	NA	-14	True	AATAAA	-23	NA	42084282	42008664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_42008919_42014277_42014343_42045434_42045541_42065665_42065827_42068232_42068307_42070698_42070757_42084165
ENSMUSG00000056671.8_42008665_42084282_3	chr18	-	831	7	NNC	ENSMUSG00000056671.8	novel	868	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	133.466600066583	4663	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGCTTTCTCCAAATGT	NA	False	NA	-14	True	AATAAA	-23	NA	42084282	42008664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_42008919_42014277_42014351_42045434_42045541_42065665_42065827_42068232_42068295_42070698_42070757_42084165
ENSMUSG00000056671.8_42008665_42084282_4	chr18	-	844	7	NNC	ENSMUSG00000056671.8	novel	868	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	134.002176599238	4116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGCTTTCTCCAAATGT	NA	False	NA	-14	True	AATAAA	-23	NA	42084282	42008664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_42008919_42014277_42014351_42045434_42045541_42065665_42065812_42068216_42068307_42070698_42070757_42084165
ENSMUSG00000056679.14_151150012_151151464_1	chrX	-	762	3	FSM	ENSMUSG00000056679.14	ENSMUST00000137840.2	998	3	236	0	236	0	multi-exon	FALSE	canonical	2	6	junction_1	2	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCTGTGTTTATAGGATG	NA	False	NA	NA	False	NA	NA	NA	151151464	151150011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_151150266_151150416_151150507_151151046
ENSMUSG00000056687.10_109253657_109287413_1	chr11	-	1378	4	NIC	ENSMUSG00000056687.10	novel	450	3	NA	NA	-32933	-7649	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	825	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCGCCAGGGCGGGCCGC	2149	False	NA	NA	False	NA	NA	NA	109287413	109253656	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_109254083_109256361_109256589_109283171_109283223_109286739
ENSMUSG00000056718.3_5850064_5873121_1	chr2	-	936	9	NIC	ENSMUSG00000056718.3	novel	617	3	NA	NA	-5376	16827	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	108	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACGTCCTCCTCCAGGCAC	NA	False	NA	NA	False	NA	NA	NA	5873121	5850063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869260_5871164_5871219_5872899
ENSMUSG00000056718.3_5850064_5873551_1	chr2	-	1366	9	NIC	ENSMUSG00000056718.3	novel	617	3	NA	NA	-5806	16827	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	892	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACGTCCTCCTCCAGGCAC	NA	False	NA	NA	False	NA	NA	NA	5873551	5850063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869260_5871164_5871219_5872899
ENSMUSG00000056718.3_5850064_5873551_2	chr2	-	1428	10	NNC	ENSMUSG00000056718.3	novel	617	3	NA	NA	-5806	16827	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	185	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACGTCCTCCTCCAGGCAC	NA	False	NA	NA	False	NA	NA	NA	5873551	5850063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869260_5869519_5869582_5871164_5871219_5872899
ENSMUSG00000056737.15_72521374_72539966_1	chr6	+	1239	9	NNC	ENSMUSG00000056737.15	novel	1247	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	27.9147698360563	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTGTGTGGCTTGTCC	NA	False	NA	12	True	AATAAA	-23	NA	72521373	72539966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_72521450_72532431_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
ENSMUSG00000056737.15_72526415_72539966_1	chr6	+	1241	10	FSM	ENSMUSG00000056737.15	ENSMUST00000114071.8	1400	10	159	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	14.6439217576592	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTGTGTGGCTTGTCC	NA	False	NA	12	True	AATAAA	-23	NA	72526414	72539966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_72526485_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
ENSMUSG00000056737.15_72526415_72539966_2	chr6	+	1233	9	NNC	ENSMUSG00000056737.15	novel	1400	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	27.9147698360563	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTGTGTGGCTTGTCC	NA	False	NA	12	True	AATAAA	-23	NA	72526414	72539966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_72526485_72532431_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
ENSMUSG00000056738.12_129066584_129067928_1	chr2	+	568	3	NNC	ENSMUSG00000056738.12	novel	3431	5	NA	NA	-3358	-5963	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	2	52	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGACATAGGTGTCTGT	574	False	NA	NA	False	TATAAA	-1	NA	129066583	129067928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_129066675_129067327_129067517_129067640
ENSMUSG00000056758.15_120199879_120312197_1	chr10	-	834	5	FSM	ENSMUSG00000056758.15	ENSMUST00000072777.14	3710	5	177	2699	0	-2699	multi-exon	FALSE	canonical	1	2	junction_1	7.32717544487642	322	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTTTTTCCTTAACT	NA	False	NA	-13	True	NA	NA	NA	120312197	120199878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_120200202_120210572_120210606_120298568_120298620_120309156_120309244_120311857
ENSMUSG00000056770.16_108072925_108074917_1	chr12	-	1115	2	ISM	ENSMUSG00000056770.16	ENSMUST00000148119.8	3056	5	6289	0	6289	0	3prime_fragment	FALSE	canonical	3	471	junction_1	0	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATTTGTTTACTTTTTG	NA	False	NA	-67	True	CATAAA	-26	NA	108074917	108072924	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_108073938_108074815
ENSMUSG00000056770.16_108072925_108145479_1	chr12	-	2426	13	FSM	ENSMUSG00000056770.16	ENSMUST00000071095.14	2755	13	94	235	-4	0	multi-exon	FALSE	canonical	3	469	junction_9	51.1017503505397	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATTTGTTTACTTTTTG	NA	False	NA	-67	True	CATAAA	-26	NA	108145479	108072924	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108084500_108084616_108085364_108085424_108124012_108124270_108124534_108124608_108126491_108126641_108129231_108129325_108131321_108131432_108145411
ENSMUSG00000056820.8_125739788_125760729_1	chr8	+	2137	6	FSM	ENSMUSG00000056820.8	ENSMUST00000075896.7	2391	6	52	202	0	-202	multi-exon	FALSE	canonical	3	396	junction_1	21.35790251874	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGACTTGTTGTCCTGGT	5246	False	NA	NA	False	AATAAA	-20	NA	125739787	125760729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506_125755635_125759235
ENSMUSG00000056851.15_102383051_102407324_1	chr15	+	1166	9	ISM	ENSMUSG00000056851.15	ENSMUST00000108838.5	2571	13	3831	1170	0	8	3prime_fragment	FALSE	non_canonical	0	0	junction_3	206.237726907567	1119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	6086	False	NA	13	True	ATTAAA	-13	NA	102383050	102407324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_102383051_102407324_2	chr15	+	1205	10	ISM	ENSMUSG00000056851.15	ENSMUST00000229918.2	1463	15	3377	-248	0	8	3prime_fragment	FALSE	non_canonical	0	0	junction_3	165.493873669759	1618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	6086	False	NA	13	True	ATTAAA	-13	NA	102383050	102407324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_102383051_102407324_3	chr15	+	1193	10	ISM	ENSMUSG00000056851.15	ENSMUST00000229618.2	1576	14	3963	-8	0	8	3prime_fragment	FALSE	canonical	3	231	junction_3	119.145102944081	1571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	6086	False	NA	13	True	ATTAAA	-13	NA	102383050	102407324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_102383051_102407324_4	chr15	+	1286	11	ISM	ENSMUSG00000056851.15	ENSMUST00000078404.15	3222	14	1879	1172	0	8	3prime_fragment	FALSE	canonical	3	231	junction_3	121.524318553942	1808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	6086	False	NA	13	True	ATTAAA	-13	NA	102383050	102407324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_102383051_102407324_5	chr15	+	1295	11	NIC	ENSMUSG00000056851.15	novel	1086	14	NA	NA	0	8	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_3	170.04281813708	2007	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	6086	False	NA	13	True	ATTAAA	-13	NA	102383050	102407324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398189_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_102383051_102407324_6	chr15	+	1247	10	ISM	ENSMUSG00000056851.15	ENSMUST00000229854.2	1499	14	3832	-8	0	8	3prime_fragment	FALSE	canonical	3	22	junction_7	167.800145676006	1063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	6086	False	NA	13	True	ATTAAA	-13	NA	102383050	102407324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
ENSMUSG00000056851.15_102399117_102407324_1	chr15	+	523	2	ISM	ENSMUSG00000056851.15	ENSMUST00000230631.2	585	3	1161	-273	1161	8	3prime_fragment	FALSE	canonical	3	634	junction_1	0	948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	5016	False	NA	13	True	ATTAAA	-13	NA	102399116	102407324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_102399239_102406923
ENSMUSG00000056888.12_111808680_111822000_1	chr10	-	2575	10	NIC	ENSMUSG00000056888.12	novel	1183	7	NA	NA	7393	12673	intron_retention	TRUE	non_canonical	0	0	junction_1	0	2850	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCCGGAAGTGGAACTGT	NA	False	NA	NA	False	NA	NA	NA	111822000	111808679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_111808780_111811389_111811563_111812646_111812782_111813016_111813143_111813219_111813304_111814995_111815053_111815791_111815963_111818705_111818784_111818868_111818963_111820443
ENSMUSG00000056899.11_41074125_41118663_1	chr12	+	448	3	FSM	ENSMUSG00000056899.11	ENSMUST00000153184.8	669	3	0	221	0	-221	multi-exon	FALSE	canonical	3	185	junction_1	38	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCGGTCTGTGTACTTTGA	NA	False	NA	NA	False	AATAAA	-15	NA	41074124	41118663	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_41074145_41074559_41074633_41118308
ENSMUSG00000056938.17_102993902_103003026_1	chr11	+	1510	8	NIC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	12	junction_2	49.0289377275694	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	6	True	ATTAAA	-16	NA	102993901	103003026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_102993972_102994351_102994471_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUSG00000056938.17_102993902_103003026_2	chr11	+	1631	9	NIC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	44	junction_1	32.3138902022025	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	6	True	ATTAAA	-16	NA	102993901	103003026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_102993972_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUSG00000056938.17_102993902_103003026_3	chr11	+	1717	10	NIC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	19	junction_1	40.6569508733868	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	6	True	ATTAAA	-16	NA	102993901	103003026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_102993923_102994060_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUSG00000056941.18_153460754_153474671_1	chr2	-	1205	8	NNC	ENSMUSG00000056941.18	novel	1343	10	NA	NA	-11	0	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_1	66.4548335184069	180	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAGCTCTGAATCCA	NA	False	NA	-19	True	ATTAAA	-17	NA	153474671	153460753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_153461408_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474513
ENSMUSG00000056941.18_153460754_153474671_2	chr2	-	1276	9	NNC	ENSMUSG00000056941.18	novel	1343	10	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	62.0119696107131	1069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAGCTCTGAATCCA	NA	False	NA	-19	True	ATTAAA	-17	NA	153474671	153460753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464602_153464687_153464749_153470384_153470488_153471112_153471167_153474513
ENSMUSG00000056962.12_116728259_116733682_1	chr11	-	1418	5	ISM	ENSMUSG00000056962.12	ENSMUST00000047616.10	1668	6	593	1	-136	0	3prime_fragment	FALSE	canonical	3	250	junction_2	32.8252951243397	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGGACAGCTTTCTT	NA	False	NA	-8	True	AATAAA	-15	NA	116733682	116728258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_116728590_116729815_116729955_116731235_116731372_116731894_116732182_116733157
ENSMUSG00000056962.12_116728259_116733682_2	chr11	-	1380	5	NIC	ENSMUSG00000056962.12	novel	1437	5	NA	NA	-136	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_2	126.084049348044	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGGACAGCTTTCTT	NA	False	NA	-8	True	AATAAA	-15	NA	116733682	116728258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_116728590_116729815_116729955_116731273_116731372_116731894_116732182_116733157
ENSMUSG00000056962.12_116728259_116734119_2	chr11	-	1511	6	FSM	ENSMUSG00000056962.12	ENSMUST00000047616.10	1668	6	156	1	-3	0	multi-exon	FALSE	canonical	3	250	junction_2	32.356761271796	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGGACAGCTTTCTT	NA	False	NA	-8	True	AATAAA	-15	NA	116734119	116728258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116728590_116729815_116729955_116731235_116731372_116731894_116732182_116733157_116733547_116733890
ENSMUSG00000056999.17_37247983_37255163_1	chr19	-	481	5	ISM	ENSMUSG00000056999.17	ENSMUST00000154339.8	2001	15	29628	154	13114	-154	3prime_fragment	FALSE	canonical	3	876	junction_3	22.4874965258474	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGATGTAGAATATTTTT	8923	False	NA	-20	True	AATAAA	-13	NA	37255163	37247982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139
ENSMUSG00000056999.17_37247983_37255270_1	chr19	-	588	5	ISM	ENSMUSG00000056999.17	ENSMUST00000154339.8	2001	15	29521	154	13007	-154	3prime_fragment	FALSE	canonical	3	876	junction_3	22.4874965258474	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGATGTAGAATATTTTT	8816	False	NA	-20	True	AATAAA	-13	NA	37255270	37247982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139
ENSMUSG00000056999.17_37247983_37340010_1	chr19	-	3218	25	FSM	ENSMUSG00000056999.17	ENSMUST00000131070.3	5059	25	0	1841	0	-154	multi-exon	TRUE	canonical	3	707	junction_13	63.1947496940125	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGATGTAGAATATTTTT	NA	False	NA	-20	True	AATAAA	-13	NA	37340010	37247982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37339912
ENSMUSG00000057093.15_27391563_27401914_2	chr7	+	412	5	NNC	ENSMUSG00000057093.15	novel	1947	4	NA	NA	225	-1578	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	23.1516738055805	128	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTACTTTTAGTGATGG	NA	False	NA	12	True	AGTAAA	-16	NA	27391562	27401914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_27391586_27391906_27391960_27392906_27393034_27398077_27398177_27401804
ENSMUSG00000057093.15_27391563_27401914_3	chr7	+	491	5	NNC	ENSMUSG00000057093.15	novel	1947	4	NA	NA	225	-1578	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	22.5554871372799	168	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTACTTTTAGTGATGG	NA	False	NA	12	True	AGTAAA	-16	NA	27391562	27401914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_27391665_27391906_27391960_27392906_27393034_27398077_27398177_27401804
ENSMUSG00000057113.14_33102511_33113077_1	chr11	-	1275	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	6153.94062451044	128021	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTGTTTCTATTTGCTT	NA	False	NA	-33	True	AATAAA	-20	NA	33113077	33102510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111221_33111547_33111628_33112921
ENSMUSG00000057113.14_33102511_33113077_2	chr11	-	1270	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6152.71604740541	62613	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTGTTTCTATTTGCTT	NA	False	NA	-33	True	AATAAA	-20	NA	33113077	33102510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_33102843_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUSG00000057113.14_33102511_33113077_3	chr11	-	1277	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	5941.6931265423	172848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTGTTTCTATTTGCTT	NA	False	NA	-33	True	AATAAA	-20	NA	33113077	33102510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106098_33106659_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUSG00000057113.14_33102511_33113077_4	chr11	-	1274	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6095.74878091281	68781	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTGTTTCTATTTGCTT	NA	False	NA	-33	True	AATAAA	-20	NA	33113077	33102510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106738_33106986_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUSG00000057113.14_33102511_33113077_5	chr11	-	1272	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	6157.24081143494	100794	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTGTTTCTATTTGCTT	NA	False	NA	-33	True	AATAAA	-20	NA	33113077	33102510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110433_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUSG00000057113.14_33102511_33113077_6	chr11	-	1278	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	322	junction_7	6065.11492471495	286994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTGTTTCTATTTGCTT	NA	False	NA	-33	True	AATAAA	-20	NA	33113077	33102510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110435_33110823_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUSG00000057113.14_33102511_33113077_7	chr11	-	1274	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	1051	junction_7	5857.07688527306	177983	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTGTTTCTATTTGCTT	NA	False	NA	-33	True	AATAAA	-20	NA	33113077	33102510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110435_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUSG00000057113.14_33104927_33113077_1	chr11	-	1155	10	NNC	ENSMUSG00000057113.14	novel	1157	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	322	junction_6	7794.65259878864	40620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGGATGTATGTGACAA	NA	False	NA	-22	True	AATAAA	-15	NA	33113077	33104926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110435_33110823_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUSG00000057113.14_33104927_33113077_2	chr11	-	1154	10	NNC	ENSMUSG00000057113.14	novel	1157	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7581.32144903382	41905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGGATGTATGTGACAA	NA	False	NA	-22	True	AATAAA	-15	NA	33113077	33104926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_33105221_33106002_33106098_33106659_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUSG00000057123.15_96778409_96812628_1	chr3	+	1752	14	NIC	ENSMUSG00000057123.15	novel	3668	4	NA	NA	-33600	-145561	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	338	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGGCGCGTGCTTACGT	NA	False	NA	NA	False	NA	NA	NA	96778408	96812628	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_96778911_96779792_96779859_96780775_96780866_96782943_96783040_96787389_96787483_96787936_96788026_96789834_96789945_96797224_96797306_96798118_96798240_96800181_96800284_96800813_96800921_96804648_96804753_96805807_96805868_96812497
ENSMUSG00000057130.13_80250061_80262312_1	chr18	+	640	3	ISM	ENSMUSG00000057130.13	ENSMUST00000145963.9	4078	4	51	6758	-17	218	5prime_fragment	FALSE	canonical	3	2407	junction_2	335	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTACATATAGCTTCACT	NA	False	NA	NA	False	AATAAA	-18	NA	80250060	80262312	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_+_80250117_80250368_80250559_80261918
ENSMUSG00000057130.13_80250061_80265417_1	chr18	+	374	4	FSM	ENSMUSG00000057130.13	ENSMUST00000145963.9	4078	4	51	3653	-17	0	multi-exon	FALSE	canonical	3	2407	junction_2	310.116465577406	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGCACTGGCAACAACAACA	NA	False	NA	NA	False	NA	NA	NA	80250060	80265417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_80250117_80250368_80250559_80261918_80262023_80265393
ENSMUSG00000057130.13_80250061_80265746_1	chr18	+	772	5	NIC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	-17	193	combination_of_known_splicesites	FALSE	canonical	3	288	junction_3	1074.60606154069	13423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCTGTGCTTACTGCG	NA	False	NA	13	True	AATAAA	-21	NA	80250060	80265746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_80250117_80250368_80250559_80253276_80253346_80261918_80262023_80265393
ENSMUSG00000057130.13_80250061_80265746_2	chr18	+	688	4	NNC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	-17	193	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1140.60890171288	18870	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCTGTGCTTACTGCG	NA	False	NA	13	True	AATAAA	-21	NA	80250060	80265746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_80250102_80250368_80250559_80261918_80262023_80265393
ENSMUSG00000057130.13_80250061_80265746_3	chr18	+	691	4	NNC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	-17	193	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1321.21484500692	11242	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCTGTGCTTACTGCG	NA	False	NA	13	True	AATAAA	-21	NA	80250060	80265746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_80250117_80250368_80250559_80261918_80262011_80265393
ENSMUSG00000057130.13_80250110_80265746_1	chr18	+	699	4	NIC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	1	193	combination_of_known_junctions	FALSE	canonical	3	109	junction_1	1089.22796308007	9255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCTGTGCTTACTGCG	NA	False	NA	13	True	AATAAA	-21	NA	80250109	80265746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_80250162_80250368_80250559_80261918_80262023_80265393
ENSMUSG00000057130.13_80250110_80265746_2	chr18	+	814	4	FSM	ENSMUSG00000057130.13	ENSMUST00000025464.8	517	4	32	-329	1	193	multi-exon	FALSE	canonical	3	221	junction_1	1036.43309265748	9516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCTGTGCTTACTGCG	NA	False	NA	13	True	AATAAA	-21	NA	80250109	80265746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_80250277_80250368_80250559_80261918_80262023_80265393
ENSMUSG00000057130.13_80250110_80265746_3	chr18	+	768	5	NIC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	1	193	combination_of_known_splicesites	FALSE	canonical	3	109	junction_1	923.262252829606	2757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCTGTGCTTACTGCG	NA	False	NA	13	True	AATAAA	-21	NA	80250109	80265746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_80250162_80250368_80250559_80253276_80253346_80261918_80262023_80265393
ENSMUSG00000057133.15_160871759_160950946_1	chr2	-	1096	7	ISM	ENSMUSG00000057133.15	ENSMUST00000138078.8	3092	17	49	21805	-4	0	5prime_fragment	FALSE	canonical	3	60	junction_4	13.7931142241337	243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAAAGGGTCTTCTATAT	NA	False	NA	NA	False	AATAAA	-17	NA	160950946	160871758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_160871882_160872666_160872730_160881113_160881264_160883904_160884053_160894307_160894826_160901838_160901895_160950908
ENSMUSG00000057137.10_34850630_34854995_1	chr6	+	1513	5	NNC	ENSMUSG00000057137.10	novel	2614	2	NA	NA	981	3114	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	68	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTGCGAGACGCGCACG	NA	False	NA	NA	False	NA	NA	NA	34850629	34854995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_34851631_34852286_34852329_34852471_34852548_34853473_34853707_34854834
ENSMUSG00000057147.14_114348410_114485368_1	chr2	-	1148	9	FSM	ENSMUSG00000057147.14	ENSMUST00000102542.10	2734	9	77	1509	0	216	multi-exon	FALSE	canonical	3	190	junction_3	18.9670767383907	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGTGCGCGCGCAC	NA	False	NA	NA	False	NA	NA	NA	114485368	114348409	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_114348774_114350192_114350281_114353524_114353620_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
ENSMUSG00000057176.5_127172552_127182472_1	chr7	-	1523	10	NIC	ENSMUSG00000057176.5	novel	2536	9	NA	NA	2422	9003	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCGCCCCCATCATTGCA	NA	False	NA	NA	False	NA	NA	NA	127182472	127172551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_127172629_127173025_127173139_127176706_127176819_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUSG00000057176.5_127172755_127182472_1	chr7	-	1781	9	NIC	ENSMUSG00000057176.5	novel	2536	9	NA	NA	2422	8800	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTACCGCGCAAGCGCACT	NA	False	NA	NA	False	NA	NA	NA	127182472	127172754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_127173139_127176706_127176883_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUSG00000057176.5_127182532_127187345_1	chr7	-	1329	8	NIC	ENSMUSG00000057176.5	novel	2536	9	NA	NA	-4	0	intron_retention	FALSE	canonical	3	22	junction_2	2.18529407725405	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACGAGCACCTTCTGGG	8708	False	NA	-4	True	AATAAA	-30	NA	127187345	127182531	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_127182762_127183992_127184086_127184164_127184226_127184316_127184697_127185446_127185617_127185994_127186061_127186735_127186768_127187048
ENSMUSG00000057176.5_127182532_127187345_2	chr7	-	1137	9	FSM	ENSMUSG00000057176.5	ENSMUST00000072155.5	2536	9	422	977	-4	0	multi-exon	FALSE	canonical	3	15	junction_4	3.80788655293195	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACGAGCACCTTCTGGG	8708	False	NA	-4	True	AATAAA	-30	NA	127187345	127182531	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127182762_127183992_127184086_127184164_127184226_127184316_127184434_127184625_127184697_127185446_127185617_127185994_127186061_127186735_127186768_127187048
ENSMUSG00000057176.5_127182532_127187345_3	chr7	-	1020	8	NIC	ENSMUSG00000057176.5	novel	2536	9	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_3	6.88684045325369	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACGAGCACCTTCTGGG	8708	False	NA	-4	True	AATAAA	-30	NA	127187345	127182531	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_127182762_127183992_127184086_127184164_127184226_127184625_127184697_127185446_127185617_127185994_127186061_127186735_127186768_127187048
ENSMUSG00000057181.16_80254469_80268845_1	chr11	-	1395	10	NNC	ENSMUSG00000057181.16	novel	4554	10	NA	NA	-4	336	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	30.825674724525	372	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATGTCTTCACCAGGTCC	NA	False	NA	-17	True	ATTAAA	-14	NA	80268845	80254468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_80254845_80255661_80255766_80258887_80259025_80259353_80259419_80261156_80261277_80264465_80264518_80264887_80265044_80266332_80266459_80267628_80267710_80268667
ENSMUSG00000057215.7_106842229_106895201_1	chr7	+	973	4	NNC	ENSMUSG00000057215.7	novel	1294	6	NA	NA	0	-4402	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	8.98146239020499	431	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTGTGTGTTTGTCCCA	NA	False	NA	12	True	AATAAA	-19	NA	106842228	106895201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_106842336_106883988_106884145_106884819_106884938_106894609
ENSMUSG00000057215.7_106842229_106895201_2	chr7	+	1106	5	NNC	ENSMUSG00000057215.7	novel	1294	6	NA	NA	0	-4402	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_4	14.7880864211703	502	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTGTGTGTTTGTCCCA	NA	False	NA	12	True	AATAAA	-19	NA	106842228	106895201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_106842336_106883988_106884145_106884819_106884938_106891710_106891844_106894609
ENSMUSG00000057219.12_115381246_115382650_1	chr11	+	759	4	NIC	ENSMUSG00000057219.12	novel	2260	3	NA	NA	14466	1357	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGAAGATGCCAGACCCGG	NA	False	NA	NA	False	NA	NA	NA	115381245	115382650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_115381571_115381678_115381794_115382096_115382198_115382432
ENSMUSG00000057219.12_115381246_115382650_2	chr11	+	928	4	NIC	ENSMUSG00000057219.12	novel	2260	3	NA	NA	14466	1357	intron_retention	FALSE	non_canonical	0	0	junction_1	0	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGAAGATGCCAGACCCGG	NA	False	NA	NA	False	NA	NA	NA	115381245	115382650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_115381794_115381963_115382025_115382096_115382198_115382432
ENSMUSG00000057219.12_115381246_115382650_3	chr11	+	813	5	NNC	ENSMUSG00000057219.12	novel	2260	3	NA	NA	14466	1357	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	973	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGAAGATGCCAGACCCGG	NA	False	NA	NA	False	NA	NA	NA	115381245	115382650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_115381571_115381678_115381794_115381963_115382025_115382096_115382191_115382432
ENSMUSG00000057236.11_129203310_129229102_1	chr4	-	814	5	NIC	ENSMUSG00000057236.11	novel	722	4	NA	NA	-60	0	combination_of_known_junctions	FALSE	canonical	3	143	junction_1	413.387454454051	6500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	2553	False	NA	-29	True	AATAAA	-14	NA	129229102	129203309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_129203670_129216594_129216663_129222380_129222527_129228289_129228438_129229010
ENSMUSG00000057236.11_129203310_129229102_2	chr4	-	1929	12	FSM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	61	2417	-60	0	multi-exon	TRUE	canonical	3	482	junction_1	226.647613038099	3862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	2553	False	NA	-29	True	AATAAA	-14	NA	129229102	129203309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
ENSMUSG00000057236.11_129203310_129229102_3	chr4	-	1013	6	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-60	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	430.118402303366	6680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	2553	False	NA	-29	True	AATAAA	-14	NA	129229102	129203309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_129203679_129216177_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
ENSMUSG00000057236.11_129203450_129229102_1	chr4	-	674	5	NIC	ENSMUSG00000057236.11	novel	722	4	NA	NA	-60	-140	combination_of_known_junctions	FALSE	canonical	3	143	junction_1	413.387454454051	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTTTTTAGGGGTTAG	2553	False	NA	-14	True	ATTAAA	-17	NA	129229102	129203449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_129203670_129216594_129216663_129222380_129222527_129228289_129228438_129229010
ENSMUSG00000057278.9_86342672_86355889_1	chr6	+	594	5	Fusion	ENSMUSG00000057497.9_ENSMUSG00000057278.9	novel	1643	3	NA	NA	-24	0	multi-exon	TRUE	canonical	3	56	junction_2	1365.49485077755	5148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTTCTGCTGTTGTGGA	8661	False	NA	29	True	AATAAA	-20	NA	86342671	86355889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr6_+_86342802_86343591_86343733_86352658_86352682_86353476_86353602_86355714
ENSMUSG00000057278.9_86348524_86355889_1	chr6	+	460	5	NNC	ENSMUSG00000057278.9	novel	1055	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1677.31228457911	38130	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTTCTGCTGTTGTGGA	NA	False	NA	29	True	AATAAA	-20	NA	86348523	86355889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_86348597_86352658_86352682_86353242_86353307_86353476_86353602_86355714
ENSMUSG00000057278.9_86348524_86355889_2	chr6	+	486	3	NNC	ENSMUSG00000057278.9	novel	746	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1909	1801	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTTCTGCTGTTGTGGA	NA	False	NA	29	True	AATAAA	-20	NA	86348523	86355889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_86348710_86353476_86353602_86355714
ENSMUSG00000057278.9_86348524_86355889_3	chr6	+	377	3	NNC	ENSMUSG00000057278.9	novel	746	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1909	6731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTTCTGCTGTTGTGGA	NA	False	NA	29	True	AATAAA	-20	NA	86348523	86355889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_86348606_86353481_86353602_86355714
ENSMUSG00000057278.9_86348524_86355889_4	chr6	+	388	3	NNC	ENSMUSG00000057278.9	novel	746	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1909	19758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTTCTGCTGTTGTGGA	NA	False	NA	29	True	AATAAA	-20	NA	86348523	86355889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_86348612_86353476_86353602_86355714
ENSMUSG00000057278.9_86348524_86355889_5	chr6	+	386	4	NNC	ENSMUSG00000057278.9	novel	1055	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1256.26775277672	39692	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTTCTGCTGTTGTGGA	NA	False	NA	29	True	AATAAA	-20	NA	86348523	86355889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_86348597_86352658_86352682_86353476_86353602_86355724
ENSMUSG00000057278.9_86348524_86355889_6	chr6	+	379	4	NNC	ENSMUSG00000057278.9	novel	1055	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1256.26775277672	29527	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTTCTGCTGTTGTGGA	NA	False	NA	29	True	AATAAA	-20	NA	86348523	86355889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_86348597_86352658_86352682_86353476_86353602_86355731
ENSMUSG00000057286.7_116562495_116566624_2	chr11	-	1263	5	NIC	ENSMUSG00000057286.7	novel	3643	9	NA	NA	3880	3634	intron_retention	FALSE	non_canonical	0	0	junction_1	0	175	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAGATCGCGCTTGCGCG	NA	False	NA	NA	False	NA	NA	NA	116566624	116562494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566333
ENSMUSG00000057286.7_116562495_116566624_3	chr11	-	856	6	NIC	ENSMUSG00000057286.7	novel	3643	9	NA	NA	3880	3634	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2378	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAGATCGCGCTTGCGCG	NA	False	NA	NA	False	NA	NA	NA	116566624	116562494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566333
ENSMUSG00000057286.7_116562495_116566624_4	chr11	-	849	6	NNC	ENSMUSG00000057286.7	novel	3643	9	NA	NA	3880	3634	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2101	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAGATCGCGCTTGCGCG	NA	False	NA	NA	False	NA	NA	NA	116566624	116562494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_116562583_116562989_116563182_116563489_116563565_116564763_116564891_116565125_116565202_116566333
ENSMUSG00000057286.7_116562495_116566624_5	chr11	-	842	6	NNC	ENSMUSG00000057286.7	novel	3643	9	NA	NA	3880	3634	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	962	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAGATCGCGCTTGCGCG	NA	False	NA	NA	False	NA	NA	NA	116566624	116562494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_116562583_116562989_116563182_116563489_116563565_116564763_116564884_116565125_116565202_116566333
ENSMUSG00000057286.7_116562495_116566624_6	chr11	-	1164	5	NIC	ENSMUSG00000057286.7	novel	3643	9	NA	NA	3880	3634	intron_retention	FALSE	non_canonical	0	0	junction_1	0	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAGATCGCGCTTGCGCG	NA	False	NA	NA	False	NA	NA	NA	116566624	116562494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_116562583_116562989_116563565_116564763_116564898_116565125_116565202_116566333
ENSMUSG00000057335.12_176615956_176641633_1	chr1	-	563	4	ISM	ENSMUSG00000057335.12	ENSMUST00000192961.6	2708	7	0	9997	0	0	5prime_fragment	FALSE	canonical	3	59	junction_1	8.28653526310404	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTTATGCCTACTGTT	NA	False	NA	NA	False	TATAAA	-14	NA	176641633	176615955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_176616112_176620101_176620192_176621070_176621216_176641461
ENSMUSG00000057335.12_176615956_176641675_1	chr1	-	605	4	ISM	ENSMUSG00000057335.12	ENSMUST00000192961.6	2708	7	-42	9997	-42	0	5prime_fragment	FALSE	canonical	3	59	junction_1	8.28653526310404	62	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTTATGCCTACTGTT	NA	False	NA	NA	False	TATAAA	-14	NA	176641675	176615955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_176616112_176620101_176620192_176621070_176621216_176641461
ENSMUSG00000057367.13_7818228_7833857_1	chr9	-	1740	7	FSM	ENSMUSG00000057367.13	ENSMUST00000074246.7	3130	7	1399	-9	1399	0	multi-exon	FALSE	canonical	3	127	junction_2	23.4781222039204	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGATGTGATTCATGAGA	3181	False	NA	-1	True	AATAAA	-21	NA	7833857	7818227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_7818945_7819021_7819064_7819307_7819563_7820974_7821221_7825615_7825665_7826931_7827011_7833505
ENSMUSG00000057375.14_107171581_107217020_1	chr4	+	1176	9	NIC	ENSMUSG00000057375.14	novel	1321	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_8	129.727599222371	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTCCTTCAGCTCTT	NA	False	NA	29	True	AGTAAA	-19	NA	107171580	107217020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205_107202389_107216803
ENSMUSG00000057375.14_107171581_107217020_2	chr4	+	1316	10	NNC	ENSMUSG00000057375.14	novel	1321	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	124.377660651484	1538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTCCTTCAGCTCTT	NA	False	NA	29	True	AGTAAA	-19	NA	107171580	107217020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201891_107202205_107202389_107207610_107207736_107216803
ENSMUSG00000057375.14_107171581_107217020_3	chr4	+	1320	10	NNC	ENSMUSG00000057375.14	novel	1321	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_9	123.24050560681	1533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTCCTTCAGCTCTT	NA	False	NA	29	True	AGTAAA	-19	NA	107171580	107217020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205_107202389_107207610_107207755_107216803
ENSMUSG00000057388.10_13130236_13134990_1	chr17	-	1020	4	NIC	ENSMUSG00000057388.10	novel	1219	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	479.798800424604	5123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCCTTACTGTGTTGTG	NA	False	NA	-9	True	ATTAAA	-18	NA	13134990	13130235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_13130637_13132656_13132889_13134524_13134712_13134790
ENSMUSG00000057388.10_13130236_13134990_2	chr17	-	1008	4	NNC	ENSMUSG00000057388.10	novel	1219	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	476.277463483443	4905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCCTTACTGTGTTGTG	NA	False	NA	-9	True	ATTAAA	-18	NA	13134990	13130235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_13130637_13132625_13132889_13134524_13134712_13134833
ENSMUSG00000057388.10_13130236_13134990_3	chr17	-	903	4	NNC	ENSMUSG00000057388.10	novel	1219	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_2	486.977982618881	273	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCCTTACTGTGTTGTG	NA	False	NA	-9	True	ATTAAA	-18	NA	13134990	13130235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_13130637_13132656_13132815_13134524_13134712_13134833
ENSMUSG00000057388.10_13130236_13135691_1	chr17	-	1230	4	NNC	ENSMUSG00000057388.10	novel	1219	4	NA	NA	-459	0	at_least_one_novel_splicesite	FALSE	canonical	2	24	junction_3	475.563759015433	409	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCCTTACTGTGTTGTG	NA	False	NA	-9	True	ATTAAA	-18	NA	13135691	13130235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_13130637_13132656_13132889_13134524_13134712_13135281
ENSMUSG00000057388.10_13130367_13134990_1	chr17	-	846	4	FSM	ENSMUSG00000057388.10	ENSMUST00000079121.4	1219	4	242	131	0	-131	multi-exon	FALSE	canonical	3	996	junction_2	30.9120616516523	835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGTGTGTGCTTGTGTG	NA	False	NA	0	True	TTTAAA	-16	NA	13134990	13130366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_13130637_13132656_13132889_13134524_13134712_13134833
ENSMUSG00000057409.8_21709260_21727815_1	chr17	+	787	5	NNC	ENSMUSG00000057409.8	novel	3065	5	NA	NA	0	-2211	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	67.7287789643369	1311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGTTGTCTGAACAGTAAT	1475	False	NA	NA	False	AATAAA	-16	NA	21709259	21727815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_21709528_21711487_21711579_21720472_21720565_21725242_21725370_21727606
ENSMUSG00000057409.8_21709260_21727815_2	chr17	+	700	4	NNC	ENSMUSG00000057409.8	novel	3065	5	NA	NA	0	-2211	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	65.697962085762	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGTTGTCTGAACAGTAAT	1475	False	NA	NA	False	AATAAA	-16	NA	21709259	21727815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_21709528_21711487_21711579_21725242_21725370_21727601
ENSMUSG00000057409.8_21709260_21727815_3	chr17	+	792	5	NNC	ENSMUSG00000057409.8	novel	3065	5	NA	NA	0	-2211	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_4	24.0572234474388	1379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGTTGTCTGAACAGTAAT	1475	False	NA	NA	False	AATAAA	-16	NA	21709259	21727815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_21709528_21711487_21711579_21720472_21720565_21725242_21725370_21727601
ENSMUSG00000057411.10_26009480_26010755_1	chr17	-	760	3	FSM	ENSMUSG00000057411.10	ENSMUST00000236842.2	1886	3	1120	6	296	0	multi-exon	FALSE	canonical	3	227	junction_2	3.5	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8984	False	NA	-7	True	AATAAA	-17	NA	26010755	26009479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26009753_26009906_26009958_26010319
ENSMUSG00000057411.10_26009480_26011347_1	chr17	-	1352	3	FSM	ENSMUSG00000057411.10	ENSMUST00000236842.2	1886	3	528	6	0	0	multi-exon	FALSE	canonical	3	227	junction_2	3.5	610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8392	False	NA	-7	True	AATAAA	-17	NA	26011347	26009479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26009753_26009906_26009958_26010319
ENSMUSG00000057411.10_26009480_26011347_2	chr17	-	891	5	FSM	ENSMUSG00000057411.10	ENSMUST00000072735.9	1321	5	425	5	0	0	multi-exon	FALSE	canonical	3	112	junction_4	48.7185796180472	1447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8392	False	NA	-7	True	AATAAA	-17	NA	26011347	26009479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011026
ENSMUSG00000057411.10_26009480_26011772_1	chr17	-	641	5	NNC	ENSMUSG00000057411.10	novel	1321	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	90.9763018593304	346	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	9977	False	NA	-7	True	AATAAA	-17	NA	26011772	26009479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011701
ENSMUSG00000057411.10_26009480_26011875_1	chr17	-	744	5	NNC	ENSMUSG00000057411.10	novel	627	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	90.9763018593304	403	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	9984	False	NA	-7	True	AATAAA	-17	NA	26011875	26009479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011701
ENSMUSG00000057497.9_86342628_86344001_1	chr6	+	584	2	ISM	ENSMUSG00000057497.9	ENSMUST00000204893.2	448	3	-78	1779	0	0	5prime_fragment	FALSE	canonical	3	1864	junction_1	0	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAATTCCTTAAAATGTA	8617	False	NA	2	True	AATACA	-17	NA	86342627	86344001	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_86342802_86343591
ENSMUSG00000057497.9_86342706_86344007_1	chr6	+	512	2	ISM	ENSMUSG00000057497.9	ENSMUST00000204893.2	448	3	0	1773	0	6	5prime_fragment	FALSE	canonical	3	1864	junction_1	0	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCCTTAAAATGTATATTAA	8695	False	NA	8	True	TATAAA	-2	NA	86342705	86344007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_86342802_86343591
ENSMUSG00000057497.9_86342706_86345918_1	chr6	+	443	3	FSM	ENSMUSG00000057497.9	ENSMUST00000071492.9	1643	3	78	1122	0	138	multi-exon	FALSE	canonical	3	1740	junction_2	62	944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCGGGACTGCGGGCAGGC	8695	False	NA	16	True	AATAAA	-17	NA	86342705	86345918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_86342802_86343591_86343733_86345712
ENSMUSG00000057497.9_86342706_86347040_1	chr6	+	1537	4	NNC	ENSMUSG00000057497.9	novel	1643	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	528	junction_3	602.699114170763	2013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTCTTATGGGTAGTG	8695	False	NA	32	True	AATAAA	-16	NA	86342705	86347040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_86342802_86343591_86343733_86345712_86346151_86346178
ENSMUSG00000057522.16_95304924_95383840_1	chr11	+	2671	10	FSM	ENSMUSG00000057522.16	ENSMUST00000107722.8	3063	10	0	392	0	-392	multi-exon	FALSE	canonical	3	227	junction_3	21.694853460364	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTATCTCTGGTCT	NA	False	NA	5	True	TATAAA	-17	NA	95304923	95383840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
ENSMUSG00000057522.16_95304924_95383840_2	chr11	+	2471	11	FSM	ENSMUSG00000057522.16	ENSMUST00000107724.9	2881	11	18	392	0	-392	multi-exon	FALSE	canonical	3	59	junction_1	65.0422170593838	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTATCTCTGGTCT	NA	False	NA	5	True	TATAAA	-17	NA	95304923	95383840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95304958_95305157_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
ENSMUSG00000057554.14_12454298_12476387_2	chr13	-	2560	10	FSM	ENSMUSG00000057554.14	ENSMUST00000099821.10	2792	10	232	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	18.5718491337539	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAATACTCTCTGGAATA	NA	False	NA	-13	True	ATTAAA	-18	NA	12476387	12454297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476307
ENSMUSG00000057561.11_46730768_46742316_1	chr18	+	1906	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	-3	962	0	0	multi-exon	FALSE	canonical	3	1498	junction_1	106	5916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGAGAGGCTTTTTTT	NA	False	NA	27	True	AATAAA	-21	NA	46730767	46742316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_46730868_46731707_46731768_46740570
ENSMUSG00000057561.11_46730822_46742245_1	chr18	+	1781	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	51	1033	0	0	multi-exon	FALSE	canonical	3	1498	junction_1	106	4136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTCTTTTTAATATGTT	NA	False	NA	17	True	AATAAA	-18	NA	46730821	46742245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_46730868_46731707_46731768_46740570
ENSMUSG00000057572.16_129229488_129240826_1	chr4	+	995	7	FSM	ENSMUSG00000057572.16	ENSMUST00000141235.8	3833	7	0	2838	0	0	multi-exon	FALSE	canonical	3	561	junction_4	57.3866031598162	9119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGTAGCAGTGGTCT	NA	False	NA	17	True	TTTAAA	-24	NA	129229487	129240826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129229933_129234520_129234546_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
ENSMUSG00000057572.16_129229805_129240879_1	chr4	+	731	7	FSM	ENSMUSG00000057572.16	ENSMUST00000141235.8	3833	7	317	2785	0	53	multi-exon	FALSE	canonical	3	561	junction_4	57.3866031598162	8190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGTACTTGGTCATTTG	NA	False	NA	70	True	AATGAA	-22	NA	129229804	129240879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129229933_129234520_129234546_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
ENSMUSG00000057572.16_129229840_129240826_1	chr4	+	643	7	FSM	ENSMUSG00000057572.16	ENSMUST00000141235.8	3833	7	352	2838	0	0	multi-exon	FALSE	canonical	3	561	junction_4	57.3866031598162	6392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGTAGCAGTGGTCT	NA	False	NA	17	True	TTTAAA	-24	NA	129229839	129240826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129229933_129234520_129234546_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
ENSMUSG00000057594.13_120355692_120358297_1	chr11	-	1354	5	FSM	ENSMUSG00000057594.13	ENSMUST00000076921.7	911	5	129	-572	-6	0	multi-exon	FALSE	canonical	0	0	junction_4	70.9048658414922	881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTCTTGGCCTGGAGAGA	NA	False	NA	NA	False	CATAAA	-26	NA	120358297	120355691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120356648_120356809_120356926_120357479_120357594_120358007_120358067_120358188
ENSMUSG00000057594.13_120356264_120358297_1	chr11	-	782	5	FSM	ENSMUSG00000057594.13	ENSMUST00000076921.7	911	5	129	0	-6	0	multi-exon	FALSE	canonical	0	0	junction_4	70.9048658414922	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCTCCCACCAAGAAGTTG	NA	False	NA	62	True	NA	NA	NA	120358297	120356263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120356648_120356809_120356926_120357479_120357594_120358007_120358067_120358188
ENSMUSG00000057666.19_125138678_125142568_1	chr6	-	1391	7	FSM	ENSMUSG00000057666.19	ENSMUST00000118875.8	1420	7	168	-139	0	0	multi-exon	FALSE	canonical	3	6089	junction_1	1931.60920967179	274471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTCCCAGCCCAGGG	NA	False	NA	NA	False	NA	NA	NA	125142568	125138677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142514
ENSMUSG00000057666.19_125138817_125141893_1	chr6	-	1379	6	NNC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	2	473	junction_5	4193.47934774931	7824	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125141893	125138816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125141671
ENSMUSG00000057666.19_125138817_125141893_2	chr6	-	1235	6	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	832	junction_5	4068.19726168729	9230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125141893	125138816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125141815
ENSMUSG00000057666.19_125138817_125142568_1	chr6	-	1336	6	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	6089	junction_1	1950.20942465162	190580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142568	125138816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_125139065_125139174_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142514
ENSMUSG00000057666.19_125138817_125142568_2	chr6	-	1492	6	ISM	ENSMUSG00000057666.19	ENSMUST00000118875.8	1420	7	168	0	0	0	intron_retention	FALSE	canonical	3	6089	junction_1	2018.75426934533	91991	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142568	125138816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233
ENSMUSG00000057666.19_125138817_125142568_3	chr6	-	1426	7	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	204	junction_5	3916.70276933715	8812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142568	125138816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142059_125142275_125142514
ENSMUSG00000057666.19_125138817_125142568_4	chr6	-	1319	7	NNC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_6	4043.00748893142	167701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142568	125138816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142447
ENSMUSG00000057666.19_125138817_125142568_5	chr6	-	1368	7	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	245	junction_5	3903.40606251629	56448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142568	125138816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142117_125142275_125142514
ENSMUSG00000057666.19_125138817_125142568_6	chr6	-	1470	5	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	6089	junction_1	1441.13000367767	4137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142568	125138816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_125139065_125139174_125140004_125140101_125140400_125142233_125142275_125142514
ENSMUSG00000057667.8_19241323_19242292_1	chr7	-	268	2	NNC	ENSMUSG00000057667.8	novel	3188	2	NA	NA	0	-2912	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	185	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGCCGGTCGACCTGCC	NA	False	NA	NA	False	NA	NA	NA	19242292	19241322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19241536_19242237
ENSMUSG00000057672.17_84396720_84407726_1	chr8	-	1631	14	ISM	ENSMUSG00000057672.17	ENSMUST00000144258.8	2995	22	12963	0	492	0	3prime_fragment	FALSE	canonical	3	231	junction_13	30.2514120165338	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCAGCCTCTGTGTGCA	NA	False	NA	-18	True	TTTAAA	-33	NA	84407726	84396719	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_84396998_84397367_84397449_84397550_84397659_84397927_84398071_84398345_84398423_84398535_84398599_84398784_84398962_84399930_84400023_84400109_84400186_84400259_84400340_84404152_84404247_84404334_84404477_84404559_84404636_84407582
ENSMUSG00000057788.14_70746101_70755121_1	chr8	-	1534	13	FSM	ENSMUSG00000057788.14	ENSMUST00000008004.10	2137	13	18	585	-8	135	multi-exon	FALSE	canonical	3	250	junction_9	19.6148682268211	998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGACTTGAGAATGGGGT	9949	False	NA	-5	True	AGTAAA	-19	NA	70755121	70746100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70746338_70746477_70746550_70746648_70746738_70747336_70747412_70748016_70748115_70748224_70748302_70749032_70749109_70749552_70749694_70749780_70749969_70750525_70750648_70750730_70750817_70753628_70753753_70754972
ENSMUSG00000057789.15_27237036_27248061_1	chr17	-	577	4	Genic_Genomic	ENSMUSG00000057789.15	novel	2387	6	NA	NA	-78	1748	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGTGAGTGGGCTGCCCG	NA	False	NA	NA	False	NA	NA	NA	27248061	27237035	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_-_27237145_27241224_27241315_27244310_27244434_27247806
ENSMUSG00000057789.15_27238784_27247552_1	chr17	-	1956	6	FSM	ENSMUSG00000057789.15	ENSMUST00000078691.12	2387	6	431	0	0	0	multi-exon	TRUE	canonical	3	126	junction_3	5.45527267879434	1472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGCCTGGCATCTTTACA	NA	False	NA	0	True	AATAAA	-20	NA	27247552	27238783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241852_27244766_27244868_27247384
ENSMUSG00000057789.15_27238784_27247552_2	chr17	-	1642	5	FSM	ENSMUSG00000057789.15	ENSMUST00000143158.3	902	5	116	-856	0	0	multi-exon	FALSE	canonical	0	0	junction_1	55.9793488708113	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGCCTGGCATCTTTACA	NA	False	NA	0	True	AATAAA	-20	NA	27247552	27238783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27239877_27241412_27241557_27241715_27241852_27244766_27244868_27247384
ENSMUSG00000057789.15_27238784_27247668_1	chr17	-	2072	6	FSM	ENSMUSG00000057789.15	ENSMUST00000078691.12	2387	6	315	0	0	0	multi-exon	FALSE	canonical	3	126	junction_3	5.45527267879434	1491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGCCTGGCATCTTTACA	NA	False	NA	0	True	AATAAA	-20	NA	27247668	27238783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241852_27244766_27244868_27247384
ENSMUSG00000057789.15_27239640_27247552_1	chr17	-	1100	6	FSM	ENSMUSG00000057789.15	ENSMUST00000078691.12	2387	6	431	856	0	0	multi-exon	FALSE	canonical	3	126	junction_3	5.45527267879434	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCCACTAATTCCCAGAAAA	NA	False	NA	NA	False	NA	NA	NA	27247552	27239639	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241852_27244766_27244868_27247384
ENSMUSG00000057802.9_110816138_110819504_1	chr9	+	725	3	Fusion	ENSMUSG00000057802.9_ENSMUSG00000102060.2	novel	1067	2	NA	NA	869	2632	multi-exon	FALSE	non_canonical	0	0	junction_1	0	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGCCCTGGCTGCTTCCC	2129	False	NA	NA	False	NA	NA	NA	110816137	110819504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr9_+_110816383_110818512_110818732_110819243
ENSMUSG00000057836.13_72117949_72140623_1	chrX	-	1584	10	Fusion	ENSMUSG00000079845.9_ENSMUSG00000057836.13	novel	1584	9	NA	NA	0	2	multi-exon	TRUE	non_canonical	0	0	junction_1	589.847019296393	7941	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	72140623	72117948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chrX_-_72118054_72130003_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138551_72138689_72140586
ENSMUSG00000057836.13_72129899_72140623_1	chrX	-	1574	9	NNC	ENSMUSG00000057836.13	novel	1584	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	496.010190797528	4732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	-5	True	AATAAA	-18	NA	72140623	72129898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138561_72138689_72140586
ENSMUSG00000057836.13_72130567_72140623_1	chrX	-	901	9	FSM	ENSMUSG00000057836.13	ENSMUST00000074619.6	1645	9	78	666	0	-270	multi-exon	FALSE	canonical	3	586	junction_7	340.598531081683	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAGTGCAAATATGTCTG	NA	False	NA	-4	True	AATAAA	-18	NA	72140623	72130566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138566_72138689_72140586
ENSMUSG00000057841.6_115782581_115785708_1	chr6	-	402	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	0	115	0	-108	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	5156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCTGGCCATCAGAGTCA	NA	False	NA	-83	True	NA	NA	NA	115785708	115782580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
ENSMUSG00000057858.9_60187018_60215113_1	chr19	-	1941	8	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	-4	0	intron_retention	FALSE	canonical	3	98	junction_7	67.6669515090684	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTGGGAAGTCATTGTC	9789	False	NA	NA	False	AATGAA	-25	NA	60215113	60187017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214741
ENSMUSG00000057858.9_60187331_60215101_1	chr19	-	1694	8	FSM	ENSMUSG00000057858.9	ENSMUST00000065286.2	2035	8	28	313	0	0	multi-exon	FALSE	canonical	3	51	junction_7	81.0915330641484	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9801	False	NA	NA	False	AGTAAA	-14	NA	60215101	60187330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214663
ENSMUSG00000057858.9_60187331_60215101_2	chr19	-	1616	8	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	98	junction_7	67.6669515090684	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9801	False	NA	NA	False	AGTAAA	-14	NA	60215101	60187330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214741
ENSMUSG00000057858.9_60187331_60215113_2	chr19	-	1628	8	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	-4	0	intron_retention	FALSE	canonical	3	98	junction_7	67.6669515090684	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9789	False	NA	NA	False	AGTAAA	-14	NA	60215113	60187330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214741
ENSMUSG00000057858.9_60187331_60215113_4	chr19	-	1706	8	FSM	ENSMUSG00000057858.9	ENSMUST00000065286.2	2035	8	16	313	-4	0	multi-exon	FALSE	canonical	3	51	junction_7	81.0915330641484	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9789	False	NA	NA	False	AGTAAA	-14	NA	60215113	60187330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214663
ENSMUSG00000057858.9_60187331_60215113_5	chr19	-	1206	7	NIC	ENSMUSG00000057858.9	novel	951	8	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	116.899885942345	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9789	False	NA	NA	False	AGTAAA	-14	NA	60215113	60187330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60215075
ENSMUSG00000057858.9_60187331_60215113_6	chr19	-	1741	9	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	-4	0	intron_retention	FALSE	canonical	3	10	junction_8	106.243529214724	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9789	False	NA	NA	False	AGTAAA	-14	NA	60215113	60187330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60213296_60213332_60214663
ENSMUSG00000057863.7_56920416_56921246_1	chr17	+	371	4	NNC	ENSMUSG00000057863.7	novel	383	4	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4584.99225735442	44546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATGTGTGAGCT	NA	False	NA	2	True	AATAAA	-15	NA	56920415	56921246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_56920449_56920585_56920681_56920906_56921051_56921147
ENSMUSG00000057863.7_56920416_56921246_2	chr17	+	413	4	NNC	ENSMUSG00000057863.7	novel	383	4	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	5016.45339524516	133550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATGTGTGAGCT	NA	False	NA	2	True	AATAAA	-15	NA	56920415	56921246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_56920449_56920558_56920681_56920906_56921042_56921123
ENSMUSG00000057863.7_56920416_56921246_3	chr17	+	523	3	NIC	ENSMUSG00000057863.7	novel	383	4	NA	NA	0	3	intron_retention	FALSE	canonical	3	9970	junction_2	629.5	92749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATGTGTGAGCT	NA	False	NA	2	True	AATAAA	-15	NA	56920415	56921246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_56920681_56920906_56921042_56921123
ENSMUSG00000057863.7_56920416_56921246_4	chr17	+	612	3	NIC	ENSMUSG00000057863.7	novel	383	4	NA	NA	0	3	intron_retention	FALSE	canonical	3	5436	junction_1	2267	4163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATGTGTGAGCT	NA	False	NA	2	True	AATAAA	-15	NA	56920415	56921246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_56920449_56920585_56921042_56921123
ENSMUSG00000057863.7_56920416_56921246_5	chr17	+	694	2	ISM	ENSMUSG00000057863.7	ENSMUST00000080492.7	383	4	0	-3	0	3	intron_retention	FALSE	canonical	3	5436	junction_1	0	2853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATGTGTGAGCT	NA	False	NA	2	True	AATAAA	-15	NA	56920415	56921246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_56920449_56920585
ENSMUSG00000057863.7_56920416_56921246_6	chr17	+	365	4	NNC	ENSMUSG00000057863.7	novel	383	4	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4075.78420538783	24231	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATGTGTGAGCT	NA	False	NA	2	True	AATAAA	-15	NA	56920415	56921246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_56920449_56920585_56920681_56920927_56921042_56921123
ENSMUSG00000057933.11_78238300_78249903_1	chr9	-	935	7	NIC	ENSMUSG00000057933.11	novel	870	7	NA	NA	-3869	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_6	12.0369800568452	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTCATAAGTTCTA	NA	False	NA	1	True	AATAAA	-17	NA	78249903	78238299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_78238532_78239368_78239501_78241042_78241185_78244840_78244974_78245926_78245979_78249111_78249221_78249768
ENSMUSG00000057982.9_22137010_22147176_1	chr9	+	980	2	FSM	ENSMUSG00000057982.9	ENSMUST00000213350.2	597	2	-9	-374	0	-338	multi-exon	FALSE	canonical	3	166	junction_1	0	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCTGTGGTCATGGTG	740	False	NA	NA	False	NA	NA	NA	22137009	22147176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_22137129_22146315
ENSMUSG00000057982.9_22137010_22150989_1	chr9	+	1601	5	FSM	ENSMUSG00000057982.9	ENSMUST00000215618.2	1313	5	-38	-250	0	0	multi-exon	FALSE	canonical	3	112	junction_4	21.3717102731625	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCCTGGCCGGCCATGC	740	False	NA	34	True	NA	NA	NA	22137009	22150989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837
ENSMUSG00000058028.15_6225277_6242422_1	chr7	+	1806	5	NIC	ENSMUSG00000058028.15	novel	1980	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	3.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCATTGATTGACTTATT	3080	False	NA	NA	False	ATTAAA	-22	NA	6225276	6242422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_6225336_6233070_6233538_6234335_6234537_6236813_6236968_6241497
ENSMUSG00000058076.13_170956733_170978172_1	chr1	-	1172	6	FSM	ENSMUSG00000058076.13	ENSMUST00000111336.10	3171	6	0	1999	0	243	multi-exon	TRUE	canonical	3	578	junction_5	147.434866975217	7567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGACTCTTTGGAATCT	456	False	NA	-6	True	ATTAAA	-16	NA	170978172	170956732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_170957475_170963561_170963726_170966262_170966325_170971126_170971229_170973324_170973382_170978127
ENSMUSG00000058076.13_170956838_170978172_1	chr1	-	1067	6	FSM	ENSMUSG00000058076.13	ENSMUST00000111336.10	3171	6	0	2104	0	138	multi-exon	FALSE	canonical	3	578	junction_5	147.434866975217	2541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTGTTTTTCATTTCTA	456	False	NA	-2	True	NA	NA	NA	170978172	170956837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_170957475_170963561_170963726_170966262_170966325_170971126_170971229_170973324_170973382_170978127
ENSMUSG00000058135.13_107919577_107924925_1	chr3	-	1232	7	ISM	ENSMUSG00000058135.13	ENSMUST00000004140.11	1289	8	364	6	197	0	3prime_fragment	FALSE	canonical	3	592	junction_3	57.9300344285146	989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCCATGAGTTGTGTCT	6947	False	NA	-10	True	AATAAA	-12	NA	107924925	107919576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_107920095_107922068_107922180_107922260_107922357_107923643_107923745_107923834_107923917_107924199_107924265_107924666
ENSMUSG00000058135.13_107919577_107925134_1	chr3	-	1123	8	NNC	ENSMUSG00000058135.13	novel	1289	8	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	236.336149393621	2768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCCATGAGTTGTGTCT	6738	False	NA	-10	True	AATAAA	-12	NA	107925134	107919576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_107920095_107922068_107922180_107922260_107922348_107923639_107923745_107923834_107923917_107924199_107924265_107924666_107924743_107925055
ENSMUSG00000058135.13_107919577_107925134_2	chr3	-	1122	8	NNC	ENSMUSG00000058135.13	novel	1289	8	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	234.999348674738	3291	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCCATGAGTTGTGTCT	6738	False	NA	-10	True	AATAAA	-12	NA	107925134	107919576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_107920095_107922068_107922180_107922260_107922357_107923643_107923745_107923834_107923917_107924199_107924265_107924672_107924743_107925055
ENSMUSG00000058135.13_107919577_107925134_3	chr3	-	1128	8	FSM	ENSMUSG00000058135.13	ENSMUST00000004140.11	1289	8	155	6	-12	0	multi-exon	FALSE	canonical	3	592	junction_3	56.1666616201374	3506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCCATGAGTTGTGTCT	6738	False	NA	-10	True	AATAAA	-12	NA	107925134	107919576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_107920095_107922068_107922180_107922260_107922357_107923643_107923745_107923834_107923917_107924199_107924265_107924666_107924743_107925055
ENSMUSG00000058147.2_72277685_72308997_1	chrX	-	1583	10	Fusion	ENSMUSG00000058147.2_ENSMUSG00000031362.18	novel	1584	9	NA	NA	-1	0	multi-exon	TRUE	canonical	0	0	junction_1	515.324517197359	3174	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72308997	72277684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chrX_-_72277817_72298279_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
ENSMUSG00000058147.2_72277685_72308997_2	chrX	-	1584	10	Fusion	ENSMUSG00000058147.2_ENSMUSG00000031362.18	novel	1584	9	NA	NA	-1	0	multi-exon	TRUE	canonical	0	0	junction_1	515.324517197359	6299	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72308997	72277684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chrX_-_72277787_72298248_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
ENSMUSG00000058147.2_72298146_72308997_1	chrX	-	1583	9	NNC	ENSMUSG00000058147.2	novel	1584	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	545.730230402348	2931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	-8	True	AATAAA	-16	NA	72308997	72298145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72299029_72299124_72299225_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
ENSMUSG00000058147.2_72298146_72308997_2	chrX	-	1576	9	NNC	ENSMUSG00000058147.2	novel	1584	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	545.411069171685	3938	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	-8	True	AATAAA	-16	NA	72308997	72298145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72299035_72299128_72299216_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
ENSMUSG00000058147.2_72298146_72308997_3	chrX	-	1578	9	NNC	ENSMUSG00000058147.2	novel	1584	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	468.995852193812	3684	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	-8	True	AATAAA	-16	NA	72308997	72298145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306092_72306921_72307059_72308956
ENSMUSG00000058173.13_15404859_15456556_1	chr9	+	866	3	FSM	ENSMUSG00000058173.13	ENSMUST00000215907.2	994	3	131	-3	131	0	multi-exon	FALSE	canonical	2	6	junction_1	1	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTTCTCTTGTTTG	NA	False	NA	11	True	AATAAA	-19	NA	15404858	15456556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_15404926_15436923_15437001_15455834
ENSMUSG00000058174.8_37768889_37769377_1	chr3	-	451	2	NNC	ENSMUSG00000058174.8	novel	1098	2	NA	NA	9101	-414	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	17858	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCGGCGCCACGGGCCC	NA	False	NA	NA	False	NA	NA	NA	37769377	37768888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_37769051_37769088
ENSMUSG00000058174.8_37768889_37769377_2	chr3	-	468	2	NNC	ENSMUSG00000058174.8	novel	1098	2	NA	NA	9101	-414	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	28376	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCGGCGCCACGGGCCC	NA	False	NA	NA	False	NA	NA	NA	37769377	37768888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_37769132_37769152
ENSMUSG00000058174.8_37768889_37769377_3	chr3	-	439	2	NNC	ENSMUSG00000058174.8	novel	1098	2	NA	NA	9101	-414	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3258	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCGGCGCCACGGGCCC	NA	False	NA	NA	False	NA	NA	NA	37769377	37768888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_37769137_37769186
ENSMUSG00000058174.8_37768889_37769377_4	chr3	-	464	2	NNC	ENSMUSG00000058174.8	novel	1098	2	NA	NA	9101	-414	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	18563	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCGGCGCCACGGGCCC	NA	False	NA	NA	False	NA	NA	NA	37769377	37768888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_37769122_37769146
ENSMUSG00000058174.8_37768889_37769377_5	chr3	-	467	2	NNC	ENSMUSG00000058174.8	novel	1098	2	NA	NA	9101	-414	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	43689	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCGGCGCCACGGGCCC	NA	False	NA	NA	False	NA	NA	NA	37769377	37768888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_37769297_37769318
ENSMUSG00000058186.14_145311760_145427736_2	chr4	+	727	6	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-13	-1474	multi-exon	FALSE	canonical	0	0	junction_1	194.050921152155	327	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCTTCTATCATTAGTC	NA	False	NA	NA	False	TATAAA	-21	NA	145311759	145427736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_145311888_145312050_145312083_145314001_145314095_145422720_145422806_145425813_145425941_145427474
ENSMUSG00000058186.14_145311760_145434487_1	chr4	+	1286	7	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-13	3476	multi-exon	FALSE	canonical	0	0	junction_6	158.820303767777	600	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	145311759	145434487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_145312083_145314001_145314095_145319501_145319572_145399301_145399395_145422720_145422806_145425813_145425941_145433992
ENSMUSG00000058186.14_145311760_145434487_2	chr4	+	1366	8	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-13	3476	multi-exon	FALSE	canonical	0	0	junction_7	152.773274722341	670	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	145311759	145434487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_145312083_145314001_145314095_145319501_145319572_145399301_145399395_145406465_145406546_145422720_145422806_145425813_145425941_145433992
ENSMUSG00000058186.14_145397255_145427736_1	chr4	+	731	5	FSM	ENSMUSG00000058186.14	ENSMUST00000105738.9	4006	5	0	3275	0	-1474	multi-exon	FALSE	canonical	3	18	junction_2	173.168992605489	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCTTCTATCATTAGTC	NA	False	NA	NA	False	TATAAA	-21	NA	145397254	145427736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_145397419_145399301_145399395_145422720_145422806_145425813_145425941_145427474
ENSMUSG00000058186.14_145401070_145427736_1	chr4	+	615	4	NNC	ENSMUSG00000058186.14	novel	1938	3	NA	NA	3815	-1474	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	187.21289129402	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCTTCTATCATTAGTC	NA	False	NA	NA	False	TATAAA	-21	NA	145401069	145427736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_145401211_145422720_145422806_145425813_145425941_145427474
ENSMUSG00000058216.14_4107477_4109087_1	chr19	-	895	5	ISM	ENSMUSG00000058216.14	ENSMUST00000076451.7	685	6	208	-1	208	0	3prime_fragment	FALSE	canonical	3	57	junction_3	9.36416040016402	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTGCAGGGCTTGTCCT	9432	False	NA	NA	False	NA	NA	NA	4109087	4107476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734
ENSMUSG00000058216.14_4107477_4109647_1	chr19	-	696	6	NNC	ENSMUSG00000058216.14	novel	708	7	NA	NA	-78	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	26.460536653666	318	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTGCAGGGCTTGTCCT	8872	False	NA	NA	False	NA	NA	NA	4109647	4107476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734_4108842_4109600
ENSMUSG00000058240.15_91486210_91525511_1	chr16	-	1613	13	FSM	ENSMUSG00000058240.15	ENSMUST00000073466.13	1965	13	352	0	0	0	multi-exon	FALSE	canonical	1	405	junction_2	358.43629334777	7617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTCTGAATTTCTCCGA	9180	False	NA	NA	False	TTTAAA	-18	NA	91525511	91486209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000058240.15_91486414_91525511_1	chr16	-	1410	13	NNC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	451.651844775253	1041	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTGCTTTCAGCAAAAG	9180	False	NA	-22	True	TATAAA	-16	NA	91525511	91486413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_91486804_91487591_91487626_91489473_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000058240.15_91486494_91525511_1	chr16	-	1329	13	FSM	ENSMUSG00000058240.15	ENSMUST00000073466.13	1965	13	352	284	0	0	multi-exon	FALSE	canonical	1	405	junction_2	358.43629334777	3369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAGGGGACATTCCAAAA	9180	False	NA	-24	True	NA	NA	NA	91525511	91486493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000058240.15_91486494_91525511_2	chr16	-	1330	13	NNC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	451.651844775253	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAGGGGACATTCCAAAA	9180	False	NA	-24	True	NA	NA	NA	91525511	91486493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_91486804_91487591_91487626_91489473_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000058240.15_91491346_91525511_1	chr16	-	956	10	FSM	ENSMUSG00000058240.15	ENSMUST00000114023.3	1154	10	78	120	0	-114	multi-exon	FALSE	canonical	3	81	junction_1	469.417790170329	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTCTAGAGTACATTTT	9180	False	NA	2	True	AATAAA	-25	NA	91525511	91491345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91491554_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000058240.15_91491346_91525511_2	chr16	-	1551	9	ISM	ENSMUSG00000058240.15	ENSMUST00000073466.13	1965	13	352	5136	0	-114	5prime_fragment	FALSE	canonical	3	1431	junction_2	88.070195724774	588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTCTAGAGTACATTTT	9180	False	NA	2	True	AATAAA	-25	NA	91525511	91491345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000058240.15_91500328_91525511_1	chr16	-	578	7	NNC	ENSMUSG00000058240.15	novel	762	6	NA	NA	0	3403	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	570.565630658638	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGACAATGTCTTTTTCTC	9180	False	NA	NA	False	NA	NA	NA	91525511	91500327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_91500503_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000058240.15_91503907_91525511_1	chr16	-	609	6	FSM	ENSMUSG00000058240.15	ENSMUST00000141664.9	762	6	-23	176	0	-176	multi-exon	FALSE	canonical	3	1466	junction_2	55.2268050859363	1093	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTGTGTGTACTCG	9180	False	NA	NA	False	TATAAA	-19	NA	91525511	91503906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000058258.15_8935979_8941263_1	chr13	+	1361	5	FSM	ENSMUSG00000058258.15	ENSMUST00000169314.9	3027	5	442	1224	0	-131	multi-exon	FALSE	canonical	3	487	junction_1	56.3576747213722	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTTCAGACAGGATGATT	NA	False	NA	NA	False	NA	NA	NA	8935978	8941263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_8936033_8936767_8936941_8937520_8937614_8937958_8938090_8940353
ENSMUSG00000058267.14_160022785_160027390_1	chr1	+	649	3	FSM	ENSMUSG00000058267.14	ENSMUST00000135680.8	2999	3	0	2350	0	0	multi-exon	FALSE	canonical	3	2655	junction_1	51	17130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGTCTTTCCTTCAAGT	NA	False	NA	17	True	AATAAA	-17	NA	160022784	160027390	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160022882_160024515_160024675_160026997
ENSMUSG00000058291.15_138604382_138618000_1	chr5	-	2258	6	FSM	ENSMUSG00000058291.15	ENSMUST00000110905.9	4749	6	23	2468	0	0	multi-exon	FALSE	canonical	3	54	junction_4	14.2632394637403	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTTGATCTTTGTTTG	1754	False	NA	-9	True	AATAAA	-10	NA	138618000	138604381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138614731_138614828_138615316_138615430_138617870
ENSMUSG00000058328.14_72151712_72161308_1	chrX	-	1179	9	FSM	ENSMUSG00000058328.14	ENSMUST00000078574.12	1650	9	0	471	0	303	multi-exon	FALSE	canonical	3	269	junction_2	77.2438306598009	2460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161308	72151711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161207
ENSMUSG00000058328.14_72151712_72161308_2	chrX	-	1102	9	NIC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	0	303	combination_of_known_junctions	FALSE	canonical	3	112	junction_8	115.823141038395	1202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161308	72151711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161284
ENSMUSG00000058328.14_72151712_72161308_3	chrX	-	1088	8	NNC	ENSMUSG00000058328.14	novel	1474	8	NA	NA	0	303	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_7	138.166418436874	1894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161308	72151711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161199
ENSMUSG00000058328.14_72151712_72161308_4	chrX	-	1080	8	NIC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	0	303	combination_of_known_junctions	FALSE	canonical	3	293	junction_4	76.0110088696878	1955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161308	72151711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161207
ENSMUSG00000058328.14_72151712_72161308_5	chrX	-	1003	8	FSM	ENSMUSG00000058328.14	ENSMUST00000114521.8	1474	8	0	471	0	303	multi-exon	FALSE	canonical	3	112	junction_7	121.461844180947	954	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161308	72151711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161284
ENSMUSG00000058328.14_72151807_72161308_1	chrX	-	985	8	NIC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	0	208	combination_of_known_junctions	FALSE	canonical	3	293	junction_4	76.0110088696878	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATTTGACTTTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	72161308	72151806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161207
ENSMUSG00000058351.12_30846462_30850870_1	chr14	-	610	2	FSM	ENSMUSG00000058351.12	ENSMUST00000090205.5	426	2	-10	-174	0	0	multi-exon	FALSE	canonical	3	53	junction_1	0	1769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATTTCAGCCATTTT	NA	False	NA	-11	True	AATAAA	-18	NA	30850870	30846461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_30846791_30850589
ENSMUSG00000058355.9_80428376_80438306_1	chr8	-	594	5	ISM	ENSMUSG00000058355.9	ENSMUST00000211509.2	3030	16	-7	15541	-7	6325	5prime_fragment	FALSE	canonical	3	1188	junction_1	118.083392143011	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTGGATCTTTTATGG	NA	False	NA	NA	False	ATTAAA	-16	NA	80438306	80428375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
ENSMUSG00000058392.14_32255377_32279579_1	chr17	+	2311	16	FSM	ENSMUSG00000058392.14	ENSMUST00000081339.13	4874	16	303	2260	0	32	multi-exon	TRUE	canonical	3	488	junction_12	76.5992747282172	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGGCTTTTTAATTACTT	NA	False	NA	15	True	TATAAA	-15	NA	32255376	32279579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274078_32274099_32274884_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
ENSMUSG00000058392.14_32255377_32279579_2	chr17	+	2302	15	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	0	32	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	181.227236431199	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGGCTTTTTAATTACTT	NA	False	NA	15	True	TATAAA	-15	NA	32255376	32279579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272940_32274884_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
ENSMUSG00000058407.13_38026190_38036305_1	chr1	-	1315	5	FSM	ENSMUSG00000058407.13	ENSMUST00000195247.6	1699	5	669	-285	0	285	multi-exon	FALSE	canonical	3	195	junction_4	302.235318088406	3488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGGAACTCCATTGGCT	NA	False	NA	-7	True	ATTAAA	-18	NA	38036305	38026189	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036244
ENSMUSG00000058407.13_38026190_38036305_2	chr1	-	1370	5	FSM	ENSMUSG00000058407.13	ENSMUST00000162031.8	3381	5	91	1920	0	285	multi-exon	FALSE	canonical	3	675	junction_1	112.632976965008	5580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGGAACTCCATTGGCT	NA	False	NA	-7	True	ATTAAA	-18	NA	38036305	38026189	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036189
ENSMUSG00000058407.13_38026477_38036014_1	chr1	-	1008	5	FSM	ENSMUSG00000058407.13	ENSMUST00000195032.6	1444	5	683	-247	-275	0	multi-exon	FALSE	canonical	3	37	junction_4	367.038400579558	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTCACATGTCTGTTTTT	NA	False	NA	-5	True	NA	NA	NA	38036014	38026476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38035973
ENSMUSG00000058407.13_38026477_38036305_1	chr1	-	1083	5	FSM	ENSMUSG00000058407.13	ENSMUST00000162031.8	3381	5	91	2207	0	0	multi-exon	FALSE	canonical	3	675	junction_1	112.632976965008	4894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTCACATGTCTGTTTTT	NA	False	NA	-5	True	NA	NA	NA	38036305	38026476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036189
ENSMUSG00000058407.13_38026477_38036305_2	chr1	-	1028	5	FSM	ENSMUSG00000058407.13	ENSMUST00000195247.6	1699	5	669	2	0	0	multi-exon	FALSE	canonical	3	195	junction_4	302.235318088406	2275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTCACATGTCTGTTTTT	NA	False	NA	-5	True	NA	NA	NA	38036305	38026476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036244
ENSMUSG00000058407.13_38026724_38036305_1	chr1	-	836	5	FSM	ENSMUSG00000058407.13	ENSMUST00000162031.8	3381	5	91	2454	0	0	multi-exon	FALSE	canonical	3	675	junction_1	112.632976965008	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCGTCTGTCTGTCTGT	NA	False	NA	NA	False	TTTAAA	-2	NA	38036305	38026723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036189
ENSMUSG00000058440.15_30048041_30144859_1	chr6	+	1904	13	NIC	ENSMUSG00000058440.15	novel	1879	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	175.389309030574	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTATGGTTTGGGCTTTGG	26	True	NA	7	True	AATAAA	-23	NA	30048040	30144859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
ENSMUSG00000058503.12_3593838_3620238_1	chr5	+	1948	11	FSM	ENSMUSG00000058503.12	ENSMUST00000199666.5	1450	11	0	-498	0	0	multi-exon	FALSE	canonical	0	0	junction_10	76.7604064606227	1047	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTGTCTTTGTGTATC	NA	False	NA	19	True	AGTAAA	-15	NA	3593837	3620238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609137_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
ENSMUSG00000058503.12_3593838_3620238_2	chr5	+	1989	11	FSM	ENSMUSG00000058503.12	ENSMUST00000115527.8	1491	11	0	-498	0	0	multi-exon	FALSE	canonical	0	0	junction_10	59.9796632201282	1150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTGTCTTTGTGTATC	NA	False	NA	19	True	AGTAAA	-15	NA	3593837	3620238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609096_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
ENSMUSG00000058546.9_78071761_78074410_1	chr11	-	536	5	NNC	ENSMUSG00000058546.9	novel	560	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	7582.02724787375	7163	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	5963	False	NA	-14	True	CATAAA	-1	NA	78074410	78071760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_78071824_78071979_78072050_78072242_78072420_78073628_78073789_78074344
ENSMUSG00000058546.9_78071761_78074410_2	chr11	-	541	5	NNC	ENSMUSG00000058546.9	novel	560	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6740.7975557422	18070	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	5963	False	NA	-14	True	CATAAA	-1	NA	78074410	78071760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_78071824_78071979_78072050_78072242_78072420_78073647_78073813_78074344
ENSMUSG00000058546.9_78071761_78074410_3	chr11	-	548	5	NNC	ENSMUSG00000058546.9	novel	560	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	7582.02724787375	33724	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	5963	False	NA	-14	True	CATAAA	-1	NA	78074410	78071760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_78071824_78071979_78072050_78072242_78072420_78073628_78073813_78074356
ENSMUSG00000058546.9_78071761_78074410_4	chr11	-	587	5	NNC	ENSMUSG00000058546.9	novel	560	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	677	junction_4	7315.52547668313	31139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	5963	False	NA	-14	True	CATAAA	-1	NA	78074410	78071760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_78071824_78071979_78072050_78072242_78072420_78073628_78073813_78074317
ENSMUSG00000058546.9_78071761_78074410_5	chr11	-	547	5	NNC	ENSMUSG00000058546.9	novel	560	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6740.7975557422	47899	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	5963	False	NA	-14	True	CATAAA	-1	NA	78074410	78071760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_78071824_78071979_78072050_78072242_78072407_78073628_78073813_78074344
ENSMUSG00000058546.9_78071761_78074410_6	chr11	-	542	5	NNC	ENSMUSG00000058546.9	novel	560	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	7582.02724787375	18864	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	5963	False	NA	-14	True	CATAAA	-1	NA	78074410	78071760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_78071824_78071979_78072050_78072242_78072420_78073628_78073795_78074344
ENSMUSG00000058546.9_78071761_78074410_7	chr11	-	716	4	NIC	ENSMUSG00000058546.9	novel	560	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	11765	junction_3	3188.75705495975	5041	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	5963	False	NA	-14	True	CATAAA	-1	NA	78074410	78071760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_78072050_78072242_78072420_78073628_78073813_78074344
ENSMUSG00000058546.9_78071761_78074410_8	chr11	-	550	5	NNC	ENSMUSG00000058546.9	novel	560	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6523.72004208488	41296	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	5963	False	NA	-14	True	CATAAA	-1	NA	78074410	78071760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_78071824_78071979_78072050_78072252_78072420_78073628_78073813_78074344
ENSMUSG00000058550.16_48104098_48114600_1	chr16	+	1374	7	NIC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_3	197.131653695922	1345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104097	48114600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_48104205_48108240_48108359_48109401_48109464_48109690_48109742_48111376_48111678_48113273_48113470_48114061
ENSMUSG00000058550.16_48104150_48114600_1	chr16	+	1409	7	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_3	198.172834218574	2742	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104149	48114600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_48104205_48108240_48108359_48109401_48109551_48109690_48109742_48111376_48111678_48113273_48113470_48114061
ENSMUSG00000058550.16_48104150_48114600_2	chr16	+	1420	7	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	185.027400373266	2495	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104149	48114600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_48104205_48108240_48108359_48109401_48109569_48109690_48109742_48111376_48111671_48113273_48113470_48114061
ENSMUSG00000058558.13_108048438_108055921_1	chr5	+	1010	8	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2629.13933306188	3259	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGCTGTTATT	NA	False	NA	3	True	AATAAA	-21	NA	108048437	108055921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052746_108055054_108055144_108055762
ENSMUSG00000058558.13_108048438_108055921_2	chr5	+	1006	8	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2650.35980614724	6719	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGCTGTTATT	NA	False	NA	3	True	AATAAA	-21	NA	108048437	108055921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051153_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
ENSMUSG00000058558.13_108048438_108055921_3	chr5	+	1013	8	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2639.46340403206	10086	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGCTGTTATT	NA	False	NA	3	True	AATAAA	-21	NA	108048437	108055921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051258_108051531_108051735_108052582_108052761_108055054_108055144_108055762
ENSMUSG00000058558.13_108048438_108055921_4	chr5	+	1014	8	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2639.46340403206	12635	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGCTGTTATT	NA	False	NA	3	True	AATAAA	-21	NA	108048437	108055921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051542_108051735_108052582_108052761_108055054_108055144_108055762
ENSMUSG00000058558.13_108048438_108055921_5	chr5	+	1873	7	NIC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	7026	junction_3	376.251688811271	6068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGCTGTTATT	NA	False	NA	3	True	AATAAA	-21	NA	108048437	108055921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108052761_108055054_108055144_108055762
ENSMUSG00000058558.13_108048438_108055921_6	chr5	+	1011	8	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	2575.06198855444	6698	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGCTGTTATT	NA	False	NA	3	True	AATAAA	-21	NA	108048437	108055921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055130_108055762
ENSMUSG00000058558.13_108048438_108055921_7	chr5	+	1020	8	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2650.35980614724	19270	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGCTGTTATT	NA	False	NA	3	True	AATAAA	-21	NA	108048437	108055921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051139_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
ENSMUSG00000058558.13_108048740_108055921_1	chr5	+	1148	8	NIC	ENSMUSG00000058558.13	novel	834	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_1	2625.0489752477	8559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGCTGTTATT	NA	False	NA	3	True	AATAAA	-21	NA	108048739	108055921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_108048938_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
ENSMUSG00000058558.13_108049028_108055921_1	chr5	+	1004	8	NNC	ENSMUSG00000058558.13	novel	1024	3	NA	NA	288	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	2643.40926279156	7738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGCTGTTATT	NA	False	NA	3	True	AATAAA	-21	NA	108049027	108055921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_108049082_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
ENSMUSG00000058579.6_141542273_141546395_1	chr4	-	350	3	FSM	ENSMUSG00000058579.6	ENSMUST00000127962.2	468	3	118	0	118	0	multi-exon	FALSE	canonical	3	93	junction_1	12.5	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	653	False	NA	-2	True	AATAAA	-18	NA	141546395	141542272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_141542367_141545175_141545329_141546292
ENSMUSG00000058579.6_141542273_141546605_1	chr4	-	462	4	NNC	ENSMUSG00000058579.6	novel	1070	8	NA	NA	-92	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	45.7019328548221	143	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	443	False	NA	-2	True	AATAAA	-18	NA	141546605	141542272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_141542367_141545175_141545329_141546292_141546439_141546536
ENSMUSG00000058579.6_141542273_141546657_1	chr4	-	612	3	FSM	ENSMUSG00000058579.6	ENSMUST00000127962.2	468	3	-144	0	-144	0	multi-exon	FALSE	canonical	3	93	junction_1	12.5	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	391	False	NA	-2	True	AATAAA	-18	NA	141546657	141542272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_141542367_141545175_141545329_141546292
ENSMUSG00000058579.6_141542273_141546748_1	chr4	-	605	4	NNC	ENSMUSG00000058579.6	novel	1070	8	NA	NA	-235	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	45.7019328548221	222	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	300	False	NA	-2	True	AATAAA	-18	NA	141546748	141542272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_141542367_141545175_141545329_141546292_141546439_141546536
ENSMUSG00000058579.6_141542273_141546748_2	chr4	-	621	4	NNC	ENSMUSG00000058579.6	novel	1070	8	NA	NA	-235	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_3	48.9239773072014	238	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	300	False	NA	-2	True	AATAAA	-18	NA	141546748	141542272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_141542367_141545175_141545329_141546292_141546439_141546520
ENSMUSG00000058586.13_82984490_83000872_1	chr15	+	1289	11	NNC	ENSMUSG00000058586.13	novel	1371	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	25.311854930052	559	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTTCCAAGTGGCTGTT	NA	False	NA	14	True	AATAAA	-15	NA	82984489	83000872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_82984549_82985844_82985995_82986072_82986187_82986499_82986568_82987134_82987210_82988509_82988623_82989811_82989892_82996410_82996446_82998557_82998641_82999767_82999865_83000457
ENSMUSG00000058586.13_82984490_83000872_2	chr15	+	1410	13	NNC	ENSMUSG00000058586.13	novel	1371	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_7	28.8761724148706	519	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTTCCAAGTGGCTGTT	NA	False	NA	14	True	AATAAA	-15	NA	82984489	83000872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_82984549_82985844_82985995_82986072_82986187_82986499_82986542_82986825_82986846_82987134_82987210_82988509_82988623_82989006_82989134_82989811_82989892_82996410_82996446_82998557_82998641_82999767_82999865_83000457
ENSMUSG00000058586.13_83000049_83006952_1	chr15	+	1877	8	Genic_Genomic	ENSMUSG00000058586.13	novel	1371	12	NA	NA	361	6077	multi-exon	TRUE	non_canonical	0	0	junction_1	0	806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGACGGCTGGGAGTTC	NA	False	NA	NA	False	NA	NA	NA	83000048	83006952	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_+_83000335_83000355_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
ENSMUSG00000058586.13_83000049_83006952_2	chr15	+	1873	8	Genic_Genomic	ENSMUSG00000058586.13	novel	1371	12	NA	NA	361	6077	multi-exon	FALSE	non_canonical	0	0	junction_1	0	974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGACGGCTGGGAGTTC	NA	False	NA	NA	False	NA	NA	NA	83000048	83006952	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_+_83000327_83000351_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
ENSMUSG00000058586.13_83000049_83006952_3	chr15	+	1863	8	Genic_Genomic	ENSMUSG00000058586.13	novel	1371	12	NA	NA	361	6077	multi-exon	FALSE	non_canonical	0	0	junction_2	309.685488909016	4896	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGACGGCTGGGAGTTC	NA	False	NA	NA	False	NA	NA	NA	83000048	83006952	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_+_83000330_83000355_83001173_83001749_83001949_83002277_83002376_83003385_83003495_83004092_83004219_83006032_83006176_83006862
ENSMUSG00000058586.13_83000049_83006952_4	chr15	+	1898	7	NIC	ENSMUSG00000058586.13	novel	578	2	NA	NA	361	6077	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1041	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGACGGCTGGGAGTTC	NA	False	NA	NA	False	NA	NA	NA	83000048	83006952	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
ENSMUSG00000058587.10_75405398_75466939_1	chr9	-	3258	10	FSM	ENSMUSG00000058587.10	ENSMUST00000072232.9	3667	10	0	409	0	-409	multi-exon	FALSE	canonical	3	422	junction_2	36.4461381720248	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCAGACTGTTGGTCATT	NA	False	NA	0	True	AATAAA	-19	NA	75466939	75405397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75466781
ENSMUSG00000058587.10_75406928_75466939_1	chr9	-	1728	10	FSM	ENSMUSG00000058587.10	ENSMUST00000072232.9	3667	10	0	1939	0	225	multi-exon	FALSE	canonical	3	422	junction_2	36.4461381720248	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGGCTCAGAATCCATTAT	NA	False	NA	3	True	AATAAA	-18	NA	75466939	75406927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75466781
ENSMUSG00000058594.16_11747386_11753300_1	chr2	-	824	4	ISM	ENSMUSG00000058594.16	ENSMUST00000071564.14	3567	21	29093	0	740	0	3prime_fragment	FALSE	canonical	3	293	junction_3	11.7756811551038	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCAGTACTGTCATTT	NA	False	NA	-2	True	ATTAAA	-35	NA	11753300	11747385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174
ENSMUSG00000058594.16_11747386_11782361_1	chr2	-	3563	21	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	0	0	intron_retention	FALSE	canonical	3	88	junction_20	47.1269296687149	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCAGTACTGTCATTT	NA	False	NA	-2	True	ATTAAA	-35	NA	11782361	11747385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782214
ENSMUSG00000058600.14_34440651_34443337_1	chr15	-	538	4	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	31	0	intron_retention	FALSE	canonical	1	4	junction_3	2250.92904276336	11999	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	392	False	NA	-20	True	AATAAA	-27	NA	34443337	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34440751_34441377_34441509_34442780_34442921_34443170
ENSMUSG00000058600.14_34440651_34443337_10	chr15	-	681	4	NIC	ENSMUSG00000058600.14	novel	886	5	NA	NA	31	0	intron_retention	FALSE	canonical	3	3551	junction_3	649.375084215586	2211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	392	False	NA	-20	True	AATAAA	-27	NA	34443337	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_34440751_34441377_34441509_34442780_34443224_34443330
ENSMUSG00000058600.14_34440651_34443337_11	chr15	-	539	4	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	31	0	intron_retention	FALSE	non_canonical	0	0	junction_1	2555.15961667107	8086	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	392	False	NA	-20	True	AATAAA	-27	NA	34443337	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34440751_34441382_34441509_34442780_34442927_34443170
ENSMUSG00000058600.14_34440651_34443337_2	chr15	-	450	5	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2528.22833225166	4267	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	392	False	NA	-20	True	AATAAA	-27	NA	34443337	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34440751_34441382_34441509_34442780_34442927_34443170_34443224_34443312
ENSMUSG00000058600.14_34440651_34443337_3	chr15	-	449	5	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_3	2203.73346562147	6765	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	392	False	NA	-20	True	AATAAA	-27	NA	34443337	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34440751_34441377_34441509_34442780_34442921_34443170_34443224_34443312
ENSMUSG00000058600.14_34440651_34443337_4	chr15	-	429	5	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1958.71327342723	3017	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	392	False	NA	-20	True	AATAAA	-27	NA	34443337	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34440751_34441377_34441509_34442780_34442921_34443172_34443224_34443330
ENSMUSG00000058600.14_34440651_34443337_5	chr15	-	454	5	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2233.85031951561	10239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	392	False	NA	-20	True	AATAAA	-27	NA	34443337	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170_34443241_34443330
ENSMUSG00000058600.14_34440651_34443337_6	chr15	-	531	4	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	31	0	intron_retention	FALSE	canonical	0	0	junction_2	2413.95291310056	4239	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	392	False	NA	-20	True	AATAAA	-27	NA	34443337	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34440751_34441377_34441509_34442793_34442927_34443170
ENSMUSG00000058600.14_34440651_34443337_7	chr15	-	538	4	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	31	0	intron_retention	FALSE	non_canonical	0	0	junction_2	2413.95291310056	12467	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	392	False	NA	-20	True	AATAAA	-27	NA	34443337	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34440751_34441377_34441509_34442786_34442927_34443170
ENSMUSG00000058600.14_34440651_34443337_8	chr15	-	530	4	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	31	0	intron_retention	FALSE	canonical	0	0	junction_2	2413.95291310056	3466	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	392	False	NA	-20	True	AATAAA	-27	NA	34443337	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34440751_34441377_34441495_34442780_34442927_34443170
ENSMUSG00000058600.14_34440651_34443337_9	chr15	-	442	5	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2363.42405209053	2863	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	392	False	NA	-20	True	AATAAA	-27	NA	34443337	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34440751_34441377_34441509_34442793_34442927_34443170_34443224_34443312
ENSMUSG00000058600.14_34440651_34443405_1	chr15	-	490	5	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2212.93905248202	3804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	324	False	NA	-20	True	AATAAA	-27	NA	34443405	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34440732_34441373_34441509_34442780_34442927_34443170_34443224_34443330
ENSMUSG00000058600.14_34440651_34443405_2	chr15	-	448	5	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_2	2088.83753556853	889	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	324	False	NA	-20	True	AATAAA	-27	NA	34443405	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34440751_34441377_34441452_34442780_34442927_34443170_34443224_34443330
ENSMUSG00000058600.14_34440651_34443405_3	chr15	-	492	5	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2092.87445872895	10120	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	324	False	NA	-20	True	AATAAA	-27	NA	34443405	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34440751_34441377_34441509_34442793_34442927_34443170_34443224_34443330
ENSMUSG00000058600.14_34440651_34443405_4	chr15	-	490	5	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1958.71327342723	3664	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	324	False	NA	-20	True	AATAAA	-27	NA	34443405	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34440751_34441377_34441509_34442780_34442912_34443170_34443224_34443330
ENSMUSG00000058600.14_34440651_34443405_5	chr15	-	500	5	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2212.93905248202	19457	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	324	False	NA	-20	True	AATAAA	-27	NA	34443405	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34440751_34441382_34441509_34442780_34442927_34443170_34443224_34443330
ENSMUSG00000058600.14_34440651_34443405_6	chr15	-	491	5	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2092.87445872895	8623	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	324	False	NA	-20	True	AATAAA	-27	NA	34443405	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34440751_34441377_34441495_34442780_34442927_34443170_34443224_34443330
ENSMUSG00000058600.14_34440651_34443405_7	chr15	-	499	5	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_3	1957.05421169164	58357	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	324	False	NA	-20	True	AATAAA	-27	NA	34443405	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_34440751_34441377_34441509_34442780_34442921_34443170_34443224_34443330
ENSMUSG00000058625.7_82356486_82358106_1	chr18	+	416	2	Genic_Genomic	ENSMUSG00000058625.7	novel	1355	1	NA	NA	-101	165	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAAGAAAGCAACATTG	NA	False	NA	NA	False	AGTAAA	-27	NA	82356485	82358106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr18_+_82356716_82357920
ENSMUSG00000058625.7_82356486_82358106_2	chr18	+	417	2	Genic_Genomic	ENSMUSG00000058625.7	novel	1355	1	NA	NA	-101	165	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAAGAAAGCAACATTG	NA	False	NA	NA	False	AGTAAA	-27	NA	82356485	82358106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr18_+_82356717_82357920
ENSMUSG00000058626.17_45941130_45944037_1	chr17	-	924	8	ISM	ENSMUSG00000058626.17	ENSMUST00000120717.8	2591	22	26214	0	26186	0	3prime_fragment	FALSE	canonical	0	0	junction_6	2.24971653543195	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCACTTAATTCTTCA	NA	False	NA	NA	False	AATAAA	-14	NA	45944037	45941129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_45941538_45941651_45941711_45942713_45942828_45942934_45943014_45943306_45943376_45943624_45943690_45943800_45943859_45943965
ENSMUSG00000058638.15_12581963_12582428_1	chr7	+	168	2	ISM	ENSMUSG00000058638.15	ENSMUST00000168247.2	2499	7	12553	1424	11745	-1424	3prime_fragment	FALSE	canonical	3	304	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTCTACTGTCTTTGAA	NA	False	NA	NA	False	NA	NA	NA	12581962	12582428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_12582026_12582323
ENSMUSG00000058655.10_101982299_102003871_1	chr15	+	2018	15	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	0	237	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	228.172922699126	5245	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTTTCTAAACTTTTTTT	NA	False	NA	17	True	AATAAA	-17	NA	101982298	102003871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_101982399_101990418_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUSG00000058655.10_101982299_102003871_3	chr15	+	2021	15	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	0	237	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	232.161537709925	5279	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTTTCTAAACTTTTTTT	NA	False	NA	17	True	AATAAA	-17	NA	101982298	102003871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993118_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUSG00000058655.10_101982299_102005608_2	chr15	+	3763	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	91	0	0	0	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	8263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	49	True	AATAAA	-19	NA	101982298	102005608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUSG00000058655.10_101998482_102003871_1	chr15	+	770	7	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	4023	237	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	335.111258473295	881	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTTTCTAAACTTTTTTT	NA	False	NA	17	True	AATAAA	-17	NA	101998481	102003871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_101998530_101999840_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUSG00000058655.10_101998482_102003871_2	chr15	+	769	7	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	4023	237	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	330.901000636478	362	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTTTCTAAACTTTTTTT	NA	False	NA	17	True	AATAAA	-17	NA	101998481	102003871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_101998530_101999831_101999930_102001430_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUSG00000058706.6_72324309_72326962_1	chr6	+	1444	4	FSM	ENSMUSG00000058706.6	ENSMUST00000077783.5	4605	4	-8	3169	0	-638	multi-exon	FALSE	canonical	3	33	junction_1	6.54896090146283	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGAAGAAGATGA	8318	False	NA	NA	False	NA	NA	NA	72324308	72326962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_72324499_72324575_72324695_72325511_72325664_72325979
ENSMUSG00000058709.12_26858084_26865838_1	chr7	-	2085	6	FSM	ENSMUSG00000058709.12	ENSMUST00000108382.2	1756	6	0	-329	0	0	multi-exon	FALSE	canonical	3	45	junction_5	218.816452763498	771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTTGTATTCCTCTCT	NA	False	NA	-4	True	AATAAA	-19	NA	26865838	26858083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26865740
ENSMUSG00000058709.12_26858084_26866227_1	chr7	-	1743	6	NNC	ENSMUSG00000058709.12	novel	2107	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	232.127206505399	456	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACTTGTATTCCTCTCT	NA	False	NA	-4	True	AATAAA	-19	NA	26866227	26858083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864407_26865154_26866108
ENSMUSG00000058748.10_4663167_4679549_1	chr8	+	1682	4	FSM	ENSMUSG00000058748.10	ENSMUST00000202692.5	2364	4	0	682	0	169	multi-exon	FALSE	canonical	3	165	junction_1	17.1075032271418	820	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAATGTGGTAAAGTCTTT	NA	False	NA	5	True	NA	NA	NA	4663166	4679549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_4663279_4675839_4675967_4676163_4676225_4678167
ENSMUSG00000058755.4_4187730_4191027_1	chr11	+	1869	3	NNC	ENSMUSG00000058755.4	novel	773	2	NA	NA	1310	1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	20	114	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGTCAGTCTTTTATT	858	False	NA	6	True	TTTAAA	-19	NA	4187729	4191027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_4187820_4188405_4188543_4189385
ENSMUSG00000058756.14_98654285_98659832_1	chr11	+	1190	3	ISM	ENSMUSG00000058756.14	ENSMUST00000124072.2	1240	9	9873	-603	9873	0	3prime_fragment	FALSE	canonical	3	17	junction_2	16.5	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGTGTGCCTCCTCCAGG	7521	False	NA	29	True	NA	NA	NA	98654284	98659832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_98654614_98655103_98655232_98659099
ENSMUSG00000058793.15_132105161_132147305_1	chr2	+	1638	13	FSM	ENSMUSG00000058793.15	ENSMUST00000103181.11	8396	13	93	6665	0	57	multi-exon	FALSE	canonical	2	258	junction_5	60.9331942923286	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGTCATTTTTTTTTCT	5337	False	NA	12	True	AATGAA	-14	NA	132105160	132147305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_132105418_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072
ENSMUSG00000058793.15_132127859_132147305_1	chr2	+	1408	13	FSM	ENSMUSG00000058793.15	ENSMUST00000089461.11	8073	13	0	6665	0	57	multi-exon	FALSE	canonical	2	123	junction_1	89.520132744912	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGTCATTTTTTTTTCT	NA	False	NA	12	True	AATGAA	-14	NA	132127858	132147305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_132127886_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072
ENSMUSG00000058799.17_111309084_111332745_1	chr10	+	1321	15	NNC	ENSMUSG00000058799.17	novel	1486	16	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	663.243529626816	735	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	23	True	AATAAA	-25	NA	111309083	111332745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111326260_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
ENSMUSG00000058799.17_111309103_111331007_1	chr10	+	613	7	NNC	ENSMUSG00000058799.17	novel	1512	14	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	989.25623014914	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGTTGGGAAATTTTTC	NA	False	NA	19	True	AATAAA	-20	NA	111309102	111331007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111330003_111330155_111330655_111330686_111330911
ENSMUSG00000058799.17_111309103_111331007_2	chr10	+	1315	14	FSM	ENSMUSG00000058799.17	ENSMUST00000219961.2	1512	14	15	182	0	3	multi-exon	FALSE	canonical	3	75	junction_13	616.19895158057	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGTTGGGAAATTTTTC	NA	False	NA	19	True	AATAAA	-20	NA	111309102	111331007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111330911
ENSMUSG00000058799.17_111309103_111332745_1	chr10	+	765	9	NNC	ENSMUSG00000058799.17	novel	1486	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	756.511803857018	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	23	True	AATAAA	-25	NA	111309102	111332745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111330003_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
ENSMUSG00000058799.17_111309103_111332745_2	chr10	+	1293	14	NNC	ENSMUSG00000058799.17	novel	1486	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	802.511811190709	352	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	23	True	AATAAA	-25	NA	111309102	111332745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111326260_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329315_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
ENSMUSG00000058799.17_111309103_111332745_3	chr10	+	2123	14	NNC	ENSMUSG00000058799.17	novel	1350	15	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_10	580.414726241392	1385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	23	True	AATAAA	-25	NA	111309102	111332745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111330003_111330155_111330655_111330686_111331185_111331237_111331900
ENSMUSG00000058799.17_111309103_111332745_4	chr10	+	1413	8	NNC	ENSMUSG00000058799.17	novel	1350	15	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_4	723.765493648266	771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	23	True	AATAAA	-25	NA	111309102	111332745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111330003_111330155_111330655_111330686_111331185_111331237_111331900
ENSMUSG00000058799.17_111309103_111332745_5	chr10	+	1302	15	NNC	ENSMUSG00000058799.17	novel	1486	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	663.243529626816	705	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	23	True	AATAAA	-25	NA	111309102	111332745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111326260_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
ENSMUSG00000058799.17_111309103_111332745_6	chr10	+	1475	15	NNC	ENSMUSG00000058799.17	novel	1486	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	635.455597446848	1556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	23	True	AATAAA	-25	NA	111309102	111332745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111330003_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
ENSMUSG00000058799.17_111329226_111331007_1	chr10	+	347	5	ISM	ENSMUSG00000058799.17	ENSMUST00000219961.2	1512	14	20138	182	-539	3	3prime_fragment	FALSE	canonical	3	75	junction_4	781.113748118672	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGTTGGGAAATTTTTC	NA	False	NA	19	True	AATAAA	-20	NA	111329225	111331007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111330911
ENSMUSG00000058812.3_163466582_163487045_1	chr2	+	2279	10	Genic_Genomic	ENSMUSG00000058812.3	novel	951	1	NA	NA	-20188	-675	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2323	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAACAGGGCCCGCCCTTC	NA	False	NA	NA	False	NA	NA	NA	163466581	163487045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_+_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474033_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
ENSMUSG00000058833.12_70956945_70958758_1	chr8	-	645	3	FSM	ENSMUSG00000058833.12	ENSMUST00000138196.2	542	3	0	-103	0	0	multi-exon	FALSE	canonical	3	841	junction_1	23	1357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70958758	70956944	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70957160_70957633_70957711_70958405
ENSMUSG00000058833.12_70956945_70959076_1	chr8	-	555	3	NIC	ENSMUSG00000058833.12	novel	632	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	61.5	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70959076	70956944	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_70957160_70958405_70958611_70958941
ENSMUSG00000058833.12_70956945_70959389_1	chr8	-	581	4	NIC	ENSMUSG00000058833.12	novel	671	5	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	348.934887272046	805	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70959389	70956944	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_70957160_70958405_70958611_70959146_70959230_70959311
ENSMUSG00000058833.12_70957048_70959389_1	chr8	-	555	5	FSM	ENSMUSG00000058833.12	ENSMUST00000075175.12	671	5	13	103	-2	0	multi-exon	FALSE	canonical	3	754	junction_4	53.0518614188041	1111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGGCGTCGAGCCCAG	NA	False	NA	-111	True	NA	NA	NA	70959389	70957047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70959146_70959230_70959311
ENSMUSG00000058835.15_22785631_22830278_1	chr2	-	1610	12	Fusion	ENSMUSG00000069136.5_ENSMUSG00000058835.15	novel	3360	10	NA	NA	6944	-298	intron_retention	FALSE	non_canonical	0	0	junction_1	0	525	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTCGCGGCGGGCCGTAG	NA	False	NA	NA	False	NA	NA	NA	22830278	22785630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_-_22785775_22789930_22789996_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22819755_22819870_22825570_22825652_22829834
ENSMUSG00000058835.15_22785631_22830278_2	chr2	-	1545	11	Fusion	ENSMUSG00000069136.5_ENSMUSG00000058835.15	novel	3360	10	NA	NA	6944	-298	intron_retention	FALSE	non_canonical	0	0	junction_1	0	915	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTCGCGGCGGGCCGTAG	NA	False	NA	NA	False	NA	NA	NA	22830278	22785630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_-_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22819755_22819870_22825570_22825652_22829834
ENSMUSG00000058835.15_22830376_22930199_1	chr2	-	3061	10	FSM	ENSMUSG00000058835.15	ENSMUST00000126112.8	3360	10	8	291	0	0	multi-exon	FALSE	canonical	3	161	junction_4	54.5400521080666	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGATATTGTTAAAGTAT	NA	False	NA	-2	True	AATAAA	-21	NA	22930199	22830375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
ENSMUSG00000058835.15_22831245_22930199_1	chr2	-	2192	10	FSM	ENSMUSG00000058835.15	ENSMUST00000126112.8	3360	10	8	1160	0	0	multi-exon	FALSE	canonical	3	161	junction_4	54.5400521080666	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGATTTTGGCCTCTCCT	NA	False	NA	-5	True	TATAAA	-31	NA	22930199	22831244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
ENSMUSG00000058900.6_67321246_67331266_1	chr13	+	1804	4	FSM	ENSMUSG00000058900.6	ENSMUST00000225334.2	397	4	-17	-1390	0	-842	multi-exon	FALSE	canonical	3	9	junction_1	8.28653526310404	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAGCTTCTAGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	67321245	67331266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_67321373_67324511_67324639_67325128_67325225_67329812
ENSMUSG00000058966.14_126394406_126398354_1	chr7	+	1434	9	NNC	ENSMUSG00000058966.14	novel	1915	9	NA	NA	-2434	-18047	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	13774	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACGGGAGGCGGGGCCCC	NA	False	NA	NA	False	NA	NA	NA	126394405	126398354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396944_126398216
ENSMUSG00000058966.14_126394406_126398354_2	chr7	+	1439	9	NIC	ENSMUSG00000058966.14	novel	1915	9	NA	NA	-2434	-18047	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	28602	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACGGGAGGCGGGGCCCC	NA	False	NA	NA	False	NA	NA	NA	126394405	126398354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
ENSMUSG00000058966.14_126394406_126398354_3	chr7	+	1444	9	NNC	ENSMUSG00000058966.14	novel	1915	9	NA	NA	-2434	-18047	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	22413	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACGGGAGGCGGGGCCCC	NA	False	NA	NA	False	NA	NA	NA	126394405	126398354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396810_126396949_126398216
ENSMUSG00000058966.14_126394406_126399218_1	chr7	+	1346	9	NIC	ENSMUSG00000058966.14	novel	1915	9	NA	NA	-2434	-17183	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2761	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCGGCAGTCCAGGGCT	NA	False	NA	NA	False	NA	NA	NA	126394405	126399218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126399173
ENSMUSG00000059005.14_75489624_75496183_1	chr2	+	1306	9	NNC	ENSMUSG00000059005.14	novel	1734	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	39	junction_6	3844.61544728468	1698	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGAGTTAACACGTGAA	7494	False	NA	NA	False	NA	NA	NA	75489623	75496183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493077_75495451_75495495_75495577_75495646_75495741
ENSMUSG00000059005.14_75489624_75496465_1	chr2	+	1917	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111964.8	1654	11	19	-282	0	0	multi-exon	FALSE	canonical	3	3912	junction_1	2045.95805431099	12659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGGTTTTTGTGCAT	7494	False	NA	NA	False	AAAAAG	-13	NA	75489623	75496465	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
ENSMUSG00000059005.14_75489624_75496849_1	chr2	+	2301	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111964.8	1654	11	19	-666	0	384	multi-exon	FALSE	canonical	3	3912	junction_1	2045.95805431099	13047	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGCTGGCATGCTTTC	7494	False	NA	20	True	AATAAA	-20	NA	75489623	75496849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
ENSMUSG00000059005.14_75493203_75496183_1	chr2	+	940	4	ISM	ENSMUSG00000059005.14	ENSMUST00000141974.2	754	6	370	-384	370	0	3prime_fragment	FALSE	canonical	3	9771	junction_2	459.655184773205	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGAGTTAACACGTGAA	NA	False	NA	NA	False	NA	NA	NA	75493202	75496183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_75493270_75493914_75494059_75495371_75495495_75495577
ENSMUSG00000059119.10_143067316_143102829_3	chr7	-	2244	15	NNC	ENSMUSG00000059119.10	novel	2285	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	300.674581701933	2481	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGGTTTTTTTGTTGTTT	NA	False	NA	-1	True	ATTAAA	-20	NA	143102829	143067315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089470_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
ENSMUSG00000059182.9_51836146_51989512_1	chr6	-	1520	12	NIC	ENSMUSG00000059182.9	novel	3382	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	153.419696603093	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGACTTAGCCTGGTA	845	False	NA	-7	True	AATAAA	-18	NA	51989512	51836145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_51836551_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980736_51989314
ENSMUSG00000059182.9_51836146_51989512_2	chr6	-	1616	13	NNC	ENSMUSG00000059182.9	novel	3382	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	147.416336913142	2169	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGACTTAGCCTGGTA	845	False	NA	-7	True	AATAAA	-18	NA	51989512	51836145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_51836551_51836978_51837080_51851454_51851568_51856750_51856824_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980736_51989314
ENSMUSG00000059182.9_51836146_51989512_3	chr6	-	1618	12	NNC	ENSMUSG00000059182.9	novel	3382	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	152.322515605312	2141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGACTTAGCCTGGTA	845	False	NA	-7	True	AATAAA	-18	NA	51989512	51836145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_51836551_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973128_51980629_51980736_51989314
ENSMUSG00000059183.13_65343064_65348007_1	chr9	+	939	4	ISM	ENSMUSG00000059183.13	ENSMUST00000132966.8	2563	8	-6	11692	0	-6552	5prime_fragment	FALSE	canonical	3	143	junction_2	18.6607133363712	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAGAGATCAAGACTGGA	NA	False	NA	NA	False	NA	NA	NA	65343063	65348007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627
ENSMUSG00000059183.13_65343064_65348246_1	chr9	+	1178	4	ISM	ENSMUSG00000059183.13	ENSMUST00000132966.8	2563	8	-6	11453	0	-6313	5prime_fragment	FALSE	canonical	3	143	junction_2	18.6607133363712	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGATCTTCAGTGGTCC	NA	False	NA	NA	False	AATAAA	-16	NA	65343063	65348246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627
ENSMUSG00000059183.13_65343064_65359699_1	chr9	+	1405	9	FSM	ENSMUSG00000059183.13	ENSMUST00000074792.7	2042	9	0	637	0	0	multi-exon	FALSE	canonical	3	114	junction_5	22.1472345903501	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTTGTATCCTTTGAAG	NA	False	NA	27	True	AATAAA	-28	NA	65343063	65359699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627_65347731_65348894_65348971_65351160_65351253_65354505_65354585_65355977_65356061_65359286
ENSMUSG00000059208.16_33865207_33904366_1	chr17	-	2347	16	NNC	ENSMUSG00000059208.16	novel	2370	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	491.668786436108	8010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGCCTTTTTTGTTTTTG	5767	False	NA	-2	True	AATAAA	-19	NA	33904366	33865206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33889048_33889108_33896247_33896415_33904240
ENSMUSG00000059208.16_33865207_33904366_2	chr17	-	2464	15	NNC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_12	499.910221531663	6312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGCCTTTTTTGTTTTTG	5767	False	NA	-2	True	AATAAA	-19	NA	33904366	33865206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889048_33889108_33896247_33896415_33904240
ENSMUSG00000059248.14_117222546_117251476_1	chr11	+	1266	10	FSM	ENSMUSG00000059248.14	ENSMUST00000100193.8	2924	10	0	1658	0	-216	multi-exon	FALSE	canonical	3	18	junction_1	196.831569283656	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTCCATCCATCTCTT	NA	False	NA	NA	False	NA	NA	NA	117222545	117251476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_117222680_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ENSMUSG00000059248.14_117223254_117251476_1	chr11	+	1175	10	FSM	ENSMUSG00000059248.14	ENSMUST00000106349.2	2932	10	83	1674	0	-216	multi-exon	FALSE	canonical	3	306	junction_1	107.436803129406	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTCCATCCATCTCTT	NA	False	NA	NA	False	NA	NA	NA	117223253	117251476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_117223297_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ENSMUSG00000059263.10_111701681_111710591_1	chr7	+	2031	7	ISM	ENSMUSG00000059263.10	ENSMUST00000106653.4	5540	28	78970	0	11768	0	3prime_fragment	FALSE	canonical	3	328	junction_6	26.9485105752103	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTTATCTTAGTCATT	NA	False	NA	4	True	AATAAA	-16	NA	111701680	111710591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_111701727_111703156_111703273_111703556_111703676_111705985_111706117_111707642_111707691_111707780_111707912_111709151
ENSMUSG00000059277.13_142606531_142621671_2	chr7	-	1468	8	NNC	ENSMUSG00000059277.13	novel	2482	5	NA	NA	-14248	-19510	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3681	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACCGGGCGCGCGCGCCT	NA	False	NA	NA	False	NA	NA	NA	142621671	142606530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_142606804_142616239_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
ENSMUSG00000059278.10_69286313_69287506_1	chr11	+	540	3	NIC	ENSMUSG00000059278.10	novel	671	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	615.5	2662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286312	69287506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_69286508_69287002_69287187_69287345
ENSMUSG00000059278.10_69286640_69287506_1	chr11	+	504	3	FSM	ENSMUSG00000059278.10	ENSMUST00000144531.2	671	3	167	0	0	0	multi-exon	FALSE	canonical	3	948	junction_1	166	9641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286639	69287506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69286799_69287002_69287187_69287345
ENSMUSG00000059288.15_35922440_36058045_1	chr13	+	3260	8	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2856	-1	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_1	86.1488981534948	181	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGGAGTGTTTCTCTGC	NA	False	NA	17	True	AATAAA	-18	NA	35922439	36058045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_35922622_35974083_35974159_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
ENSMUSG00000059291.16_135777258_135780307_1	chr4	-	598	6	NIC	ENSMUSG00000059291.16	novel	833	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_5	4990.53135447519	157375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTACAGTTGTGTGTTTGT	NA	False	NA	-4	True	AATAAA	-40	NA	135780307	135777257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780280
ENSMUSG00000059291.16_135777258_135780704_1	chr4	-	606	6	NNC	ENSMUSG00000059291.16	novel	833	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4058.61119103567	191930	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTACAGTTGTGTGTTTGT	NA	False	NA	-4	True	AATAAA	-40	NA	135780704	135777257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_135777317_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658
ENSMUSG00000059291.16_135777258_135780704_2	chr4	-	580	6	NNC	ENSMUSG00000059291.16	novel	833	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4570.86129301689	50060	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTACAGTTGTGTGTTTGT	NA	False	NA	-4	True	AATAAA	-40	NA	135780704	135777257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_135777328_135777590_135777702_135778481_135778577_135778924_135779032_135779877_135780029_135780658
ENSMUSG00000059291.16_135777258_135780704_3	chr4	-	810	6	NNC	ENSMUSG00000059291.16	novel	833	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	5002.5285446462	159776	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTACAGTTGTGTGTTTGT	NA	False	NA	-4	True	AATAAA	-40	NA	135780704	135777257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780465
ENSMUSG00000059291.16_135777258_135780704_4	chr4	-	601	6	NNC	ENSMUSG00000059291.16	novel	833	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4421.88052303542	205139	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTACAGTTGTGTGTTTGT	NA	False	NA	-4	True	AATAAA	-40	NA	135780704	135777257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779016_135779877_135780029_135780658
ENSMUSG00000059305.13_16686267_16688736_1	chr16	-	761	2	FSM	ENSMUSG00000059305.13	ENSMUST00000232670.2	415	2	-29	-317	-29	0	multi-exon	FALSE	canonical	3	7	junction_1	0	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTGGTCTGGCTGGTTTG	NA	False	NA	-1	True	ATTAAA	-14	NA	16688736	16686266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_16686843_16688551
ENSMUSG00000059305.13_16688631_16710854_1	chr16	-	2945	19	NIC	ENSMUSG00000059305.13	novel	406	3	NA	NA	-22147	-1848	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGCTCTGTCCGTCTGT	7276	False	NA	NA	False	NA	NA	NA	16710854	16688630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_16688694_16692935_16693020_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ENSMUSG00000059325.15_77235415_77243124_1	chr5	-	533	3	FSM	ENSMUSG00000059325.15	ENSMUST00000113453.9	1113	3	0	580	0	-580	multi-exon	FALSE	canonical	3	24	junction_1	1.5	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAAAATAACAGGGAGCTA	3143	False	NA	NA	False	ACTAAA	-11	NA	77243124	77235414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_77235664_77242712_77242870_77242997
ENSMUSG00000059355.14_85807602_85808961_1	chr8	+	682	4	FSM	ENSMUSG00000059355.14	ENSMUST00000079764.14	922	4	233	7	0	0	multi-exon	FALSE	canonical	3	586	junction_1	13.7679176187089	5682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCACTGTTGCTTCTCT	NA	False	NA	29	True	TATAAA	-18	NA	85807601	85808961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85807693_85807801_85807908_85808405_85808504_85808574
ENSMUSG00000059355.14_85807602_85808961_2	chr8	+	676	4	NNC	ENSMUSG00000059355.14	novel	922	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	276.247875808827	3202	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCACTGTTGCTTCTCT	NA	False	NA	29	True	TATAAA	-18	NA	85807601	85808961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_85807693_85807801_85807908_85808411_85808504_85808574
ENSMUSG00000059363.11_24239120_24257969_1	chr19	-	811	5	FSM	ENSMUSG00000059363.11	ENSMUST00000081333.11	1114	5	0	303	0	106	multi-exon	FALSE	canonical	3	359	junction_4	29.2018835008977	1326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTCCCCGGACCTGGCT	NA	False	NA	-7	True	AAAAAG	-15	NA	24257969	24239119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_24239418_24244665_24244764_24249710_24249832_24254544_24254640_24257770
ENSMUSG00000059363.11_24239226_24257969_1	chr19	-	705	5	FSM	ENSMUSG00000059363.11	ENSMUST00000081333.11	1114	5	0	409	0	0	multi-exon	FALSE	canonical	3	359	junction_4	29.2018835008977	755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCCCAGCCTCCTCCTGT	NA	False	NA	-14	True	ATTAAA	-15	NA	24257969	24239225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_24239418_24244665_24244764_24249710_24249832_24254544_24254640_24257770
ENSMUSG00000059409.10_46992050_46994028_1	chr17	-	824	4	NNC	ENSMUSG00000059409.10	novel	1587	4	NA	NA	2224	1867	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1834	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGGGCAGGACATGCTGG	NA	False	NA	NA	False	NA	NA	NA	46994028	46992049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_46992089_46992542_46992824_46992934_46993038_46993627
ENSMUSG00000059409.10_46992050_46994028_2	chr17	-	812	4	NNC	ENSMUSG00000059409.10	novel	1587	4	NA	NA	2224	1867	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGGGCAGGACATGCTGG	NA	False	NA	NA	False	NA	NA	NA	46994028	46992049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_46992089_46992542_46992829_46992934_46993038_46993644
ENSMUSG00000059409.10_46993917_46995255_1	chr17	-	1205	2	ISM	ENSMUSG00000059409.10	ENSMUST00000002839.9	2926	15	20673	0	997	0	3prime_fragment	FALSE	canonical	3	452	junction_1	0	1902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGAGTCGCCTTGGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	46995255	46993916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_46995053_46995186
ENSMUSG00000059409.10_46998258_47015928_1	chr17	-	670	5	ISM	ENSMUSG00000059409.10	ENSMUST00000002839.9	2926	15	0	4341	0	-1024	5prime_fragment	FALSE	canonical	3	464	junction_1	7.54983443527075	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTCATCGAATCCCACAG	1109	False	NA	NA	False	NA	NA	NA	47015928	46998257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_46998287_46998371_46998572_46998762_46998956_47010994_47011073_47015758
ENSMUSG00000059412.8_45314512_45321576_1	chr9	+	536	5	NNC	ENSMUSG00000059412.8	novel	632	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	92.9821891546978	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGAGTGCTTATCATTC	NA	False	NA	34	True	AATGAA	-20	NA	45314511	45321576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_45314618_45319597_45319673_45320810_45320848_45321000_45321032_45321289
ENSMUSG00000059412.8_45314512_45321576_3	chr9	+	690	6	NNC	ENSMUSG00000059412.8	novel	632	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	81.8618348194078	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGAGTGCTTATCATTC	NA	False	NA	34	True	AATGAA	-20	NA	45314511	45321576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_45314599_45319269_45319443_45319597_45319673_45320810_45320848_45321000_45321032_45321289
ENSMUSG00000059412.8_45319230_45321576_1	chr9	+	643	5	ISM	ENSMUSG00000059412.8	ENSMUST00000217549.2	258	6	760	-265	760	0	3prime_fragment	FALSE	canonical	3	206	junction_4	7.3143694191639	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGAGTGCTTATCATTC	150	False	NA	34	True	AATGAA	-20	NA	45319229	45321576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_45319443_45319597_45319673_45320810_45320848_45321000_45321032_45321289
ENSMUSG00000059423.14_147911204_147932880_1	chr4	-	534	4	FSM	ENSMUSG00000059423.14	ENSMUST00000105718.8	4238	4	-57	3761	-57	0	multi-exon	FALSE	canonical	3	42	junction_2	6.37704215656966	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATGTAATCAGTGTGGG	3884	False	NA	NA	False	NA	NA	NA	147932880	147911203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_147911404_147912866_147912928_147913126_147913254_147932734
ENSMUSG00000059423.14_147911335_147932880_1	chr4	-	403	4	FSM	ENSMUSG00000059423.14	ENSMUST00000105718.8	4238	4	-57	3892	-57	-131	multi-exon	FALSE	canonical	3	42	junction_2	6.37704215656966	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTATCCTCAGTGGCATG	3884	False	NA	NA	False	NA	NA	NA	147932880	147911334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_147911404_147912866_147912928_147913126_147913254_147932734
ENSMUSG00000059436.14_76984043_77008992_1	chr12	-	2049	5	NNC	ENSMUSG00000059436.14	novel	1942	5	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	26.5988721565408	2370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGTAGTGTCTTCTTAAC	NA	False	NA	0	True	AATAAA	-20	NA	77008992	76984042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_76985530_76986187_76986289_76986740_76986865_76999942_77000051_77008763
ENSMUSG00000059436.14_76984449_77008992_1	chr12	-	1542	4	FSM	ENSMUSG00000059436.14	ENSMUST00000082136.7	1926	4	-17	401	-17	-401	multi-exon	FALSE	canonical	3	49	junction_1	8.28653526310404	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTCTGTGTGTATTTC	NA	False	NA	0	True	CATAAA	-19	NA	77008992	76984448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_76985530_76986740_76986865_76999942_77000051_77008763
ENSMUSG00000059447.14_30360246_30389583_1	chr5	+	2019	16	NNC	ENSMUSG00000059447.14	novel	2033	16	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	146.341153929212	1571	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGTTCGTAGTCTCGTT	NA	False	NA	2	True	AATAAA	-17	NA	30360245	30389583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_30360338_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385318_30385388_30385918_30386084_30389050
ENSMUSG00000059486.12_56758881_56774506_1	chr6	-	616	3	ISM	ENSMUSG00000059486.12	ENSMUST00000114323.8	3816	4	215	4372	215	-4371	5prime_fragment	FALSE	canonical	3	176	junction_2	0.5	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGCAGATGATAATAGCT	9918	False	NA	NA	False	NA	NA	NA	56774506	56758880	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_56758952_56766203_56766686_56774443
ENSMUSG00000059495.15_42937300_43016576_1	chr9	-	538	5	NIC	ENSMUSG00000059495.15	novel	10752	41	NA	NA	205	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	5.11737237261468	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTCACCTTTGTTCTTG	NA	False	NA	NA	False	AATAAA	-13	NA	43016576	42937299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_42937526_42938492_42938592_42953886_42953973_42955559_42955584_43016473
ENSMUSG00000059498.14_170878743_170886162_1	chr1	-	1253	4	NNC	ENSMUSG00000059498.14	novel	1298	3	NA	NA	-539	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	74.4983221287567	931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATCTCCTTTTGGTGAC	NA	False	NA	-7	True	AATAAA	-24	NA	170886162	170878742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_170879422_170881507_170881763_170885259_170885515_170886098
ENSMUSG00000059498.14_170878743_170886191_1	chr1	-	1226	4	ISM	ENSMUSG00000059498.14	ENSMUST00000169017.8	1324	5	781	-21	-568	0	3prime_fragment	FALSE	canonical	2	3	junction_3	73.5587444760233	828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATCTCCTTTTGGTGAC	NA	False	NA	-7	True	AATAAA	-24	NA	170886191	170878742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_170879422_170881507_170881763_170885259_170885515_170886154
ENSMUSG00000059518.15_137011044_137015704_1	chr5	-	684	5	NNC	ENSMUSG00000059518.15	novel	740	5	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	141.14620079903	1281	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTCATTCTGGGGTAT	NA	False	NA	6	True	AATAAA	-22	NA	137015704	137011043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_137011272_137011371_137011542_137011721_137011797_137013732_137013904_137015664
ENSMUSG00000059518.15_137011044_137015704_2	chr5	-	678	5	NNC	ENSMUSG00000059518.15	novel	740	5	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	141.14620079903	1105	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTCATTCTGGGGTAT	NA	False	NA	6	True	AATAAA	-22	NA	137015704	137011043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_137011272_137011371_137011542_137011721_137011791_137013732_137013904_137015664
ENSMUSG00000059518.15_137011044_137016397_1	chr5	-	804	4	FSM	ENSMUSG00000059518.15	ENSMUST00000111090.9	698	4	0	-106	0	0	multi-exon	FALSE	canonical	0	0	junction_3	144.270579121316	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTCATTCTGGGGTAT	NA	False	NA	6	True	AATAAA	-22	NA	137016397	137011043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_137011542_137011721_137011802_137013732_137013904_137016342
ENSMUSG00000059518.15_137011044_137016397_2	chr5	-	699	5	NNC	ENSMUSG00000059518.15	novel	1208	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	156.269598770842	881	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTCATTCTGGGGTAT	NA	False	NA	6	True	AATAAA	-22	NA	137016397	137011043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_137011272_137011371_137011542_137011721_137011797_137013732_137013904_137016342
ENSMUSG00000059518.15_137011044_137016397_3	chr5	-	693	5	NNC	ENSMUSG00000059518.15	novel	1208	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	156.269598770842	551	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTCATTCTGGGGTAT	NA	False	NA	6	True	AATAAA	-22	NA	137016397	137011043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_137011272_137011371_137011542_137011721_137011791_137013732_137013904_137016342
ENSMUSG00000059552.14_69471231_69479343_1	chr11	+	633	4	NNC	ENSMUSG00000059552.14	novel	1822	11	NA	NA	0	-1304	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1069.16301636166	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCATGAGCGCTGCTCC	NA	False	NA	NA	False	NA	NA	NA	69471230	69479343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_69471342_69477716_69477800_69478173_69478459_69479189
ENSMUSG00000059552.14_69471231_69482699_1	chr11	+	1708	10	NNC	ENSMUSG00000059552.14	novel	1772	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	672.180714971983	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	16	True	AATAAA	-17	NA	69471230	69482699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_69471342_69477716_69477804_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
ENSMUSG00000059552.14_69471231_69482699_3	chr11	+	1725	10	NNC	ENSMUSG00000059552.14	novel	1772	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	672.180714971983	1896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	16	True	AATAAA	-17	NA	69471230	69482699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_69471342_69477716_69477800_69478176_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
ENSMUSG00000059552.14_69471231_69482699_5	chr11	+	1720	11	NNC	ENSMUSG00000059552.14	novel	1772	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	49	junction_5	624.327518214599	3056	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	16	True	AATAAA	-17	NA	69471230	69482699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479368_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
ENSMUSG00000059552.14_69471231_69482699_6	chr11	+	1800	10	NIC	ENSMUSG00000059552.14	novel	1822	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	821.763280324017	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	16	True	AATAAA	-17	NA	69471230	69482699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_69471342_69477716_69477800_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
ENSMUSG00000059552.14_69471231_69482699_7	chr11	+	1716	10	NNC	ENSMUSG00000059552.14	novel	1772	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	672.180714971983	782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	16	True	AATAAA	-17	NA	69471230	69482699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_69471342_69477716_69477800_69478185_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
ENSMUSG00000059554.13_18089430_18110729_1	chr10	-	1164	5	NNC	ENSMUSG00000059554.13	novel	1190	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	30.5563004959697	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTCATCTCTGTTTTCTGT	NA	False	NA	-6	True	AATAAA	-15	NA	18110729	18089429	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_18089927_18095217_18095391_18100644_18100809_18106166_18106367_18110599
ENSMUSG00000059554.13_18093913_18110729_1	chr10	-	877	5	FSM	ENSMUSG00000059554.13	ENSMUST00000052648.9	2255	5	-3	1381	-3	-1381	multi-exon	FALSE	canonical	3	18	junction_1	22.796655456448	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAGGGAGCTAGGGAGAT	NA	False	NA	NA	False	NA	NA	NA	18110729	18093912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_18094141_18095235_18095391_18100644_18100809_18106166_18106367_18110599
ENSMUSG00000059586.11_59246096_59327554_1	chr15	+	780	4	ISM	ENSMUSG00000059586.11	ENSMUST00000168722.3	2679	5	0	83959	0	-83959	5prime_fragment	FALSE	canonical	3	929	junction_1	3.85861230093008	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACAATGGTAATTCTTTCA	NA	False	NA	NA	False	AATAAA	-23	NA	59246095	59327554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161
ENSMUSG00000059586.11_59246096_59473533_1	chr15	+	1087	7	NNC	ENSMUSG00000059586.11	novel	1054	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	332.141870624922	5226	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCATGGTCCTGTCTG	NA	False	NA	16	True	AATAAA	-17	NA	59246095	59473533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_59246205_59250716_59250888_59287873_59287981_59327168_59327316_59463545_59463647_59463986_59464094_59473188
ENSMUSG00000059586.11_59246096_59473533_2	chr15	+	923	6	NIC	ENSMUSG00000059586.11	novel	1054	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_1	346.521225901098	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCATGGTCCTGTCTG	NA	False	NA	16	True	AATAAA	-17	NA	59246095	59473533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_59246205_59287873_59287981_59327161_59327316_59463545_59463647_59463986_59464094_59473188
ENSMUSG00000059669.9_24548610_24555136_1	chr12	+	329	3	ISM	ENSMUSG00000059669.9	ENSMUST00000222710.2	521	4	0	4611	0	-4611	5prime_fragment	FALSE	canonical	3	214	junction_1	44.5	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAGTTCTTAAAGTCAAG	NA	False	NA	NA	False	AATAAA	-23	NA	24548609	24555136	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_24548649_24550434_24550534_24554945
ENSMUSG00000059669.9_24548610_24559601_1	chr12	+	375	4	FSM	ENSMUSG00000059669.9	ENSMUST00000222710.2	521	4	0	146	0	-146	multi-exon	FALSE	canonical	3	45	junction_3	107.002596022506	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAAAGGCGTTTTTTTCGT	NA	False	NA	NA	False	ACTAAA	-22	NA	24548609	24559601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559452
ENSMUSG00000059669.9_24548610_24608538_1	chr12	+	1957	15	FSM	ENSMUSG00000059669.9	ENSMUST00000075954.9	2209	15	252	0	0	0	multi-exon	FALSE	canonical	3	207	junction_4	28.2355254592363	892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTGGAAACTTGCAT	NA	False	NA	12	True	ATTAAA	-21	NA	24548609	24608538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
ENSMUSG00000059689.16_117818229_117822917_1	chr6	+	1202	3	FSM	ENSMUSG00000059689.16	ENSMUST00000136889.8	659	3	0	-543	0	0	multi-exon	FALSE	canonical	3	25	junction_1	15.5	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGTATTTTTCATAATTT	NA	False	NA	11	True	AATAAA	-18	NA	117818228	117822917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_117818359_117820213_117820354_117821985
ENSMUSG00000059708.13_35876093_35909079_1	chrX	-	1139	6	FSM	ENSMUSG00000059708.13	ENSMUST00000133980.2	1370	6	-330	561	-31	-561	multi-exon	FALSE	canonical	3	34	junction_4	11.6687617166519	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGGAAGAAAAAAACTAAGGC	NA	False	NA	NA	False	NA	NA	NA	35909079	35876092	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_35876318_35877907_35877977_35878338_35878574_35882255_35882387_35900125_35900228_35908702
ENSMUSG00000059708.13_35882288_35909048_1	chrX	-	1316	4	ISM	ENSMUSG00000059708.13	ENSMUST00000051906.13	6003	7	0	10321	0	-6756	5prime_fragment	FALSE	canonical	3	11	junction_1	14.6590889515307	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAGAAGAGAGAAGAGGA	NA	False	NA	-32	True	NA	NA	NA	35909048	35882287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_35882387_35887220_35887990_35900125_35900228_35908702
ENSMUSG00000059708.13_35882288_35909048_3	chrX	-	547	3	ISM	ENSMUSG00000059708.13	ENSMUST00000133980.2	1370	6	-299	6756	0	-6756	5prime_fragment	FALSE	canonical	3	34	junction_1	5.5	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAGAAGAGAGAAGAGGA	NA	False	NA	-32	True	NA	NA	NA	35909048	35882287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_35882387_35900125_35900228_35908702
ENSMUSG00000059713.13_135139619_135161134_1	chr4	-	970	5	NIC	ENSMUSG00000059713.13	novel	5111	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	31.244999599936	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATTGAGCAGTCTCTTC	NA	False	NA	-4	True	AATAAA	-22	NA	135161134	135139618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_135139802_135145690_135145863_135147556_135147731_135152524_135152754_135160922
ENSMUSG00000059714.14_36134274_36143683_1	chr17	+	1582	12	NIC	ENSMUSG00000059714.14	novel	1825	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	49.9444319318153	1174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATACTTCTTTCCTCACT	NA	False	NA	25	True	ATTAAA	-23	NA	36134273	36143683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_36134394_36134698_36134756_36135018_36135095_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36140917_36141010_36141057_36141545_36141684_36141834_36142000_36143398
ENSMUSG00000059734.8_3958870_3962750_1	chr19	-	748	7	NNC	ENSMUSG00000059734.8	novel	780	7	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	691.651987796046	13542	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTACCTGTTGTGTTGT	NA	False	NA	-8	True	CATAAA	-15	NA	3962750	3958869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961570_3961617_3961688_3961747_3962709
ENSMUSG00000059743.13_89000895_89009198_1	chr3	-	1162	10	NNC	ENSMUSG00000059743.13	novel	1237	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	739.393445106641	21528	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	-3	True	AATAAA	-14	NA	89009198	89000894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_89001151_89001537_89001673_89001758_89001837_89002173_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89009168
ENSMUSG00000059791.15_36172230_36176294_1	chr17	+	1249	3	FSM	ENSMUSG00000059791.15	ENSMUST00000172931.2	302	3	-148	-799	0	0	multi-exon	FALSE	canonical	1	2	junction_1	132.5	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTTGTCTGTCCATGAC	4609	False	NA	24	True	AATAAA	-18	NA	36172229	36176294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_36172410_36175003_36175181_36175402
ENSMUSG00000059791.15_36172378_36176294_1	chr17	+	1298	4	FSM	ENSMUSG00000059791.15	ENSMUST00000074259.15	1466	4	168	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	13.2748718344933	846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTTGTCTGTCCATGAC	4757	False	NA	24	True	AATAAA	-18	NA	36172377	36176294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_36172410_36174330_36174528_36175003_36175181_36175402
ENSMUSG00000059796.17_69557762_69563141_1	chr11	-	1767	11	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4165.61858071523	33126	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	False	NA	64	True	AATAAA	-19	NA	69563141	69557761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_69558444_69558520_69558596_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
ENSMUSG00000059796.17_69558048_69563141_1	chr11	-	1486	11	FSM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	2	286	0	0	multi-exon	FALSE	canonical	3	9657	junction_10	1402.57834362292	25971	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAACACTAATGCATTTC	NA	False	NA	61	True	NA	NA	NA	69563141	69558047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
ENSMUSG00000059796.17_69558048_69563141_2	chr11	-	1481	11	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4165.61858071523	12819	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAACACTAATGCATTTC	NA	False	NA	61	True	NA	NA	NA	69563141	69558047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_69558444_69558520_69558596_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
ENSMUSG00000059796.17_69558048_69563249_1	chr11	-	1594	11	FSM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	-106	286	0	0	multi-exon	FALSE	canonical	3	9657	junction_10	1402.57834362292	25957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAACACTAATGCATTTC	NA	False	NA	61	True	NA	NA	NA	69563249	69558047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
ENSMUSG00000059816.6_108224974_108240745_1	chr4	-	792	3	FSM	ENSMUSG00000059816.6	ENSMUST00000053157.7	593	3	-199	0	-199	0	multi-exon	FALSE	canonical	3	46	junction_2	6	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCATCATTACTTCTGGAA	NA	False	NA	-11	True	AATAAA	-6	NA	108240745	108224973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_108225239_108234543_108234684_108240358
ENSMUSG00000059824.13_45354512_45359452_1	chr7	+	1251	3	FSM	ENSMUSG00000059824.13	ENSMUST00000211513.2	1156	3	-181	86	0	0	multi-exon	FALSE	canonical	3	23	junction_1	20	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCCTTCCCCCACCTCC	NA	False	NA	NA	False	AATACA	-20	NA	45354511	45359452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45355187_45357683_45357896_45359088
ENSMUSG00000059851.16_4743155_4750513_1	chr7	+	2201	8	NNC	ENSMUSG00000059851.16	novel	2177	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	241.546801143913	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	624	False	NA	16	True	ATTAAA	-17	NA	4743154	4750513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4748785_4748938_4749075_4749261_4749375
ENSMUSG00000059854.9_111240745_111252377_1	chr8	+	1010	5	ISM	ENSMUSG00000059854.9	ENSMUST00000043141.7	15783	87	247136	84508	69624	38124	internal_fragment	FALSE	canonical	3	20	junction_2	2.48746859276655	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATGACCTTGTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	111240744	111252377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_111240920_111241461_111241636_111245712_111245934_111249703_111249842_111252075
ENSMUSG00000059878.13_116601883_116605960_1	chr6	-	2281	2	FSM	ENSMUSG00000059878.13	ENSMUST00000079749.6	3187	2	0	906	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTACTATCTATTTTACT	NA	False	NA	-5	True	AATAAA	-18	NA	116605960	116601882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_116604095_116605891
ENSMUSG00000059897.6_69661698_69680633_1	chr8	+	438	4	FSM	ENSMUSG00000059897.6	ENSMUST00000212681.2	3001	4	8	2555	0	-113	multi-exon	FALSE	canonical	3	90	junction_1	2.49443825784929	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTTGTAGATTACTGTAC	7208	False	NA	NA	False	NA	NA	NA	69661697	69680633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_69661812_69678994_69679122_69679323_69679382_69680494
ENSMUSG00000059897.6_69661698_69681725_1	chr8	+	1530	4	FSM	ENSMUSG00000059897.6	ENSMUST00000212681.2	3001	4	8	1463	0	93	multi-exon	FALSE	canonical	3	90	junction_1	2.49443825784929	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTTGCTGTTCACAATTA	7208	False	NA	NA	False	NA	NA	NA	69661697	69681725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_69661812_69678994_69679122_69679323_69679382_69680494
ENSMUSG00000059900.15_115706092_115708708_1	chr6	-	1255	4	ISM	ENSMUSG00000059900.15	ENSMUST00000127728.4	894	8	3204	-12	3204	0	3prime_fragment	FALSE	canonical	3	55	junction_3	10.6144555520604	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115708708	115706091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145
ENSMUSG00000059900.15_115706092_115711801_1	chr6	-	876	7	FSM	ENSMUSG00000059900.15	ENSMUST00000151849.2	927	7	453	-402	111	0	multi-exon	FALSE	canonical	3	40	junction_5	15.4344492037203	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115711801	115706091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770
ENSMUSG00000059900.15_115706092_115737207_1	chr6	-	1230	11	NNC	ENSMUSG00000059900.15	novel	1554	12	NA	NA	-975	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_9	20.928688444334	448	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115737207	115706091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115719270_115719349_115737065
ENSMUSG00000059900.15_115706092_115737207_2	chr6	-	1155	10	NNC	ENSMUSG00000059900.15	novel	1554	12	NA	NA	-975	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_8	21.1029223884592	420	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115737207	115706091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115719270_115719349_115737065
ENSMUSG00000059920.10_64586092_64591302_1	chr16	-	1707	3	FSM	ENSMUSG00000059920.10	ENSMUST00000076991.7	5522	3	222	3593	222	-3593	multi-exon	FALSE	canonical	3	170	junction_1	18.5	1004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTTTTTACTGCTTAGAC	NA	False	NA	-1	True	AATAAA	-17	NA	64591302	64586091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_64587357_64589286_64589526_64591099
ENSMUSG00000059920.10_64586307_64591302_1	chr16	-	1492	3	FSM	ENSMUSG00000059920.10	ENSMUST00000076991.7	5522	3	222	3808	222	-3808	multi-exon	FALSE	canonical	3	170	junction_1	18.5	944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCATTTTAAAGCATGTTT	NA	False	NA	NA	False	ACTAAA	-18	NA	64591302	64586306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_64587357_64589286_64589526_64591099
ENSMUSG00000059920.10_64586467_64591302_1	chr16	-	1332	3	FSM	ENSMUSG00000059920.10	ENSMUST00000076991.7	5522	3	222	3968	222	-3968	multi-exon	FALSE	canonical	3	170	junction_1	18.5	900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCCTGTGTGCCTTAGAA	NA	False	NA	-18	True	AATAAA	-20	NA	64591302	64586466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_64587357_64589286_64589526_64591099
ENSMUSG00000059920.10_64588752_64591302_1	chr16	-	977	2	ISM	ENSMUSG00000059920.10	ENSMUST00000076991.7	5522	3	222	6253	222	-6253	5prime_fragment	FALSE	canonical	3	207	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGGTCATGTTTATTG	NA	False	NA	NA	False	AATATA	-12	NA	64591302	64588751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_64589526_64591099
ENSMUSG00000059923.14_115534871_115599251_1	chr11	-	2537	6	FSM	ENSMUSG00000059923.14	ENSMUST00000021090.14	2709	6	172	0	151	0	multi-exon	FALSE	canonical	3	859	junction_5	53.4714877294432	715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGTCTTCATTTCTCC	4642	False	NA	-1	True	AATAAA	-19	NA	115599251	115534870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115536781_115537535_115537705_115540596_115540720_115546183_115546282_115589977_115590183_115599219
ENSMUSG00000059923.14_115536250_115599251_1	chr11	-	1158	6	FSM	ENSMUSG00000059923.14	ENSMUST00000021090.14	2709	6	172	1379	151	-774	multi-exon	FALSE	canonical	3	859	junction_5	53.4714877294432	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCTGGTATTTTCTCTA	4642	False	NA	NA	False	AATAAA	-15	NA	115599251	115536249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115536781_115537535_115537705_115540596_115540720_115546183_115546282_115589977_115590183_115599219
ENSMUSG00000060002.15_88295526_88309098_1	chr10	-	1051	7	NIC	ENSMUSG00000060002.15	novel	3898	8	NA	NA	3204	-6660	intron_retention	FALSE	non_canonical	0	0	junction_1	0	180	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAAACCTGGCCCTTGGG	NA	False	NA	NA	False	NA	NA	NA	88309098	88295525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88303144_88303245_88305407_88305507_88308537
ENSMUSG00000060002.15_88298321_88309098_1	chr10	-	880	7	NIC	ENSMUSG00000060002.15	novel	3898	8	NA	NA	3204	7055	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	159	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTTTAAAAAACAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	88309098	88298320	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_88298466_88299224_88299289_88299697_88299733_88303144_88303245_88305407_88305507_88308537_88308643_88308766
ENSMUSG00000060012.10_64889991_64983765_1	chr14	+	1691	15	NNC	ENSMUSG00000060012.10	novel	5603	40	NA	NA	0	21556	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	19.1930312608403	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGAAAGCAGAGCGAG	NA	False	NA	NA	False	TTTAAA	-45	NA	64889990	64983765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_64890106_64907072_64907171_64951522_64951584_64952836_64952930_64954922_64955104_64959755_64959844_64962148_64962284_64964522_64964636_64965661_64965774_64973596_64973810_64974943_64975055_64975955_64976091_64979755_64979887_64982324_64982412_64983747
ENSMUSG00000060036.15_79961992_79967554_1	chr15	-	1283	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10093.1161469368	357962	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCCCACATTTCTTT	3571	False	NA	-1	True	AATAAA	-17	NA	79967554	79961991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_79962096_79962202_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
ENSMUSG00000060036.15_79961992_79967554_2	chr15	-	1280	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9912.1611738209	340736	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCCCACATTTCTTT	3571	False	NA	-1	True	AATAAA	-17	NA	79967554	79961991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_79962096_79962187_79962308_79962549_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
ENSMUSG00000060036.15_79961992_79967554_3	chr15	-	1478	10	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	214	junction_7	9920.80080773053	88918	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCCCACATTTCTTT	3571	False	NA	-1	True	AATAAA	-17	NA	79967554	79961991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
ENSMUSG00000060036.15_79961992_79967554_4	chr15	-	1274	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	10038.849699241	325301	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCCCACATTTCTTT	3571	False	NA	-1	True	AATAAA	-17	NA	79967554	79961991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964730_79965096_79965233_79965815_79965985_79966590_79966784_79967524
ENSMUSG00000060036.15_79961992_79967554_5	chr15	-	2396	8	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	16287	junction_7	5307.90272968101	6939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCCCACATTTCTTT	3571	False	NA	-1	True	AATAAA	-17	NA	79967554	79961991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964754_79965096_79965985_79966590_79966784_79967524
ENSMUSG00000060036.15_79966679_79967554_1	chr15	-	135	2	FSM	ENSMUSG00000060036.15	ENSMUST00000185928.2	614	2	-16	495	0	-495	multi-exon	FALSE	canonical	3	16287	junction_1	0	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCCAAGCCCGTTCACCT	3571	False	NA	NA	False	NA	NA	NA	79967554	79966678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_79966784_79967524
ENSMUSG00000060038.15_85798930_85801791_1	chr8	+	1187	8	ISM	ENSMUSG00000060038.15	ENSMUST00000078665.13	1333	9	544	0	0	0	3prime_fragment	FALSE	canonical	3	191	junction_1	37.2788718406859	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCATCCTTGGTGTCAG	NA	False	NA	23	True	AATAAA	-29	NA	85798929	85801791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_85799246_85799923_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
ENSMUSG00000060038.15_85801664_85807315_1	chr8	+	902	6	NIC	ENSMUSG00000060038.15	novel	1097	7	NA	NA	336	5524	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGACTTGCTCGAGTGT	NA	False	NA	NA	False	NA	NA	NA	85801663	85807315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_85801973_85802451_85802567_85802652_85802762_85802845_85802914_85806209_85806337_85807141
ENSMUSG00000060063.10_149201468_149224963_1	chr5	+	1074	6	NNC	ENSMUSG00000060063.10	novel	1251	5	NA	NA	-109	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	14.8781719307178	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGAGTCTTTTATTGAC	NA	False	NA	20	True	ATTAAA	-32	NA	149201467	149224963	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_149201583_149201868_149201993_149209190_149209291_149215985_149216057_149222153_149222236_149224381
ENSMUSG00000060073.10_71021445_71041279_1	chr12	+	944	11	NNC	ENSMUSG00000060073.10	novel	2846	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	1245.16256368396	5337	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4770	False	NA	5	True	ATTAAA	-16	NA	71021444	71041279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71031455_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060073.10_71021445_71041279_2	chr12	+	932	10	NNC	ENSMUSG00000060073.10	novel	2846	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1325.36553541622	798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4770	False	NA	5	True	ATTAAA	-16	NA	71021444	71041279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033754_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060073.10_71021445_71041279_3	chr12	+	948	11	NNC	ENSMUSG00000060073.10	novel	2846	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1260.34695619897	16805	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4770	False	NA	5	True	ATTAAA	-16	NA	71021444	71041279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037264_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060073.10_71021445_71041279_4	chr12	+	985	11	NNC	ENSMUSG00000060073.10	novel	2846	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_3	1245.16007404671	7532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4770	False	NA	5	True	ATTAAA	-16	NA	71021444	71041279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_71021542_71025506_71025590_71030092_71030217_71031235_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060073.10_71021445_71041279_5	chr12	+	852	10	NIC	ENSMUSG00000060073.10	novel	1394	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	1314.64306755169	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4770	False	NA	5	True	ATTAAA	-16	NA	71021444	71041279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_71021542_71025506_71025590_71030092_71030217_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060073.10_71021445_71041279_6	chr12	+	954	11	FSM	ENSMUSG00000060073.10	ENSMUST00000160027.8	2846	11	50	1842	0	0	multi-exon	FALSE	canonical	3	3391	junction_8	417.753084967664	37553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4770	False	NA	5	True	ATTAAA	-16	NA	71021444	71041279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060073.10_71021445_71041279_7	chr12	+	654	8	NIC	ENSMUSG00000060073.10	novel	1027	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_2	1382.45317299003	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4770	False	NA	5	True	ATTAAA	-16	NA	71021444	71041279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_71021542_71025506_71025590_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060073.10_71021445_71041279_8	chr12	+	945	11	NNC	ENSMUSG00000060073.10	novel	2846	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1204.30011209831	3401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4770	False	NA	5	True	ATTAAA	-16	NA	71021444	71041279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_71021546_71025519_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060073.10_71021445_71041707_1	chr12	+	1382	11	FSM	ENSMUSG00000060073.10	ENSMUST00000160027.8	2846	11	50	1414	0	12	multi-exon	FALSE	canonical	3	3391	junction_8	417.753084967664	38584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGCAGTGC	4770	False	NA	NA	False	NA	NA	NA	71021444	71041707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060073.10_71021489_71025859_1	chr12	+	406	2	FSM	ENSMUSG00000060073.10	ENSMUST00000161041.2	1022	2	7	609	0	-609	multi-exon	FALSE	canonical	3	4712	junction_1	0	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTTTGGTGGTGATAGCT	4814	False	NA	NA	False	TTTAAA	-14	NA	71021488	71025859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_71021542_71025506
ENSMUSG00000060073.10_71021489_71041279_1	chr12	+	786	10	NIC	ENSMUSG00000060073.10	novel	875	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_2	1274.53376612299	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4814	False	NA	5	True	ATTAAA	-16	NA	71021488	71041279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_71021542_71025506_71025590_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060073.10_71021489_71041279_2	chr12	+	901	11	NNC	ENSMUSG00000060073.10	novel	2846	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	1260.2918273162	2283	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4814	False	NA	5	True	ATTAAA	-16	NA	71021488	71041279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040288_71040345_71041124
ENSMUSG00000060073.10_71021489_71041279_3	chr12	+	1018	12	NNC	ENSMUSG00000060073.10	novel	2846	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	1509.62149489574	800	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4814	False	NA	5	True	ATTAAA	-16	NA	71021488	71041279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_71021542_71025506_71025590_71025674_71025783_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060073.10_71021489_71041279_4	chr12	+	890	10	NNC	ENSMUSG00000060073.10	novel	2846	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1290.37222115783	598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4814	False	NA	5	True	ATTAAA	-16	NA	71021488	71041279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71033582_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060073.10_71021489_71041279_5	chr12	+	929	11	NIC	ENSMUSG00000060073.10	novel	875	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_2	1219.11564668821	1596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4814	False	NA	5	True	ATTAAA	-16	NA	71021488	71041279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_71021542_71025506_71025614_71030097_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060073.10_71021489_71041279_6	chr12	+	899	11	NNC	ENSMUSG00000060073.10	novel	2846	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1259.13105354447	2071	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4814	False	NA	5	True	ATTAAA	-16	NA	71021488	71041279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039797_71039855_71040279_71040345_71041124
ENSMUSG00000060073.10_71021489_71041279_7	chr12	+	982	10	NIC	ENSMUSG00000060073.10	novel	875	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	320	junction_2	1171.34194436009	1269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4814	False	NA	5	True	ATTAAA	-16	NA	71021488	71041279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_71021542_71025506_71025590_71030097_71030217_71031266_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060073.10_71021489_71041707_1	chr12	+	1333	11	FSM	ENSMUSG00000060073.10	ENSMUST00000071704.4	875	11	0	-458	0	12	multi-exon	FALSE	canonical	3	320	junction_2	1129.97747322679	5826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGCAGTGC	4814	False	NA	NA	False	NA	NA	NA	71021488	71041707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_71021542_71025506_71025590_71030097_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUSG00000060090.17_20230814_20264195_1	chrX	+	1426	5	FSM	ENSMUSG00000060090.17	ENSMUST00000033372.13	4417	5	94	2897	0	-2897	multi-exon	FALSE	canonical	3	378	junction_2	17.8395627749113	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCTTGCAGTTTTATTT	NA	False	NA	NA	False	CATAAA	-18	NA	20230813	20264195	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_20231068_20243119_20243786_20247943_20248059_20263459_20263546_20263890
ENSMUSG00000060090.17_20230814_20264426_1	chrX	+	1657	5	FSM	ENSMUSG00000060090.17	ENSMUST00000033372.13	4417	5	94	2666	0	-2666	multi-exon	FALSE	canonical	3	378	junction_2	17.8395627749113	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATACATAGCCAGTTAAATA	NA	False	NA	NA	False	AATAAA	-22	NA	20230813	20264426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_20231068_20243119_20243786_20247943_20248059_20263459_20263546_20263890
ENSMUSG00000060098.12_106937655_106978326_1	chr8	+	2281	17	NNC	ENSMUSG00000060098.12	novel	3472	18	NA	NA	0	-1100	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	268.018306277762	1861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTGGCTCAATGGGG	1906	False	NA	26	True	AATAAA	-27	NA	106937654	106978326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_106937715_106939007_106939237_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
ENSMUSG00000060098.12_106937655_106978326_2	chr8	+	2285	18	FSM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	87	1100	0	-1100	multi-exon	FALSE	canonical	3	978	junction_13	68.9507622326015	1894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTGGCTCAATGGGG	1906	False	NA	26	True	AATAAA	-27	NA	106937654	106978326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
ENSMUSG00000060121.16_59060240_59074732_1	chr12	+	934	9	NIC	ENSMUSG00000060121.16	novel	1588	10	NA	NA	0	59	combination_of_known_splicesites	FALSE	canonical	1	10	junction_6	288.756818101322	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTGAAATGTCTGTGAA	NA	False	NA	7	True	AATATA	-18	NA	59060239	59074732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59071788_59071900_59073640_59073700_59074522
ENSMUSG00000060121.16_59060240_59074732_2	chr12	+	952	10	NNC	ENSMUSG00000060121.16	novel	1588	10	NA	NA	0	59	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	320.023648817504	1533	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTGAAATGTCTGTGAA	NA	False	NA	7	True	AATATA	-18	NA	59060239	59074732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_59060345_59060755_59060841_59063651_59063746_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
ENSMUSG00000060121.16_59060240_59074732_3	chr12	+	1003	10	FSM	ENSMUSG00000060121.16	ENSMUST00000021379.8	1588	10	61	524	0	59	multi-exon	FALSE	canonical	1	279	junction_3	161.403565980158	3488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTGAAATGTCTGTGAA	NA	False	NA	7	True	AATATA	-18	NA	59060239	59074732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
ENSMUSG00000060121.16_59060240_59074952_1	chr12	+	1223	10	FSM	ENSMUSG00000060121.16	ENSMUST00000021379.8	1588	10	61	304	0	-233	multi-exon	FALSE	canonical	1	279	junction_3	161.403565980158	3651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCGGGCTGGAAGTTTTC	NA	False	NA	NA	False	NA	NA	NA	59060239	59074952	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
ENSMUSG00000060126.15_76082742_76085737_1	chr14	+	834	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2181.31156875858	113622	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGAACTCTTTGCTGT	1047	False	NA	4	True	AATAAA	-15	NA	76082741	76085737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_76082897_76083056_76083131_76083642_76083834_76084141_76084240_76084683_76084801_76085538
ENSMUSG00000060126.15_76082772_76085738_1	chr14	+	805	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2163.72133141031	36756	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1077	False	NA	5	True	AATAAA	-16	NA	76082771	76085738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085546
ENSMUSG00000060126.15_76082772_76085738_10	chr14	+	797	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2186.55348894099	18047	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1077	False	NA	5	True	AATAAA	-16	NA	76082771	76085738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084224_76084683_76084801_76085538
ENSMUSG00000060126.15_76082772_76085738_11	chr14	+	809	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2190.05236467076	49140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1077	False	NA	5	True	AATAAA	-16	NA	76082771	76085738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_76082901_76083064_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085538
ENSMUSG00000060126.15_76082772_76085738_12	chr14	+	793	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2213.06731935565	19216	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1077	False	NA	5	True	AATAAA	-16	NA	76082771	76085738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_76082897_76083056_76083119_76083650_76083834_76084133_76084240_76084683_76084801_76085538
ENSMUSG00000060126.15_76082772_76085738_13	chr14	+	802	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2186.55348894099	64734	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1077	False	NA	5	True	AATAAA	-16	NA	76082771	76085738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084229_76084683_76084801_76085538
ENSMUSG00000060126.15_76082772_76085738_14	chr14	+	777	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2181.31156875858	1347	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1077	False	NA	5	True	AATAAA	-16	NA	76082771	76085738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_76082897_76083056_76083131_76083642_76083834_76084169_76084240_76084683_76084801_76085538
ENSMUSG00000060126.15_76082772_76085738_2	chr14	+	696	5	NIC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	10	junction_4	2327.03506365933	1073	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1077	False	NA	5	True	AATAAA	-16	NA	76082771	76085738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76085538
ENSMUSG00000060126.15_76082772_76085738_3	chr14	+	788	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2181.31156875858	7351	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1077	False	NA	5	True	AATAAA	-16	NA	76082771	76085738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_76082897_76083056_76083131_76083642_76083834_76084158_76084240_76084683_76084801_76085538
ENSMUSG00000060126.15_76082772_76085738_4	chr14	+	805	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2181.31156875858	112176	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1077	False	NA	5	True	AATAAA	-16	NA	76082771	76085738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_76082897_76083056_76083131_76083642_76083834_76084141_76084240_76084683_76084801_76085538
ENSMUSG00000060126.15_76082772_76085738_5	chr14	+	803	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2677.00342920961	23100	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1077	False	NA	5	True	AATAAA	-16	NA	76082771	76085738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_76082897_76083064_76083131_76083642_76083834_76084133_76084240_76084685_76084801_76085538
ENSMUSG00000060126.15_76082772_76085738_6	chr14	+	793	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2181.31156875858	17215	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1077	False	NA	5	True	AATAAA	-16	NA	76082771	76085738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_76082897_76083056_76083131_76083642_76083834_76084153_76084240_76084683_76084801_76085538
ENSMUSG00000060126.15_76082772_76085738_7	chr14	+	841	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	2163.32201948762	93215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1077	False	NA	5	True	AATAAA	-16	NA	76082771	76085738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085510
ENSMUSG00000060126.15_76082772_76085738_8	chr14	+	789	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2181.31156875858	7454	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1077	False	NA	5	True	AATAAA	-16	NA	76082771	76085738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_76082897_76083056_76083131_76083642_76083810_76084133_76084240_76084683_76084801_76085538
ENSMUSG00000060126.15_76082772_76085738_9	chr14	+	785	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	2	50	junction_4	2166.61306190099	6248	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1077	False	NA	5	True	AATAAA	-16	NA	76082771	76085738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084711_76084801_76085538
ENSMUSG00000060147.16_34101910_34119831_1	chr13	-	1343	7	NIC	ENSMUSG00000060147.16	novel	1504	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_6	142.613697331872	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8607	False	NA	-7	True	AATAAA	-19	NA	34119831	34101909	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119749
ENSMUSG00000060147.16_34101910_34119961_1	chr13	-	1540	8	FSM	ENSMUSG00000060147.16	ENSMUST00000167163.8	1654	8	105	9	0	0	multi-exon	FALSE	canonical	0	0	junction_6	180.800939134278	829	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8477	False	NA	-7	True	AATAAA	-19	NA	34119961	34101909	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119555_34119778_34119904
ENSMUSG00000060147.16_34101910_34119961_2	chr13	-	1318	7	FSM	ENSMUSG00000060147.16	ENSMUST00000043552.17	1547	7	220	9	0	0	multi-exon	FALSE	canonical	3	175	junction_6	98.4119742036845	2550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8477	False	NA	-7	True	AATAAA	-19	NA	34119961	34101909	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119904
ENSMUSG00000060147.16_34101910_34120066_1	chr13	-	1423	7	FSM	ENSMUSG00000060147.16	ENSMUST00000043552.17	1547	7	115	9	0	0	multi-exon	FALSE	canonical	3	175	junction_6	98.4119742036845	2580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8372	False	NA	-7	True	AATAAA	-19	NA	34120066	34101909	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119904
ENSMUSG00000060149.8_17171814_17192790_1	chr17	+	449	4	FSM	ENSMUSG00000060149.8	ENSMUST00000232328.2	1598	4	0	1149	0	-1149	multi-exon	FALSE	canonical	3	27	junction_1	5.55777733351102	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGCATACTGGATCCTTT	NA	False	NA	NA	False	NA	NA	NA	17171813	17192790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_17171971_17191161_17191289_17191432_17191494_17192686
ENSMUSG00000060149.8_17171814_17194419_1	chr17	+	2078	4	FSM	ENSMUSG00000060149.8	ENSMUST00000232328.2	1598	4	0	-480	0	0	multi-exon	FALSE	canonical	3	27	junction_1	5.55777733351102	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCCCAAGTGGCCTACTC	NA	False	NA	24	True	NA	NA	NA	17171813	17194419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_17171971_17191161_17191289_17191432_17191494_17192686
ENSMUSG00000060152.15_115376106_115379031_1	chr5	+	734	5	ISM	ENSMUSG00000060152.15	ENSMUST00000081497.13	1025	6	2211	19	0	6	3prime_fragment	FALSE	canonical	3	535	junction_1	139.257629952545	4085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCACTTGCCTTGAATGT	NA	False	NA	17	True	AATAAA	-19	NA	115376105	115379031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_115376129_115376193_115376337_115378220_115378371_115378531_115378616_115378697
ENSMUSG00000060180.13_67255500_67262414_1	chr11	+	1035	8	ISM	ENSMUSG00000060180.13	ENSMUST00000081911.12	5817	39	37571	-86	-111	2	3prime_fragment	FALSE	canonical	3	79	junction_5	8.27092275778864	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCATGCTCTGCTGTGTTTG	69	False	NA	24	True	AATAAA	-20	NA	67255499	67262414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_67255597_67255677_67255882_67257978_67258105_67258382_67258554_67259930_67260036_67260134_67260231_67261745_67261881_67262313
ENSMUSG00000060279.15_44549798_44550480_1	chr7	-	512	2	ISM	ENSMUSG00000060279.15	ENSMUST00000209067.2	693	3	638	-342	638	0	3prime_fragment	FALSE	canonical	3	770	junction_1	0	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATTGACTGCCCACCCT	3448	False	NA	-3	True	AATAAA	-24	NA	44550480	44549797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_44550240_44550410
ENSMUSG00000060314.14_140390900_140402091_1	chr7	-	2599	3	FSM	ENSMUSG00000060314.14	ENSMUST00000106052.2	3851	3	-46	1298	0	-1298	multi-exon	FALSE	canonical	3	50	junction_1	4	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATACATTAAGCATGTTG	NA	False	NA	NA	False	AAGAAA	-3	NA	140402091	140390899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140393228_140398500_140398628_140401947
ENSMUSG00000060373.16_52311909_52341456_1	chr14	-	1704	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227242.2	2617	9	6	907	0	0	multi-exon	FALSE	canonical	3	1744	junction_2	852.637149891441	10011	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGAAGGAAAGACAATT	8754	False	NA	-17	True	AATAAA	-21	NA	52341456	52311908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUSG00000060373.16_52311909_52341456_2	chr14	-	1657	8	NIC	ENSMUSG00000060373.16	novel	1691	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	1620	junction_2	930.149406475834	7064	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGAAGGAAAGACAATT	8754	False	NA	-17	True	AATAAA	-21	NA	52341456	52311908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
ENSMUSG00000060373.16_52311909_52341456_3	chr14	-	1678	8	FSM	ENSMUSG00000060373.16	ENSMUST00000227536.2	1301	8	-30	-347	0	0	multi-exon	FALSE	canonical	3	1725	junction_7	903.44372897739	7908	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGAAGGAAAGACAATT	8754	False	NA	-17	True	AATAAA	-21	NA	52341456	52311908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
ENSMUSG00000060373.16_52312259_52341456_1	chr14	-	1372	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228198.2	2498	9	0	1126	0	0	multi-exon	FALSE	canonical	3	714	junction_5	1148.92795139643	2839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8754	False	NA	39	True	AATAAA	-15	NA	52341456	52312258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUSG00000060373.16_52312259_52341456_2	chr14	-	1351	8	NNC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1358.28724682887	1367	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8754	False	NA	39	True	AATAAA	-15	NA	52341456	52312258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321872_52341345
ENSMUSG00000060373.16_52312259_52341456_3	chr14	-	1354	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227242.2	2617	9	6	1257	0	0	multi-exon	FALSE	canonical	3	1744	junction_2	852.637149891441	4164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8754	False	NA	39	True	AATAAA	-15	NA	52341456	52312258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUSG00000060373.16_52312259_52341456_4	chr14	-	1393	9	FSM	ENSMUSG00000060373.16	ENSMUST00000111610.12	2847	9	29	1425	0	0	multi-exon	FALSE	canonical	3	714	junction_5	1135.23408929612	2142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8754	False	NA	39	True	AATAAA	-15	NA	52341456	52312258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUSG00000060373.16_52312259_52341456_5	chr14	-	1367	8	NIC	ENSMUSG00000060373.16	novel	2847	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	714	junction_5	1223.61628639314	3783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8754	False	NA	39	True	AATAAA	-15	NA	52341456	52312258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52341345
ENSMUSG00000060373.16_52312259_52341456_6	chr14	-	1330	8	NNC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1373.01892907266	2207	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8754	False	NA	39	True	AATAAA	-15	NA	52341456	52312258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321872_52341345
ENSMUSG00000060373.16_52312259_52341456_7	chr14	-	1333	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228748.2	1691	9	8	350	0	0	multi-exon	FALSE	canonical	3	1620	junction_2	876.028386740407	4805	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8754	False	NA	39	True	AATAAA	-15	NA	52341456	52312258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUSG00000060376.8_25329371_25358168_1	chr7	-	1661	9	FSM	ENSMUSG00000060376.8	ENSMUST00000071329.8	1899	9	238	0	238	0	multi-exon	FALSE	canonical	3	232	junction_4	24.6373699895098	550	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTCCTTCGTCTCTG	9920	False	NA	-9	True	AGTAAA	-19	NA	25358168	25329370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_25329859_25330424_25330597_25330766_25330909_25331062_25331270_25332664_25332827_25337586_25337696_25340881_25340969_25341068_25341252_25358057
ENSMUSG00000060450.15_38429747_38434370_1	chr18	+	638	4	NNC	ENSMUSG00000060450.15	novel	778	6	NA	NA	0	-381	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	97.7991138337494	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGTCTTTGTCTACTA	985	False	NA	NA	False	AATAAA	-15	NA	38429746	38434370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_38429852_38432806_38432980_38433481_38433644_38434172
ENSMUSG00000060450.15_38429747_38450897_1	chr18	+	2489	6	NIC	ENSMUSG00000060450.15	novel	2822	8	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	90.4486594704421	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGTAGACACGGTGTCC	985	False	NA	18	True	AATAAA	-23	NA	38429746	38450897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_38429852_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ENSMUSG00000060459.15_22804604_22822789_1	chr16	-	857	7	ISM	ENSMUSG00000060459.15	ENSMUST00000115349.9	1577	11	25029	0	-4080	0	3prime_fragment	FALSE	canonical	2	5	junction_4	2.74873708374511	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTCTCCTTTCAGCCA	NA	False	NA	NA	False	AATAAA	-21	NA	22822789	22804603	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_22804819_22806994_22807076_22815772_22815860_22815960_22816069_22818563_22818737_22819280_22819366_22822681
ENSMUSG00000060461.6_78274334_78275310_1	chr9	-	470	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	149	0	149	0	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	69229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78275310	78274333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_78274577_78275002_78275186_78275266
ENSMUSG00000060461.6_78274334_78275459_1	chr9	-	615	3	NNC	ENSMUSG00000060461.6	novel	619	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	89078.5	1456968	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78275459	78274333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_78274577_78275002_78275178_78275262
ENSMUSG00000060461.6_78274445_78275459_1	chr9	-	508	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	0	111	0	-111	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	149839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTAGCTTTGTTACATCC	NA	False	NA	NA	False	NA	NA	NA	78275459	78274444	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_78274577_78275002_78275186_78275266
ENSMUSG00000060475.14_13193155_13213056_1	chr17	-	1595	6	FSM	ENSMUSG00000060475.14	ENSMUST00000233867.2	446	6	0	-1149	0	-716	multi-exon	FALSE	canonical	3	14	junction_5	266.82773469038	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGGGTTTTTTTTAATT	NA	False	NA	NA	False	ATTAAA	-18	NA	13213056	13193154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13212949
ENSMUSG00000060510.15_20431804_20432713_1	chr9	-	675	2	ISM	ENSMUSG00000060510.15	ENSMUST00000068296.8	2266	9	-9	21443	0	0	5prime_fragment	FALSE	canonical	3	22	junction_1	0	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	AATACA	-6	NA	20432713	20431803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_20432416_20432650
ENSMUSG00000060538.15_126485392_126497425_1	chr7	-	716	5	NIC	ENSMUSG00000060538.15	novel	915	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	27.4533695563951	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGTGTAAGGTACTTAC	6242	False	NA	-2	True	AATAAA	-14	NA	126497425	126485391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126497395
ENSMUSG00000060548.14_61203800_61219659_1	chr14	-	1039	6	NNC	ENSMUSG00000060548.14	novel	1087	6	NA	NA	-6325	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	25.9615099714943	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAACATTTCCATCCTTTC	NA	False	NA	NA	False	AATAAA	-14	NA	61219659	61203799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61219532
ENSMUSG00000060548.14_61233985_61283686_1	chr14	-	661	5	ISM	ENSMUSG00000060548.14	ENSMUST00000224371.2	1239	6	253	22175	232	-22014	5prime_fragment	FALSE	canonical	3	46	junction_4	15.833114033569	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTGTCTAGAAAGCCCT	NA	False	NA	NA	False	NA	NA	NA	61283686	61233984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61283563
ENSMUSG00000060548.14_61233985_61283918_1	chr14	-	893	5	ISM	ENSMUSG00000060548.14	ENSMUST00000224371.2	1239	6	21	22175	0	-22014	5prime_fragment	FALSE	canonical	3	46	junction_4	15.833114033569	100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTGTCTAGAAAGCCCT	NA	False	NA	NA	False	NA	NA	NA	61283918	61233984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61283563
ENSMUSG00000060586.12_34519364_34535173_1	chr17	+	1174	6	NNC	ENSMUSG00000060586.12	novel	1669	6	NA	NA	-5477	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	92.5237266867261	318	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTTCATAGAGTTTCA	NA	False	NA	12	True	AATAAA	-16	NA	34519363	34535173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_34519432_34524926_34525022_34528564_34528835_34533143_34533426_34534016_34534128_34534825
ENSMUSG00000060586.12_34524900_34535174_3	chr17	+	1143	6	NNC	ENSMUSG00000060586.12	novel	1669	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_3	74.7994652387301	2110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCTTCATAGAGTTTCAA	NA	False	NA	13	True	AATAAA	-17	NA	34524899	34535174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_34525022_34528564_34528835_34533143_34533433_34534016_34534128_34534529_34534554_34534847
ENSMUSG00000060586.12_34524991_34535174_1	chr17	+	1045	6	FSM	ENSMUSG00000060586.12	ENSMUST00000235530.2	1669	6	150	474	0	1	multi-exon	FALSE	canonical	3	177	junction_2	11.7064085013295	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCTTCATAGAGTTTCAA	NA	False	NA	13	True	AATAAA	-17	NA	34524990	34535174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34525022_34528564_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
ENSMUSG00000060586.12_34528406_34535174_1	chr17	+	1074	6	NNC	ENSMUSG00000060586.12	novel	782	5	NA	NA	-143	1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	77.2253844276608	332	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCTTCATAGAGTTTCAA	NA	False	NA	13	True	AATAAA	-17	NA	34528405	34535174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_34528466_34528564_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
ENSMUSG00000060586.12_34533512_34535174_1	chr17	+	509	4	NNC	ENSMUSG00000060586.12	novel	798	3	NA	NA	4963	1	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	88.8831942620326	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCTTCATAGAGTTTCAA	NA	False	NA	13	True	AATAAA	-17	NA	34533511	34535174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_34533559_34534016_34534128_34534529_34534554_34534847
ENSMUSG00000060601.14_44199056_44203372_1	chr7	-	2243	9	FSM	ENSMUSG00000060601.14	ENSMUST00000123358.9	1853	9	-37	-353	0	0	multi-exon	FALSE	canonical	0	0	junction_8	201.405336014218	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAGTACAAGCCATTCC	NA	False	NA	-16	True	AATAAA	-15	NA	44203372	44199055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44202045_44202120_44202179_44203002_44203133_44203232
ENSMUSG00000060636.15_32876869_32880535_1	chr16	+	816	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115076.8	519	5	-307	10	0	0	multi-exon	FALSE	canonical	3	362	junction_1	3846.56847072816	125261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCACATCTGTCC	NA	False	NA	10	True	AATAAA	-25	NA	32876868	32880535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32877276_32877505_32877549_32877759_32877913_32879048_32879194_32880467
ENSMUSG00000060636.15_32876869_32880535_2	chr16	+	458	5	NNC	ENSMUSG00000060636.15	novel	510	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4092.58353610528	57998	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCACATCTGTCC	NA	False	NA	10	True	AATAAA	-25	NA	32876868	32880535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_32876926_32877505_32877549_32877759_32877913_32879056_32879194_32880467
ENSMUSG00000060657.9_13981162_14010792_1	chr16	-	2259	9	NNC	ENSMUSG00000060657.9	novel	2782	11	NA	NA	-29577	-22331	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	633	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCGCGGTGCGCGCCTCC	NA	False	NA	NA	False	NA	NA	NA	14010792	13981161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009586
ENSMUSG00000060675.14_7534850_7563154_1	chr19	+	741	5	FSM	ENSMUSG00000060675.14	ENSMUST00000025925.11	3523	5	26	2756	0	-922	multi-exon	TRUE	canonical	3	141	junction_1	31.8825971338597	1863	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTGAGGATACTGCAG	NA	False	NA	13	True	AATAAA	-15	NA	7534849	7563154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_7534930_7535296_7535361_7552301_7552405_7556318_7556588_7562929
ENSMUSG00000060675.14_7534850_7563154_2	chr19	+	979	5	FSM	ENSMUSG00000060675.14	ENSMUST00000136756.2	1901	5	0	922	0	-922	multi-exon	FALSE	canonical	3	44	junction_1	71.8135606971274	1578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTGAGGATACTGCAG	NA	False	NA	13	True	AATAAA	-15	NA	7534849	7563154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_7535168_7535296_7535361_7552301_7552405_7556318_7556588_7562929
ENSMUSG00000060675.14_7534850_7563154_3	chr19	+	1108	4	NIC	ENSMUSG00000060675.14	novel	1901	5	NA	NA	0	-922	intron_retention	FALSE	canonical	3	191	junction_2	16.9771087709958	767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTGAGGATACTGCAG	NA	False	NA	13	True	AATAAA	-15	NA	7534849	7563154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_7535361_7552301_7552405_7556318_7556588_7562929
ENSMUSG00000060679.15_42890436_42944843_1	chr1	+	1368	11	NNC	ENSMUSG00000060679.15	novel	1418	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	210.043923977819	3030	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCCCTTTTTTTTTAAAC	NA	False	NA	15	True	AATAAA	-17	NA	42890435	42944843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926874_42926947_42934509_42934578_42935252_42935329_42937599_42937769_42938600_42938710_42942454_42942625_42944564
ENSMUSG00000060679.15_42890436_42944843_2	chr1	+	1361	10	NNC	ENSMUSG00000060679.15	novel	1418	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	221.393956445557	894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCCCTTTTTTTTTAAAC	NA	False	NA	15	True	AATAAA	-17	NA	42890435	42944843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_42890587_42901628_42901809_42918914_42918994_42926866_42926947_42934509_42934578_42935252_42935329_42937599_42937769_42938600_42938710_42942454_42942625_42944564
ENSMUSG00000060679.15_42890436_42944843_3	chr1	+	1369	11	NNC	ENSMUSG00000060679.15	novel	1418	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	207.97281072294	3084	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCCCTTTTTTTTTAAAC	NA	False	NA	15	True	AATAAA	-17	NA	42890435	42944843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_42890580_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42937599_42937769_42938600_42938710_42942454_42942625_42944564
ENSMUSG00000060679.15_42890436_42944843_4	chr1	+	1369	11	NNC	ENSMUSG00000060679.15	novel	1418	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	209.926653857961	2917	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCCCTTTTTTTTTAAAC	NA	False	NA	15	True	AATAAA	-17	NA	42890435	42944843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42937599_42937769_42938607_42938710_42942454_42942625_42944564
ENSMUSG00000060679.15_42942525_42944843_1	chr1	+	379	2	FSM	ENSMUSG00000060679.15	ENSMUST00000202358.2	687	2	308	0	308	0	multi-exon	FALSE	canonical	3	692	junction_1	0	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCCCTTTTTTTTTAAAC	NA	False	NA	15	True	AATAAA	-17	NA	42942524	42944843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_42942625_42944564
ENSMUSG00000060703.13_60082337_60114489_1	chr2	-	1011	6	FSM	ENSMUSG00000060703.13	ENSMUST00000074606.11	1354	6	343	0	273	0	multi-exon	FALSE	canonical	3	68	junction_2	6.41872261435249	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTGCCTGGTCTTCTT	4275	False	NA	-4	True	AATAAA	-15	NA	60114489	60082336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_60082836_60085414_60085442_60087376_60087548_60088226_60088344_60102445_60102557_60114403
ENSMUSG00000060703.13_60082550_60114489_1	chr2	-	798	6	FSM	ENSMUSG00000060703.13	ENSMUST00000074606.11	1354	6	343	213	273	-213	multi-exon	FALSE	canonical	3	68	junction_2	6.41872261435249	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCCTTTTATGGTTATT	4275	False	NA	NA	False	TATAAA	-16	NA	60114489	60082549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_60082836_60085414_60085442_60087376_60087548_60088226_60088344_60102445_60102557_60114403
ENSMUSG00000060715.10_53197552_53226767_1	chr1	-	749	8	NNC	ENSMUSG00000060715.10	novel	726	10	NA	NA	0	184	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	16.9356525274526	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGGTGCCCTTGGTTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	53226767	53197551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_53197948_53202384_53202428_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53226712
ENSMUSG00000060715.10_53197552_53226767_2	chr1	-	825	9	NNC	ENSMUSG00000060715.10	novel	726	10	NA	NA	0	184	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	14.6452850774575	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGGTGCCCTTGGTTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	53226767	53197551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_53197948_53202384_53202428_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53224373_53224450_53226712
ENSMUSG00000060715.10_53197552_53226767_4	chr1	-	802	9	FSM	ENSMUSG00000060715.10	ENSMUST00000072235.10	646	9	28	-184	0	184	multi-exon	FALSE	canonical	3	34	junction_2	9.08209089362136	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGGTGCCCTTGGTTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	53226767	53197551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_53197948_53202384_53202405_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53224373_53224450_53226712
ENSMUSG00000060715.10_53197736_53226767_4	chr1	-	641	9	NNC	ENSMUSG00000060715.10	novel	646	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	14.6452850774575	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAGAATGGAATTGCTT	NA	False	NA	NA	False	AATAAA	-28	NA	53226767	53197735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_53197948_53202384_53202428_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53224373_53224450_53226712
ENSMUSG00000060715.10_53197736_53226767_6	chr1	-	565	8	NNC	ENSMUSG00000060715.10	novel	646	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	16.9356525274526	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAGAATGGAATTGCTT	NA	False	NA	NA	False	AATAAA	-28	NA	53226767	53197735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_53197948_53202384_53202428_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53226712
ENSMUSG00000060715.10_53208834_53226767_1	chr1	-	949	7	ISM	ENSMUSG00000060715.10	ENSMUST00000072235.10	646	9	28	11098	0	-11075	5prime_fragment	FALSE	canonical	3	38	junction_5	7.73879117749593	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATACTATTGTTTTATAT	NA	False	NA	NA	False	AATAAA	-17	NA	53226767	53208833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53224373_53224450_53226712
ENSMUSG00000060716.8_79127438_79136419_1	chr12	+	2328	4	NIC	ENSMUSG00000060716.8	novel	4106	16	NA	NA	13055	7990	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	362	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTAGCCCACCCGGAGGC	NA	False	NA	NA	False	NA	NA	NA	79127437	79136419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_79129271_79130389_79130474_79132420_79132626_79136213
ENSMUSG00000060739.9_97267492_97274381_1	chr13	-	1076	6	FSM	ENSMUSG00000060739.9	ENSMUST00000073456.9	2700	6	64	1560	0	0	multi-exon	FALSE	canonical	3	555	junction_1	171.768914533451	12971	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGGGGCATAACGGTTTA	NA	False	NA	NA	False	AATAAA	-28	NA	97274381	97267491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_97267737_97268350_97268544_97270046_97270227_97271801_97271953_97272028_97272217_97274262
ENSMUSG00000060743.13_180630130_180641122_1	chr1	-	1030	4	FSM	ENSMUSG00000060743.13	ENSMUST00000081026.11	888	4	-10	-132	-10	132	multi-exon	TRUE	canonical	1	55	junction_1	1176.16816635869	41923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTTCTGGTCTTTATTA	NA	False	NA	NA	False	ATTAAA	-16	NA	180641122	180630129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_180630768_180637681_180637836_180639363_180639515_180641035
ENSMUSG00000060743.13_180630130_180641122_2	chr1	-	1024	4	NNC	ENSMUSG00000060743.13	novel	888	4	NA	NA	-10	132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1268.98393300397	41423	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTTCTGGTCTTTATTA	NA	False	NA	NA	False	ATTAAA	-16	NA	180641122	180630129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_180630768_180637681_180637836_180639363_180639510_180641036
ENSMUSG00000060791.16_28136912_28145971_1	chr7	+	470	5	NIC	ENSMUSG00000060791.16	novel	477	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	11	junction_1	188.931866025824	770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGACATGGTATCTGCAAAAT	1855	False	NA	NA	False	AATAAA	-26	NA	28136911	28145971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_28137000_28142644_28142695_28144277_28144361_28145341_28145416_28145796
ENSMUSG00000060798.8_40594916_40609047_1	chr3	+	1155	2	ISM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	0	50157	0	1	5prime_fragment	FALSE	canonical	3	119	junction_1	0	399	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGCACTTGAGAACACC	NA	False	NA	2	True	AATAAA	-18	NA	40594915	40609047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_40595159_40608135
ENSMUSG00000060798.8_40594916_40609204_1	chr3	+	1312	2	ISM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	0	50000	0	158	5prime_fragment	FALSE	canonical	3	119	junction_1	0	423	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGAGTATTTTTGCATTG	NA	False	NA	NA	False	AATACA	-15	NA	40594915	40609204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_40595159_40608135
ENSMUSG00000060798.8_40594916_40618998_1	chr3	+	1100	3	ISM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	0	40206	0	9952	5prime_fragment	FALSE	canonical	3	18	junction_2	50.5	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGCAGCAGTGATGAAAGT	NA	False	NA	NA	False	AATAAA	-21	NA	40594915	40618998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_40595159_40608135_40608684_40618689
ENSMUSG00000060802.9_121978167_121983354_1	chr2	+	650	4	FSM	ENSMUSG00000060802.9	ENSMUST00000102476.5	860	4	0	210	0	-210	multi-exon	FALSE	canonical	3	168	junction_2	12.4721912892465	618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTTGATCATATGCCAAAC	NA	False	NA	NA	False	AATAAA	-18	NA	121978166	121983354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_121978286_121981353_121981633_121982127_121982157_121983131
ENSMUSG00000060860.9_4795989_4797561_1	chr7	-	553	5	NNC	ENSMUSG00000060860.9	novel	1126	6	NA	NA	16557	1556	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	230949	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGCGGCCGGAGACGGA	NA	False	NA	NA	False	NA	NA	NA	4797561	4795988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_4795998_4796252_4796409_4796501_4796626_4797062_4797182_4797416
ENSMUSG00000060860.9_4795989_4797561_2	chr7	-	481	5	NNC	ENSMUSG00000060860.9	novel	1126	6	NA	NA	16557	1556	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	96744	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGCGGCCGGAGACGGA	NA	False	NA	NA	False	NA	NA	NA	4797561	4795988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_4795998_4796319_4796409_4796501_4796626_4797062_4797177_4797416
ENSMUSG00000060860.9_4795989_4797561_3	chr7	-	481	5	NNC	ENSMUSG00000060860.9	novel	1126	6	NA	NA	16557	1556	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	117961	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGCGGCCGGAGACGGA	NA	False	NA	NA	False	NA	NA	NA	4797561	4795988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_4795998_4796319_4796409_4796501_4796626_4797067_4797182_4797416
ENSMUSG00000060860.9_4795989_4797561_4	chr7	-	486	5	NIC	ENSMUSG00000060860.9	novel	1126	6	NA	NA	16557	1556	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	260507	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGCGGCCGGAGACGGA	NA	False	NA	NA	False	NA	NA	NA	4797561	4795988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_4795998_4796319_4796409_4796501_4796626_4797062_4797182_4797416
ENSMUSG00000060904.15_88567231_88579066_1	chr10	+	889	6	FSM	ENSMUSG00000060904.15	ENSMUST00000116234.9	2080	6	301	890	301	-890	multi-exon	FALSE	canonical	3	1125	junction_1	68.5466264669531	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTGAGAGGGTTAGCTT	NA	False	NA	NA	False	AATAAA	-15	NA	88567230	88579066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_88567427_88569404_88569543_88571759_88571842_88572952_88573065_88577768_88577948_88578884
ENSMUSG00000060904.15_88567231_88579237_1	chr10	+	1060	6	FSM	ENSMUSG00000060904.15	ENSMUST00000116234.9	2080	6	301	719	301	-719	multi-exon	FALSE	canonical	3	1125	junction_1	68.5466264669531	1010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTGGTTGCATCTTGTTT	NA	False	NA	37	True	ATTAAA	-39	NA	88567230	88579237	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_88567427_88569404_88569543_88571759_88571842_88572952_88573065_88577768_88577948_88578884
ENSMUSG00000060904.15_88567231_88579956_1	chr10	+	1779	6	FSM	ENSMUSG00000060904.15	ENSMUST00000116234.9	2080	6	301	0	301	0	multi-exon	FALSE	canonical	3	1125	junction_1	68.5466264669531	5085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGATGTCTTTAGTGTCTT	NA	False	NA	14	True	AATAAA	-23	NA	88567230	88579956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_88567427_88569404_88569543_88571759_88571842_88572952_88573065_88577768_88577948_88578884
ENSMUSG00000060923.6_30455991_30599406_2	chr11	-	670	3	NNC	ENSMUSG00000060923.6	novel	863	4	NA	NA	181	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	14.5	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTACTGTTGCCTA	NA	False	NA	NA	False	AATAAA	-15	NA	30599406	30455990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_30456440_30582207_30582318_30599295
ENSMUSG00000060950.13_111644550_111649573_1	chr12	+	1218	4	NIC	ENSMUSG00000060950.13	novel	2131	4	NA	NA	0	-763	combination_of_known_junctions	FALSE	canonical	3	64	junction_1	70.7153920067383	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTCCTGGGTTTTGAGA	NA	False	NA	11	True	NA	NA	NA	111644549	111649573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_111644596_111645036_111645397_111647235_111647503_111649028
ENSMUSG00000060950.13_111644550_111650336_1	chr12	+	1981	4	NIC	ENSMUSG00000060950.13	novel	2131	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	64	junction_1	70.7153920067383	1016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTGTCTTGTTCCCACA	NA	False	NA	5	True	AATAAA	-17	NA	111644549	111650336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_111644596_111645036_111645397_111647235_111647503_111649028
ENSMUSG00000060992.10_103181328_103208295_2	chr15	+	1674	9	NNC	ENSMUSG00000060992.10	novel	1676	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	359.006941959344	4540	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTGTGATGGCTCTGT	NA	False	NA	32	True	AATAAA	-20	NA	103181327	103208295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_103181369_103197527_103197597_103199101_103199184_103199755_103199848_103203148_103203205_103204959_103205038_103205171_103205213_103206313_103206353_103207119
ENSMUSG00000060992.10_103181328_103208295_3	chr15	+	1705	9	NNC	ENSMUSG00000060992.10	novel	1676	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	361.80165491606	4330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTGTGATGGCTCTGT	NA	False	NA	32	True	AATAAA	-20	NA	103181327	103208295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_103181369_103197527_103197597_103199101_103199184_103199735_103199848_103203148_103203205_103204959_103205038_103205160_103205213_103206313_103206353_103207119
ENSMUSG00000060992.10_103181328_103208295_4	chr15	+	1671	7	NNC	ENSMUSG00000060992.10	novel	1676	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	402.819645333574	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTGTGATGGCTCTGT	NA	False	NA	32	True	AATAAA	-20	NA	103181327	103208295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_103181369_103197527_103197597_103199101_103199184_103199755_103199848_103203148_103203205_103204959_103205038_103207042
ENSMUSG00000060992.10_103181328_103208295_5	chr15	+	1666	7	NNC	ENSMUSG00000060992.10	novel	1676	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	402.819645333574	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTGTGATGGCTCTGT	NA	False	NA	32	True	AATAAA	-20	NA	103181327	103208295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_103181369_103197527_103197597_103199101_103199184_103199755_103199848_103203148_103203205_103204959_103205080_103207089
ENSMUSG00000061028.8_19314966_19319064_1	chr7	-	504	7	NNC	ENSMUSG00000061028.8	novel	2018	11	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	118.102591936935	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCACATGCTGTCCCCTT	8185	False	NA	-7	True	AATAAA	-23	NA	19319064	19314965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19315102_19316152_19316264_19318079_19318127_19318208_19318268_19318394_19318456_19318708_19318749_19319014
ENSMUSG00000061028.8_19314966_19319064_2	chr7	-	737	6	NNC	ENSMUSG00000061028.8	novel	2255	18	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	104.225524704844	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCACATGCTGTCCCCTT	8185	False	NA	-7	True	AATAAA	-23	NA	19319064	19314965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19315084_19316130_19316240_19318079_19318127_19318208_19318268_19318394_19318749_19319014
ENSMUSG00000061028.8_19314966_19319064_4	chr7	-	484	7	NNC	ENSMUSG00000061028.8	novel	2018	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	96.4722182231179	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCACATGCTGTCCCCTT	8185	False	NA	-7	True	AATAAA	-23	NA	19319064	19314965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19315084_19316130_19316240_19318079_19318127_19318208_19318268_19318394_19318456_19318708_19318749_19319014
ENSMUSG00000061028.8_19314966_19319064_6	chr7	-	508	7	NNC	ENSMUSG00000061028.8	novel	2018	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	118.102591936935	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCACATGCTGTCCCCTT	8185	False	NA	-7	True	AATAAA	-23	NA	19319064	19314965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19315084_19316130_19316264_19318079_19318127_19318208_19318268_19318394_19318456_19318708_19318749_19319014
ENSMUSG00000061032.10_78236218_78240934_1	chr10	-	731	6	NNC	ENSMUSG00000061032.10	novel	1852	12	NA	NA	638	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	364.616510871354	149	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGCTTCTCCCATTTTT	3705	False	NA	-17	True	AATAAA	-21	NA	78240934	78236217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_78236504_78237729_78237801_78238258_78238279_78238443_78238542_78239338_78239419_78240758
ENSMUSG00000061032.10_78236218_78240934_3	chr10	-	1075	5	NNC	ENSMUSG00000061032.10	novel	1852	12	NA	NA	638	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	443.916306864256	1475	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGCTTCTCCCATTTTT	3705	False	NA	-17	True	AATAAA	-21	NA	78240934	78236217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_78236819_78237683_78237801_78238427_78238542_78239338_78239406_78240758
ENSMUSG00000061032.10_78236218_78248824_1	chr10	-	1917	12	NNC	ENSMUSG00000061032.10	novel	1984	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	278.451176781927	4025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGCTTCTCCCATTTTT	NA	False	NA	-17	True	AATAAA	-21	NA	78248824	78236217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_78236819_78237683_78237789_78238427_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399_78241530_78244246_78244309_78244967_78245054_78246799_78246858_78247237_78247321_78248653
ENSMUSG00000061086.13_104475251_104478041_1	chr11	+	442	4	ISM	ENSMUSG00000061086.13	ENSMUST00000123074.8	677	6	4100	-6	-539	0	3prime_fragment	FALSE	canonical	3	41	junction_3	1.69967317119759	572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCGTTGATTTGTTTT	NA	False	NA	12	True	AATAAA	-26	NA	104475250	104478041	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_104475439_104475762_104475841_104476552_104476598_104477910
ENSMUSG00000061099.13_30429004_30455559_1	chr7	-	1123	7	NIC	ENSMUSG00000061099.13	novel	675	6	NA	NA	-12453	196	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	132	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCACGCGACGTACCAGG	1857	False	NA	NA	False	NA	NA	NA	30455559	30429003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_30429280_30431838_30432187_30434128_30434194_30435240_30435388_30454233_30454306_30454426_30454472_30455389
ENSMUSG00000061099.13_30429205_30455559_1	chr7	-	981	8	NIC	ENSMUSG00000061099.13	novel	1457	11	NA	NA	-12453	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	48	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTTTGCCCTCTTGTCT	1857	False	NA	NA	False	AATAAA	-14	NA	30455559	30429204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_30429280_30431838_30432187_30434128_30434194_30435240_30435388_30436725_30436785_30454233_30454306_30454426_30454472_30455389
ENSMUSG00000061119.8_92524508_92582291_1	chr7	+	1419	9	FSM	ENSMUSG00000061119.8	ENSMUST00000076052.8	2967	9	48	1500	0	-931	multi-exon	FALSE	canonical	3	95	junction_2	10.1665812837945	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGCCTTCGATCCTTCCTC	NA	False	NA	NA	False	NA	NA	NA	92524507	92582291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_92524709_92550366_92550508_92554318_92554421_92559342_92559525_92566876_92567035_92568209_92568380_92576887_92577053_92577812_92578001_92582179
ENSMUSG00000061119.8_92524508_92582405_1	chr7	+	1533	9	FSM	ENSMUSG00000061119.8	ENSMUST00000076052.8	2967	9	48	1386	0	-817	multi-exon	FALSE	canonical	3	95	junction_2	10.1665812837945	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTGTTTTCTTTTA	NA	False	NA	NA	False	AATGAA	-18	NA	92524507	92582405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_92524709_92550366_92550508_92554318_92554421_92559342_92559525_92566876_92567035_92568209_92568380_92576887_92577053_92577812_92578001_92582179
ENSMUSG00000061119.8_92524508_92583222_1	chr7	+	2350	9	FSM	ENSMUSG00000061119.8	ENSMUST00000076052.8	2967	9	48	569	0	0	multi-exon	FALSE	canonical	3	95	junction_2	10.1665812837945	637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATTGAAAAAGTAGAATG	NA	False	NA	102	True	AATAAA	-24	NA	92524507	92583222	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_92524709_92550366_92550508_92554318_92554421_92559342_92559525_92566876_92567035_92568209_92568380_92576887_92577053_92577812_92578001_92582179
ENSMUSG00000061130.14_85301433_85322119_1	chr17	+	1949	5	ISM	ENSMUSG00000061130.14	ENSMUST00000080217.14	2670	6	36006	0	325	0	3prime_fragment	FALSE	canonical	3	718	junction_4	374.08855903382	347	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCACACTTTGGCTCAG	NA	False	NA	6	True	AATAAA	-22	NA	85301432	85322119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85320993
ENSMUSG00000061130.14_85301433_85324625_1	chr17	+	2612	5	ISM	ENSMUSG00000061130.14	ENSMUST00000234851.2	1307	7	325	6582	325	0	5prime_fragment	FALSE	canonical	3	708	junction_4	378.362921016317	322	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATTGGCATACTTGTGGA	NA	False	NA	19	True	AATAAA	-31	NA	85301432	85324625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85322836
ENSMUSG00000061132.14_40917371_40923936_1	chr19	-	613	3	NNC	ENSMUSG00000061132.14	novel	1701	17	NA	NA	58655	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	6.5	493	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTGATGCATTTTCAG	NA	False	NA	NA	False	AATAAA	-16	NA	40923936	40917370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_40917737_40922870_40923027_40923845
ENSMUSG00000061132.14_40917371_40926449_1	chr19	-	738	5	NNC	ENSMUSG00000061132.14	novel	2097	17	NA	NA	56142	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	16.0837651064668	332	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTGATGCATTTTCAG	NA	False	NA	NA	False	AATAAA	-16	NA	40926449	40917370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_40917737_40922870_40923027_40924716_40924801_40926094_40926172_40926394
ENSMUSG00000061136.17_53043062_53081266_1	chr2	-	1282	12	NNC	ENSMUSG00000061136.17	novel	1425	14	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	194.121500676235	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGCAAGATCAAAATA	NA	False	NA	9	True	TATAAA	-25	NA	53081266	53043061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53066386_53066429_53067364_53067446_53079980_53080113_53081160
ENSMUSG00000061207.12_35042971_35055903_1	chr17	-	1289	6	NIC	ENSMUSG00000061207.12	novel	1120	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	82	junction_5	4.14728827066554	749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTCTTTCTGTGTCCTTT	5591	False	NA	-6	True	AATAAA	-14	NA	35055903	35042970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_35043638_35043726_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
ENSMUSG00000061207.12_35042971_35055903_2	chr17	-	952	6	NIC	ENSMUSG00000061207.12	novel	1120	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	31.928670501604	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTCTTTCTGTGTCCTTT	5591	False	NA	-6	True	AATAAA	-14	NA	35055903	35042970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_35043301_35043726_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
ENSMUSG00000061232.17_34215007_34219258_1	chr17	-	1586	7	NNC	ENSMUSG00000061232.17	novel	1619	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	24.862399097611	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCAGAATCTGGGTCACT	NA	False	NA	-20	True	AATAAA	-16	NA	34219258	34215006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_34215478_34215589_34215629_34215968_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
ENSMUSG00000061232.17_34215007_34219258_2	chr17	-	1540	8	FSM	ENSMUSG00000061232.17	ENSMUST00000238098.2	1065	8	-33	-442	-1	0	multi-exon	FALSE	canonical	0	0	junction_6	35.1840641107155	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCAGAATCTGGGTCACT	NA	False	NA	-20	True	AATAAA	-16	NA	34219258	34215006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218485_34218707_34218978_34219167
ENSMUSG00000061232.17_34215007_34219258_3	chr17	-	1763	7	NIC	ENSMUSG00000061232.17	novel	1619	8	NA	NA	-1	0	intron_retention	FALSE	canonical	3	37	junction_6	25.5907969568923	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCAGAATCTGGGTCACT	NA	False	NA	-20	True	AATAAA	-16	NA	34219258	34215006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218978_34219167
ENSMUSG00000061232.17_34215007_34219258_4	chr17	-	1537	7	NNC	ENSMUSG00000061232.17	novel	1570	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	25.3355262208798	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCAGAATCTGGGTCACT	NA	False	NA	-20	True	AATAAA	-16	NA	34219258	34215006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_34215451_34215589_34215629_34215990_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
ENSMUSG00000061232.17_34215007_34219258_5	chr17	-	1564	7	NNC	ENSMUSG00000061232.17	novel	1619	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	24.862399097611	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCAGAATCTGGGTCACT	NA	False	NA	-20	True	AATAAA	-16	NA	34219258	34215006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_34215478_34215589_34215629_34215990_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
ENSMUSG00000061244.15_49303988_49324822_1	chr14	-	2771	8	NIC	ENSMUSG00000061244.15	novel	12699	18	NA	NA	-20712	-31684	intron_retention	FALSE	non_canonical	0	0	junction_1	0	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGACGGCGGCCCGCGAGG	NA	False	NA	NA	False	NA	NA	NA	49324822	49303987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_49304322_49311005_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701
ENSMUSG00000061286.8_25358637_25367457_1	chr7	+	1051	6	NIC	ENSMUSG00000061286.8	novel	1020	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	507.074905709206	8832	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGTGTCTGGAGAGTAC	NA	False	NA	31	True	ATTAAA	-43	NA	25358636	25367457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_25358809_25362561_25362676_25363672_25363874_25364845_25364987_25365677_25365768_25367124
ENSMUSG00000061306.17_119995278_119997292_1	chr11	-	1618	2	FSM	ENSMUSG00000061306.17	ENSMUST00000146641.2	971	2	522	-1169	522	0	multi-exon	FALSE	canonical	3	392	junction_1	0	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTCGAGTCGAGTTGGT	NA	False	NA	-12	True	AATAAA	-12	NA	119997292	119995277	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_119996863_119997259
ENSMUSG00000061313.11_26242476_26244441_1	chr8	-	873	2	ISM	ENSMUSG00000061313.11	ENSMUST00000211009.3	2509	13	0	18176	0	0	5prime_fragment	FALSE	canonical	1	18	junction_1	0	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACCTAGGA	NA	False	NA	NA	False	NA	NA	NA	26244441	26242475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_26243201_26244293
ENSMUSG00000061315.15_127871444_127884506_1	chr10	+	882	8	NNC	ENSMUSG00000061315.15	novel	885	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	4013.31572927637	112268	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGTGCTAGATCTTTTCC	4912	False	NA	4	True	AATAAA	-28	NA	127871443	127884506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883874_127883997_127884113_127884237_127884361
ENSMUSG00000061315.15_127871504_127884506_1	chr10	+	822	8	NNC	ENSMUSG00000061315.15	novel	6745	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3867.5424037621	113845	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGTGCTAGATCTTTTCC	4972	False	NA	4	True	AATAAA	-28	NA	127871503	127884506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_127871553_127872357_127872430_127882036_127882123_127882604_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
ENSMUSG00000061315.15_127871504_127884506_2	chr10	+	822	8	NNC	ENSMUSG00000061315.15	novel	6745	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	4013.31572927637	108074	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGTGCTAGATCTTTTCC	4972	False	NA	4	True	AATAAA	-28	NA	127871503	127884506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883874_127883997_127884113_127884237_127884361
ENSMUSG00000061356.14_65863888_65885893_1	chr14	+	1189	8	NNC	ENSMUSG00000061356.14	novel	2745	19	NA	NA	21172	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	15.2917211161425	243	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACTGCTACATCATTA	7388	False	NA	NA	False	AATAAA	-35	NA	65863887	65885893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_65864004_65872451_65872617_65875999_65876158_65877431_65877571_65878687_65878797_65879306_65879444_65882458_65882550_65885619
ENSMUSG00000061356.14_65863888_65885893_2	chr14	+	1160	8	NNC	ENSMUSG00000061356.14	novel	2745	19	NA	NA	21172	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	14.9952373391401	247	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACTGCTACATCATTA	7388	False	NA	NA	False	AATAAA	-35	NA	65863887	65885893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_65863975_65872451_65872617_65875999_65876158_65877431_65877571_65878687_65878797_65879306_65879444_65882458_65882550_65885619
ENSMUSG00000061360.9_81749518_81756112_1	chr15	-	866	4	FSM	ENSMUSG00000061360.9	ENSMUST00000023117.10	1663	4	0	797	0	152	multi-exon	FALSE	canonical	3	1228	junction_3	69.0426599204354	6019	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAACGTCTACTTTTAG	NA	False	NA	-4	True	AATAAA	-22	NA	81756112	81749517	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_81750094_81754532_81754700_81755366_81755391_81756013
ENSMUSG00000061360.9_81749518_81756112_2	chr15	-	859	3	NNC	ENSMUSG00000061360.9	novel	1663	4	NA	NA	0	152	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	697	5693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAACGTCTACTTTTAG	NA	False	NA	-4	True	AATAAA	-22	NA	81756112	81749517	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_81750094_81754532_81754717_81756013
ENSMUSG00000061371.8_81883957_81895510_1	chr10	+	455	4	FSM	ENSMUSG00000061371.8	ENSMUST00000210325.2	2360	4	0	1905	0	-1653	multi-exon	FALSE	canonical	3	37	junction_2	1.24721912892465	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAGTCTTCCACAACATGC	NA	False	NA	NA	False	NA	NA	NA	81883956	81895510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_81884064_81894203_81894331_81894516_81894578_81895350
ENSMUSG00000061374.15_5010058_5016259_1	chr7	-	2544	3	FSM	ENSMUSG00000061374.15	ENSMUST00000208944.2	2306	3	-22	-216	-22	0	multi-exon	FALSE	canonical	3	199	junction_2	122.5	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	4250	False	NA	-4	True	AATAAA	-14	NA	5016259	5010057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_5012205_5015676_5016022_5016207
ENSMUSG00000061374.15_5010058_5017652_1	chr7	-	2478	4	NNC	ENSMUSG00000061374.15	novel	2546	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	182.145241191992	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	2857	False	NA	-4	True	AATAAA	-14	NA	5017652	5010057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_5010959_5011001_5012205_5015676_5016022_5017623
ENSMUSG00000061374.15_5015250_5016259_1	chr7	-	824	2	FSM	ENSMUSG00000061374.15	ENSMUST00000209060.2	741	2	384	-467	-22	0	multi-exon	FALSE	canonical	3	199	junction_1	0	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAAAGAG	4250	False	NA	NA	False	NA	NA	NA	5016259	5015249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_5016022_5016207
ENSMUSG00000061451.14_5120887_5122532_1	chr19	-	590	3	NNC	ENSMUSG00000061451.14	novel	633	3	NA	NA	-372	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	0.5	177	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTATGGACTTTCTCCC	NA	False	NA	-32	True	AATAAA	-8	NA	5122532	5120886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_5121140_5121682_5121923_5122435
ENSMUSG00000061451.14_5120887_5122789_1	chr19	-	514	3	NNC	ENSMUSG00000061451.14	novel	633	3	NA	NA	-629	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	1	106	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTATGGACTTTCTCCC	NA	False	NA	-32	True	AATAAA	-8	NA	5122789	5120886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_5121140_5121754_5121923_5122696
ENSMUSG00000061455.14_48124926_48182231_1	chr4	+	1494	8	FSM	ENSMUSG00000061455.14	ENSMUST00000107720.9	5770	8	0	4276	0	0	multi-exon	FALSE	canonical	3	28	junction_1	8.24621125123532	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTCTTCATTGTGACAT	5	True	NA	13	True	TATAAA	-29	NA	48124925	48182231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_48124959_48131764_48131950_48140419_48140486_48158810_48159034_48166927_48167044_48167205_48167257_48180669_48180757_48181498
ENSMUSG00000061455.14_48124926_48183118_1	chr4	+	2381	8	FSM	ENSMUSG00000061455.14	ENSMUST00000107720.9	5770	8	0	3389	0	887	multi-exon	FALSE	canonical	3	28	junction_1	8.24621125123532	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTATTTATTTCTTATC	5	True	NA	17	True	ATTAAA	-14	NA	48124925	48183118	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_48124959_48131764_48131950_48140419_48140486_48158810_48159034_48166927_48167044_48167205_48167257_48180669_48180757_48181498
ENSMUSG00000061461.12_53424519_53435882_1	chr5	+	878	3	NNC	ENSMUSG00000061461.12	novel	931	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	162.5	2781	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3446	False	NA	13	True	ATTAAA	-14	NA	53424518	53435882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_53424701_53434489_53434542_53435238
ENSMUSG00000061474.12_100872463_100881096_1	chr13	-	624	4	FSM	ENSMUSG00000061474.12	ENSMUST00000078573.5	571	4	69	-122	0	0	multi-exon	FALSE	canonical	3	151	junction_2	492.52884856287	5098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	False	NA	NA	False	AATAAA	-1	NA	100881096	100872462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100872782_100875521_100875704_100877675_100877740_100881037
ENSMUSG00000061474.12_100872463_100881584_1	chr13	-	1009	5	NNC	ENSMUSG00000061474.12	novel	701	4	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	201	junction_4	428.198843996571	12162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	False	NA	NA	False	AATAAA	-1	NA	100881584	100872462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881130_100881238
ENSMUSG00000061474.12_100872637_100881584_1	chr13	-	835	5	NNC	ENSMUSG00000061474.12	novel	469	5	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	201	junction_4	428.198843996571	6156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTCCAGGTGGTCACTT	NA	False	NA	NA	False	AATAAA	-26	NA	100881584	100872636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881130_100881238
ENSMUSG00000061474.12_100872637_100881584_2	chr13	-	829	5	NNC	ENSMUSG00000061474.12	novel	571	4	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	151	junction_2	507.956875630205	3755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTCCAGGTGGTCACTT	NA	False	NA	NA	False	AATAAA	-26	NA	100881584	100872636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_100872782_100875521_100875704_100877675_100877740_100881037_100881130_100881238
ENSMUSG00000061474.12_100872688_100881167_1	chr13	-	476	4	FSM	ENSMUSG00000061474.12	ENSMUST00000109333.8	701	4	0	225	0	0	multi-exon	FALSE	canonical	3	1082	junction_3	81.5693297481079	928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCATATATTAAACAACCTT	NA	False	NA	NA	False	AATAAA	-26	NA	100881167	100872687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037
ENSMUSG00000061477.5_28681082_28685880_1	chr12	-	643	7	NNC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	5923.523268855	127550	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	28685880	28681081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684342_28685414_28685487_28685578_28685663_28685854
ENSMUSG00000061477.5_28681082_28685880_2	chr12	-	642	7	NNC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5626.38197591391	138752	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	28685880	28681081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_28681193_28681622_28681774_28683777_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
ENSMUSG00000061477.5_28681082_28685880_3	chr12	-	1083	6	NIC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-3	0	intron_retention	FALSE	canonical	3	10789	junction_3	2653.3760381823	5446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	28685880	28681081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
ENSMUSG00000061477.5_28681082_28685880_4	chr12	-	639	7	NNC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6842.92941046937	40488	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	28685880	28681081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_28681193_28681634_28681774_28683766_28683830_28684207_28684352_28685414_28685487_28685578_28685663_28685854
ENSMUSG00000061477.5_28681082_28685880_5	chr12	-	635	7	NNC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	5471.63235850753	50725	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	28685880	28681081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_28681193_28681622_28681774_28683766_28683814_28684207_28684352_28685414_28685487_28685578_28685663_28685854
ENSMUSG00000061477.5_28681082_28685880_6	chr12	-	648	7	NNC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	5955.34126272841	178889	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	28685880	28681081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685859
ENSMUSG00000061477.5_28681082_28685880_7	chr12	-	639	7	NNC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5626.38197591391	76533	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	28685880	28681081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_28681193_28681622_28681774_28683780_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
ENSMUSG00000061477.5_28681082_28685880_8	chr12	-	712	7	NNC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	5955.34126272841	225065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	28685880	28681081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685722_28685854
ENSMUSG00000061477.5_28681082_28685880_9	chr12	-	642	7	NNC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5923.523268855	42830	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	28685880	28681081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685425_28685487_28685578_28685663_28685854
ENSMUSG00000061479.16_26886432_26895449_1	chr7	-	1115	7	FSM	ENSMUSG00000061479.16	ENSMUST00000122202.8	1336	7	221	0	0	0	multi-exon	FALSE	canonical	3	597	junction_6	627.600567417065	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	-8	True	ATTAAA	-26	NA	26895449	26886431	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895418
ENSMUSG00000061479.16_26886432_26895578_1	chr7	-	1241	7	NNC	ENSMUSG00000061479.16	novel	1365	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	846.265406884205	3780	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	-8	True	ATTAAA	-26	NA	26895578	26886431	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_26886790_26888290_26888380_26888783_26888958_26891034_26891206_26892294_26892468_26894868_26894982_26895415
ENSMUSG00000061479.16_26886432_26895578_2	chr7	-	1244	7	FSM	ENSMUSG00000061479.16	ENSMUST00000122202.8	1336	7	92	0	0	0	multi-exon	FALSE	canonical	3	597	junction_6	627.600567417065	7810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	-8	True	ATTAAA	-26	NA	26895578	26886431	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895418
ENSMUSG00000061518.12_36730565_36732467_1	chr1	+	708	4	NNC	ENSMUSG00000061518.12	novel	865	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	3422.08916047233	29285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730564	36732467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_36730771_36731291_36731366_36731531_36731632_36732139
ENSMUSG00000061518.12_36730565_36732467_2	chr1	+	534	4	NNC	ENSMUSG00000061518.12	novel	865	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3383.70989694251	10987	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730564	36732467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_36730735_36731291_36731366_36731531_36731632_36732277
ENSMUSG00000061518.12_36730565_36732467_4	chr1	+	561	4	NNC	ENSMUSG00000061518.12	novel	865	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3403.56639750457	74924	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730564	36732467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_36730771_36731291_36731357_36731531_36731632_36732277
ENSMUSG00000061518.12_36730565_36732467_5	chr1	+	553	4	NNC	ENSMUSG00000061518.12	novel	625	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3403.56639750457	32463	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730564	36732467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_36730771_36731291_36731366_36731548_36731632_36732277
ENSMUSG00000061518.12_36730691_36732467_1	chr1	+	427	4	NNC	ENSMUSG00000061518.12	novel	625	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3383.70989694251	3710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730690	36732467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_36730735_36731272_36731366_36731531_36731632_36732277
ENSMUSG00000061518.12_36730691_36732467_3	chr1	+	685	5	NNC	ENSMUSG00000061518.12	novel	625	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	29	junction_2	3571.14788968477	1972	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730690	36732467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_36730771_36730886_36731128_36731291_36731366_36731531_36731632_36732277
ENSMUSG00000061518.12_36730691_36732467_4	chr1	+	801	4	NNC	ENSMUSG00000061518.12	novel	625	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	3370.03999316856	2032	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730690	36732467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_36731128_36731291_36731366_36731531_36731632_36732277
ENSMUSG00000061518.12_36730691_36732467_5	chr1	+	429	4	NNC	ENSMUSG00000061518.12	novel	625	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3403.56639750457	5598	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730690	36732467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_36730771_36731291_36731351_36731531_36731632_36732277
ENSMUSG00000061518.12_36730691_36732467_6	chr1	+	419	4	NNC	ENSMUSG00000061518.12	novel	625	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3383.70989694251	2510	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730690	36732467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_36730746_36731291_36731366_36731531_36731632_36732277
ENSMUSG00000061544.14_21949776_21958493_1	chr17	+	399	3	ISM	ENSMUSG00000061544.14	ENSMUST00000182827.8	640	6	0	5549	0	3431	5prime_fragment	FALSE	canonical	3	170	junction_1	7	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTTACCCCCACTTC	NA	False	NA	NA	False	AATACA	-7	NA	21949775	21958493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_21950033_21955038_21955103_21958415
ENSMUSG00000061544.14_21949776_21988759_1	chr17	+	1111	6	NIC	ENSMUSG00000061544.14	novel	640	6	NA	NA	0	436	combination_of_known_junctions	FALSE	canonical	3	20	junction_5	67.9923525111464	50	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTTTTCCTGTAAAGC	NA	False	NA	NA	False	NA	NA	NA	21949775	21988759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_21950033_21955038_21955103_21958415_21958494_21961476_21961604_21962839_21962939_21988273
ENSMUSG00000061544.14_21949776_21988957_1	chr17	+	1309	6	NIC	ENSMUSG00000061544.14	novel	640	6	NA	NA	0	634	combination_of_known_junctions	FALSE	canonical	3	20	junction_5	67.9923525111464	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTTCCTTTACCTGTG	NA	False	NA	4	True	AATAAA	-17	NA	21949775	21988957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_21950033_21955038_21955103_21958415_21958494_21961476_21961604_21962839_21962939_21988273
ENSMUSG00000061559.16_54624443_54641766_1	chr9	-	1253	11	NIC	ENSMUSG00000061559.16	novel	1162	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_9	332.004593341719	6397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATTTGTGAACGTGCT	5458	False	NA	-3	True	AATAAA	-19	NA	54641766	54624442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637941_54638670_54638722_54641652
ENSMUSG00000061607.16_36152568_36157047_1	chr17	+	546	3	FSM	ENSMUSG00000061607.16	ENSMUST00000174124.2	422	3	0	-124	0	124	multi-exon	FALSE	canonical	3	39	junction_1	58.5	329	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATACGGATAGAATCCCA	9390	False	NA	NA	False	NA	NA	NA	36152567	36157047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_36152658_36155323_36155463_36156730
ENSMUSG00000061613.14_31866055_31877687_1	chr17	-	865	8	NNC	ENSMUSG00000061613.14	novel	1046	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2186.81678076904	20138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877687	31866054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_31866324_31866972_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
ENSMUSG00000061613.14_31866055_31877687_2	chr17	-	855	8	NNC	ENSMUSG00000061613.14	novel	1046	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2123.9980110679	9701	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877687	31866054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_31866330_31866976_31867058_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
ENSMUSG00000061613.14_31866055_31877687_3	chr17	-	859	8	NNC	ENSMUSG00000061613.14	novel	1046	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2186.81678076904	7806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877687	31866054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_31866318_31866972_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
ENSMUSG00000061613.14_31866055_31877687_4	chr17	-	800	7	NIC	ENSMUSG00000061613.14	novel	923	8	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	3	95	junction_5	2338.47820886433	4825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877687	31866054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31873952_31874041_31877626
ENSMUSG00000061613.14_31866055_31877687_5	chr17	-	861	8	NNC	ENSMUSG00000061613.14	novel	923	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2828.39093219203	6902	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877687	31866054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_31866324_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31871475_31871543_31873952_31874041_31877626
ENSMUSG00000061613.14_31866055_31877687_6	chr17	-	861	8	NNC	ENSMUSG00000061613.14	novel	1046	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2186.81678076904	15769	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877687	31866054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_31866324_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
ENSMUSG00000061689.16_156562966_156604880_1	chr2	+	1430	7	FSM	ENSMUSG00000061689.16	ENSMUST00000109566.9	1595	7	1	164	0	5	multi-exon	FALSE	canonical	3	183	junction_1	73.2575365861197	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCGTTTCTCACCCTTCAG	NA	False	NA	16	True	ATTAAA	-19	NA	156562965	156604880	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_156563008_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
ENSMUSG00000061689.16_156562966_156604880_2	chr2	+	1424	7	NNC	ENSMUSG00000061689.16	novel	1595	7	NA	NA	0	5	intron_retention	TRUE	canonical	0	0	junction_6	128.840232674253	266	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCGTTTCTCACCCTTCAG	NA	False	NA	16	True	ATTAAA	-19	NA	156562965	156604880	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_156563008_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604610
ENSMUSG00000061759.16_4382620_4403566_1	chr10	+	701	5	FSM	ENSMUSG00000061759.16	ENSMUST00000095893.11	2429	5	153	1575	0	-392	multi-exon	FALSE	canonical	0	0	junction_3	80.5927260985754	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATTCATTTTGATAAATG	NA	False	NA	NA	False	AATAAA	-19	NA	4382619	4403566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_4382712_4384827_4384934_4389491_4389737_4400646_4400810_4403471
ENSMUSG00000061759.16_4382620_4405140_1	chr10	+	2275	5	FSM	ENSMUSG00000061759.16	ENSMUST00000095893.11	2429	5	153	1	0	0	multi-exon	FALSE	canonical	0	0	junction_3	80.5927260985754	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCACTGGTTTTTATTT	NA	False	NA	8	True	AATAAA	-17	NA	4382619	4405140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_4382712_4384827_4384934_4389491_4389737_4400646_4400810_4403471
ENSMUSG00000061787.16_80992481_80994975_1	chr7	-	462	5	NNC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5415.43370262253	88533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_80992587_80993476_80993549_80994058_80994165_80994604_80994757_80994949
ENSMUSG00000061787.16_80992481_80994975_10	chr7	-	440	5	NNC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5415.43370262253	8830	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_80992571_80993482_80993549_80994058_80994165_80994604_80994757_80994949
ENSMUSG00000061787.16_80992481_80994975_11	chr7	-	449	5	NNC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	5696.52329824956	26604	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_80992598_80993482_80993549_80994058_80994165_80994604_80994739_80994949
ENSMUSG00000061787.16_80992481_80994975_12	chr7	-	454	5	NNC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5323.36582318931	30857	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_80992598_80993482_80993536_80994058_80994165_80994604_80994757_80994949
ENSMUSG00000061787.16_80992481_80994975_13	chr7	-	439	5	NNC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5323.36582318931	10843	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_80992598_80993482_80993549_80994086_80994165_80994604_80994757_80994949
ENSMUSG00000061787.16_80992481_80994975_14	chr7	-	449	5	NNC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5323.36582318931	5144	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_80992598_80993482_80993531_80994058_80994165_80994604_80994757_80994949
ENSMUSG00000061787.16_80992481_80994975_15	chr7	-	469	5	NNC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5323.36582318931	102834	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_80992598_80993482_80993542_80994049_80994165_80994604_80994757_80994949
ENSMUSG00000061787.16_80992481_80994975_16	chr7	-	462	5	NNC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5323.36582318931	32120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_80992598_80993482_80993531_80994045_80994165_80994604_80994757_80994949
ENSMUSG00000061787.16_80992481_80994975_17	chr7	-	453	5	NNC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	5696.52329824956	26922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_80992598_80993482_80993549_80994058_80994165_80994604_80994739_80994945
ENSMUSG00000061787.16_80992481_80994975_18	chr7	-	452	5	NNC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5415.43370262253	27267	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_80992598_80993497_80993549_80994058_80994165_80994604_80994757_80994949
ENSMUSG00000061787.16_80992481_80994975_2	chr7	-	459	5	NNC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5787.57090669307	23689	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_80992587_80993478_80993549_80994058_80994165_80994605_80994757_80994949
ENSMUSG00000061787.16_80992481_80994975_3	chr7	-	1417	3	NIC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	8882	junction_2	2021	818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_80992598_80993482_80994757_80994949
ENSMUSG00000061787.16_80992481_80994975_4	chr7	-	456	5	NNC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5415.43370262253	54380	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_80992587_80993482_80993549_80994058_80994165_80994604_80994757_80994949
ENSMUSG00000061787.16_80992481_80994975_5	chr7	-	450	5	NNC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5323.36582318931	23898	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_80992598_80993482_80993549_80994075_80994165_80994604_80994757_80994949
ENSMUSG00000061787.16_80992481_80994975_6	chr7	-	467	5	NNC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5323.36582318931	111010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_80992598_80993482_80993536_80994045_80994165_80994604_80994757_80994949
ENSMUSG00000061787.16_80992481_80994975_7	chr7	-	907	4	NIC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	8882	junction_3	2020.94301420566	3058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_80992598_80993482_80993549_80994058_80994757_80994949
ENSMUSG00000061787.16_80992481_80994975_8	chr7	-	457	5	NNC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5371.50165223841	46286	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_80992598_80993482_80993549_80994058_80994155_80994604_80994757_80994949
ENSMUSG00000061787.16_80992481_80994975_9	chr7	-	528	5	NNC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5415.43370262253	49355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80994975	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_80992598_80993421_80993549_80994058_80994165_80994604_80994757_80994949
ENSMUSG00000061838.8_95451123_95695781_1	chr6	-	2234	11	FSM	ENSMUSG00000061838.8	ENSMUST00000204224.3	3367	11	0	1133	0	0	multi-exon	FALSE	canonical	3	467	junction_5	91.8564096838103	1897	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCACAGTTCTTGTTTCT	NA	False	NA	-7	True	AATAAA	-22	NA	95695781	95451122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
ENSMUSG00000061877.14_81144023_81145542_1	chr7	-	568	3	ISM	ENSMUSG00000061877.14	ENSMUST00000144156.2	640	6	2487	0	2477	0	3prime_fragment	FALSE	canonical	1	3	junction_1	2	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTAGGATGTTGGAGGTT	5771	False	NA	NA	False	ATTAAA	-16	NA	81145542	81144022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_81144127_81144873_81145122_81145326
ENSMUSG00000061904.13_90952653_90959829_1	chr10	-	1297	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1630.6211286826	10341	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	-4	True	AATAAA	-16	NA	90959829	90952652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_90952987_90953074_90953180_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
ENSMUSG00000061904.13_90952653_90959829_2	chr10	-	1298	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	1	110	junction_4	1601.06863547763	17629	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	-4	True	AATAAA	-16	NA	90959829	90952652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955393_90955569_90957783_90957906_90959419_90959569_90959777
ENSMUSG00000061904.13_90952653_90959829_3	chr10	-	1296	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1601.27180320991	10154	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	-4	True	AATAAA	-16	NA	90959829	90952652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959426_90959569_90959777
ENSMUSG00000061904.13_90952653_90959829_4	chr10	-	1294	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	1	35	junction_2	1621.07269851711	4930	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	-4	True	AATAAA	-16	NA	90959829	90952652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_90952987_90953074_90953186_90953914_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
ENSMUSG00000061904.13_90952653_90959829_5	chr10	-	1296	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1601.27180320991	7792	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	-4	True	AATAAA	-16	NA	90959829	90952652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957899_90959419_90959569_90959777
ENSMUSG00000061904.13_90952653_90959829_6	chr10	-	1298	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1449.17098046167	17910	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	-4	True	AATAAA	-16	NA	90959829	90952652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959782
ENSMUSG00000061904.13_90952653_90959829_7	chr10	-	1308	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1601.27180320991	24804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	-4	True	AATAAA	-16	NA	90959829	90952652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959414_90959569_90959777
ENSMUSG00000061904.13_90952873_90959829_1	chr10	-	1083	8	FSM	ENSMUSG00000061904.13	ENSMUST00000076694.13	1612	8	92	437	-10	0	multi-exon	FALSE	canonical	1	1248	junction_7	1021.77973983373	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGATGCCAGAGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	90959829	90952872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
ENSMUSG00000061979.9_134176893_134197099_1	chr5	-	1669	8	ISM	ENSMUSG00000061979.9	ENSMUST00000076228.3	2321	11	8514	0	0	0	3prime_fragment	FALSE	canonical	3	313	junction_2	27.7613738412028	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGACTTGATCATTTCTT	NA	False	NA	4	True	AATAAA	-42	NA	134197099	134176892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_134177846_134182962_134183049_134184578_134184753_134186429_134186518_134192462_134192645_134194177_134194263_134195503_134195556_134197050
ENSMUSG00000061983.8_23661081_23663100_1	chr10	-	1270	5	NIC	ENSMUSG00000061983.8	novel	584	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	2594	junction_4	786.689066594929	6622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663100	23661080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_23661172_23661473_23661576_23661799_23662779_23662891_23662943_23663053
ENSMUSG00000061983.8_23661081_23663100_2	chr10	-	645	6	NNC	ENSMUSG00000061983.8	novel	584	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	19	junction_4	1824.56125136976	24684	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663100	23661080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522_23662774_23662891_23662943_23663053
ENSMUSG00000061983.8_23661081_23663100_3	chr10	-	650	6	NIC	ENSMUSG00000061983.8	novel	584	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	98	junction_3	1551.61727239677	160801	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663100	23661080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522_23662779_23662891_23662943_23663053
ENSMUSG00000061983.8_23661081_23663100_4	chr10	-	521	5	NNC	ENSMUSG00000061983.8	novel	584	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	1861.54834747852	75716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663100	23661080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662992
ENSMUSG00000061983.8_23661081_23663100_5	chr10	-	624	5	NIC	ENSMUSG00000061983.8	novel	584	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	2594	junction_4	866.215439426012	315141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663100	23661080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662943_23663053
ENSMUSG00000061983.8_23661245_23663100_1	chr10	-	649	5	ISM	ENSMUSG00000061983.8	ENSMUST00000218107.2	584	6	73	164	0	-142	5prime_fragment	FALSE	canonical	3	2594	junction_4	811.213096233043	29698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTGGGAAGACTGAATCA	NA	False	NA	-8	True	NA	NA	NA	23663100	23661244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_23661576_23661799_23661903_23662661_23662779_23662891_23662943_23663053
ENSMUSG00000062006.13_130520488_130523864_1	chr3	-	426	5	FSM	ENSMUSG00000062006.13	ENSMUST00000196202.5	495	5	106	-37	106	0	multi-exon	FALSE	canonical	3	274	junction_4	3611.9776092883	194288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTACGCTTCCGTTATCT	NA	False	NA	-19	True	AATAAA	-12	NA	130523864	130520487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523837
ENSMUSG00000062006.13_130520488_130523864_2	chr3	-	494	5	FSM	ENSMUSG00000062006.13	ENSMUST00000062601.14	624	5	122	8	106	0	multi-exon	FALSE	canonical	3	513	junction_4	3512.03875085398	195136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTACGCTTCCGTTATCT	NA	False	NA	-19	True	AATAAA	-12	NA	130523864	130520487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523769
ENSMUSG00000062006.13_130520488_130523996_1	chr3	-	717	6	NNC	ENSMUSG00000062006.13	novel	480	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_5	4156.35626961886	195026	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTACGCTTCCGTTATCT	NA	False	NA	-19	True	AATAAA	-12	NA	130523996	130520487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523151_130523440_130523966
ENSMUSG00000062014.14_47049131_47059651_2	chr14	-	602	7	NNC	ENSMUSG00000062014.14	novel	4171	7	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	212.21091447478	1365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATGCACTGTTACTTA	NA	False	NA	-2	True	CATAAA	-15	NA	47059651	47049130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_47049281_47051700_47051775_47052361_47052435_47053041_47053106_47053634_47053685_47054842_47054940_47059557
ENSMUSG00000062014.14_47049131_47059651_5	chr14	-	764	8	NNC	ENSMUSG00000062014.14	novel	4171	7	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	265.835072393177	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATGCACTGTTACTTA	NA	False	NA	-2	True	CATAAA	-15	NA	47059651	47049130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_47049281_47051700_47051775_47052361_47052451_47053055_47053106_47053634_47053685_47054842_47054940_47055872_47056033_47059557
ENSMUSG00000062014.14_47049131_47059708_1	chr14	-	654	7	NNC	ENSMUSG00000062014.14	novel	4171	7	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	212.21091447478	1476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATGCACTGTTACTTA	NA	False	NA	-2	True	CATAAA	-15	NA	47059708	47049130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_47049281_47051700_47051775_47052361_47052430_47053041_47053106_47053634_47053685_47054842_47054940_47059557
ENSMUSG00000062044.17_45450109_45453568_1	chr7	+	739	3	NNC	ENSMUSG00000062044.17	novel	5051	16	NA	NA	12937	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGCCTGTGTGTATTTGG	1118	False	NA	19	True	AAAAAG	-25	NA	45450108	45453568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_45450204_45450342_45450474_45453055
ENSMUSG00000062054.8_21366415_21370156_1	chr12	+	687	4	FSM	ENSMUSG00000062054.8	ENSMUST00000223345.2	1890	4	0	1203	0	-621	multi-exon	FALSE	canonical	3	412	junction_2	19.3964487013015	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGCAATTTTGCTACTC	NA	False	NA	19	True	NA	NA	NA	21366414	21370156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770
ENSMUSG00000062054.8_21366415_21370156_2	chr12	+	655	4	NIC	ENSMUSG00000062054.8	novel	1890	4	NA	NA	0	-621	combination_of_known_splicesites	FALSE	canonical	3	85	junction_2	173.484549424117	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGCAATTTTGCTACTC	NA	False	NA	19	True	NA	NA	NA	21366414	21370156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_21366514_21367376_21367430_21367930_21368048_21369770
ENSMUSG00000062054.8_21366415_21373608_1	chr12	+	782	5	NIC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	0	-212	combination_of_known_splicesites	FALSE	canonical	1	8	junction_4	187.52666477064	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTTCATGATTATTGA	NA	False	NA	9	True	ATTAAA	-19	NA	21366414	21373608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21373289
ENSMUSG00000062054.8_21366415_21373608_2	chr12	+	872	6	NIC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	0	-212	combination_of_known_splicesites	FALSE	canonical	3	85	junction_2	143.346293987672	3591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTTCATGATTATTGA	NA	False	NA	9	True	ATTAAA	-19	NA	21366414	21373608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_21366514_21367376_21367430_21367930_21368048_21369770_21369933_21371334_21371457_21373289
ENSMUSG00000062054.8_21366415_21373608_3	chr12	+	742	5	NIC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	0	-212	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	191.209799696564	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTTCATGATTATTGA	NA	False	NA	9	True	ATTAAA	-19	NA	21366414	21373608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_21366514_21367376_21367430_21367898_21368048_21371334_21371457_21373289
ENSMUSG00000062054.8_21366415_21373608_4	chr12	+	750	5	NIC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	0	-212	combination_of_known_splicesites	FALSE	canonical	1	8	junction_4	205.069957575458	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTTCATGATTATTGA	NA	False	NA	9	True	ATTAAA	-19	NA	21366414	21373608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_21366514_21367376_21367430_21367930_21368048_21369770_21369933_21373289
ENSMUSG00000062070.13_105230769_105247305_1	chrX	+	1765	11	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	1441.18720505006	28038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCCTGTCATACTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	105230768	105247305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246551_105246850
ENSMUSG00000062070.13_105230769_105247305_2	chrX	+	1671	11	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	92	junction_9	1399.71478880521	26200	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCCTGTCATACTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	105230768	105247305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246132_105246442_105246542_105246844
ENSMUSG00000062075.14_80738632_80739845_1	chr10	-	415	4	ISM	ENSMUSG00000062075.14	ENSMUST00000105332.3	1643	9	2401	0	2401	0	3prime_fragment	FALSE	canonical	3	276	junction_2	10.7082522694727	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACTAGTCCTTGGTCTGT	2406	False	NA	-6	True	NA	NA	NA	80739845	80738631	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_80738735_80739045_80739157_80739283_80739404_80739764
ENSMUSG00000062078.16_10427521_10501904_1	chr17	-	1901	7	ISM	ENSMUSG00000062078.16	ENSMUST00000233645.2	8547	8	36405	5991	-42	501	3prime_fragment	FALSE	canonical	3	1001	junction_1	105.822834124882	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGAAACCCTTTATTT	NA	False	NA	NA	False	TATAAA	-14	NA	10501904	10427520	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_10428561_10432287_10432363_10435088_10435389_10436644_10436733_10457821_10457966_10492875_10492993_10501767
ENSMUSG00000062101.13_56245381_56261523_1	chr17	-	2190	5	NNC	ENSMUSG00000062101.13	novel	2078	4	NA	NA	-5023	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_3	18.0346887968714	208	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATATTTATGTTGT	9733	False	NA	NA	False	AATAAA	-12	NA	56261523	56245380	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_56246994_56247928_56247990_56248185_56248313_56256223_56256498_56261408
ENSMUSG00000062110.15_74366750_74692390_1	chr5	-	2379	9	FSM	ENSMUSG00000062110.15	ENSMUST00000072857.13	3672	9	20	1273	0	0	multi-exon	FALSE	canonical	3	48	junction_1	6.19979838381862	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCAAGCTGTCGCTAGC	NA	False	NA	-3	True	AATAAA	-25	NA	74692390	74366749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_74367057_74372911_74373032_74385975_74386111_74397099_74397246_74558314_74558565_74623220_74623397_74642810_74642939_74680144_74680314_74691442
ENSMUSG00000062169.14_180978496_180993951_1	chr1	+	660	5	FSM	ENSMUSG00000062169.14	ENSMUST00000134115.8	3268	5	0	2608	0	5	multi-exon	FALSE	canonical	3	1843	junction_1	136.918543302213	10354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTTTTTGTAGATTTCT	NA	False	NA	8	True	AATAAA	-1	NA	180978495	180993951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180978627_180981299_180981369_180983423_180983537_180989639_180989781_180993745
ENSMUSG00000062170.13_67805445_67848173_1	chrX	+	715	4	NNC	ENSMUSG00000062170.13	novel	799	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	303.506543952881	10133	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805444	67848173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_67805838_67815650_67815748_67847216_67847300_67848031
ENSMUSG00000062175.14_156694350_156704883_1	chr2	+	1358	3	Genic_Genomic	ENSMUSG00000062175.14	novel	2900	3	NA	NA	1594	7393	multi-exon	FALSE	non_canonical	0	0	junction_1	0	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCGTCCCCTGGCGTCCGCC	NA	False	NA	NA	False	NA	NA	NA	156694349	156704883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_+_156694611_156695350_156695939_156704374
ENSMUSG00000062198.6_55092461_55126900_1	chr12	-	723	5	NIC	ENSMUSG00000062198.6	novel	1105	8	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_3	91.499658469308	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGAAATGTTTTGTT	NA	False	NA	-14	True	AATAAA	-25	NA	55126900	55092460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_55092729_55095671_55095763_55100085_55100193_55109772_55109895_55126765
ENSMUSG00000062198.6_55092461_55127225_2	chr12	-	1420	8	FSM	ENSMUSG00000062198.6	ENSMUST00000021406.6	1105	8	-330	15	-330	0	multi-exon	FALSE	canonical	3	143	junction_4	27.3898536256157	991	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGAAATGTTTTGTT	NA	False	NA	-14	True	AATAAA	-25	NA	55127225	55092460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55126765
ENSMUSG00000062198.6_55092461_55201741_1	chr12	-	834	6	Fusion	ENSMUSG00000062198.6_ENSMUSG00000112022.3	novel	1105	8	NA	NA	-60	0	multi-exon	FALSE	canonical	3	8	junction_4	79.6552572025224	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGAAATGTTTTGTT	NA	False	NA	-14	True	AATAAA	-25	NA	55201741	55092460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55109772_55109895_55201606
ENSMUSG00000062203.16_11038265_11056895_1	chr16	-	1836	12	ISM	ENSMUSG00000062203.16	ENSMUST00000080030.14	2898	15	15178	349	-1211	0	3prime_fragment	FALSE	canonical	3	1176	junction_9	170.184974718201	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTTCGGTATTTGAAT	9258	False	NA	-17	True	AATAAA	-13	NA	11056895	11038264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_11038744_11040448_11040618_11041075_11041166_11042283_11042458_11045978_11046060_11047072_11047167_11048373_11048515_11048700_11048856_11050395_11050577_11053229_11053308_11055394_11055429_11056735
ENSMUSG00000062210.14_50112596_50224849_1	chr18	+	1681	2	FSM	ENSMUSG00000062210.14	ENSMUST00000148989.3	1002	2	102	-781	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGGGATTTAGATTGTGTT	NA	False	NA	11	True	AATAAA	-24	NA	50112595	50224849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_50112694_50223266
ENSMUSG00000062248.6_51799268_51804796_1	chr13	+	792	3	FSM	ENSMUSG00000062248.6	ENSMUST00000075853.6	692	3	0	-100	0	100	multi-exon	FALSE	canonical	3	3514	junction_2	7.5	27197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTAAGCTCCAAATGAGGA	NA	False	NA	NA	False	AATAAA	-18	NA	51799267	51804796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_51799508_51803620_51803749_51804372
ENSMUSG00000062270.15_89974208_89996673_1	chr9	-	1297	13	FSM	ENSMUSG00000062270.15	ENSMUST00000085248.12	1882	13	95	490	-10	0	multi-exon	FALSE	canonical	3	323	junction_10	2408.59367105002	11624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTCTTCCTTTTTTCA	NA	False	NA	NA	False	AATAAA	-15	NA	89996673	89974207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89985707_89985825_89989287_89989356_89992178_89992226_89996588
ENSMUSG00000062270.15_89974208_89996751_1	chr9	-	1258	12	FSM	ENSMUSG00000062270.15	ENSMUST00000169860.8	1824	12	76	490	0	0	multi-exon	FALSE	canonical	3	3415	junction_7	1167.30044572017	14375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTCTTCCTTTTTTCA	NA	False	NA	NA	False	AATAAA	-15	NA	89996751	89974207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
ENSMUSG00000062300.15_19458086_19483458_1	chr7	-	1948	6	NNC	ENSMUSG00000062300.15	novel	1955	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	371.390683781917	5059	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGGGTGTTTTGTAATC	NA	False	NA	-4	True	AATAAA	-16	NA	19483458	19458085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19458795_19463962_19464112_19464536_19464655_19466846_19467137_19471936_19472300_19483139
ENSMUSG00000062300.15_19458086_19483458_2	chr7	-	1944	6	NNC	ENSMUSG00000062300.15	novel	1955	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	377.269346753748	5079	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGGGTGTTTTGTAATC	NA	False	NA	-4	True	AATAAA	-16	NA	19483458	19458085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19458784_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
ENSMUSG00000062300.15_19458086_19483458_3	chr7	-	1950	6	NNC	ENSMUSG00000062300.15	novel	1955	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	342.27450971406	4947	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGGGTGTTTTGTAATC	NA	False	NA	-4	True	AATAAA	-16	NA	19483458	19458085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19458795_19463962_19464112_19464536_19464655_19466839_19467132_19471936_19472300_19483139
ENSMUSG00000062327.11_8653106_8661328_1	chr17	+	2195	8	FSM	ENSMUSG00000062327.11	ENSMUST00000074667.9	2046	8	-149	0	-149	0	multi-exon	FALSE	canonical	3	22	junction_5	7.70634511957782	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTGGATTATTCTCTA	NA	False	NA	10	True	AATAAA	-20	NA	8653105	8661328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_8653569_8654022_8654288_8654942_8655078_8655809_8655872_8655981_8656044_8657447_8657622_8658741_8658872_8660424
ENSMUSG00000062328.9_75043133_75136345_1	chr18	+	661	7	NNC	ENSMUSG00000062328.9	novel	1326	9	NA	NA	-88496	-106	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4310.47794784858	35418	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	25	False	NA	33	True	AATAAA	-33	NA	75043132	75136345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_75043193_75134261_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_75043133_75136345_2	chr18	+	1079	7	NNC	ENSMUSG00000062328.9	novel	1326	9	NA	NA	-88496	-106	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4310.47794784858	36889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	25	False	NA	33	True	AATAAA	-33	NA	75043132	75136345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_75043596_75134246_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_75043133_75136345_3	chr18	+	1086	7	NNC	ENSMUSG00000062328.9	novel	1326	9	NA	NA	-88496	-106	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4310.47794784858	37414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	25	False	NA	33	True	AATAAA	-33	NA	75043132	75136345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_75043596_75134239_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_75043133_75136345_4	chr18	+	1097	7	NNC	ENSMUSG00000062328.9	novel	1326	9	NA	NA	-88496	-106	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4310.47794784858	37506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	25	False	NA	33	True	AATAAA	-33	NA	75043132	75136345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_75043492_75134124_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_75043133_75136345_5	chr18	+	1028	7	NNC	ENSMUSG00000062328.9	novel	1326	9	NA	NA	-88496	-106	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4310.47794784858	36531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	25	False	NA	33	True	AATAAA	-33	NA	75043132	75136345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_75043492_75134193_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_75043133_75136345_6	chr18	+	1103	7	NNC	ENSMUSG00000062328.9	novel	1326	9	NA	NA	-88496	-106	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4310.47794784858	36981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	25	False	NA	33	True	AATAAA	-33	NA	75043132	75136345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_75043620_75134246_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_75043133_75136345_7	chr18	+	1110	7	NNC	ENSMUSG00000062328.9	novel	1326	9	NA	NA	-88496	-106	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4310.47794784858	36885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	25	False	NA	33	True	AATAAA	-33	NA	75043132	75136345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_75043620_75134239_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_75133548_75136345_1	chr18	+	1206	6	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	0	-106	intron_retention	FALSE	canonical	3	6761	junction_1	2283.59132946331	2579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	33	True	AATAAA	-33	NA	75133547	75136345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_75133615_75134261_75134315_75134420_75134462_75134736_75134872_75135094_75135924_75136264
ENSMUSG00000062328.9_75133548_75136345_2	chr18	+	659	7	NNC	ENSMUSG00000062328.9	novel	775	7	NA	NA	0	-106	at_least_one_novel_splicesite	FALSE	canonical	1	150	junction_4	4107.39291467904	62157	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	33	True	AATAAA	-33	NA	75133547	75136345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_75133615_75134261_75134315_75134420_75134462_75134736_75134872_75135103_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_75133548_75136345_3	chr18	+	1166	5	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	0	-106	intron_retention	FALSE	canonical	3	6761	junction_1	1793.50557568132	2344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	33	True	AATAAA	-33	NA	75133547	75136345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_75133615_75134261_75134315_75134420_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_75133548_75136345_4	chr18	+	943	6	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	0	-106	intron_retention	FALSE	canonical	3	6761	junction_1	1972.2719285129	3113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	33	True	AATAAA	-33	NA	75133547	75136345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_75133615_75134261_75134315_75134420_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_75133548_75136345_5	chr18	+	662	6	NNC	ENSMUSG00000062328.9	novel	775	7	NA	NA	0	-106	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4184.41568680742	10544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	33	True	AATAAA	-33	NA	75133547	75136345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_75133615_75134261_75134350_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_75133548_75136345_6	chr18	+	891	6	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	0	-106	intron_retention	FALSE	canonical	3	6761	junction_1	2106.83161168614	2713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	33	True	AATAAA	-33	NA	75133547	75136345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_75133615_75134261_75134315_75134420_75134462_75134736_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_75133548_75136345_7	chr18	+	659	7	NNC	ENSMUSG00000062328.9	novel	775	7	NA	NA	0	-106	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	4396.03648819656	68561	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	33	True	AATAAA	-33	NA	75133547	75136345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_75133615_75134261_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136273
ENSMUSG00000062328.9_75133548_75136345_9	chr18	+	774	6	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	0	-106	intron_retention	FALSE	canonical	3	6761	junction_1	2234.34863886548	7298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	33	True	AATAAA	-33	NA	75133547	75136345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_75133615_75134261_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_75133548_75136455_2	chr18	+	772	6	NNC	ENSMUSG00000062328.9	novel	775	7	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4184.41568680742	32279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGACTGTCTAGTAGCTTT	NA	False	NA	24	True	ATTAAA	-40	NA	75133547	75136455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_75133615_75134261_75134350_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUSG00000062328.9_75133548_75136455_3	chr18	+	774	6	NNC	ENSMUSG00000062328.9	novel	775	7	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4184.41568680742	33931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGACTGTCTAGTAGCTTT	NA	False	NA	24	True	ATTAAA	-40	NA	75133547	75136455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_75133615_75134261_75134352_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUSG00000062352.16_21320705_21321462_1	chr12	-	297	2	ISM	ENSMUSG00000062352.16	ENSMUST00000173729.8	1701	7	14636	611	662	0	3prime_fragment	FALSE	canonical	3	227	junction_1	0	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACAAAAGAGAAGCCTTGG	NA	False	NA	-11	True	AATAAA	-14	NA	21321462	21320704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_21320959_21321419
ENSMUSG00000062352.16_21320705_21336136_1	chr12	-	1128	7	FSM	ENSMUSG00000062352.16	ENSMUST00000173729.8	1701	7	-38	611	-38	0	multi-exon	FALSE	canonical	3	43	junction_6	78.2148039411693	1023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACAAAAGAGAAGCCTTGG	NA	False	NA	-11	True	AATAAA	-14	NA	21336136	21320704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21335852
ENSMUSG00000062376.8_46678345_46690211_1	chr19	+	566	5	FSM	ENSMUSG00000062376.8	ENSMUST00000074912.8	2176	5	0	1610	0	-1610	multi-exon	FALSE	canonical	3	167	junction_1	5.33853912601566	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGACTC	9071	False	NA	NA	False	NA	NA	NA	46678344	46690211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_46678525_46687994_46688058_46688176_46688221_46689213_46689235_46689953
ENSMUSG00000062376.8_46678345_46690348_1	chr19	+	820	4	NNC	ENSMUSG00000062376.8	novel	2176	5	NA	NA	0	-1473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	82.0893821798329	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTACCTCAGCTTGTTAAAA	9071	False	NA	NA	False	AATAAA	-32	NA	46678344	46690348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_46678643_46687994_46688058_46688176_46688241_46689953
ENSMUSG00000062376.8_46678345_46690348_2	chr19	+	702	4	NNC	ENSMUSG00000062376.8	novel	2176	5	NA	NA	0	-1473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	81.4411853220879	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTACCTCAGCTTGTTAAAA	9071	False	NA	NA	False	AATAAA	-32	NA	46678344	46690348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_46678525_46687994_46688058_46688176_46688241_46689953
ENSMUSG00000062376.8_46678345_46690348_3	chr19	+	703	5	FSM	ENSMUSG00000062376.8	ENSMUST00000074912.8	2176	5	0	1473	0	-1473	multi-exon	FALSE	canonical	3	167	junction_1	5.33853912601566	861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTACCTCAGCTTGTTAAAA	9071	False	NA	NA	False	AATAAA	-32	NA	46678344	46690348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_46678525_46687994_46688058_46688176_46688221_46689213_46689235_46689953
ENSMUSG00000062380.5_124138329_124148754_1	chr8	+	1702	4	FSM	ENSMUSG00000062380.5	ENSMUST00000071134.4	1868	4	166	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	7.03957069398096	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTATTGGAGATTTCT	NA	False	NA	27	True	AATAAA	-27	NA	124138328	124148754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_124138402_124144831_124144941_124145678_124145790_124147345
ENSMUSG00000062397.9_37000872_37007646_1	chr15	-	803	4	NNC	ENSMUSG00000062397.9	novel	4417	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	3245.74802198541	7159	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACCGCAGGATAAATGG	155	False	NA	-26	True	AATAAA	-18	NA	37007646	37000871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_37001168_37002082_37002178_37003929_37004067_37007371
ENSMUSG00000062397.9_37000872_37007646_2	chr15	-	879	5	NNC	ENSMUSG00000062397.9	novel	4417	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	3342.91462462026	7069	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACCGCAGGATAAATGG	155	False	NA	-26	True	AATAAA	-18	NA	37007646	37000871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_37001168_37001890_37001954_37002082_37002191_37003929_37004067_37007371
ENSMUSG00000062444.16_81110147_81114493_1	chr7	-	1237	8	ISM	ENSMUSG00000062444.16	ENSMUST00000147624.2	1459	9	550	0	550	0	3prime_fragment	FALSE	canonical	3	57	junction_7	13.4255315708237	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTCACCTTTCCTTC	NA	False	NA	1	True	AATAAA	-17	NA	81114493	81110146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_81110550_81110675_81110815_81112651_81112750_81112988_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378
ENSMUSG00000062480.13_13135269_13143443_1	chr17	-	1923	12	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3126	7431	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10141	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGTAGGGATTGACAGACG	NA	False	NA	NA	False	NA	NA	NA	13143443	13135268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_13135517_13136696_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ENSMUSG00000062480.13_13135269_13143443_2	chr17	-	1920	12	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3126	7431	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10433	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGTAGGGATTGACAGACG	NA	False	NA	NA	False	NA	NA	NA	13143443	13135268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142431_13142581_13143146
ENSMUSG00000062480.13_13135362_13143443_1	chr17	-	1829	12	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3126	7338	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1642	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGTGGAAAGGCCCGAGCGA	NA	False	NA	NA	False	NA	NA	NA	13143443	13135361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_13135517_13136684_13136771_13136929_13137059_13138250_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ENSMUSG00000062480.13_13135362_13143443_2	chr17	-	1849	12	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3126	7338	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3200	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGTGGAAAGGCCCGAGCGA	NA	False	NA	NA	False	NA	NA	NA	13143443	13135361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141627_13142104_13142298_13142416_13142581_13143146
ENSMUSG00000062480.13_13135362_13143443_3	chr17	-	1837	12	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3126	7338	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3486	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGTGGAAAGGCCCGAGCGA	NA	False	NA	NA	False	NA	NA	NA	13143443	13135361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141500_13141620_13142104_13142298_13142416_13142581_13143146
ENSMUSG00000062480.13_13135362_13143443_4	chr17	-	1829	12	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3126	7338	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1704	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGTGGAAAGGCCCGAGCGA	NA	False	NA	NA	False	NA	NA	NA	13143443	13135361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139332_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ENSMUSG00000062480.13_13135362_13143443_5	chr17	-	1851	12	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3126	7338	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7501	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGTGGAAAGGCCCGAGCGA	NA	False	NA	NA	False	NA	NA	NA	13143443	13135361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139354_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ENSMUSG00000062480.13_13135362_13143443_6	chr17	-	1826	12	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3126	7338	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1372	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGTGGAAAGGCCCGAGCGA	NA	False	NA	NA	False	NA	NA	NA	13143443	13135361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142565_13143146
ENSMUSG00000062480.13_13135362_13143443_7	chr17	-	1827	12	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3126	7338	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1809	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGTGGAAAGGCCCGAGCGA	NA	False	NA	NA	False	NA	NA	NA	13143443	13135361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_13135517_13136684_13136756_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ENSMUSG00000062510.13_190795221_190816755_1	chr1	+	2917	7	NNC	ENSMUSG00000062510.13	novel	4879	6	NA	NA	0	-1916	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	82.1517904045108	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCATTTTTACTGTATTTT	NA	False	NA	16	True	AATAAA	-20	NA	190795220	190816755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190812685_190812754_190814367_190815835_190815887
ENSMUSG00000062526.5_67358114_67361155_1	chr18	-	1253	5	ISM	ENSMUSG00000062526.5	ENSMUST00000073054.5	2494	11	17746	0	17193	0	3prime_fragment	FALSE	canonical	3	17	junction_4	16.1148223694833	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGGATCTTTTCTAA	NA	False	NA	1	True	GATAAA	-23	NA	67361155	67358113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_-_67358956_67359853_67359995_67360667_67360791_67360874_67360950_67361083
ENSMUSG00000062580.10_135229418_135241516_1	chr1	-	813	6	FSM	ENSMUSG00000062580.10	ENSMUST00000081104.10	7280	6	0	6467	0	136	multi-exon	FALSE	canonical	3	2331	junction_5	176.235070289656	5902	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGTATATGAGCTTAGAA	NA	False	NA	-6	True	AATAAA	-19	NA	135241516	135229417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_135229742_135232167_135232279_135233826_135233956_135236872_135236937_135237508_135237609_135241431
ENSMUSG00000062590.14_86179999_86185348_1	chr1	+	517	2	ISM	ENSMUSG00000062590.14	ENSMUST00000135973.8	4696	22	97493	2201	7711	-2201	3prime_fragment	FALSE	canonical	3	60	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGATCTCAGTTTGCTCTCT	NA	False	NA	3	True	AATACA	-14	NA	86179998	86185348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_86180115_86184947
ENSMUSG00000062604.12_23730729_23880975_1	chr5	-	926	10	NIC	ENSMUSG00000062604.12	novel	4259	15	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	183	junction_2	31.1249969011848	232	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAAAAGAAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	23880975	23730728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_23730744_23731787_23731814_23732894_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
ENSMUSG00000062604.12_23730729_23880975_2	chr5	-	899	10	NNC	ENSMUSG00000062604.12	novel	946	9	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_2	64.2716073097043	217	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAAAAGAAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	23880975	23730728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_23730744_23731787_23731814_23732921_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
ENSMUSG00000062604.12_23821031_23880975_1	chr5	-	533	3	NIC	ENSMUSG00000062604.12	novel	440	5	NA	NA	-10	-1303	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	127	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGCTTTTTAAAAGACTT	NA	False	NA	NA	False	NA	NA	NA	23880975	23821030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_23821389_23880717_23880773_23880855
ENSMUSG00000062627.10_94860104_94867312_1	chr4	-	819	4	NNC	ENSMUSG00000062627.10	novel	704	3	NA	NA	0	566	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	32.8937684067971	86	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTATAGCATATACTCTT	NA	False	NA	NA	False	NA	NA	NA	94867312	94860103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_94860704_94861154_94861226_94863453_94863530_94867240
ENSMUSG00000062646.13_120185793_120234562_1	chr2	+	2864	21	NNC	ENSMUSG00000062646.13	novel	3099	5	NA	NA	-48584	-10276	intron_retention	FALSE	non_canonical	0	0	junction_1	0	306	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCTTCTTCCGGCTAGGT	NA	False	NA	NA	False	NA	NA	NA	120185792	120234562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_120185973_120185997_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204968_120205041_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ENSMUSG00000062646.13_120185793_120234562_2	chr2	+	2870	21	NNC	ENSMUSG00000062646.13	novel	3099	5	NA	NA	-48584	-10276	intron_retention	FALSE	non_canonical	0	0	junction_1	0	304	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCTTCTTCCGGCTAGGT	NA	False	NA	NA	False	NA	NA	NA	120185792	120234562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_120185973_120185996_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202103_120204372_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ENSMUSG00000062647.17_26800776_26803330_2	chr2	+	902	8	NNC	ENSMUSG00000062647.17	novel	914	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1810.13123889977	24341	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26800775	26803330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_26800843_26801017_26801139_26801433_26801584_26802030_26802172_26802389_26802458_26802682_26802814_26802999_26803070_26803176
ENSMUSG00000062647.17_26800829_26803330_1	chr2	+	1036	7	NIC	ENSMUSG00000062647.17	novel	914	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	4686	junction_6	264.743114483959	24806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26800828	26803330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
ENSMUSG00000062647.17_26800829_26803330_2	chr2	+	849	8	NNC	ENSMUSG00000062647.17	novel	914	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1810.13123889977	11293	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26800828	26803330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_26800843_26801017_26801139_26801433_26801584_26802030_26802172_26802389_26802458_26802682_26802814_26802999_26803070_26803176
ENSMUSG00000062647.17_26800829_26803330_3	chr2	+	854	8	NNC	ENSMUSG00000062647.17	novel	914	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1774.51788221075	9449	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26800828	26803330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_26800843_26801024_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
ENSMUSG00000062647.17_26800829_26803330_4	chr2	+	853	8	NNC	ENSMUSG00000062647.17	novel	914	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_6	1755.76842878274	24226	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26800828	26803330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_26800843_26801017_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26802806_26802999_26803070_26803176
ENSMUSG00000062647.17_26800829_26803330_5	chr2	+	846	8	NNC	ENSMUSG00000062647.17	novel	914	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1774.51788221075	6633	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26800828	26803330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_26800843_26801032_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
ENSMUSG00000062683.12_102571299_102573560_1	chr15	-	335	2	NNC	ENSMUSG00000062683.12	novel	731	5	NA	NA	2618	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2948	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	9903	False	NA	-11	True	AATAAA	-17	NA	102573560	102571298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_102571564_102573490
ENSMUSG00000062683.12_102571299_102579562_1	chr15	-	749	5	NNC	ENSMUSG00000062683.12	novel	731	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1937.98250443599	79147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3901	False	NA	-11	True	AATAAA	-17	NA	102579562	102571298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_102571564_102573488_102573701_102574197_102574291_102576145_102576215_102579452
ENSMUSG00000062683.12_102571299_102579562_2	chr15	-	719	5	NNC	ENSMUSG00000062683.12	novel	731	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1937.98250443599	39560	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3901	False	NA	-11	True	AATAAA	-17	NA	102579562	102571298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_102571564_102573488_102573683_102574209_102574291_102576145_102576215_102579452
ENSMUSG00000062683.12_102571299_102579562_3	chr15	-	2656	4	NIC	ENSMUSG00000062683.12	novel	731	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	3206	junction_3	741.096634874442	1920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3901	False	NA	-11	True	AATAAA	-17	NA	102579562	102571298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_102573683_102574197_102574291_102576145_102576215_102579452
ENSMUSG00000062683.12_102571299_102579562_4	chr15	-	715	5	NNC	ENSMUSG00000062683.12	novel	731	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1950.37214397663	23079	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3901	False	NA	-11	True	AATAAA	-17	NA	102579562	102571298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_102571548_102573488_102573683_102574197_102574291_102576145_102576215_102579452
ENSMUSG00000062683.12_102571299_102579562_5	chr15	-	716	5	NNC	ENSMUSG00000062683.12	novel	731	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2055.0231750518	62482	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3901	False	NA	-11	True	AATAAA	-17	NA	102579562	102571298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_102571564_102573488_102573683_102574197_102574291_102576145_102576200_102579452
ENSMUSG00000062683.12_102571299_102579562_6	chr15	-	719	5	NNC	ENSMUSG00000062683.12	novel	731	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2055.0231750518	57536	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3901	False	NA	-11	True	AATAAA	-17	NA	102579562	102571298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_102571564_102573488_102573683_102574197_102574291_102576145_102576215_102579464
ENSMUSG00000062683.12_102571299_102579562_7	chr15	-	709	5	NNC	ENSMUSG00000062683.12	novel	731	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2055.0231750518	33134	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3901	False	NA	-11	True	AATAAA	-17	NA	102579562	102571298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_102571564_102573488_102573683_102574197_102574291_102576145_102576193_102579452
ENSMUSG00000062683.12_102571299_102579562_8	chr15	-	709	5	NNC	ENSMUSG00000062683.12	novel	731	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1950.37214397663	12646	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3901	False	NA	-11	True	AATAAA	-17	NA	102579562	102571298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_102571564_102573510_102573683_102574197_102574291_102576145_102576215_102579452
ENSMUSG00000062683.12_102571299_102579562_9	chr15	-	847	6	NNC	ENSMUSG00000062683.12	novel	731	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2311.60970754148	41090	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3901	False	NA	-11	True	AATAAA	-17	NA	102579562	102571298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_102571564_102573488_102573683_102574197_102574291_102576145_102576215_102577989_102578106_102579452
ENSMUSG00000062691.11_79223929_79227603_1	chr17	+	470	5	FSM	ENSMUSG00000062691.11	ENSMUST00000180077.7	602	5	0	132	0	-132	multi-exon	FALSE	canonical	3	686	junction_1	395.694563394546	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTTTCTTTTCTATTTTA	NA	False	NA	NA	False	AATATA	-17	NA	79223928	79227603	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_79223955_79225785_79225902_79226484_79226530_79227187_79227273_79227405
ENSMUSG00000062691.11_79224129_79227735_1	chr17	+	937	5	NIC	ENSMUSG00000062691.11	novel	443	2	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	686.839500902503	4755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTGTGGGTCTGCAG	NA	False	NA	NA	False	AATAAA	-22	NA	79224128	79227735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_79224490_79225785_79225902_79226484_79226530_79227187_79227273_79227405
ENSMUSG00000062691.11_79227274_79238794_1	chr17	+	1183	13	NIC	ENSMUSG00000062691.11	novel	602	5	NA	NA	3145	11059	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCTCAGGCTCTGTCTC	NA	False	NA	NA	False	NA	NA	NA	79227273	79238794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738
ENSMUSG00000062729.13_171097909_171104468_1	chr1	-	2094	9	NIC	ENSMUSG00000062729.13	novel	4412	8	NA	NA	2933	5654	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	24.4731996273475	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCGGGGCCTGACGTCAC	9481	False	NA	NA	False	NA	NA	NA	171104468	171097908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_171097985_171098152_171098260_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
ENSMUSG00000062753.15_27775606_27782645_1	chr17	-	1585	5	NIC	ENSMUSG00000062753.15	novel	862	5	NA	NA	1452	6941	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	10895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTTAAAAAGAGCGACCCA	NA	False	NA	NA	False	NA	NA	NA	27782645	27775605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_27775684_27778506_27778645_27779901_27779986_27780434_27780486_27781411
ENSMUSG00000062753.15_27782743_27784682_1	chr17	-	618	5	FSM	ENSMUSG00000062753.15	ENSMUST00000154473.9	862	5	48	196	0	0	multi-exon	FALSE	canonical	3	219	junction_4	17.0934929139717	1497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCCTCCTTGGGTGGAC	NA	False	NA	49	True	AATAAA	-18	NA	27784682	27782742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27782991_27783122_27783229_27783358_27783385_27783535_27783725_27784633
ENSMUSG00000062753.15_27782743_27784682_3	chr17	-	899	3	NIC	ENSMUSG00000062753.15	novel	677	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	219	junction_2	24	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCCTCCTTGGGTGGAC	NA	False	NA	49	True	AATAAA	-18	NA	27784682	27782742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_27782991_27783122_27783725_27784633
ENSMUSG00000062753.15_27782743_27784682_4	chr17	-	609	5	NNC	ENSMUSG00000062753.15	novel	862	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	110.020452644043	754	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCCTCCTTGGGTGGAC	NA	False	NA	49	True	AATAAA	-18	NA	27784682	27782742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_27782991_27783122_27783229_27783358_27783385_27783535_27783716_27784633
ENSMUSG00000062797.15_89567896_89590250_1	chr7	-	903	5	FSM	ENSMUSG00000062797.15	ENSMUST00000153470.9	2224	5	162	1159	-20	0	multi-exon	FALSE	canonical	3	695	junction_3	227.142026054185	2189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGTAACCTTTTCG	NA	False	NA	14	True	AATAAA	-33	NA	89590250	89567895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89584934_89585173_89590176
ENSMUSG00000062797.15_89567896_89590250_2	chr7	-	665	4	FSM	ENSMUSG00000062797.15	ENSMUST00000208357.2	806	4	157	-16	-20	0	multi-exon	FALSE	canonical	3	430	junction_3	356.664485974642	876	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGTAACCTTTTCG	NA	False	NA	14	True	AATAAA	-33	NA	89590250	89567895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89590176
ENSMUSG00000062797.15_89567896_89590373_1	chr7	-	1026	5	FSM	ENSMUSG00000062797.15	ENSMUST00000153470.9	2224	5	39	1159	0	0	multi-exon	FALSE	canonical	3	695	junction_3	227.142026054185	11760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGTAACCTTTTCG	NA	False	NA	14	True	AATAAA	-33	NA	89590373	89567895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89584934_89585173_89590176
ENSMUSG00000062797.15_89568128_89590373_1	chr7	-	794	5	FSM	ENSMUSG00000062797.15	ENSMUST00000153470.9	2224	5	39	1391	0	0	multi-exon	FALSE	canonical	3	695	junction_3	227.142026054185	1599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATGAAGTCAAAAGGGTCA	NA	False	NA	-10	True	AATAAA	-24	NA	89590373	89568127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89584934_89585173_89590176
ENSMUSG00000062822.9_119599304_119622653_1	chr13	+	2502	13	NIC	ENSMUSG00000062822.9	novel	2565	13	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	42	junction_1	29.2546292633035	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	9	True	AATAAA	-19	NA	119599303	119622653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_119599656_119602609_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
ENSMUSG00000062825.16_120236516_120239318_1	chr11	-	1891	6	NNC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2557.96023424916	9534	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	-21	True	AATAAA	-18	NA	120239318	120236515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239261
ENSMUSG00000062825.16_120236516_120239318_2	chr11	-	1947	7	FSM	ENSMUSG00000062825.16	ENSMUST00000131103.9	1189	7	-3	-755	-3	0	multi-exon	TRUE	canonical	3	13	junction_4	2986.4483365139	14970	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	-21	True	AATAAA	-18	NA	120239318	120236515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238317_120238363_120238461_120238702_120238794_120238924_120239250
ENSMUSG00000062825.16_120236516_120239318_3	chr11	-	2188	5	NIC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	-3	0	intron_retention	FALSE	canonical	3	5636	junction_3	499.114465829232	1984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	-21	True	AATAAA	-18	NA	120239318	120236515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_120237360_120237462_120237645_120237736_120238702_120238794_120238924_120239250
ENSMUSG00000062825.16_120236516_120239318_4	chr11	-	1889	6	NNC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2557.96023424916	9738	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	-21	True	AATAAA	-18	NA	120239318	120236515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238911_120239250
ENSMUSG00000062825.16_120236516_120239318_5	chr11	-	1884	6	NNC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2598.58310623309	7434	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	-21	True	AATAAA	-18	NA	120239318	120236515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_120237342_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
ENSMUSG00000062825.16_120236516_120239318_6	chr11	-	1898	6	NNC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2572.25835405388	15516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	-21	True	AATAAA	-18	NA	120239318	120236515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_120237360_120237462_120237637_120237732_120238176_120238461_120238702_120238794_120238924_120239250
ENSMUSG00000062825.16_120236516_120239318_7	chr11	-	1758	7	NNC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2433.92299362344	1092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	-21	True	AATAAA	-18	NA	120239318	120236515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_120236860_120237003_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
ENSMUSG00000062825.16_120236516_120239318_8	chr11	-	1894	6	NNC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2572.25835405388	10251	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	-21	True	AATAAA	-18	NA	120239318	120236515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_120237360_120237462_120237637_120237736_120238176_120238461_120238702_120238794_120238924_120239250
ENSMUSG00000062825.16_120236516_120239318_9	chr11	-	1897	6	NNC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2629.17728576831	13584	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	-21	True	AATAAA	-18	NA	120239318	120236515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_120237360_120237462_120237645_120237736_120238176_120238466_120238702_120238794_120238924_120239250
ENSMUSG00000062867.14_108437669_108442772_1	chr9	+	1658	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	713.574052915381	7132	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1179	False	NA	25	True	AATAAA	-18	NA	108437668	108442772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440339_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ENSMUSG00000062867.14_108437669_108442772_2	chr9	+	1651	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	707.815875499743	3058	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1179	False	NA	25	True	AATAAA	-18	NA	108437668	108442772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108440002_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ENSMUSG00000062867.14_108437669_108442772_3	chr9	+	1654	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	713.574052915381	5346	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1179	False	NA	25	True	AATAAA	-18	NA	108437668	108442772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440070_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ENSMUSG00000062867.14_108437669_108442772_4	chr9	+	1658	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	703.669065574261	6554	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1179	False	NA	25	True	AATAAA	-18	NA	108437668	108442772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_108437831_108438232_108438282_108438800_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ENSMUSG00000062867.14_108437669_108442772_5	chr9	+	1651	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	713.768132341002	3097	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1179	False	NA	25	True	AATAAA	-18	NA	108437668	108442772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440631_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ENSMUSG00000062867.14_108437669_108442772_6	chr9	+	1656	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	677.463534248661	5982	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1179	False	NA	25	True	AATAAA	-18	NA	108437668	108442772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442703
ENSMUSG00000062867.14_108437669_108442772_7	chr9	+	1651	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	712.918760984247	2497	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1179	False	NA	25	True	AATAAA	-18	NA	108437668	108442772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439384_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ENSMUSG00000062867.14_108437669_108442772_8	chr9	+	1656	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	705.174350005249	5904	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1179	False	NA	25	True	AATAAA	-18	NA	108437668	108442772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438988_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ENSMUSG00000062867.14_108442736_108444142_2	chr9	+	996	5	NIC	ENSMUSG00000062867.14	novel	289	2	NA	NA	333	1359	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGACCCGGTCGTAGGGAC	6246	False	NA	NA	False	NA	NA	NA	108442735	108444142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_108443275_108443357_108443459_108443539_108443607_108443754_108443951_108444049
ENSMUSG00000062901.4_19916335_19941984_1	chr16	+	2142	8	FSM	ENSMUSG00000062901.4	ENSMUST00000023509.5	8172	8	43	5987	0	-5987	multi-exon	FALSE	canonical	3	70	junction_2	11.8562822407122	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAATATTTCAAGCAGTC	NA	False	NA	NA	False	AATAAA	-28	NA	19916334	19941984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_19916422_19920741_19920805_19925412_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655
ENSMUSG00000062908.13_153627994_153631354_1	chr3	-	699	2	ISM	ENSMUSG00000062908.13	ENSMUST00000072697.13	2047	12	18915	0	4425	0	3prime_fragment	TRUE	canonical	3	941	junction_1	0	5765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	2168	False	NA	-6	True	AATAAA	-16	NA	153631354	153627993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_153628640_153631301
ENSMUSG00000062929.9_54907081_54909604_1	chr12	-	1260	4	FSM	ENSMUSG00000062929.9	ENSMUST00000223450.2	2726	4	-21	1487	-21	0	multi-exon	FALSE	canonical	3	31	junction_2	134.037308239162	610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAATGTTGCCTTGTTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	54909604	54907080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_54908023_54908121_54908199_54908453_54908619_54909528
ENSMUSG00000062929.9_54907081_54909604_2	chr12	-	1403	4	FSM	ENSMUSG00000062929.9	ENSMUST00000078124.8	2940	4	58	1479	-21	0	multi-exon	FALSE	canonical	3	200	junction_2	55.9603033904888	1451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAATGTTGCCTTGTTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	54909604	54907080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_54908023_54908121_54908199_54908310_54908619_54909528
ENSMUSG00000062929.9_54907835_54909604_1	chr12	-	649	4	FSM	ENSMUSG00000062929.9	ENSMUST00000078124.8	2940	4	58	2233	-21	0	multi-exon	FALSE	canonical	3	200	junction_2	55.9603033904888	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTTGTTTTTTTTTGTTT	NA	False	NA	NA	False	GGGGCT	-41	NA	54909604	54907834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_54908023_54908121_54908199_54908310_54908619_54909528
ENSMUSG00000062931.16_82063270_82077118_1	chr10	-	391	3	NNC	ENSMUSG00000062931.16	novel	2124	4	NA	NA	-4	-2582	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	74	1142	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTGTGAGGAGTTTTAAA	NA	False	NA	-25	True	NA	NA	NA	82077118	82063269	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_82063426_82063638_82063760_82077004
ENSMUSG00000062931.16_82063270_82077118_2	chr10	-	397	3	ISM	ENSMUSG00000062931.16	ENSMUST00000156218.2	2124	4	-4	2582	-4	-2582	5prime_fragment	FALSE	canonical	3	139	junction_1	4.5	1271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTGTGAGGAGTTTTAAA	NA	False	NA	-25	True	NA	NA	NA	82077118	82063269	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_-_82063426_82063632_82063760_82077004
ENSMUSG00000062937.8_89055643_89098327_1	chr4	+	1522	8	FSM	ENSMUSG00000062937.8	ENSMUST00000058030.10	2797	8	284	991	284	616	multi-exon	FALSE	canonical	3	513	junction_1	29.2609651521041	939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGACTTAGAGAACTTTGAA	5332	False	NA	NA	False	AATAAA	-17	NA	89055642	89098327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
ENSMUSG00000062937.8_89055643_89098460_1	chr4	+	1655	8	FSM	ENSMUSG00000062937.8	ENSMUST00000058030.10	2797	8	284	858	284	749	multi-exon	FALSE	canonical	3	513	junction_1	29.2609651521041	1296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGTGAGGAGCTTACT	5332	False	NA	NA	False	AATAAA	-15	NA	89055642	89098460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
ENSMUSG00000062937.8_89055643_89099318_1	chr4	+	2513	8	FSM	ENSMUSG00000062937.8	ENSMUST00000058030.10	2797	8	284	0	284	0	multi-exon	FALSE	canonical	3	513	junction_1	29.2609651521041	1883	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGATCAGATTATACTTGA	5332	False	NA	NA	False	NA	NA	NA	89055642	89099318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
ENSMUSG00000062963.11_171116138_171122344_1	chr1	-	838	6	NNC	ENSMUSG00000062963.11	novel	914	6	NA	NA	169	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	245.361284639611	3394	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGTGGTTCTCATTGA	7536	False	NA	-2	True	AATAAA	-16	NA	171122344	171116137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_171116545_171116743_171116835_171117090_171117168_171117463_171117521_171117721_171117790_171122206
ENSMUSG00000062963.11_171116138_171122520_1	chr1	-	957	7	FSM	ENSMUSG00000062963.11	ENSMUST00000144576.8	822	7	-6	-129	-6	0	multi-exon	FALSE	canonical	3	36	junction_3	228.930423685645	4511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGTGGTTCTCATTGA	7360	False	NA	-2	True	AATAAA	-16	NA	171122520	171116137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117427_171117521_171117721_171117790_171122206_171122401_171122493
ENSMUSG00000062981.6_95316668_95336385_1	chr10	-	756	7	NNC	ENSMUSG00000062981.6	novel	677	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	39	junction_3	1963.6323201885	651	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95336385	95316667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_95316840_95326107_95326275_95326396_95326444_95326648_95326729_95329492_95329578_95332685_95332750_95336244
ENSMUSG00000062981.6_95316668_95336385_2	chr10	-	623	5	NNC	ENSMUSG00000062981.6	novel	677	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1783.14544765703	888	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95336385	95316667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332744_95336244
ENSMUSG00000062981.6_95316668_95337802_1	chr10	-	995	7	NNC	ENSMUSG00000062981.6	novel	661	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	114	junction_2	1752.58104900553	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337802	95316667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_95316840_95326107_95326275_95326396_95326729_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUSG00000062981.6_95316668_95337802_10	chr10	-	661	6	NNC	ENSMUSG00000062981.6	novel	661	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1596.79509017281	12225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337802	95316667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332744_95336240_95336385_95337767
ENSMUSG00000062981.6_95316668_95337802_2	chr10	-	710	7	NIC	ENSMUSG00000062981.6	novel	661	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_3	1770.46641688944	8098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337802	95316667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_95316840_95326107_95326275_95326396_95326444_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUSG00000062981.6_95316668_95337802_3	chr10	-	1117	6	NNC	ENSMUSG00000062981.6	novel	661	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	132	junction_2	1514.28562695418	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337802	95316667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_95316840_95326107_95326729_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUSG00000062981.6_95316668_95337802_4	chr10	-	688	6	NNC	ENSMUSG00000062981.6	novel	661	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	1622.68523133724	10847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337802	95316667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332750_95336244_95336410_95337767
ENSMUSG00000062981.6_95316668_95337802_5	chr10	-	743	7	NNC	ENSMUSG00000062981.6	novel	661	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_2	1766.8786665253	1319	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337802	95316667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_95316840_95326107_95326275_95326648_95326729_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUSG00000062981.6_95316668_95337802_6	chr10	-	648	6	NNC	ENSMUSG00000062981.6	novel	661	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1600.96126124276	2497	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337802	95316667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_95316840_95326122_95326275_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUSG00000062981.6_95316668_95337802_7	chr10	-	647	6	NNC	ENSMUSG00000062981.6	novel	661	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	1561.41346221941	3458	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337802	95316667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_95316840_95326107_95326259_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUSG00000062981.6_95316668_95337802_8	chr10	-	1527	6	NNC	ENSMUSG00000062981.6	novel	661	6	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_2	1564.45921647066	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337802	95316667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_95316840_95326107_95326810_95329163_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUSG00000062981.6_95316668_95337802_9	chr10	-	594	6	NNC	ENSMUSG00000062981.6	novel	661	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	64	junction_5	1599.66341459696	936	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337802	95316667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332750_95336244_95336316_95337767
ENSMUSG00000062995.13_8630527_8778154_1	chr6	-	1745	14	FSM	ENSMUSG00000062995.13	ENSMUST00000038403.12	2075	14	330	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	7.8401183423021	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTCACTCCTGTTTGGT	-20	True	NA	-1	True	AATAAA	-35	NA	8778154	8630526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_8630798_8643972_8644243_8653496_8653536_8653629_8653693_8656361_8656409_8658219_8658315_8670693_8670793_8672297_8672424_8737016_8737216_8742254_8742379_8749694_8749768_8754588_8754752_8758365_8758459_8778071
ENSMUSG00000062997.7_38891592_38895137_1	chr2	-	412	4	NNC	ENSMUSG00000062997.7	novel	946	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	16635.847164749	2056	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCTTCATGTTTTACAT	NA	False	NA	-9	True	AATAAA	-19	NA	38895137	38891591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_38891778_38894118_38894201_38894778_38894881_38895095
ENSMUSG00000062997.7_38891592_38895137_3	chr2	-	465	4	NNC	ENSMUSG00000062997.7	novel	946	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	18823.4659047336	34383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCTTCATGTTTTACAT	NA	False	NA	-9	True	AATAAA	-19	NA	38895137	38891591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_38891778_38894118_38894201_38894743_38894899_38895095
ENSMUSG00000062997.7_38891592_38895137_4	chr2	-	411	4	NNC	ENSMUSG00000062997.7	novel	946	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	16799.5275528808	2422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCTTCATGTTTTACAT	NA	False	NA	-9	True	AATAAA	-19	NA	38895137	38891591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_38891742_38894118_38894201_38894743_38894881_38895095
ENSMUSG00000062997.7_38891592_38895137_5	chr2	-	429	4	NNC	ENSMUSG00000062997.7	novel	946	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	16635.847164749	15394	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCTTCATGTTTTACAT	NA	False	NA	-9	True	AATAAA	-19	NA	38895137	38891591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_38891778_38894118_38894201_38894761_38894881_38895095
ENSMUSG00000062997.7_38891592_38895137_6	chr2	-	441	4	NNC	ENSMUSG00000062997.7	novel	946	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	1	1302	junction_3	18213.5016280658	76758	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCTTCATGTTTTACAT	NA	False	NA	-9	True	AATAAA	-19	NA	38895137	38891591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_38891778_38894118_38894201_38894743_38894875_38895095
ENSMUSG00000062997.7_38891592_38895137_7	chr2	-	440	4	NNC	ENSMUSG00000062997.7	novel	946	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16799.5275528808	26284	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCTTCATGTTTTACAT	NA	False	NA	-9	True	AATAAA	-19	NA	38895137	38891591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_38891772_38894119_38894201_38894743_38894881_38895095
ENSMUSG00000062997.7_38891592_38895190_1	chr2	-	500	4	NNC	ENSMUSG00000062997.7	novel	946	4	NA	NA	-56	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	18827.2369424961	18418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCTTCATGTTTTACAT	NA	False	NA	-9	True	AATAAA	-19	NA	38895190	38891591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_38891778_38894118_38894201_38894743_38894899_38895113
ENSMUSG00000063011.8_25967587_25967965_1	chr17	-	309	2	ISM	ENSMUSG00000063011.8	ENSMUST00000075884.8	2114	16	5323	0	917	0	3prime_fragment	FALSE	canonical	3	51	junction_1	0	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCCTGTAGTGTTCCTA	4121	False	NA	-2	True	AATAAA	-22	NA	25967965	25967586	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_25967805_25967874
ENSMUSG00000063018.7_7278345_7288904_1	chrX	-	489	2	NNC	ENSMUSG00000063018.7	novel	885	4	NA	NA	323	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTACTTTGTGGCTTAT	NA	False	NA	-31	True	NA	NA	NA	7288904	7278344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_7278772_7288842
ENSMUSG00000063018.7_7278345_7295839_1	chrX	-	676	3	ISM	ENSMUSG00000063018.7	ENSMUST00000150671.2	885	4	15543	0	-6612	0	3prime_fragment	FALSE	canonical	3	36	junction_1	10.5	637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTACTTTGTGGCTTAT	NA	False	NA	-31	True	NA	NA	NA	7295839	7278344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_7278772_7290368_7290524_7295745
ENSMUSG00000063018.7_7278345_7295839_2	chrX	-	661	3	NNC	ENSMUSG00000063018.7	novel	885	4	NA	NA	-6612	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	25.5	526	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTACTTTGTGGCTTAT	NA	False	NA	-31	True	NA	NA	NA	7295839	7278344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_7278772_7290383_7290524_7295745
ENSMUSG00000063047.10_27664220_27678596_1	chr7	-	530	6	FSM	ENSMUSG00000063047.10	ENSMUST00000206685.2	3940	6	-24	3434	0	-2087	multi-exon	FALSE	canonical	3	18	junction_4	22.29798197147	383	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCATAAAGCAATTAATAACT	NA	False	NA	NA	False	AATAAA	-17	NA	27678596	27664219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_27664295_27671047_27671147_27673143_27673271_27674177_27674231_27676164_27676259_27678514
ENSMUSG00000063049.5_48121559_48127736_1	chr8	-	1009	2	FSM	ENSMUSG00000063049.5	ENSMUST00000080353.3	2812	2	457	1346	457	231	multi-exon	FALSE	canonical	3	212	junction_1	0	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGACCTTAATTTTCTG	NA	False	NA	-13	True	ATTAAA	-16	NA	48127736	48121558	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_48122372_48127540
ENSMUSG00000063049.5_48121559_48128591_1	chr8	-	859	2	FSM	ENSMUSG00000063049.5	ENSMUST00000125536.2	628	2	0	-231	0	231	multi-exon	FALSE	canonical	0	0	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGACCTTAATTTTCTG	NA	False	NA	-13	True	ATTAAA	-16	NA	48128591	48121558	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_48122372_48128545
ENSMUSG00000063172.14_107110470_107137130_1	chr4	+	655	6	NNC	ENSMUSG00000063172.14	novel	365	3	NA	NA	-320	1	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	143.950547063914	2178	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGATTCCATTTTTTTTA	NA	False	NA	3	True	ATTAAA	-14	NA	107110469	107137130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_107110583_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
ENSMUSG00000063172.14_107110470_107137130_2	chr4	+	649	6	NNC	ENSMUSG00000063172.14	novel	365	3	NA	NA	-320	1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	154.293227330301	1555	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGATTCCATTTTTTTTA	NA	False	NA	3	True	ATTAAA	-14	NA	107110469	107137130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_107110577_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
ENSMUSG00000063172.14_107111100_107137130_1	chr4	+	596	6	NNC	ENSMUSG00000063172.14	novel	607	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	156.438358467481	1725	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGATTCCATTTTTTTTA	NA	False	NA	3	True	ATTAAA	-14	NA	107111099	107137130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_107111160_107119663_107119777_107130809_107130917_107132419_107132489_107135129_107135168_107136921
ENSMUSG00000063172.14_107111100_107137130_2	chr4	+	426	4	NIC	ENSMUSG00000063172.14	novel	607	6	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	160.918889161244	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGATTCCATTTTTTTTA	NA	False	NA	3	True	ATTAAA	-14	NA	107111099	107137130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_107111160_107119663_107119777_107135123_107135168_107136921
ENSMUSG00000063179.14_130972885_130989568_1	chr7	+	825	5	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	59.6547357717726	781	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGATTTGGATAAATTT	NA	False	NA	22	True	ATTAAA	-22	NA	130972884	130989568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_130973119_130975793_130975993_130985653_130985730_130986228_130986323_130989346
ENSMUSG00000063179.14_130972885_130989568_2	chr7	+	1186	7	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_6	82.5873275186131	1537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGATTTGGATAAATTT	NA	False	NA	22	True	ATTAAA	-22	NA	130972884	130989568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_130973119_130975264_130975560_130975793_130975993_130985653_130985730_130986228_130986323_130986527_130986594_130989346
ENSMUSG00000063179.14_130972885_130994497_1	chr7	+	1167	6	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	73.3746550247427	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTTGTTTATACTTACAA	NA	False	NA	NA	False	AATAAA	-21	NA	130972884	130994497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_130973119_130975264_130975560_130975793_130975993_130985653_130985730_130986228_130986323_130994228
ENSMUSG00000063179.14_130972885_130994497_2	chr7	+	872	5	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_4	87.3480824059693	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTTGTTTATACTTACAA	NA	False	NA	NA	False	AATAAA	-21	NA	130972884	130994497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_130973119_130975793_130975993_130985653_130985730_130986228_130986323_130994228
ENSMUSG00000063200.5_43551866_43555470_1	chr13	+	940	8	NNC	ENSMUSG00000063200.5	novel	1800	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	503.032355838477	11432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTCACATTTCTTTTCT	NA	False	NA	31	True	TATAAA	-31	NA	43551865	43555470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_43552135_43552210_43552272_43552986_43553046_43554068_43554098_43554328_43554418_43554772_43554895_43554975_43555054_43555237
ENSMUSG00000063200.5_43551866_43555470_2	chr13	+	926	8	NNC	ENSMUSG00000063200.5	novel	1800	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	505.842356664523	2894	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTCACATTTCTTTTCT	NA	False	NA	31	True	TATAAA	-31	NA	43551865	43555470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_43552135_43552210_43552272_43552986_43553046_43554075_43554098_43554328_43554411_43554772_43554895_43554975_43555054_43555237
ENSMUSG00000063200.5_43551866_43555470_4	chr13	+	928	8	NNC	ENSMUSG00000063200.5	novel	1800	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	500.810159967358	13200	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTCACATTTCTTTTCT	NA	False	NA	31	True	TATAAA	-31	NA	43551865	43555470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_43552135_43552210_43552272_43552991_43553046_43554068_43554098_43554328_43554411_43554772_43554895_43554975_43555054_43555237
ENSMUSG00000063200.5_43551866_43555470_6	chr13	+	922	7	NNC	ENSMUSG00000063200.5	novel	1800	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	542.550970467804	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTCACATTTCTTTTCT	NA	False	NA	31	True	TATAAA	-31	NA	43551865	43555470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_43552135_43552210_43552272_43552986_43553046_43554310_43554411_43554772_43554895_43554975_43555054_43555237
ENSMUSG00000063200.5_43551866_43555470_7	chr13	+	904	7	NIC	ENSMUSG00000063200.5	novel	1800	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	541.815979420648	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTCACATTTCTTTTCT	NA	False	NA	31	True	TATAAA	-31	NA	43551865	43555470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_43552135_43552210_43552272_43552986_43553046_43554328_43554411_43554772_43554895_43554975_43555054_43555237
ENSMUSG00000063200.5_43551866_43555470_8	chr13	+	916	7	NNC	ENSMUSG00000063200.5	novel	1800	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	542.550970467804	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTCACATTTCTTTTCT	NA	False	NA	31	True	TATAAA	-31	NA	43551865	43555470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_43552135_43552210_43552272_43552986_43553058_43554328_43554411_43554772_43554895_43554975_43555054_43555237
ENSMUSG00000063200.5_43551866_43555734_1	chr13	+	1192	8	NNC	ENSMUSG00000063200.5	novel	1800	8	NA	NA	0	164	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	500.810159967358	13532	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAACCTCAGCTAGTACC	NA	False	NA	2	True	AATAAA	-17	NA	43551865	43555734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_43552135_43552210_43552272_43552991_43553046_43554068_43554098_43554328_43554411_43554772_43554895_43554975_43555054_43555237
ENSMUSG00000063235.19_90741057_90748140_1	chr2	-	1067	4	FSM	ENSMUSG00000063235.19	ENSMUST00000111461.13	1316	4	249	0	-127	0	multi-exon	FALSE	canonical	3	312	junction_3	26.7332502076846	1554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGGGACTCCCCTCACA	NA	False	NA	-1	True	AATAAA	-26	NA	90748140	90741056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_90741664_90744327_90744520_90747772_90747854_90747953
ENSMUSG00000063235.19_90741338_90748140_1	chr2	-	786	4	FSM	ENSMUSG00000063235.19	ENSMUST00000111461.13	1316	4	249	281	-127	0	multi-exon	FALSE	canonical	3	312	junction_3	26.7332502076846	1157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAAGATTGTCTGGCTA	NA	False	NA	NA	False	NA	NA	NA	90748140	90741337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_90741664_90744327_90744520_90747772_90747854_90747953
ENSMUSG00000063236.7_76832706_76834932_1	chr15	+	1130	4	NNC	ENSMUSG00000063236.7	novel	1043	5	NA	NA	0	0	intron_retention	FALSE	canonical	1	3	junction_1	139.303824626446	1080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGATGGTGTGAGAGAGAG	NA	False	NA	24	True	AATAAA	-16	NA	76832705	76834932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_76833129_76833276_76833353_76833743_76833891_76834448
ENSMUSG00000063236.7_76832706_76834932_2	chr15	+	1139	4	NNC	ENSMUSG00000063236.7	novel	1043	5	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	140.715631288386	888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGATGGTGTGAGAGAGAG	NA	False	NA	24	True	AATAAA	-16	NA	76832705	76834932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_76833129_76833267_76833353_76833743_76833891_76834448
ENSMUSG00000063236.7_76832706_76834932_3	chr15	+	1046	5	NNC	ENSMUSG00000063236.7	novel	1043	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	125.124937562422	1232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGATGGTGTGAGAGAGAG	NA	False	NA	24	True	AATAAA	-16	NA	76832705	76834932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_76832745_76832828_76833129_76833276_76833353_76833743_76833891_76834448
ENSMUSG00000063236.7_76832706_76834932_4	chr15	+	1055	5	NNC	ENSMUSG00000063236.7	novel	1043	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	126.191075357967	1067	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGATGGTGTGAGAGAGAG	NA	False	NA	24	True	AATAAA	-16	NA	76832705	76834932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_76832745_76832828_76833129_76833267_76833353_76833743_76833891_76834448
ENSMUSG00000063245.12_146493236_146742066_1	chr4	+	652	6	NNC	ENSMUSG00000063245.12	novel	387	3	NA	NA	-202182	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	92.6701677995675	2479	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGACTCTGTAAACAGTT	NA	False	NA	NA	False	AAAAAG	-37	NA	146493235	146742066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146493332_146697966_146698060_146728915_146728962_146739355_146739414_146740256_146740384_146741834
ENSMUSG00000063245.12_146500170_146703661_1	chr4	+	349	3	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-195248	-38403	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_2	136	2617	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGAGTTCTTCTCTGGT	NA	False	NA	NA	False	NA	NA	NA	146500169	146703661	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146500373_146697966_146698060_146703608
ENSMUSG00000063245.12_146516841_146742069_1	chr4	+	611	5	NNC	ENSMUSG00000063245.12	novel	387	3	NA	NA	-178577	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	47.6759897642409	1182	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1855	False	NA	NA	False	AATACA	-2	NA	146516840	146742069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146516986_146728915_146728962_146739355_146739414_146740256_146740384_146741834
ENSMUSG00000063245.12_146695418_146703642_1	chr4	+	510	3	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	0	-38422	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_2	103.5	727	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	146695417	146703642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146695757_146697966_146698060_146703564
ENSMUSG00000063245.12_146695418_146703693_1	chr4	+	343	3	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	0	-38371	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_2	180.5	1582	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTGCTGTTCACATTTC	NA	False	NA	NA	False	NA	NA	NA	146695417	146703693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146695586_146697966_146698060_146703611
ENSMUSG00000063245.12_146695418_146742069_1	chr4	+	727	6	FSM	ENSMUSG00000063245.12	ENSMUST00000130825.8	1275	6	0	548	0	5	multi-exon	FALSE	canonical	0	0	junction_4	145.190357806571	7180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146695417	146742069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_146695586_146697966_146698060_146728915_146728962_146739355_146739414_146740256_146740384_146741834
ENSMUSG00000063245.12_146695418_146742069_2	chr4	+	965	6	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	91.2521780561976	4027	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146695417	146742069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146695801_146697966_146698060_146728915_146728985_146739355_146739414_146740256_146740384_146741834
ENSMUSG00000063245.12_146695418_146742069_3	chr4	+	942	6	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	88.7166275283275	4368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146695417	146742069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146695801_146697966_146698060_146728915_146728962_146739355_146739414_146740256_146740384_146741834
ENSMUSG00000063245.12_146695418_146742069_4	chr4	+	750	6	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	148.349587124468	5602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146695417	146742069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146695586_146697966_146698060_146728915_146728985_146739355_146739414_146740256_146740384_146741834
ENSMUSG00000063245.12_146695418_146742069_5	chr4	+	807	7	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	0	5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	131.831963751841	4316	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146695417	146742069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146695586_146697966_146698060_146703611_146703692_146728915_146728962_146739355_146739414_146740256_146740384_146741834
ENSMUSG00000063245.12_146695418_146742069_6	chr4	+	764	6	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	141.920259300778	4847	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146695417	146742069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146695586_146697966_146698060_146703608_146703692_146739355_146739414_146740256_146740384_146741834
ENSMUSG00000063245.12_146695418_146742069_7	chr4	+	715	6	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	144.968134429605	5758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146695417	146742069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146695586_146697966_146698060_146728915_146728962_146739355_146739420_146740274_146740384_146741834
ENSMUSG00000063245.12_146695418_146742069_8	chr4	+	921	6	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	103.071625581437	4434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146695417	146742069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146695757_146697966_146698060_146728915_146728985_146739355_146739414_146740256_146740384_146741834
ENSMUSG00000063245.12_146695418_146742069_9	chr4	+	898	6	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	100.036793231291	4163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146695417	146742069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146695757_146697966_146698060_146728915_146728962_146739355_146739414_146740256_146740384_146741834
ENSMUSG00000063245.12_146712246_146742069_1	chr4	+	634	5	NNC	ENSMUSG00000063245.12	novel	387	3	NA	NA	16828	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	41.4510253190437	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146712245	146742069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146712391_146728915_146728985_146739355_146739414_146740256_146740384_146741834
ENSMUSG00000063245.12_146712246_146742069_2	chr4	+	611	5	NNC	ENSMUSG00000063245.12	novel	387	3	NA	NA	16828	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	40.8748088680547	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146712245	146742069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146712391_146728915_146728962_146739355_146739414_146740256_146740384_146741834
ENSMUSG00000063273.12_51323437_51345805_1	chr3	+	492	3	ISM	ENSMUSG00000063273.12	ENSMUST00000192523.6	629	7	-280	33186	0	-4479	5prime_fragment	FALSE	canonical	3	512	junction_1	21.5	193	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGAAGCTTATGAATTGG	NA	False	NA	NA	False	NA	NA	NA	51323436	51345805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_51323798_51343635_51343721_51345759
ENSMUSG00000063273.12_51323437_51351605_1	chr3	+	1231	6	ISM	ENSMUSG00000063273.12	ENSMUST00000029303.13	6090	20	0	31801	0	293	5prime_fragment	FALSE	canonical	3	512	junction_1	37.1860188780676	284	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGCTTTTGATTTTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	51323436	51351605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326_51349485_51350156_51350292_51351218
ENSMUSG00000063273.12_51323437_51368578_1	chr3	+	2134	15	ISM	ENSMUSG00000063273.12	ENSMUST00000029303.13	6090	20	0	14828	0	-1901	5prime_fragment	FALSE	canonical	3	512	junction_1	35.8955400560901	405	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAGAAAAAAAATGCAGA	NA	False	NA	9	True	AATAAA	-34	NA	51323436	51368578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326_51349485_51350156_51350292_51351218_51351373_51354067_51354188_51355761_51355858_51355973_51356081_51358730_51358804_51363254_51363425_51364718_51364872_51366042_51366172_51367367_51367582_51368504
ENSMUSG00000063273.12_51323437_51368635_1	chr3	+	2191	15	ISM	ENSMUSG00000063273.12	ENSMUST00000029303.13	6090	20	0	14771	0	-1844	5prime_fragment	FALSE	canonical	3	512	junction_1	35.8955400560901	399	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGATGATGACGAAGAAAT	NA	False	NA	66	True	NA	NA	NA	51323436	51368635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326_51349485_51350156_51350292_51351218_51351373_51354067_51354188_51355761_51355858_51355973_51356081_51358730_51358804_51363254_51363425_51364718_51364872_51366042_51366172_51367367_51367582_51368504
ENSMUSG00000063275.16_14031642_14060831_2	chr2	-	869	5	NNC	ENSMUSG00000063275.16	novel	871	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	42.8018691180654	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTGCATTGTTTCTTGA	NA	False	NA	-2	True	AATAAA	-19	NA	14060831	14031641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_14031818_14040589_14040769_14049593_14049683_14049931_14050067_14060541
ENSMUSG00000063281.10_24122689_24136087_1	chr18	+	694	3	FSM	ENSMUSG00000063281.10	ENSMUST00000074941.8	3040	3	0	2346	0	-2346	multi-exon	FALSE	canonical	3	128	junction_1	18.5	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCAGACCTTATTAAACAT	1059	False	NA	NA	False	NA	NA	NA	24122688	24136087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_24122789_24123234_24123448_24135706
ENSMUSG00000063281.10_24122689_24137787_1	chr18	+	2394	3	FSM	ENSMUSG00000063281.10	ENSMUST00000074941.8	3040	3	0	646	0	-646	multi-exon	FALSE	canonical	3	128	junction_1	18.5	643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTCTCTTGCATCGTT	1059	False	NA	45	True	NA	NA	NA	24122688	24137787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_24122789_24123234_24123448_24135706
ENSMUSG00000063316.14_101333264_101336355_1	chr11	+	467	5	NNC	ENSMUSG00000063316.14	novel	614	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	5099.537577075	231352	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	2381	False	NA	62	True	ATTAAA	-18	NA	101333263	101336355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_101333283_101333548_101333632_101334326_101334497_101336045_101336157_101336271
ENSMUSG00000063316.14_101333264_101336355_2	chr11	+	474	5	FSM	ENSMUSG00000063316.14	ENSMUST00000077856.13	614	5	140	0	0	0	multi-exon	FALSE	canonical	3	8302	junction_4	1985.8892844265	303872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	2381	False	NA	62	True	ATTAAA	-18	NA	101333263	101336355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101333283_101333548_101333632_101334326_101334497_101336045_101336157_101336264
ENSMUSG00000063320.12_82455685_82459041_1	chr10	-	598	3	FSM	ENSMUSG00000063320.12	ENSMUST00000183363.2	406	3	-17	-175	-11	0	multi-exon	FALSE	canonical	3	187	junction_2	131	4183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTACTATACATTCTTGG	NA	False	NA	0	True	NA	NA	NA	82459041	82455684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_82456052_82458541_82458659_82458927
ENSMUSG00000063320.12_82455860_82458971_1	chr10	-	482	3	FSM	ENSMUSG00000063320.12	ENSMUST00000079648.12	716	3	59	175	0	0	multi-exon	FALSE	canonical	3	302	junction_2	73.5	2980	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTAGGGGGCTCAATGGC	NA	False	NA	0	True	AGTAAA	-20	NA	82458971	82455859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_82456052_82458541_82458659_82458798
ENSMUSG00000063354.8_76496583_76497141_1	chr15	-	468	2	ISM	ENSMUSG00000063354.8	ENSMUST00000073428.7	2063	11	3907	0	1365	0	3prime_fragment	FALSE	canonical	3	453	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	NA	False	NA	-2	True	AATAAA	-21	NA	76497141	76496582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_76496864_76496954
ENSMUSG00000063354.8_76496583_76501048_1	chr15	-	1741	10	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	43	junction_9	124.308258816044	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8666	False	NA	-2	True	AATAAA	-21	NA	76501048	76496582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76500772
ENSMUSG00000063362.14_22550738_22558308_1	chr8	+	1624	4	FSM	ENSMUSG00000063362.14	ENSMUST00000072572.13	4960	4	1	3335	0	-1587	multi-exon	FALSE	canonical	3	45	junction_2	9.93310961716756	229	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCCTAAATTTATTCTT	NA	False	NA	NA	False	NA	NA	NA	22550737	22558308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_22550787_22551901_22552133_22555015_22555948_22557896
ENSMUSG00000063383.6_22363340_22384920_1	chr17	-	2621	5	FSM	ENSMUSG00000063383.6	ENSMUST00000080249.6	2872	5	251	0	251	0	multi-exon	FALSE	canonical	3	22	junction_1	1.11803398874989	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTTGGCTGTTTCCATT	NA	False	NA	NA	False	NA	NA	NA	22384920	22363339	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_22365516_22366369_22366497_22369015_22369064_22382167_22382317_22384799
ENSMUSG00000063406.12_108208606_108255109_1	chr5	-	2204	15	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	25287	45626	intron_retention	FALSE	non_canonical	0	0	junction_1	0	841	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATGACTATTACAAGAAG	NA	False	NA	NA	False	NA	NA	NA	108255109	108208605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_108208730_108228690_108228894_108229002_108229089_108234867_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUSG00000063406.12_108208606_108255371_2	chr5	-	2466	15	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	25025	45626	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1121	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATGACTATTACAAGAAG	NA	False	NA	NA	False	NA	NA	NA	108255371	108208605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_108208730_108228690_108228894_108229002_108229089_108234867_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUSG00000063406.12_108208606_108256136_1	chr5	-	3231	15	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	24260	45626	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1397	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATGACTATTACAAGAAG	NA	False	NA	NA	False	NA	NA	NA	108256136	108208605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_108208730_108228690_108228894_108229002_108229089_108234867_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUSG00000063406.12_108213583_108255371_1	chr5	-	2590	15	NIC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	25025	40649	intron_retention	FALSE	non_canonical	0	0	junction_1	0	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCGGTGCATTCTGGGAGC	NA	False	NA	NA	False	NA	NA	NA	108255371	108213582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_108213832_108228690_108228894_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUSG00000063406.12_108271837_108280415_1	chr5	-	1385	4	FSM	ENSMUSG00000063406.12	ENSMUST00000002837.11	3800	4	71	2344	0	-910	multi-exon	FALSE	canonical	3	224	junction_1	14.1656862405839	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAATAAACAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108280415	108271836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_108272626_108273766_108273951_108277883_108277982_108280101
ENSMUSG00000063410.9_121523755_121529519_1	chr14	-	1150	2	ISM	ENSMUSG00000063410.9	ENSMUST00000079817.8	2676	11	87227	0	11368	0	3prime_fragment	FALSE	canonical	3	297	junction_1	0	351	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCATTTTGCATACTATTC	NA	False	NA	-11	True	AATAAA	-12	NA	121529519	121523754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_121524777_121529391
ENSMUSG00000063445.15_4529181_4536973_1	chr16	-	1182	5	FSM	ENSMUSG00000063445.15	ENSMUST00000120056.8	2440	5	0	1258	0	0	multi-exon	FALSE	canonical	3	167	junction_4	12.1243556529821	1408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTTTCCCAAAAGAAAAGG	4843	False	NA	-6	True	AATAAA	-18	NA	4536973	4529180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_4529468_4531503_4531695_4532280_4532531_4534160_4534400_4536758
ENSMUSG00000063445.15_4531275_4536973_1	chr16	-	1124	4	ISM	ENSMUSG00000063445.15	ENSMUST00000074970.8	1155	5	3	1116	0	1098	5prime_fragment	FALSE	canonical	3	167	junction_3	9.79795897113271	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGGCTAGGTTTTTTTG	4843	False	NA	NA	False	NA	NA	NA	4536973	4531274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_4531695_4532280_4532531_4534160_4534400_4536758
ENSMUSG00000063457.15_80128287_80129948_1	chr10	+	634	4	NNC	ENSMUSG00000063457.15	novel	500	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	409	junction_1	3639.28063709788	45213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGGTTTTTGTTTTTTT	6342	False	NA	30	True	AATAAA	-21	NA	80128286	80129948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80128452_80128608_80128695_80129475_80129711_80129800
ENSMUSG00000063457.15_80128287_80129948_2	chr10	+	791	3	FSM	ENSMUSG00000063457.15	ENSMUST00000062674.7	572	3	-192	-27	0	0	multi-exon	FALSE	canonical	3	7729	junction_2	373	45518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGGTTTTTGTTTTTTT	6342	False	NA	30	True	AATAAA	-21	NA	80128286	80129948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80128695_80129475_80129711_80129800
ENSMUSG00000063480.9_81925538_81931746_1	chr15	-	1212	3	FSM	ENSMUSG00000063480.9	ENSMUST00000080622.9	2077	3	53	812	-10	141	multi-exon	FALSE	canonical	3	3045	junction_2	110	20148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGCAGCTGTGCCTGATT	4959	False	NA	-19	True	AATAAA	-28	NA	81931746	81925537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_81926570_81928097_81928219_81931687
ENSMUSG00000063480.9_81926200_81931746_1	chr15	-	550	3	FSM	ENSMUSG00000063480.9	ENSMUST00000080622.9	2077	3	53	1474	-10	-265	multi-exon	FALSE	canonical	3	3045	junction_2	110	12632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTTATATTTTTATTTTT	4959	False	NA	-1	True	NA	NA	NA	81931746	81926199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_81926570_81928097_81928219_81931687
ENSMUSG00000063511.12_45025887_45045116_1	chr7	-	1579	10	NNC	ENSMUSG00000063511.12	novel	3035	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	468.433823409006	5675	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTGGGCATGTGATGTC	9091	False	NA	-10	True	AATAAA	-15	NA	45045116	45025886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_45026607_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
ENSMUSG00000063511.12_45025887_45045116_2	chr7	-	1669	10	NNC	ENSMUSG00000063511.12	novel	3035	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	471.580505152096	6348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTGGGCATGTGATGTC	9091	False	NA	-10	True	AATAAA	-15	NA	45045116	45025886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044230_45044928
ENSMUSG00000063511.12_45025887_45045116_3	chr7	-	1755	11	NIC	ENSMUSG00000063511.12	novel	3035	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_10	573.136842298591	6290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTGGGCATGTGATGTC	9091	False	NA	-10	True	AATAAA	-15	NA	45045116	45025886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044516_45044597_45044932
ENSMUSG00000063511.12_45026570_45045116_1	chr7	-	992	10	FSM	ENSMUSG00000063511.12	ENSMUST00000074575.11	1735	10	50	693	0	0	multi-exon	FALSE	canonical	3	1192	junction_9	143.840189098875	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGAGTCGAGACAAGGATGA	9091	False	NA	48	True	NA	NA	NA	45045116	45026569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
ENSMUSG00000063524.14_150321178_150333330_1	chr4	+	1783	12	NIC	ENSMUSG00000063524.14	novel	1902	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	4918.82187063542	1826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	-1	True	AATAAA	-16	NA	150321177	150333330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_150321329_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
ENSMUSG00000063524.14_150321697_150333330_1	chr4	+	1879	13	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_2	5488.47514494387	2789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	-1	True	AATAAA	-16	NA	150321696	150333330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_150321798_150322144_150322291_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
ENSMUSG00000063524.14_150321697_150333330_2	chr4	+	1727	12	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	5183.00895568498	32618	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	-1	True	AATAAA	-16	NA	150321696	150333330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328826_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
ENSMUSG00000063524.14_150321697_150333330_3	chr4	+	1725	12	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	5191.56503099734	36831	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	-1	True	AATAAA	-16	NA	150321696	150333330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331034_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
ENSMUSG00000063524.14_150321697_150333330_4	chr4	+	1857	13	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	5492.4685681597	3027	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	-1	True	AATAAA	-16	NA	150321696	150333330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_150321798_150322471_150322596_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
ENSMUSG00000063524.14_150322157_150333330_1	chr4	+	2071	12	NNC	ENSMUSG00000063524.14	novel	1902	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	4912.18996456101	1794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	-1	True	AATAAA	-16	NA	150322156	150333330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_150322596_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
ENSMUSG00000063524.14_150322362_150333330_1	chr4	+	1866	12	NNC	ENSMUSG00000063524.14	novel	1902	8	NA	NA	205	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	4912.18996456101	1766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	-1	True	AATAAA	-16	NA	150322361	150333330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_150322596_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
ENSMUSG00000063576.13_46985476_46991729_1	chr17	-	1633	10	NIC	ENSMUSG00000063576.13	novel	2100	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_9	133.12214756696	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	False	NA	0	True	TATAAA	-17	NA	46991729	46985475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46991627
ENSMUSG00000063576.13_46985476_46991729_2	chr17	-	1999	12	FSM	ENSMUSG00000063576.13	ENSMUST00000071841.7	2100	12	101	0	0	0	multi-exon	FALSE	canonical	3	322	junction_11	42.5343808432544	646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	False	NA	0	True	TATAAA	-17	NA	46991729	46985475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
ENSMUSG00000063576.13_46985476_46991729_3	chr17	-	1992	12	NNC	ENSMUSG00000063576.13	novel	2100	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_11	124.501452080881	647	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	False	NA	0	True	TATAAA	-17	NA	46991729	46985475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990114_46991627
ENSMUSG00000063576.13_46985476_46991840_1	chr17	-	1744	10	NIC	ENSMUSG00000063576.13	novel	1954	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_9	133.12214756696	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	False	NA	0	True	TATAAA	-17	NA	46991840	46985475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46991627
ENSMUSG00000063646.19_37185679_37249396_1	chr5	+	1454	3	FSM	ENSMUSG00000063646.19	ENSMUST00000173836.8	849	3	0	-605	0	23	multi-exon	FALSE	canonical	3	99	junction_1	10.5	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATTTTATTTAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	37185678	37249396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_37185944_37242579_37242843_37248470
ENSMUSG00000063646.19_37185679_37282643_1	chr5	+	2529	13	NIC	ENSMUSG00000063646.19	novel	2496	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	99	junction_1	26.6327909832138	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	NA	False	NA	17	True	AATAAA	-20	NA	37185678	37282643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_37185944_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
ENSMUSG00000063646.19_37245557_37249396_1	chr5	+	1020	2	NNC	ENSMUSG00000063646.19	novel	849	3	NA	NA	2843	23	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	0	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATTTTATTTAAAAAGT	3224	False	NA	NA	False	NA	NA	NA	37245556	37249396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_37245651_37248470
ENSMUSG00000063646.19_37248424_37264885_1	chr5	+	1443	6	ISM	ENSMUSG00000063646.19	ENSMUST00000121010.9	2496	20	5710	40460	0	2666	internal_fragment	FALSE	canonical	3	147	junction_1	12.1556571192182	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACATAGATACTCAGG	2480	False	NA	NA	False	NA	NA	NA	37248423	37264885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602
ENSMUSG00000063646.19_37278199_37282643_1	chr5	+	656	3	ISM	ENSMUSG00000063646.19	ENSMUST00000212047.2	1191	6	7328	0	-2120	0	3prime_fragment	FALSE	canonical	3	187	junction_1	1	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	1912	False	NA	17	True	AATAAA	-20	NA	37278198	37282643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_37278369_37280623_37280687_37282220
ENSMUSG00000063694.6_50541412_50543518_1	chr6	-	1254	3	FSM	ENSMUSG00000063694.6	ENSMUST00000161401.2	3123	3	0	1869	0	805	multi-exon	FALSE	canonical	3	4909	junction_2	335	56552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGATTGTGCTTTGTT	NA	False	NA	-8	True	ATTAAA	-18	NA	50543518	50541411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_50542366_50542471_50542649_50543395
ENSMUSG00000063694.6_50541656_50543518_1	chr6	-	1010	3	FSM	ENSMUSG00000063694.6	ENSMUST00000161401.2	3123	3	0	2113	0	561	multi-exon	FALSE	canonical	3	4909	junction_2	335	53788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTATAGTTGATCTGCAAA	NA	False	NA	NA	False	AATAAA	-16	NA	50543518	50541655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_50542366_50542471_50542649_50543395
ENSMUSG00000063694.6_50542070_50543518_1	chr6	-	596	3	FSM	ENSMUSG00000063694.6	ENSMUST00000161401.2	3123	3	0	2527	0	147	multi-exon	FALSE	canonical	3	4909	junction_2	335	43998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGTACGGTCTTTATTAA	NA	False	NA	NA	False	AGTAAA	-17	NA	50543518	50542069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_50542366_50542471_50542649_50543395
ENSMUSG00000063698.10_60827196_60849865_1	chr19	-	1172	13	NIC	ENSMUSG00000063698.10	novel	2923	15	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_11	6.73094016876956	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGAAAGAAATCATCAAAAG	NA	False	NA	NA	False	AATAAA	-20	NA	60849865	60827195	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_60827489_60830556_60830675_60832646_60832733_60839396_60839513_60840449_60840529_60842124_60842191_60842301_60842359_60842444_60842499_60844264_60844291_60845647_60845703_60845787_60845815_60848466_60848533_60849736
ENSMUSG00000063714.16_72809860_72818951_1	chr2	+	414	3	NNC	ENSMUSG00000063714.16	novel	583	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	98	534	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAATCTCCTGCAAGCTTG	NA	False	NA	20	True	NA	NA	NA	72809859	72818951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_72809933_72817871_72817977_72818715
ENSMUSG00000063785.13_47345739_47355842_1	chrX	+	1169	7	FSM	ENSMUSG00000063785.13	ENSMUST00000125966.8	2138	7	-35	1004	0	-1004	multi-exon	FALSE	canonical	3	18	junction_6	135.426999605774	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTAAGGTTTTTTTTTCTT	NA	False	NA	NA	False	GATAAA	-8	NA	47345738	47355842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47355291
ENSMUSG00000063785.13_47345774_47352509_1	chrX	+	583	6	ISM	ENSMUSG00000063785.13	ENSMUST00000125966.8	2138	7	0	4337	0	-4337	5prime_fragment	FALSE	canonical	3	345	junction_4	29.36256119619	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAGTGCAACACAATGAGA	NA	False	NA	NA	False	NA	NA	NA	47345773	47352509	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353
ENSMUSG00000063785.13_47345774_47371330_1	chrX	+	1389	10	NIC	ENSMUSG00000063785.13	novel	2507	15	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_7	130.820015835536	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGACTACCTTCTGTATTA	NA	False	NA	20	True	AATAAA	-24	NA	47345773	47371330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47367243_47367438_47367544_47367645_47370938
ENSMUSG00000063800.6_108422070_108436325_1	chr4	-	1278	9	NIC	ENSMUSG00000063800.6	novel	1516	10	NA	NA	208	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	182.781973947105	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTCTGGCTTTTTGTTT	NA	False	NA	-11	True	ATTAAA	-17	NA	108436325	108422069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_108422465_108424101_108424151_108424619_108424718_108425554_108425668_108427352_108427464_108430002_108430089_108432565_108432688_108434125_108434286_108436181
ENSMUSG00000063800.6_108422070_108436533_1	chr4	-	1486	9	NIC	ENSMUSG00000063800.6	novel	1516	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	182.781973947105	965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTCTGGCTTTTTGTTT	NA	False	NA	-11	True	ATTAAA	-17	NA	108436533	108422069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_108422465_108424101_108424151_108424619_108424718_108425554_108425668_108427352_108427464_108430002_108430089_108432565_108432688_108434125_108434286_108436181
ENSMUSG00000063801.8_79529511_79570389_1	chr7	-	1367	6	FSM	ENSMUSG00000063801.8	ENSMUST00000075657.8	5813	6	8	4438	8	2748	multi-exon	FALSE	canonical	3	250	junction_1	30.5653398476117	1195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAAGGTTCAGTGCTGTG	NA	False	NA	-6	True	AATACA	-15	NA	79570389	79529510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_79530361_79532213_79532322_79559582_79559655_79564894_79565007_79565763_79565856_79570256
ENSMUSG00000063802.6_4663520_4687980_1	chr7	-	1506	8	FSM	ENSMUSG00000063802.6	ENSMUST00000079970.6	1593	8	87	0	0	0	multi-exon	FALSE	canonical	3	115	junction_7	148.934720667842	2898	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTATGCTGTCTTGCATT	NA	False	NA	-7	True	AATAAA	-16	NA	4687980	4663519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687569_4687892
ENSMUSG00000063802.6_4663520_4687980_2	chr7	-	1419	8	NIC	ENSMUSG00000063802.6	novel	1593	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_7	161.654708864169	2474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTATGCTGTCTTGCATT	NA	False	NA	-7	True	AATAAA	-16	NA	4687980	4663519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687482_4687892
ENSMUSG00000063838.7_4154259_4167538_1	chr7	-	712	3	FSM	ENSMUSG00000063838.7	ENSMUST00000143825.2	421	3	0	-291	0	0	multi-exon	FALSE	canonical	1	2	junction_1	67.5	1064	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTCTATTCACTTTACGC	NA	False	NA	1	True	CATAAA	-22	NA	4167538	4154258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4154787_4167083_4167187_4167457
ENSMUSG00000063838.7_4154259_4167538_2	chr7	-	704	3	FSM	ENSMUSG00000063838.7	ENSMUST00000076831.7	1025	3	321	0	0	0	multi-exon	FALSE	canonical	3	137	junction_2	5.5	1142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTCTATTCACTTTACGC	NA	False	NA	1	True	CATAAA	-22	NA	4167538	4154258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4154787_4167091_4167187_4167457
ENSMUSG00000063838.7_4154259_4167704_1	chr7	-	870	3	FSM	ENSMUSG00000063838.7	ENSMUST00000076831.7	1025	3	155	0	155	0	multi-exon	FALSE	canonical	3	137	junction_2	5.5	1851	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTCTATTCACTTTACGC	NA	False	NA	1	True	CATAAA	-22	NA	4167704	4154258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4154787_4167091_4167187_4167457
ENSMUSG00000063849.7_57321244_57347383_1	chr9	-	1440	7	FSM	ENSMUSG00000063849.7	ENSMUST00000085709.6	2744	7	-4	1308	-3	0	multi-exon	FALSE	canonical	3	27	junction_2	42.49607825043	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGTGTCCTTCTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	57347383	57321243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_57322010_57322368_57322538_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57347352
ENSMUSG00000063870.13_125073125_125077859_1	chr6	+	519	4	ISM	ENSMUSG00000063870.13	ENSMUST00000112390.8	6537	39	0	29695	0	376	5prime_fragment	FALSE	canonical	3	54	junction_3	70.258253765819	123	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGAAAAAGAAGCTCG	1789	False	NA	NA	False	NA	NA	NA	125073124	125077859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077740
ENSMUSG00000063870.13_125073125_125077859_2	chr6	+	498	4	ISM	ENSMUSG00000063870.13	ENSMUST00000112392.8	6652	39	181	29689	0	376	5prime_fragment	FALSE	canonical	3	200	junction_3	2.16024689946929	166	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGAAAAAGAAGCTCG	1789	False	NA	NA	False	NA	NA	NA	125073124	125077859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077761
ENSMUSG00000063870.13_125073125_125079261_1	chr6	+	1220	8	ISM	ENSMUSG00000063870.13	ENSMUST00000112392.8	6652	39	181	28287	0	1778	5prime_fragment	FALSE	canonical	3	200	junction_3	15.8384703446117	249	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTTTCTTTTCTGTACT	1789	False	NA	NA	False	AAAAAG	-11	NA	125073124	125079261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077761_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125
ENSMUSG00000063870.13_125099803_125107548_1	chr6	+	1320	5	ISM	ENSMUSG00000063870.13	ENSMUST00000112390.8	6537	39	26678	6	3073	0	3prime_fragment	FALSE	canonical	3	491	junction_1	33.2565782966318	99	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTAGTGATCTGGTTCTG	2709	False	NA	8	True	AATAAA	-12	NA	125099802	125107548	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
ENSMUSG00000063882.13_115924162_115932231_1	chr4	-	494	3	NNC	ENSMUSG00000063882.13	novel	579	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7694	False	NA	-7	True	AATAAA	-17	NA	115932231	115924161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_115924358_115927055_115927222_115932099
ENSMUSG00000063882.13_115924162_115932231_2	chr4	-	498	4	NNC	ENSMUSG00000063882.13	novel	579	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	479.418397644479	19041	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7694	False	NA	-7	True	AATAAA	-17	NA	115932231	115924161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_115924358_115927059_115927222_115927933_115927955_115932112
ENSMUSG00000063882.13_115924162_115932231_3	chr4	-	489	3	NIC	ENSMUSG00000063882.13	novel	579	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	536	5892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7694	False	NA	-7	True	AATAAA	-17	NA	115932231	115924161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_115924370_115927059_115927222_115932112
ENSMUSG00000063882.13_115924162_115932231_4	chr4	-	502	3	NNC	ENSMUSG00000063882.13	novel	579	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	536	10079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7694	False	NA	-7	True	AATAAA	-17	NA	115932231	115924161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_115924370_115927059_115927222_115932099
ENSMUSG00000063882.13_115924162_115932231_5	chr4	-	502	4	NNC	ENSMUSG00000063882.13	novel	579	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	479.418397644479	22216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7694	False	NA	-7	True	AATAAA	-17	NA	115932231	115924161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_115924358_115927055_115927222_115927933_115927955_115932112
ENSMUSG00000063884.7_71857624_71885746_1	chr6	-	2542	23	NIC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	264.585833375751	1262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTTTGTAAGCGTGTAC	3036	False	NA	-3	True	AATAAA	-26	NA	71885746	71857623	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866354_71866577_71866671_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
ENSMUSG00000063884.7_71858061_71885746_3	chr6	-	2156	24	FSM	ENSMUSG00000063884.7	ENSMUST00000082094.5	2581	24	-12	437	-12	-434	multi-exon	FALSE	canonical	0	0	junction_9	208.34992196086	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAGCTCTGTATTGTATT	3036	False	NA	NA	False	AATAAA	-23	NA	71885746	71858060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866354_71866577_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
ENSMUSG00000063884.7_71877882_71885746_1	chr6	-	861	7	ISM	ENSMUSG00000063884.7	ENSMUST00000205761.2	2680	17	-18	13644	-12	1789	5prime_fragment	FALSE	canonical	3	891	junction_1	58.6564858590534	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTGTGAGTGCTTTG	3036	False	NA	NA	False	AATAAA	-20	NA	71885746	71877881	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
ENSMUSG00000063888.8_47086027_47093582_1	chr17	-	1406	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	0	-1194	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	827.181895890432	7838	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTGTGTATACCTTTA	NA	False	NA	-3	True	NA	NA	NA	47093582	47086026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092812_47093544
ENSMUSG00000063888.8_47086027_47093582_2	chr17	-	1405	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	0	-1194	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	841.552335469003	5750	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTGTGTATACCTTTA	NA	False	NA	-3	True	NA	NA	NA	47093582	47086026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091471_47092708_47092818_47093544
ENSMUSG00000063888.8_47086027_47093582_3	chr17	-	1410	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	0	-1194	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1085.12617033945	4595	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTGTGTATACCTTTA	NA	False	NA	-3	True	NA	NA	NA	47093582	47086026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_47086663_47088972_47089198_47089335_47089446_47090210_47090349_47091316_47091471_47092708_47092818_47093544
ENSMUSG00000063888.8_47086027_47093582_4	chr17	-	1412	7	FSM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	0	1194	0	-1194	multi-exon	FALSE	canonical	3	1943	junction_1	138.303309994937	10809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTGTGTATACCTTTA	NA	False	NA	-3	True	NA	NA	NA	47093582	47086026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
ENSMUSG00000063888.8_47086027_47093582_5	chr17	-	1411	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	0	-1194	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1064.5303215764	5933	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTGTGTATACCTTTA	NA	False	NA	-3	True	NA	NA	NA	47093582	47086026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_47086663_47088972_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092812_47093544
ENSMUSG00000063888.8_47086425_47093582_1	chr17	-	1008	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	0	-1592	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	827.181895890432	2176	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCCTTCTATCTTGGTG	NA	False	NA	-11	True	NA	NA	NA	47093582	47086424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092812_47093544
ENSMUSG00000063888.8_47086425_47093582_2	chr17	-	1007	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	0	-1592	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	841.552335469003	1511	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCCTTCTATCTTGGTG	NA	False	NA	-11	True	NA	NA	NA	47093582	47086424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091471_47092708_47092818_47093544
ENSMUSG00000063888.8_47086425_47093582_3	chr17	-	1012	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	0	-1592	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1085.12617033945	1484	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCCTTCTATCTTGGTG	NA	False	NA	-11	True	NA	NA	NA	47093582	47086424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_47086663_47088972_47089198_47089335_47089446_47090210_47090349_47091316_47091471_47092708_47092818_47093544
ENSMUSG00000063888.8_47086425_47093582_4	chr17	-	1013	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	0	-1592	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1064.5303215764	1540	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCCTTCTATCTTGGTG	NA	False	NA	-11	True	NA	NA	NA	47093582	47086424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_47086663_47088972_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092812_47093544
ENSMUSG00000063889.17_3267514_3337547_1	chr18	-	662	4	NIC	ENSMUSG00000063889.17	novel	2662	10	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_2	34.3737626039914	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTATGGCTTTTTCCTTT	22	True	NA	NA	False	AATATA	-11	NA	3337547	3267513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_-_3267733_3273421_3273579_3325360_3325479_3337379
ENSMUSG00000063889.17_3294482_3337547_1	chr18	-	1082	4	FSM	ENSMUSG00000063889.17	ENSMUST00000149803.8	1422	4	42	298	-14	0	multi-exon	FALSE	canonical	3	52	junction_2	16.5797734872612	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTAGTCTTGTGCATTT	22	True	NA	-6	True	AATAAA	-12	NA	3337547	3294481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_3295183_3295321_3295417_3325360_3325479_3337379
ENSMUSG00000063889.17_3294639_3337547_1	chr18	-	925	4	FSM	ENSMUSG00000063889.17	ENSMUST00000149803.8	1422	4	42	455	-14	-157	multi-exon	FALSE	canonical	3	52	junction_2	16.5797734872612	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGTTTTAAATGTACTT	22	True	NA	NA	False	AGTAAA	-13	NA	3337547	3294638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_3295183_3295321_3295417_3325360_3325479_3337379
ENSMUSG00000063919.12_116571330_116600638_1	chr5	-	422	5	NNC	ENSMUSG00000063919.12	novel	6555	5	NA	NA	5009	6004	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	222	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATCCAGAGTCTCTAG	NA	False	NA	NA	False	NA	NA	NA	116600638	116571329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_116571361_116571595_116571654_116577427_116577496_116599782_116599863_116600453
ENSMUSG00000063931.15_34668574_34744134_1	chr7	+	1376	9	NNC	ENSMUSG00000063931.15	novel	705	6	NA	NA	-134	1	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	118.290954852854	231	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCTGCCCATCTTCCTCT	8586	False	NA	15	True	AATAAA	-20	NA	34668573	34744134	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_34668675_34668929_34669006_34671081_34671129_34720389_34720459_34721117_34721196_34730767_34730917_34740095_34740281_34743114_34743307_34743655
ENSMUSG00000063931.15_34668708_34744132_1	chr7	+	1495	8	ISM	ENSMUSG00000063931.15	ENSMUST00000075068.14	1881	15	56904	1	0	0	3prime_fragment	FALSE	canonical	3	314	junction_5	28.3541740079564	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTTCTGCCCATCTTCCT	8720	False	NA	13	True	AATAAA	-18	NA	34668707	34744132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_34669006_34671081_34671129_34720389_34720459_34721117_34721196_34730767_34730917_34740095_34740281_34743114_34743307_34743655
ENSMUSG00000064030.16_128583758_128602432_1	chr10	+	1309	3	NNC	ENSMUSG00000064030.16	novel	1158	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_2	127.5	1177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGTCAGGCTTTGGCTC	NA	False	NA	NA	False	AATAAA	-15	NA	128583757	128602432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_128583868_128601015_128601261_128601478
ENSMUSG00000064032.3_10176502_10181273_1	chr19	+	1086	3	NNC	ENSMUSG00000064032.3	novel	3332	2	NA	NA	-51	1525	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	136	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCCAAAGCCCGCGCTC	NA	False	NA	NA	False	NA	NA	NA	10176501	10181273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_10177234_10178329_10178462_10181051
ENSMUSG00000064037.14_31652097_31668761_1	chr5	+	1645	14	FSM	ENSMUSG00000064037.14	ENSMUST00000076949.13	3144	14	12	1487	0	558	multi-exon	FALSE	canonical	3	859	junction_7	68.5179542833234	2807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGGTAAGCTTTCCTG	NA	False	NA	26	True	GATAAA	-15	NA	31652096	31668761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
ENSMUSG00000064037.14_31652097_31668761_2	chr5	+	1641	13	NNC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	0	558	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	285.059447990922	2769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGGTAAGCTTTCCTG	NA	False	NA	26	True	GATAAA	-15	NA	31652096	31668761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655785_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
ENSMUSG00000064068.16_89116394_89121214_1	chr3	-	1085	8	FSM	ENSMUSG00000064068.16	ENSMUST00000173477.8	892	8	-67	-126	0	0	multi-exon	FALSE	canonical	1	38	junction_5	268.396143407312	5945	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGATCAAAGAATCCCTT	NA	False	NA	-22	True	AATAAA	-15	NA	89121214	89116393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89116729_89116811_89116967_89117413_89117491_89117572_89117756_89117890_89117981_89119989_89120070_89120183_89120254_89121119
ENSMUSG00000064090.15_26337202_26421430_1	chr11	-	1060	13	NIC	ENSMUSG00000064090.15	novel	1889	13	NA	NA	77935	84120	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	94	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGCCGCACATGCGCAGT	NA	False	NA	NA	False	NA	NA	NA	26421430	26337201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
ENSMUSG00000064090.15_26337202_26421430_2	chr11	-	933	10	NIC	ENSMUSG00000064090.15	novel	1642	12	NA	NA	77935	84120	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGCCGCACATGCGCAGT	NA	False	NA	NA	False	NA	NA	NA	26421430	26337201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_26337311_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
ENSMUSG00000064090.15_26337202_26421430_3	chr11	-	1281	14	NIC	ENSMUSG00000064090.15	novel	1889	13	NA	NA	77935	84120	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	115	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGCCGCACATGCGCAGT	NA	False	NA	NA	False	NA	NA	NA	26421430	26337201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420806_26420949_26421324
ENSMUSG00000064090.15_26337202_26421430_5	chr11	-	1186	14	NNC	ENSMUSG00000064090.15	novel	1889	13	NA	NA	77935	84120	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	124	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGCCGCACATGCGCAGT	NA	False	NA	NA	False	NA	NA	NA	26421430	26337201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_26337286_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
ENSMUSG00000064090.15_26337202_26421878_3	chr11	-	1729	14	NIC	ENSMUSG00000064090.15	novel	1889	13	NA	NA	77487	84120	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	753	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGCCGCACATGCGCAGT	NA	False	NA	NA	False	NA	NA	NA	26421878	26337201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420806_26420949_26421324
ENSMUSG00000064090.15_26376876_26421424_1	chr11	-	826	9	NNC	ENSMUSG00000064090.15	novel	1642	12	NA	NA	77941	44446	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1025	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGGAAGGTGGCCGGCTG	NA	False	NA	NA	False	NA	NA	NA	26421424	26376875	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_26376981_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
ENSMUSG00000064105.14_46845368_46866801_1	chr19	+	1090	6	ISM	ENSMUSG00000064105.14	ENSMUST00000099373.12	4955	8	95333	1830	-8731	0	3prime_fragment	FALSE	canonical	0	0	junction_1	43.0562422884301	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGATCATGTTTTTGTTT	NA	False	NA	29	True	TTTAAA	-25	NA	46845367	46866801	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_46845413_46847381_46847552_46856976_46857071_46860094_46860161_46865646_46865832_46866271
ENSMUSG00000064138.15_77856829_78154682_1	chr13	+	1240	9	ISM	ENSMUSG00000064138.15	ENSMUST00000091459.12	3892	10	20	159672	0	54459	5prime_fragment	FALSE	canonical	3	89	junction_7	9.17877987534291	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCAAACTGTTTATAATAT	NA	False	NA	NA	False	ATTAAA	-16	NA	77856828	78154682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_77856973_77907546_77907649_77909956_77910058_77973441_77973508_77982628_77982821_78050772_78050995_78100103_78100224_78147704_78147822_78154506
ENSMUSG00000064141.15_120792128_120808896_1	chr4	-	951	4	NNC	ENSMUSG00000064141.15	novel	2362	6	NA	NA	0	-3624	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.9241115365405	48	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACATCCTTGTTTGCTTGCT	6836	False	NA	NA	False	NA	NA	NA	120808896	120792127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_120792391_120804563_120804767_120806528_120806758_120808640
ENSMUSG00000064145.13_108481885_108526568_1	chr9	-	2169	16	FSM	ENSMUSG00000064145.13	ENSMUST00000013338.14	3924	16	11	1744	0	0	multi-exon	FALSE	canonical	3	517	junction_5	114.47891605978	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTCACCCTTTAGCTA	NA	False	NA	-24	True	AATAAA	-11	NA	108526568	108481884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108526427
ENSMUSG00000064179.14_4507662_4511073_1	chr7	-	657	4	FSM	ENSMUSG00000064179.14	ENSMUST00000086502.5	485	4	-49	-123	-49	0	multi-exon	FALSE	canonical	3	16	junction_3	18.0800688297608	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTTCTTCAGGGTTGTT	7281	False	NA	-11	True	AATAAA	-19	NA	4511073	4507661	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4510686
ENSMUSG00000064194.11_42827012_42838930_1	chr7	+	509	4	FSM	ENSMUSG00000064194.11	ENSMUST00000202535.4	3112	4	0	2603	0	4	multi-exon	FALSE	canonical	3	311	junction_1	65.2226954364813	1035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGCTATCTTCGAATGCA	NA	False	NA	NA	False	NA	NA	NA	42827011	42838930	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725
ENSMUSG00000064194.11_42827012_42839078_1	chr7	+	694	5	NNC	ENSMUSG00000064194.11	novel	578	5	NA	NA	0	0	intron_retention	TRUE	non_canonical	0	0	junction_4	196.935268552893	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTAAAGCCTTTTTACAT	NA	False	NA	NA	False	NA	NA	NA	42827011	42839078	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838466_42838749_42838970
ENSMUSG00000064194.11_42827012_42839103_1	chr7	+	682	4	FSM	ENSMUSG00000064194.11	ENSMUST00000202535.4	3112	4	0	2430	0	25	multi-exon	FALSE	canonical	3	311	junction_1	65.2226954364813	1094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATCTTAGAATTCATGAAA	NA	False	NA	NA	False	NA	NA	NA	42827011	42839103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725
ENSMUSG00000064194.11_42827012_42839352_1	chr7	+	968	5	NNC	ENSMUSG00000064194.11	novel	578	5	NA	NA	0	274	intron_retention	FALSE	non_canonical	0	0	junction_4	196.935268552893	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTAATCTCCGAATACATG	NA	False	NA	10	True	NA	NA	NA	42827011	42839352	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838466_42838749_42838970
ENSMUSG00000064194.11_42827012_42839352_2	chr7	+	709	4	NNC	ENSMUSG00000064194.11	novel	3112	4	NA	NA	0	274	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	195.192782198068	1538	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTAATCTCCGAATACATG	NA	False	NA	10	True	NA	NA	NA	42827011	42839352	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838947
ENSMUSG00000064194.11_42827012_42839352_3	chr7	+	700	4	NNC	ENSMUSG00000064194.11	novel	3112	4	NA	NA	0	274	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	195.192782198068	1316	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTAATCTCCGAATACATG	NA	False	NA	10	True	NA	NA	NA	42827011	42839352	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838956
ENSMUSG00000064194.11_42827012_42839352_4	chr7	+	931	4	FSM	ENSMUSG00000064194.11	ENSMUST00000202535.4	3112	4	0	2181	0	274	multi-exon	FALSE	canonical	3	311	junction_1	65.2226954364813	2096	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTAATCTCCGAATACATG	NA	False	NA	10	True	NA	NA	NA	42827011	42839352	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725
ENSMUSG00000064202.16_28812535_28890038_1	chr19	-	2417	12	NIC	ENSMUSG00000064202.16	novel	2638	9	NA	NA	-759	57907	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCTGGGGACCGAGCACG	NA	False	NA	NA	False	NA	NA	NA	28890038	28812534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_28812733_28856412_28856554_28870234_28870328_28871853_28871969_28873483_28873527_28874906_28875003_28878841_28879027_28880085_28880194_28882011_28882135_28882732_28882928_28886830_28886966_28889053
ENSMUSG00000064215.14_103400470_103406499_1	chr12	+	1038	6	NNC	ENSMUSG00000064215.14	novel	963	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	7.44580418759451	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCATTGTTCCCCTTTCT	6586	False	NA	6	True	AATAAA	-20	NA	103400469	103406499	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_103400610_103401680_103401833_103402821_103402942_103403648_103403826_103405659_103405822_103406212
ENSMUSG00000064247.15_110251841_110255282_1	chr5	+	1494	9	NIC	ENSMUSG00000064247.15	novel	3314	7	NA	NA	2771	1463	intron_retention	FALSE	non_canonical	0	0	junction_1	0	211	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCCAGCGCCCAATGTTC	NA	False	NA	NA	False	NA	NA	NA	110251840	110255282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925
ENSMUSG00000064247.15_110251841_110255473_1	chr5	+	1371	10	NIC	ENSMUSG00000064247.15	novel	3314	7	NA	NA	2771	1654	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	200	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCCAGCACATCCCAGAC	NA	False	NA	NA	False	NA	NA	NA	110251840	110255473	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255377
ENSMUSG00000064247.15_110251841_110255577_1	chr5	+	1475	10	NIC	ENSMUSG00000064247.15	novel	3314	7	NA	NA	2771	1758	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	224	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTCCGCCCCTTCCAGA	NA	False	NA	NA	False	NA	NA	NA	110251840	110255577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255377
ENSMUSG00000064247.15_110251841_110256006_1	chr5	+	1646	9	NIC	ENSMUSG00000064247.15	novel	3314	7	NA	NA	2771	2187	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	607	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGAGCACGGCGGCGCGC	NA	False	NA	NA	False	GGGGCT	-42	NA	110251840	110256006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254807_110254925_110255064_110255721
ENSMUSG00000064247.15_110251841_110256006_3	chr5	+	1448	9	NIC	ENSMUSG00000064247.15	novel	3314	7	NA	NA	2771	2187	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	236	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGAGCACGGCGGCGCGC	NA	False	NA	NA	False	GGGGCT	-42	NA	110251840	110256006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254609_110254925_110255064_110255721
ENSMUSG00000064263.7_71549761_71561310_1	chr2	+	465	3	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	1	4	junction_1	15	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAAGACTCGGTTGCT	NA	False	NA	5	True	ATTAAA	-18	NA	71549760	71561310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_71549853_71560693_71560778_71561021
ENSMUSG00000064263.7_71551170_71561310_1	chr2	+	701	4	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	1409	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	13.0979218029257	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAAGACTCGGTTGCT	NA	False	NA	5	True	ATTAAA	-18	NA	71551169	71561310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_71551288_71553630_71553841_71560693_71560778_71561021
ENSMUSG00000064263.7_71559520_71561310_1	chr2	+	539	3	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	9759	0	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_1	13	60	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAAGACTCGGTTGCT	NA	False	NA	5	True	ATTAAA	-18	NA	71559519	71561310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_71559686_71560693_71560778_71561021
ENSMUSG00000064264.15_24206794_24215105_1	chr7	+	1090	4	NNC	ENSMUSG00000064264.15	novel	1182	3	NA	NA	239	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	150.608395811418	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCGAGCTGCGTGAGT	NA	False	NA	34	True	AATAAA	-28	NA	24206793	24215105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_24206862_24208193_24208403_24209970_24210179_24214500
ENSMUSG00000064264.15_24206794_24215105_2	chr7	+	920	3	FSM	ENSMUSG00000064264.15	ENSMUST00000177205.2	1159	3	239	0	239	0	multi-exon	FALSE	canonical	3	276	junction_2	107	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCGAGCTGCGTGAGT	NA	False	NA	34	True	AATAAA	-28	NA	24206793	24215105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_24206862_24209970_24210179_24214461
ENSMUSG00000064264.15_24206794_24215105_3	chr7	+	904	3	NIC	ENSMUSG00000064264.15	novel	1182	3	NA	NA	239	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	184.5	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCGAGCTGCGTGAGT	NA	False	NA	34	True	AATAAA	-28	NA	24206793	24215105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_24206862_24209947_24210179_24214500
ENSMUSG00000064264.15_24207181_24215105_1	chr7	+	973	3	NNC	ENSMUSG00000064264.15	novel	1045	3	NA	NA	626	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	126	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCGAGCTGCGTGAGT	NA	False	NA	34	True	AATAAA	-28	NA	24207180	24215105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_24207302_24209970_24210179_24214461
ENSMUSG00000064284.13_85691173_85695860_1	chr15	-	1550	4	FSM	ENSMUSG00000064284.13	ENSMUST00000125947.8	706	4	-569	-275	0	0	multi-exon	FALSE	canonical	3	301	junction_1	22.0151463012778	1079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	8123	False	NA	0	True	ATTAAA	-15	NA	85695860	85691172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102
ENSMUSG00000064284.13_85691173_85695860_2	chr15	-	1056	5	NNC	ENSMUSG00000064284.13	novel	997	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	139.440623564297	1787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	8123	False	NA	0	True	ATTAAA	-15	NA	85695860	85691172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102_85695250_85695743
ENSMUSG00000064284.13_85691173_85695860_3	chr15	-	909	4	NNC	ENSMUSG00000064284.13	novel	997	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	154.740643228166	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	8123	False	NA	0	True	ATTAAA	-15	NA	85695860	85691172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_85691740_85692456_85692569_85693412_85693526_85695743
ENSMUSG00000064284.13_85691173_85695860_4	chr15	-	1048	5	FSM	ENSMUSG00000064284.13	ENSMUST00000144067.8	761	5	-15	-272	0	0	multi-exon	FALSE	canonical	3	18	junction_4	131.723906334424	1734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	8123	False	NA	0	True	ATTAAA	-15	NA	85695860	85691172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102_85695250_85695751
ENSMUSG00000064307.14_101562191_101583037_1	chr7	-	1011	4	NIC	ENSMUSG00000064307.14	novel	835	4	NA	NA	0	0	intron_retention	FALSE	canonical	2	8	junction_3	3.09120616516523	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCCTGTACCTTGTTAAG	2563	False	NA	NA	False	AATAAA	-28	NA	101583037	101562190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_101562791_101564768_101564975_101569843_101569982_101582970
ENSMUSG00000064308.11_37288593_37292129_1	chr17	-	881	4	FSM	ENSMUSG00000064308.11	ENSMUST00000173707.2	724	4	-20	-137	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.84754619472471	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAAAATTTTGTGTGTTT	NA	False	NA	-20	True	ATTAAA	-29	NA	37292129	37288592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_37288999_37289344_37289439_37289542_37289826_37292031
ENSMUSG00000064326.14_112611401_112615471_1	chr12	+	528	4	FSM	ENSMUSG00000064326.14	ENSMUST00000021728.12	924	4	288	108	0	0	multi-exon	FALSE	canonical	3	1700	junction_3	44.6542271235322	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGGCCACAGACAGCACAA	7143	False	NA	-30	True	NA	NA	NA	112611400	112615471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_112611519_112613271_112613467_112614258_112614416_112615413
ENSMUSG00000064326.14_112611401_112615579_1	chr12	+	621	4	NNC	ENSMUSG00000064326.14	novel	924	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	828.018249933069	4041	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	7143	False	NA	17	True	AATAAA	-17	NA	112611400	112615579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_112611519_112613271_112613467_112614273_112614416_112615413
ENSMUSG00000064326.14_112611401_112615579_10	chr12	+	629	4	NNC	ENSMUSG00000064326.14	novel	924	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	810.736427919429	6501	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	7143	False	NA	17	True	AATAAA	-17	NA	112611400	112615579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_112611512_112613271_112613467_112614258_112614416_112615413
ENSMUSG00000064326.14_112611401_112615579_11	chr12	+	600	4	NNC	ENSMUSG00000064326.14	novel	924	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	808.851174334452	1193	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	7143	False	NA	17	True	AATAAA	-17	NA	112611400	112615579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_112611483_112613271_112613467_112614258_112614416_112615413
ENSMUSG00000064326.14_112611401_112615579_2	chr12	+	631	4	NNC	ENSMUSG00000064326.14	novel	924	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	810.736427919429	6558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	7143	False	NA	17	True	AATAAA	-17	NA	112611400	112615579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_112611525_112613282_112613467_112614258_112614416_112615413
ENSMUSG00000064326.14_112611401_112615579_3	chr12	+	631	4	NNC	ENSMUSG00000064326.14	novel	924	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	810.736427919429	10248	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	7143	False	NA	17	True	AATAAA	-17	NA	112611400	112615579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_112611519_112613276_112613467_112614258_112614416_112615413
ENSMUSG00000064326.14_112611401_112615579_4	chr12	+	625	4	NNC	ENSMUSG00000064326.14	novel	924	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	810.736427919429	4393	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	7143	False	NA	17	True	AATAAA	-17	NA	112611400	112615579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_112611519_112613282_112613467_112614258_112614416_112615413
ENSMUSG00000064326.14_112611401_112615579_5	chr12	+	441	3	FSM	ENSMUSG00000064326.14	ENSMUST00000109755.5	333	3	0	-108	0	0	multi-exon	FALSE	canonical	3	90	junction_1	805	658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	7143	False	NA	17	True	AATAAA	-17	NA	112611400	112615579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_112611519_112614258_112614416_112615413
ENSMUSG00000064326.14_112611401_112615579_6	chr12	+	709	5	NNC	ENSMUSG00000064326.14	novel	924	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	858.114357180906	5017	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	7143	False	NA	17	True	AATAAA	-17	NA	112611400	112615579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_112611519_112612782_112612856_112613271_112613467_112614258_112614416_112615413
ENSMUSG00000064326.14_112611401_112615579_7	chr12	+	550	4	NNC	ENSMUSG00000064326.14	novel	924	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	808.851174334452	687	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	7143	False	NA	17	True	AATAAA	-17	NA	112611400	112615579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_112611519_112613357_112613467_112614258_112614416_112615413
ENSMUSG00000064326.14_112611401_112615579_8	chr12	+	623	4	NNC	ENSMUSG00000064326.14	novel	924	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	836.510343962079	2826	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	7143	False	NA	17	True	AATAAA	-17	NA	112611400	112615579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_112611519_112613271_112613467_112614258_112614403_112615413
ENSMUSG00000064326.14_112611401_112615579_9	chr12	+	1634	3	ISM	ENSMUSG00000064326.14	ENSMUST00000021728.12	924	4	288	0	0	0	intron_retention	FALSE	canonical	3	1739	junction_2	34.5	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	7143	False	NA	17	True	AATAAA	-17	NA	112611400	112615579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_112611519_112613271_112613467_112614258
ENSMUSG00000064373.14_3309983_3333023_1	chr15	+	702	6	NIC	ENSMUSG00000064373.14	novel	2013	5	NA	NA	8416	23033	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	47	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGTAGCTGGTCCGTTTC	6694	False	NA	NA	False	NA	NA	NA	3309982	3333023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_3310232_3310504_3310589_3312299_3312428_3327582_3327689_3330586_3330676_3332977
ENSMUSG00000064373.14_3309983_3333023_2	chr15	+	939	9	NIC	ENSMUSG00000064373.14	novel	2013	5	NA	NA	8416	23033	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGTAGCTGGTCCGTTTC	6694	False	NA	NA	False	NA	NA	NA	3309982	3333023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_3310232_3310504_3310589_3312299_3312428_3319606_3319710_3321861_3321927_3323334_3323404_3327582_3327689_3330586_3330676_3332977
ENSMUSG00000065952.14_3617990_3623836_1	chr8	+	823	2	FSM	ENSMUSG00000065952.14	ENSMUST00000138454.2	637	2	0	-186	0	186	multi-exon	FALSE	canonical	3	29	junction_1	0	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTGCCTCTGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	3617989	3623836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_3618097_3623120
ENSMUSG00000065952.14_3617990_3628597_1	chr8	+	824	4	NNC	ENSMUSG00000065952.14	novel	960	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10.3387082795139	195	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATCTGTTTATTTAT	NA	False	NA	24	True	ATTAAA	-44	NA	3617989	3628597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_3618191_3623120_3623222_3627840_3628046_3628280
ENSMUSG00000065952.14_3617990_3628597_2	chr8	+	730	4	NNC	ENSMUSG00000065952.14	novel	960	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_3	10.3387082795139	130	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATCTGTTTATTTAT	NA	False	NA	24	True	ATTAAA	-44	NA	3617989	3628597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_3618097_3623120_3623222_3627840_3628046_3628280
ENSMUSG00000065952.14_3617990_3628597_3	chr8	+	629	3	NNC	ENSMUSG00000065952.14	novel	960	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_2	1.5	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATCTGTTTATTTAT	NA	False	NA	24	True	ATTAAA	-44	NA	3617989	3628597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_3618097_3627840_3628046_3628280
ENSMUSG00000065952.14_3617990_3630525_1	chr8	+	738	5	ISM	ENSMUSG00000065952.14	ENSMUST00000136592.2	1621	6	-8	4251	0	1928	5prime_fragment	FALSE	canonical	3	9	junction_4	8.46684711093805	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGCGATATTCTCACAT	NA	False	NA	NA	False	ATTAAA	-1	NA	3617989	3630525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_3618097_3623120_3623222_3627840_3628046_3629722_3629922_3630399
ENSMUSG00000065968.9_13804521_13918859_1	chr16	-	1836	6	NIC	ENSMUSG00000065968.9	novel	853	3	NA	NA	-114107	-3858	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	98	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCAGCACCTGAAAGCTC	NA	False	NA	NA	False	NA	NA	NA	13918859	13804520	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_13804758_13867246_13867371_13906809_13906884_13911752_13911868_13913767_13913851_13917656
ENSMUSG00000065968.9_13804521_13919155_1	chr16	-	2132	6	NIC	ENSMUSG00000065968.9	novel	853	3	NA	NA	-114403	-3858	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	139	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCAGCACCTGAAAGCTC	NA	False	NA	NA	False	NA	NA	NA	13919155	13804520	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_13804758_13867246_13867371_13906809_13906884_13911752_13911868_13913767_13913851_13917656
ENSMUSG00000065990.13_155916126_155917521_1	chr4	+	865	4	NIC	ENSMUSG00000065990.13	novel	1159	4	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	91	junction_1	1100.13494121807	14872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGGCCGACCTAGAGTT	NA	False	NA	30	True	AATAAA	-20	NA	155916125	155917521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_155916193_155916349_155916528_155916808_155917255_155917347
ENSMUSG00000065990.13_155916126_155917521_2	chr4	+	775	4	FSM	ENSMUSG00000065990.13	ENSMUST00000084097.12	1159	4	318	66	0	3	multi-exon	FALSE	canonical	3	1785	junction_1	303.738191357111	18149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGGCCGACCTAGAGTT	NA	False	NA	30	True	AATAAA	-20	NA	155916125	155917521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155916193_155916439_155916528_155916808_155917255_155917347
ENSMUSG00000065990.13_155916126_155917521_3	chr4	+	896	4	NIC	ENSMUSG00000065990.13	novel	773	4	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	3	64	junction_1	1112.8534894086	7844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGGCCGACCTAGAGTT	NA	False	NA	30	True	AATAAA	-20	NA	155916125	155917521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_155916224_155916349_155916528_155916808_155917255_155917347
ENSMUSG00000065999.14_147637734_147669655_1	chr4	+	2531	5	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	39.5434887181189	2087	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147637733	147669655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147637884_147661528_147661587_147665698_147665826_147667290_147668023_147668191
ENSMUSG00000066000.13_147696394_147723683_1	chr4	-	2450	4	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	3270	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	219.606213229246	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147723683	147696393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147702956_147723554
ENSMUSG00000066000.13_147696394_147726970_1	chr4	-	2624	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	233.592058940367	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147726970	147696393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147703015_147725368_147725463_147726820
ENSMUSG00000066000.13_147696394_147726970_2	chr4	-	2612	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	233.592058940367	892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147726970	147696393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147702956_147725321_147725463_147726820
ENSMUSG00000066000.13_147696394_147726970_3	chr4	-	2624	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_4	198.757861479741	1072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147726970	147696393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726761
ENSMUSG00000066000.13_147696394_147727022_1	chr4	-	2693	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	233.355281705814	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147727022	147696393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147702956_147725321_147725463_147726791
ENSMUSG00000066000.13_147698244_147787053_1	chr4	-	739	5	Fusion	ENSMUSG00000066000.13_ENSMUSG00000062518.8	novel	2594	5	NA	NA	-43	124	multi-exon	FALSE	canonical	2	15	junction_4	197.355485102391	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCTTCTACCATTAGTC	NA	False	NA	NA	False	TATAAA	-21	NA	147787053	147698243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147786879
ENSMUSG00000066009.9_146033868_146063194_1	chr4	+	2679	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	0	3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	82.8322853723112	1535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033867	146063194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726_146061381_146061549
ENSMUSG00000066037.15_136038279_136066584_1	chr4	+	1396	10	ISM	ENSMUSG00000066037.15	ENSMUST00000105850.8	2683	11	0	1408	0	0	5prime_fragment	FALSE	canonical	3	160	junction_1	131.584456284937	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGACAGGCCTCCAGAAGCA	NA	False	NA	NA	False	AAGAAA	-21	NA	136038278	136066584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_136038401_136041400_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486
ENSMUSG00000066037.15_136038279_136067992_1	chr4	+	2522	10	FSM	ENSMUSG00000066037.15	ENSMUST00000084219.12	2647	10	-57	182	0	0	multi-exon	FALSE	canonical	3	84	junction_2	166.354225660371	948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATTTCAAATTCAATTGT	NA	False	NA	32	True	AATAAA	-26	NA	136038278	136067992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_136038401_136043671_136043796_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
ENSMUSG00000066042.5_132186042_132191232_3	chr4	-	1621	5	NNC	ENSMUSG00000066042.5	novel	1675	3	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	129.389673080969	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGTGATTCTGATTCT	1047	False	NA	-15	True	AATAAA	-13	NA	132191232	132186041	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_132186186_132186211_132186367_132186394_132187425_132190175_132190320_132191084
ENSMUSG00000066057.8_95057540_95082560_1	chr17	-	1224	10	NNC	ENSMUSG00000066057.8	novel	1909	5	NA	NA	-10591	9832	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	182	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAAGTTTCCGCCCGCGC	NA	False	NA	NA	False	NA	NA	NA	95082560	95057539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071311_95074284_95074376_95078561_95078667_95079284_95079389_95082319
ENSMUSG00000066057.8_95057540_95082560_2	chr17	-	1266	10	NIC	ENSMUSG00000066057.8	novel	1909	5	NA	NA	-10591	9832	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	277	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAAGTTTCCGCCCGCGC	NA	False	NA	NA	False	NA	NA	NA	95082560	95057539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
ENSMUSG00000066057.8_95057540_95082560_3	chr17	-	1171	9	NIC	ENSMUSG00000066057.8	novel	1909	5	NA	NA	-10591	9832	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	124	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAAGTTTCCGCCCGCGC	NA	False	NA	NA	False	NA	NA	NA	95082560	95057539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_95057661_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
ENSMUSG00000066148.4_62327034_62341746_1	chr4	+	1742	14	FSM	ENSMUSG00000066148.4	ENSMUST00000084524.4	5223	14	0	3481	0	178	multi-exon	FALSE	canonical	3	246	junction_9	29.7191986640079	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCATGTGTTGGATTGGAT	NA	False	NA	NA	False	NA	NA	NA	62327033	62341746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454
ENSMUSG00000066148.4_62327034_62342711_1	chr4	+	2707	14	FSM	ENSMUSG00000066148.4	ENSMUST00000084524.4	5223	14	0	2516	0	1143	multi-exon	FALSE	canonical	3	246	junction_9	29.7191986640079	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAACTGGAAAAAATCCTAA	NA	False	NA	30	True	ATTAAA	-18	NA	62327033	62342711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454
ENSMUSG00000066148.4_62327034_62342839_1	chr4	+	2835	14	FSM	ENSMUSG00000066148.4	ENSMUST00000084524.4	5223	14	0	2388	0	1271	multi-exon	FALSE	canonical	3	246	junction_9	29.7191986640079	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTTGAAAGGATTATTTT	NA	False	NA	9	True	AGTAAA	-16	NA	62327033	62342839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454
ENSMUSG00000066149.12_62312042_62326862_1	chr4	-	1483	3	FSM	ENSMUSG00000066149.12	ENSMUST00000107459.2	654	3	0	-829	0	778	multi-exon	FALSE	canonical	3	31	junction_2	175	813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGACTCTTTATTATTG	2681	False	NA	NA	False	AATAAA	-22	NA	62326862	62312041	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_62313259_62320960_62321153_62326788
ENSMUSG00000066149.12_62312042_62326862_2	chr4	-	1580	4	FSM	ENSMUSG00000066149.12	ENSMUST00000084525.12	819	4	17	-778	0	778	multi-exon	FALSE	canonical	3	361	junction_3	9.67241208569794	4345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGACTCTTTATTATTG	2681	False	NA	NA	False	AATAAA	-22	NA	62326862	62312041	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_62313259_62320960_62321153_62322692_62322790_62326788
ENSMUSG00000066150.13_62278964_62307758_1	chr4	+	1470	5	FSM	ENSMUSG00000066150.13	ENSMUST00000084526.12	3718	5	0	2248	0	-2248	multi-exon	FALSE	canonical	3	753	junction_3	40.1932830209228	1730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGACTCAGTACCTTGGT	NA	False	NA	13	True	AATAAA	-16	NA	62278963	62307758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_62279081_62303728_62303916_62304327_62304401_62306103_62306273_62306834
ENSMUSG00000066151.13_62263551_62278707_1	chr4	-	563	4	FSM	ENSMUSG00000066151.13	ENSMUST00000131977.2	1739	4	-1	1177	0	-1177	multi-exon	FALSE	canonical	3	72	junction_2	12.5698050899765	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGGAATGCTTGCTTTAG	6994	False	NA	NA	False	ATTAAA	-13	NA	62278707	62263550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_62263815_62264293_62264379_62270669_62270783_62278606
ENSMUSG00000066152.12_62204686_62215714_1	chr4	+	886	4	FSM	ENSMUSG00000066152.12	ENSMUST00000084530.9	1820	4	0	934	0	0	multi-exon	FALSE	canonical	3	73	junction_3	15.369522511198	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGGCCATGGAACCTGGA	NA	False	NA	NA	False	ATTAAA	-23	NA	62204685	62215714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_62204812_62210868_62210936_62214123_62214314_62215211
ENSMUSG00000066152.12_62204686_62216648_1	chr4	+	1630	3	NIC	ENSMUSG00000066152.12	novel	1820	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	50	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGTTGGTCCGTTTC	NA	False	NA	9	True	AATAAA	-20	NA	62204685	62216648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_62204812_62210868_62210936_62215211
ENSMUSG00000066170.8_28742267_28743629_1	chr17	+	311	2	Genic_Genomic	ENSMUSG00000066170.8	novel	2679	1	NA	NA	0	-692	multi-exon	FALSE	canonical	0	0	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGGAAGATGGTGGACAT	NA	False	NA	NA	False	NA	NA	NA	28742266	28743629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_+_28742341_28743392
ENSMUSG00000066175.3_126248494_126271951_1	chr7	-	1239	11	Genic_Genomic	ENSMUSG00000066175.3	novel	1052	1	NA	NA	-23185	-99	multi-exon	TRUE	non_canonical	0	0	junction_1	0	321	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGCGGAGGACTCCTCTG	NA	False	NA	NA	False	NA	NA	NA	126271951	126248493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_126248650_126260223_126260321_126261737_126261824_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
ENSMUSG00000066175.3_126248494_126271951_2	chr7	-	1404	9	Genic_Genomic	ENSMUSG00000066175.3	novel	1052	1	NA	NA	-23185	-99	multi-exon	TRUE	non_canonical	0	0	junction_1	0	128	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGCGGAGGACTCCTCTG	NA	False	NA	NA	False	NA	NA	NA	126271951	126248493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327
ENSMUSG00000066175.3_126248494_126271951_3	chr7	-	1146	10	Genic_Genomic	ENSMUSG00000066175.3	novel	1052	1	NA	NA	-23185	-99	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1453	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGCGGAGGACTCCTCTG	NA	False	NA	NA	False	NA	NA	NA	126271951	126248493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271216_126271246_126271327_126271491_126271741
ENSMUSG00000066357.7_108447085_108449972_1	chr9	-	1890	10	NIC	ENSMUSG00000066357.7	novel	4163	6	NA	NA	5966	2425	intron_retention	TRUE	non_canonical	0	0	junction_1	0	294	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGTAAGTTATCCGTAGA	2804	False	NA	NA	False	ACTAAA	-8	NA	108449972	108447084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448373_108448644_108448719_108448811_108448874_108448980_108449497_108449591_108449661_108449749
ENSMUSG00000066357.7_108447085_108449972_2	chr9	-	1745	12	NIC	ENSMUSG00000066357.7	novel	4163	6	NA	NA	5966	2425	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	271	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGTAAGTTATCCGTAGA	2804	False	NA	NA	False	ACTAAA	-8	NA	108449972	108447084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448373_108448644_108448719_108448811_108448874_108448980_108449064_108449139_108449317_108449385_108449497_108449591_108449661_108449749
ENSMUSG00000066441.15_79221111_79238626_1	chr12	-	2821	7	FSM	ENSMUSG00000066441.15	ENSMUST00000161204.8	3262	7	441	0	-59	0	multi-exon	FALSE	canonical	3	91	junction_5	13.7113092008021	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTATGGGGATATTGGA	NA	False	NA	-18	True	AATAAA	-40	NA	79238626	79221110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_79223025_79229426_79229617_79231897_79232108_79233187_79233293_79235254_79235411_79235762_79235882_79238499
ENSMUSG00000066441.15_79222325_79238626_1	chr12	-	1607	7	FSM	ENSMUSG00000066441.15	ENSMUST00000161204.8	3262	7	441	1214	-59	0	multi-exon	FALSE	canonical	3	91	junction_5	13.7113092008021	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGCTGTTTCTCAGCCTA	NA	False	NA	-3	True	AATAAA	-18	NA	79238626	79222324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_79223025_79229426_79229617_79231897_79232108_79233187_79233293_79235254_79235411_79235762_79235882_79238499
ENSMUSG00000066442.18_89093210_89097691_1	chr9	+	585	2	ISM	ENSMUSG00000066442.18	ENSMUST00000118870.8	705	3	0	10820	0	-10820	5prime_fragment	FALSE	canonical	3	175	junction_1	0	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCCTTTTGTGTATTTTG	NA	False	NA	NA	False	CATAAA	-15	NA	89093209	89097691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_89093365_89097261
ENSMUSG00000066442.18_89093210_89122279_1	chr9	+	540	2	NIC	ENSMUSG00000066442.18	novel	816	3	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	31	junction_1	0	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATCAATAGAAATTATTA	NA	False	NA	NA	False	AATAAA	-21	NA	89093209	89122279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_89093365_89121894
ENSMUSG00000066442.18_89093210_89122279_2	chr9	+	872	4	NIC	ENSMUSG00000066442.18	novel	816	3	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	3	14	junction_1	172.027775535102	4871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATCAATAGAAATTATTA	NA	False	NA	NA	False	AATAAA	-21	NA	89093209	89122279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_89093365_89096464_89096535_89097261_89097524_89121894
ENSMUSG00000066442.18_89093453_89122279_1	chr9	+	1522	5	NIC	ENSMUSG00000066442.18	novel	1406	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	164.63975826027	2605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATCAATAGAAATTATTA	NA	False	NA	NA	False	AATAAA	-21	NA	89093452	89122279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_89093535_89094586_89095310_89096464_89096535_89097261_89097524_89121894
ENSMUSG00000066551.13_148985038_148989855_1	chr5	-	1317	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	-5	1526	-5	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	27202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTTGTCCTTTTCATA	6759	False	NA	NA	False	AGTAAA	-18	NA	148989855	148985037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
ENSMUSG00000066551.13_148985603_148989855_1	chr5	-	752	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	-5	2091	-5	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	3056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAGGAGGAAGAAGAGGAA	6759	False	NA	NA	False	NA	NA	NA	148989855	148985602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
ENSMUSG00000066571.14_33984673_34012975_1	chr7	-	765	2	FSM	ENSMUSG00000066571.14	ENSMUST00000206018.2	2055	2	0	1290	0	229	multi-exon	FALSE	canonical	3	60	junction_1	0	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACTCAGAACCCTGACCTG	9809	False	NA	NA	False	NA	NA	NA	34012975	33984672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_33985379_34012916
ENSMUSG00000066571.14_33984673_34012975_2	chr7	-	770	2	ISM	ENSMUSG00000066571.14	ENSMUST00000108074.8	6224	14	1	48541	0	229	5prime_fragment	FALSE	canonical	3	49	junction_1	0	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACTCAGAACCCTGACCTG	9809	False	NA	NA	False	NA	NA	NA	34012975	33984672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_33985379_34012911
ENSMUSG00000066613.15_110071514_110155338_1	chr5	+	463	3	Fusion	ENSMUSG00000090015.9_ENSMUSG00000066613.15	novel	2509	3	NA	NA	248	5	multi-exon	FALSE	canonical	3	26	junction_1	109.5	1218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGGTGTCTGATTTGTGT	NA	False	NA	NA	False	NA	NA	NA	110071513	110155338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr5_+_110071633_110154809_110154937_110155121
ENSMUSG00000066621.13_144154717_144160381_1	chr5	-	919	2	FSM	ENSMUSG00000066621.13	ENSMUST00000136018.2	493	2	-5	-421	-5	421	multi-exon	FALSE	canonical	3	82	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATCTAAGGT	NA	False	NA	NA	False	NA	NA	NA	144160381	144154716	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_144155567_144160312
ENSMUSG00000066637.3_9080028_9086183_1	chr12	+	763	3	NNC	ENSMUSG00000066637.3	novel	1645	2	NA	NA	0	-211	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	73	1672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTATTCCCAACTTTG	NA	False	NA	17	True	AGTAAA	-19	NA	9080027	9086183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_9080197_9084921_9085094_9085761
ENSMUSG00000066637.3_9080028_9086183_2	chr12	+	758	3	FSM	ENSMUSG00000066637.3	ENSMUST00000085741.2	1000	3	31	211	0	-211	multi-exon	FALSE	canonical	3	121	junction_2	13	1737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTATTCCCAACTTTG	NA	False	NA	17	True	AGTAAA	-19	NA	9080027	9086183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_9080197_9084921_9085089_9085761
ENSMUSG00000066652.6_180720673_180726009_1	chr1	+	1814	4	FSM	ENSMUSG00000066652.6	ENSMUST00000085797.6	2473	4	0	659	0	-659	multi-exon	FALSE	canonical	3	1148	junction_3	71.1071179434395	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTATTCTGTGTGCTCTT	NA	False	NA	10	True	NA	NA	NA	180720672	180726009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014
ENSMUSG00000066652.6_180720673_180726982_1	chr1	+	2787	4	FSM	ENSMUSG00000066652.6	ENSMUST00000085797.6	2473	4	0	-314	0	314	multi-exon	FALSE	canonical	3	1148	junction_3	71.1071179434395	2537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCAGTGTCTGTTTATT	NA	False	NA	24	True	NA	NA	NA	180720672	180726982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014
ENSMUSG00000066652.6_180722023_180726668_1	chr1	+	2038	2	FSM	ENSMUSG00000066652.6	ENSMUST00000155546.2	422	2	0	-1616	0	0	multi-exon	FALSE	canonical	3	1148	junction_1	0	1154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGAGAGCGAGTCATCGA	NA	False	NA	21	True	AATAAA	-19	NA	180722022	180726668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180722407_180725014
ENSMUSG00000066705.8_45281740_45307457_1	chr9	+	1520	7	NNC	ENSMUSG00000066705.8	novel	1789	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	385.118776771819	905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	625	False	NA	22	True	AATAAA	-26	NA	45281739	45307457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_45281787_45301285_45301370_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
ENSMUSG00000066705.8_45281740_45307457_2	chr9	+	1524	8	NNC	ENSMUSG00000066705.8	novel	1789	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	349.408830186423	3600	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	625	False	NA	22	True	AATAAA	-26	NA	45281739	45307457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303520_45303563_45303973_45304024_45306280
ENSMUSG00000066705.8_45281740_45307457_4	chr9	+	1524	8	NNC	ENSMUSG00000066705.8	novel	1789	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	359.104327970782	3844	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	625	False	NA	22	True	AATAAA	-26	NA	45281739	45307457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_45281787_45301285_45301346_45301934_45301971_45302082_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
ENSMUSG00000066705.8_45281740_45307457_5	chr9	+	1522	8	NNC	ENSMUSG00000066705.8	novel	1789	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	356.66825608394	2926	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	625	False	NA	22	True	AATAAA	-26	NA	45281739	45307457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306290
ENSMUSG00000066705.8_45281740_45307457_6	chr9	+	1527	8	NNC	ENSMUSG00000066705.8	novel	1789	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	361.412196128194	3317	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	625	False	NA	22	True	AATAAA	-26	NA	45281739	45307457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_45281787_45301285_45301346_45301939_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
ENSMUSG00000066705.8_45286839_45307457_1	chr9	+	1381	6	NNC	ENSMUSG00000066705.8	novel	2362	2	NA	NA	5099	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	420.787547344263	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	5724	False	NA	22	True	AATAAA	-26	NA	45286838	45307457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_45286847_45302090_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
ENSMUSG00000066705.8_45286839_45307457_2	chr9	+	1397	6	NNC	ENSMUSG00000066705.8	novel	2362	2	NA	NA	5099	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	420.787547344263	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	5724	False	NA	22	True	AATAAA	-26	NA	45286838	45307457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_45286847_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
ENSMUSG00000066705.8_45286839_45307457_3	chr9	+	1493	8	NNC	ENSMUSG00000066705.8	novel	2362	2	NA	NA	5099	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	364.392253328353	1208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	5724	False	NA	22	True	AATAAA	-26	NA	45286838	45307457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_45286847_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
ENSMUSG00000066705.8_45286839_45307457_4	chr9	+	1285	4	NNC	ENSMUSG00000066705.8	novel	2362	2	NA	NA	5099	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	483.14962025811	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	5724	False	NA	22	True	AATAAA	-26	NA	45286838	45307457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_45286847_45303512_45303563_45303973_45304024_45306280
ENSMUSG00000066705.8_45302095_45307457_1	chr9	+	1358	4	NNC	ENSMUSG00000066705.8	novel	1789	8	NA	NA	20355	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	483.14962025811	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	2674	False	NA	22	True	AATAAA	-26	NA	45302094	45307457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_45302156_45303492_45303563_45303973_45304024_45306280
ENSMUSG00000066829.8_22190074_22218985_1	chr9	-	1259	8	FSM	ENSMUSG00000066829.8	ENSMUST00000086278.7	3238	8	-51	2030	-41	289	multi-exon	FALSE	canonical	3	16	junction_6	8.19407451411428	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACAGCTCACTGTACATC	NA	False	NA	NA	False	NA	NA	NA	22218985	22190073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_22190577_22191748_22191856_22194463_22194557_22195312_22195440_22201834_22201939_22209712_22209806_22216807_22216899_22218844
ENSMUSG00000066838.8_7206098_7212997_1	chr7	-	1795	5	FSM	ENSMUSG00000066838.8	ENSMUST00000074455.9	2777	5	0	982	0	-982	multi-exon	FALSE	canonical	3	42	junction_2	7.29725975966321	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCGTGCTAATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	7212997	7206097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_7207359_7208511_7208599_7209244_7209372_7210523_7210563_7212716
ENSMUSG00000066839.13_21983542_21996723_1	chr9	-	1479	8	NIC	ENSMUSG00000066839.13	novel	1673	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	10	junction_7	80.1136947196461	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5896	False	NA	-9	True	AATAAA	-15	NA	21996723	21983541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21996652
ENSMUSG00000066861.15_121014785_121016510_1	chr5	-	460	3	ISM	ENSMUSG00000066861.15	ENSMUST00000161809.2	769	4	1156	-222	1156	0	3prime_fragment	FALSE	canonical	3	316	junction_2	26.5	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121016510	121014784	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_121015091_121015245_121015273_121016383
ENSMUSG00000066861.15_121014785_121025653_1	chr5	-	1405	7	FSM	ENSMUSG00000066861.15	ENSMUST00000086368.12	1977	7	-8	580	-8	0	multi-exon	FALSE	canonical	3	61	junction_5	116.597241248096	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121025653	121014784	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_121015091_121015245_121015273_121016383_121016538_121017162_121017396_121019947_121020133_121023835_121024125_121025442
ENSMUSG00000066892.15_20549085_20553797_1	chr9	-	1781	3	FSM	ENSMUSG00000066892.15	ENSMUST00000086459.6	2086	3	305	0	-188	0	multi-exon	TRUE	canonical	3	69	junction_2	12	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTGTTGCACTTATTT	NA	False	NA	-4	True	ATTAAA	-18	NA	20553797	20549084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_20550495_20553319_20553393_20553499
ENSMUSG00000066892.15_20549085_20556043_1	chr9	-	1762	4	FSM	ENSMUSG00000066892.15	ENSMUST00000131343.8	761	4	11	-1012	0	0	multi-exon	FALSE	canonical	3	9	junction_3	34.3446583263767	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTGTTGCACTTATTT	NA	False	NA	-4	True	ATTAAA	-18	NA	20556043	20549084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_20550495_20553319_20553393_20555490_20555595_20555868
ENSMUSG00000066892.15_20553962_20558074_1	chr9	-	563	6	NNC	ENSMUSG00000066892.15	novel	2086	3	NA	NA	-2011	-1103	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	20183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTAGCTCCACCTTATG	NA	False	NA	NA	False	NA	NA	NA	20558074	20553961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_20554103_20556119_20556190_20556488_20556556_20556701_20556786_20556917_20556956_20557911
ENSMUSG00000066894.15_117457383_117463407_1	chr5	+	757	3	FSM	ENSMUSG00000066894.15	ENSMUST00000128524.2	572	3	-43	-142	0	142	multi-exon	FALSE	canonical	3	28	junction_1	2	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCCTCACACATGCTCG	NA	False	NA	NA	False	NA	NA	NA	117457382	117463407	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_117457569_117461564_117461646_117462917
ENSMUSG00000066900.12_117230502_117236377_1	chr5	-	722	3	ISM	ENSMUSG00000066900.12	ENSMUST00000086471.12	2425	12	17686	757	499	0	3prime_fragment	FALSE	canonical	3	651	junction_1	24	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGCCTTGGGCTTCTAC	NA	False	NA	-23	True	AATAAA	-15	NA	117236377	117230501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_117231097_117232974_117233060_117236335
ENSMUSG00000066979.7_131162120_131172906_1	chr7	+	1334	8	FSM	ENSMUSG00000066979.7	ENSMUST00000084502.7	2218	8	169	715	0	13	multi-exon	FALSE	canonical	3	1325	junction_6	52.1422700554033	1524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGTGTTTGTAAACATT	NA	False	NA	29	True	AATAAA	-24	NA	131162119	131172906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
ENSMUSG00000066979.7_131162120_131173621_1	chr7	+	2049	8	FSM	ENSMUSG00000066979.7	ENSMUST00000084502.7	2218	8	169	0	0	0	multi-exon	FALSE	canonical	3	1325	junction_6	52.1422700554033	1658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCCAGGTGTGTTACCT	NA	False	NA	8	True	ATTAAA	-17	NA	131162119	131173621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
ENSMUSG00000066979.7_131162136_131163622_1	chr7	+	600	3	ISM	ENSMUSG00000066979.7	ENSMUST00000207231.2	678	7	-32	6303	0	416	5prime_fragment	FALSE	canonical	3	1350	junction_2	18	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAGATAGATGGTTGTGA	NA	False	NA	NA	False	NA	NA	NA	131162135	131163622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_131162184_131162438_131162634_131163265
ENSMUSG00000067017.6_105383696_105386636_1	chr1	+	1356	2	NNC	ENSMUSG00000067017.6	novel	2858	2	NA	NA	0	82	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	171	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTTTTAAAGTTAAATAC	NA	False	NA	NA	False	AATACA	-31	NA	105383695	105386636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_105384428_105386012
ENSMUSG00000067071.9_91339205_91340944_1	chr1	-	1326	4	NNC	ENSMUSG00000067071.9	novel	1335	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	51.4003891035856	671	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGTGTCCAATGTGTG	NA	False	NA	-1	True	AATAAA	-35	NA	91340944	91339204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_91340205_91340442_91340525_91340614_91340693_91340778
ENSMUSG00000067085.2_53318127_53361724_1	chr19	-	2196	6	Genic_Genomic	ENSMUSG00000067085.2	novel	201	1	NA	NA	-1527	41870	multi-exon	FALSE	non_canonical	0	0	junction_1	0	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGCCTCCAGCAGGCGCT	NA	False	NA	NA	False	NA	NA	NA	53361724	53318126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr19_-_53318152_53319781_53319915_53334881_53334912_53357972_53358088_53358620_53358793_53360003
ENSMUSG00000067144.8_46743109_46744692_1	chr17	-	734	3	ISM	ENSMUSG00000067144.8	ENSMUST00000233715.2	1410	10	3863	-230	3863	0	3prime_fragment	FALSE	canonical	3	32	junction_1	4.5	198	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCTAGTAGCCAGGACT	7508	False	NA	NA	False	NA	NA	NA	46744692	46743108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_46743444_46743872_46744080_46744500
ENSMUSG00000067144.8_46743109_46745705_1	chr17	-	1097	5	ISM	ENSMUSG00000067144.8	ENSMUST00000233715.2	1410	10	2850	-230	2850	0	3prime_fragment	FALSE	canonical	3	15	junction_3	9.35414346693485	151	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCTAGTAGCCAGGACT	6495	False	NA	NA	False	NA	NA	NA	46745705	46743108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_46743444_46743872_46744080_46744500_46744610_46744774_46744990_46745474
ENSMUSG00000067144.8_46743109_46748555_1	chr17	-	1605	10	NNC	ENSMUSG00000067144.8	novel	1989	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_9	11.5960827783553	223	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCTAGTAGCCAGGACT	3645	False	NA	NA	False	NA	NA	NA	46748555	46743108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_46743444_46743872_46744080_46744500_46744610_46744774_46744990_46745474_46745585_46745810_46745935_46747734_46747904_46748004_46748160_46748248_46748353_46748478
ENSMUSG00000067148.16_46554846_46558911_1	chr17	-	1239	9	NNC	ENSMUSG00000067148.16	novel	1314	9	NA	NA	-17	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	250.833610188109	7741	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTTTTTTTTGTCTA	NA	False	NA	2	True	AATAAA	-25	NA	46558911	46554845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_46555147_46555231_46555349_46555451_46555596_46555724_46555878_46555956_46556077_46556541_46556675_46557032_46557141_46558654_46558727_46558820
ENSMUSG00000067148.16_46554846_46558911_2	chr17	-	1240	9	NNC	ENSMUSG00000067148.16	novel	1314	9	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	258.330910606919	7748	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTTTTTTTTGTCTA	NA	False	NA	2	True	AATAAA	-25	NA	46558911	46554845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_46555147_46555231_46555349_46555451_46555602_46555724_46555878_46555956_46556072_46556541_46556675_46557032_46557141_46558654_46558727_46558820
ENSMUSG00000067150.7_46513743_46519551_1	chr17	+	1093	5	FSM	ENSMUSG00000067150.7	ENSMUST00000233340.2	2137	5	0	1044	0	-1044	multi-exon	FALSE	canonical	3	272	junction_2	19.3180614969515	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGGCAGTGAGTTTCCA	NA	False	NA	NA	False	AATAAA	-17	NA	46513742	46519551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_46513952_46515580_46515703_46517412_46517486_46518704_46518843_46519000
ENSMUSG00000067150.7_46513743_46520430_1	chr17	+	1972	5	FSM	ENSMUSG00000067150.7	ENSMUST00000233340.2	2137	5	0	165	0	-165	multi-exon	FALSE	canonical	3	272	junction_2	19.3180614969515	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAATGTGGTGTAGTGGT	NA	False	NA	NA	False	NA	NA	NA	46513742	46520430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_46513952_46515580_46515703_46517412_46517486_46518704_46518843_46519000
ENSMUSG00000067150.7_46513743_46532599_1	chr17	+	1737	13	ISM	ENSMUSG00000067150.7	ENSMUST00000087031.7	5081	32	35	21925	0	12004	5prime_fragment	FALSE	canonical	2	141	junction_5	50.2186192783336	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAGTGCTTCAGGCAGTT	NA	False	NA	NA	False	CATAAA	-20	NA	46513742	46532599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_46513952_46515580_46515703_46517412_46517486_46518704_46518843_46519000_46519184_46525115_46525143_46525502_46525689_46526657_46526735_46528507_46528608_46529470_46529555_46530316_46530443_46531686_46531778_46532278
ENSMUSG00000067194.7_158155174_158168560_1	chrX	+	808	7	FSM	ENSMUSG00000067194.7	ENSMUST00000087143.7	5172	7	0	4364	0	-4364	multi-exon	FALSE	canonical	3	2276	junction_6	179.511064344854	2216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATACGCTAAGTCCACTT	5347	False	NA	25	True	NA	NA	NA	158155173	158168560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
ENSMUSG00000067194.7_158155174_158168560_2	chrX	+	802	7	NNC	ENSMUSG00000067194.7	novel	5172	7	NA	NA	0	-4364	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	961.903956859635	1664	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATACGCTAAGTCCACTT	5347	False	NA	25	True	NA	NA	NA	158155173	158168560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_158155412_158159382_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
ENSMUSG00000067194.7_158155174_158168560_3	chrX	+	734	7	NNC	ENSMUSG00000067194.7	novel	5172	7	NA	NA	0	-4364	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	976.601931870572	179	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATACGCTAAGTCCACTT	5347	False	NA	25	True	NA	NA	NA	158155173	158168560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168477
ENSMUSG00000067194.7_158155174_158168700_1	chrX	+	938	7	NNC	ENSMUSG00000067194.7	novel	5172	7	NA	NA	0	-4224	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	948.547383576007	9849	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGACTAAGCCCTGCCTT	5347	False	NA	14	True	AATAAA	-26	NA	158155173	158168700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162735_158162808_158165683_158165776_158168403
ENSMUSG00000067194.7_158155174_158168700_2	chrX	+	940	7	NNC	ENSMUSG00000067194.7	novel	5172	7	NA	NA	0	-4224	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	976.601931870572	9378	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGACTAAGCCCTGCCTT	5347	False	NA	14	True	AATAAA	-26	NA	158155173	158168700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168411
ENSMUSG00000067194.7_158155174_158168700_3	chrX	+	942	7	NNC	ENSMUSG00000067194.7	novel	5172	7	NA	NA	0	-4224	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	961.903956859635	10824	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGACTAAGCCCTGCCTT	5347	False	NA	14	True	AATAAA	-26	NA	158155173	158168700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_158155412_158159382_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
ENSMUSG00000067274.11_115695374_115701574_1	chr5	+	1175	7	NNC	ENSMUSG00000067274.11	novel	694	3	NA	NA	-2152	-212	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	8177.45098154404	176977	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115695373	115701574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_115695476_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
ENSMUSG00000067274.11_115697596_115701574_1	chr5	+	1084	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	0	-212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8178.1655118302	189964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115697595	115701574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_115697607_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
ENSMUSG00000067274.11_115697596_115701574_10	chr5	+	1076	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	0	-212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	8282.76607212564	13392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115697595	115701574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699326_115699412_115699578_115700484_115700626_115701341
ENSMUSG00000067274.11_115697596_115701574_11	chr5	+	1056	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	0	-212	at_least_one_novel_splicesite	FALSE	canonical	1	375	junction_5	7862.37467838651	4398	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115697595	115701574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700504_115700626_115701341
ENSMUSG00000067274.11_115697596_115701574_12	chr5	+	1065	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	0	-212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	7950.63075065956	44817	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115697595	115701574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699567_115700484_115700626_115701341
ENSMUSG00000067274.11_115697596_115701574_14	chr5	+	1066	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	0	-212	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6009.36112568457	32686	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115697595	115701574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_115697599_115697845_115697938_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
ENSMUSG00000067274.11_115697596_115701574_2	chr5	+	1034	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	0	-212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7997.5735834203	5949	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115697595	115701574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115699064_115699199_115699305_115699391_115699578_115700484_115700626_115701341
ENSMUSG00000067274.11_115697596_115701574_3	chr5	+	1071	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	0	-212	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6009.36112568457	70241	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115697595	115701574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_115697599_115697845_115697948_115698804_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
ENSMUSG00000067274.11_115697596_115701574_4	chr5	+	1067	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	0	-212	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	7950.63075065956	31029	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115697595	115701574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700493_115700626_115701341
ENSMUSG00000067274.11_115697596_115701574_5	chr5	+	1032	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	0	-212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	7941.6086251814	2742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115697595	115701574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700634_115701393
ENSMUSG00000067274.11_115697596_115701574_6	chr5	+	1051	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	0	-212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	7941.6086251814	14808	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115697595	115701574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700601_115701341
ENSMUSG00000067274.11_115697596_115701574_7	chr5	+	1070	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	0	-212	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	8282.76607212564	25721	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115697595	115701574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699397_115699578_115700484_115700626_115701341
ENSMUSG00000067274.11_115697596_115701574_8	chr5	+	1033	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	0	-212	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	6007.40905512148	6728	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115697595	115701574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_115697599_115697845_115697948_115698842_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
ENSMUSG00000067274.11_115697596_115701574_9	chr5	+	1051	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	0	-212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6009.36112568457	8211	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	25	True	AATAAA	-19	NA	115697595	115701574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_115697599_115697845_115697923_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
ENSMUSG00000067288.14_34042026_34043469_1	chr17	-	288	4	NNC	ENSMUSG00000067288.14	novel	392	4	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	427	junction_1	9234.517457164	18236	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	False	NA	-27	True	AATAAA	-12	NA	34043469	34042025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_34042091_34042191_34042305_34043272_34043321_34043407
ENSMUSG00000067288.14_34042026_34043469_2	chr17	-	476	2	FSM	ENSMUSG00000067288.14	ENSMUST00000173879.8	342	2	-149	15	-1	0	multi-exon	FALSE	canonical	3	22076	junction_1	0	1353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	False	NA	-27	True	AATAAA	-12	NA	34043469	34042025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34042305_34043272
ENSMUSG00000067288.14_34042026_34043469_3	chr17	-	298	4	NNC	ENSMUSG00000067288.14	novel	382	4	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	7060.40897461959	172123	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	False	NA	-27	True	AATAAA	-12	NA	34043469	34042025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_34042091_34042166_34042305_34043287_34043321_34043407
ENSMUSG00000067288.14_34042026_34043469_4	chr17	-	389	3	ISM	ENSMUSG00000067288.14	ENSMUST00000173019.8	437	4	-3	4025	-1	0	5prime_fragment	FALSE	canonical	3	16929	junction_2	2573.5	32310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	False	NA	-27	True	AATAAA	-12	NA	34043469	34042025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_34042305_34043272_34043321_34043407
ENSMUSG00000067288.14_34042026_34043469_6	chr17	-	1357	2	FSM	ENSMUSG00000067288.14	ENSMUST00000174788.2	812	2	-11	-534	-1	0	multi-exon	FALSE	canonical	3	16929	junction_1	0	848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	False	NA	-27	True	AATAAA	-12	NA	34043469	34042025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34043321_34043407
ENSMUSG00000067288.14_34042026_34174637_1	chr17	-	936	9	Fusion	ENSMUSG00000067288.14_ENSMUSG00000008668.16	novel	715	6	NA	NA	0	0	multi-exon	FALSE	canonical	0	0	junction_4	8438.33125442318	405012	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	False	NA	-27	True	AATAAA	-12	NA	34174637	34042025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr17_-_34042091_34042170_34042305_34043272_34043321_34043407_34043521_34170942_34171093_34171194_34171287_34171376_34171566_34174051_34174151_34174591
ENSMUSG00000067338.7_145561743_145567205_1	chr6	+	1515	5	FSM	ENSMUSG00000067338.7	ENSMUST00000087445.7	1775	5	260	0	260	0	multi-exon	FALSE	canonical	3	1181	junction_3	43.6312674580971	5219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGCTTCCCTGTGTGCT	NA	False	NA	16	True	AATAAA	-36	NA	145561742	145567205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_145561816_145563958_145564182_145564457_145564607_145564908_145565590_145566816
ENSMUSG00000067365.12_38417731_38419653_1	chr5	+	419	2	ISM	ENSMUSG00000067365.12	ENSMUST00000128025.2	827	3	0	3081	0	0	5prime_fragment	FALSE	canonical	3	219	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAAAAAAAACAAACC	NA	False	NA	NA	False	NA	NA	NA	38417730	38419653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_38417837_38419340
ENSMUSG00000067365.12_38417731_38426978_1	chr5	+	1077	5	NNC	ENSMUSG00000067365.12	novel	1291	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	101.116269709676	4231	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTAATGCAAATTTGG	NA	False	NA	NA	False	AATAAA	-25	NA	38417730	38426978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_38417837_38419352_38419483_38422155_38422315_38424522_38424629_38426402
ENSMUSG00000067365.12_38417731_38426978_2	chr5	+	1082	5	NNC	ENSMUSG00000067365.12	novel	1291	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	102.75304131752	4305	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTAATGCAAATTTGG	NA	False	NA	NA	False	AATAAA	-25	NA	38417730	38426978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_38417837_38419340_38419483_38422155_38422315_38424522_38424629_38426409
ENSMUSG00000067367.10_38377873_38391643_1	chr5	+	1044	6	NNC	ENSMUSG00000067367.10	novel	1563	9	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	925.734864850622	701	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTATCTATGATAACAA	NA	False	NA	16	True	AATAAA	-17	NA	38377872	38391643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_38377980_38381970_38382045_38387953_38388335_38388616_38388704_38390585_38390672_38391334
ENSMUSG00000067367.10_38377873_38391643_2	chr5	+	1491	9	NNC	ENSMUSG00000067367.10	novel	1563	9	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	758.80744222431	6425	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTATCTATGATAACAA	NA	False	NA	16	True	AATAAA	-17	NA	38377872	38391643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_38377980_38381976_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
ENSMUSG00000067367.10_38377873_38391643_3	chr5	+	1595	10	NIC	ENSMUSG00000067367.10	novel	1563	9	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	182	junction_2	844.746612604142	5146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTATCTATGATAACAA	NA	False	NA	16	True	AATAAA	-17	NA	38377872	38391643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_38377980_38380477_38380576_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
ENSMUSG00000067367.10_38377873_38391643_4	chr5	+	1492	9	NNC	ENSMUSG00000067367.10	novel	1563	9	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	744.190835740403	5572	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTATCTATGATAACAA	NA	False	NA	16	True	AATAAA	-17	NA	38377872	38391643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_38377980_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388621_38388704_38390585_38390672_38391334
ENSMUSG00000067389.4_45896128_45906453_1	chr17	+	2053	14	NIC	ENSMUSG00000067389.4	novel	811	2	NA	NA	-918	7150	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1266	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGCTTCCCGCGCCCGCCC	NA	False	NA	NA	False	NA	NA	NA	45896127	45906453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
ENSMUSG00000067389.4_45896128_45906453_2	chr17	+	2179	13	NIC	ENSMUSG00000067389.4	novel	811	2	NA	NA	-918	7150	intron_retention	FALSE	non_canonical	0	0	junction_1	0	709	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGCTTCCCGCGCCCGCCC	NA	False	NA	NA	False	NA	NA	NA	45896127	45906453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
ENSMUSG00000067424.14_33311432_33325170_1	chr17	+	1896	4	FSM	ENSMUSG00000067424.14	ENSMUST00000140829.2	758	4	0	-1138	0	1138	multi-exon	FALSE	canonical	3	19	junction_1	2.05480466765633	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTATGAAGTTTGCTTAAG	NA	False	NA	NA	False	AATAAA	-17	NA	33311431	33325170	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_33311567_33321204_33321332_33321516_33321578_33323597
ENSMUSG00000067562.12_101846569_101853556_1	chrX	+	1510	8	NNC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	56.4623768539724	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGGTCTTCACTGTAACT	NA	False	NA	NA	False	AATAAA	-20	NA	101846568	101853556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_101846789_101848252_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
ENSMUSG00000067562.12_101846569_101853556_2	chrX	+	1457	8	NNC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	44.698993277254	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGGTCTTCACTGTAACT	NA	False	NA	NA	False	AATAAA	-20	NA	101846568	101853556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_101846789_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
ENSMUSG00000067567.13_101328245_101548752_1	chrX	-	1723	11	FSM	ENSMUSG00000067567.13	ENSMUST00000087916.11	1936	11	213	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	12.0747670784989	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCGTCCCACCGCTCTGT	NA	False	NA	-1	True	AATAAA	-15	NA	101548752	101328244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_101328775_101351244_101351351_101446190_101446286_101449142_101449316_101471720_101471830_101472369_101472448_101476090_101476204_101541736_101541879_101543427_101543559_101548004_101548058_101548559
ENSMUSG00000067713.8_98710678_98729216_1	chr15	-	2009	12	NIC	ENSMUSG00000067713.8	novel	1652	12	NA	NA	119	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_11	100.554249163292	2252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTTGATTTCTGC	9535	False	NA	-4	True	ATTAAA	-22	NA	98729216	98710677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98728767
ENSMUSG00000067713.8_98710678_98729346_1	chr15	-	1594	12	NNC	ENSMUSG00000067713.8	novel	1652	12	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	107.952239209815	2241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTTGATTTCTGC	9405	False	NA	-4	True	ATTAAA	-22	NA	98729346	98710677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713616_98713752_98713867_98723568_98723615_98729310
ENSMUSG00000067713.8_98710872_98729346_1	chr15	-	1402	12	FSM	ENSMUSG00000067713.8	ENSMUST00000168846.3	1652	12	56	194	-11	-194	multi-exon	FALSE	canonical	3	244	junction_11	39.9075377622816	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGTTTCACTGTGTGGA	9405	False	NA	NA	False	NA	NA	NA	98729346	98710871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98729310
ENSMUSG00000067722.5_25403528_25404506_1	chr17	+	898	2	NNC	ENSMUSG00000067722.5	novel	3030	2	NA	NA	0	-2130	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2946	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTCAATTTTCTCACCT	NA	False	NA	11	True	AATACA	-16	NA	25403527	25404506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_25403615_25403695
ENSMUSG00000067722.5_25403528_25404506_2	chr17	+	900	2	FSM	ENSMUSG00000067722.5	ENSMUST00000088307.5	3030	2	0	2130	0	-2130	multi-exon	FALSE	canonical	3	314	junction_1	0	2988	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTCAATTTTCTCACCT	NA	False	NA	11	True	AATACA	-16	NA	25403527	25404506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25403615_25403693
ENSMUSG00000067764.12_72326975_72336599_1	chrX	-	1200	9	FSM	ENSMUSG00000067764.12	ENSMUST00000114503.9	1656	9	-17	473	-17	-473	multi-exon	FALSE	canonical	3	126	junction_7	127.059963698248	1230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72336599	72326974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72327390_72327485_72327591_72328811_72328911_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336481
ENSMUSG00000067764.12_72326975_72336599_2	chrX	-	1123	9	NNC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	-17	-473	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_8	149.667913645511	932	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72336599	72326974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72327390_72327485_72327591_72328811_72328911_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336558
ENSMUSG00000067764.12_72326975_72336599_3	chrX	-	1024	8	NNC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	-17	-473	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_7	157.992508218147	341	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72336599	72326974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72327390_72327485_72327591_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336558
ENSMUSG00000067764.12_72326975_72336599_4	chrX	-	1109	8	NNC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	-17	-473	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_7	168.160516125735	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72336599	72326974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72327390_72327485_72327591_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336473
ENSMUSG00000067764.12_72326975_72336599_5	chrX	-	1078	8	NNC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	-17	-473	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_7	166.663782287966	449	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72336599	72326974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72327390_72327485_72327591_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336504
ENSMUSG00000067768.13_72257939_72266059_1	chrX	+	1192	9	NIC	ENSMUSG00000067768.13	novel	1200	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	85	junction_1	78.4071903590481	1757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257938	72266059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_72258064_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
ENSMUSG00000067768.13_72257939_72266059_2	chrX	+	1203	9	NIC	ENSMUSG00000067768.13	novel	1200	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_2	106.011791796951	1258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257938	72266059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_72258088_72258379_72258463_72258846_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
ENSMUSG00000067847.14_155986153_155987717_1	chr2	+	375	3	FSM	ENSMUSG00000067847.14	ENSMUST00000088610.11	569	3	194	0	0	0	multi-exon	FALSE	canonical	3	748	junction_1	118.5	7895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCTATTTTTACCTAGTA	6545	False	NA	17	True	AATAAA	-22	NA	155986152	155987717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_155986201_155986378_155986510_155987521
ENSMUSG00000067851.12_10242960_10251223_1	chr1	-	819	5	ISM	ENSMUSG00000067851.12	ENSMUST00000088615.11	6978	38	51672	35164	-19692	340	internal_fragment	FALSE	canonical	3	126	junction_4	13.5092560861063	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTGTCTAACATGTTATA	NA	False	NA	NA	False	AATATA	-15	NA	10251223	10242959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_10243210_10243418_10243578_10244291_10244421_10250050_10250203_10251094
ENSMUSG00000067860.12_57076370_57081533_1	chrX	+	3196	3	FSM	ENSMUSG00000067860.12	ENSMUST00000088627.11	3949	3	367	386	0	-386	multi-exon	FALSE	canonical	3	194	junction_2	9.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTTGTTTGTTTTGTGATA	9867	False	NA	NA	False	ATTAAA	-19	NA	57076369	57081533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_57077598_57078721_57078886_57079729
ENSMUSG00000067860.12_57076370_57081993_1	chrX	+	3656	3	FSM	ENSMUSG00000067860.12	ENSMUST00000088627.11	3949	3	367	-74	0	74	multi-exon	FALSE	canonical	3	194	junction_2	9.5	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTAGAGAATTTCTGGTG	9867	False	NA	8	True	AATAAA	-18	NA	57076369	57081993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_57077598_57078721_57078886_57079729
ENSMUSG00000067873.12_56099258_56102568_1	chrX	+	1003	5	ISM	ENSMUSG00000067873.12	ENSMUST00000114751.9	1128	6	315	-2	0	2	3prime_fragment	FALSE	canonical	3	35	junction_4	215.852380111964	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCACTGGCTCACTTATGT	NA	False	NA	27	True	NA	NA	NA	56099257	56102568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56102250
ENSMUSG00000067916.10_147216495_147224527_1	chr4	+	493	3	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	0	-36702	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	28.5	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	147216494	147224527	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147216862_147219028_147219122_147224494
ENSMUSG00000067916.10_147216495_147263016_2	chr4	+	793	7	FSM	ENSMUSG00000067916.10	ENSMUST00000084149.10	2813	7	0	2020	0	1787	multi-exon	TRUE	canonical	1	2	junction_5	76.9805170156709	1530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	147216494	147263016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_147216647_147219028_147219122_147224494_147224577_147249797_147249844_147260303_147260362_147261203_147261331_147262781
ENSMUSG00000067916.10_147216495_147287258_1	chr4	+	549	4	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	0	22222	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	99.9911107160143	472	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATTGAAGGGGCTTTCGC	NA	False	NA	NA	False	NA	NA	NA	147216494	147287258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147216647_147219028_147219122_147224494_147224577_147287036
ENSMUSG00000067916.10_147233134_147263016_1	chr4	+	565	4	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-1817	1787	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	39.2626483512709	489	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	2765	False	NA	NA	False	AATACA	-2	NA	147233133	147263016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147233279_147260303_147260362_147261203_147261331_147262781
ENSMUSG00000067916.10_147233134_147263016_2	chr4	+	634	5	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-1817	1787	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	35.8503835404867	945	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	2765	False	NA	NA	False	AATACA	-2	NA	147233133	147263016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147233279_147249797_147249867_147260303_147260362_147261203_147261331_147262781
ENSMUSG00000067916.10_147233134_147263016_3	chr4	+	600	4	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-1817	1787	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	41.4916323558806	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	2765	False	NA	NA	False	AATACA	-2	NA	147233133	147263016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147233291_147260280_147260362_147261203_147261331_147262781
ENSMUSG00000067919.9_147056367_147142057_1	chr4	+	855	5	Fusion	ENSMUSG00000086147.3_ENSMUSG00000067919.9	novel	2295	5	NA	NA	-66	-3194	multi-exon	FALSE	canonical	3	25	junction_2	225.088316000631	1207	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGGTTTCTAGACAAAAC	NA	False	NA	NA	False	AATAAA	-14	NA	147056366	147142057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_147056575_147058404_147058498_147136962_147137048_147140055_147140183_147141715
ENSMUSG00000067919.9_147056420_147141824_1	chr4	+	569	5	Fusion	ENSMUSG00000086147.3_ENSMUSG00000067919.9	novel	2295	5	NA	NA	-13	-3427	multi-exon	FALSE	canonical	3	25	junction_2	225.088316000631	194	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCTTAGAAATGTGATCC	NA	False	NA	NA	False	NA	NA	NA	147056419	147141824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_147056575_147058404_147058498_147136962_147137048_147140055_147140183_147141715
ENSMUSG00000067919.9_147056420_147141977_1	chr4	+	722	5	Fusion	ENSMUSG00000086147.3_ENSMUSG00000067919.9	novel	2295	5	NA	NA	-13	-3274	multi-exon	FALSE	canonical	3	25	junction_2	225.088316000631	612	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCTTCTATCATTAGTC	NA	False	NA	NA	False	TATAAA	-21	NA	147056419	147141977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_147056575_147058404_147058498_147136962_147137048_147140055_147140183_147141715
ENSMUSG00000067919.9_147106307_147141977_1	chr4	+	795	6	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	0	-3274	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	254.496365396443	571	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCTTCTATCATTAGTC	2283	False	NA	NA	False	TATAAA	-21	NA	147106306	147141977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147106458_147107818_147107913_147115003_147115080_147136962_147137048_147140055_147140183_147141715
ENSMUSG00000067919.9_147106307_147141977_2	chr4	+	719	5	FSM	ENSMUSG00000067919.9	ENSMUST00000075775.6	3993	5	0	3274	0	-3274	multi-exon	FALSE	canonical	1	1	junction_2	279.904894562421	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCTTCTATCATTAGTC	2283	False	NA	NA	False	TATAAA	-21	NA	147106306	147141977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_147106458_147107818_147107913_147136962_147137048_147140055_147140183_147141715
ENSMUSG00000067931.7_21787270_21808961_1	chr17	+	2552	7	NNC	ENSMUSG00000067931.7	novel	2652	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	39.6880194629171	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCATGGAAAGATTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	21787269	21808961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_21787508_21789310_21789390_21794118_21794219_21803291_21803405_21805041_21805169_21806966_21807255_21807354
ENSMUSG00000067995.5_76134377_76248305_1	chr14	-	1452	7	NNC	ENSMUSG00000067995.5	novel	1467	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	207.983706626799	903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGATGGCAACTGTTATC	NA	False	NA	-17	True	AATAAA	-19	NA	76248305	76134376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_76135094_76144222_76144367_76155073_76155174_76186877_76186960_76232860_76233006_76245140_76245219_76248119
ENSMUSG00000067995.5_76134377_76248349_1	chr14	-	1518	7	NNC	ENSMUSG00000067995.5	novel	1467	8	NA	NA	-44	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	207.983706626799	1320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGATGGCAACTGTTATC	NA	False	NA	-17	True	AATAAA	-19	NA	76248349	76134376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_76135094_76144222_76144367_76155073_76155174_76186877_76186960_76232860_76233032_76245144_76245219_76248119
ENSMUSG00000067995.5_76134810_76248349_1	chr14	-	1063	7	NNC	ENSMUSG00000067995.5	novel	1467	8	NA	NA	-44	-433	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	207.983706626799	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAGATGTTATTTATAG	NA	False	NA	-4	True	CATAAA	-23	NA	76248349	76134809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_76135094_76144222_76144367_76155073_76155174_76186877_76186960_76232860_76233006_76245140_76245219_76248119
ENSMUSG00000067995.5_76134810_76248349_2	chr14	-	1085	7	NNC	ENSMUSG00000067995.5	novel	1467	8	NA	NA	-44	-433	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	207.983706626799	630	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAGATGTTATTTATAG	NA	False	NA	-4	True	CATAAA	-23	NA	76248349	76134809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_76135094_76144222_76144367_76155073_76155174_76186877_76186960_76232860_76233032_76245144_76245219_76248119
ENSMUSG00000068039.14_13130236_13134990_1	chr17	+	977	4	NIC	ENSMUSG00000068039.14	novel	329	3	NA	NA	-4352	-2011	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	5764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGCCGGCAGTACCTCGG	NA	False	NA	NA	False	NA	NA	NA	13130235	13134990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_13130637_13132656_13132889_13134524_13134712_13134833
ENSMUSG00000068039.14_13135362_13143443_1	chr17	+	1756	11	FSM	ENSMUSG00000068039.14	ENSMUST00000089024.13	1902	11	146	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	1038.79458989735	1562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	-1	True	ATTAAA	-14	NA	13135361	13143443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_13135517_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ENSMUSG00000068039.14_13135362_13143443_2	chr17	+	1842	12	FSM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	93	511	0	0	multi-exon	FALSE	canonical	3	3235	junction_8	179.622239047203	18615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	-1	True	ATTAAA	-14	NA	13135361	13143443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ENSMUSG00000068039.14_13135362_13162647_1	chr17	+	1843	13	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	0	18693	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_12	996.447450111311	7453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGGTTCCTGTCCTCA	NA	False	NA	2	True	ATTAAA	-16	NA	13135361	13162647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146_13143323_13162525
ENSMUSG00000068040.11_153003461_153050781_1	chr2	+	2053	18	FSM	ENSMUSG00000068040.11	ENSMUST00000089027.3	3896	18	238	1605	0	-1605	multi-exon	FALSE	canonical	3	350	junction_1	53.5920770883495	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGGCACAGTGTTCCTA	NA	False	NA	23	True	AATAAA	-27	NA	153003460	153050781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
ENSMUSG00000068040.11_153003461_153052386_1	chr2	+	3658	18	FSM	ENSMUSG00000068040.11	ENSMUST00000089027.3	3896	18	238	0	0	0	multi-exon	FALSE	canonical	3	350	junction_1	53.5920770883495	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAGGGTGCGGATTGAAG	NA	False	NA	41	True	AATAAA	-30	NA	153003460	153052386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
ENSMUSG00000068101.12_82117980_82128611_1	chr15	-	1274	5	FSM	ENSMUSG00000068101.12	ENSMUST00000230408.2	593	5	0	-681	0	0	multi-exon	FALSE	canonical	3	1067	junction_2	109.17045158833	2141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	82128611	82117979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333
ENSMUSG00000068101.12_82118280_82128611_1	chr15	-	882	4	ISM	ENSMUSG00000068101.12	ENSMUST00000089155.6	789	5	317	0	0	0	3prime_fragment	FALSE	canonical	3	56	junction_1	602.108148277552	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTTGTAGATGCAGA	NA	False	NA	-17	True	AAAAAG	-14	NA	82128611	82118279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_82118711_82124079_82124160_82125527_82125621_82128333
ENSMUSG00000068101.12_82118280_82128611_2	chr15	-	974	5	FSM	ENSMUSG00000068101.12	ENSMUST00000230408.2	593	5	0	-381	0	0	multi-exon	FALSE	canonical	3	1067	junction_2	109.17045158833	1903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTTGTAGATGCAGA	NA	False	NA	-17	True	AAAAAG	-14	NA	82128611	82118279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333
ENSMUSG00000068101.12_82118280_82128611_3	chr15	-	882	6	NIC	ENSMUSG00000068101.12	novel	1202	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_5	488.753271088798	1278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTTGTAGATGCAGA	NA	False	NA	-17	True	AAAAAG	-14	NA	82128611	82118279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128505
ENSMUSG00000068101.12_82118280_82128895_1	chr15	-	848	6	FSM	ENSMUSG00000068101.12	ENSMUST00000089157.11	1202	6	54	300	-21	0	multi-exon	FALSE	canonical	3	1067	junction_2	108.849253557386	4476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTTGTAGATGCAGA	NA	False	NA	-17	True	AAAAAG	-14	NA	82128895	82118279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128823
ENSMUSG00000068134.14_149958125_149978586_1	chr2	-	2286	4	FSM	ENSMUSG00000068134.14	ENSMUST00000089207.13	4127	4	42	1799	-10	951	multi-exon	FALSE	canonical	3	35	junction_1	10.2089285540757	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAATGGCGTACT	NA	False	NA	NA	False	NA	NA	NA	149978586	149958124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_149960121_149961484_149961549_149961744_149961872_149978487
ENSMUSG00000068134.14_149958728_149978586_1	chr2	-	1683	4	FSM	ENSMUSG00000068134.14	ENSMUST00000089207.13	4127	4	42	2402	-10	348	multi-exon	FALSE	canonical	3	35	junction_1	10.2089285540757	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTTGTGTATTTTAATAG	NA	False	NA	NA	False	NA	NA	NA	149978586	149958727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_149960121_149961484_149961549_149961744_149961872_149978487
ENSMUSG00000068134.14_149961041_149978586_1	chr2	-	734	3	FSM	ENSMUSG00000068134.14	ENSMUST00000142792.2	529	3	-10	-195	-10	195	multi-exon	FALSE	canonical	3	47	junction_1	6.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGGAACCCTTTAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	149978586	149961040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_149961549_149961744_149961872_149978487
ENSMUSG00000068184.8_108189123_108295018_1	chr13	-	506	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	252.741345054583	378	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295018	108189122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_108189215_108189247_108189489_108217886_108217928_108228067_108228158_108294976
ENSMUSG00000068184.8_108189123_108295125_10	chr13	-	621	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	252.741345054583	688	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295125	108189122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_108189222_108189246_108189489_108217886_108217928_108228067_108228158_108294976
ENSMUSG00000068184.8_108189123_108295125_12	chr13	-	613	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	252.741345054583	1318	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295125	108189122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_108189215_108189247_108189489_108217886_108217928_108228067_108228158_108294976
ENSMUSG00000068184.8_108189123_108295125_13	chr13	-	592	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	275.255676599049	310	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295125	108189122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_108189199_108189247_108189489_108217886_108217928_108228067_108228153_108294976
ENSMUSG00000068184.8_108189123_108295125_14	chr13	-	620	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	252.741345054583	3011	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295125	108189122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_108189214_108189239_108189489_108217886_108217928_108228067_108228158_108294976
ENSMUSG00000068184.8_108189123_108295125_2	chr13	-	590	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	252.741345054583	2079	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295125	108189122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_108189176_108189231_108189489_108217886_108217928_108228067_108228158_108294976
ENSMUSG00000068184.8_108189123_108295125_3	chr13	-	623	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	252.741345054583	1621	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295125	108189122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_108189192_108189214_108189489_108217886_108217928_108228067_108228158_108294976
ENSMUSG00000068184.8_108189123_108295125_4	chr13	-	573	4	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	3	21	junction_2	261.995334988155	337	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295125	108189122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_108189189_108189220_108189489_108228067_108228158_108294976
ENSMUSG00000068184.8_108189123_108295125_5	chr13	-	956	7	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	270.064601325107	236	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295125	108189122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_108189199_108189247_108189489_108202727_108202826_108215611_108215873_108217886_108217928_108228067_108228158_108294976
ENSMUSG00000068184.8_108189123_108295125_6	chr13	-	716	6	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	9	junction_3	267.174399971255	293	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295125	108189122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_108189189_108189220_108189489_108216835_108216938_108217886_108217928_108228067_108228158_108294976
ENSMUSG00000068184.8_108189123_108295125_7	chr13	-	613	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	252.741345054583	3191	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295125	108189122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_108189188_108189220_108189489_108217886_108217928_108228067_108228158_108294976
ENSMUSG00000068184.8_108189123_108295125_8	chr13	-	621	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	252.741345054583	2542	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295125	108189122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_108189199_108189223_108189489_108217886_108217928_108228067_108228158_108294976
ENSMUSG00000068184.8_108189123_108295125_9	chr13	-	616	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	252.741345054583	2052	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295125	108189122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_108189191_108189220_108189489_108217886_108217928_108228067_108228158_108294976
ENSMUSG00000068205.15_140237376_140262415_1	chr2	+	1072	4	FSM	ENSMUSG00000068205.15	ENSMUST00000043836.8	3552	4	21	2459	0	0	multi-exon	FALSE	canonical	3	66	junction_3	7.40870359029762	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGATTCCTGTTTATGCT	NA	False	NA	NA	False	AATAAA	-17	NA	140237375	140262415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_140237642_140242781_140242899_140260736_140260835_140261824
ENSMUSG00000068205.15_140237515_140262415_1	chr2	+	933	4	FSM	ENSMUSG00000068205.15	ENSMUST00000043836.8	3552	4	160	2459	0	0	multi-exon	FALSE	canonical	3	66	junction_3	7.40870359029762	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGATTCCTGTTTATGCT	NA	False	NA	NA	False	AATAAA	-17	NA	140237514	140262415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_140237642_140242781_140242899_140260736_140260835_140261824
ENSMUSG00000068220.7_78810926_78814396_1	chr15	+	530	4	FSM	ENSMUSG00000068220.7	ENSMUST00000089377.6	800	4	1	269	0	5	multi-exon	FALSE	canonical	3	1912	junction_2	63.4367576584918	12152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGCCCTTTCATGGGAGA	NA	False	NA	14	True	AATAAA	-25	NA	78810925	78814396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_78811005_78812169_78812250_78813832_78814005_78814197
ENSMUSG00000068245.15_59586181_59607998_1	chr14	-	1333	11	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5079	0	at_least_one_novel_splicesite	FALSE	canonical	3	278	junction_1	39.5924235176378	3868	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59607998	59586180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_59586501_59586670_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ENSMUSG00000068245.15_59586181_59607998_2	chr14	-	1503	10	NNC	ENSMUSG00000068245.15	novel	1130	10	NA	NA	-5079	0	intron_retention	FALSE	canonical	3	300	junction_3	34.2669260690571	4730	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59607998	59586180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ENSMUSG00000068245.15_59586181_59607998_3	chr14	-	1501	10	NNC	ENSMUSG00000068245.15	novel	1130	10	NA	NA	-5079	0	intron_retention	FALSE	non_canonical	0	0	junction_9	116.590557184925	4426	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59607998	59586180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607904
ENSMUSG00000068245.15_59586181_59607998_4	chr14	-	1331	11	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5079	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	111.176481325863	3652	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59607998	59586180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_59586501_59586670_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607904
ENSMUSG00000068245.15_59586181_59607998_5	chr14	-	1299	8	NNC	ENSMUSG00000068245.15	novel	1281	8	NA	NA	-5079	0	intron_retention	FALSE	canonical	3	27	junction_1	121.308175608191	487	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59607998	59586180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_59586838_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ENSMUSG00000068245.15_59586181_59607998_6	chr14	-	1261	10	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5079	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	109.915568045502	728	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59607998	59586180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_59586501_59586670_59586838_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ENSMUSG00000068245.15_59586181_59607998_7	chr14	-	1129	9	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5079	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	114.076728564594	440	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59607998	59586180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_59586501_59586670_59586838_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
ENSMUSG00000068250.14_149059081_149090195_1	chr6	-	1006	7	FSM	ENSMUSG00000068250.14	ENSMUST00000111535.8	1457	7	15	436	-2	0	multi-exon	FALSE	canonical	3	74	junction_5	14.7723465374402	969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTCTATTGTCCCATATT	NA	False	NA	-6	True	TATAAA	-24	NA	149090195	149059080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149090103
ENSMUSG00000068250.14_149059081_149090195_2	chr6	-	1140	7	NIC	ENSMUSG00000068250.14	novel	1369	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_6	33.0840680019183	920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTCTATTGTCCCATATT	NA	False	NA	-6	True	TATAAA	-24	NA	149090195	149059080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149089969
ENSMUSG00000068250.14_149059081_149090195_3	chr6	-	801	6	NNC	ENSMUSG00000068250.14	novel	1457	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	45.5165903819695	147	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTCTATTGTCCCATATT	NA	False	NA	-6	True	TATAAA	-24	NA	149090195	149059080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084963_149085037_149090103
ENSMUSG00000068250.14_149059081_149090195_4	chr6	-	873	6	NIC	ENSMUSG00000068250.14	novel	1457	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	34.1607962436475	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTCTATTGTCCCATATT	NA	False	NA	-6	True	TATAAA	-24	NA	149090195	149059080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149090103
ENSMUSG00000068250.14_149059081_149090195_5	chr6	-	728	5	NIC	ENSMUSG00000068250.14	novel	1457	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	42.3932482831877	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTCTATTGTCCCATATT	NA	False	NA	-6	True	TATAAA	-24	NA	149090195	149059080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149090103
ENSMUSG00000068264.12_131052344_131055434_1	chr2	+	1300	3	NNC	ENSMUSG00000068264.12	novel	1521	3	NA	NA	0	0	intron_retention	FALSE	non_canonical	3	28	junction_2	3.5	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTCTTTTTGTGCG	NA	False	NA	11	True	ATTAAA	-17	NA	131052343	131055434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_131052602_131054366_131055364_131055389
ENSMUSG00000068290.12_130495880_130506579_1	chr2	-	1243	9	NNC	ENSMUSG00000068290.12	novel	1238	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	130.411607995608	3172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGCCAGAAGTCCCACT	NA	False	NA	71	True	AATAAA	-18	NA	130506579	130495879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508_130500632_130503656_130503753_130503985_130504110_130505267_130505475_130506394
ENSMUSG00000068290.12_130495955_130506579_1	chr2	-	1162	9	NNC	ENSMUSG00000068290.12	novel	1238	9	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	170.568855231546	1658	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCTTGTTGTTTGTAGA	NA	False	NA	-4	True	ATTAAA	-16	NA	130506579	130495954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508_130500626_130503656_130503753_130503985_130504110_130505267_130505475_130506394
ENSMUSG00000068290.12_130495955_130506579_2	chr2	-	1163	9	NNC	ENSMUSG00000068290.12	novel	1238	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	164.633494465737	2188	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCTTGTTGTTTGTAGA	NA	False	NA	-4	True	ATTAAA	-16	NA	130506579	130495954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508_130500632_130503656_130503753_130503985_130504105_130505267_130505475_130506394
ENSMUSG00000068290.12_130495955_130506579_3	chr2	-	1168	9	NNC	ENSMUSG00000068290.12	novel	1238	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	130.411607995608	3116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCTTGTTGTTTGTAGA	NA	False	NA	-4	True	ATTAAA	-16	NA	130506579	130495954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508_130500632_130503656_130503753_130503985_130504110_130505267_130505475_130506394
ENSMUSG00000068323.13_83254375_83280739_1	chr6	+	1958	12	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	0	281	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_2	141.343845443047	542	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGCAAGTGGCCAGTGGT	5726	False	NA	12	True	AATAAA	-22	NA	83254374	83280739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_83254554_83256945_83257147_83262747_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
ENSMUSG00000068323.13_83254375_83280739_2	chr6	+	1787	11	NIC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	0	281	combination_of_known_junctions	FALSE	canonical	3	81	junction_2	130.075362770972	419	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGCAAGTGGCCAGTGGT	5726	False	NA	12	True	AATAAA	-22	NA	83254374	83280739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_83254554_83256945_83257147_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
ENSMUSG00000068323.13_83254375_83280739_3	chr6	+	1985	13	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	0	281	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_11	174.270144698779	545	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGCAAGTGGCCAGTGGT	5726	False	NA	12	True	AATAAA	-22	NA	83254374	83280739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83276591_83276676_83277452_83277521_83280307
ENSMUSG00000068328.10_83031712_83034663_1	chr6	+	1364	12	NNC	ENSMUSG00000068328.11	novel	1769	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	317.12207936872	330	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5423	False	NA	9	True	ATTAAA	-19	NA	83031711	83034663	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_83031814_83031891_83032030_83032109_83032192_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUSG00000068328.10_83031712_83034663_2	chr6	+	1659	11	NIC	ENSMUSG00000068328.11	novel	1265	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	960	junction_9	76.9269783626005	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5423	False	NA	9	True	ATTAAA	-19	NA	83031711	83034663	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_83031814_83031891_83032030_83032109_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUSG00000068328.10_83031712_83034663_3	chr6	+	1433	12	FSM	ENSMUSG00000068328.11	ENSMUST00000092618.10	1769	12	210	126	0	0	multi-exon	FALSE	canonical	3	960	junction_10	78.8006166859286	2360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5423	False	NA	9	True	ATTAAA	-19	NA	83031711	83034663	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUSG00000068329.13_83028247_83030941_1	chr6	-	1114	8	FSM	ENSMUSG00000068329.13	ENSMUST00000089645.13	1725	8	611	0	-75	0	multi-exon	FALSE	canonical	3	429	junction_7	63.5991913695225	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTTGGATCTTCTCC	2508	False	NA	2	True	AATAAA	-31	NA	83030941	83028246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593_83030799_83030901
ENSMUSG00000068329.13_83028247_83031423_1	chr6	-	1490	7	FSM	ENSMUSG00000068329.13	ENSMUST00000122955.8	1605	7	129	-14	0	0	multi-exon	FALSE	canonical	2	4	junction_3	204.724543933767	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTTGGATCTTCTCC	2026	False	NA	2	True	AATAAA	-31	NA	83031423	83028246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83030018_83030052_83030309_83030505_83030593_83030799_83030901
ENSMUSG00000068329.13_83028247_83031442_1	chr6	-	1538	8	NIC	ENSMUSG00000068329.13	novel	1725	8	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_4	183.177063888179	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTTGGATCTTCTCC	2007	False	NA	2	True	AATAAA	-31	NA	83031442	83028246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029708_83030018_83030052_83030309_83030505_83030593_83030799_83030901
ENSMUSG00000068329.13_83028247_83031442_2	chr6	-	1546	7	NIC	ENSMUSG00000068329.13	novel	1725	8	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	199.430578286168	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTTGGATCTTCTCC	2007	False	NA	2	True	AATAAA	-31	NA	83031442	83028246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_83028616_83028722_83028819_83029453_83029524_83029981_83030052_83030309_83030505_83030593_83030799_83030901
ENSMUSG00000068329.13_83028247_83031442_3	chr6	-	1849	7	NIC	ENSMUSG00000068329.13	novel	1725	8	NA	NA	-19	0	intron_retention	FALSE	canonical	3	429	junction_6	64.9095524557056	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTTGGATCTTCTCC	2007	False	NA	2	True	AATAAA	-31	NA	83031442	83028246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83030052_83030309_83030505_83030593_83030799_83030901
ENSMUSG00000068329.13_83031712_83034663_1	chr6	-	1631	11	NNC	ENSMUSG00000068329.13	novel	2512	7	NA	NA	-2409	-1584	intron_retention	FALSE	non_canonical	0	0	junction_1	0	153	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGGCCCCTGGGAAGGC	NA	False	NA	NA	False	NA	NA	NA	83034663	83031711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83031814_83031891_83032030_83032109_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033767_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUSG00000068329.13_83031712_83034663_2	chr6	-	1425	12	NNC	ENSMUSG00000068329.13	novel	2512	7	NA	NA	-2409	-1584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	928	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGGCCCCTGGGAAGGC	NA	False	NA	NA	False	NA	NA	NA	83034663	83031711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034264_83034376_83034478
ENSMUSG00000068329.13_83031712_83034663_3	chr6	-	1398	12	NIC	ENSMUSG00000068329.13	novel	2512	7	NA	NA	-2409	-1584	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGGCCCCTGGGAAGGC	NA	False	NA	NA	False	NA	NA	NA	83034663	83031711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_83031814_83031891_83031995_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUSG00000068329.13_83031712_83034663_4	chr6	-	1282	11	NIC	ENSMUSG00000068329.13	novel	2512	7	NA	NA	-2409	-1584	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGGCCCCTGGGAAGGC	NA	False	NA	NA	False	NA	NA	NA	83034663	83031711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_83031814_83031891_83032030_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUSG00000068329.13_83031712_83034663_5	chr6	-	1428	12	NNC	ENSMUSG00000068329.13	novel	2512	7	NA	NA	-2409	-1584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	996	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGGCCCCTGGGAAGGC	NA	False	NA	NA	False	NA	NA	NA	83034663	83031711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033744_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUSG00000068329.13_83031712_83034663_6	chr6	-	1405	12	NNC	ENSMUSG00000068329.13	novel	2512	7	NA	NA	-2409	-1584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	162	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGGCCCCTGGGAAGGC	NA	False	NA	NA	False	NA	NA	NA	83034663	83031711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033767_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUSG00000068329.13_83031712_83034663_7	chr6	-	1426	12	NNC	ENSMUSG00000068329.13	novel	2512	7	NA	NA	-2409	-1584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	724	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGGCCCCTGGGAAGGC	NA	False	NA	NA	False	NA	NA	NA	83034663	83031711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83031814_83031891_83032030_83032109_83032261_83032486_83032665_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUSG00000068329.13_83031712_83034663_8	chr6	-	1428	12	NNC	ENSMUSG00000068329.13	novel	2512	7	NA	NA	-2409	-1584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1620	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGGCCCCTGGGAAGGC	NA	False	NA	NA	False	NA	NA	NA	83034663	83031711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033117_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUSG00000068329.13_83031712_83034663_9	chr6	-	1425	12	NNC	ENSMUSG00000068329.13	novel	2512	7	NA	NA	-2409	-1584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	768	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGGCCCCTGGGAAGGC	NA	False	NA	NA	False	NA	NA	NA	83034663	83031711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83031814_83031891_83032030_83032109_83032253_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUSG00000068348.5_75107060_75110732_1	chr15	-	909	3	FSM	ENSMUSG00000068348.5	ENSMUST00000089689.5	408	3	-115	-386	-115	386	multi-exon	FALSE	canonical	3	72	junction_2	2	525	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAAGTCTCTGTTTTTCT	1237	False	NA	-5	True	AATAAA	-16	NA	75110732	75107059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75107668_75109440_75109558_75110548
ENSMUSG00000068348.5_75107060_75303463_1	chr15	-	973	3	Fusion	ENSMUSG00000053168.7_ENSMUSG00000068348.5	novel	408	3	NA	NA	110	386	multi-exon	FALSE	canonical	1	8	junction_2	34	586	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAAGTCTCTGTTTTTCT	NA	False	NA	-5	True	AATAAA	-16	NA	75303463	75107059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr15_-_75107668_75109440_75109558_75303215
ENSMUSG00000068417.9_51193598_51202208_1	chr14	+	1225	6	FSM	ENSMUSG00000068417.9	ENSMUST00000095925.5	1372	6	149	-2	-103	2	multi-exon	FALSE	canonical	2	7	junction_3	36.6911433454996	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTGCTTGTCTTGGTTCC	NA	False	NA	NA	False	NA	NA	NA	51193597	51202208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_51193686_51196971_51197142_51200561_51200666_51200846_51201023_51201135_51201327_51201712
ENSMUSG00000068523.13_146205645_146211303_1	chr3	+	477	3	NNC	ENSMUSG00000068523.13	novel	593	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1786.5	18090	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCTCCTTACTGATGT	NA	False	NA	2	True	AATAAA	-15	NA	146205644	146211303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_146205776_146209023_146209155_146211088
ENSMUSG00000068523.13_146205645_146211303_2	chr3	+	471	3	NNC	ENSMUSG00000068523.13	novel	593	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1828	13418	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCTCCTTACTGATGT	NA	False	NA	2	True	AATAAA	-15	NA	146205644	146211303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_146205776_146209014_146209140_146211088
ENSMUSG00000068523.13_146205645_146211303_3	chr3	+	480	3	NNC	ENSMUSG00000068523.13	novel	593	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1786.5	20172	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCTCCTTACTGATGT	NA	False	NA	2	True	AATAAA	-15	NA	146205644	146211303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_146205770_146209014_146209155_146211088
ENSMUSG00000068523.13_146205645_146211303_4	chr3	+	477	3	NNC	ENSMUSG00000068523.13	novel	593	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1786.5	4628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCTCCTTACTGATGT	NA	False	NA	2	True	AATAAA	-15	NA	146205644	146211303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_146205786_146209033_146209155_146211088
ENSMUSG00000068523.13_146205645_146211303_5	chr3	+	483	3	NNC	ENSMUSG00000068523.13	novel	593	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1786.5	13973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCTCCTTACTGATGT	NA	False	NA	2	True	AATAAA	-15	NA	146205644	146211303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_146205786_146209027_146209155_146211088
ENSMUSG00000068523.13_146205864_146211303_1	chr3	+	927	3	NNC	ENSMUSG00000068523.13	novel	593	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	103	junction_1	1735	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCTCCTTACTGATGT	NA	False	NA	2	True	AATAAA	-15	NA	146205863	146211303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_146206436_146209014_146209155_146211088
ENSMUSG00000068523.13_146205864_146211303_2	chr3	+	679	4	NNC	ENSMUSG00000068523.13	novel	593	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	1659.60042044932	518	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCTCCTTACTGATGT	NA	False	NA	2	True	AATAAA	-15	NA	146205863	146211303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_146206102_146206349_146206436_146209014_146209155_146211088
ENSMUSG00000068566.14_3339100_3346105_1	chr7	+	1012	3	FSM	ENSMUSG00000068566.14	ENSMUST00000096744.8	2813	3	41	1760	0	622	multi-exon	FALSE	canonical	3	335	junction_1	308.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGACGACTGGCGGTGTCCA	271	False	NA	NA	False	NA	NA	NA	3339099	3346105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3339156_3341727_3341816_3345237
ENSMUSG00000068566.14_3339100_3347730_1	chr7	+	2637	3	FSM	ENSMUSG00000068566.14	ENSMUST00000096744.8	2813	3	41	135	0	-108	multi-exon	FALSE	canonical	3	335	junction_1	308.5	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATATATTTTAATTTT	271	False	NA	13	True	NA	NA	NA	3339099	3347730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3339156_3341727_3341816_3345237
ENSMUSG00000068566.14_3339100_3347730_2	chr7	+	2607	4	NNC	ENSMUSG00000068566.14	novel	2813	3	NA	NA	0	-108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	394.295151715903	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATATATTTTAATTTT	271	False	NA	13	True	NA	NA	NA	3339099	3347730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_3339156_3341727_3341816_3345237_3346669_3346698
ENSMUSG00000068566.14_3339100_3347730_3	chr7	+	2769	4	NNC	ENSMUSG00000068566.14	novel	4027	3	NA	NA	0	-108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	400.600660120386	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATATATTTTAATTTT	271	False	NA	13	True	NA	NA	NA	3339099	3347730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_3339318_3341727_3341816_3345237_3346669_3346698
ENSMUSG00000068566.14_3339100_3347865_1	chr7	+	2742	4	NNC	ENSMUSG00000068566.14	novel	2813	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	394.295151715903	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	271	False	NA	14	True	AATATA	-8	NA	3339099	3347865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_3339156_3341727_3341816_3345237_3346669_3346698
ENSMUSG00000068566.14_3339100_3347865_2	chr7	+	2904	4	NNC	ENSMUSG00000068566.14	novel	4027	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	400.600660120386	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	271	False	NA	14	True	AATATA	-8	NA	3339099	3347865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_3339318_3341727_3341816_3345237_3346669_3346698
ENSMUSG00000068580.12_119002981_119039276_1	chr2	+	1004	11	NNC	ENSMUSG00000068580.12	novel	2008	11	NA	NA	-36117	-1745	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1807	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCCCAGGAGTCTGAGCG	5935	False	NA	NA	False	NA	NA	NA	119002980	119039276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_119003167_119009832_119009944_119010365_119010447_119010967_119011040_119011406_119011447_119014073_119014177_119014397_119014484_119016176_119016265_119016509_119016569_119016826_119016897_119039168
ENSMUSG00000068580.12_119002981_119039276_2	chr2	+	1014	11	NNC	ENSMUSG00000068580.12	novel	2008	11	NA	NA	-36117	-1745	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1817	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCCCAGGAGTCTGAGCG	5935	False	NA	NA	False	NA	NA	NA	119002980	119039276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_119003167_119009832_119009944_119010365_119010447_119010967_119011046_119011406_119011451_119014073_119014177_119014397_119014484_119016176_119016265_119016509_119016569_119016826_119016897_119039168
ENSMUSG00000068601.3_39377694_39397396_1	chr6	+	1388	4	NIC	ENSMUSG00000068601.3	novel	474	2	NA	NA	-19127	-440	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTCCGCAGGGCACCCGC	NA	False	NA	NA	False	NA	NA	NA	39377693	39397396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_39378359_39382664_39382895_39387021_39387151_39397032
ENSMUSG00000068663.15_10363241_10381419_1	chr16	+	814	3	FSM	ENSMUSG00000068663.15	ENSMUST00000130148.2	704	3	0	-110	0	110	multi-exon	FALSE	canonical	3	59	junction_1	9	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCATGGGTGTTTTGCCT	NA	False	NA	NA	False	ATTAAA	-19	NA	10363240	10381419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_10363507_10377884_10378014_10381000
ENSMUSG00000068663.15_10363273_10386514_1	chr16	+	766	4	ISM	ENSMUSG00000068663.15	ENSMUST00000038145.13	3730	21	0	127078	0	5205	5prime_fragment	FALSE	canonical	3	48	junction_3	11.9536140513607	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-17	NA	10363272	10386514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_10363507_10377884_10378014_10381000_10381135_10386245
ENSMUSG00000068686.13_103900194_103915165_1	chr2	+	651	4	FSM	ENSMUSG00000068686.13	ENSMUST00000129749.8	434	4	-42	-175	0	0	multi-exon	FALSE	canonical	3	21	junction_3	22.7596133534821	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGAGCCCACTTGCAGTT	NA	False	NA	NA	False	NA	NA	NA	103900193	103915165	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_103900265_103909202_103909282_103911341_103911444_103914766
ENSMUSG00000068732.6_108464984_108469782_1	chr3	-	1621	3	FSM	ENSMUSG00000068732.6	ENSMUST00000090546.6	2864	3	0	1243	0	-1243	multi-exon	FALSE	canonical	3	163	junction_1	15	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCTCCAGCAAGTTTT	5274	False	NA	NA	False	TATAAA	-22	NA	108469782	108464983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_108466277_108467502_108467635_108469586
ENSMUSG00000068739.14_108333928_108352514_1	chr3	-	1823	11	FSM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	0	1747	0	0	multi-exon	FALSE	canonical	3	2549	junction_7	105.882198692698	8882	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGCTTCCCCAGTCTCC	NA	False	NA	-39	True	AATAAA	-18	NA	108352514	108333927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
ENSMUSG00000068744.13_108291155_108295210_1	chr3	+	1401	8	FSM	ENSMUSG00000068744.13	ENSMUST00000090561.10	1686	8	0	285	0	-285	multi-exon	FALSE	canonical	3	329	junction_1	57.4402973103556	955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATCTGTCTCCTTCCATC	7032	False	NA	19	True	AATAAA	-15	NA	108291154	108295210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_108291243_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
ENSMUSG00000068744.13_108291155_108295210_2	chr3	+	1370	8	FSM	ENSMUSG00000068744.13	ENSMUST00000102629.8	1687	8	-20	337	0	-285	multi-exon	FALSE	canonical	3	155	junction_1	112.452983372553	937	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATCTGTCTCCTTCCATC	7032	False	NA	19	True	AATAAA	-15	NA	108291154	108295210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_108291212_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
ENSMUSG00000068749.10_108164495_108187290_1	chr3	+	986	9	FSM	ENSMUSG00000068749.10	ENSMUST00000090569.10	1239	9	253	0	253	0	multi-exon	FALSE	canonical	3	2544	junction_4	248.775972262194	26630	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTAATAGTCTGTGATC	NA	False	NA	11	True	AATAAA	-15	NA	108164494	108187290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_108164622_108169001_108169069_108172381_108172509_108173748_108173817_108175108_108175217_108175348_108175408_108176143_108176247_108179606_108179694_108187050
ENSMUSG00000068758.9_8114273_8119053_1	chr14	-	388	4	NIC	ENSMUSG00000068758.9	novel	1614	12	NA	NA	1089	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_3	14.1656862405839	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTTCCTGTGCTGCTATC	NA	False	NA	-2	True	AATAAA	-16	NA	8119053	8114272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_8114394_8114689_8114757_8117743_8117847_8118956
ENSMUSG00000068758.9_8114273_8119053_2	chr14	-	533	6	ISM	ENSMUSG00000068758.9	ENSMUST00000224877.2	1128	10	4292	-64	1089	0	3prime_fragment	FALSE	canonical	3	14	junction_5	8.60232526704263	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTTCCTGTGCTGCTATC	NA	False	NA	-2	True	AATAAA	-16	NA	8119053	8114272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8118795_8118826_8118956
ENSMUSG00000068758.9_8114273_8119789_1	chr14	-	700	5	NIC	ENSMUSG00000068758.9	novel	1614	12	NA	NA	353	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_4	12.5	250	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTTCCTGTGCTGCTATC	NA	False	NA	-2	True	AATAAA	-16	NA	8119789	8114272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8119495
ENSMUSG00000068758.9_8114273_8119789_3	chr14	-	585	4	NIC	ENSMUSG00000068758.9	novel	1614	12	NA	NA	353	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_3	13.2748718344933	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTTCCTGTGCTGCTATC	NA	False	NA	-2	True	AATAAA	-16	NA	8119789	8114272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_8114394_8114689_8114757_8117743_8117847_8119495
ENSMUSG00000068798.11_105635630_105708652_1	chr3	-	1360	8	FSM	ENSMUSG00000068798.11	ENSMUST00000090678.11	2407	8	0	1047	0	0	multi-exon	FALSE	canonical	3	409	junction_7	23.7667234354495	1502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATGGATGATTAAATTTT	NA	False	NA	40	True	ATTAAA	-9	NA	105708652	105635629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_105636281_105639271_105639388_105645070_105645215_105646829_105646971_105648661_105648719_105653219_105653289_105657560_105657645_105708554
ENSMUSG00000068798.11_105635767_105708652_1	chr3	-	1223	8	FSM	ENSMUSG00000068798.11	ENSMUST00000090678.11	2407	8	0	1184	0	-137	multi-exon	FALSE	canonical	3	409	junction_7	23.7667234354495	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTTGGAAAAATGGGTCT	NA	False	NA	-2	True	ATTAAA	-16	NA	105708652	105635766	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_105636281_105639271_105639388_105645070_105645215_105646829_105646971_105648661_105648719_105653219_105653289_105657560_105657645_105708554
ENSMUSG00000068823.11_102960214_102964448_1	chr3	+	757	5	ISM	ENSMUSG00000068823.11	ENSMUST00000198174.2	2584	14	9705	654	2897	0	3prime_fragment	FALSE	canonical	3	12063	junction_1	342.025583838402	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACAGTTGCAGCCTGGAA	NA	False	NA	32	True	AATAAA	-28	NA	102960213	102964448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ENSMUSG00000068823.11_102960214_102965123_1	chr3	+	1432	5	ISM	ENSMUSG00000068823.11	ENSMUST00000198174.2	2584	14	9705	-21	2897	3	3prime_fragment	FALSE	canonical	3	12063	junction_1	342.025583838402	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATCCTGTTTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	102960213	102965123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ENSMUSG00000068823.11_102960214_102965502_1	chr3	+	1811	5	ISM	ENSMUSG00000068823.11	ENSMUST00000198174.2	2584	14	9705	-400	2897	0	3prime_fragment	FALSE	canonical	3	12063	junction_1	342.025583838402	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	22	True	AATAAA	-25	NA	102960213	102965502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ENSMUSG00000068856.4_96079863_96084705_1	chr3	+	1525	6	FSM	ENSMUSG00000068856.4	ENSMUST00000076372.5	1915	6	215	175	0	-175	multi-exon	FALSE	canonical	3	1297	junction_3	204.272758829953	2678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTCTGGTGAAGTAACT	NA	False	NA	20	True	AATAAA	-16	NA	96079862	96084705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96079924_96080286_96080416_96080856_96081400_96081638_96081846_96083950_96084125_96084294
ENSMUSG00000068856.4_96079863_96084705_2	chr3	+	1507	6	NNC	ENSMUSG00000068856.4	novel	1915	6	NA	NA	0	-175	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_4	681.366450597621	2635	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTCTGGTGAAGTAACT	NA	False	NA	20	True	AATAAA	-16	NA	96079862	96084705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_96079924_96080286_96080416_96080856_96081400_96081638_96081828_96083950_96084125_96084294
ENSMUSG00000068856.4_96079863_96084880_1	chr3	+	1700	6	FSM	ENSMUSG00000068856.4	ENSMUST00000076372.5	1915	6	215	0	0	0	multi-exon	FALSE	canonical	3	1297	junction_3	204.272758829953	2717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGTGATGGGCACAGGG	NA	False	NA	NA	False	AATAAA	-21	NA	96079862	96084880	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96079924_96080286_96080416_96080856_96081400_96081638_96081846_96083950_96084125_96084294
ENSMUSG00000068860.6_95144231_95148361_1	chr3	-	928	3	FSM	ENSMUSG00000068860.6	ENSMUST00000107197.2	1289	3	548	-187	548	0	multi-exon	FALSE	canonical	3	16	junction_2	7.5	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCTTTTTTCCAGTAC	NA	False	NA	NA	False	AATAAA	-16	NA	95148361	95144230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95144541_95147260_95147423_95147905
ENSMUSG00000068860.6_95144418_95148361_1	chr3	-	741	3	FSM	ENSMUSG00000068860.6	ENSMUST00000107197.2	1289	3	548	0	548	0	multi-exon	FALSE	canonical	3	16	junction_2	7.5	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGGTCTCATTTTTCT	NA	False	NA	-1	True	AATATA	-21	NA	95148361	95144417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95144541_95147260_95147423_95147905
ENSMUSG00000068882.14_69691906_69701854_1	chr2	+	1725	12	FSM	ENSMUSG00000068882.14	ENSMUST00000090852.11	2001	12	0	276	0	0	multi-exon	FALSE	canonical	3	1543	junction_7	118.150135613357	6428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAATAGTTCTTTCTTCTT	NA	False	NA	14	True	TATAAA	-5	NA	69691905	69701854	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ENSMUSG00000068917.13_89076084_89084228_1	chr3	+	1590	11	ISM	ENSMUSG00000068917.13	ENSMUST00000090927.12	2128	13	3959	0	1613	0	3prime_fragment	FALSE	canonical	3	173	junction_1	112.080328336421	168	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCCCCAATCCCTGGAAT	NA	False	NA	18	True	AATAAA	-19	NA	89076083	89084228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_89076231_89076924_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ENSMUSG00000068917.13_89077597_89084228_1	chr3	+	1294	8	ISM	ENSMUSG00000068917.13	ENSMUST00000128318.8	1885	12	5311	0	-1875	0	3prime_fragment	FALSE	canonical	3	409	junction_7	61.9789299286624	137	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCCCCAATCCCTGGAAT	NA	False	NA	18	True	AATAAA	-19	NA	89077596	89084228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
ENSMUSG00000068921.15_88830748_88857258_1	chr3	-	1659	13	FSM	ENSMUSG00000068921.15	ENSMUST00000090938.11	4760	13	463	2638	0	194	multi-exon	FALSE	canonical	3	805	junction_4	46.7537134591705	3329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTTTGTACTTTGATT	NA	False	NA	NA	False	NA	NA	NA	88857258	88830747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
ENSMUSG00000068921.15_88830942_88857258_1	chr3	-	1465	13	FSM	ENSMUSG00000068921.15	ENSMUST00000090938.11	4760	13	463	2832	0	0	multi-exon	FALSE	canonical	3	805	junction_4	46.7537134591705	3226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88857258	88830941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
ENSMUSG00000068921.15_88830942_88857258_2	chr3	-	1306	12	NIC	ENSMUSG00000068921.15	novel	1375	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_4	248.823878102664	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88857258	88830941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
ENSMUSG00000068921.15_88830942_88858439_1	chr3	-	1553	13	FSM	ENSMUSG00000068921.15	ENSMUST00000173135.8	1409	13	49	-193	-23	0	multi-exon	FALSE	canonical	0	0	junction_12	248.441964495176	1373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88858439	88830941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858267
ENSMUSG00000068921.15_88830942_88858439_2	chr3	-	1645	13	NIC	ENSMUSG00000068921.15	novel	4760	13	NA	NA	-23	0	intron_retention	FALSE	canonical	3	11	junction_12	245.456151322843	1383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88858439	88830941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858175
ENSMUSG00000068921.15_88830942_88858488_1	chr3	-	1422	13	NNC	ENSMUSG00000068921.15	novel	1409	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_12	242.742948175408	1274	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88858488	88830941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858447
ENSMUSG00000068921.15_88836486_88857258_1	chr3	-	895	7	ISM	ENSMUSG00000068921.15	ENSMUST00000107491.11	1375	12	0	5544	0	264	5prime_fragment	FALSE	canonical	3	827	junction_2	41.8728233265125	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCTGAGAAAACCTTGAAT	NA	False	NA	NA	False	AATAAA	-22	NA	88857258	88836485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
ENSMUSG00000068921.15_88836589_88857258_1	chr3	-	792	7	ISM	ENSMUSG00000068921.15	ENSMUST00000107491.11	1375	12	0	5647	0	161	5prime_fragment	FALSE	canonical	3	827	junction_2	41.8728233265125	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTCCTATTTATGGCT	NA	False	NA	NA	False	AATAAA	-15	NA	88857258	88836588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
ENSMUSG00000068964.6_31445779_31446977_1	chr15	-	1075	2	Genic_Genomic	ENSMUSG00000068964.6	novel	435	1	NA	NA	-14	750	multi-exon	FALSE	non_canonical	0	0	junction_1	0	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACTTCCTCTAGCTCAGT	6652	False	NA	NA	False	AATAAA	-43	NA	31446977	31445778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_-_31446680_31446803
ENSMUSG00000068964.6_31445779_31446977_2	chr15	-	1073	2	Genic_Genomic	ENSMUSG00000068964.6	novel	435	1	NA	NA	-14	750	multi-exon	FALSE	non_canonical	2	102	junction_1	0	1079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACTTCCTCTAGCTCAGT	6652	False	NA	NA	False	AATAAA	-43	NA	31446977	31445778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_-_31446673_31446798
ENSMUSG00000068964.6_31445779_31446977_3	chr15	-	1073	2	Genic_Genomic	ENSMUSG00000068964.6	novel	435	1	NA	NA	-14	750	multi-exon	FALSE	non_canonical	0	0	junction_1	0	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACTTCCTCTAGCTCAGT	6652	False	NA	NA	False	AATAAA	-43	NA	31446977	31445778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_-_31446680_31446805
ENSMUSG00000068964.6_31445779_31446977_4	chr15	-	1068	2	Genic_Genomic	ENSMUSG00000068964.6	novel	435	1	NA	NA	-14	750	multi-exon	FALSE	non_canonical	0	0	junction_1	0	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACTTCCTCTAGCTCAGT	6652	False	NA	NA	False	AATAAA	-43	NA	31446977	31445778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_-_31446663_31446793
ENSMUSG00000069020.10_29717407_29734076_1	chr2	+	1205	5	FSM	ENSMUSG00000069020.10	ENSMUST00000091142.4	2196	5	53	938	0	0	multi-exon	FALSE	canonical	3	254	junction_1	41.2158949921023	2844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGTTTACTAGCCTTGCT	NA	False	NA	14	True	AATAAA	-16	NA	29717406	29734076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29717448_29722703_29722775_29731413_29731496_29732732_29732782_29733114
ENSMUSG00000069020.10_29717407_29734076_2	chr2	+	1199	5	NNC	ENSMUSG00000069020.10	novel	2196	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	141.749779541275	2802	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGTTTACTAGCCTTGCT	NA	False	NA	14	True	AATAAA	-16	NA	29717406	29734076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_29717448_29722703_29722775_29731413_29731496_29732732_29732782_29733120
ENSMUSG00000069041.9_40663285_40680024_1	chr3	+	1625	6	FSM	ENSMUSG00000069041.9	ENSMUST00000091184.9	2128	6	0	503	0	-503	multi-exon	FALSE	canonical	3	17	junction_3	1.93907194296653	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAATGAGCCTTTTTCCC	NA	False	NA	NA	False	AATAAA	-16	NA	40663284	40680024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_40663657_40670945_40671074_40674920_40675039_40675936_40676092_40677055_40677182_40679298
ENSMUSG00000069089.9_100839258_100867413_1	chr13	-	1835	12	FSM	ENSMUSG00000069089.9	ENSMUST00000091299.8	1988	12	34	119	-5	-119	multi-exon	FALSE	canonical	3	644	junction_3	44.8636133370117	6428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATACTATTGCTTTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	100867413	100839257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
ENSMUSG00000069089.9_100839818_100867413_1	chr13	-	1275	12	FSM	ENSMUSG00000069089.9	ENSMUST00000091299.8	1988	12	34	679	-5	0	multi-exon	FALSE	canonical	3	644	junction_3	44.8636133370117	6139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGATTTATGATTAGAG	NA	False	NA	-29	True	AATAAA	-3	NA	100867413	100839817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
ENSMUSG00000069089.9_100839818_100867413_2	chr13	-	1045	10	NIC	ENSMUSG00000069089.9	novel	1159	11	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	42	junction_5	228.326006911387	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGATTTATGATTAGAG	NA	False	NA	-29	True	AATAAA	-3	NA	100867413	100839817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
ENSMUSG00000069089.9_100839818_100867413_3	chr13	-	1173	10	NIC	ENSMUSG00000069089.9	novel	1988	12	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_8	235.310564421564	1055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGATTTATGATTAGAG	NA	False	NA	-29	True	AATAAA	-3	NA	100867413	100839817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100866965_100867026_100867281
ENSMUSG00000069089.9_100839921_100867413_1	chr13	-	1172	12	FSM	ENSMUSG00000069089.9	ENSMUST00000091299.8	1988	12	34	782	-5	-103	multi-exon	FALSE	canonical	3	644	junction_3	44.8636133370117	2703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGAATATTAAATGCTAT	NA	False	NA	-132	True	AATAAA	-28	NA	100867413	100839920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
ENSMUSG00000069135.12_8384372_8385229_1	chr17	+	633	2	ISM	ENSMUSG00000069135.12	ENSMUST00000162586.2	1159	7	20	9684	0	-9684	5prime_fragment	FALSE	canonical	3	414	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGTGAGACCTGAATGTT	NA	False	NA	NA	False	AAAAAG	-4	NA	8384371	8385229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_8384531_8384755
ENSMUSG00000069135.12_8384372_8388941_1	chr17	+	461	5	ISM	ENSMUSG00000069135.12	ENSMUST00000162586.2	1159	7	20	5972	0	-5972	5prime_fragment	FALSE	canonical	3	314	junction_3	36.8128713903167	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCAACAGAAAGAAAAAGGAC	NA	False	NA	NA	False	NA	NA	NA	8384371	8388941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837
ENSMUSG00000069206.15_67590027_67599752_1	chr13	-	1841	5	FSM	ENSMUSG00000069206.15	ENSMUST00000223682.2	483	5	-31	-1327	-9	347	multi-exon	FALSE	canonical	3	19	junction_1	43.3618495915476	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGAGCTTACATTCCA	9929	False	NA	NA	False	AAGAAA	-28	NA	67599752	67590026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_67591454_67595482_67595552_67596939_67597036_67597468_67597596_67599630
ENSMUSG00000069208.10_74627649_74642089_1	chr13	-	2054	5	FSM	ENSMUSG00000069208.10	ENSMUST00000221173.2	1549	5	22	-527	0	524	multi-exon	FALSE	canonical	3	27	junction_3	20.0546129356814	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCTCCAGTTACT	NA	False	NA	NA	False	ATTAAA	-21	NA	74642089	74627648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_74629270_74630657_74630719_74630935_74631063_74632017_74632142_74641968
ENSMUSG00000069223.11_55875181_55924643_2	chr13	-	546	4	NIC	ENSMUSG00000069223.11	novel	440	3	NA	NA	7649	47768	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	696	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGCTGCCCGGCGTGCTGC	NA	False	NA	NA	False	NA	NA	NA	55924643	55875180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_55875288_55880748_55880881_55923179_55923261_55924417
ENSMUSG00000069520.7_115178309_115198129_1	chr10	-	1209	7	NIC	ENSMUSG00000069520.7	novel	3012	7	NA	NA	0	1339	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	66.9842435867487	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCAGCTCCTCCCGTGTTC	NA	False	NA	NA	False	AATAAA	-18	NA	115198129	115178308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197811_115197865_115197956
ENSMUSG00000069520.7_115178309_115198129_2	chr10	-	1399	6	FSM	ENSMUSG00000069520.7	ENSMUST00000217887.2	3084	6	23	1662	0	1339	multi-exon	FALSE	canonical	3	189	junction_4	16.3291151015602	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCAGCTCCTCCCGTGTTC	NA	False	NA	NA	False	AATAAA	-18	NA	115198129	115178308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713
ENSMUSG00000069520.7_115178309_115198398_1	chr10	-	1241	7	NIC	ENSMUSG00000069520.7	novel	3012	7	NA	NA	0	1339	combination_of_known_junctions	FALSE	canonical	3	22	junction_6	71.1213751273132	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCAGCTCCTCCCGTGTTC	NA	False	NA	NA	False	AATAAA	-18	NA	115198398	115178308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115198291
ENSMUSG00000069565.13_80100908_80123909_1	chr10	+	1658	12	FSM	ENSMUSG00000069565.13	ENSMUST00000105362.8	2081	12	90	333	0	182	multi-exon	FALSE	canonical	3	848	junction_9	77.3423216017195	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTACAATGTATACTGG	NA	False	NA	19	True	AATATA	-32	NA	80100907	80123909	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113408_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120384_80121083_80121261_80123372
ENSMUSG00000069631.15_106054156_106084362_1	chr11	-	2033	11	NIC	ENSMUSG00000069631.15	novel	2099	13	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	3	51	junction_9	25.5305699113827	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGGAATGGCACCAGTG	NA	False	NA	-13	True	ATTAAA	-13	NA	106084362	106054155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106077926_106078007_106084291
ENSMUSG00000069633.13_3508816_3517648_1	chr8	-	1127	5	FSM	ENSMUSG00000069633.13	ENSMUST00000004686.13	2870	5	32	1711	-3	-1708	multi-exon	FALSE	canonical	3	21	junction_1	4.14578098794425	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGTGTGCATGAGGTGA	NA	False	NA	-1	True	ATTAAA	-17	NA	3517648	3508815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_3509435_3510271_3510335_3513921_3514101_3515782_3515972_3517571
ENSMUSG00000069678.11_83055327_83057836_2	chr6	+	902	8	NNC	ENSMUSG00000069678.11	novel	918	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	65.6608478377755	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCATCTTCCTTCTTAC	106	False	NA	24	True	AATAAA	-16	NA	83055326	83057836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_83055460_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056745_83057034_83057122_83057530_83057612_83057690
ENSMUSG00000069678.11_83055371_83057836_1	chr6	+	866	9	NNC	ENSMUSG00000069678.11	novel	918	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	65.2322772866317	549	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCATCTTCCTTCTTAC	150	False	NA	24	True	AATAAA	-16	NA	83055370	83057836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_83055460_83055875_83055982_83056096_83056250_83056422_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
ENSMUSG00000069727.6_42337665_42342191_1	chr7	-	1261	2	NIC	ENSMUSG00000069727.6	novel	1380	3	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTCCCAGGATGGCACCA	NA	False	NA	NA	False	AATAAA	-22	NA	42342191	42337664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_42338809_42342074
ENSMUSG00000069727.6_42338426_42342191_1	chr7	-	500	2	NIC	ENSMUSG00000069727.6	novel	1380	3	NA	NA	-25	-761	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGATGTATCTGTCAAGAG	NA	False	NA	NA	False	NA	NA	NA	42342191	42338425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_42338809_42342074
ENSMUSG00000069743.6_22038865_22064740_1	chr17	-	687	5	FSM	ENSMUSG00000069743.6	ENSMUST00000084141.6	3686	5	0	2999	0	-2016	multi-exon	FALSE	canonical	3	21	junction_3	11.3880419739304	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATACTATGGTACAGAGCT	NA	False	NA	NA	False	AAGAAA	-5	NA	22064740	22038864	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_22039170_22040050_22040178_22042824_22042873_22059604_22059696_22064624
ENSMUSG00000069744.8_97594260_97604327_1	chr11	+	725	6	NNC	ENSMUSG00000069744.8	novel	766	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	2	41	junction_4	1565.2866830073	7090	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGCCTGCCTTTG	NA	False	NA	23	True	AATAAA	-16	NA	97594259	97604327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97594317_97594613_97594799_97597623_97597732_97601927_97602106_97603269_97603358_97604218
ENSMUSG00000069744.8_97594260_97604327_2	chr11	+	727	6	NNC	ENSMUSG00000069744.8	novel	766	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1615.9615094426	7896	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGCCTGCCTTTG	NA	False	NA	23	True	AATAAA	-16	NA	97594259	97604327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97594317_97594618_97594799_97597623_97597732_97601927_97602106_97603262_97603358_97604218
ENSMUSG00000069744.8_97594260_97604327_3	chr11	+	727	6	NNC	ENSMUSG00000069744.8	novel	766	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1633.22985522553	11409	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGCCTGCCTTTG	NA	False	NA	23	True	AATAAA	-16	NA	97594259	97604327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97594317_97594613_97594799_97597623_97597732_97601927_97602106_97603262_97603353_97604218
ENSMUSG00000069744.8_97594260_97604327_4	chr11	+	624	5	NIC	ENSMUSG00000069744.8	novel	766	6	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	2	2	junction_2	1777.60743346218	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGCCTGCCTTTG	NA	False	NA	23	True	AATAAA	-16	NA	97594259	97604327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_97594317_97594613_97594799_97601927_97602106_97603262_97603358_97604218
ENSMUSG00000069744.8_97594260_97604327_5	chr11	+	721	6	NNC	ENSMUSG00000069744.8	novel	766	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1633.60746815139	5111	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGCCTGCCTTTG	NA	False	NA	23	True	AATAAA	-16	NA	97594259	97604327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97594317_97594613_97594788_97597623_97597732_97601927_97602106_97603262_97603358_97604218
ENSMUSG00000069744.8_97594260_97604327_7	chr11	+	721	6	NNC	ENSMUSG00000069744.8	novel	766	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1633.22985522553	3932	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGCCTGCCTTTG	NA	False	NA	23	True	AATAAA	-16	NA	97594259	97604327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97594317_97594613_97594799_97597623_97597732_97601927_97602106_97603262_97603347_97604218
ENSMUSG00000069744.8_97594260_97604327_8	chr11	+	554	5	NIC	ENSMUSG00000069744.8	novel	766	6	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	26	junction_3	1694.05740752786	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGCCTGCCTTTG	NA	False	NA	23	True	AATAAA	-16	NA	97594259	97604327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_97594317_97594613_97594799_97597623_97597732_97603262_97603358_97604218
ENSMUSG00000069744.8_97594260_97604327_9	chr11	+	720	6	NNC	ENSMUSG00000069744.8	novel	766	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1622.55963218613	10041	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGCCTGCCTTTG	NA	False	NA	23	True	AATAAA	-16	NA	97594259	97604327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97594317_97594613_97594799_97597623_97597720_97601927_97602106_97603262_97603358_97604218
ENSMUSG00000069744.8_97602601_97604327_1	chr11	+	284	3	NNC	ENSMUSG00000069744.8	novel	578	2	NA	NA	-287	1	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_1	1930.5	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGCCTGCCTTTG	4087	False	NA	23	True	AATAAA	-16	NA	97602600	97604327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97602681_97603262_97603358_97604218
ENSMUSG00000069805.11_63012567_63035941_1	chr13	-	1324	7	FSM	ENSMUSG00000069805.11	ENSMUST00000092888.11	1479	7	155	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	4.93288286231625	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTCTTTAGTGCGTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	63035941	63012566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_63012982_63015152_63015273_63016795_63016934_63018979_63019121_63020503_63020597_63022962_63023126_63035687
ENSMUSG00000069808.14_76101397_76108343_1	chr11	+	3393	2	NIC	ENSMUSG00000069808.14	novel	4179	3	NA	NA	8470	2690	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCCTAGTCCAAGGCCGC	NA	False	NA	NA	False	NA	NA	NA	76101396	76108343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_76104750_76108303
ENSMUSG00000069833.14_8966648_9054278_1	chr19	+	1041	6	FSM	ENSMUSG00000069833.14	ENSMUST00000092955.11	830	6	-11	-200	0	0	multi-exon	FALSE	canonical	3	34	junction_5	17.6703140888893	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGTTCTGTGATCACC	NA	False	NA	13	True	AATAAA	-14	NA	8966647	9054278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_9014522_9014623_9053939
ENSMUSG00000069844.13_66943496_66955728_1	chr11	+	1742	6	FSM	ENSMUSG00000069844.13	ENSMUST00000092996.5	2412	6	0	670	0	-429	multi-exon	FALSE	canonical	3	241	junction_2	26.3469163281019	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGACAAGCATGGCTTTG	NA	False	NA	9	True	AATAAA	-21	NA	66943495	66955728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_66943743_66944600_66944692_66946556_66946755_66947340_66947434_66949152_66949269_66954731
ENSMUSG00000069895.5_110459938_110464361_1	chr8	-	661	4	FSM	ENSMUSG00000069895.5	ENSMUST00000212726.2	461	4	10	-210	-7	210	multi-exon	FALSE	canonical	3	22	junction_3	4.32049379893857	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTTAATGTAGCGTCTT	NA	False	NA	NA	False	NA	NA	NA	110464361	110459937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_110460375_110461936_110461996_110462091_110462158_110464262
ENSMUSG00000069895.5_110461795_110464361_1	chr8	-	300	2	ISM	ENSMUSG00000069895.5	ENSMUST00000212605.2	7439	3	-7	8708	-7	-1647	5prime_fragment	FALSE	canonical	3	17	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTTTCTGATTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	110464361	110461794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_110461996_110464262
ENSMUSG00000069899.4_45942181_45943175_1	chr11	-	618	2	NNC	ENSMUSG00000069899.4	novel	784	2	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	0	267	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGACAGAGAGAGAGAGAA	1760	False	NA	NA	False	AATAAA	-30	NA	45943175	45942180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_45942682_45943058
ENSMUSG00000070003.8_71050141_71050884_1	chr8	-	415	3	ISM	ENSMUSG00000070003.8	ENSMUST00000211134.2	1549	16	10068	-2	244	0	3prime_fragment	FALSE	canonical	3	428	junction_1	321	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGGTACTGCTGATGTC	NA	False	NA	-11	True	AATAAA	-16	NA	71050884	71050140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_71050419_71050662_71050771_71050855
ENSMUSG00000070283.5_108437669_108442772_1	chr9	-	1663	14	NIC	ENSMUSG00000070283.5	novel	1487	5	NA	NA	1144	5067	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	13975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTCTGCCGTCCGGACCG	10004	False	NA	NA	False	NA	NA	NA	108442772	108437668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ENSMUSG00000070283.5_108437669_108442772_2	chr9	-	1658	14	NNC	ENSMUSG00000070283.5	novel	1487	5	NA	NA	1144	5067	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3236	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTCTGCCGTCCGGACCG	10004	False	NA	NA	False	NA	NA	NA	108442772	108437668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442305_108442445_108442525_108442610_108442696
ENSMUSG00000070283.5_108437669_108442772_3	chr9	-	1657	14	NNC	ENSMUSG00000070283.5	novel	1487	5	NA	NA	1144	5067	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3422	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTCTGCCGTCCGGACCG	10004	False	NA	NA	False	NA	NA	NA	108442772	108437668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440529_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ENSMUSG00000070283.5_108437669_108442772_4	chr9	-	1735	15	NIC	ENSMUSG00000070283.5	novel	1487	5	NA	NA	1144	5067	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTCTGCCGTCCGGACCG	10004	False	NA	NA	False	NA	NA	NA	108442772	108437668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441111_108441184_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ENSMUSG00000070284.11_107926488_107928901_1	chr9	+	1439	10	NNC	ENSMUSG00000070284.11	novel	1429	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	37.1167660362221	237	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGACTGGAAGTCAAGC	NA	False	NA	29	True	NA	NA	NA	107926487	107928901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_107926594_107926710_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
ENSMUSG00000070284.11_107926488_107928901_2	chr9	+	1556	9	FSM	ENSMUSG00000070284.11	ENSMUST00000112295.9	2702	9	47	1099	0	0	multi-exon	FALSE	canonical	3	94	junction_7	12.9807549857472	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGACTGGAAGTCAAGC	NA	False	NA	29	True	NA	NA	NA	107926487	107928901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
ENSMUSG00000070284.11_107926488_107929116_1	chr9	+	1771	9	FSM	ENSMUSG00000070284.11	ENSMUST00000112295.9	2702	9	47	884	0	1	multi-exon	FALSE	canonical	3	94	junction_7	12.9807549857472	836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCAGTCCTTGTTGTTCA	NA	False	NA	11	True	NA	NA	NA	107926487	107929116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
ENSMUSG00000070284.11_107926488_107929116_2	chr9	+	1680	10	FSM	ENSMUSG00000070284.11	ENSMUST00000047947.9	1429	10	-36	-215	0	1	multi-exon	FALSE	canonical	3	24	junction_1	31.8309578326385	611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCAGTCCTTGTTGTTCA	NA	False	NA	11	True	NA	NA	NA	107926487	107929116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_107926620_107926710_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
ENSMUSG00000070291.5_78321038_78330871_1	chr9	+	1062	9	ISM	ENSMUSG00000070291.5	ENSMUST00000113367.2	2207	17	17979	-2	17979	2	3prime_fragment	FALSE	canonical	3	56	junction_1	10.4813823038758	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTTGAAATTTTTTATG	NA	False	NA	4	True	AATAAA	-15	NA	78321037	78330871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_78321167_78321505_78321607_78323944_78324033_78325318_78325447_78325614_78325725_78326493_78326633_78327870_78327959_78328979_78329121_78330733
ENSMUSG00000070315.13_35035708_35087289_1	chr9	+	1056	5	Genic_Genomic	ENSMUSG00000070315.13	novel	639	3	NA	NA	6217	45071	multi-exon	FALSE	non_canonical	0	0	junction_1	0	567	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCACGAAGAAGCCTCCGC	NA	False	NA	NA	False	NA	NA	NA	35035707	35087289	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_35036141_35037602_35037714_35040756_35040871_35082372_35082548_35087066
ENSMUSG00000070315.13_35035708_35087289_2	chr9	+	1202	6	Genic_Genomic	ENSMUSG00000070315.13	novel	639	3	NA	NA	6217	45071	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3380	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCACGAAGAAGCCTCCGC	NA	False	NA	NA	False	NA	NA	NA	35035707	35087289	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_35036141_35037602_35037714_35040756_35040871_35047639_35047786_35082372_35082548_35087066
ENSMUSG00000070348.6_144486217_144493606_1	chr7	-	1257	5	NNC	ENSMUSG00000070348.6	novel	3740	5	NA	NA	0	718	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	163.518347594391	403	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGTTGTTTTTCCTTAA	NA	False	NA	-4	True	NA	NA	NA	144493606	144486216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_144486575_144487752_144487902_144491030_144491191_144491623_144491840_144493232
ENSMUSG00000070371.12_127531810_127534651_1	chr7	-	1136	5	NIC	ENSMUSG00000070371.12	novel	1016	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_3	30.0863341070327	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534651	127531809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_127532287_127532542_127532665_127532738_127533005_127533561_127533800_127534618
ENSMUSG00000070371.12_127531810_127534651_2	chr7	-	1278	6	NIC	ENSMUSG00000070371.12	novel	3028	15	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	18	junction_4	32.2093154227158	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534651	127531809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_127532287_127532542_127532665_127532738_127533005_127533310_127533453_127533561_127533800_127534618
ENSMUSG00000070372.12_104747858_104771716_1	chr3	-	527	4	ISM	ENSMUSG00000070372.12	ENSMUST00000195912.2	360	6	0	6404	0	-654	5prime_fragment	FALSE	canonical	3	1298	junction_3	99.5199589138893	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAATCTTCTTTCTGG	9278	False	NA	NA	False	NA	NA	NA	104771716	104747857	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_104748208_104749976_104750029_104752233_104752298_104771655
ENSMUSG00000070385.13_103006207_103007033_1	chr3	+	424	2	ISM	ENSMUSG00000070385.13	ENSMUST00000177250.2	751	6	4441	-11	4441	3	3prime_fragment	FALSE	canonical	3	22	junction_1	0	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACACCGCGAGTGGGTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	103006206	103007033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_103006453_103006855
ENSMUSG00000070394.11_69729381_69730441_1	chr11	+	436	3	NNC	ENSMUSG00000070394.11	novel	603	3	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	764.5	4953	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTTGGTGTCTTTATTC	NA	False	NA	NA	False	ATTAAA	-18	NA	69729380	69730441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_69729486_69730013_69730095_69730191
ENSMUSG00000070425.14_101714965_101731829_2	chr7	+	1839	11	FSM	ENSMUSG00000099481.7	ENSMUST00000094130.4	2298	11	0	459	0	31	multi-exon	FALSE	canonical	3	50	junction_1	17.4482090771517	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAGTGAATGAGTCTTGA	NA	False	NA	4	True	TATAAA	-18	NA	101714964	101731829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_101715012_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
ENSMUSG00000070426.13_101669339_101714341_1	chr7	-	1073	8	NNC	ENSMUSG00000070426.13	novel	2249	9	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_2	115.151896135815	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGGAATTGTCCCCCATTC	NA	False	NA	-2	True	AATATA	-24	NA	101714341	101669338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_101669700_101672518_101672598_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714272
ENSMUSG00000070426.13_101669339_101714341_2	chr7	-	1230	9	FSM	ENSMUSG00000070426.13	ENSMUST00000096639.12	2249	9	24	995	-17	0	multi-exon	FALSE	canonical	3	288	junction_4	49.7203114933927	628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGGAATTGTCCCCCATTC	NA	False	NA	-2	True	AATATA	-24	NA	101714341	101669338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714272
ENSMUSG00000070436.13_98994597_99002204_1	chr7	-	2138	5	NIC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	649.473777376731	2695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATTCTTTCTAAGACAAA	NA	False	NA	89	True	ATTAAA	-16	NA	99002204	98994596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002093
ENSMUSG00000070493.4_129909997_129916130_1	chr5	-	699	4	NNC	ENSMUSG00000070493.4	novel	915	4	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2786.08737998091	37989	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTAGCGTCCTTATTGT	2245	False	NA	-3	True	AATAAA	-18	NA	129916130	129909996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_129910238_129911269_129911421_129912809_129913025_129916038
ENSMUSG00000070493.4_129909997_129916130_2	chr5	-	716	4	NNC	ENSMUSG00000070493.4	novel	915	4	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2786.08737998091	69530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTAGCGTCCTTATTGT	2245	False	NA	-3	True	AATAAA	-18	NA	129916130	129909996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_129910238_129911269_129911438_129912809_129913025_129916038
ENSMUSG00000070493.4_129909997_129916130_3	chr5	-	701	4	NNC	ENSMUSG00000070493.4	novel	915	4	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2948.04895934017	58444	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTAGCGTCCTTATTGT	2245	False	NA	-3	True	AATAAA	-18	NA	129916130	129909996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_129910238_129911269_129911421_129912774_129912992_129916038
ENSMUSG00000070493.4_129909997_129916130_4	chr5	-	710	4	NNC	ENSMUSG00000070493.4	novel	915	4	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2786.08737998091	64180	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTAGCGTCCTTATTGT	2245	False	NA	-3	True	AATAAA	-18	NA	129916130	129909996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_129910238_129911269_129911397_129912774_129913025_129916038
ENSMUSG00000070493.4_129909997_129916130_5	chr5	-	704	4	NNC	ENSMUSG00000070493.4	novel	915	4	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2786.08737998091	61447	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTAGCGTCCTTATTGT	2245	False	NA	-3	True	AATAAA	-18	NA	129916130	129909996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_129910238_129911269_129911391_129912774_129913025_129916038
ENSMUSG00000070544.7_160487900_160545614_1	chr2	+	1231	11	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	92	19070	0	15	5prime_fragment	FALSE	canonical	3	359	junction_7	35.6084259691439	974	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGATCGTCTGCTAAACT	NA	False	NA	NA	False	AAGAAA	-6	NA	160487899	160545614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535723_160540043_160540160_160544621_160544744_160545491
ENSMUSG00000070605.5_146493229_146550672_1	chr4	+	662	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-40251	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	296.255970403973	4027	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146493228	146550672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146493332_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146500228_146550672_1	chr4	+	915	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_3	295.700794723315	4524	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500227	146550672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146500544_146502756_146502850_146508052_146508139_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146500228_146550672_2	chr4	+	961	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	259.684049482358	9031	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500227	146550672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146500544_146502756_146502850_146508052_146508139_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146500228_146550672_3	chr4	+	744	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_3	293.616348318686	3437	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500227	146550672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146500373_146502756_146502850_146508052_146508139_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146500228_146550672_4	chr4	+	813	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	255.877846290417	8360	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146500227	146550672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146500373_146502756_146502850_146508052_146508139_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146516841_146550672_1	chr4	+	599	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-4077	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	300.104148588453	14165	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1855	False	NA	NA	False	AATACA	-2	NA	146516840	146550672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146516986_146533486_146533533_146547961_146548026_146548878_146548988_146550437
ENSMUSG00000070605.5_146516841_146550672_2	chr4	+	655	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	318.789115247055	2649	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1855	False	NA	NA	False	AATACA	-2	NA	146516840	146550672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146517030_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146516841_146550672_3	chr4	+	565	4	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	367.768949205884	2221	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1855	False	NA	NA	False	AATACA	-2	NA	146516840	146550672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146516986_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146516841_146550672_4	chr4	+	611	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	291.29827926028	15727	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1855	False	NA	NA	False	AATACA	-2	NA	146516840	146550672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146516986_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146516841_146550672_5	chr4	+	704	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	304.163114134505	2314	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1855	False	NA	NA	False	AATACA	-2	NA	146516840	146550672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146516986_146518646_146518740_146533486_146533533_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070605.5_146516841_146550672_6	chr4	+	622	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-4077	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	306.569221384013	13281	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1855	False	NA	NA	False	AATACA	-2	NA	146516840	146550672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146516986_146533486_146533556_146547961_146548026_146548878_146548988_146550437
ENSMUSG00000070605.5_146516841_146550672_7	chr4	+	634	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	299.080674735095	15049	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1855	False	NA	NA	False	AATACA	-2	NA	146516840	146550672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146516986_146533486_146533556_146547961_146548020_146548860_146548988_146550437
ENSMUSG00000070637.3_141160213_141163416_1	chr4	-	675	2	FSM	ENSMUSG00000070637.3	ENSMUST00000094544.3	905	2	0	230	0	-230	multi-exon	FALSE	canonical	3	14	junction_1	0	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTATGCCTCTGTCCTCTTC	NA	False	NA	1	True	ATTAAA	-24	NA	141163416	141160212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_141160768_141163296
ENSMUSG00000070645.6_133280158_133288063_1	chr1	+	1453	9	NNC	ENSMUSG00000070645.6	novel	1592	9	NA	NA	511	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	2.17586189819115	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCGGATGGGTTCTTTGGA	7916	False	NA	10	True	AATAAA	-21	NA	133280157	133288063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_133280307_133281864_133282016_133282539_133282664_133283232_133283352_133284122_133284320_133286141_133286262_133286675_133286821_133287071_133287171_133287714
ENSMUSG00000070730.12_118967482_118987445_1	chr2	-	2177	13	NNC	ENSMUSG00000070730.12	novel	2249	13	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	78.4712880967017	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTTTGACTGTTTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	118987445	118967481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_118968234_118968827_118968909_118969519_118969574_118969832_118969932_118970524_118970603_118970740_118970817_118973108_118973164_118976814_118976922_118977789_118978076_118983856_118984001_118984370_118984564_118986838_118987033_118987387
ENSMUSG00000070732.3_91072811_91080851_1	chr1	+	1046	2	FSM	ENSMUSG00000070732.3	ENSMUST00000188818.2	630	2	-12	-404	0	404	multi-exon	FALSE	canonical	3	55	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTGAAGGCTAATGATGC	4250	False	NA	NA	False	NA	NA	NA	91072810	91080851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_91072892_91079886
ENSMUSG00000070737.11_127019839_127023197_1	chr4	+	880	3	FSM	ENSMUSG00000070737.11	ENSMUST00000094712.5	1120	3	0	240	0	-240	multi-exon	FALSE	canonical	3	98	junction_2	3.5	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATGTTCATGGCTTTTAC	NA	False	NA	NA	False	NA	NA	NA	127019838	127023197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_127019987_127021611_127021793_127022646
ENSMUSG00000070738.11_87781009_87843179_1	chr1	+	720	4	ISM	ENSMUSG00000070738.11	ENSMUST00000027517.14	5695	30	0	29033	0	-287	5prime_fragment	FALSE	canonical	3	363	junction_2	19.7033556081755	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATCTTTTCCCTCTTTG	4070	False	NA	NA	False	ATTAAA	-17	NA	87781008	87843179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_87781179_87808089_87808201_87809580_87809662_87842821
ENSMUSG00000070837.6_6998502_7006090_2	chr7	+	1198	7	FSM	ENSMUSG00000070837.7	ENSMUST00000208049.2	1401	7	203	0	0	0	multi-exon	FALSE	canonical	2	56	junction_6	128.262751152988	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2914	False	NA	20	True	ATTAAA	-21	NA	6998501	7006090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_6998712_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
ENSMUSG00000070837.6_6998502_7006090_4	chr7	+	1034	7	FSM	ENSMUSG00000070837.7	ENSMUST00000086248.8	1154	7	120	0	0	0	multi-exon	FALSE	canonical	2	17	junction_1	169.856802434678	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2914	False	NA	20	True	ATTAAA	-21	NA	6998501	7006090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_6998548_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
ENSMUSG00000070858.13_34140854_34142353_1	chr5	+	331	3	NIC	ENSMUSG00000070858.13	novel	511	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	15.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGTCCTGTATTTTG	NA	False	NA	5	True	AATAAA	-13	NA	34140853	34142353	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_34140984_34141395_34141485_34142241
ENSMUSG00000070890.4_101795659_101798638_1	chr4	+	708	3	NNC	ENSMUSG00000070890.4	novel	1452	3	NA	NA	-1945	-1742	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	1	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATATTGAGGAATTGGAAA	NA	False	NA	NA	False	ATTAAA	-27	NA	101795658	101798638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_101795732_101797576_101797891_101798317
ENSMUSG00000070890.4_101795659_101798766_1	chr4	+	836	3	NNC	ENSMUSG00000070890.4	novel	1452	3	NA	NA	-1945	-1614	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	1	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGTGTATAGGTTTGCA	NA	False	NA	NA	False	AATATA	-15	NA	101795658	101798766	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_101795732_101797576_101797891_101798317
ENSMUSG00000070953.14_34669229_34687448_1	chr2	-	533	3	NIC	ENSMUSG00000070953.14	novel	1106	7	NA	NA	-2131	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	190.5	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGACTTTTTACAAAAG	5113	False	NA	-22	True	AATAAA	-17	NA	34687448	34669228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_34669542_34685183_34685342_34687386
ENSMUSG00000070953.14_34669229_34689801_1	chr2	-	1113	8	NNC	ENSMUSG00000070953.14	novel	2968	8	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_6	144.938832981787	1287	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGACTTTTTACAAAAG	2760	False	NA	-22	True	AATAAA	-17	NA	34689801	34669228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685271_34687386_34687446_34689762
ENSMUSG00000071014.11_40270665_40279178_1	chr4	-	342	4	FSM	ENSMUSG00000071014.11	ENSMUST00000095128.10	659	4	243	74	231	0	multi-exon	FALSE	canonical	3	2502	junction_3	28.8251433455046	1553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCACTGTCCGTGTTACT	233	False	NA	-11	True	AATAAA	-17	NA	40279178	40270664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_40270848_40272809_40272855_40277652_40277746_40279157
ENSMUSG00000071054.13_56910572_56913294_1	chr17	+	1035	7	ISM	ENSMUSG00000071054.13	ENSMUST00000182378.8	3628	14	5802	-14	602	0	3prime_fragment	FALSE	canonical	3	588	junction_4	28.0639151462039	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGACTTTCAACCTCTC	NA	False	NA	35	True	AATAAA	-26	NA	56910571	56913294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912556_56912658_56912796_56912864_56912975
ENSMUSG00000071072.13_127894823_127912862_1	chr10	+	1706	7	NNC	ENSMUSG00000071072.13	novel	2000	8	NA	NA	0	15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1429.30585328061	2290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTCCTTTTAAGTG	846	False	NA	14	True	AATAAA	-15	NA	127894822	127912862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910164_127911935
ENSMUSG00000071072.13_127894823_127912862_2	chr10	+	1721	8	FSM	ENSMUSG00000071072.13	ENSMUST00000052798.14	2000	8	0	279	0	15	multi-exon	FALSE	canonical	3	2953	junction_7	394.34461257812	5904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTCCTTTTAAGTG	846	False	NA	14	True	AATAAA	-15	NA	127894822	127912862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
ENSMUSG00000071072.13_127894880_127912862_1	chr10	+	1664	8	FSM	ENSMUSG00000071072.13	ENSMUST00000052798.14	2000	8	57	279	0	15	multi-exon	FALSE	canonical	3	2953	junction_7	394.34461257812	5642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTCCTTTTAAGTG	903	False	NA	14	True	AATAAA	-15	NA	127894879	127912862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
ENSMUSG00000071072.13_127894880_127912862_2	chr10	+	1649	7	NNC	ENSMUSG00000071072.13	novel	2000	8	NA	NA	0	15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1429.30585328061	1415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTCCTTTTAAGTG	903	False	NA	14	True	AATAAA	-15	NA	127894879	127912862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910164_127911935
ENSMUSG00000071072.13_127895014_127913141_1	chr10	+	1809	8	FSM	ENSMUSG00000071072.13	ENSMUST00000052798.14	2000	8	191	0	134	0	multi-exon	FALSE	canonical	3	2953	junction_7	394.34461257812	4129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCAGTGTCACCTTGTTT	1037	False	NA	39	True	AATAAA	-40	NA	127895013	127913141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
ENSMUSG00000071074.10_46559006_46562943_1	chr17	+	1546	9	NNC	ENSMUSG00000071074.10	novel	2035	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_7	55.4209741433692	1441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGTAGCTCCTGTTGGC	2580	False	NA	23	True	ATTAAA	-18	NA	46559005	46562943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562154_46562258_46562414_46562491
ENSMUSG00000071074.10_46559006_46562943_2	chr17	+	1509	9	NNC	ENSMUSG00000071074.10	novel	2035	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	55.4412696012636	1411	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGTAGCTCCTGTTGGC	2580	False	NA	23	True	ATTAAA	-18	NA	46559005	46562943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561725_46561852_46562039_46562154_46562289_46562414_46562491
ENSMUSG00000071074.10_46559051_46562943_1	chr17	+	1470	9	FSM	ENSMUSG00000071074.10	ENSMUST00000095263.10	2035	9	45	520	0	0	multi-exon	FALSE	canonical	3	158	junction_8	7.84219357067906	1429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGTAGCTCCTGTTGGC	2625	False	NA	23	True	ATTAAA	-18	NA	46559050	46562943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562154_46562289_46562414_46562491
ENSMUSG00000071078.7_70583997_70586402_1	chr8	+	1243	4	NNC	ENSMUSG00000071078.7	novel	1161	5	NA	NA	0	3	intron_retention	FALSE	non_canonical	0	0	junction_3	279.964680312039	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCCATTTGTGGTACTCT	461	False	NA	22	True	NA	NA	NA	70583996	70586402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_70584250_70584567_70584659_70585061_70585301_70585742
ENSMUSG00000071172.14_29251647_29260472_1	chr17	+	698	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	1875	0	-233	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	4462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTTGGTGCATTTTTAA	NA	False	NA	NA	False	ATTAAA	-19	NA	29251646	29260472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
ENSMUSG00000071172.14_29251647_29261084_1	chr17	+	1306	5	NNC	ENSMUSG00000071172.14	novel	2618	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	858.014677904755	32490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAAGCCTGTTTTTCCTTG	NA	False	NA	37	True	ATTAAA	-28	NA	29251646	29261084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257634_29260180_29260268_29260357
ENSMUSG00000071172.14_29251647_29261084_2	chr17	+	1310	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	1263	0	0	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	39759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAAGCCTGTTTTTCCTTG	NA	False	NA	37	True	ATTAAA	-28	NA	29251646	29261084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
ENSMUSG00000071172.14_29251647_29261225_1	chr17	+	1451	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	1122	0	8	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	44689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGTCGAGCGAACCACTG	NA	False	NA	23	True	AATAAA	-23	NA	29251646	29261225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
ENSMUSG00000071202.6_26009480_26011347_1	chr17	+	886	5	NNC	ENSMUSG00000071202.6	novel	2118	12	NA	NA	3926	1860	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1138	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGATCAGTCGCCGGAAGT	NA	False	NA	NA	False	NA	NA	NA	26009479	26011347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_26009753_26009906_26009953_26010319_26010461_26010545_26010651_26011026
ENSMUSG00000071202.6_26009480_26011369_1	chr17	+	998	4	NIC	ENSMUSG00000071202.6	novel	2118	12	NA	NA	3926	1882	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1249	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGGCCTCCGAGGCCAGT	NA	False	NA	NA	False	NA	NA	NA	26009479	26011369	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_26009753_26009906_26009958_26010319_26010651_26011026
ENSMUSG00000071202.6_26009480_26011369_2	chr17	+	1070	5	NNC	ENSMUSG00000071202.6	novel	2118	12	NA	NA	3926	1882	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	604	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGGCCTCCGAGGCCAGT	NA	False	NA	NA	False	NA	NA	NA	26009479	26011369	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26010869
ENSMUSG00000071202.6_26009480_26011772_1	chr17	+	536	4	NNC	ENSMUSG00000071202.6	novel	2118	12	NA	NA	3926	2285	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	117	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCGGGAAACAGAGAGTATT	NA	False	NA	NA	False	NA	NA	NA	26009479	26011772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_26009753_26009906_26009958_26010319_26010461_26011701
ENSMUSG00000071230.8_24876304_24877260_1	chr17	-	467	2	FSM	ENSMUSG00000071230.8	ENSMUST00000095544.6	638	2	171	0	171	0	multi-exon	FALSE	canonical	3	16	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCGTGTGACCCTTTTT	9128	False	NA	NA	False	AATAAA	-20	NA	24877260	24876303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24876479_24876968
ENSMUSG00000071252.7_77283670_77331888_1	chr13	+	381	3	FSM	ENSMUSG00000071252.7	ENSMUST00000225992.2	616	3	0	235	0	30	multi-exon	FALSE	canonical	3	44	junction_1	11	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAAATTACTTGTTTTAT	NA	False	NA	NA	False	AATAAA	-17	NA	77283669	77331888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_77283750_77322971_77323104_77331719
ENSMUSG00000071252.7_77283670_77341475_1	chr13	+	1184	4	FSM	ENSMUSG00000071252.7	ENSMUST00000225605.2	1539	4	-3	358	0	-358	multi-exon	FALSE	canonical	3	23	junction_3	17.5562587763516	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTCCGCTCATGTATT	NA	False	NA	NA	False	AATAAA	-26	NA	77283669	77341475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_77283750_77322971_77323104_77331719_77331889_77340672
ENSMUSG00000071266.14_22643203_22673662_1	chr17	+	870	6	NIC	ENSMUSG00000071266.14	novel	2926	7	NA	NA	0	-1157	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	29.3080193803676	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAGTGTGTGTTCTATC	NA	False	NA	NA	False	TATAAA	-14	NA	22643202	22673662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_22643411_22663148_22663273_22665777_22665875_22670077_22670134_22672432_22672560_22673404
ENSMUSG00000071266.14_22643203_22673662_2	chr17	+	973	7	FSM	ENSMUSG00000071266.14	ENSMUST00000088763.13	2935	7	-46	2008	0	-1157	multi-exon	FALSE	canonical	3	18	junction_4	23.5849528301415	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAGTGTGTGTTCTATC	NA	False	NA	NA	False	TATAAA	-14	NA	22643202	22673662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_22643411_22647461_22647547_22663148_22663273_22665777_22665875_22670059_22670134_22672432_22672560_22673404
ENSMUSG00000071267.12_22148215_22181437_1	chr17	-	996	6	FSM	ENSMUSG00000071267.12	ENSMUST00000091879.12	3265	6	-5	2274	-5	-1048	multi-exon	TRUE	canonical	3	43	junction_3	17.9041894538681	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTCTACCATTGGTC	NA	False	NA	NA	False	TATAAA	-21	NA	22181437	22148214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_22148471_22149346_22149474_22151973_22152095_22160706_22160832_22172868_22173035_22181236
ENSMUSG00000071337.12_86381286_86400831_1	chr6	+	835	7	NIC	ENSMUSG00000071337.12	novel	823	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_6	55.5230182496913	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCCTAGCCCAGAATGT	9766	False	NA	NA	False	NA	NA	NA	86381285	86400831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86396116_86397305_86397394_86400587
ENSMUSG00000071350.13_59668481_59678324_1	chr14	-	855	3	ISM	ENSMUSG00000071350.13	ENSMUST00000111253.3	1774	5	0	8511	0	114	5prime_fragment	FALSE	canonical	3	96	junction_1	14.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTGAATTTTATCTGCT	NA	False	NA	NA	False	AATAAA	-21	NA	59678324	59668480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_59668718_59674885_59675215_59678035
ENSMUSG00000071359.14_22579778_22607260_1	chr10	-	2787	7	FSM	ENSMUSG00000071359.14	ENSMUST00000127698.8	2873	7	86	0	0	0	multi-exon	FALSE	canonical	3	232	junction_1	20.3367483471014	854	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTTAAGTATTCCCCCT	NA	False	NA	-7	True	AATAAA	-21	NA	22607260	22579777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587991_22607014
ENSMUSG00000071359.14_22581280_22607346_1	chr10	-	1371	7	FSM	ENSMUSG00000071359.14	ENSMUST00000127698.8	2873	7	0	1502	0	0	multi-exon	FALSE	canonical	3	232	junction_1	20.3367483471014	806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCTCTCTTCATATC	NA	False	NA	-15	True	AATAAA	-8	NA	22607346	22581279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587991_22607014
ENSMUSG00000071379.3_17740857_17841934_1	chr12	+	1612	5	NIC	ENSMUSG00000071379.3	novel	1526	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	31.8541598539343	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGAGTTTCCTGTGT	8624	False	NA	17	True	AATAAA	-5	NA	17740856	17841934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_17741048_17817214_17817301_17836147_17836550_17837545_17837652_17841107
ENSMUSG00000071379.3_17778227_17841934_1	chr12	+	1504	5	FSM	ENSMUSG00000071379.3	ENSMUST00000222944.2	697	5	0	-807	0	0	multi-exon	FALSE	canonical	3	5	junction_1	35.2304910553344	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGAGTTTCCTGTGT	NA	False	NA	17	True	AATAAA	-5	NA	17778226	17841934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_17778310_17817214_17817301_17836147_17836550_17837545_17837652_17841107
ENSMUSG00000071415.7_97668864_97673102_1	chr11	-	658	5	NNC	ENSMUSG00000071415.7	novel	728	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	160	junction_4	6011.23786648807	72214	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673102	97668863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97672898
ENSMUSG00000071415.7_97668864_97673209_1	chr11	-	765	5	NNC	ENSMUSG00000071415.7	novel	728	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	2	160	junction_4	6011.23786648807	72834	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673209	97668863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97672898
ENSMUSG00000071415.7_97668864_97673209_2	chr11	-	462	5	NNC	ENSMUSG00000071415.7	novel	1059	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	613	junction_3	5440.57875482931	34234	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673209	97668863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_97668991_97669090_97669205_97672159_97672257_97672631_97672716_97673169
ENSMUSG00000071415.7_97668864_97673209_3	chr11	-	488	5	NNC	ENSMUSG00000071415.7	novel	1059	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5700.55791129254	243668	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673209	97668863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_97668991_97669090_97669205_97672159_97672289_97672637_97672716_97673169
ENSMUSG00000071415.7_97668864_97673209_4	chr11	-	470	5	NNC	ENSMUSG00000071415.7	novel	1059	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5758.22685381533	41338	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673209	97668863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_97668991_97669090_97669205_97672183_97672289_97672631_97672716_97673169
ENSMUSG00000071415.7_97668864_97673209_5	chr11	-	476	5	NNC	ENSMUSG00000071415.7	novel	1059	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5758.22685381533	71143	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673209	97668863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_97668991_97669090_97669205_97672177_97672289_97672631_97672716_97673169
ENSMUSG00000071415.7_97668864_97673209_6	chr11	-	479	5	NNC	ENSMUSG00000071415.7	novel	1059	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	5700.55791129254	121024	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673209	97668863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_97668991_97669090_97669205_97672159_97672289_97672646_97672716_97673169
ENSMUSG00000071415.7_97668864_97673209_7	chr11	-	646	5	NIC	ENSMUSG00000071415.7	novel	1059	5	NA	NA	-1	0	intron_retention	FALSE	canonical	0	0	junction_4	6080.39149130218	90882	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673209	97668863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672868_97673169
ENSMUSG00000071415.7_97668864_97673209_8	chr11	-	481	5	NNC	ENSMUSG00000071415.7	novel	1059	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5700.55791129254	144040	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673209	97668863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_97668991_97669090_97669205_97672159_97672276_97672631_97672716_97673169
ENSMUSG00000071415.7_97668864_97673265_1	chr11	-	564	5	NNC	ENSMUSG00000071415.7	novel	728	5	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6080.39149130218	288311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673265	97668863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97673155
ENSMUSG00000071415.7_97668882_97673265_1	chr11	-	500	5	NNC	ENSMUSG00000071415.7	novel	1059	5	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	613	junction_3	5440.57875482931	15008	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTAAAGTCTCTGCTCTG	NA	False	NA	-53	True	AATATA	-2	NA	97673265	97668881	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_97668991_97669090_97669205_97672159_97672257_97672631_97672716_97673169
ENSMUSG00000071415.7_97672465_97673209_1	chr11	-	291	2	ISM	ENSMUSG00000071415.7	ENSMUST00000103146.5	1059	5	54	4112	-1	-235	5prime_fragment	FALSE	canonical	3	11120	junction_1	0	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTCTGAAAGATTACTTA	NA	False	NA	-3	True	NA	NA	NA	97673209	97672464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_97672716_97673169
ENSMUSG00000071456.7_3456221_3476714_2	chr12	-	986	3	FSM	ENSMUSG00000071456.7	ENSMUST00000095903.7	1923	3	26	911	0	485	multi-exon	FALSE	canonical	3	62	junction_1	5.5	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATCCTAATTAAGGCCC	NA	False	NA	NA	False	ATTAAA	-24	NA	3476714	3456220	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_3456712_3457643_3457925_3476500
ENSMUSG00000071456.7_3476912_3547062_1	chr12	-	2234	11	NNC	ENSMUSG00000071456.7	novel	3569	3	NA	NA	-70051	-19688	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTACAAGCAGCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	3547062	3476911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_3477213_3492473_3492561_3501661_3501771_3507061_3507210_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224
ENSMUSG00000071470.5_51026705_51033185_1	chr14	-	1579	5	NNC	ENSMUSG00000071470.5	novel	1509	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	80.7971998277168	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTCTTTTCTTTTTGGC	8876	False	NA	1	True	AATAAA	-20	NA	51033185	51026704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_51027470_51027592_51027663_51029429_51029764_51031014_51031332_51033092
ENSMUSG00000071528.5_47071903_47079086_1	chr19	-	448	5	NNC	ENSMUSG00000071528.5	novel	425	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_4	2981.59525254519	62282	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTTGTCTTTATTTACA	NA	False	NA	0	True	AATAAA	-17	NA	47079086	47071902	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_47072009_47074393_47074487_47074572_47074669_47075598_47075677_47079011
ENSMUSG00000071533.12_55836923_55850050_1	chr16	-	1137	5	FSM	ENSMUSG00000071533.12	ENSMUST00000125040.8	2200	5	9	1054	-1	240	multi-exon	FALSE	canonical	3	494	junction_4	790.763357459107	1534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTTATATGAAGAATTGAG	NA	False	NA	-10	True	AATAAA	-17	NA	55850050	55836922	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55849965
ENSMUSG00000071533.12_55837163_55850050_1	chr16	-	949	5	FSM	ENSMUSG00000071533.12	ENSMUST00000114444.9	2295	5	52	1294	-1	0	multi-exon	FALSE	canonical	3	1624	junction_1	369.138439477657	1809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTCTCCCTCGTTACCC	NA	False	NA	NA	False	NA	NA	NA	55850050	55837162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844802_55849965
ENSMUSG00000071533.12_55837362_55850050_1	chr16	-	698	5	FSM	ENSMUSG00000071533.12	ENSMUST00000125040.8	2200	5	9	1493	-1	0	multi-exon	FALSE	canonical	3	494	junction_4	790.763357459107	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATGTTTTATATACAGAT	NA	False	NA	NA	False	AATAAA	-24	NA	55850050	55837361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55849965
ENSMUSG00000071533.12_55838649_55850050_1	chr16	-	617	4	FSM	ENSMUSG00000071533.12	ENSMUST00000122253.2	792	4	9	166	-1	-166	multi-exon	FALSE	canonical	3	1778	junction_3	312.848206004126	880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTACACACGTGCACAT	NA	False	NA	NA	False	AATAAA	-26	NA	55850050	55838648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_55838891_55842417_55842493_55844586_55844802_55849965
ENSMUSG00000071533.12_55838649_55850050_2	chr16	-	741	5	NNC	ENSMUSG00000071533.12	novel	938	5	NA	NA	-1	-166	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_3	1116.26307383161	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTACACACGTGCACAT	NA	False	NA	NA	False	AATAAA	-26	NA	55850050	55838648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_55838891_55842417_55842493_55844586_55844750_55844824_55845001_55849965
ENSMUSG00000071533.12_55838649_55850050_3	chr16	-	565	4	ISM	ENSMUSG00000071533.12	ENSMUST00000125040.8	2200	5	9	2780	-1	-166	5prime_fragment	FALSE	canonical	3	494	junction_3	909.968131310103	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTACACACGTGCACAT	NA	False	NA	NA	False	AATAAA	-26	NA	55850050	55838648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_55838891_55842417_55842493_55844586_55844750_55849965
ENSMUSG00000071632.11_18655331_18658910_1	chr16	+	1220	5	NNC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	73.1996413925642	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655330	18658910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_18655370_18655455_18655624_18657839_18658616_18658644_18658665_18658693
ENSMUSG00000071632.11_18655331_18658910_2	chr16	+	1249	4	NNC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	72.2695571377664	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655330	18658910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_18655370_18655455_18655624_18657839_18658665_18658693
ENSMUSG00000071632.11_18655331_18658910_3	chr16	+	1364	2	FSM	ENSMUSG00000071632.11	ENSMUST00000190776.2	930	2	-74	-360	0	0	multi-exon	FALSE	canonical	3	177	junction_1	0	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655330	18658910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18655624_18657839
ENSMUSG00000071632.11_18655331_18658910_4	chr16	+	1295	3	NNC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_2	88.5	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655330	18658910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_18655624_18657839_18658622_18658690
ENSMUSG00000071632.11_18655331_18658910_5	chr16	+	1221	5	NNC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	73.1996413925642	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655330	18658910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_18655370_18655455_18655624_18657839_18658619_18658646_18658665_18658693
ENSMUSG00000071632.11_18655331_18658910_6	chr16	+	1208	4	NNC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	72.2695571377664	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655330	18658910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_18655370_18655455_18655624_18657839_18658618_18658687
ENSMUSG00000071644.11_8944559_8945907_1	chr19	+	359	2	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	154	9936	154	-963	5prime_fragment	FALSE	canonical	3	5201	junction_1	0	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTGAAAGCTCCCGGA	997	False	NA	NA	False	ATTAAA	-33	NA	8944558	8945907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_8944590_8945579
ENSMUSG00000071644.11_8944559_8955546_1	chr19	+	1408	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	2956.59243716583	40133	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955312
ENSMUSG00000071644.11_8944559_8955546_10	chr19	+	1413	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	3762.66295902382	50950	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947357_8949870_8950001_8950272_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071644.11_8944559_8955546_11	chr19	+	1395	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	2956.59243716583	3852	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955325
ENSMUSG00000071644.11_8944559_8955546_12	chr19	+	1394	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2978.23859618441	18172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947357_8949894_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071644.11_8944559_8955546_13	chr19	+	1390	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	canonical	1	237	junction_6	2922.23362481933	10588	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950290_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071644.11_8944559_8955546_14	chr19	+	1421	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	2992.1108037184	57742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950481_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071644.11_8944559_8955546_15	chr19	+	1400	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2989.51105048763	23232	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8949993_8950272_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071644.11_8944559_8955546_16	chr19	+	1399	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2998.79491022315	25398	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946741_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071644.11_8944559_8955546_17	chr19	+	1392	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	3000.53417877962	13059	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947228_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071644.11_8944559_8955546_2	chr19	+	1384	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2877.68455447461	15744	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8944590_8945608_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071644.11_8944559_8955546_3	chr19	+	1394	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	3000.53417877962	11353	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947226_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071644.11_8944559_8955546_4	chr19	+	1398	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2989.51105048763	15983	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950282_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071644.11_8944559_8955546_5	chr19	+	1409	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2978.23859618441	37337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947357_8949879_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071644.11_8944559_8955546_6	chr19	+	1408	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2877.68455447461	36155	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8944590_8945584_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071644.11_8944559_8955546_7	chr19	+	1397	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3791.34564208775	12860	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946738_8946871_8947207_8947352_8949870_8950001_8950272_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071644.11_8944559_8955546_8	chr19	+	1403	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_9	2948.88682491764	10689	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955317
ENSMUSG00000071644.11_8944559_8955546_9	chr19	+	1397	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	3000.53417877962	10718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	13	True	ATTAAA	-18	NA	8944558	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946834_8947186_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071644.11_8945580_8955546_1	chr19	+	1377	9	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	0	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	3034.14001149832	11261	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	2018	False	NA	13	True	ATTAAA	-18	NA	8945579	8955546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950272_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUSG00000071646.10_8919239_8929667_1	chr19	+	1015	7	NNC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	338.777540905861	98	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTCAGCTATTCTGTGTG	3469	False	NA	20	True	AATAAA	-24	NA	8919238	8929667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923678_8929551
ENSMUSG00000071646.10_8919239_8929667_2	chr19	+	3128	18	NNC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	219.754739035862	2798	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTCAGCTATTCTGTGTG	3469	False	NA	20	True	AATAAA	-24	NA	8919238	8929667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923376_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
ENSMUSG00000071647.6_8914566_8918946_1	chr19	+	1363	10	ISM	ENSMUSG00000071647.6	ENSMUST00000224272.2	2978	22	7309	0	-1099	0	3prime_fragment	FALSE	canonical	3	44	junction_1	12.6031546119549	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGGTGCTTTTGTGCG	9565	False	NA	6	True	AATAAA	-14	NA	8914565	8918946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_8914645_8914725_8914852_8914926_8915059_8915825_8915894_8916391_8916481_8916551_8916650_8916780_8916869_8917942_8918042_8918266_8918398_8918493
ENSMUSG00000071647.6_8916409_8918946_1	chr19	+	941	6	ISM	ENSMUSG00000071647.6	ENSMUST00000224272.2	2978	22	9152	0	526	0	3prime_fragment	FALSE	canonical	3	55	junction_2	13.2423562857975	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGGTGCTTTTGTGCG	639	False	NA	6	True	AATAAA	-14	NA	8916408	8918946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_8916481_8916551_8916650_8916780_8916869_8917942_8918042_8918266_8918398_8918493
ENSMUSG00000071649.7_8897848_8904600_1	chr19	+	1327	5	FSM	ENSMUSG00000071649.7	ENSMUST00000237071.2	909	5	0	-418	0	0	multi-exon	FALSE	canonical	3	30	junction_2	75.1644031440415	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCTTCATGGTTTCCTTC	4822	False	NA	19	True	AATAAA	-16	NA	8897847	8904600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8898013_8899169_8899345_8903067_8903263_8903445_8903737_8904099
ENSMUSG00000071650.7_8875471_8882832_1	chr19	+	801	4	FSM	ENSMUSG00000071650.7	ENSMUST00000236499.2	1226	4	-5	430	0	-430	multi-exon	FALSE	canonical	3	992	junction_1	91.0469964114993	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGACAGACTCTCATTCT	1899	False	NA	NA	False	NA	NA	NA	8875470	8882832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298
ENSMUSG00000071653.10_8866279_8868110_1	chr19	+	609	4	FSM	ENSMUSG00000071653.10	ENSMUST00000096251.10	806	4	62	135	0	0	multi-exon	FALSE	canonical	3	2965	junction_2	196.086715511276	14016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATGAAGTGCAGCAGGG	NA	False	NA	32	True	AATAAA	-21	NA	8866278	8868110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774
ENSMUSG00000071653.10_8866279_8868110_2	chr19	+	700	5	FSM	ENSMUSG00000071653.10	ENSMUST00000185488.7	500	5	0	-200	0	0	multi-exon	FALSE	canonical	3	137	junction_2	1592.05511839258	5863	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATGAAGTGCAGCAGGG	NA	False	NA	32	True	AATAAA	-21	NA	8866278	8868110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8866329_8866487_8866613_8867000_8867092_8867366_8867465_8867774
ENSMUSG00000071653.10_8866279_8868110_3	chr19	+	603	4	NNC	ENSMUSG00000071653.10	novel	500	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1523.50655470274	13021	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATGAAGTGCAGCAGGG	NA	False	NA	32	True	AATAAA	-21	NA	8866278	8868110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8866329_8866487_8866613_8867366_8867465_8867780
ENSMUSG00000071654.7_8857634_8858287_1	chr19	-	565	2	FSM	ENSMUSG00000071654.7	ENSMUST00000096253.7	821	2	0	256	0	-256	multi-exon	FALSE	canonical	3	500	junction_1	0	5087	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGATTTCGCAGCTGGACA	NA	False	NA	-11	True	AATAAA	-18	NA	8858287	8857633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_8857981_8858069
ENSMUSG00000071655.13_8848923_8853028_1	chr19	+	1036	10	NNC	ENSMUSG00000071655.13	novel	1033	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	499.823252711013	11255	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTGGCTCCTTCCAGA	5912	False	NA	33	True	AATAAA	-21	NA	8848922	8853028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8848950_8849034_8849121_8849227_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ENSMUSG00000071655.13_8848923_8853028_2	chr19	+	1228	8	FSM	ENSMUSG00000071655.13	ENSMUST00000096255.7	1127	8	-101	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_3	101.556257657457	6849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTGGCTCCTTCCAGA	5912	False	NA	33	True	AATAAA	-21	NA	8848922	8853028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ENSMUSG00000071655.13_8848923_8853028_3	chr19	+	1143	9	NIC	ENSMUSG00000071655.13	novel	1033	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	339	junction_1	343.320345122453	3095	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTGGCTCCTTCCAGA	5912	False	NA	33	True	AATAAA	-21	NA	8848922	8853028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_8848950_8849034_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ENSMUSG00000071655.13_8848923_8853028_4	chr19	+	1121	9	NNC	ENSMUSG00000071655.13	novel	1033	10	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	452.122217989782	13119	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTGGCTCCTTCCAGA	5912	False	NA	33	True	AATAAA	-21	NA	8848922	8853028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8849121_8849227_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ENSMUSG00000071657.13_8815051_8820771_1	chr19	+	1103	4	ISM	ENSMUSG00000071657.13	ENSMUST00000159634.8	1684	12	-42	5260	0	3164	5prime_fragment	FALSE	canonical	3	57	junction_1	48.787521173167	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTAATGTCATTTTTTAT	NA	False	NA	NA	False	AATAAA	-18	NA	8815050	8820771	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_8815229_8816939_8817149_8818471_8818789_8820372
ENSMUSG00000071657.13_8816754_8826031_1	chr19	+	1734	11	FSM	ENSMUSG00000071657.13	ENSMUST00000160556.8	1795	11	62	-1	0	0	multi-exon	FALSE	canonical	0	0	junction_6	47.8256207487158	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGTGTGGACATCCG	NA	False	NA	14	True	AATAAA	-14	NA	8816753	8826031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8817149_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
ENSMUSG00000071657.13_8824868_8826031_1	chr19	+	459	5	NNC	ENSMUSG00000071657.13	novel	1684	12	NA	NA	1314	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	62.6433356391564	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGTGTGGACATCCG	2005	False	NA	14	True	AATAAA	-14	NA	8824867	8826031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8824912_8825030_8825098_8825277_8825347_8825444_8825520_8825827
ENSMUSG00000071658.6_8815051_8826031_1	chr19	-	1726	12	NIC	ENSMUSG00000071658.6	novel	1643	3	NA	NA	-9473	-754	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCCCGAGCGCCCCCAGT	NA	False	NA	NA	False	NA	NA	NA	8826031	8815050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_8815229_8816939_8817149_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
ENSMUSG00000071658.6_8815093_8816574_1	chr19	-	863	3	FSM	ENSMUSG00000071658.6	ENSMUST00000096259.6	1643	3	-16	796	-16	-796	multi-exon	TRUE	canonical	3	189	junction_2	8	1737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCGTTAGACATTGTAAG	4746	False	NA	77	True	NA	NA	NA	8816574	8815092	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_8815636_8815917_8816018_8816354
ENSMUSG00000071662.5_8770491_8775941_1	chr19	-	730	7	NIC	ENSMUSG00000071662.5	novel	890	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	548.478324295703	921	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGTTTGGTTTTATGT	NA	False	NA	-1	True	ATTAAA	-17	NA	8775941	8770490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8775587_8775698_8775822
ENSMUSG00000071708.12_156228692_156275042_2	chrX	-	1539	10	NNC	ENSMUSG00000071708.12	novel	3717	11	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_4	144.681856174756	400	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGATTAGCAGTGCTTCA	NA	False	NA	-46	True	ATTAAA	-27	NA	156275042	156228691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239105_156244177_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
ENSMUSG00000071708.12_156228692_156275042_3	chrX	-	1635	11	FSM	ENSMUSG00000071708.12	ENSMUST00000112529.8	3717	11	241	1841	-2	0	multi-exon	FALSE	canonical	0	0	junction_5	141.867156170835	2680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGATTAGCAGTGCTTCA	NA	False	NA	-46	True	ATTAAA	-27	NA	156275042	156228691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239105_156243322_156243413_156244171_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
ENSMUSG00000071708.12_156228692_156275042_4	chrX	-	1638	11	NNC	ENSMUSG00000071708.12	novel	3717	11	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	141.867156170835	2662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGATTAGCAGTGCTTCA	NA	False	NA	-46	True	ATTAAA	-27	NA	156275042	156228691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239105_156243322_156243422_156244177_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
ENSMUSG00000071711.13_78290912_78295003_1	chr15	+	794	2	FSM	ENSMUSG00000071711.13	ENSMUST00000229791.2	522	2	296	-568	0	227	multi-exon	FALSE	canonical	1	3	junction_1	0	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTAAGCATCTCGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	78290911	78295003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_78290945_78294242
ENSMUSG00000071773.5_36477457_36481772_1	chrX	-	757	3	ISM	ENSMUSG00000071773.5	ENSMUST00000115210.2	883	5	4139	0	4139	0	3prime_fragment	FALSE	canonical	3	117	junction_2	2	153	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGAATTCTCGACATGT	NA	False	NA	-23	True	AATAAA	-1	NA	36481772	36477456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_36477701_36479202_36479249_36481305
ENSMUSG00000071773.5_36477457_36481929_1	chrX	-	751	4	ISM	ENSMUSG00000071773.5	ENSMUST00000115210.2	883	5	3982	0	3982	0	3prime_fragment	FALSE	canonical	3	106	junction_3	6.34209919681348	1122	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGAATTCTCGACATGT	NA	False	NA	-23	True	AATAAA	-1	NA	36481929	36477456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_36477701_36479202_36479249_36481305_36481649_36481811
ENSMUSG00000071773.5_36477457_36481988_1	chrX	-	764	3	NIC	ENSMUSG00000071773.5	novel	883	5	NA	NA	3923	0	combination_of_known_splicesites	FALSE	canonical	1	5	junction_1	50.5	890	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGAATTCTCGACATGT	NA	False	NA	-23	True	AATAAA	-1	NA	36481988	36477456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_36477701_36481305_36481649_36481811
ENSMUSG00000071793.13_19834751_20036335_1	chr8	+	797	3	Fusion	ENSMUSG00000110669.2_ENSMUSG00000071793.13	novel	948	5	NA	NA	-11	-9553	multi-exon	FALSE	canonical	3	906	junction_2	157	343	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGATTATGGCTTCTG	NA	False	NA	NA	False	NA	NA	NA	19834750	20036335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr8_+_19834867_20030550_20030757_20035860
ENSMUSG00000071793.13_19834751_20046223_1	chr8	+	1081	5	Fusion	ENSMUSG00000110669.2_ENSMUSG00000071793.13	novel	948	5	NA	NA	-11	335	multi-exon	FALSE	non_canonical	0	0	junction_4	524.848251878579	1249	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCATTCAACGTTAGGGC	NA	False	NA	NA	False	AATAAA	-15	NA	19834750	20046223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036156_20045732_20045901_20045927
ENSMUSG00000071793.13_20016466_20030715_1	chr8	+	388	2	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	0	24783	0	-15173	5prime_fragment	FALSE	canonical	3	882	junction_1	0	116	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGGAGAACTACTGTTTA	NA	False	NA	NA	False	NA	NA	NA	20016465	20030715	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_20016689_20030550
ENSMUSG00000071793.13_20016466_20043149_1	chr8	+	2353	5	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	0	12349	0	-2739	5prime_fragment	FALSE	canonical	3	606	junction_2	352.991147197773	1616	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTTTATGAGTGTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	20016465	20043149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811
ENSMUSG00000071793.13_20016466_20043149_2	chr8	+	2010	6	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	0	-2739	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	519.250844968017	1552	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTTTATGAGTGTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	20016465	20043149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811_20042916_20043091
ENSMUSG00000071793.13_20016466_20045897_1	chr8	+	889	4	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	0	9	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_3	385.262104143256	365	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCTGCTGCTGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	20016465	20045897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_20016689_20030550_20030757_20035860_20036156_20045732
ENSMUSG00000071793.13_20016571_20031037_1	chr8	+	605	2	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	105	24461	105	-14851	5prime_fragment	FALSE	canonical	3	882	junction_1	0	191	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGACAGAACAACAGTAGG	NA	False	NA	NA	False	NA	NA	NA	20016570	20031037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_20016689_20030550
ENSMUSG00000071793.13_20016571_20042010_2	chr8	+	1109	5	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	105	13488	105	-3878	5prime_fragment	FALSE	canonical	3	606	junction_2	352.991147197773	309	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGCTCAGCGAGAGCCT	NA	False	NA	NA	False	AGTAAA	-27	NA	20016570	20042010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811
ENSMUSG00000071793.13_20016571_20042225_1	chr8	+	1148	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	105	-3663	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_2	548.643782430823	555	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGAGTCTTGAGATATT	NA	False	NA	NA	False	ATTAAA	-25	NA	20016570	20042225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_20016689_20030550_20030748_20035860_20036160_20039783_20039904_20041811
ENSMUSG00000071793.13_20016571_20042225_2	chr8	+	1324	5	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	105	13273	105	-3663	5prime_fragment	FALSE	canonical	3	606	junction_2	352.991147197773	598	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGAGTCTTGAGATATT	NA	False	NA	NA	False	ATTAAA	-25	NA	20016570	20042225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811
ENSMUSG00000071796.14_20016571_20169259_2	chr8	+	942	5	Fusion	ENSMUSG00000071796.14_ENSMUSG00000071793.13	novel	4009	6	NA	NA	105	-3735	multi-exon	FALSE	canonical	3	510	junction_1	328.553268131668	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGCTCAGCGAGAGCCT	NA	False	NA	NA	False	AGTAAA	-27	NA	20016570	20169259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr8_+_20016689_20157802_20158009_20163109_20163409_20167037_20167158_20169060
ENSMUSG00000071796.14_20143848_20169259_1	chr8	+	933	5	NNC	ENSMUSG00000071796.14	novel	4659	5	NA	NA	0	-3735	at_least_one_novel_splicesite	FALSE	canonical	3	474	junction_1	337.871647227168	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGCTCAGCGAGAGCCT	7188	False	NA	NA	False	AGTAAA	-27	NA	20143847	20169259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_20143957_20157802_20158009_20163109_20163409_20167037_20167158_20169060
ENSMUSG00000071855.6_46415832_46420718_1	chr18	-	1039	4	ISM	ENSMUSG00000071855.6	ENSMUST00000072835.7	2801	10	24277	614	3199	393	3prime_fragment	FALSE	canonical	3	48	junction_3	14.6590889515307	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGAAGACTATTTTAAATA	NA	False	NA	-4	True	ATTAAA	-16	NA	46420718	46415831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr18_-_46416354_46416743_46416863_46418679_46418776_46420416
ENSMUSG00000071866.13_6365876_6369663_1	chr11	+	583	5	FSM	ENSMUSG00000071866.13	ENSMUST00000132846.2	1170	5	433	154	0	0	multi-exon	FALSE	canonical	3	36680	junction_4	732.852474922477	3897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGAGCGTCCCTACCCCAT	NA	False	NA	NA	False	NA	NA	NA	6365875	6369663	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_6365980_6368100_6368132_6368225_6368315_6369112_6369286_6369477
ENSMUSG00000071866.13_6365876_6369817_1	chr11	+	737	5	FSM	ENSMUSG00000071866.13	ENSMUST00000132846.2	1170	5	433	0	0	0	multi-exon	FALSE	canonical	3	36680	junction_4	732.852474922477	98614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTTGTTTGTATTGGAG	NA	False	NA	2	True	AATAAA	-19	NA	6365875	6369817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_6365980_6368100_6368132_6368225_6368315_6369112_6369286_6369477
ENSMUSG00000072082.8_24442204_24470302_1	chr17	-	3020	17	FSM	ENSMUSG00000072082.8	ENSMUST00000115390.5	4133	17	81	1032	-10	-1032	multi-exon	FALSE	canonical	3	665	junction_16	77.1289504660863	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACTGTGCTTCAACTGA	8756	False	NA	-4	True	AATAAA	-19	NA	24470302	24442203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
ENSMUSG00000072082.8_24442301_24470383_1	chr17	-	3004	17	FSM	ENSMUSG00000072082.8	ENSMUST00000115390.5	4133	17	0	1129	0	-1129	multi-exon	FALSE	canonical	3	665	junction_16	77.1289504660863	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTGTCTTTATTT	8675	False	NA	-13	True	NA	NA	NA	24470383	24442300	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
ENSMUSG00000072100.5_153669801_153696634_1	chrX	-	1099	3	NNC	ENSMUSG00000072100.5	novel	1079	2	NA	NA	-23371	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAGTGTCAGAGTATAT	NA	False	NA	NA	False	AATAAA	-15	NA	153696634	153669800	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_153670743_153694959_153695062_153696579
ENSMUSG00000072109.12_85084355_85091495_1	chr1	+	1071	4	FSM	ENSMUSG00000072109.12	ENSMUST00000162353.8	2017	4	688	258	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTGATCAAGTTCTGGT	NA	False	NA	NA	False	ATTAAA	-16	NA	85084354	85091495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_85084412_85089529_85089681_85090171_85090307_85090767
ENSMUSG00000072235.7_98847718_98851432_1	chr15	-	1651	4	FSM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	152	0	152	0	multi-exon	FALSE	canonical	3	1268	junction_3	1593.04014038846	12237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTGTGTTCTATATT	NA	False	NA	-4	True	AATAAA	-19	NA	98851432	98847717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98848896_98849068_98849218_98849349_98849573_98851331
ENSMUSG00000072244.12_103868044_103884111_1	chr7	+	3491	9	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	0	-248	intron_retention	TRUE	canonical	0	0	junction_8	239.859203492382	700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	13	True	AATAAA	-14	NA	103868043	103884111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825
ENSMUSG00000072258.12_183170325_183190194_1	chr1	+	1490	11	NNC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	0	-826	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	14.0996453856117	92	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTACAGTGTAGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	183170324	183190194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_183170431_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189583_183190053
ENSMUSG00000072258.12_183170325_183190194_2	chr1	+	1558	11	FSM	ENSMUSG00000072258.12	ENSMUST00000192076.3	2384	11	0	826	0	-826	multi-exon	FALSE	canonical	3	59	junction_7	9.96042167782067	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTACAGTGTAGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	183170324	183190194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_183170499_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189583_183190053
ENSMUSG00000072294.6_100386588_100521920_1	chr14	-	872	2	ISM	ENSMUSG00000072294.6	ENSMUST00000226774.2	719	4	0	126320	0	99457	5prime_fragment	FALSE	canonical	2	16	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAACCAACCA	NA	False	NA	NA	False	NA	NA	NA	100521920	100386587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_100387232_100521692
ENSMUSG00000072419.6_48130840_48139542_1	chr16	+	1404	7	FSM	ENSMUSG00000072419.6	ENSMUST00000097175.5	1948	7	0	544	0	-544	multi-exon	FALSE	canonical	3	478	junction_4	51.0968579160098	1815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTATGGCTTTATCATGTA	NA	False	NA	NA	False	AATATA	-14	NA	48130839	48139542	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995
ENSMUSG00000072419.6_48130840_48139922_1	chr16	+	1784	7	FSM	ENSMUSG00000072419.6	ENSMUST00000097175.5	1948	7	0	164	0	-164	multi-exon	FALSE	canonical	3	478	junction_4	51.0968579160098	3242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTGGTCTTGAGTATTT	NA	False	NA	64	True	NA	NA	NA	48130839	48139922	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995
ENSMUSG00000072479.11_72192402_72202005_1	chrX	+	1080	8	NIC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	0	306	combination_of_known_splicesites	FALSE	canonical	3	121	junction_7	152.49623615295	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192401	72202005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_72192503_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72201393_72201499_72201594
ENSMUSG00000072479.11_72192402_72202005_2	chrX	+	1179	9	FSM	ENSMUSG00000072479.11	ENSMUST00000114518.9	1652	9	0	473	0	306	multi-exon	TRUE	canonical	3	121	junction_8	146.338167868127	989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192401	72202005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_72192503_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72200175_72201393_72201499_72201594
ENSMUSG00000072479.11_72192402_72202005_3	chrX	+	1088	8	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	0	306	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	185.378157355417	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192401	72202005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_72192511_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72201393_72201499_72201594
ENSMUSG00000072479.11_72192402_72202005_4	chrX	+	1003	8	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	0	306	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_1	175.455093388361	294	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192401	72202005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_72192426_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72201393_72201499_72201594
ENSMUSG00000072479.11_72192402_72202005_5	chrX	+	1057	8	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	0	306	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	187.636209029002	339	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192401	72202005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_72192480_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72201393_72201499_72201594
ENSMUSG00000072571.4_52255835_52257251_1	chr14	+	1011	3	ISM	ENSMUSG00000072571.4	ENSMUST00000100638.4	1234	7	1513	0	1459	0	3prime_fragment	FALSE	canonical	3	19	junction_2	0.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGACGCCAGGCGCTG	NA	False	NA	23	True	AATAAA	-37	NA	52255834	52257251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_52256110_52256188_52256336_52256662
ENSMUSG00000072571.4_52255942_52257251_1	chr14	+	904	3	ISM	ENSMUSG00000072571.4	ENSMUST00000100638.4	1234	7	1620	0	1566	0	3prime_fragment	FALSE	canonical	3	19	junction_2	0.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGACGCCAGGCGCTG	NA	False	NA	23	True	AATAAA	-37	NA	52255941	52257251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_52256110_52256188_52256336_52256662
ENSMUSG00000072571.4_52256055_52257251_1	chr14	+	791	3	ISM	ENSMUSG00000072571.4	ENSMUST00000100638.4	1234	7	1733	0	1679	0	3prime_fragment	FALSE	canonical	3	19	junction_2	0.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGACGCCAGGCGCTG	NA	False	NA	23	True	AATAAA	-37	NA	52256054	52257251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_52256110_52256188_52256336_52256662
ENSMUSG00000072572.10_52131067_52133265_1	chr14	+	1397	4	FSM	ENSMUSG00000072572.10	ENSMUST00000047726.12	2334	4	0	937	0	2	multi-exon	FALSE	canonical	3	11	junction_3	1.24721912892465	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATTGCAATTCTGCCTC	NA	False	NA	16	True	AATAAA	-27	NA	52131066	52133265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_52131372_52131545_52131677_52131912_52131964_52132355
ENSMUSG00000072582.10_86574811_86581016_1	chr11	+	865	3	FSM	ENSMUSG00000072582.10	ENSMUST00000108021.2	3132	3	0	2267	0	-2267	multi-exon	FALSE	non_canonical	0	0	junction_2	3	4286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTCCCATGTTCCTCT	NA	False	NA	19	True	AATAAA	-26	NA	86574810	86581016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_86574950_86578861_86578956_86580384
ENSMUSG00000072582.10_86574811_86581016_2	chr11	+	771	2	FSM	ENSMUSG00000072582.10	ENSMUST00000108022.8	3038	2	0	2267	0	-2267	multi-exon	FALSE	canonical	3	249	junction_1	0	4554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTCCCATGTTCCTCT	NA	False	NA	19	True	AATAAA	-26	NA	86574810	86581016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_86574950_86580384
ENSMUSG00000072591.11_128656170_128677751_1	chr5	-	466	3	NIC	ENSMUSG00000072591.11	novel	2429	6	NA	NA	0	0	intron_retention	FALSE	canonical	2	6	junction_2	3	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGTCTGTCCTTCCAGAT	NA	False	NA	NA	False	AATAAA	-36	NA	128677751	128656169	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_128656350_128662335_128662471_128677600
ENSMUSG00000072640.12_78717430_78730101_2	chr11	+	420	4	FSM	ENSMUSG00000072640.12	ENSMUST00000147875.9	8035	4	20	7595	0	0	multi-exon	FALSE	canonical	3	164	junction_1	44.0782133132559	1666	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTGAGGTGGTTCTCGT	NA	False	NA	20	True	AAGAAA	-13	NA	78717429	78730101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78717463_78726843_78726985_78728915_78729009_78729948
ENSMUSG00000072676.13_25924421_25928067_1	chr14	-	1421	4	FSM	ENSMUSG00000072676.13	ENSMUST00000185006.9	2147	4	29	697	0	173	multi-exon	FALSE	canonical	3	137	junction_1	7.40870359029762	940	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCACATGCATCTGAGTT	NA	False	NA	-5	True	AGTAAA	-18	NA	25928067	25924420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927721
ENSMUSG00000072676.13_25924594_25927849_1	chr14	-	1030	4	FSM	ENSMUSG00000072676.13	ENSMUST00000185006.9	2147	4	247	870	-175	0	multi-exon	FALSE	canonical	3	137	junction_1	7.40870359029762	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTCTCTTGATCGTGA	NA	False	NA	-13	True	NA	NA	NA	25927849	25924593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927721
ENSMUSG00000072676.13_25924594_25928067_1	chr14	-	1248	4	FSM	ENSMUSG00000072676.13	ENSMUST00000185006.9	2147	4	29	870	0	0	multi-exon	FALSE	canonical	3	137	junction_1	7.40870359029762	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTCTCTTGATCGTGA	NA	False	NA	-13	True	NA	NA	NA	25928067	25924593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927721
ENSMUSG00000072694.9_114960374_114961510_1	chr5	-	550	2	FSM	ENSMUSG00000072694.9	ENSMUST00000100850.6	420	2	-4	-126	-4	126	multi-exon	FALSE	canonical	3	282	junction_1	0	1877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCCACCCACCTGCTTT	9612	False	NA	-17	True	NA	NA	NA	114961510	114960373	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_114960787_114961373
ENSMUSG00000072754.10_110501962_110503960_1	chr5	+	889	3	NIC	ENSMUSG00000072754.10	novel	692	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	27	junction_1	0	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTCCAGTCCATGTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	110501961	110503960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_110502483_110502590_110502717_110503718
ENSMUSG00000072762.10_109883381_109899572_1	chr5	-	2585	4	FSM	ENSMUSG00000072762.10	ENSMUST00000112547.8	2001	4	-109	-475	-109	475	multi-exon	FALSE	canonical	3	85	junction_1	29.0631496343164	928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGCCATATGCCTTTTT	7837	False	NA	NA	False	NA	NA	NA	109899572	109883380	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_109885666_109886815_109886877_109887064_109887192_109899460
ENSMUSG00000072762.10_109886697_109899463_1	chr5	-	310	3	FSM	ENSMUSG00000072762.10	ENSMUST00000100937.4	599	3	289	0	0	0	multi-exon	FALSE	canonical	3	125	junction_2	15.5	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTGATTAAATTCTCA	7946	False	NA	NA	False	NA	NA	NA	109899463	109886696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_109886877_109887064_109887192_109899460
ENSMUSG00000072762.10_109886697_109899572_1	chr5	-	419	3	FSM	ENSMUSG00000072762.10	ENSMUST00000100937.4	599	3	180	0	-109	0	multi-exon	FALSE	canonical	3	125	junction_2	15.5	1408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTGATTAAATTCTCA	7837	False	NA	NA	False	NA	NA	NA	109899572	109886696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_109886877_109887064_109887192_109899460
ENSMUSG00000072763.3_109788797_109838700_1	chr5	-	614	5	NNC	ENSMUSG00000072763.3	novel	3341	4	NA	NA	207	33614	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	32.5605205732341	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGATTAAAATAATCCCTTG	6338	False	NA	NA	False	AATAAA	-20	NA	109838700	109788796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_109789040_109825173_109825258_109826379_109826441_109826628_109826756_109838601
ENSMUSG00000072763.3_109822411_109838700_1	chr5	-	3134	4	FSM	ENSMUSG00000072763.3	ENSMUST00000092720.4	3341	4	207	0	207	0	multi-exon	FALSE	canonical	3	41	junction_1	21.5148527508066	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCATGGTCATGGTATC	6338	False	NA	-3	True	NA	NA	NA	109838700	109822410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_109825258_109826379_109826441_109826628_109826756_109838601
ENSMUSG00000072763.3_109825062_109838700_1	chr5	-	483	4	FSM	ENSMUSG00000072763.3	ENSMUST00000092720.4	3341	4	207	2651	207	-2651	multi-exon	FALSE	canonical	3	41	junction_1	21.5148527508066	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTACAAATGCAATCAATG	6338	False	NA	NA	False	NA	NA	NA	109838700	109825061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_109825258_109826379_109826441_109826628_109826756_109838601
ENSMUSG00000072770.10_125026910_125031157_1	chr6	+	1240	5	FSM	ENSMUSG00000072770.10	ENSMUST00000112414.8	1498	5	258	0	0	0	multi-exon	FALSE	canonical	3	86	junction_4	12.3490890352285	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTTGTCGTTGTTCTTT	NA	False	NA	17	True	ACTAAA	-24	NA	125026909	125031157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_125027016_125027396_125027613_125027809_125027905_125028205_125028324_125030452
ENSMUSG00000072772.4_124716149_124718028_1	chr6	-	551	3	FSM	ENSMUSG00000072772.4	ENSMUST00000004389.6	863	3	309	3	0	0	multi-exon	FALSE	canonical	3	807	junction_1	71.5	11059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTTTGTGTCAGTCATT	9252	False	NA	NA	False	AATAAA	-14	NA	124718028	124716148	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124716377_124717481_124717659_124717882
ENSMUSG00000072774.11_104950845_105007666_2	chr5	-	1282	7	NNC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	-7	10190	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_3	86.7437157506077	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGGAAATTTTCTGCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	105007666	104950844	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_104951336_104952168_104952309_104953146_104953426_104963251_104963302_104964564_104964626_104964862_104964990_105007532
ENSMUSG00000072774.11_104963184_105007666_1	chr5	-	440	4	NIC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	-7	-975	combination_of_known_splicesites	FALSE	canonical	3	193	junction_3	15.5134350376268	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGTACTTTATACTGG	NA	False	NA	NA	False	NA	NA	NA	105007666	104963183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_104963302_104964564_104964626_104964862_104964990_105007532
ENSMUSG00000072774.11_104963184_105007666_2	chr5	-	485	5	FSM	ENSMUSG00000072774.11	ENSMUST00000186219.7	2904	5	270	2149	-7	-975	multi-exon	FALSE	canonical	3	35	junction_4	90.557647385519	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGTACTTTATACTGG	NA	False	NA	NA	False	NA	NA	NA	105007666	104963183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_104963302_104964564_104964626_104964862_104964990_104965173_104965219_105007532
ENSMUSG00000072774.11_104963184_105007936_1	chr5	-	710	4	NIC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	0	-975	combination_of_known_splicesites	FALSE	canonical	3	193	junction_3	15.5134350376268	506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGTACTTTATACTGG	NA	False	NA	NA	False	NA	NA	NA	105007936	104963183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_104963302_104964564_104964626_104964862_104964990_105007532
ENSMUSG00000072872.4_100208623_100264264_1	chr6	-	1224	5	FSM	ENSMUSG00000072872.4	ENSMUST00000101118.4	4503	5	182	3097	182	349	multi-exon	FALSE	canonical	3	260	junction_4	17.7552809045647	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGGCAACGCTGGTGCT	NA	False	NA	NA	False	NA	NA	NA	100264264	100208622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_100209387_100209827_100209927_100210023_100210201_100263443_100263570_100264206
ENSMUSG00000072872.4_100208821_100264264_1	chr6	-	1026	5	FSM	ENSMUSG00000072872.4	ENSMUST00000101118.4	4503	5	182	3295	182	151	multi-exon	FALSE	canonical	3	260	junction_4	17.7552809045647	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTGGTTTTGTTTCTGTT	NA	False	NA	NA	False	TATAAA	-36	NA	100264264	100208820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_100209387_100209827_100209927_100210023_100210201_100263443_100263570_100264206
ENSMUSG00000072898.4_59099147_59101565_2	chr11	-	1362	6	NIC	ENSMUSG00000072898.4	novel	471	2	NA	NA	-2019	-75	intron_retention	FALSE	non_canonical	0	0	junction_1	0	626	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCTCTCGCTAACGTGCCC	NA	False	NA	NA	False	NA	NA	NA	59101565	59099146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_59099500_59099645_59099692_59099794_59100027_59100133_59100220_59100798_59100931_59101052
ENSMUSG00000072915.4_58737984_58749238_1	chr11	+	556	5	FSM	ENSMUSG00000072915.4	ENSMUST00000139337.3	4100	5	0	3544	0	-3544	multi-exon	FALSE	canonical	2	9	junction_4	6.04152298679729	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCCTGGGCCACTTAAT	NA	False	NA	NA	False	CATAAA	-21	NA	58737983	58749238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_58738086_58739471_58739529_58745085_58745213_58746886_58746980_58749061
ENSMUSG00000072919.5_87260419_87271891_1	chr12	-	355	3	NNC	ENSMUSG00000072919.5	novel	656	5	NA	NA	8439	7395	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	22.5	28	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGCTTGTCTTTATGAG	NA	False	NA	NA	False	CATAAA	-18	NA	87271891	87260418	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_87260543_87270931_87271084_87271812
ENSMUSG00000072919.5_87267814_87271891_1	chr12	-	859	4	NNC	ENSMUSG00000072919.5	novel	1626	8	NA	NA	8439	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_2	1.69967317119759	717	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACTAGAAAATGATAAAATT	NA	False	NA	NA	False	NA	NA	NA	87271891	87267813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_87268219_87269818_87270042_87270931_87271084_87271812
ENSMUSG00000072919.5_87267814_87271891_2	chr12	-	770	4	NNC	ENSMUSG00000072919.5	novel	1626	8	NA	NA	8439	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	15.7973274814304	201	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACTAGAAAATGATAAAATT	NA	False	NA	NA	False	NA	NA	NA	87271891	87267813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_87268219_87269818_87269953_87270931_87271084_87271812
ENSMUSG00000072919.5_87268029_87271891_3	chr12	-	825	4	ISM	ENSMUSG00000072919.5	ENSMUST00000021423.8	1101	6	8439	0	8439	0	3prime_fragment	FALSE	canonical	2	3	junction_3	18.6607133363712	88	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGAGCCATGAGTTCTGC	NA	False	NA	-70	True	NA	NA	NA	87271891	87268028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_87268219_87269818_87270042_87270931_87271084_87271631
ENSMUSG00000072944.12_138907554_138963042_1	chrX	-	1886	9	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_8	170.821864452417	1298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	-9	True	AATAAA	-16	NA	138963042	138907553	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138962996
ENSMUSG00000072946.13_84332139_84354804_1	chr12	+	1144	7	ISM	ENSMUSG00000072946.13	ENSMUST00000147363.8	1869	9	-9	1923	0	-402	5prime_fragment	FALSE	canonical	3	204	junction_5	24.1827532666476	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGCTCAATATTTAAATC	NA	False	NA	NA	False	AATAAA	-21	NA	84332138	84354804	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549
ENSMUSG00000072946.13_84332139_84360879_1	chr12	+	1098	9	NIC	ENSMUSG00000072946.13	novel	3168	10	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	3	10	junction_5	79.7941688032403	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTGATTCTAGTGTGAT	NA	False	NA	31	True	TTTAAA	-22	NA	84332138	84360879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84354549_84354672_84355118_84355207_84357692_84357733_84360710
ENSMUSG00000072946.13_84332139_84360879_2	chr12	+	1309	10	NNC	ENSMUSG00000072946.13	novel	3168	10	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	79.7618368474796	820	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTGATTCTAGTGTGAT	NA	False	NA	31	True	TTTAAA	-22	NA	84332138	84360879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344982_84349014_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
ENSMUSG00000072946.13_84332174_84339359_1	chr12	+	379	2	ISM	ENSMUSG00000072946.13	ENSMUST00000128158.8	656	4	19	5781	0	-5781	5prime_fragment	FALSE	canonical	3	276	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGACTAGTAAATA	NA	False	NA	NA	False	NA	NA	NA	84332173	84339359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_84332251_84339057
ENSMUSG00000072949.7_84056523_84064448_1	chr12	+	1316	3	FSM	ENSMUSG00000072949.7	ENSMUST00000168120.3	2272	3	259	697	259	0	multi-exon	FALSE	canonical	3	130	junction_1	2	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTGTAACCGAAAATTGT	3078	False	NA	11	True	AATAAA	-22	NA	84056522	84064448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84056741_84061152_84061356_84063553
ENSMUSG00000072955.15_135855737_135858774_1	chrX	-	727	3	FSM	ENSMUSG00000089996.7	ENSMUST00000069803.5	450	3	0	-277	0	277	multi-exon	FALSE	canonical	3	182	junction_2	19	1840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTTGAGCAGATTGCACA	NA	False	NA	NA	False	AATAAA	-17	NA	135858774	135855736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135856232_135857483_135857589_135858647
ENSMUSG00000072955.15_135856014_135877618_1	chrX	-	539	4	FSM	ENSMUSG00000072955.15	ENSMUST00000127404.8	816	4	0	277	0	-277	multi-exon	FALSE	canonical	3	70	junction_2	61.5918465022405	1032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTAACTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	135877618	135856013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135856232_135857483_135857589_135876146_135876252_135877507
ENSMUSG00000072969.3_134643484_134646168_1	chrX	+	874	4	FSM	ENSMUSG00000072969.3	ENSMUST00000096321.3	2779	4	2	1903	0	13	multi-exon	FALSE	canonical	3	91	junction_3	8.05536398239638	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAAGACTAATGCTAGAGT	NA	False	NA	NA	False	AGTAAA	-11	NA	134643483	134646168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_134643728_134644311_134644364_134645247_134645325_134645667
ENSMUSG00000072969.3_134643484_134648071_1	chrX	+	2806	4	NIC	ENSMUSG00000072969.3	novel	2779	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	31.6789449880446	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACATTGTTCCAGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	134643483	134648071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_134643728_134644190_134644272_134645247_134645325_134645667
ENSMUSG00000072980.4_119439993_119448950_1	chr2	-	1519	7	NNC	ENSMUSG00000072980.4	novel	1082	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	249.409970396801	795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAGAATT	7480	False	NA	NA	False	NA	NA	NA	119448950	119439992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_119440234_119440255_119440846_119442232_119442337_119443492_119443575_119446012_119446136_119448334_119448402_119448638
ENSMUSG00000072980.4_119439993_119448950_2	chr2	-	1541	6	FSM	ENSMUSG00000072980.4	ENSMUST00000123818.2	1082	6	0	-459	0	0	multi-exon	FALSE	canonical	3	618	junction_4	35.3870032639103	786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAGAATT	7480	False	NA	NA	False	NA	NA	NA	119448950	119439992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_119440846_119442232_119442337_119443492_119443575_119446012_119446136_119448334_119448402_119448638
ENSMUSG00000072980.4_119440700_119448950_1	chr2	-	834	6	FSM	ENSMUSG00000072980.4	ENSMUST00000123818.2	1082	6	0	248	0	-248	multi-exon	FALSE	canonical	3	618	junction_4	35.3870032639103	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTGTGTCCACTGTTGA	7480	False	NA	NA	False	NA	NA	NA	119448950	119440699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_119440846_119442232_119442337_119443492_119443575_119446012_119446136_119448334_119448402_119448638
ENSMUSG00000073000.4_76491271_76496020_1	chr12	+	1441	2	FSM	ENSMUSG00000073000.4	ENSMUST00000219367.2	855	2	0	-586	0	586	multi-exon	FALSE	canonical	3	44	junction_1	0	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTATAGGGCGATG	NA	False	NA	NA	False	ATTAAA	-17	NA	76491270	76496020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_76491440_76494748
ENSMUSG00000073000.4_76491334_76496307_1	chr12	+	1665	2	FSM	ENSMUSG00000073000.4	ENSMUST00000219367.2	855	2	63	-873	0	873	multi-exon	FALSE	canonical	3	44	junction_1	0	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGTACACTGTAGCTGT	NA	False	NA	NA	False	NA	NA	NA	76491333	76496307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_76491440_76494748
ENSMUSG00000073002.10_72346011_72347329_1	chr6	-	596	2	FSM	ENSMUSG00000073002.10	ENSMUST00000206154.2	2619	2	1789	234	1789	0	multi-exon	FALSE	canonical	2	8	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTCTCTCTCTCTCTCT	494	False	NA	NA	False	AGTAAA	-21	NA	72347329	72346010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72346454_72347176
ENSMUSG00000073079.7_55127311_55138686_1	chr12	+	693	5	NIC	ENSMUSG00000073079.7	novel	428	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	341.194226211406	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCTGTGTGTCTGTGTC	2840	False	NA	NA	False	AATAAA	-22	NA	55127310	55138686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_55127522_55135954_55136065_55136920_55137013_55138033_55138119_55138491
ENSMUSG00000073079.7_55127311_55160065_1	chr12	+	2147	16	FSM	ENSMUSG00000073079.7	ENSMUST00000220578.2	4498	16	264	2087	0	389	multi-exon	FALSE	canonical	3	524	junction_1	133.408578767967	1651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCGTTAACTTTCTTTA	2840	False	NA	NA	False	AATAAA	-20	NA	55127310	55160065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_55127522_55135954_55136065_55136920_55137013_55138033_55138119_55142599_55142705_55143893_55143961_55144040_55144099_55146697_55146849_55148124_55148274_55148607_55148709_55149252_55149340_55151975_55152050_55152401_55152511_55155286_55155458_55157870_55157967_55159584
ENSMUSG00000073079.7_55155432_55160065_1	chr12	+	603	3	ISM	ENSMUSG00000073079.7	ENSMUST00000021407.11	1515	15	19445	-389	19423	389	3prime_fragment	FALSE	canonical	3	830	junction_1	69	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCGTTAACTTTCTTTA	15	False	NA	NA	False	AATAAA	-20	NA	55155431	55160065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_55155458_55157870_55157967_55159584
ENSMUSG00000073125.11_72235813_72238851_1	chrX	+	426	3	ISM	ENSMUSG00000073125.11	ENSMUST00000137641.8	3780	7	0	7685	0	-7675	5prime_fragment	FALSE	canonical	3	1084	junction_1	197	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTCTTTCTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	72235812	72238851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_72235856_72237775_72237913_72238605
ENSMUSG00000073125.11_72235813_72245868_1	chrX	+	921	9	FSM	ENSMUSG00000073125.11	ENSMUST00000101486.5	1564	9	-15	658	0	-658	multi-exon	FALSE	canonical	3	836	junction_5	296.174779479955	701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAGTGCAAATATGTCTG	NA	False	NA	NA	False	AATAAA	-18	NA	72235812	72245868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241077_72241891_72241992_72243351_72243451_72245455_72245552_72245645
ENSMUSG00000073125.11_72235813_72246536_1	chrX	+	2404	8	NIC	ENSMUSG00000073125.11	novel	3780	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	856	junction_4	287.08421576042	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	72235812	72246536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241992_72243351_72243451_72245455_72245552_72245645
ENSMUSG00000073131.13_70860419_70864664_1	chrX	+	492	3	FSM	ENSMUSG00000073131.13	ENSMUST00000114576.9	4195	3	55	3648	0	74	multi-exon	FALSE	canonical	3	286	junction_1	56.5	2325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTCTTAAAGAGTCAGTC	NA	False	NA	27	True	AATAAA	-39	NA	70860418	70864664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_70860547_70863673_70863784_70864410
ENSMUSG00000073131.13_70860419_70866035_1	chrX	+	1863	3	FSM	ENSMUSG00000073131.13	ENSMUST00000114576.9	4195	3	55	2277	0	1445	multi-exon	FALSE	canonical	3	286	junction_1	56.5	2468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGCTATTATTGATTTG	NA	False	NA	NA	False	AATAAA	-16	NA	70860418	70866035	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_70860547_70863673_70863784_70864410
ENSMUSG00000073131.13_70860419_70866580_1	chrX	+	2408	3	FSM	ENSMUSG00000073131.13	ENSMUST00000114576.9	4195	3	55	1732	0	-1732	multi-exon	FALSE	canonical	3	286	junction_1	56.5	2576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCACACTGGTATTTAGA	NA	False	NA	NA	False	AATAAA	-25	NA	70860418	70866580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_70860547_70863673_70863784_70864410
ENSMUSG00000073139.10_69503359_69520759_1	chrX	-	2486	7	FSM	ENSMUSG00000073139.10	ENSMUST00000114630.3	1307	7	27	-1206	-11	0	multi-exon	FALSE	canonical	3	188	junction_5	21.8587638158144	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520759	69503358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510968_69513723_69513901_69520583
ENSMUSG00000073139.10_69503359_69520759_2	chrX	-	2328	7	NIC	ENSMUSG00000073139.10	novel	1307	7	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_5	74.9288551449529	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520759	69503358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510810_69513723_69513901_69520583
ENSMUSG00000073147.4_23627402_23638323_1	chr5	-	615	2	NIC	ENSMUSG00000073147.4	novel	719	3	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	0	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGACATTTTATTTGGAAT	NA	False	NA	NA	False	NA	NA	NA	23638323	23627401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_23627901_23638207
ENSMUSG00000073155.13_35229651_35238957_1	chr6	+	985	3	FSM	ENSMUSG00000073155.13	ENSMUST00000152147.8	2521	3	62	1474	0	0	multi-exon	FALSE	canonical	3	978	junction_2	33.5	10423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTGGTAAAGTGAGT	NA	False	NA	NA	False	NA	NA	NA	35229650	35238957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_35229718_35237344_35237399_35238093
ENSMUSG00000073155.13_35229667_35238574_1	chr6	+	586	3	FSM	ENSMUSG00000073155.13	ENSMUST00000152147.8	2521	3	78	1857	0	2	multi-exon	FALSE	canonical	3	978	junction_2	33.5	9306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCTGGTGAATTAATCCA	NA	False	NA	15	True	ATTAAA	-19	NA	35229666	35238574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_35229718_35237344_35237399_35238093
ENSMUSG00000073164.12_23009678_23051434_1	chr12	-	883	4	NNC	ENSMUSG00000073164.12	novel	3370	5	NA	NA	8565	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9.56846672960488	671	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCCCAGCTGAGCTCATC	NA	False	NA	-7	True	NA	NA	NA	23051434	23009677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_23010256_23042788_23042850_23043051_23043179_23051317
ENSMUSG00000073184.5_19342814_19359090_1	chr12	+	733	4	NNC	ENSMUSG00000073184.5	novel	241	3	NA	NA	0	7825	at_least_one_novel_splicesite	FALSE	canonical	2	24	junction_3	2.62466929133727	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAAGAAAAGAATA	NA	False	NA	NA	False	NA	NA	NA	19342813	19359090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_19342877_19350884_19351012_19351214_19351276_19358608
ENSMUSG00000073207.2_51881947_51888351_1	chrX	+	1516	2	NNC	ENSMUSG00000073207.2	novel	1536	2	NA	NA	1870	6	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	0	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCCTGTGATTCTTGAAA	NA	False	NA	NA	False	AATAAA	-29	NA	51881946	51888351	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_51882047_51886935
ENSMUSG00000073245.11_34677386_34690747_1	chrX	+	617	6	NNC	ENSMUSG00000073245.11	novel	928	9	NA	NA	7939	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.8262252939418	398	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTTTGAAAGGCTCTTT	NA	False	NA	NA	False	AATAAA	-32	NA	34677385	34690747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_34677440_34678902_34679029_34679340_34679405_34687606_34687689_34690137_34690237_34690555
ENSMUSG00000073295.5_5960371_5966805_1	chrX	+	1813	2	FSM	ENSMUSG00000073295.5	ENSMUST00000103007.4	3036	2	864	359	864	-359	multi-exon	FALSE	canonical	3	23	junction_1	0	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTTAGAAGTTACTTGGA	NA	False	NA	14	True	NA	NA	NA	5960370	5966805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_5960459_5965080
ENSMUSG00000073406.11_36391007_36394382_1	chr17	-	1085	4	NNC	ENSMUSG00000073406.11	novel	995	6	NA	NA	703	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_3	238.706235081254	716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTATGTTTCCTGCAT	NA	False	NA	-5	True	AATAAA	-22	NA	36394382	36391006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_36391216_36391890_36392008_36392133_36392410_36393899
ENSMUSG00000073411.13_35482072_35486332_1	chr17	+	1593	8	FSM	ENSMUSG00000073411.13	ENSMUST00000172785.8	2102	8	366	143	0	3	multi-exon	FALSE	canonical	3	37	junction_3	6.54341856605645	655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAAGTGACCTTGATTG	2085	False	NA	NA	False	NA	NA	NA	35482071	35486332	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35482163_35482354_35482625_35482814_35483091_35484759_35485036_35485162_35485280_35485457_35485491_35485663_35485703_35485841
ENSMUSG00000073411.13_35482072_35486475_1	chr17	+	1736	8	FSM	ENSMUSG00000073411.13	ENSMUST00000172785.8	2102	8	366	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	6.54341856605645	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTCACTATGCTGTGT	2085	False	NA	26	True	AATAAA	-25	NA	35482071	35486475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35482163_35482354_35482625_35482814_35483091_35484759_35485036_35485162_35485280_35485457_35485491_35485663_35485703_35485841
ENSMUSG00000073412.7_35404071_35405705_1	chr17	-	361	2	ISM	ENSMUSG00000073412.7	ENSMUST00000097336.5	415	4	1710	0	1710	0	3prime_fragment	FALSE	canonical	3	9	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGCTTCTCTATATGTGT	NA	False	NA	NA	False	AGTAAA	-22	NA	35405705	35404070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_35404287_35405560
ENSMUSG00000073413.10_35290419_35296195_1	chr17	-	525	3	NNC	ENSMUSG00000073413.10	novel	546	3	NA	NA	837	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	7	123	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATTGATGAACTATTCT	NA	False	NA	NA	False	NA	NA	NA	35296195	35290418	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_35290736_35293150_35293289_35296125
ENSMUSG00000073413.10_35295878_35297780_1	chr17	-	1005	4	Genic_Genomic	ENSMUSG00000073413.10	novel	690	3	NA	NA	-739	-2689	multi-exon	FALSE	non_canonical	0	0	junction_1	0	881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTTGTGTCTGCCGCCTT	NA	False	NA	NA	False	NA	NA	NA	35297780	35295877	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_-_35295967_35296110_35296183_35296812_35296911_35297034
ENSMUSG00000073413.10_35295878_35297780_2	chr17	-	974	4	Genic_Genomic	ENSMUSG00000073413.10	novel	690	3	NA	NA	-739	-2689	multi-exon	FALSE	non_canonical	0	0	junction_1	0	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTTGTGTCTGCCGCCTT	NA	False	NA	NA	False	NA	NA	NA	35297780	35295877	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_-_35295936_35296110_35296183_35296812_35296911_35297034
ENSMUSG00000073423.11_33848064_33850690_1	chr17	+	1238	7	NIC	ENSMUSG00000073423.11	novel	1211	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	176.614143135694	1894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTACCTATGCCTTC	4917	False	NA	29	True	AATACA	-19	NA	33848063	33850690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_33848191_33848595_33848673_33848743_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
ENSMUSG00000073423.11_33848064_33850690_2	chr17	+	1227	7	NIC	ENSMUSG00000073423.11	novel	1211	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_2	175.009206107057	1939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTACCTATGCCTTC	4917	False	NA	29	True	AATACA	-19	NA	33848063	33850690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_33848191_33848595_33848673_33848754_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
ENSMUSG00000073435.11_25115479_25116476_1	chr17	+	683	5	FSM	ENSMUSG00000073435.11	ENSMUST00000150500.8	516	5	0	-167	0	18	multi-exon	FALSE	canonical	2	2	junction_1	84.0922112921286	905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGCGCTGGTGAAGTTTC	NA	False	NA	16	True	AATAAA	-15	NA	25115478	25116476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25115534_25115608_25115733_25115825_25115928_25116001_25116115_25116187
ENSMUSG00000073435.11_25115479_25116476_2	chr17	+	559	4	NIC	ENSMUSG00000073435.11	novel	516	5	NA	NA	0	18	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	88.6002257333467	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGCGCTGGTGAAGTTTC	NA	False	NA	16	True	AATAAA	-15	NA	25115478	25116476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_25115534_25115825_25115928_25116001_25116115_25116187
ENSMUSG00000073435.11_25115479_25116476_3	chr17	+	654	5	NNC	ENSMUSG00000073435.11	novel	516	5	NA	NA	0	18	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	82.368076340291	214	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGCGCTGGTGAAGTTTC	NA	False	NA	16	True	AATAAA	-15	NA	25115478	25116476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_25115534_25115637_25115733_25115825_25115928_25116001_25116115_25116187
ENSMUSG00000073435.11_25115479_25116476_4	chr17	+	653	5	NNC	ENSMUSG00000073435.11	novel	715	5	NA	NA	0	18	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	80.9706737035082	159	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGCGCTGGTGAAGTTTC	NA	False	NA	16	True	AATAAA	-15	NA	25115478	25116476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_25115534_25115601_25115733_25115825_25115928_25116001_25116078_25116187
ENSMUSG00000073436.12_25105676_25111123_1	chr17	-	1582	7	NIC	ENSMUSG00000073436.12	novel	5226	7	NA	NA	2036	1784	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCCCCGCCCCCGCCCTGC	4802	False	NA	NA	False	NA	NA	NA	25111123	25105675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_25105735_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
ENSMUSG00000073436.12_25105676_25111123_2	chr17	-	1529	7	NNC	ENSMUSG00000073436.12	novel	5226	7	NA	NA	2036	1784	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	123	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCCCCGCCCCCGCCCTGC	4802	False	NA	NA	False	NA	NA	NA	25111123	25105675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_25105735_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25110037_25110111_25110333
ENSMUSG00000073460.6_13107616_13128833_1	chr17	-	1793	19	NNC	ENSMUSG00000073460.6	novel	2004	19	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_18	32.7598821204108	394	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTACATGGCCAGTGC	2974	False	NA	-8	True	GATAAA	-20	NA	13128833	13107615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113303_13114398_13114485_13116147_13116218_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125425_13127939_13128014_13128348_13128407_13128737
ENSMUSG00000073468.13_8529941_8546274_2	chr17	+	1033	7	NNC	ENSMUSG00000073468.13	novel	1049	8	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	308.1235773012	2390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCTGGATCAACTGTA	2930	False	NA	NA	False	AATAAA	-19	NA	8529940	8546274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_8530118_8537675_8537763_8538250_8538334_8539431_8539514_8540631_8540668_8542108_8542189_8545786
ENSMUSG00000073468.13_8529941_8546274_3	chr17	+	1029	7	NNC	ENSMUSG00000073468.13	novel	1049	8	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	308.1235773012	1025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCTGGATCAACTGTA	2930	False	NA	NA	False	AATAAA	-19	NA	8529940	8546274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_8530118_8537675_8537763_8538250_8538334_8539431_8539514_8540631_8540668_8542108_8542168_8545769
ENSMUSG00000073468.13_8530001_8546274_2	chr17	+	605	2	NIC	ENSMUSG00000073468.13	novel	810	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	0	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCTGGATCAACTGTA	2990	False	NA	NA	False	AATAAA	-19	NA	8530000	8546274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_8530118_8545786
ENSMUSG00000073468.13_8530001_8546274_3	chr17	+	946	7	NIC	ENSMUSG00000073468.13	novel	1049	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_4	307.717222281901	963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCTGGATCAACTGTA	2990	False	NA	NA	False	AATAAA	-19	NA	8530000	8546274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_8530118_8537675_8537763_8538250_8538334_8539431_8539514_8542108_8542168_8543265_8543296_8545786
ENSMUSG00000073468.13_8530001_8546274_4	chr17	+	976	8	NNC	ENSMUSG00000073468.13	novel	1049	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	287.204186769551	3320	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCTGGATCAACTGTA	2990	False	NA	NA	False	AATAAA	-19	NA	8530000	8546274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_8530118_8537675_8537763_8538250_8538334_8539431_8539514_8540631_8540668_8542108_8542168_8543271_8543296_8545786
ENSMUSG00000073471.4_8164827_8198336_1	chr17	+	1527	8	FSM	ENSMUSG00000073471.4	ENSMUST00000097423.3	2189	8	342	320	0	0	multi-exon	TRUE	canonical	3	57	junction_4	7.41482244134913	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTTTTCATTTATTTAAC	NA	False	NA	NA	False	NA	NA	NA	8164826	8198336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_8165136_8171380_8171469_8188978_8189121_8191655_8191802_8192768_8192973_8194876_8195040_8197549_8197637_8197948
ENSMUSG00000073478.7_190956671_190957884_1	chr1	+	548	2	FSM	ENSMUSG00000073478.7	ENSMUST00000139056.3	716	2	20	148	0	-148	multi-exon	FALSE	canonical	3	14	junction_1	0	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTTCAGTTTCTTCT	NA	False	NA	11	True	GATAAA	-17	NA	190956670	190957884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_190956740_190957405
ENSMUSG00000073481.10_184545889_184554851_1	chr1	-	577	4	FSM	ENSMUSG00000073481.10	ENSMUST00000161341.8	968	4	381	10	381	0	multi-exon	FALSE	canonical	3	891	junction_1	38.0555150040335	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGAATGCTACACCC	NA	False	NA	-24	True	AATAAA	-17	NA	184554851	184545888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685
ENSMUSG00000073481.10_184545889_184556795_1	chr1	-	574	5	NNC	ENSMUSG00000073481.10	novel	633	5	NA	NA	-1563	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	410.378179244462	202	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGAATGCTACACCC	NA	False	NA	-24	True	AATAAA	-17	NA	184556795	184545888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184556694
ENSMUSG00000073481.10_184545889_184568785_1	chr1	-	879	7	NNC	ENSMUSG00000073481.10	novel	1917	8	NA	NA	8983	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_6	343.867060876083	279	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGAATGCTACACCC	NA	False	NA	-24	True	AATAAA	-17	NA	184568785	184545888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184564772_184564914_184566056_184566226_184568689
ENSMUSG00000073481.10_184545889_184577858_1	chr1	-	1073	8	FSM	ENSMUSG00000073481.10	ENSMUST00000068725.10	1917	8	220	624	-90	0	multi-exon	FALSE	canonical	3	760	junction_6	70.0437181264644	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGAATGCTACACCC	NA	False	NA	-24	True	AATAAA	-17	NA	184577858	184545888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184564772_184564914_184566056_184566226_184573450_184573625_184577742
ENSMUSG00000073481.10_184545889_184578005_1	chr1	-	1220	8	FSM	ENSMUSG00000073481.10	ENSMUST00000068725.10	1917	8	73	624	0	0	multi-exon	FALSE	canonical	3	760	junction_6	70.0437181264644	782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGAATGCTACACCC	NA	False	NA	-24	True	AATAAA	-17	NA	184578005	184545888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184564772_184564914_184566056_184566226_184573450_184573625_184577742
ENSMUSG00000073538.11_153281993_153283536_1	chr1	-	544	2	FSM	ENSMUSG00000073538.11	ENSMUST00000186785.7	1964	2	0	1420	0	0	multi-exon	FALSE	canonical	3	87	junction_1	0	1548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGAGGGGTGTGGCCTGC	NA	False	NA	NA	False	NA	NA	NA	153283536	153281992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_153282348_153283347
ENSMUSG00000073538.11_153282191_153283536_1	chr1	-	346	2	FSM	ENSMUSG00000073538.11	ENSMUST00000186785.7	1964	2	0	1618	0	-198	multi-exon	FALSE	canonical	3	87	junction_1	0	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTCTGTGTTCCTGAAA	NA	False	NA	NA	False	NA	NA	NA	153283536	153282190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_153282348_153283347
ENSMUSG00000073609.10_93752962_93754473_1	chr1	+	808	2	ISM	ENSMUSG00000073609.10	ENSMUST00000112881.8	3459	10	-34	25597	0	293	5prime_fragment	FALSE	canonical	2	4	junction_1	0	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACTTGGCTAAAGTGAGCA	NA	False	NA	NA	False	AATAAA	-22	NA	93752961	93754473	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_93753303_93754006
ENSMUSG00000073609.10_93752962_93776090_1	chr1	+	1550	9	ISM	ENSMUSG00000073609.10	ENSMUST00000097633.10	3232	10	0	3980	0	-3980	5prime_fragment	FALSE	canonical	3	12	junction_1	12.5573683548744	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATTGCTGTCACATGAAA	NA	False	NA	NA	False	NA	NA	NA	93752961	93776090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_93753042_93754006_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824
ENSMUSG00000073616.11_92564867_92569670_1	chr1	-	466	4	NNC	ENSMUSG00000073616.11	novel	649	3	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	277.022662530623	7155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGCTTTTAGATGCA	NA	False	NA	-19	True	AATAAA	-30	NA	92569670	92564866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_92565126_92567408_92567482_92569328_92569394_92569601
ENSMUSG00000073639.7_6765203_6789741_1	chr18	+	1769	7	FSM	ENSMUSG00000073639.7	ENSMUST00000234810.2	6515	7	58	4688	0	501	multi-exon	FALSE	canonical	3	943	junction_6	99.6015673683011	1074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTTTTCTAACTCCTTG	7	True	NA	19	True	AATAAA	-15	NA	6765202	6789741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_6765333_6770053_6770110_6778494_6778557_6783119_6783193_6784569_6784689_6784938_6785006_6788479
ENSMUSG00000073639.7_6765203_6789951_1	chr18	+	1979	7	FSM	ENSMUSG00000073639.7	ENSMUST00000234810.2	6515	7	58	4478	0	711	multi-exon	FALSE	canonical	3	943	junction_6	99.6015673683011	2067	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTTACTGGGTTTA	7	True	NA	11	True	GATAAA	-21	NA	6765202	6789951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_6765333_6770053_6770110_6778494_6778557_6783119_6783193_6784569_6784689_6784938_6785006_6788479
ENSMUSG00000073639.7_6765203_6790183_1	chr18	+	2211	7	FSM	ENSMUSG00000073639.7	ENSMUST00000234810.2	6515	7	58	4246	0	943	multi-exon	FALSE	canonical	3	943	junction_6	99.6015673683011	3055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTGTGTCTTGTCTGTC	7	True	NA	19	True	ATTAAA	-16	NA	6765202	6790183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_6765333_6770053_6770110_6778494_6778557_6783119_6783193_6784569_6784689_6784938_6785006_6788479
ENSMUSG00000073643.12_79681739_79739456_1	chr1	-	2761	12	FSM	ENSMUSG00000073643.12	ENSMUST00000113512.8	4551	12	30	1760	-1	1335	multi-exon	FALSE	canonical	3	564	junction_7	59.0382982576312	1673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79739456	79681738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
ENSMUSG00000073643.12_79683074_79739456_1	chr1	-	1426	12	FSM	ENSMUSG00000073643.12	ENSMUST00000113512.8	4551	12	30	3095	-1	0	multi-exon	FALSE	canonical	3	564	junction_7	59.0382982576312	1161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTTTGGGGGTATTTG	NA	False	NA	-31	True	TATAAA	-1	NA	79739456	79683073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
ENSMUSG00000073652.11_71691996_71696616_1	chr1	+	600	2	NNC	ENSMUSG00000073652.11	novel	826	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGGTGTCAGTAGTCAT	NA	False	NA	NA	False	AGTAAA	-28	NA	71691995	71696616	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_71692183_71696203
ENSMUSG00000073652.11_71692494_71696406_1	chr1	+	255	2	ISM	ENSMUSG00000073652.11	ENSMUST00000097699.3	826	3	498	210	0	2	3prime_fragment	FALSE	canonical	3	20	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTCTGTTGGCAATTT	NA	False	NA	NA	False	TTTAAA	-6	NA	71692493	71696406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_71692546_71696203
ENSMUSG00000073664.12_60219758_60239345_1	chr1	+	715	5	ISM	ENSMUSG00000073664.12	ENSMUST00000160834.8	15731	55	0	138142	0	14288	5prime_fragment	FALSE	canonical	3	9	junction_2	5.58457697592217	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGTGTGAATACATTCCT	NA	False	NA	3	True	NA	NA	NA	60219757	60239345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_60219845_60220621_60220914_60233662_60233755_60234173_60234336_60239263
ENSMUSG00000073676.5_55127473_55130466_1	chr1	+	592	4	FSM	ENSMUSG00000073676.5	ENSMUST00000075242.7	774	4	182	0	0	0	multi-exon	FALSE	canonical	3	7281	junction_2	538.928154354136	165414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGACAGTCTTTGGTAATT	NA	False	NA	13	True	AATAAA	-14	NA	55127472	55130466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_55127572_55128209_55128375_55129871_55129962_55130228
ENSMUSG00000073676.5_55127473_55130466_2	chr1	+	586	4	NNC	ENSMUSG00000073676.5	novel	774	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3643.71882681539	155764	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGACAGTCTTTGGTAATT	NA	False	NA	13	True	AATAAA	-14	NA	55127472	55130466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_55127566_55128209_55128375_55129871_55129962_55130228
ENSMUSG00000073684.14_155334259_155341144_1	chr4	+	1141	4	NIC	ENSMUSG00000073684.14	novel	839	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	99.2986516636667	748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTTCCTTCATAGCAA	NA	False	NA	8	True	NA	NA	NA	155334258	155341144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_155334421_155334962_155335108_155335212_155335494_155340591
ENSMUSG00000073684.14_155334259_155341144_2	chr4	+	1102	4	FSM	ENSMUSG00000073684.14	ENSMUST00000149468.8	783	4	-95	-224	0	0	multi-exon	FALSE	canonical	2	2	junction_1	98.8275715015242	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTTCCTTCATAGCAA	NA	False	NA	8	True	NA	NA	NA	155334258	155341144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155334421_155335001_155335108_155335212_155335494_155340591
ENSMUSG00000073684.14_155334446_155341144_1	chr4	+	1014	4	FSM	ENSMUSG00000073684.14	ENSMUST00000105627.8	710	4	0	-304	0	0	multi-exon	FALSE	canonical	2	17	junction_1	91.7617688485909	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTTCCTTCATAGCAA	NA	False	NA	8	True	NA	NA	NA	155334445	155341144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155334520_155335001_155335108_155335212_155335494_155340591
ENSMUSG00000073702.12_39407010_39410447_1	chr1	+	494	5	NNC	ENSMUSG00000073702.12	novel	487	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_1	5012.72253246676	143451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	26	True	AATAAA	-15	NA	39407009	39410447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_39407093_39407229_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUSG00000073705.11_149212887_149222039_1	chr4	-	831	5	FSM	ENSMUSG00000073705.11	ENSMUST00000030813.10	1110	5	47	232	-5	110	multi-exon	FALSE	canonical	3	344	junction_3	40.8923892674419	1808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGCTGCTGTGGCTTCA	NA	False	NA	-34	True	AATAAA	-19	NA	149222039	149212886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_149213386_149214609_149214677_149216095_149216130_149216715_149216840_149221932
ENSMUSG00000073705.11_149212887_149222039_3	chr4	-	812	5	FSM	ENSMUSG00000073705.11	ENSMUST00000177408.2	689	5	-13	-110	-5	110	multi-exon	FALSE	canonical	3	47	junction_3	159.066809863026	1618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGCTGCTGTGGCTTCA	NA	False	NA	-34	True	AATAAA	-19	NA	149222039	149212886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_149213386_149214609_149214677_149216095_149216130_149216734_149216840_149221932
ENSMUSG00000073705.11_149212997_149222039_1	chr4	-	721	5	FSM	ENSMUSG00000073705.11	ENSMUST00000030813.10	1110	5	47	342	-5	0	multi-exon	FALSE	canonical	3	344	junction_3	40.8923892674419	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGCAATCAGCTGTGCTG	NA	False	NA	-144	True	NA	NA	NA	149222039	149212996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_149213386_149214609_149214677_149216095_149216130_149216715_149216840_149221932
ENSMUSG00000073725.9_24717820_24802113_1	chr1	+	1928	16	FSM	ENSMUSG00000073725.9	ENSMUST00000191471.7	4453	16	109	2416	0	639	multi-exon	FALSE	canonical	3	113	junction_9	21.4185796810983	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCCCTTTGTTGCTTTTA	NA	False	NA	NA	False	ATTAAA	-16	NA	24717819	24802113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_24717898_24724477_24724655_24732021_24732083_24743901_24744000_24745057_24745126_24750592_24750682_24753989_24754064_24767626_24767753_24770827_24770981_24782963_24783029_24783336_24783440_24783946_24784052_24785885_24786036_24787880_24787960_24801272_24801365_24801703
ENSMUSG00000073771.12_116976416_116978500_1	chr4	-	1749	2	ISM	ENSMUSG00000073771.12	ENSMUST00000153924.8	1956	4	1027	0	-38	0	3prime_fragment	FALSE	canonical	3	41	junction_1	0	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTAATGTCAGCATTCAA	NA	False	NA	-14	True	NA	NA	NA	116978500	116976415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_116978059_116978394
ENSMUSG00000073771.12_116977074_116978500_1	chr4	-	1091	2	ISM	ENSMUSG00000073771.12	ENSMUST00000153924.8	1956	4	1027	658	-38	0	3prime_fragment	FALSE	canonical	3	41	junction_1	0	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATGAATATTTGTATTC	NA	False	NA	-24	True	NA	NA	NA	116978500	116977073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_116978059_116978394
ENSMUSG00000073771.12_116977074_116982875_1	chr4	-	1978	8	FSM	ENSMUSG00000073771.12	ENSMUST00000183310.2	1620	8	-60	-298	-20	0	multi-exon	FALSE	canonical	2	11	junction_7	6.73401357108153	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATGAATATTTGTATTC	9687	False	NA	-24	True	NA	NA	NA	116982875	116977073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_116978059_116978167_116978294_116978394_116978527_116978610_116978680_116979415_116979476_116980925_116980980_116981135_116981338_116982525
ENSMUSG00000073792.12_99603913_99627716_1	chr4	+	675	5	ISM	ENSMUSG00000073792.12	ENSMUST00000144805.8	3947	14	11	22832	0	6	5prime_fragment	FALSE	canonical	3	166	junction_1	24.1557446583623	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAGAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	99603912	99627716	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450
ENSMUSG00000073888.14_41760454_41769474_1	chr4	-	1751	13	NIC	ENSMUSG00000073888.14	novel	590	6	NA	NA	738	9013	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGCGCCAATAGAAAGAGAG	4696	False	NA	NA	False	NA	NA	NA	41769474	41760453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_41760552_41763581_41763682_41763824_41763886_41764708_41764879_41765006_41765122_41765274_41765308_41765385_41765553_41766110_41766275_41767459_41767602_41767945_41768072_41768168_41768266_41768492_41768576_41769079
ENSMUSG00000073888.14_41769478_41774169_2	chr4	-	661	6	NIC	ENSMUSG00000073888.14	novel	590	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_3	33.9823483591114	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCCAAAAACTTCCGTCT	1	True	NA	-6	True	AATAAA	-17	NA	41774169	41769477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_41769655_41769843_41769977_41771137_41771291_41773464_41773525_41773735_41773804_41774099
ENSMUSG00000073888.14_41773188_41774107_1	chr4	-	374	4	NNC	ENSMUSG00000073888.14	novel	350	4	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	39.8246155034798	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCACTGCCTCCCTGACTT	63	False	NA	NA	False	ATTAAA	-14	NA	41774107	41773187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_41773351_41773464_41773525_41773735_41773804_41774024
ENSMUSG00000073888.14_41773188_41774169_1	chr4	-	475	3	FSM	ENSMUSG00000073888.14	ENSMUST00000133572.8	798	3	30	293	0	0	multi-exon	FALSE	canonical	3	80	junction_2	8.5	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCACTGCCTCCCTGACTT	1	True	NA	NA	False	ATTAAA	-14	NA	41774169	41773187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_41773525_41773735_41773804_41774099
ENSMUSG00000073987.5_20042052_20066109_1	chr4	+	1402	10	NNC	ENSMUSG00000073987.5	novel	1965	9	NA	NA	0	-641	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	35.0980988546371	931	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTGTCTGTGATTATTG	-25	True	NA	NA	False	AATACA	-15	NA	20042051	20066109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_20042283_20046202_20046315_20049791_20049843_20052663_20052749_20054063_20054203_20057775_20057854_20057936_20058044_20058138_20058230_20063998_20064137_20065739
ENSMUSG00000073987.5_20042052_20066109_2	chr4	+	1324	9	FSM	ENSMUSG00000073987.5	ENSMUST00000098242.4	1965	9	0	641	0	-641	multi-exon	FALSE	canonical	3	51	junction_6	14.9080515158756	954	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTGTCTGTGATTATTG	-25	True	NA	NA	False	AATACA	-15	NA	20042051	20066109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_20042283_20046202_20046315_20049791_20049843_20052663_20052749_20054063_20054203_20057936_20058044_20058138_20058230_20063998_20064137_20065739
ENSMUSG00000073987.5_20042052_20066109_3	chr4	+	1318	9	NNC	ENSMUSG00000073987.5	novel	1965	9	NA	NA	0	-641	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	26.8208757314149	932	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTGTCTGTGATTATTG	-25	True	NA	NA	False	AATACA	-15	NA	20042051	20066109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_20042283_20046208_20046315_20049791_20049843_20052663_20052749_20054063_20054203_20057936_20058044_20058138_20058230_20063998_20064137_20065739
ENSMUSG00000074039.11_114197371_114198131_1	chr9	+	313	3	ISM	ENSMUSG00000074039.11	ENSMUST00000124664.8	1285	4	0	8166	0	-2101	5prime_fragment	FALSE	canonical	3	21	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATGTATGAAATCTAGATT	NA	False	NA	NA	False	ATTAAA	-19	NA	114197370	114198131	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_114197553_114197911_114197968_114198056
ENSMUSG00000074039.11_114197371_114198134_1	chr9	+	370	3	NNC	ENSMUSG00000074039.11	novel	1285	4	NA	NA	0	-2098	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	7	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATGAAATCTAGATTGAC	NA	False	NA	NA	False	ATTAAA	-22	NA	114197370	114198134	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_114197553_114197857_114197968_114198056
ENSMUSG00000074052.8_122642865_122654213_1	chr8	+	906	6	NIC	ENSMUSG00000074052.8	novel	3522	2	NA	NA	8293	7784	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	186	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCAGGTTCACACTAAGG	NA	False	NA	NA	False	NA	NA	NA	122642864	122654213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_122643247_122644726_122644883_122650293_122650357_122650505_122650602_122653821_122653941_122654123
ENSMUSG00000074071.12_67925743_67975225_1	chr7	+	528	5	NNC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	0	-28169	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	58.8451357377991	95	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGCCTTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	67925742	67975225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_67925790_67950580_67950712_67954299_67954400_67971567_67971654_67975061
ENSMUSG00000074093.5_51646919_51655597_1	chr7	-	2884	4	FSM	ENSMUSG00000074093.5	ENSMUST00000098414.5	3053	4	169	0	-1	0	multi-exon	FALSE	canonical	3	84	junction_2	8.05536398239638	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGGCAAGAGTTAGATGCA	NA	False	NA	-19	True	AATAAA	-17	NA	51655597	51646918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_51649526_51653093_51653208_51653682_51653734_51655485
ENSMUSG00000074093.5_51649360_51655597_2	chr7	-	443	4	FSM	ENSMUSG00000074093.5	ENSMUST00000098414.5	3053	4	169	2441	-1	0	multi-exon	FALSE	canonical	3	84	junction_2	8.05536398239638	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAATATTGGTAATATT	NA	False	NA	NA	False	AATATA	-9	NA	51655597	51649359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_51649526_51653093_51653208_51653682_51653734_51655485
ENSMUSG00000074129.15_44775194_44778160_1	chr7	-	810	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	25	212	0	102	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	342352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGAGCTTCAGTGTTG	NA	False	NA	-8	True	ATTAAA	-20	NA	44778160	44775193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ENSMUSG00000074129.15_44775347_44778160_1	chr7	-	729	7	NIC	ENSMUSG00000074129.15	novel	734	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	332	junction_3	7433.61662576763	13346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGGCCTGCCCT	NA	False	NA	-6	True	AATAAA	-14	NA	44778160	44775346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776414_44776517_44776632_44776699_44776919_44776993_44777965
ENSMUSG00000074129.15_44775347_44778160_2	chr7	-	651	8	NNC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	5965.14237474852	276129	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGGCCTGCCCT	NA	False	NA	-6	True	AATAAA	-14	NA	44778160	44775346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_44775457_44775538_44775662_44775901_44775956_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ENSMUSG00000074136.10_96491562_96534061_1	chr8	+	1535	11	NIC	ENSMUSG00000074136.10	novel	2803	4	NA	NA	-41810	-2768	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGGCGCCCGAGGTCGC	NA	False	NA	NA	False	NA	NA	NA	96491561	96534061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
ENSMUSG00000074158.10_42263452_42292017_1	chr7	-	498	4	FSM	ENSMUSG00000074158.10	ENSMUST00000098503.9	1976	4	-46	1524	-5	-1524	multi-exon	FALSE	canonical	3	68	junction_3	11.7284080571728	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTACAAATGTAATGAATG	NA	False	NA	NA	False	NA	NA	NA	42292017	42263451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_42263648_42265396_42265458_42265656_42265784_42291903
ENSMUSG00000074165.11_41282982_41297825_3	chr7	+	642	5	NIC	ENSMUSG00000074165.11	novel	3177	6	NA	NA	0	43	combination_of_known_splicesites	FALSE	canonical	3	14	junction_2	14.5344418537486	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTAGGTCTTATAACGTT	NA	False	NA	NA	False	AATATA	-18	NA	41282981	41297825	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_41283119_41292756_41292857_41296906_41297042_41297242_41297304_41297616
ENSMUSG00000074165.11_41282982_41298240_1	chr7	+	1057	5	NIC	ENSMUSG00000074165.11	novel	3177	6	NA	NA	0	-181	combination_of_known_splicesites	FALSE	canonical	3	14	junction_2	14.5344418537486	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTTATAAATGTCATTATT	NA	False	NA	NA	False	NA	NA	NA	41282981	41298240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_41283119_41292756_41292857_41296906_41297042_41297242_41297304_41297616
ENSMUSG00000074170.6_37920097_37927440_1	chr7	-	1562	2	FSM	ENSMUSG00000074170.6	ENSMUST00000098513.6	5263	2	0	3701	0	-3701	multi-exon	FALSE	canonical	3	140	junction_1	0	388	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTTGATTGTTAAGAGT	NA	False	NA	-20	True	NA	NA	NA	37927440	37920096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_37921583_37927364
ENSMUSG00000074179.12_78201275_78212807_1	chr9	+	922	7	ISM	ENSMUSG00000074179.12	ENSMUST00000119823.8	993	8	4070	0	-4025	0	3prime_fragment	FALSE	canonical	1	2	junction_5	10.2794292967395	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTCATAAGTTCTA	3144	False	NA	NA	False	AATAAA	-17	NA	78201274	78212807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_+_78201398_78202065_78202175_78205380_78205433_78206218_78206352_78209967_78210110_78211653_78211786_78212576
ENSMUSG00000074182.9_145281987_145309873_1	chr3	+	1098	11	NNC	ENSMUSG00000074182.9	novel	1127	11	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	246.430537880353	6317	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCATGTTACTGCCTTTTG	NA	False	NA	54	True	ATTAAA	-28	NA	145281986	145309873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_145282049_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298577_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ENSMUSG00000074182.9_145281987_145309873_2	chr3	+	1230	11	NIC	ENSMUSG00000074182.9	novel	2339	10	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	227.48013100049	6184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCATGTTACTGCCTTTTG	NA	False	NA	54	True	ATTAAA	-28	NA	145281986	145309873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_145282174_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ENSMUSG00000074182.9_145281987_145309873_3	chr3	+	1662	10	FSM	ENSMUSG00000074182.9	ENSMUST00000098534.9	2339	10	0	677	0	5	multi-exon	FALSE	canonical	3	657	junction_9	57.8243402122986	3836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCATGTTACTGCCTTTTG	NA	False	NA	54	True	ATTAAA	-28	NA	145281986	145309873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ENSMUSG00000074182.9_145281987_145309873_4	chr3	+	1070	10	NIC	ENSMUSG00000074182.9	novel	1127	11	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	245.375348656696	3254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCATGTTACTGCCTTTTG	NA	False	NA	54	True	ATTAAA	-28	NA	145281986	145309873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_145282049_145282605_145282752_145283975_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ENSMUSG00000074182.9_145281987_145309873_5	chr3	+	1171	11	NIC	ENSMUSG00000074182.9	novel	2339	10	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	233.890765102002	6740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCATGTTACTGCCTTTTG	NA	False	NA	54	True	ATTAAA	-28	NA	145281986	145309873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_145282115_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ENSMUSG00000074217.9_84736851_84738067_1	chr8	-	631	3	FSM	ENSMUSG00000074217.9	ENSMUST00000190457.2	1351	3	720	0	-27	0	multi-exon	FALSE	canonical	3	145	junction_2	17	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGTGCAAGCTATTTTC	8253	False	NA	-9	True	AATAAA	-22	NA	84738067	84736850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84737122_84737339_84737402_84737769
ENSMUSG00000074220.11_29821395_29829578_1	chr7	+	279	3	NNC	ENSMUSG00000074220.11	novel	325	3	NA	NA	0	-663	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	23	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATGTATTTTCTCCGTG	5287	False	NA	NA	False	ATTAAA	-14	NA	29821394	29829578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_29821502_29825192_29825267_29829480
ENSMUSG00000074221.13_29683380_29688924_1	chr7	+	1017	4	NIC	ENSMUSG00000074221.13	novel	4005	10	NA	NA	0	247	combination_of_known_junctions	FALSE	canonical	3	234	junction_3	16.0485374896143	121	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATATTCATGTTTCTT	NA	False	NA	NA	False	AAGAAA	-19	NA	29683379	29688924	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_29683654_29684684_29684752_29687006_29687232_29688473
ENSMUSG00000074221.13_29683563_29688924_1	chr7	+	834	4	NIC	ENSMUSG00000074221.13	novel	4005	10	NA	NA	183	247	combination_of_known_junctions	FALSE	canonical	3	234	junction_3	16.0485374896143	46	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATATTCATGTTTCTT	NA	False	NA	NA	False	AAGAAA	-19	NA	29683562	29688924	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_29683654_29684684_29684752_29687006_29687232_29688473
ENSMUSG00000074227.13_28955766_28981073_1	chr7	-	864	6	NNC	ENSMUSG00000074227.13	novel	1211	6	NA	NA	262	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	491.498931840141	198	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTATGTAGTTTGGTTT	731	False	NA	-16	True	AATAAA	-21	NA	28981073	28955765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_28956178_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28980936
ENSMUSG00000074227.13_28955766_28981073_3	chr7	-	1022	7	FSM	ENSMUSG00000074227.13	ENSMUST00000207601.2	1304	7	264	18	262	0	multi-exon	FALSE	canonical	0	0	junction_2	472.77185007382	1926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTATGTAGTTTGGTTT	731	False	NA	-16	True	AATAAA	-21	NA	28981073	28955765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959481_28959555_28959795_28959856_28980936
ENSMUSG00000074227.13_28955766_28981073_4	chr7	-	949	6	FSM	ENSMUSG00000074227.13	ENSMUST00000108236.5	1211	6	262	0	262	0	multi-exon	FALSE	canonical	0	0	junction_2	398.697679953119	2651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTATGTAGTTTGGTTT	731	False	NA	-16	True	AATAAA	-21	NA	28981073	28955765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28980936
ENSMUSG00000074227.13_28955766_28981073_5	chr7	-	933	5	NNC	ENSMUSG00000074227.13	novel	1211	6	NA	NA	262	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	445.694612374886	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTATGTAGTTTGGTTT	731	False	NA	-16	True	AATAAA	-21	NA	28981073	28955765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_28956282_28957847_28958014_28958823_28958878_28959795_28959856_28980936
ENSMUSG00000074227.13_28955766_28981073_6	chr7	-	1120	7	FSM	ENSMUSG00000074227.13	ENSMUST00000098604.12	1384	7	264	0	262	0	multi-exon	FALSE	canonical	0	0	junction_2	452.801066204084	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTATGTAGTTTGGTTT	731	False	NA	-16	True	AATAAA	-21	NA	28981073	28955765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28963019_28963191_28980936
ENSMUSG00000074240.6_72958179_72961282_1	chr8	-	490	4	NNC	ENSMUSG00000074240.6	novel	585	5	NA	NA	5381	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6.37704215656966	86	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGATCTCTGCCTTTTGC	NA	False	NA	NA	False	AATAAA	-18	NA	72961282	72958178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_72958275_72959406_72959603_72960970_72961119_72961232
ENSMUSG00000074247.11_71921843_71927736_1	chr8	+	920	5	NNC	ENSMUSG00000074247.11	novel	1933	5	NA	NA	0	118	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	353.760512211298	958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGGCGTCTTTGCTCCGCA	NA	False	NA	18	True	AATAAA	-19	NA	71921842	71927736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71921970_71924680_71924762_71924838_71924891_71926418_71926486_71927143
ENSMUSG00000074247.11_71921843_71927736_2	chr8	+	927	5	FSM	ENSMUSG00000074247.11	ENSMUST00000124745.8	1933	5	0	1006	0	118	multi-exon	FALSE	canonical	2	515	junction_4	131.476946648452	1707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGGCGTCTTTGCTCCGCA	NA	False	NA	18	True	AATAAA	-19	NA	71921842	71927736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71921970_71924680_71924762_71924838_71924891_71926418_71926481_71927131
ENSMUSG00000074247.11_71921843_71927736_3	chr8	+	915	5	NNC	ENSMUSG00000074247.11	novel	1933	5	NA	NA	0	118	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	353.760512211298	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGGCGTCTTTGCTCCGCA	NA	False	NA	18	True	AATAAA	-19	NA	71921842	71927736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71921970_71924680_71924762_71924838_71924891_71926418_71926486_71927148
ENSMUSG00000074247.11_71921843_71927736_4	chr8	+	1009	4	NNC	ENSMUSG00000074247.11	novel	1933	5	NA	NA	0	118	intron_retention	FALSE	canonical	0	0	junction_3	388.999000284348	499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGGCGTCTTTGCTCCGCA	NA	False	NA	18	True	AATAAA	-19	NA	71921842	71927736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71921970_71924680_71924891_71926418_71926486_71927131
ENSMUSG00000074247.11_71921843_71927736_5	chr8	+	880	4	NNC	ENSMUSG00000074247.11	novel	1881	4	NA	NA	0	118	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	372.388984202749	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGGCGTCTTTGCTCCGCA	NA	False	NA	18	True	AATAAA	-19	NA	71921842	71927736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_71921970_71924680_71924762_71926418_71926486_71927131
ENSMUSG00000074247.11_71921843_71927736_6	chr8	+	865	4	FSM	ENSMUSG00000074247.11	ENSMUST00000147642.2	1865	4	-6	1006	0	118	multi-exon	FALSE	canonical	1	1	junction_3	377.602966090045	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGGCGTCTTTGCTCCGCA	NA	False	NA	18	True	AATAAA	-19	NA	71921842	71927736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71921970_71924680_71924762_71924838_71924891_71927131
ENSMUSG00000074269.11_58560164_58648842_1	chr9	-	856	6	NNC	ENSMUSG00000074269.11	novel	883	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	244.73054570282	3688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTTTTATCAATGTTTT	9050	False	NA	-8	True	AATAAA	-15	NA	58648842	58560163	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_58560390_58565039_58565127_58567456_58567649_58573111_58573200_58619298_58619389_58648669
ENSMUSG00000074269.11_58560164_58648842_2	chr9	-	823	6	NNC	ENSMUSG00000074269.11	novel	883	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	297.891658157794	891	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTTTTATCAATGTTTT	9050	False	NA	-8	True	AATAAA	-15	NA	58648842	58560163	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_58560390_58565039_58565127_58567491_58567655_58573115_58573200_58619298_58619389_58648669
ENSMUSG00000074269.11_58560164_58648842_3	chr9	-	894	6	NNC	ENSMUSG00000074269.11	novel	883	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	290.280829542703	3184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTTTTATCAATGTTTT	9050	False	NA	-8	True	AATAAA	-15	NA	58648842	58560163	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_58560426_58565039_58565127_58567456_58567655_58573115_58573200_58619298_58619389_58648669
ENSMUSG00000074274.8_24854935_24856052_1	chr7	+	645	2	ISM	ENSMUSG00000074274.8	ENSMUST00000186424.2	493	3	441	-408	441	0	3prime_fragment	FALSE	canonical	2	4	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTGTGTGTGTTTGCTT	1023	False	NA	NA	False	AATAAA	-16	NA	24854934	24856052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_24855046_24855518
ENSMUSG00000074284.7_56964184_56979252_1	chr9	-	1132	3	FSM	ENSMUSG00000074284.7	ENSMUST00000128125.2	1241	3	-161	270	-2	-270	multi-exon	FALSE	canonical	1	2	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTATCTCCACTGTGTCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	56979252	56964183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_56964423_56964552_56965086_56978892
ENSMUSG00000074358.10_18624809_18644323_1	chr7	-	1992	14	NIC	ENSMUSG00000074358.10	novel	1961	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_7	38.5657050949086	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCTAGTGTGTGATTCA	2777	False	NA	-2	True	AATAAA	-17	NA	18644323	18624808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627703_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
ENSMUSG00000074398.6_96463081_96465131_1	chr3	-	826	2	ISM	ENSMUSG00000074398.6	ENSMUST00000098839.3	659	3	0	0	0	0	intron_retention	FALSE	canonical	2	2	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTCTTGTTTTTAAACC	NA	False	NA	NA	False	AATAAA	-16	NA	96465131	96463080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_96463377_96464601
ENSMUSG00000074476.7_21666738_21671578_1	chr9	-	1350	5	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	944.135186294844	17382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGTGTGTGTGCAG	NA	False	NA	NA	False	NA	NA	NA	21671578	21666737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_21667592_21668412_21668490_21668585_21668696_21668980_21669126_21671414
ENSMUSG00000074476.7_21666933_21671578_1	chr9	-	1155	5	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	0	-195	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	944.135186294844	16528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAACAAACAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	21671578	21666932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_21667592_21668412_21668490_21668585_21668696_21668980_21669126_21671414
ENSMUSG00000074476.7_21667400_21671578_2	chr9	-	670	4	NNC	ENSMUSG00000074476.7	novel	627	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	903.617298540827	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCGTTCATTGATTTAT	NA	False	NA	-22	True	ATTAAA	-12	NA	21671578	21667399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_21667592_21668526_21668696_21668980_21669126_21671414
ENSMUSG00000074476.7_21667400_21671578_3	chr9	-	555	5	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1095.95221154939	863	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCGTTCATTGATTTAT	NA	False	NA	-22	True	ATTAAA	-12	NA	21671578	21667399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_21667592_21668412_21668490_21668585_21668696_21668980_21669126_21671547
ENSMUSG00000074476.7_21667400_21671578_4	chr9	-	688	5	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	944.135186294844	8204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCGTTCATTGATTTAT	NA	False	NA	-22	True	ATTAAA	-12	NA	21671578	21667399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_21667592_21668412_21668490_21668585_21668696_21668980_21669126_21671414
ENSMUSG00000074476.7_21667400_21671578_6	chr9	-	611	4	NNC	ENSMUSG00000074476.7	novel	627	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	897.760547139381	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCGTTCATTGATTTAT	NA	False	NA	-22	True	ATTAAA	-12	NA	21671578	21667399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_21667592_21668585_21668696_21668980_21669126_21671414
ENSMUSG00000074476.7_21667400_21671578_7	chr9	-	679	5	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	944.135186294844	2751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCGTTCATTGATTTAT	NA	False	NA	-22	True	ATTAAA	-12	NA	21671578	21667399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_21667592_21668412_21668490_21668585_21668696_21668989_21669126_21671414
ENSMUSG00000074479.4_88483246_88495726_1	chr3	-	1371	9	Genic_Genomic	ENSMUSG00000074479.4	novel	730	1	NA	NA	-11280	471	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9149	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTCTTTGGCCTCAGACC	7880	False	NA	NA	False	NA	NA	NA	88495726	88483245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_88483288_88483545_88483689_88483806_88483911_88484401_88484504_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ENSMUSG00000074479.4_88483246_88495726_2	chr3	-	1369	9	Genic_Genomic	ENSMUSG00000074479.4	novel	730	1	NA	NA	-11280	471	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3755	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTCTTTGGCCTCAGACC	7880	False	NA	NA	False	NA	NA	NA	88495726	88483245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_88483288_88483545_88483689_88483806_88483911_88484401_88484504_88487186_88487342_88488282_88488380_88491083_88491193_88494171_88494250_88495187
ENSMUSG00000074479.4_88483246_88495726_3	chr3	-	1126	7	Genic_Genomic	ENSMUSG00000074479.4	novel	730	1	NA	NA	-11280	471	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3354	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTCTTTGGCCTCAGACC	7880	False	NA	NA	False	NA	NA	NA	88495726	88483245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_88483288_88483806_88483911_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ENSMUSG00000074479.4_88483246_88495726_5	chr3	-	1269	8	Genic_Genomic	ENSMUSG00000074479.4	novel	730	1	NA	NA	-11280	471	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3644	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTCTTTGGCCTCAGACC	7880	False	NA	NA	False	NA	NA	NA	88495726	88483245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_88483288_88483545_88483689_88483806_88483911_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ENSMUSG00000074489.10_88275929_88280050_2	chr3	-	699	5	NIC	ENSMUSG00000074489.10	novel	2051	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_3	35.14612354158	376	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTGGAGTCTG	7128	False	NA	NA	False	AATAAA	-13	NA	88280050	88275928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88279845
ENSMUSG00000074489.10_88275929_88280050_3	chr3	-	686	5	NNC	ENSMUSG00000074489.10	novel	2051	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_4	6.26498204307083	354	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTGGAGTCTG	7128	False	NA	NA	False	AATAAA	-13	NA	88280050	88275928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88279858
ENSMUSG00000074491.10_3766064_3768653_1	chr8	-	1047	6	ISM	ENSMUSG00000074491.10	ENSMUST00000062037.7	1242	9	1998	0	0	0	3prime_fragment	FALSE	canonical	2	2	junction_2	1.49666295470958	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCTGTATTGGAAAAGAAT	NA	False	NA	NA	False	AATAAA	-27	NA	3768653	3766063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_-_3766557_3767193_3767310_3767416_3767566_3767737_3767828_3768341_3768447_3768559
ENSMUSG00000074513.10_84403400_84489995_1	chr3	-	2953	8	FSM	ENSMUSG00000074513.10	ENSMUST00000098990.10	2799	8	-154	0	-63	0	multi-exon	FALSE	canonical	3	164	junction_6	7.88954358370519	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGCCCTGTCCTTAT	NA	False	NA	-3	True	ATTAAA	-16	NA	84489995	84403399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84441893_84442003_84455240_84455343_84489720
ENSMUSG00000074519.12_177665077_177693732_1	chr2	+	486	4	NNC	ENSMUSG00000074519.12	novel	1413	4	NA	NA	0	17917	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	14.7648230602334	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCCAATGCTCATTTTAT	NA	False	NA	NA	False	NA	NA	NA	177665076	177693732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_177665175_177673047_177673175_177673382_177673444_177693532
ENSMUSG00000074521.10_177401078_177547323_1	chr2	+	1185	4	Fusion	ENSMUSG00000074521.10_ENSMUSG00000078864.11	novel	192	2	NA	NA	-3	-254	multi-exon	FALSE	canonical	3	23	junction_2	151.098937418133	441	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTGTGCAAAGACTTTGA	NA	False	NA	NA	False	NA	NA	NA	177401077	177547323	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_+_177401169_177404638_177404694_177546077_177546205_177546411
ENSMUSG00000074521.10_177538889_177546564_1	chr2	+	438	3	FSM	ENSMUSG00000074521.10	ENSMUST00000108935.8	1451	3	0	1013	0	88	multi-exon	FALSE	canonical	3	28	junction_2	14.5	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGCTTTCAGTTATGGA	NA	False	NA	NA	False	NA	NA	NA	177538888	177546564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_177539047_177546077_177546205_177546411
ENSMUSG00000074521.10_177538889_177546623_1	chr2	+	497	3	FSM	ENSMUSG00000074521.10	ENSMUST00000108935.8	1451	3	0	954	0	147	multi-exon	FALSE	canonical	3	28	junction_2	14.5	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGTAATTATTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	177538888	177546623	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_177539047_177546077_177546205_177546411
ENSMUSG00000074521.10_177538889_177547420_1	chr2	+	1294	3	FSM	ENSMUSG00000074521.10	ENSMUST00000108935.8	1451	3	0	157	0	-157	multi-exon	FALSE	canonical	3	28	junction_2	14.5	1401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTTCTCATTTCATGTA	NA	False	NA	NA	False	NA	NA	NA	177538888	177547420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_177539047_177546077_177546205_177546411
ENSMUSG00000074527.12_176609193_176619587_2	chr2	-	430	5	NNC	ENSMUSG00000074527.12	novel	3823	5	NA	NA	0	142	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_4	34.8093019177346	45	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	176619587	176609192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_176609305_176610459_176610521_176610725_176610853_176615991_176616047_176619512
ENSMUSG00000074527.12_176610314_176619587_1	chr2	-	492	4	ISM	ENSMUSG00000074527.12	ENSMUST00000099007.3	3823	5	15	4471	0	-979	5prime_fragment	FALSE	canonical	3	18	junction_2	8.37987005998436	210	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTATGTATGTAATTATTG	NA	False	NA	NA	False	NA	NA	NA	176619587	176610313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_176610521_176610725_176610853_176615991_176616047_176619484
ENSMUSG00000074527.12_176610314_176619587_2	chr2	-	464	4	NNC	ENSMUSG00000074527.12	novel	5159	6	NA	NA	0	-979	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	13.5728487143349	183	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTATGTATGTAATTATTG	NA	False	NA	NA	False	NA	NA	NA	176619587	176610313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_176610521_176610725_176610853_176615991_176616047_176619512
ENSMUSG00000074527.12_176610314_176757253_1	chr2	-	540	3	NNC	ENSMUSG00000074527.12	novel	1313	2	NA	NA	-137651	-979	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	10	654	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTATGTATGTAATTATTG	NA	False	NA	NA	False	NA	NA	NA	176757253	176610313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_176610521_176610725_176610853_176757047
ENSMUSG00000074529.11_177544854_177567443_1	chr2	-	820	3	NIC	ENSMUSG00000074529.11	novel	561	3	NA	NA	-37	279	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	4	331	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCTAAACTGTTATAAATC	NA	False	NA	NA	False	AATAAA	-45	NA	177567443	177544853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_177545521_177563227_177563289_177567351
ENSMUSG00000074529.11_177544854_177567443_2	chr2	-	947	4	NIC	ENSMUSG00000074529.11	novel	561	3	NA	NA	-37	279	combination_of_known_splicesites	FALSE	canonical	3	8	junction_2	2.49443825784929	421	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCTAAACTGTTATAAATC	NA	False	NA	NA	False	AATAAA	-45	NA	177567443	177544853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_177545521_177563227_177563289_177563481_177563609_177567351
ENSMUSG00000074578.15_166905143_166907782_1	chr2	+	665	4	FSM	ENSMUSG00000074578.15	ENSMUST00000125841.3	525	4	0	-140	0	0	multi-exon	FALSE	canonical	3	874	junction_1	54.7783412186483	3204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905142	166907782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_166905218_166905555_166905648_166907078_166907401_166907606
ENSMUSG00000074578.15_166905143_166907782_10	chr2	+	442	5	NNC	ENSMUSG00000074578.15	novel	738	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	409.357041590834	35583	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905142	166907782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_166905218_166905555_166905648_166907078_166907138_166907360_166907401_166907606
ENSMUSG00000074578.15_166905143_166907782_11	chr2	+	430	4	NNC	ENSMUSG00000074578.15	novel	659	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	446.952147575355	3813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905142	166907782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_166905218_166905555_166905648_166907078_166907138_166907578
ENSMUSG00000074578.15_166905143_166907782_12	chr2	+	449	5	NNC	ENSMUSG00000074578.15	novel	738	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	409.357041590834	45129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905142	166907782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_166905218_166905555_166905648_166907078_166907145_166907360_166907401_166907606
ENSMUSG00000074578.15_166905143_166907782_2	chr2	+	1209	2	FSM	ENSMUSG00000074578.15	ENSMUST00000136378.2	731	2	2	-480	0	0	multi-exon	FALSE	canonical	3	1008	junction_1	0	3236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905142	166907782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_166905648_166907078
ENSMUSG00000074578.15_166905143_166907782_3	chr2	+	443	5	NNC	ENSMUSG00000074578.15	novel	738	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	416.213286669227	47230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905142	166907782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_166905227_166905570_166905648_166907078_166907138_166907353_166907401_166907606
ENSMUSG00000074578.15_166905143_166907782_4	chr2	+	871	3	ISM	ENSMUSG00000074578.15	ENSMUST00000238277.2	572	5	2	0	0	0	intron_retention	FALSE	canonical	3	874	junction_1	67	3818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905142	166907782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_166905218_166905555_166905648_166907078
ENSMUSG00000074578.15_166905143_166907782_5	chr2	+	357	4	NIC	ENSMUSG00000074578.15	novel	738	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	440.292579491814	3395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905142	166907782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_166905218_166907078_166907138_166907353_166907401_166907606
ENSMUSG00000074578.15_166905143_166907782_6	chr2	+	439	4	NNC	ENSMUSG00000074578.15	novel	659	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	446.952147575355	6714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905142	166907782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_166905218_166905555_166905648_166907078_166907138_166907569
ENSMUSG00000074578.15_166905143_166907782_7	chr2	+	432	5	NNC	ENSMUSG00000074578.15	novel	738	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_4	404.345458735473	15680	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905142	166907782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_166905218_166905555_166905648_166907078_166907138_166907353_166907401_166907623
ENSMUSG00000074578.15_166905143_166907782_8	chr2	+	417	4	NNC	ENSMUSG00000074578.15	novel	525	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	446.952147575355	2572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905142	166907782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_166905218_166905555_166905648_166907078_166907153_166907606
ENSMUSG00000074578.15_166905143_166907782_9	chr2	+	437	5	NNC	ENSMUSG00000074578.15	novel	659	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	409.076016774389	23201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905142	166907782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_166905218_166905555_166905648_166907078_166907138_166907353_166907406_166907623
ENSMUSG00000074578.15_166905555_166907782_1	chr2	+	372	4	NNC	ENSMUSG00000074578.15	novel	738	5	NA	NA	402	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	458.938146401258	3789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905554	166907782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_166905648_166907078_166907142_166907360_166907401_166907606
ENSMUSG00000074582.11_166733563_166737098_1	chr2	+	948	3	ISM	ENSMUSG00000074582.11	ENSMUST00000099078.10	8770	39	86055	2874	63986	-2874	3prime_fragment	FALSE	canonical	3	208	junction_2	13.5	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAAGTGCGCGGTGTTTTG	NA	False	NA	13	True	AATAAA	-25	NA	166733562	166737098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_166733826_166735420_166735539_166736531
ENSMUSG00000074593.12_164558459_164559992_1	chr2	+	355	3	NNC	ENSMUSG00000074593.12	novel	443	4	NA	NA	1234	4	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	2	158	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAGAATTCAAAATTCTTG	718	False	NA	NA	False	AATAAA	-20	NA	164558458	164559992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164558546_164558914_164559085_164559894
ENSMUSG00000074604.10_51579336_51590098_1	chr3	+	509	4	FSM	ENSMUSG00000074604.10	ENSMUST00000162125.8	351	4	0	-158	0	0	multi-exon	FALSE	canonical	1	3	junction_1	6.18241233033047	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGTGGCTTTGTGGTA	NA	False	NA	NA	False	AATAAA	-17	NA	51579335	51590098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_51579468_51584985_51585057_51589217_51589300_51589874
ENSMUSG00000074637.8_34705581_34706269_4	chr3	+	655	2	Genic_Genomic	ENSMUSG00000074637.8	novel	2057	1	NA	NA	1027	-341	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2028	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCATGCAGGTTGATATC	5634	False	NA	-59	True	ACTAAA	-33	NA	34705580	34706269	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_+_34705631_34705664
ENSMUSG00000074637.8_34705581_34706610_4	chr3	+	996	2	Genic_Genomic	ENSMUSG00000074637.8	novel	2057	1	NA	NA	1027	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGCCTGAGTCTTTCATT	5634	False	NA	19	True	AATAAA	-24	NA	34705580	34706610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_+_34705631_34705664
ENSMUSG00000074653.11_30733058_30754014_1	chr3	-	1794	9	NNC	ENSMUSG00000074653.11	novel	1586	9	NA	NA	-22	149	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	17.8985858379929	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGGCTCATGATACCTTT	NA	False	NA	-5	True	NA	NA	NA	30754014	30733057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745474_30749635_30749780_30753847
ENSMUSG00000074656.13_154713338_154734751_1	chr2	-	2366	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4169.46393510879	49656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTAGTGCTCCATTGCTTT	3736	False	NA	-16	True	AATAAA	-24	NA	154734751	154713337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_154714096_154714159_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
ENSMUSG00000074656.13_154714274_154734855_1	chr2	-	1598	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	0	944	0	-936	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	50561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGATTCCTGGGCTGTGGC	3632	False	NA	58	True	AATAAA	-37	NA	154734855	154714273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
ENSMUSG00000074656.13_154714355_154734751_1	chr2	-	1413	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	104	1025	0	-1017	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	44514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGAAGTCGATCTGTC	3736	False	NA	-23	True	ATTAAA	-17	NA	154734751	154714354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
ENSMUSG00000074731.4_150313305_150327011_1	chr2	-	2340	4	FSM	ENSMUSG00000074731.4	ENSMUST00000109914.2	2734	4	0	394	0	-394	multi-exon	FALSE	canonical	3	25	junction_1	6.12825877028341	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTAGGGGCAGTCATGGT	NA	False	NA	NA	False	AATAAA	-20	NA	150327011	150313304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_150315345_150316415_150316477_150316675_150316803_150326899
ENSMUSG00000074731.4_150314912_150327011_1	chr2	-	733	4	FSM	ENSMUSG00000074731.4	ENSMUST00000109914.2	2734	4	0	2001	0	-2001	multi-exon	FALSE	canonical	3	25	junction_1	6.12825877028341	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCTGGAGAGACACCCTT	NA	False	NA	NA	False	NA	NA	NA	150327011	150314911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_150315345_150316415_150316477_150316675_150316803_150326899
ENSMUSG00000074731.4_150315649_150327011_1	chr2	-	1067	3	ISM	ENSMUSG00000074731.4	ENSMUST00000109914.2	2734	4	0	2738	0	-2738	5prime_fragment	FALSE	canonical	3	32	junction_2	4	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTGTTCAGTGTGGTA	NA	False	NA	NA	False	NA	NA	NA	150327011	150315648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_150316477_150316675_150316803_150326899
ENSMUSG00000074733.15_61108611_61129257_1	chr19	-	583	4	FSM	ENSMUSG00000074733.15	ENSMUST00000180544.3	2568	4	-57	2042	0	-753	multi-exon	FALSE	canonical	3	24	junction_1	12.675435561221	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTATGAGTGTAATCAATG	NA	False	NA	NA	False	NA	NA	NA	61129257	61108610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_61108891_61115444_61115506_61115875_61116003_61129142
ENSMUSG00000074733.15_61115270_61129257_1	chr19	-	478	3	FSM	ENSMUSG00000074733.15	ENSMUST00000143264.8	4825	3	-29	4376	0	171	multi-exon	FALSE	canonical	3	41	junction_2	7	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTTTGAGAATTACTG	NA	False	NA	NA	False	NA	NA	NA	61129257	61115269	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_61115506_61115875_61116003_61129142
ENSMUSG00000074754.5_144435974_144437286_1	chr2	+	491	2	NNC	ENSMUSG00000074754.5	novel	471	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	4758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCAGTGTCTTCTTGAAG	NA	False	NA	NA	False	NA	NA	NA	144435973	144437286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_144436126_144436947
ENSMUSG00000074768.7_93753404_93774100_1	chr13	-	1900	8	FSM	ENSMUSG00000074768.7	ENSMUST00000099309.6	2490	8	369	221	-26	-221	multi-exon	FALSE	canonical	1	3	junction_5	5.15474815790535	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAATTTTTTGTGGTCCAT	NA	False	NA	NA	False	AATAAA	-25	NA	93774100	93753403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_93754171_93756589_93756819_93757901_93758085_93761321_93761470_93761804_93761997_93763754_93763874_93769743_93769877_93773971
ENSMUSG00000074781.6_95351007_95378296_1	chr10	+	644	4	FSM	ENSMUSG00000074781.6	ENSMUST00000099329.5	3867	4	0	3223	0	99	multi-exon	FALSE	canonical	3	1883	junction_3	164.877732476726	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGGTGATTACATGCAC	NA	False	NA	NA	False	AATAAA	-17	NA	95351006	95378296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_95351100_95377066_95377314_95377499_95377641_95378133
ENSMUSG00000074781.6_95351007_95378869_1	chr10	+	1217	4	FSM	ENSMUSG00000074781.6	ENSMUST00000099329.5	3867	4	0	2650	0	1	multi-exon	FALSE	canonical	3	1883	junction_3	164.877732476726	7641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCCTTTGTACAGTTTA	NA	False	NA	NA	False	AGTAAA	-19	NA	95351006	95378869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_95351100_95377066_95377314_95377499_95377641_95378133
ENSMUSG00000074781.6_95351007_95378869_2	chr10	+	1208	4	NNC	ENSMUSG00000074781.6	novel	3867	4	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	900.898193779717	7103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCCTTTGTACAGTTTA	NA	False	NA	NA	False	AGTAAA	-19	NA	95351006	95378869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_95351100_95377075_95377314_95377499_95377641_95378133
ENSMUSG00000074781.6_95351007_95379147_1	chr10	+	1495	4	FSM	ENSMUSG00000074781.6	ENSMUST00000099329.5	3867	4	0	2372	0	279	multi-exon	FALSE	canonical	3	1883	junction_3	164.877732476726	7925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTGATCCTTGGTGTCC	NA	False	NA	5	True	AATAAA	-16	NA	95351006	95379147	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_95351100_95377066_95377314_95377499_95377641_95378133
ENSMUSG00000074797.12_130509746_130523534_1	chr2	+	1166	8	NNC	ENSMUSG00000074797.12	novel	1390	8	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	6	junction_7	156.866380159962	3557	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGTCTGTCTTGAGTTT	5451	False	NA	18	True	AATAAA	-18	NA	130509745	130523534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_130509856_130513320_130513379_130513475_130513541_130513979_130514054_130516158_130516191_130517548_130517665_130521254_130521332_130522900
ENSMUSG00000074797.12_130509746_130523534_2	chr2	+	1176	7	NNC	ENSMUSG00000074797.12	novel	1390	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	191.914622220982	3767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGTCTGTCTTGAGTTT	5451	False	NA	18	True	AATAAA	-18	NA	130509745	130523534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_130509856_130513320_130513379_130513475_130513541_130513979_130514054_130517514_130517665_130521254_130521332_130522892
ENSMUSG00000074797.12_130509746_130523534_3	chr2	+	1161	7	NNC	ENSMUSG00000074797.12	novel	1390	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	191.914622220982	1111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGTCTGTCTTGAGTTT	5451	False	NA	18	True	AATAAA	-18	NA	130509745	130523534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_130509856_130513320_130513379_130513475_130513541_130513979_130514054_130517529_130517665_130521254_130521332_130522892
ENSMUSG00000074797.12_130509746_130523534_4	chr2	+	1174	8	FSM	ENSMUSG00000074797.12	ENSMUST00000103193.5	1390	8	216	0	0	0	multi-exon	FALSE	canonical	3	338	junction_5	87.1842992792643	4275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGTCTGTCTTGAGTTT	5451	False	NA	18	True	AATAAA	-18	NA	130509745	130523534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_130509856_130513320_130513379_130513475_130513541_130513979_130514054_130516158_130516191_130517548_130517665_130521254_130521332_130522892
ENSMUSG00000074813.15_128214027_128271313_2	chr2	-	485	3	FSM	ENSMUSG00000074813.15	ENSMUST00000239374.2	682	3	196	1	0	0	multi-exon	FALSE	canonical	3	6	junction_2	3.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCAATTGTCTGTTTCTTA	NA	False	NA	NA	False	ATTAAA	-17	NA	128271313	128214026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_128214348_128271013_128271092_128271227
ENSMUSG00000074813.15_128255371_128271313_1	chr2	-	459	3	NNC	ENSMUSG00000074813.15	novel	1413	7	NA	NA	0	-41336	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	61	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTGTTGTTGTTGTT	NA	False	NA	NA	False	TTTAAA	-21	NA	128271313	128255370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_128255671_128271013_128271092_128271232
ENSMUSG00000074826.11_67048681_67053442_1	chr13	+	529	4	NNC	ENSMUSG00000074826.11	novel	2067	3	NA	NA	-4297	-3788	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	20323	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCCTGGATACTTTAGGAA	NA	False	NA	NA	False	NA	NA	NA	67048680	67053442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_67048891_67049465_67049633_67050793_67050860_67053356
ENSMUSG00000074826.11_67048681_67053442_2	chr13	+	526	4	NNC	ENSMUSG00000074826.11	novel	2067	3	NA	NA	-4297	-3788	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	13375	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCCTGGATACTTTAGGAA	NA	False	NA	NA	False	NA	NA	NA	67048680	67053442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_67048882_67049465_67049633_67050793_67050866_67053356
ENSMUSG00000074826.11_67048681_67053442_3	chr13	+	516	4	NNC	ENSMUSG00000074826.11	novel	2067	3	NA	NA	-4297	-3788	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2051	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCCTGGATACTTTAGGAA	NA	False	NA	NA	False	NA	NA	NA	67048680	67053442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_67048891_67049484_67049633_67050793_67050866_67053356
ENSMUSG00000074826.11_67048681_67053442_4	chr13	+	544	4	NNC	ENSMUSG00000074826.11	novel	2067	3	NA	NA	-4297	-3788	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	48257	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCCTGGATACTTTAGGAA	NA	False	NA	NA	False	NA	NA	NA	67048680	67053442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_67048891_67049456_67049633_67050793_67050866_67053356
ENSMUSG00000074826.11_67048681_67053442_5	chr13	+	522	4	NNC	ENSMUSG00000074826.11	novel	2067	3	NA	NA	-4297	-3788	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7315	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCCTGGATACTTTAGGAA	NA	False	NA	NA	False	NA	NA	NA	67048680	67053442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_67048891_67049465_67049633_67050793_67050853_67053356
ENSMUSG00000074826.11_67048681_67053442_6	chr13	+	523	4	NNC	ENSMUSG00000074826.11	novel	2067	3	NA	NA	-4297	-3788	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6147	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCCTGGATACTTTAGGAA	NA	False	NA	NA	False	NA	NA	NA	67048680	67053442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_67048891_67049465_67049621_67050793_67050866_67053356
ENSMUSG00000074826.11_67048681_67106907_1	chr13	+	529	5	NNC	ENSMUSG00000074826.11	novel	2067	3	NA	NA	-4297	49607	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	81266	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACGCGCGCTCGAGCCAG	NA	False	NA	NA	False	AATATA	-17	NA	67048680	67106907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_67048891_67049465_67049633_67050793_67050866_67053356_67053400_67106870
ENSMUSG00000074826.11_67048681_67106907_2	chr13	+	517	5	NNC	ENSMUSG00000074826.11	novel	2067	3	NA	NA	-4297	49607	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	81231	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACGCGCGCTCGAGCCAG	NA	False	NA	NA	False	AATATA	-17	NA	67048680	67106907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_67048891_67049465_67049633_67050793_67050866_67053356_67053403_67106885
ENSMUSG00000074830.5_66638558_66828877_1	chr13	-	556	4	NNC	ENSMUSG00000074830.5	novel	1562	3	NA	NA	-7484	179434	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	97.2830920561225	518	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTCATCATCTATAGCAG	NA	False	NA	NA	False	NA	NA	NA	66828877	66638557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66638818_66821007_66821069_66821267_66821395_66828769
ENSMUSG00000074830.5_66791247_66846331_1	chr13	-	554	5	NNC	ENSMUSG00000074830.5	novel	1562	3	NA	NA	-24	26745	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	85.1920624236789	1303	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTAGTGTATATTGTTT	NA	False	NA	NA	False	NA	NA	NA	66846331	66791246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66791360_66791808_66791952_66821007_66821069_66821267_66821395_66846221
ENSMUSG00000074830.5_66816683_66828877_1	chr13	-	465	4	NNC	ENSMUSG00000074830.5	novel	1562	3	NA	NA	-7484	1309	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	85.7956227839678	819	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	1	True	NA	NA	NA	66828877	66816682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66816852_66821007_66821069_66821267_66821395_66828769
ENSMUSG00000074830.5_66816683_66846331_1	chr13	-	467	4	NNC	ENSMUSG00000074830.5	novel	1562	3	NA	NA	-24	1309	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	88.9244373361764	781	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	1	True	NA	NA	NA	66846331	66816682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66816852_66821007_66821069_66821267_66821395_66846221
ENSMUSG00000074832.12_66417224_66589186_1	chr13	-	548	5	Fusion	ENSMUSG00000074832.12_ENSMUSG00000094499.4	novel	515	5	NA	NA	-7	81754	multi-exon	FALSE	canonical	1	3	junction_1	76.5947126112501	1924	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCAGTGTCTATTGTTC	NA	False	NA	NA	False	NA	NA	NA	66589186	66417223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr13_-_66417335_66519399_66519543_66581478_66581540_66581739_66581867_66589080
ENSMUSG00000074832.12_66476118_66589186_1	chr13	-	551	5	Fusion	ENSMUSG00000074832.12_ENSMUSG00000094499.4	novel	515	5	NA	NA	-7	22860	multi-exon	FALSE	canonical	1	1	junction_1	77.2075125878305	1937	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTAGTGTATATTGTTT	NA	False	NA	NA	False	NA	NA	NA	66589186	66476117	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr13_-_66476232_66519399_66519543_66581478_66581540_66581739_66581867_66589080
ENSMUSG00000074832.12_66518841_66589186_1	chr13	-	543	5	Fusion	ENSMUSG00000074832.12_ENSMUSG00000094499.4	novel	515	5	NA	NA	-7	-19628	multi-exon	FALSE	canonical	0	0	junction_1	77.515724211285	1827	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCAGTGTCTATTGTTC	NA	False	NA	NA	False	NA	NA	NA	66589186	66518840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr13_-_66518940_66519392_66519543_66581478_66581540_66581739_66581867_66589080
ENSMUSG00000074832.12_66574390_66589186_1	chr13	-	532	4	NNC	ENSMUSG00000074832.12	novel	515	5	NA	NA	-7	3561	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	81.8508127971589	307	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCCTTGGTCATGAAATG	NA	False	NA	1	True	NA	NA	NA	66589186	66574389	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66574628_66581478_66581540_66581739_66581867_66589080
ENSMUSG00000074832.12_66574390_66589186_2	chr13	-	459	4	NNC	ENSMUSG00000074832.12	novel	515	5	NA	NA	-7	3561	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	82.3097132110718	240	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCCTTGGTCATGAAATG	NA	False	NA	1	True	NA	NA	NA	66589186	66574389	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66574555_66581478_66581540_66581739_66581867_66589080
ENSMUSG00000074832.12_66577502_66589186_1	chr13	-	519	4	NNC	ENSMUSG00000074832.12	novel	515	5	NA	NA	-7	449	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	82.3097132110718	126	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGTTAATTTGAATATGC	NA	False	NA	NA	False	NA	NA	NA	66589186	66577501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66577727_66581478_66581540_66581739_66581867_66589080
ENSMUSG00000074832.12_66577779_66589186_1	chr13	-	586	4	NNC	ENSMUSG00000074832.12	novel	2587	4	NA	NA	-7	172	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	71.3411210702184	732	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	0	True	NA	NA	NA	66589186	66577778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66578071_66581478_66581540_66581739_66581867_66589080
ENSMUSG00000074832.12_66577779_66589186_2	chr13	-	2806	4	FSM	ENSMUSG00000074832.12	ENSMUST00000172579.4	2587	4	-47	-172	-7	172	multi-exon	FALSE	canonical	3	86	junction_1	43.8254111979188	689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	0	True	NA	NA	NA	66589186	66577778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_66580291_66581478_66581540_66581739_66581867_66589080
ENSMUSG00000074832.12_66577779_66589186_3	chr13	-	498	4	NNC	ENSMUSG00000074832.12	novel	2587	4	NA	NA	-7	172	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	82.3097132110718	242	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	0	True	NA	NA	NA	66589186	66577778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66577983_66581478_66581540_66581739_66581867_66589080
ENSMUSG00000074832.12_66580054_66589186_1	chr13	-	531	4	FSM	ENSMUSG00000074832.12	ENSMUST00000172579.4	2587	4	-47	2103	-7	-2103	multi-exon	FALSE	canonical	3	86	junction_1	43.8254111979188	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGGTCTCAGATATCATA	NA	False	NA	NA	False	NA	NA	NA	66589186	66580053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_66580291_66581478_66581540_66581739_66581867_66589080
ENSMUSG00000074832.12_66580179_66589186_1	chr13	-	406	4	FSM	ENSMUSG00000074832.12	ENSMUST00000172579.4	2587	4	-47	2228	-7	-2228	multi-exon	FALSE	canonical	3	86	junction_1	43.8254111979188	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTATGAATGTAATCATTG	NA	False	NA	NA	False	NA	NA	NA	66589186	66580178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_66580291_66581478_66581540_66581739_66581867_66589080
ENSMUSG00000074865.12_62634460_62640748_1	chr13	-	1532	3	ISM	ENSMUSG00000074865.12	ENSMUST00000222429.2	1653	4	65673	0	27517	0	3prime_fragment	FALSE	canonical	3	40	junction_2	57.5	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTGCATATTTGTGTGT	NA	False	NA	-8	True	ATTAAA	-40	NA	62640748	62634459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_62635805_62640180_62640241_62640621
ENSMUSG00000074867.5_62277730_62321752_1	chr13	+	3090	4	FSM	ENSMUSG00000074867.5	ENSMUST00000099449.4	2571	4	0	-519	0	519	multi-exon	FALSE	canonical	3	81	junction_1	97.7422915403335	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGACCAGTCG	NA	False	NA	NA	False	NA	NA	NA	62277729	62321752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963
ENSMUSG00000074884.13_121279849_121281535_1	chr2	+	650	3	FSM	ENSMUSG00000074884.13	ENSMUST00000110615.8	876	3	-10	236	0	0	multi-exon	FALSE	canonical	1	56	junction_2	2937.5	10261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGAGCGCCTGGTTTG	NA	False	NA	-3	True	ATTAAA	-14	NA	121279848	121281535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_121279923_121280455_121280565_121281068
ENSMUSG00000074884.13_121279849_121281535_2	chr2	+	1154	2	FSM	ENSMUSG00000074884.13	ENSMUST00000134412.2	3105	2	0	1951	0	0	multi-exon	FALSE	canonical	3	5931	junction_1	0	1023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGAGCGCCTGGTTTG	NA	False	NA	-3	True	ATTAAA	-14	NA	121279848	121281535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_121279923_121280455
ENSMUSG00000074884.13_121279849_121281535_3	chr2	+	510	3	NNC	ENSMUSG00000074884.13	novel	3056	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3687.5	48886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGAGCGCCTGGTTTG	NA	False	NA	-3	True	ATTAAA	-14	NA	121279848	121281535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_121279927_121280466_121280565_121281201
ENSMUSG00000074884.13_121279849_121281535_4	chr2	+	506	3	NNC	ENSMUSG00000074884.13	novel	3056	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3687.5	26176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGAGCGCCTGGTTTG	NA	False	NA	-3	True	ATTAAA	-14	NA	121279848	121281535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_121279927_121280470_121280565_121281201
ENSMUSG00000074884.13_121279849_121288792_1	chr2	+	454	5	NIC	ENSMUSG00000074884.13	novel	1899	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	147	junction_2	2161.36542491084	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCTTCAGTTTCA	NA	False	NA	25	True	AATAAA	-20	NA	121279848	121288792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_121279923_121280455_121280565_121288126_121288183_121288472_121288525_121288629
ENSMUSG00000074884.13_121279893_121281538_1	chr2	+	548	3	NNC	ENSMUSG00000074884.13	novel	3056	3	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	3686.5	14572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGCGCCTGGTTTGACT	NA	False	NA	0	True	ATTAAA	-17	NA	121279892	121281538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_121279995_121280455_121280565_121281201
ENSMUSG00000074886.12_55599613_55608740_1	chr13	+	2127	9	ISM	ENSMUSG00000074886.12	ENSMUST00000224118.2	1997	16	6339	-872	6339	0	3prime_fragment	FALSE	canonical	3	104	junction_8	127.086338762276	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCTCCTTTTATTTC	2306	False	NA	28	True	AATACA	-30	NA	55599612	55608740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_55599657_55599947_55600139_55600859_55600898_55600984_55601075_55602129_55602339_55602418_55602557_55606605_55606744_55606825_55606961_55607596
ENSMUSG00000074887.5_42827014_42875375_1	chr7	+	542	4	Fusion	ENSMUSG00000074887.5_ENSMUSG00000064194.11	novel	810	3	NA	NA	2	-382	multi-exon	FALSE	canonical	3	215	junction_3	20.9814733091416	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATCTTCGACTACATGAAA	NA	False	NA	NA	False	NA	NA	NA	42827013	42875375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr7_+_42827128_42872998_42873126_42873324_42873386_42875135
ENSMUSG00000074887.5_42863463_42875375_1	chr7	+	537	4	FSM	ENSMUSG00000074887.5	ENSMUST00000206405.2	1428	4	0	891	0	-382	multi-exon	FALSE	canonical	3	215	junction_3	24.5356882927706	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATCTTCGACTACATGAAA	9998	False	NA	NA	False	NA	NA	NA	42863462	42875375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135
ENSMUSG00000074887.5_42863463_42875375_2	chr7	+	628	5	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	0	-382	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	133.06765196696	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATCTTCGACTACATGAAA	9998	False	NA	NA	False	NA	NA	NA	42863462	42875375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_42863572_42872998_42873126_42873324_42873386_42874876_42875157_42875324
ENSMUSG00000074887.5_42863463_42875622_1	chr7	+	616	4	NNC	ENSMUSG00000074887.5	novel	1428	4	NA	NA	0	-135	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	125.489264702426	144	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGTTGTCTCCGAAAACA	9998	False	NA	NA	False	NA	NA	NA	42863462	42875622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_42863572_42872998_42873126_42873324_42873386_42875303
ENSMUSG00000074887.5_42863463_42875622_2	chr7	+	784	4	FSM	ENSMUSG00000074887.5	ENSMUST00000206405.2	1428	4	0	644	0	-135	multi-exon	FALSE	canonical	3	215	junction_3	24.5356882927706	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGTTGTCTCCGAAAACA	9998	False	NA	NA	False	NA	NA	NA	42863462	42875622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135
ENSMUSG00000074887.5_42863463_42876713_1	chr7	+	1875	4	FSM	ENSMUSG00000074887.5	ENSMUST00000206405.2	1428	4	0	-447	0	447	multi-exon	FALSE	canonical	3	215	junction_3	24.5356882927706	1110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGGGGACACTCTTTGTA	9998	False	NA	12	True	AATAAA	-14	NA	42863462	42876713	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135
ENSMUSG00000074890.5_120970934_120986070_1	chr2	-	1433	11	Genic_Genomic	ENSMUSG00000074890.5	novel	3056	1	NA	NA	-14936	-2855	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTATCCACCGCGGCTAT	NA	False	NA	NA	False	NA	NA	NA	120986070	120970933	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_-_120971091_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
ENSMUSG00000074890.5_120970934_120987159_1	chr2	-	2522	11	Genic_Genomic	ENSMUSG00000074890.5	novel	3056	1	NA	NA	-16025	-2855	multi-exon	FALSE	non_canonical	0	0	junction_1	0	118	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTATCCACCGCGGCTAT	NA	False	NA	NA	False	NA	NA	NA	120987159	120970933	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_-_120971091_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
ENSMUSG00000074925.5_23664793_23697889_1	chr19	+	1431	7	FSM	ENSMUSG00000074925.5	ENSMUST00000237333.2	12574	7	0	11143	0	327	multi-exon	FALSE	canonical	3	15	junction_4	3.54338193757822	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTGTTTTATTTATTTT	NA	False	NA	NA	False	AAGAAA	-1	NA	23664792	23697889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_23664910_23671684_23671855_23680441_23680509_23683070_23683176_23686117_23686332_23695176_23695467_23697421
ENSMUSG00000075023.12_93685706_93760857_1	chr2	-	2335	15	NNC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-61355	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_14	11.1785143768512	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGGCCTGCTTTATTTC	NA	False	NA	0	True	AATAAA	-23	NA	93760857	93685705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93760610
ENSMUSG00000075054.6_18163420_18167913_2	chr13	-	1212	3	NNC	ENSMUSG00000075054.6	novel	1382	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	261	1811	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTGTGCTAAACTGTAA	NA	False	NA	NA	False	ATTAAA	-38	NA	18167913	18163419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_18164368_18166212_18166335_18167771
ENSMUSG00000075229.12_35892454_35912329_1	chr16	+	513	5	FSM	ENSMUSG00000075229.12	ENSMUST00000164916.9	1073	5	399	161	0	0	multi-exon	FALSE	canonical	3	859	junction_1	27.9284800875379	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTCTGAGCCAGCAGGC	NA	False	NA	NA	False	NA	NA	NA	35892453	35912329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_35892508_35903060_35903187_35905386_35905534_35910270_35910331_35912203
ENSMUSG00000075229.12_35892454_35912481_1	chr16	+	674	5	NNC	ENSMUSG00000075229.12	novel	1073	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	390.140599656073	11591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892453	35912481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_35892508_35903060_35903187_35905386_35905543_35910270_35910331_35912203
ENSMUSG00000075229.12_35892454_35912481_10	chr16	+	605	4	NIC	ENSMUSG00000075229.12	novel	1073	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	15	junction_3	415.876049910173	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892453	35912481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_35892508_35903060_35903187_35905386_35905534_35912203
ENSMUSG00000075229.12_35892454_35912481_2	chr16	+	661	5	NNC	ENSMUSG00000075229.12	novel	1073	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	392.091427475787	5329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892453	35912481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_35892516_35903072_35903187_35905386_35905534_35910270_35910331_35912203
ENSMUSG00000075229.12_35892454_35912481_3	chr16	+	332	2	NIC	ENSMUSG00000075229.12	novel	392	3	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	0	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892453	35912481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_35892508_35912203
ENSMUSG00000075229.12_35892454_35912481_4	chr16	+	717	6	NNC	ENSMUSG00000075229.12	novel	1073	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	442.653092161345	13286	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892453	35912481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_35892508_35902499_35902552_35903060_35903187_35905386_35905534_35910270_35910331_35912203
ENSMUSG00000075229.12_35892454_35912481_5	chr16	+	595	5	NNC	ENSMUSG00000075229.12	novel	1073	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	389.064262044203	885	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892453	35912481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_35892508_35903130_35903187_35905386_35905534_35910270_35910331_35912203
ENSMUSG00000075229.12_35892454_35912481_6	chr16	+	518	4	NIC	ENSMUSG00000075229.12	novel	1073	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_2	414.356797404792	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892453	35912481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_35892508_35903060_35903187_35910270_35910331_35912203
ENSMUSG00000075229.12_35892454_35912481_7	chr16	+	658	5	NNC	ENSMUSG00000075229.12	novel	1073	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	392.091427475787	15701	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892453	35912481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_35892501_35903060_35903187_35905386_35905534_35910270_35910331_35912203
ENSMUSG00000075229.12_35892454_35912481_8	chr16	+	806	6	NNC	ENSMUSG00000075229.12	novel	740	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	441.187307161029	1230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892453	35912481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_35892508_35901632_35901774_35903060_35903187_35905386_35905534_35910270_35910331_35912203
ENSMUSG00000075229.12_35892454_35912481_9	chr16	+	539	4	FSM	ENSMUSG00000075229.12	ENSMUST00000163352.9	391	4	4	-152	0	0	multi-exon	FALSE	canonical	3	31	junction_1	405.618320866085	892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892453	35912481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_35892508_35905386_35905534_35910270_35910331_35912203
ENSMUSG00000075266.6_30073094_30076556_1	chr10	-	443	3	FSM	ENSMUSG00000075266.6	ENSMUST00000099985.6	1532	3	0	1089	0	-1089	multi-exon	FALSE	canonical	3	2101	junction_1	71	15683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTAATGGCTTCTGAGT	NA	False	NA	-7	True	ATTAAA	-22	NA	30076556	30073093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_30073223_30074461_30074576_30076356
ENSMUSG00000075394.5_102943061_102945278_1	chr15	+	1743	2	FSM	ENSMUSG00000075394.5	ENSMUST00000100164.5	1983	2	240	0	240	0	multi-exon	FALSE	canonical	3	38	junction_1	0	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCAATGTCTGATGGTTTC	6212	False	NA	30	True	AATAAA	-24	NA	102943060	102945278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102943588_102944062
ENSMUSG00000075410.14_116548101_116559215_1	chr11	+	634	5	FSM	ENSMUSG00000075410.14	ENSMUST00000116318.3	799	5	167	-2	119	0	multi-exon	FALSE	canonical	1	1	junction_1	3.83242742918897	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTAAAGACTGCTTTCT	NA	False	NA	NA	False	AATAAA	-39	NA	116548100	116559215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116548134_116548363_116548433_116550123_116550203_116550558_116550654_116558857
ENSMUSG00000075410.14_116549963_116559215_1	chr11	+	693	3	ISM	ENSMUSG00000075410.14	ENSMUST00000116318.3	799	5	2029	-2	1981	0	3prime_fragment	FALSE	canonical	3	9	junction_2	0.5	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTAAAGACTGCTTTCT	NA	False	NA	NA	False	AATAAA	-39	NA	116549962	116559215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_116550203_116550558_116550654_116558857
ENSMUSG00000075410.14_116550069_116559215_1	chr11	+	492	2	NIC	ENSMUSG00000075410.14	novel	724	5	NA	NA	2087	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTAAAGACTGCTTTCT	NA	False	NA	NA	False	AATAAA	-39	NA	116550068	116559215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_116550203_116558857
ENSMUSG00000075467.5_26240307_26242112_1	chr2	-	732	3	FSM	ENSMUSG00000075467.5	ENSMUST00000028295.9	2916	3	10	2174	0	-2174	multi-exon	FALSE	canonical	3	313	junction_2	24.5	2338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCACCGGGCCTGGGCTCCT	NA	False	NA	-23	True	AGTAAA	-16	NA	26242112	26240306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_26240571_26241346_26241487_26241784
ENSMUSG00000075467.5_26240307_26242112_2	chr2	-	721	3	NNC	ENSMUSG00000075467.5	novel	2916	3	NA	NA	0	-2174	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	155.5	2060	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCACCGGGCCTGGGCTCCT	NA	False	NA	-23	True	AGTAAA	-16	NA	26242112	26240306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_26240560_26241346_26241487_26241784
ENSMUSG00000075467.5_26240307_26242112_3	chr2	-	592	2	FSM	ENSMUSG00000075467.5	ENSMUST00000125848.2	2766	2	0	2174	0	-2174	multi-exon	FALSE	canonical	3	60	junction_1	0	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCACCGGGCCTGGGCTCCT	NA	False	NA	-23	True	AGTAAA	-16	NA	26242112	26240306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_26240571_26241784
ENSMUSG00000075486.11_101871202_101877884_1	chr14	-	855	3	NNC	ENSMUSG00000075486.11	novel	1090	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	218.5	2441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATGACGTGTCTTGTG	NA	False	NA	NA	False	ATTAAA	-18	NA	101877884	101871201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_101871829_101874389_101874543_101877809
ENSMUSG00000075486.11_101871202_101878122_1	chr14	-	1078	3	FSM	ENSMUSG00000075486.11	ENSMUST00000168587.3	519	3	-229	-330	0	0	multi-exon	FALSE	canonical	3	50	junction_2	193.5	2623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATGACGTGTCTTGTG	NA	False	NA	NA	False	ATTAAA	-18	NA	101878122	101871201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_101871829_101874389_101874543_101877824
ENSMUSG00000075511.10_83241735_83251481_1	chr15	-	2193	3	NIC	ENSMUSG00000075511.10	novel	1260	4	NA	NA	2	0	intron_retention	FALSE	canonical	3	28	junction_1	13	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCCAGCTTAAGTCTCT	247	False	NA	NA	False	AATAAA	-20	NA	83251481	83241734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_83243152_83249229_83249715_83251190
ENSMUSG00000075528.14_101297665_101308232_1	chr11	-	1302	12	NNC	ENSMUSG00000075528.14	novel	1516	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	179.217906056397	2604	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTGTATACTGCCATT	NA	False	NA	-21	True	AGTAAA	-16	NA	101308232	101297664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_101297851_101298956_101299052_101300478_101300534_101300939_101301032_101301179_101301247_101301586_101301718_101301908_101302021_101302119_101302277_101302765_101302824_101304762_101304923_101307928_101308061_101308175
ENSMUSG00000075528.14_101297665_101308232_2	chr11	-	1307	12	FSM	ENSMUSG00000075528.14	ENSMUST00000070395.9	1516	12	209	0	0	0	multi-exon	FALSE	canonical	3	448	junction_11	68.1448384565145	2973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTGTATACTGCCATT	NA	False	NA	-21	True	AGTAAA	-16	NA	101308232	101297664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_101297851_101298956_101299052_101300478_101300534_101300939_101301032_101301179_101301247_101301586_101301718_101301908_101302026_101302119_101302277_101302765_101302824_101304762_101304923_101307928_101308061_101308175
ENSMUSG00000075528.14_101307347_101308232_1	chr11	-	771	2	FSM	ENSMUSG00000075528.14	ENSMUST00000125472.2	544	2	0	-227	0	227	multi-exon	FALSE	canonical	3	448	junction_1	0	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGAAGAAGAGAGTGCC	NA	False	NA	NA	False	NA	NA	NA	101308232	101307346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_101308061_101308175
ENSMUSG00000075555.13_79093511_79094518_1	chr15	+	293	2	NNC	ENSMUSG00000075555.13	novel	905	4	NA	NA	0	-5850	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTGTTTTCCATTCGAAT	3892	False	NA	NA	False	AATAAA	-29	NA	79093510	79094518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_79093676_79094390
ENSMUSG00000075585.4_138962726_138982180_1	chr5	+	1001	6	Genic_Genomic	ENSMUSG00000075585.4	novel	5521	1	NA	NA	-18085	-4151	multi-exon	FALSE	non_canonical	0	0	junction_1	0	359	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCGGCTGGTGAGGAACTC	NA	False	NA	NA	False	NA	NA	NA	138962725	138982180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_+_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138981953
ENSMUSG00000075700.11_58484119_58498424_1	chr3	+	965	6	FSM	ENSMUSG00000075700.11	ENSMUST00000107924.3	3157	6	62	2130	0	-2130	multi-exon	FALSE	canonical	3	92	junction_4	12.1061967603372	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGTGTTAAGTCGGTTG	NA	False	NA	NA	False	NA	NA	NA	58484118	58498424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115
ENSMUSG00000075700.11_58484119_58498585_1	chr3	+	1126	6	FSM	ENSMUSG00000075700.11	ENSMUST00000107924.3	3157	6	62	1969	0	-1969	multi-exon	FALSE	canonical	3	92	junction_4	12.1061967603372	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCAGATTGTGAACAGTAA	NA	False	NA	NA	False	AATACA	-15	NA	58484118	58498585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115
ENSMUSG00000075700.11_58484119_58499174_1	chr3	+	1715	6	FSM	ENSMUSG00000075700.11	ENSMUST00000107924.3	3157	6	62	1380	0	-1380	multi-exon	FALSE	canonical	3	92	junction_4	12.1061967603372	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATATTGTTCCAGAGTTC	NA	False	NA	2	True	ATTAAA	-16	NA	58484118	58499174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115
ENSMUSG00000075700.11_58484119_58500556_1	chr3	+	3069	7	NNC	ENSMUSG00000075700.11	novel	3157	6	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	3	55	junction_6	24.8758026112838	1045	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGCTTTGTGAAAATGAT	NA	False	NA	17	True	AATAAA	-20	NA	58484118	58500556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115_58499681_58499708
ENSMUSG00000075700.11_58498699_58500556_1	chr3	+	1830	2	NNC	ENSMUSG00000075700.11	novel	3157	6	NA	NA	14580	2	at_least_one_novel_splicesite	FALSE	non_canonical	3	55	junction_1	0	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGCTTTGTGAAAATGAT	NA	False	NA	17	True	AATAAA	-20	NA	58498698	58500556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_58499681_58499708
ENSMUSG00000075701.11_65729397_65739153_1	chr7	+	1184	6	NNC	ENSMUSG00000075701.11	novel	1191	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	174.974969638517	2422	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACAGTCTCTGGTTTTTCTT	NA	False	NA	7	True	AGTAAA	-16	NA	65729396	65739153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_65729538_65730079_65730215_65733147_65733255_65736701_65736785_65736940_65737020_65738514
ENSMUSG00000075702.11_3464867_3467351_2	chr11	+	672	4	NIC	ENSMUSG00000075702.11	novel	707	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	68.794379615392	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGAGTCTCTTCTTATTT	NA	False	NA	22	True	ACTAAA	-14	NA	3464866	3467351	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_3465074_3466260_3466297_3466841_3466921_3467001
ENSMUSG00000075704.18_18245188_18256562_1	chr16	+	548	4	NNC	ENSMUSG00000075704.18	novel	532	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	70.2819717676984	462	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTCCCTGACTGTCTCT	NA	False	NA	12	True	NA	NA	NA	18245187	18256562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_18245310_18248568_18248627_18255310_18255368_18256251
ENSMUSG00000075704.18_18290571_18297820_1	chr16	+	1017	7	NIC	ENSMUSG00000075704.18	novel	403	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	35.6588776541769	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGTCTGCGTGTGCTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	18290570	18297820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_18290809_18290903_18291000_18291543_18291637_18293431_18293504_18294271_18294370_18296400_18296608_18297607
ENSMUSG00000075705.14_24955616_24961746_1	chr17	+	877	4	NNC	ENSMUSG00000075705.14	novel	886	5	NA	NA	0	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	79.934695568042	1624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGTTTCCGTGTTTGTTGT	NA	False	NA	13	True	AATAAA	-13	NA	24955615	24961746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_24955737_24958472_24958622_24959053_24959169_24961254
ENSMUSG00000075706.12_79883000_79892273_2	chr10	+	1024	8	NIC	ENSMUSG00000075706.12	novel	879	7	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	15	junction_1	3737.97184995024	9081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	1947	False	NA	4	True	AATAAA	-14	NA	79882999	79892273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_79883210_79884579_79884663_79890347_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
ENSMUSG00000075706.12_79889322_79892273_1	chr10	+	939	6	NNC	ENSMUSG00000075706.12	novel	959	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	4277.74270381004	5495	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	655	False	NA	4	True	AATAAA	-14	NA	79889321	79892273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79889550_79890347_79890443_79890533_79890679_79890808_79890954_79891861_79891934_79892019
ENSMUSG00000075706.12_79889473_79892273_1	chr10	+	819	6	NNC	ENSMUSG00000075706.12	novel	959	7	NA	NA	151	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3501.52712969641	4089	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	806	False	NA	4	True	AATAAA	-14	NA	79889472	79892273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79890954_79891837_79891934_79892019
ENSMUSG00000075706.12_79889473_79892273_2	chr10	+	789	7	NNC	ENSMUSG00000075706.12	novel	959	7	NA	NA	151	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3167.84462739784	9542	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	806	False	NA	4	True	AATAAA	-14	NA	79889472	79892273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79889550_79890347_79890443_79890533_79890679_79890820_79890954_79891756_79891782_79891873_79891934_79892019
ENSMUSG00000075706.12_79889473_79892273_3	chr10	+	771	7	NNC	ENSMUSG00000075706.12	novel	959	7	NA	NA	151	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	3194.06665640458	3185	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	806	False	NA	4	True	AATAAA	-14	NA	79889472	79892273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892056
ENSMUSG00000075706.12_79889473_79892273_4	chr10	+	931	6	NIC	ENSMUSG00000075706.12	novel	959	7	NA	NA	151	0	intron_retention	FALSE	canonical	3	7423	junction_4	812.745815123031	5533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	806	False	NA	4	True	AATAAA	-14	NA	79889472	79892273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_79889550_79890347_79890443_79890533_79890954_79891756_79891782_79891873_79891934_79892019
ENSMUSG00000075706.12_79889473_79892273_5	chr10	+	797	7	NNC	ENSMUSG00000075706.12	novel	959	7	NA	NA	151	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	3167.84462739784	22888	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	806	False	NA	4	True	AATAAA	-14	NA	79889472	79892273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79889550_79890347_79890443_79890533_79890679_79890812_79890954_79891756_79891782_79891873_79891934_79892019
ENSMUSG00000075706.12_79889473_79892273_6	chr10	+	799	6	NNC	ENSMUSG00000075706.12	novel	959	7	NA	NA	151	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3501.52712969641	5716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	806	False	NA	4	True	AATAAA	-14	NA	79889472	79892273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79890954_79891857_79891934_79892019
ENSMUSG00000075706.12_79889473_79892273_7	chr10	+	663	6	NIC	ENSMUSG00000075706.12	novel	959	7	NA	NA	151	0	combination_of_known_junctions	FALSE	canonical	3	65	junction_2	3142.91138914224	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	806	False	NA	4	True	AATAAA	-14	NA	79889472	79892273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_79889550_79890347_79890443_79890801_79890954_79891756_79891782_79891873_79891934_79892019
ENSMUSG00000075706.12_79889473_79892273_8	chr10	+	796	7	NNC	ENSMUSG00000075706.12	novel	959	7	NA	NA	151	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	3194.06665640458	10006	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	806	False	NA	4	True	AATAAA	-14	NA	79889472	79892273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892031
ENSMUSG00000075706.12_79889473_79892273_9	chr10	+	801	6	NNC	ENSMUSG00000075706.12	novel	959	7	NA	NA	151	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3501.52712969641	6783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	806	False	NA	4	True	AATAAA	-14	NA	79889472	79892273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79890972_79891873_79891934_79892019
ENSMUSG00000076432.14_21440072_21467589_1	chr12	-	2148	6	FSM	ENSMUSG00000076432.14	ENSMUST00000135088.9	2197	6	49	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_5	274.352328220484	12122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGGCTGGTATTAGAAT	NA	False	NA	-12	True	AATAAA	-18	NA	21467589	21440071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
ENSMUSG00000076432.14_21440330_21467589_1	chr12	-	1890	6	FSM	ENSMUSG00000076432.14	ENSMUST00000135088.9	2197	6	49	258	0	0	multi-exon	FALSE	canonical	3	2872	junction_5	274.352328220484	11870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTATGGCTTTGTAACA	NA	False	NA	NA	False	AATAAA	-20	NA	21467589	21440329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
ENSMUSG00000076432.14_21440677_21467589_1	chr12	-	1543	6	FSM	ENSMUSG00000076432.14	ENSMUST00000135088.9	2197	6	49	605	0	-344	multi-exon	FALSE	canonical	3	2872	junction_5	274.352328220484	8046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTCGTAGCTCTGGTAT	NA	False	NA	NA	False	AATAAA	-18	NA	21467589	21440676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
ENSMUSG00000076437.12_84499565_84501020_1	chr2	-	641	4	NNC	ENSMUSG00000076437.12	novel	747	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	959.319318869143	29573	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAGCAAGTTTAAATTT	390	False	NA	-14	True	AATAAA	-19	NA	84501020	84499564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_84499742_84500330_84500461_84500588_84500729_84500826
ENSMUSG00000076441.10_31360219_31410684_1	chr2	+	1564	15	NIC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	195	junction_12	721.33651817233	5446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTCTGCGTGTGTGCC	NA	False	NA	27	True	ATTAAA	-22	NA	31360218	31410684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31404690_31404848_31408737_31408804_31410383
ENSMUSG00000076749.3_19382057_19401194_1	chr13	+	1185	4	NNC	ENSMUSG00000076749.3	novel	924	3	NA	NA	-16216	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	1.69967317119759	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTCTATTTTTGTCAGTC	NA	False	NA	NA	False	AATATA	-15	NA	19382056	19401194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_19382318_19398272_19398603_19400033_19400079_19400645
ENSMUSG00000077450.14_33965575_33979305_2	chr17	-	1793	5	FSM	ENSMUSG00000077450.14	ENSMUST00000057373.14	6109	5	199	4117	-25	149	multi-exon	FALSE	canonical	3	562	junction_1	25.4411084664171	798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACCACTCAGCTTCTGTC	NA	False	NA	-10	True	ACTAAA	-27	NA	33979305	33965574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968952_33979196
ENSMUSG00000077450.14_33965575_33979458_1	chr17	-	1946	5	FSM	ENSMUSG00000077450.14	ENSMUST00000057373.14	6109	5	46	4117	0	149	multi-exon	FALSE	canonical	3	562	junction_1	25.4411084664171	846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACCACTCAGCTTCTGTC	NA	False	NA	-10	True	ACTAAA	-27	NA	33979458	33965574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968952_33979196
ENSMUSG00000077450.14_33966388_33979305_1	chr17	-	980	5	FSM	ENSMUSG00000077450.14	ENSMUST00000057373.14	6109	5	199	4930	-25	0	multi-exon	FALSE	canonical	3	562	junction_1	25.4411084664171	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCCCTTCACCAGTGTC	NA	False	NA	NA	False	NA	NA	NA	33979305	33966387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968952_33979196
ENSMUSG00000078427.4_128657777_128670570_1	chr10	+	1454	2	ISM	ENSMUSG00000078427.4	ENSMUST00000220150.2	423	4	0	5312	0	-5312	5prime_fragment	FALSE	canonical	3	4500	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAGAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	128657776	128670570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_128657841_128669180
ENSMUSG00000078427.4_128657801_128713498_11	chr10	+	789	10	NIC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	13	junction_1	1506.97622188717	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657800	128713498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_128657841_128674315_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ENSMUSG00000078427.4_128657801_128713498_12	chr10	+	939	12	NNC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1678.56975718975	2196	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657800	128713498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_128657841_128660647_128660701_128669180_128669281_128674318_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ENSMUSG00000078427.4_128657801_128713498_13	chr10	+	886	11	NNC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	1482.17282730456	9255	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657800	128713498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713207
ENSMUSG00000078427.4_128657801_128713498_14	chr10	+	945	12	NNC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	390	junction_1	1520.20222121546	5195	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657800	128713498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_128657841_128660647_128660701_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ENSMUSG00000078427.4_128657801_128713498_15	chr10	+	881	11	NNC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	1482.17282730456	6167	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657800	128713498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713212
ENSMUSG00000078427.4_128657801_128713498_2	chr10	+	919	11	NNC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_8	1763.37473045295	835	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657800	128713498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_128657841_128660647_128660701_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128689051_128689121_128708289_128708380_128713201
ENSMUSG00000078427.4_128657801_128713498_3	chr10	+	883	11	NNC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1504.94254043136	2998	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657800	128713498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_128657841_128669180_128669281_128674321_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ENSMUSG00000078427.4_128657801_128713498_4	chr10	+	880	11	NNC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1593.49827737591	3331	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657800	128713498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_128657841_128669180_128669281_128674315_128674360_128675670_128675739_128682400_128682453_128684114_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ENSMUSG00000078427.4_128657801_128713498_6	chr10	+	886	11	NNC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	1522.74104495807	8301	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657800	128713498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708295_128708380_128713201
ENSMUSG00000078427.4_128657801_128713498_7	chr10	+	863	10	NIC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_7	1571.91297311961	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657800	128713498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_128657841_128669180_128669281_128674315_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128689051_128689121_128708289_128708380_128713201
ENSMUSG00000078427.4_128657801_128713498_8	chr10	+	889	11	NIC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	1288	junction_2	1269.59119798461	7248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657800	128713498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_128657841_128669180_128669281_128674315_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ENSMUSG00000078435.6_81963847_81986758_1	chr10	+	526	5	NNC	ENSMUSG00000078435.6	novel	2634	4	NA	NA	0	-1087	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3.53553390593274	172	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTGTGGTAAATCCTTTC	NA	False	NA	NA	False	NA	NA	NA	81963846	81986758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_81963933_81974086_81974214_81979420_81979454_81986050_81986112_81986539
ENSMUSG00000078435.6_81963847_81986758_2	chr10	+	493	4	FSM	ENSMUSG00000078435.6	ENSMUST00000201286.4	2634	4	0	2141	0	-1087	multi-exon	FALSE	canonical	1	5	junction_2	1.24721912892465	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTGTGGTAAATCCTTTC	NA	False	NA	NA	False	NA	NA	NA	81963846	81986758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_81963933_81974086_81974214_81986050_81986112_81986539
ENSMUSG00000078435.6_81963847_82002619_1	chr10	+	610	5	Fusion	ENSMUSG00000078435.6_ENSMUSG00000112847.2	novel	2634	4	NA	NA	0	1	multi-exon	FALSE	canonical	0	0	junction_4	2.8613807855649	54	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATACGCTGTTGCCTCAAT	NA	False	NA	NA	False	AATACA	-14	NA	81963846	82002619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr10_+_81963933_81974086_81974214_81986050_81986112_81993396_81993474_82002360
ENSMUSG00000078440.11_81220262_81224186_1	chr10	+	1438	5	NNC	ENSMUSG00000078440.11	novel	1444	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	343.163499661604	3447	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGGCTCCTGCTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	81220261	81224186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_81220413_81221552_81221882_81222252_81222324_81223073_81223315_81223540
ENSMUSG00000078440.11_81220262_81224186_2	chr10	+	1670	4	ISM	ENSMUSG00000078440.11	ENSMUST00000072751.13	1444	5	0	0	0	0	intron_retention	FALSE	canonical	3	742	junction_3	22.6862660362314	3366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGGCTCCTGCTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	81220261	81224186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr10_+_81220413_81221552_81221882_81222246_81222324_81223073
ENSMUSG00000078452.11_22237793_22249904_1	chr10	+	1159	7	NNC	ENSMUSG00000078452.11	novel	1271	7	NA	NA	0	-134	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	16.5672032106274	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAACACATTTTAAAATG	NA	False	NA	NA	False	AATAAA	-24	NA	22237792	22249904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_22237831_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
ENSMUSG00000078452.11_22237793_22250038_1	chr10	+	1293	7	NNC	ENSMUSG00000078452.11	novel	1271	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	16.5672032106274	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	22237792	22250038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_22237831_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
ENSMUSG00000078453.4_17887008_17898626_1	chr10	-	689	3	FSM	ENSMUSG00000078453.4	ENSMUST00000218994.2	425	3	0	-264	0	0	multi-exon	FALSE	canonical	1	1	junction_2	71	1430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTGGTGGCTGTGTTTT	NA	False	NA	-4	True	AATAAA	-22	NA	17898626	17887007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_17887565_17894586_17894654_17898561
ENSMUSG00000078495.11_147838431_147860301_4	chr4	-	2684	4	NNC	ENSMUSG00000078495.11	novel	2405	4	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	106.377733676847	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	8362	False	NA	NA	False	NA	NA	NA	147860301	147838430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845826_147860154
ENSMUSG00000078495.11_147838431_147894035_1	chr4	-	2623	5	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	210	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	107.790015771406	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9733	False	NA	NA	False	NA	NA	NA	147894035	147838430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845736_147891546_147891641_147893953
ENSMUSG00000078495.11_147838431_147894035_2	chr4	-	2670	5	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	210	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	104.446158378372	775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9733	False	NA	NA	False	NA	NA	NA	147894035	147838430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845783_147891546_147891641_147893953
ENSMUSG00000078495.11_147840447_147860301_1	chr4	-	451	3	NIC	ENSMUSG00000078495.11	novel	2405	4	NA	NA	-11	-1791	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	9	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTGTTTTCTACCATT	8362	False	NA	NA	False	AATACA	-19	NA	147860301	147840446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_147840693_147845677_147845736_147860154
ENSMUSG00000078495.11_147840447_147860301_2	chr4	-	578	4	NIC	ENSMUSG00000078495.11	novel	2405	4	NA	NA	-11	-1791	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	106.377733676847	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTGTTTTCTACCATT	8362	False	NA	NA	False	AATACA	-19	NA	147860301	147840446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_147840693_147842158_147842286_147845677_147845736_147860154
ENSMUSG00000078495.11_147840447_147860301_3	chr4	-	625	4	FSM	ENSMUSG00000078495.11	ENSMUST00000122309.2	2405	4	-11	1791	-11	-1791	multi-exon	FALSE	canonical	0	0	junction_3	106.377733676847	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTGTTTTCTACCATT	8362	False	NA	NA	False	AATACA	-19	NA	147860301	147840446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_147840693_147842158_147842286_147845677_147845783_147860154
ENSMUSG00000078496.10_147314717_147597037_1	chr4	+	641	4	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078496.10	novel	1244	3	NA	NA	-24	-840	multi-exon	FALSE	canonical	0	0	junction_1	138.96362433705	1145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	4086	False	NA	17	True	NA	NA	NA	147314716	147597037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_147314893_147591995_147592098_147595209_147595337_147596801
ENSMUSG00000078496.10_147318780_147597037_1	chr4	+	566	4	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-258094	-840	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	138.96362433705	778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	8149	False	NA	17	True	NA	NA	NA	147318779	147597037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147318928_147592042_147592098_147595209_147595337_147596801
ENSMUSG00000078496.10_147395002_147597037_1	chr4	+	610	4	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-181872	-840	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	137.215969268239	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	NA	False	NA	17	True	NA	NA	NA	147395001	147597037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147395147_147591995_147592098_147595209_147595337_147596801
ENSMUSG00000078496.10_147395002_147597037_2	chr4	+	563	4	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-181872	-840	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	137.652541648246	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	NA	False	NA	17	True	NA	NA	NA	147395001	147597037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147395147_147592042_147592098_147595209_147595337_147596801
ENSMUSG00000078496.10_147445762_147597037_1	chr4	+	613	4	Fusion	ENSMUSG00000078497.10_ENSMUSG00000078496.10	novel	1244	3	NA	NA	2	-840	multi-exon	FALSE	canonical	1	3	junction_1	137.652541648246	918	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	2371	False	NA	17	True	NA	NA	NA	147445761	147597037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_147445910_147591995_147592098_147595209_147595337_147596801
ENSMUSG00000078496.10_147445762_147597037_2	chr4	+	566	4	Fusion	ENSMUSG00000078497.10_ENSMUSG00000078496.10	novel	1244	3	NA	NA	2	-840	multi-exon	FALSE	canonical	0	0	junction_1	138.96362433705	871	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	2371	False	NA	17	True	NA	NA	NA	147445761	147597037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_147445910_147592042_147592098_147595209_147595337_147596801
ENSMUSG00000078496.10_147576874_147594077_1	chr4	+	1090	3	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	0	-3800	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	31	350	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATCCGTTATTTCTGCA	NA	False	NA	13	True	AAGAAA	-16	NA	147576873	147594077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147577009_147592042_147592098_147593177
ENSMUSG00000078496.10_147576874_147596904_1	chr4	+	467	4	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	0	-973	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	117.848301736691	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCTTAGCAATGTTATTC	NA	False	NA	NA	False	NA	NA	NA	147576873	147596904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147577009_147591995_147592098_147595209_147595337_147596801
ENSMUSG00000078496.10_147576874_147596904_2	chr4	+	420	4	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	0	-973	at_least_one_novel_splicesite	FALSE	canonical	3	110	junction_1	92.8906166771793	89	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCTTAGCAATGTTATTC	NA	False	NA	NA	False	NA	NA	NA	147576873	147596904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801
ENSMUSG00000078496.10_147576874_147597037_1	chr4	+	651	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	0	-840	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	123.241632576009	895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	NA	False	NA	17	True	NA	NA	NA	147576873	147597037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147577009_147578832_147578931_147592042_147592098_147595209_147595337_147596801
ENSMUSG00000078496.10_147576874_147597037_2	chr4	+	553	4	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	0	-840	at_least_one_novel_splicesite	FALSE	canonical	3	110	junction_1	92.8906166771793	787	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	NA	False	NA	17	True	NA	NA	NA	147576873	147597037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801
ENSMUSG00000078496.10_147576874_147597037_3	chr4	+	600	4	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	0	-840	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	117.848301736691	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTGAATGTGACAAATG	NA	False	NA	17	True	NA	NA	NA	147576873	147597037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147577009_147591995_147592098_147595209_147595337_147596801
ENSMUSG00000078496.10_147576874_147597205_1	chr4	+	721	4	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	0	-672	at_least_one_novel_splicesite	FALSE	canonical	3	110	junction_1	92.8906166771793	1059	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGTGACTGTGACAAATG	NA	False	NA	NA	False	NA	NA	NA	147576873	147597205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801
ENSMUSG00000078496.10_147576874_147597205_2	chr4	+	768	4	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	0	-672	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	117.848301736691	956	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGTGACTGTGACAAATG	NA	False	NA	NA	False	NA	NA	NA	147576873	147597205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147577009_147591995_147592098_147595209_147595337_147596801
ENSMUSG00000078497.10_147395002_147481125_1	chr4	+	950	5	NNC	ENSMUSG00000078497.10	novel	572	5	NA	NA	-50758	5664	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_4	233.417008806128	418	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGTATAATGGTATTCT	NA	False	NA	12	True	NA	NA	NA	147395001	147481125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147395147_147447267_147447362_147469673_147469759_147472778_147472906_147480626
ENSMUSG00000078498.6_147395002_147415919_1	chr4	+	571	4	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4871	-1007	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	75.7935793234933	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTTAAGCCCAGGAACACT	NA	False	NA	NA	False	NA	NA	NA	147395001	147415919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147395147_147409230_147409335_147413438_147413566_147415724
ENSMUSG00000078500.4_145508065_145625750_1	chr4	+	739	7	NNC	ENSMUSG00000078500.4	novel	1427	4	NA	NA	-87299	-782	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_4	100.188156319331	234	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTGTTTTCTACCATT	NA	False	NA	NA	False	AATACA	-19	NA	145508064	145625750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_145508131_145510590_145510684_145541336_145541383_145598857_145598909_145618982_145619087_145623213_145623341_145625498
ENSMUSG00000078500.4_145508065_145625750_2	chr4	+	688	6	NNC	ENSMUSG00000078500.4	novel	1427	4	NA	NA	-87299	-782	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	97.5807358037436	198	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTGTTTTCTACCATT	NA	False	NA	NA	False	AATACA	-19	NA	145508064	145625750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_145508131_145510590_145510684_145541336_145541383_145618982_145619087_145623213_145623341_145625498
ENSMUSG00000078500.4_145590649_145625750_1	chr4	+	739	5	NNC	ENSMUSG00000078500.4	novel	1427	4	NA	NA	-4715	-782	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	86.3495801958527	755	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTGTTTTCTACCATT	5448	False	NA	NA	False	AATACA	-19	NA	145590648	145625750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_145590812_145593464_145593558_145618982_145619087_145623213_145623341_145625498
ENSMUSG00000078500.4_145595364_145625750_1	chr4	+	505	3	NIC	ENSMUSG00000078500.4	novel	1427	4	NA	NA	0	-782	combination_of_known_splicesites	FALSE	canonical	3	50	junction_1	7	151	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTGTTTTCTACCATT	NA	False	NA	NA	False	AATACA	-19	NA	145595363	145625750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_145595513_145618982_145619087_145625498
ENSMUSG00000078502.11_145237359_145348950_1	chr4	+	644	5	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-2	-835	multi-exon	FALSE	non_canonical	0	0	junction_1	22.5111083689809	144	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTGTAA	924	False	NA	NA	False	AATACA	-2	NA	145237358	145348950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_145237496_145239546_145239640_145343687_145343746_145347127_145347255_145348721
ENSMUSG00000078502.11_145237359_145351915_1	chr4	+	625	6	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-2	0	multi-exon	FALSE	non_canonical	0	0	junction_1	21.8942914934464	361	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	924	False	NA	NA	False	NA	NA	NA	145237358	145351915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_145237496_145239546_145239640_145343687_145343746_145347127_145347255_145348721_145348838_145351821
ENSMUSG00000078502.11_145237359_145351915_2	chr4	+	2349	7	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-2	0	multi-exon	TRUE	non_canonical	0	0	junction_1	21.221058723196	346	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	924	False	NA	NA	False	NA	NA	NA	145237358	145351915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_145237496_145239546_145239640_145343687_145343746_145347127_145347255_145348721_145349420_145350511_145351528_145351695
ENSMUSG00000078502.11_145237359_145351915_3	chr4	+	2348	7	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-2	0	multi-exon	TRUE	non_canonical	0	0	junction_1	21.221058723196	349	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	924	False	NA	NA	False	NA	NA	NA	145237358	145351915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_145237496_145239546_145239640_145343687_145343746_145347127_145347255_145348721_145349454_145350546_145351528_145351695
ENSMUSG00000078502.11_145241444_145351915_1	chr4	+	2515	5	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-10	0	multi-exon	TRUE	canonical	0	0	junction_4	18.4661853126194	691	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	5009	False	NA	NA	False	NA	NA	NA	145241443	145351915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_145241589_145343687_145343746_145347127_145347255_145348721_145349286_145350294
ENSMUSG00000078502.11_145241444_145351915_2	chr4	+	2514	6	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-10	0	multi-exon	TRUE	canonical	0	0	junction_4	20.6533290294809	768	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	5009	False	NA	NA	False	NA	NA	NA	145241443	145351915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_145241589_145343687_145343746_145347127_145347255_145348721_145349286_145349370_145349913_145350837
ENSMUSG00000078502.11_145311773_145348950_1	chr4	+	686	5	NNC	ENSMUSG00000078502.11	novel	2498	5	NA	NA	0	-835	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_2	40.4436336151934	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTGTAA	NA	False	NA	NA	False	AATACA	-2	NA	145311772	145348950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_145311905_145314001_145314095_145343640_145343746_145347127_145347255_145348721
ENSMUSG00000078502.11_145311773_145351915_1	chr4	+	2722	8	NNC	ENSMUSG00000078502.11	novel	2498	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	22.7891846886963	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145311772	145351915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_145311905_145312571_145312707_145313929_145314095_145322185_145322345_145343687_145343746_145347127_145347255_145348721_145348860_145350107
ENSMUSG00000078503.10_145237361_145263412_1	chr4	+	618	4	FSM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	32	2346	0	1923	multi-exon	FALSE	canonical	3	98	junction_2	195.188797492752	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTGTTTTCTACCATT	926	False	NA	27	True	AATACA	-19	NA	145237360	145263412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160
ENSMUSG00000078503.10_145237361_145265524_1	chr4	+	2730	4	FSM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	32	234	0	-234	multi-exon	FALSE	canonical	3	98	junction_2	195.188797492752	1037	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCTTAAAAGAGTATCTG	926	False	NA	40	True	AATAAA	-16	NA	145237360	145265524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160
ENSMUSG00000078503.10_145241454_145263412_1	chr4	+	618	4	NIC	ENSMUSG00000078503.10	novel	3044	5	NA	NA	0	1923	combination_of_known_splicesites	FALSE	canonical	3	25	junction_1	226.592634969061	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTGTTTTCTACCATT	5019	False	NA	27	True	AATACA	-19	NA	145241453	145263412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_145241589_145257381_145257486_145261385_145261513_145263160
ENSMUSG00000078521.3_134238441_134251238_1	chr4	+	1144	3	FSM	ENSMUSG00000078521.3	ENSMUST00000105866.3	1275	3	131	0	131	0	multi-exon	FALSE	canonical	3	435	junction_2	7.5	1965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTGGTGTCGTGCTTCC	NA	False	NA	20	True	AATAAA	-20	NA	134238440	134251238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_134238481_134248782_134248913_134250264
ENSMUSG00000078546.9_22100821_22128641_1	chr17	-	548	4	NNC	ENSMUSG00000078546.9	novel	2221	5	NA	NA	-21	-2270	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6.94422221866655	247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGTCTTCATTGCTTTTC	NA	False	NA	NA	False	AATAAA	-21	NA	22128641	22100820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_22101060_22106285_22106340_22127029_22127178_22128534
ENSMUSG00000078552.11_129494484_129502321_1	chr4	-	1359	4	NIC	ENSMUSG00000078552.11	novel	864	7	NA	NA	720	7640	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	524	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGCGAGAGGGCGGAGCC	NA	False	NA	NA	False	NA	NA	NA	129502321	129494483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_129494525_129494775_129494928_129500879_129500973_129501248
ENSMUSG00000078566.9_138492693_138511235_2	chr7	-	1628	6	FSM	ENSMUSG00000078566.9	ENSMUST00000106112.2	1756	6	0	128	0	-128	multi-exon	FALSE	canonical	3	289	junction_2	24.8628236529965	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGTTTATATTTACATAA	NA	False	NA	-24	True	AATAAA	-19	NA	138511235	138492692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_138493690_138496108_138496259_138496338_138496446_138499724_138499807_138500409_138500558_138511091
ENSMUSG00000078566.9_138493216_138511235_2	chr7	-	1105	6	FSM	ENSMUSG00000078566.9	ENSMUST00000106112.2	1756	6	0	651	0	-651	multi-exon	FALSE	canonical	3	289	junction_2	24.8628236529965	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGGCCTTATAATCCT	NA	False	NA	NA	False	ATTAAA	-28	NA	138511235	138493215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_138493690_138496108_138496259_138496338_138496446_138499724_138499807_138500409_138500558_138511091
ENSMUSG00000078566.9_138493390_138511235_1	chr7	-	931	6	FSM	ENSMUSG00000078566.9	ENSMUST00000106112.2	1756	6	0	825	0	-825	multi-exon	FALSE	canonical	3	289	junction_2	24.8628236529965	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATATAAATAGTAAATTTCT	NA	False	NA	NA	False	AGTAAA	-16	NA	138511235	138493389	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_138493690_138496108_138496259_138496338_138496446_138499724_138499807_138500409_138500558_138511091
ENSMUSG00000078572.4_119989770_119991250_1	chr11	+	478	3	NNC	ENSMUSG00000078572.4	novel	781	3	NA	NA	0	10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	472	5565	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGTCTCTCCCAAGGACAA	NA	False	NA	16	True	TATAAA	-16	NA	119989769	119991250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_119989892_119989973_119990085_119991005
ENSMUSG00000078578.10_135144077_135171060_1	chr3	+	671	8	FSM	ENSMUSG00000078578.10	ENSMUST00000106291.10	1512	8	82	759	0	2	multi-exon	FALSE	canonical	2	536	junction_1	766.131549422427	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTTGATTTTCTTATC	NA	False	NA	9	True	AATAAA	-16	NA	135144076	135171060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135144114_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144077_135171060_2	chr3	+	881	8	NIC	ENSMUSG00000078578.10	novel	738	8	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	2	37	junction_1	932.389841389604	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTTGATTTTCTTATC	NA	False	NA	9	True	AATAAA	-16	NA	135144076	135171060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_135144324_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144077_135171821_1	chr3	+	1512	8	FSM	ENSMUSG00000078578.10	ENSMUST00000199613.5	738	8	0	-774	0	2	multi-exon	FALSE	canonical	2	236	junction_1	865.692126071883	1120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTAGCTGCCTGGATTA	NA	False	NA	75	True	AATAAA	-15	NA	135144076	135171821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135144194_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144077_135172436_1	chr3	+	2047	8	FSM	ENSMUSG00000078578.10	ENSMUST00000106291.10	1512	8	82	-617	0	0	multi-exon	FALSE	canonical	2	536	junction_1	766.131549422427	1315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTGTTTGACAAGTGC	NA	False	NA	13	True	AATAAA	-14	NA	135144076	135172436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135144114_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144077_135172436_2	chr3	+	2127	8	FSM	ENSMUSG00000078578.10	ENSMUST00000199613.5	738	8	0	-1389	0	0	multi-exon	FALSE	canonical	2	236	junction_1	865.692126071883	1614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTGTTTGACAAGTGC	NA	False	NA	13	True	AATAAA	-14	NA	135144076	135172436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135144194_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144294_135171060_1	chr3	+	800	8	FSM	ENSMUSG00000078578.10	ENSMUST00000166033.6	2504	8	53	1651	0	2	multi-exon	FALSE	canonical	2	723	junction_1	704.867942473291	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTTGATTTTCTTATC	NA	False	NA	9	True	AATAAA	-16	NA	135144293	135171060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135144460_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144294_135171060_2	chr3	+	664	8	NIC	ENSMUSG00000078578.10	novel	2504	8	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	2	37	junction_1	932.389841389604	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTTGATTTTCTTATC	NA	False	NA	9	True	AATAAA	-16	NA	135144293	135171060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_135144324_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144294_135171821_1	chr3	+	1561	8	FSM	ENSMUSG00000078578.10	ENSMUST00000166033.6	2504	8	53	890	0	2	multi-exon	FALSE	canonical	2	723	junction_1	704.867942473291	1205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTAGCTGCCTGGATTA	NA	False	NA	75	True	AATAAA	-15	NA	135144293	135171821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135144460_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144294_135172436_1	chr3	+	2176	8	FSM	ENSMUSG00000078578.10	ENSMUST00000166033.6	2504	8	53	275	0	0	multi-exon	FALSE	canonical	2	723	junction_1	704.867942473291	1811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTGTTTGACAAGTGC	NA	False	NA	13	True	AATAAA	-14	NA	135144293	135172436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135144460_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144515_135171060_1	chr3	+	745	8	FSM	ENSMUSG00000078578.10	ENSMUST00000197859.5	3833	8	189	2899	0	2	multi-exon	FALSE	canonical	2	870	junction_1	657.273775778808	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTTGATTTTCTTATC	NA	False	NA	9	True	AATAAA	-16	NA	135144514	135171060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144515_135171821_1	chr3	+	1506	8	FSM	ENSMUSG00000078578.10	ENSMUST00000197859.5	3833	8	189	2138	0	2	multi-exon	FALSE	canonical	2	870	junction_1	657.273775778808	951	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTAGCTGCCTGGATTA	NA	False	NA	75	True	AATAAA	-15	NA	135144514	135171821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135144515_135172436_1	chr3	+	2121	8	FSM	ENSMUSG00000078578.10	ENSMUST00000197859.5	3833	8	189	1523	0	0	multi-exon	FALSE	canonical	2	870	junction_1	657.273775778808	1435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTGTTTGACAAGTGC	NA	False	NA	13	True	AATAAA	-14	NA	135144514	135172436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135145190_135171060_1	chr3	+	849	7	FSM	ENSMUSG00000078578.10	ENSMUST00000197539.5	2515	7	292	1374	218	2	multi-exon	FALSE	canonical	2	2193	junction_4	278.873129258131	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTTGATTTTCTTATC	NA	False	NA	9	True	AATAAA	-16	NA	135145189	135171060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078578.10_135145190_135171821_1	chr3	+	1610	7	FSM	ENSMUSG00000078578.10	ENSMUST00000197539.5	2515	7	292	613	218	2	multi-exon	FALSE	canonical	2	2193	junction_4	278.873129258131	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTAGCTGCCTGGATTA	NA	False	NA	75	True	AATAAA	-15	NA	135145189	135171821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUSG00000078584.10_119083206_119089884_1	chr4	-	906	5	FSM	ENSMUSG00000078584.10	ENSMUST00000144309.2	441	5	-2	-463	-2	373	multi-exon	FALSE	canonical	3	17	junction_4	161.922049147113	847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTTGTCTTTCTTTGTGT	NA	False	NA	-5	True	NA	NA	NA	119089884	119083205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089832
ENSMUSG00000078584.10_119083206_119089884_2	chr4	-	959	5	FSM	ENSMUSG00000078584.10	ENSMUST00000141112.2	7151	5	25	6167	-2	373	multi-exon	FALSE	canonical	3	317	junction_4	34.1869858279434	2796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTTGTCTTTCTTTGTGT	NA	False	NA	-5	True	NA	NA	NA	119089884	119083205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089779
ENSMUSG00000078584.10_119083405_119089884_1	chr4	-	873	4	ISM	ENSMUSG00000078584.10	ENSMUST00000144309.2	441	5	-2	-264	-2	174	intron_retention	FALSE	canonical	3	375	junction_1	15.4344492037203	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATGATGTAGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	119089884	119083404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550
ENSMUSG00000078584.10_119083405_119089884_2	chr4	-	760	5	FSM	ENSMUSG00000078584.10	ENSMUST00000141112.2	7151	5	25	6366	-2	174	multi-exon	FALSE	canonical	3	317	junction_4	34.1869858279434	2074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATGATGTAGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	119089884	119083404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089779
ENSMUSG00000078584.10_119083405_119089884_3	chr4	-	591	4	NIC	ENSMUSG00000078584.10	novel	441	5	NA	NA	-2	174	combination_of_known_splicesites	FALSE	canonical	3	9	junction_3	174.450247603404	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATGATGTAGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	119089884	119083404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_119083725_119083997_119084130_119085223_119085311_119089832
ENSMUSG00000078584.10_119083405_119089884_4	chr4	-	707	5	FSM	ENSMUSG00000078584.10	ENSMUST00000144309.2	441	5	-2	-264	-2	174	multi-exon	FALSE	canonical	3	17	junction_4	161.922049147113	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATGATGTAGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	119089884	119083404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089832
ENSMUSG00000078619.11_106154005_106156041_1	chr11	-	1433	6	ISM	ENSMUSG00000078619.11	ENSMUST00000106843.8	2548	12	2584	0	-279	0	3prime_fragment	FALSE	canonical	3	510	junction_5	34.6028900527109	410	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCAGACCTGGTCATTGA	5533	False	NA	-7	True	AATAAA	-20	NA	106156041	106154004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_106154946_106155020_106155123_106155258_106155382_106155497_106155634_106155765_106155864_106156008
ENSMUSG00000078622.9_106090180_106107170_1	chr11	-	3247	13	FSM	ENSMUSG00000078622.9	ENSMUST00000002043.10	5193	13	0	1946	0	1425	multi-exon	FALSE	canonical	3	609	junction_6	38.2117637500402	1588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTGCTGCTTTGACTT	NA	False	NA	-4	True	ATTAAA	-14	NA	106107170	106090179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_106091843_106092836_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106106974
ENSMUSG00000078622.9_106091293_106107634_1	chr11	-	2036	13	NNC	ENSMUSG00000078622.9	novel	5193	13	NA	NA	-464	312	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_12	175.732336713158	511	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGAACGTAGAACACTATG	NA	False	NA	-11	True	AATAAA	-44	NA	106107634	106091292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_106091843_106092836_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106107536
ENSMUSG00000078622.9_106091305_106107170_1	chr11	-	2122	13	FSM	ENSMUSG00000078622.9	ENSMUST00000002043.10	5193	13	0	3071	0	300	multi-exon	FALSE	canonical	3	609	junction_6	38.2117637500402	745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGTGAAAAAAGTGGAACG	NA	False	NA	-23	True	AATAAA	-32	NA	106107170	106091304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_106091843_106092836_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106106974
ENSMUSG00000078630.9_101545615_101548745_1	chr7	-	771	6	NIC	ENSMUSG00000078630.9	novel	2796	4	NA	NA	4247	1962	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	436	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGGTCTGAGCGGAAGAAC	2046	False	NA	NA	False	NA	NA	NA	101548745	101545614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_101545658_101546939_101546995_101547148_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUSG00000078630.9_101545615_101548745_2	chr7	-	711	5	NIC	ENSMUSG00000078630.9	novel	2796	4	NA	NA	4247	1962	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	368	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGGTCTGAGCGGAAGAAC	2046	False	NA	NA	False	NA	NA	NA	101548745	101545614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_101545658_101547153_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUSG00000078630.9_101545615_101548745_3	chr7	-	801	6	NIC	ENSMUSG00000078630.9	novel	2796	4	NA	NA	4247	1962	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3446	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGGTCTGAGCGGAAGAAC	2046	False	NA	NA	False	NA	NA	NA	101548745	101545614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_101545658_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUSG00000078630.9_101545615_101548745_4	chr7	-	872	4	NIC	ENSMUSG00000078630.9	novel	2796	4	NA	NA	4247	1962	intron_retention	FALSE	non_canonical	0	0	junction_1	0	371	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGGTCTGAGCGGAAGAAC	2046	False	NA	NA	False	NA	NA	NA	101548745	101545614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_101545658_101547148_101547279_101547760_101547821_101548106
ENSMUSG00000078630.9_101545997_101548745_1	chr7	-	782	6	NNC	ENSMUSG00000078630.9	novel	2796	4	NA	NA	4247	1580	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	766	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAATGACTGCGAGATTGA	2046	False	NA	NA	False	ACTAAA	-36	NA	101548745	101545996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_101546021_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUSG00000078632.5_103341535_103342021_1	chr11	-	335	3	ISM	ENSMUSG00000078632.5	ENSMUST00000153273.3	9931	14	53402	0	53402	0	3prime_fragment	FALSE	canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGTGAGTATCAAAGTC	2664	False	NA	NA	False	AATAAA	-13	NA	103342021	103341534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_103341636_103341713_103341860_103341933
ENSMUSG00000078640.10_102467224_102470156_1	chr11	-	687	3	FSM	ENSMUSG00000078640.10	ENSMUST00000107081.8	818	3	131	0	-55	0	multi-exon	FALSE	canonical	2	9	junction_2	3.5	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTCTTTTTTTTT	-2	True	NA	NA	False	NA	NA	NA	102470156	102467223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102467624_102469575_102469722_102470015
ENSMUSG00000078640.10_102467224_102470287_1	chr11	-	847	3	NIC	ENSMUSG00000078640.10	novel	818	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	3	junction_2	6.5	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTCTTTTTTTTT	8238	False	NA	NA	False	NA	NA	NA	102470287	102467223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_102467624_102469575_102469722_102469986
ENSMUSG00000078652.10_101207039_101212925_2	chr11	+	1226	11	FSM	ENSMUSG00000078652.10	ENSMUST00000019470.14	2664	11	0	1438	0	0	multi-exon	FALSE	canonical	3	1173	junction_6	119.560068584791	957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCTAATTTCTGGAGAAC	NA	False	NA	96	True	NA	NA	NA	101207038	101212925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
ENSMUSG00000078652.10_101207039_101212925_3	chr11	+	1121	10	NIC	ENSMUSG00000078652.10	novel	2664	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	51	junction_3	427.085471539363	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCTAATTTCTGGAGAAC	NA	False	NA	96	True	NA	NA	NA	101207038	101212925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_101207315_101208006_101208040_101208154_101208218_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
ENSMUSG00000078652.10_101207039_101214363_2	chr11	+	2559	10	NIC	ENSMUSG00000078652.10	novel	2664	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	51	junction_3	427.085471539363	879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGGTGCTGTACTCTG	NA	False	NA	34	True	ATTAAA	-35	NA	101207038	101214363	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_101207315_101208006_101208040_101208154_101208218_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
ENSMUSG00000078653.5_101186733_101193086_1	chr11	+	736	4	NIC	ENSMUSG00000078653.5	novel	2120	6	NA	NA	9852	5943	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGACTTCCGCCCAGGACC	5379	False	NA	NA	False	NA	NA	NA	101186732	101193086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_101187143_101189834_101189903_101192553_101192683_101192957
ENSMUSG00000078656.12_101144556_101148875_1	chr11	+	503	5	NIC	ENSMUSG00000078656.12	novel	615	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	608.541083247467	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTCTGTGACTCTTTA	NA	False	NA	1	True	AGTAAA	-17	NA	101144555	101148875	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_101144634_101144856_101145003_101145768_101145823_101147703_101147780_101148726
ENSMUSG00000078656.12_101144556_101150149_1	chr11	+	857	6	FSM	ENSMUSG00000078656.12	ENSMUST00000042477.13	1106	6	23	226	0	0	multi-exon	FALSE	canonical	3	1136	junction_3	45.4682306671372	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACCCACCTACATGCGCC	NA	False	NA	NA	False	TATAAA	-35	NA	101144555	101150149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149735
ENSMUSG00000078656.12_101144556_101150372_1	chr11	+	1080	7	NNC	ENSMUSG00000001240.14	novel	1478	8	NA	NA	6637	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	578.015762953072	8073	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGGCCTGTTACTACTG	NA	False	NA	17	True	ATTAAA	-14	NA	101144555	101150372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101148228_101148230_101149736
ENSMUSG00000078656.12_101144556_101150372_2	chr11	+	1059	5	NNC	ENSMUSG00000078656.12	novel	876	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	538.20738335701	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGGCCTGTTACTACTG	NA	False	NA	17	True	ATTAAA	-14	NA	101144555	101150372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_101144634_101144856_101145003_101146801_101146924_101147703_101147780_101149735
ENSMUSG00000078656.12_101144556_101150372_3	chr11	+	991	5	FSM	ENSMUSG00000078656.12	ENSMUST00000144306.9	361	5	0	-630	0	1	multi-exon	FALSE	canonical	3	19	junction_3	527.253733983933	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGGCCTGTTACTACTG	NA	False	NA	17	True	ATTAAA	-14	NA	101144555	101150372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101147703_101147780_101149735
ENSMUSG00000078656.12_101144556_101150372_4	chr11	+	1069	6	NNC	ENSMUSG00000078656.12	novel	1106	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	497.528129858001	7140	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGGCCTGTTACTACTG	NA	False	NA	17	True	ATTAAA	-14	NA	101144555	101150372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_101144634_101144856_101145003_101145768_101145823_101146845_101146924_101147703_101147780_101149735
ENSMUSG00000078656.12_101144556_101150372_5	chr11	+	1073	6	NNC	ENSMUSG00000078656.12	novel	1106	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	488.271072253927	6685	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGGCCTGTTACTACTG	NA	False	NA	17	True	ATTAAA	-14	NA	101144555	101150372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_101144634_101144863_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149735
ENSMUSG00000078684.9_88730928_88733286_1	chr3	+	952	3	ISM	ENSMUSG00000078684.9	ENSMUST00000135913.2	6190	19	48405	-392	48405	392	3prime_fragment	FALSE	canonical	3	272	junction_2	41	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGGTCTGGTTTTGTTT	NA	False	NA	15	True	AATATA	-16	NA	88730927	88733286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_88731105_88731656_88731842_88732696
ENSMUSG00000078689.9_59964294_60007274_1	chr4	+	796	7	FSM	ENSMUSG00000078689.9	ENSMUST00000107521.8	642	7	0	-154	0	0	multi-exon	FALSE	canonical	3	12	junction_2	4.92442890089805	229	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTCTCTGTGTCCAGA	16	False	NA	NA	False	AATAAA	-21	NA	59964293	60007274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_59964368_60003977_60004112_60004813_60004888_60005471_60005583_60005921_60006024_60006188_60006235_60007019
ENSMUSG00000078695.9_97576652_97579447_1	chr11	+	864	3	FSM	ENSMUSG00000078695.9	ENSMUST00000107583.3	737	3	-127	0	0	0	multi-exon	FALSE	canonical	3	940	junction_1	75.5	8001	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2325	False	NA	-1	True	AATAAA	-21	NA	97576651	97579447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_97577042_97577326_97577447_97579093
ENSMUSG00000078695.9_97576779_97579447_1	chr11	+	718	3	NNC	ENSMUSG00000078695.9	novel	737	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	62	junction_1	514.5	6807	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2452	False	NA	-1	True	AATAAA	-21	NA	97576778	97579447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97577042_97577345_97577447_97579093
ENSMUSG00000078700.11_96798252_96807240_1	chr11	+	2168	14	NIC	ENSMUSG00000078700.11	novel	3542	7	NA	NA	-8844	-37052	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1504	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACCCCGGCCCAGCCTA	9007	False	NA	NA	False	NA	NA	NA	96798251	96807240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
ENSMUSG00000078700.11_96798642_96807240_1	chr11	+	1757	14	NNC	ENSMUSG00000078700.11	novel	3542	7	NA	NA	-8454	-37052	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	103	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACCCCGGCCCAGCCTA	9397	False	NA	NA	False	NA	NA	NA	96798641	96807240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_96798949_96799055_96799228_96799539_96799725_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
ENSMUSG00000078700.11_96798642_96807240_2	chr11	+	1778	14	NIC	ENSMUSG00000078700.11	novel	3542	7	NA	NA	-8454	-37052	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1229	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACCCCGGCCCAGCCTA	9397	False	NA	NA	False	NA	NA	NA	96798641	96807240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
ENSMUSG00000078700.11_96798642_96807336_1	chr11	+	1874	14	NIC	ENSMUSG00000078700.11	novel	3542	7	NA	NA	-8454	-36956	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1459	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGGAGCCAATCCAAGACC	9397	False	NA	NA	False	NA	NA	NA	96798641	96807336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
ENSMUSG00000078706.5_96142046_96153021_1	chr11	+	1178	2	FSM	ENSMUSG00000078706.5	ENSMUST00000150490.3	3257	2	-424	2503	115	502	multi-exon	FALSE	canonical	3	27	junction_1	0	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGAGATGGACATGTTTT	8390	False	NA	NA	False	NA	NA	NA	96142045	96153021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_96142640_96152437
ENSMUSG00000078706.5_96142470_96160068_1	chr11	+	699	4	NNC	ENSMUSG00000078706.5	novel	1172	3	NA	NA	0	4374	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	2.82842712474619	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCACATGTCCTTTTGGGC	8814	False	NA	4	True	AATAAA	-17	NA	96142469	96160068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_96142640_96154999_96155212_96155549_96155672_96159873
ENSMUSG00000078762.11_30353141_30364385_1	chr7	-	2140	17	NNC	ENSMUSG00000078762.11	novel	2187	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	60.1308144277957	320	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGCACTGCCCAGTTTT	NA	False	NA	-9	True	AATAAA	-10	NA	30364385	30353140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_30353481_30353594_30353728_30356373_30356504_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358091_30358277_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361445_30362647_30362711_30364255
ENSMUSG00000078765.12_30262754_30264785_1	chr7	+	784	7	NIC	ENSMUSG00000078765.12	novel	860	8	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	54	junction_6	255.018572308415	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	NA	False	NA	31	True	AATAAA	-19	NA	30262753	30264785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_30262834_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264519
ENSMUSG00000078765.12_30262754_30264785_2	chr7	+	750	7	NIC	ENSMUSG00000078765.12	novel	781	7	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	54	junction_6	252.092575588149	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	NA	False	NA	31	True	AATAAA	-19	NA	30262753	30264785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264519
ENSMUSG00000078765.12_30262754_30264785_3	chr7	+	855	8	NIC	ENSMUSG00000078765.12	novel	860	8	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	31	junction_1	195.900745380962	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	NA	False	NA	31	True	AATAAA	-19	NA	30262753	30264785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_30262834_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUSG00000078765.12_30262754_30264785_4	chr7	+	1052	7	NIC	ENSMUSG00000078765.12	novel	860	8	NA	NA	0	1	intron_retention	FALSE	canonical	3	61	junction_1	200.697464414033	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	NA	False	NA	31	True	AATAAA	-19	NA	30262753	30264785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_30262834_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30264033_30264127_30264224_30264519
ENSMUSG00000078765.12_30262754_30264785_5	chr7	+	846	8	NIC	ENSMUSG00000078765.12	novel	884	8	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	74	junction_1	181.681713163321	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	NA	False	NA	31	True	AATAAA	-19	NA	30262753	30264785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUSG00000078765.12_30262754_30264785_6	chr7	+	796	8	FSM	ENSMUSG00000078765.12	ENSMUST00000163330.3	583	8	22	-235	0	1	multi-exon	FALSE	canonical	3	25	junction_1	197.894529732277	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	NA	False	NA	31	True	AATAAA	-19	NA	30262753	30264785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30262775_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUSG00000078765.12_30262754_30264785_7	chr7	+	1043	7	NIC	ENSMUSG00000078765.12	novel	884	8	NA	NA	0	1	intron_retention	FALSE	canonical	3	411	junction_1	82.4386977631797	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	NA	False	NA	31	True	AATAAA	-19	NA	30262753	30264785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30264033_30264127_30264224_30264519
ENSMUSG00000078765.12_30262754_30264785_8	chr7	+	1018	7	NIC	ENSMUSG00000078765.12	novel	500	7	NA	NA	0	1	intron_retention	FALSE	canonical	3	74	junction_1	196.028909432597	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	NA	False	NA	31	True	AATAAA	-19	NA	30262753	30264785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30264033_30264127_30264224_30264519
ENSMUSG00000078765.12_30262754_30264785_9	chr7	+	821	8	NIC	ENSMUSG00000078765.12	novel	884	8	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	193.245851659676	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	NA	False	NA	31	True	AATAAA	-19	NA	30262753	30264785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_30262775_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUSG00000078765.12_30263251_30264785_1	chr7	+	816	6	FSM	ENSMUSG00000078765.12	ENSMUST00000165524.9	582	6	-53	-181	0	1	multi-exon	FALSE	canonical	3	472	junction_3	63.1905056159547	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	74	False	NA	31	True	AATAAA	-19	NA	30263250	30264785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUSG00000078773.12_11558922_11580255_1	chr4	+	1977	4	FSM	ENSMUSG00000078773.12_ENSMUSG00000094595.2	ENSMUST00000108306.9	652	4	-27	-1298	0	1298	multi-exon	FALSE	canonical	3	39	junction_3	82.7056359761668	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGTAAAGCTCTGAGGA	-25	True	NA	NA	False	NA	NA	NA	11558921	11580255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11578633
ENSMUSG00000078773.12_11558922_11601970_1	chr4	+	1632	8	ISM	ENSMUSG00000078773.12	ENSMUST00000070755.13	2870	15	-50	13835	0	-4174	5prime_fragment	FALSE	canonical	3	154	junction_7	24.0458745241809	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAGCATGAGGTTGACAG	-25	True	NA	NA	False	AATAAA	-16	NA	11558921	11601970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550
ENSMUSG00000078779.5_27538032_27552904_1	chr7	+	478	5	FSM	ENSMUSG00000078779.5	ENSMUST00000205701.2	3437	5	0	2959	0	-1607	multi-exon	FALSE	canonical	3	101	junction_4	40.2639727299729	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGACCCCAAGGGCTCC	408	False	NA	NA	False	CATAAA	-15	NA	27538031	27552904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27538135_27542259_27542313_27543709_27543837_27545828_27545928_27552808
ENSMUSG00000078784.9_14671349_14676327_1	chr3	-	421	4	NNC	ENSMUSG00000078784.9	novel	1174	3	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2391.52034395603	29373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676327	14671348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_14671478_14672236_14672354_14674600_14674718_14676269
ENSMUSG00000078784.9_14671349_14676327_2	chr3	-	402	4	NNC	ENSMUSG00000078784.9	novel	559	4	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2523.3311756926	18765	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676327	14671348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_14671469_14672236_14672354_14674600_14674718_14676279
ENSMUSG00000078784.9_14671349_14676327_3	chr3	-	400	4	NNC	ENSMUSG00000078784.9	novel	435	4	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2523.3311756926	20028	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676327	14671348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_14671469_14672236_14672354_14674600_14674706_14676269
ENSMUSG00000078784.9_14671349_14676327_4	chr3	-	1079	4	NNC	ENSMUSG00000078784.9	novel	1174	3	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_1	2375.53451295118	658	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676327	14671348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_14672136_14672236_14672354_14674600_14674718_14676269
ENSMUSG00000078784.9_14671349_14676327_5	chr3	-	538	5	NNC	ENSMUSG00000078784.9	novel	435	4	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	2523.17819178511	1475	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676327	14671348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_14671469_14672009_14672136_14672236_14672354_14674600_14674718_14676269
ENSMUSG00000078784.9_14673917_14676327_1	chr3	-	859	2	FSM	ENSMUSG00000078784.9	ENSMUST00000190064.2	508	2	-24	-327	-6	327	multi-exon	FALSE	canonical	3	4849	junction_1	0	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACATG	NA	False	NA	NA	False	NA	NA	NA	14676327	14673916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_14674718_14676269
ENSMUSG00000078786.10_26886432_26895449_1	chr7	+	1110	7	NNC	ENSMUSG00000078786.10	novel	1748	7	NA	NA	-8774	-8137	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	219	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGCTACGCTGCACAGACA	NA	False	NA	NA	False	NA	NA	NA	26886431	26895449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892460_26894868_26894982_26895415
ENSMUSG00000078786.10_26886432_26895578_1	chr7	+	1238	7	NNC	ENSMUSG00000078786.10	novel	1748	7	NA	NA	-8774	-8008	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2501	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGGGGTCCCGCCCCCTG	NA	False	NA	NA	False	NA	NA	NA	26886431	26895578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_26886790_26888290_26888380_26888783_26888958_26891028_26891197_26892294_26892468_26894868_26894982_26895415
ENSMUSG00000078786.10_26886432_26895578_2	chr7	+	1223	7	NNC	ENSMUSG00000078786.10	novel	1748	7	NA	NA	-8774	-8008	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	918	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGGGGTCCCGCCCCCTG	NA	False	NA	NA	False	NA	NA	NA	26886431	26895578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_26886790_26888290_26888380_26888783_26888958_26891052_26891206_26892294_26892468_26894868_26894982_26895415
ENSMUSG00000078786.10_26886432_26895578_3	chr7	+	1252	7	NNC	ENSMUSG00000078786.10	novel	1748	7	NA	NA	-8774	-8008	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5230	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGGGGTCCCGCCCCCTG	NA	False	NA	NA	False	NA	NA	NA	26886431	26895578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892460_26894855_26894982_26895415
ENSMUSG00000078786.10_26886432_26895578_4	chr7	+	1239	7	NNC	ENSMUSG00000078786.10	novel	1748	7	NA	NA	-8774	-8008	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3252	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGGGGTCCCGCCCCCTG	NA	False	NA	NA	False	NA	NA	NA	26886431	26895578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892460_26894868_26894982_26895415
ENSMUSG00000078786.10_26886432_26895578_5	chr7	+	1232	7	NNC	ENSMUSG00000078786.10	novel	1748	7	NA	NA	-8774	-8008	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1561	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGGGGTCCCGCCCCCTG	NA	False	NA	NA	False	NA	NA	NA	26886431	26895578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_26886790_26888290_26888380_26888783_26888958_26891043_26891206_26892294_26892468_26894868_26894982_26895415
ENSMUSG00000078787.10_26858084_26866227_1	chr7	+	1283	6	NNC	ENSMUSG00000078787.10	novel	1631	9	NA	NA	3577	8134	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGACAGCGGCCCGGCCGA	NA	False	NA	NA	False	NA	NA	NA	26858083	26866227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864867_26865154_26866108
ENSMUSG00000078789.10_75068522_75069631_1	chr11	-	868	2	FSM	ENSMUSG00000038268.5	ENSMUST00000123489.2	745	2	-18	-105	-18	105	multi-exon	FALSE	canonical	3	10	junction_1	0	608	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTTCTCCTGCTGCCCC	1667	False	NA	0	True	AATAAA	-21	NA	75069631	75068521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_75069214_75069455
ENSMUSG00000078812.11_69807546_69812094_1	chr11	-	1319	7	FSM	ENSMUSG00000078812.11	ENSMUST00000043419.10	1437	7	118	0	-78	0	multi-exon	FALSE	canonical	3	627	junction_6	9644.56352477049	13866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6389	False	NA	-15	True	AATAAA	-20	NA	69812094	69807545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811988
ENSMUSG00000078812.11_69807546_69812094_2	chr11	-	1225	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	118	0	-78	0	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	45011	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6389	False	NA	-15	True	AATAAA	-20	NA	69812094	69807545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
ENSMUSG00000078813.4_3663097_3668469_1	chr7	-	1852	4	FSM	ENSMUSG00000078813.4	ENSMUST00000019878.8	2222	4	370	0	370	0	multi-exon	FALSE	canonical	3	158	junction_3	1.69967317119759	1293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAGGCACCATCAATACT	9073	False	NA	-19	True	AAAACA	-45	NA	3668469	3663096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_3664360_3665769_3666024_3666680_3666861_3668314
ENSMUSG00000078813.4_3664057_3668469_1	chr7	-	892	4	FSM	ENSMUSG00000078813.4	ENSMUST00000019878.8	2222	4	370	960	370	-960	multi-exon	FALSE	canonical	3	158	junction_3	1.69967317119759	1114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGTTTACCAAAAAATGTC	9073	False	NA	NA	False	TATAAA	-35	NA	3668469	3664056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_3664360_3665769_3666024_3666680_3666861_3668314
ENSMUSG00000078861.9_177696680_177720255_1	chr2	-	555	3	NNC	ENSMUSG00000078861.9	novel	1572	2	NA	NA	-7	12808	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	48	418	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACCTGGAAAGTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	177720255	177696679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_177697003_177711615_177711743_177720150
ENSMUSG00000078861.9_177696680_177720255_2	chr2	-	616	4	NNC	ENSMUSG00000078861.9	novel	1372	3	NA	NA	-7	12808	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	39.4743235815666	555	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACCTGGAAAGTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	177720255	177696679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_177697003_177711347_177711409_177711615_177711743_177720150
ENSMUSG00000078861.9_177710082_177720255_1	chr2	-	405	4	FSM	ENSMUSG00000078861.9	ENSMUST00000108924.9	962	4	-37	594	-7	187	multi-exon	FALSE	canonical	3	15	junction_1	38.724095283887	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177720255	177710081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_177710194_177711347_177711409_177711615_177711743_177720150
ENSMUSG00000078861.9_177710485_177720255_1	chr2	-	1156	3	FSM	ENSMUSG00000078861.9	ENSMUST00000108923.2	1372	3	14	202	-7	-202	multi-exon	FALSE	canonical	3	51	junction_1	29	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTGAGTTCTTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	177720255	177710484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_177711409_177711615_177711743_177720150
ENSMUSG00000078864.11_177190020_177411491_4	chr2	+	548	6	Fusion	ENSMUSG00000094786.2_ENSMUSG00000078864.11	novel	1074	3	NA	NA	12	-264	multi-exon	FALSE	canonical	3	31	junction_2	89.8590006621485	693	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177190019	177411491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_+_177190111_177193535_177193591_177405994_177406097_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078864.11_177401081_177411491_1	chr2	+	621	7	NNC	ENSMUSG00000078864.11	novel	744	6	NA	NA	0	-264	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_3	130.74784893068	314	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177401080	177411491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_177401169_177404638_177404694_177405627_177405769_177409531_177409569_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078864.11_177401081_177411491_2	chr2	+	388	4	NIC	ENSMUSG00000078864.11	novel	744	6	NA	NA	0	-264	combination_of_known_splicesites	FALSE	canonical	3	35	junction_1	100.353818506766	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177401080	177411491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_177401169_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078864.11_177401081_177411491_3	chr2	+	584	6	NNC	ENSMUSG00000078864.11	novel	744	6	NA	NA	0	-264	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_3	133.779819105873	216	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177401080	177411491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_177401169_177404638_177404694_177405627_177405769_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078864.11_177401081_177411491_4	chr2	+	443	5	NIC	ENSMUSG00000078864.11	novel	744	6	NA	NA	0	-264	combination_of_known_junctions	FALSE	canonical	3	49	junction_2	122.051218756717	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177401080	177411491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_177401169_177404638_177404694_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078864.11_177401081_177411491_5	chr2	+	582	7	NNC	ENSMUSG00000078864.11	novel	744	6	NA	NA	0	-264	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_3	121.969941652305	1240	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177401080	177411491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_177401169_177404638_177404694_177405994_177406097_177409531_177409569_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078864.11_177401081_177411491_6	chr2	+	545	6	NNC	ENSMUSG00000078864.11	novel	744	6	NA	NA	0	-264	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_3	118.732640836461	1006	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177401080	177411491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_177401169_177404638_177404694_177405994_177406097_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078864.11_177401081_177411491_7	chr2	+	480	6	FSM	ENSMUSG00000078864.11	ENSMUST00000148388.2	744	6	0	264	0	-264	multi-exon	FALSE	canonical	3	97	junction_4	86.0497530501977	1998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177401080	177411491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_177401169_177404638_177404694_177409531_177409569_177409836_177409964_177410168_177410230_177411379
ENSMUSG00000078865.9_177261975_177270011_1	chr2	-	389	4	FSM	ENSMUSG00000078865.9	ENSMUST00000108945.8	1348	4	-19	978	-8	-978	multi-exon	FALSE	canonical	3	688	junction_1	226.200992236747	6934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	2329	False	NA	NA	False	NA	NA	NA	177270011	177261974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_177262087_177263226_177263288_177263479_177263607_177269922
ENSMUSG00000078865.9_177261975_177270011_2	chr2	-	444	5	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-8	-978	combination_of_known_junctions	FALSE	canonical	3	253	junction_4	344.203700590217	7867	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	2329	False	NA	NA	False	NA	NA	NA	177270011	177261974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_177262087_177263226_177263288_177263479_177263607_177266761_177266817_177269922
ENSMUSG00000078865.9_177261975_177270011_3	chr2	-	262	3	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-8	-978	combination_of_known_splicesites	FALSE	canonical	3	155	junction_2	266.5	1287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	2329	False	NA	NA	False	NA	NA	NA	177270011	177261974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_177262087_177263226_177263288_177269922
ENSMUSG00000078865.9_177261975_177275487_1	chr2	-	391	4	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-5484	-978	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	500.198182945742	1560	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177275487	177261974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_177262087_177263226_177263288_177263479_177263607_177275396
ENSMUSG00000078865.9_177261975_177275487_3	chr2	-	446	5	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-5484	-978	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	437.731652956466	3423	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177275487	177261974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_177262087_177263226_177263288_177263479_177263607_177266761_177266817_177275396
ENSMUSG00000078866.11_177156526_177165563_1	chr2	+	396	3	ISM	ENSMUSG00000078866.11	ENSMUST00000108952.4	1569	4	-113	2433	0	-2433	5prime_fragment	FALSE	canonical	3	64	junction_2	12	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGCTTTCAGTTATGGA	NA	False	NA	NA	False	NA	NA	NA	177156525	177165563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_177156642_177165078_177165206_177165410
ENSMUSG00000078866.11_177156526_177165622_2	chr2	+	455	3	ISM	ENSMUSG00000078866.11	ENSMUST00000108952.4	1569	4	-113	2374	0	-2374	5prime_fragment	FALSE	canonical	3	64	junction_2	12	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGTAATTATTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	177156525	177165622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_177156642_177165078_177165206_177165410
ENSMUSG00000078866.11_177156526_177166413_1	chr2	+	1246	3	ISM	ENSMUSG00000078866.11	ENSMUST00000108952.4	1569	4	-113	1583	0	-1583	5prime_fragment	FALSE	canonical	3	64	junction_2	12	643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTTCCCATTTCATGTA	NA	False	NA	NA	False	NA	NA	NA	177156525	177166413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_177156642_177165078_177165206_177165410
ENSMUSG00000078866.11_177156526_177166732_1	chr2	+	418	4	FSM	ENSMUSG00000078866.11	ENSMUST00000108952.4	1569	4	-113	1264	0	-1264	multi-exon	FALSE	canonical	3	64	junction_2	23.3666428910958	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGAGTGTAACCAATGTG	NA	False	NA	NA	False	NA	NA	NA	177156525	177166732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_177156642_177165078_177165206_177165410_177165472_177166618
ENSMUSG00000078866.11_177156526_177200358_1	chr2	+	659	7	Fusion	ENSMUSG00000094786.2_ENSMUSG00000078866.11	novel	794	4	NA	NA	0	-304	multi-exon	FALSE	canonical	1	2	junction_3	80.5460530793823	798	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	17	True	NA	NA	NA	177156525	177200358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_+_177156642_177165078_177165206_177165410_177165472_177193535_177193591_177198701_177198829_177199035_177199097_177200246
ENSMUSG00000078867.10_177079694_177090112_1	chr2	-	430	5	NIC	ENSMUSG00000078867.10	novel	588	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_4	115.882483577114	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	177090112	177079693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_177079803_177080953_177081015_177081219_177081347_177081614_177081652_177090016
ENSMUSG00000078867.10_177079694_177090112_2	chr2	-	485	6	NIC	ENSMUSG00000078867.10	novel	588	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	51	junction_2	99.4633600880244	2257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	177090112	177079693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_177079803_177080953_177081015_177081219_177081347_177081614_177081652_177086489_177086545_177090016
ENSMUSG00000078867.10_177079694_177251342_1	chr2	-	503	4	NNC	ENSMUSG00000078867.10	novel	588	7	NA	NA	-161229	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	105.54725113532	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	177251342	177079693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_177079803_177080953_177081015_177081219_177081347_177251136
ENSMUSG00000078868.4_177007591_177016172_2	chr2	-	348	4	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-72	-1278	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	17.5941909605289	232	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177016172	177007590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_177007703_177008856_177008918_177009124_177009225_177016097
ENSMUSG00000078868.4_177007591_177021619_1	chr2	-	390	4	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-5519	-1278	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	18.4451137763426	434	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177021619	177007590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_177007703_177008856_177008918_177009124_177009252_177021529
ENSMUSG00000078869.3_176802701_176964135_1	chr2	-	604	4	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5306	153746	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_1	214.097070403954	996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATTTAGGTCGTTTCTT	NA	False	NA	-4	True	AATAAA	-17	NA	176964135	176802700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_176803028_176958542_176958604_176958795_176958923_176964046
ENSMUSG00000078869.3_176802701_176964135_2	chr2	-	477	3	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5306	153746	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_1	13	395	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATTTAGGTCGTTTCTT	NA	False	NA	-4	True	AATAAA	-17	NA	176964135	176802700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_176803028_176958542_176958604_176964046
ENSMUSG00000078869.3_176957290_176964135_1	chr2	-	262	3	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5306	-843	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_2	218	1041	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCATGACTGTAACCAATG	NA	False	NA	-38	True	NA	NA	NA	176964135	176957289	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_176957402_176958542_176958604_176964046
ENSMUSG00000078869.3_176957290_176964135_2	chr2	-	389	4	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5306	-843	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_3	127.14908135291	4120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCATGACTGTAACCAATG	NA	False	NA	-38	True	NA	NA	NA	176964135	176957289	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_176957402_176958542_176958604_176958795_176958923_176964046
ENSMUSG00000078869.3_176957475_176964135_1	chr2	-	1345	3	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5306	-1028	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_2	147.5	2299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCATACAGATAAAAAGACT	NA	False	NA	-26	True	NA	NA	NA	176964135	176957474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_176958604_176958795_176958923_176964046
ENSMUSG00000078870.10_176885960_176898223_1	chr2	-	391	4	NIC	ENSMUSG00000078870.10	novel	1113	4	NA	NA	-9	682	combination_of_known_splicesites	FALSE	canonical	2	8	junction_1	147.159777113177	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	176898223	176885959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_176886072_176887228_176887290_176887494_176887622_176898132
ENSMUSG00000078870.10_176886278_176898223_2	chr2	-	1285	4	FSM	ENSMUSG00000078870.10	ENSMUST00000108964.2	912	4	-9	-364	-9	364	multi-exon	FALSE	canonical	3	79	junction_3	114.822568435923	1318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTTCCCATTTCATATA	NA	False	NA	NA	False	NA	NA	NA	176898223	176886277	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_176887290_176887494_176887622_176894619_176894675_176898132
ENSMUSG00000078870.10_176887077_176898223_1	chr2	-	486	4	FSM	ENSMUSG00000078870.10	ENSMUST00000108964.2	912	4	-9	435	-9	-435	multi-exon	FALSE	canonical	3	79	junction_3	114.822568435923	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATGTAACTGTTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	176898223	176887076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_176887290_176887494_176887622_176894619_176894675_176898132
ENSMUSG00000078870.10_176887077_176969662_1	chr2	-	541	4	NNC	ENSMUSG00000078870.10	novel	912	4	NA	NA	-71448	-435	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	137.950071483208	1134	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATGTAACTGTTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	176969662	176887076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_176887290_176887494_176887622_176894619_176894675_176969516
ENSMUSG00000078872.10_176766113_176776580_1	chr2	+	378	3	ISM	ENSMUSG00000078872.10	ENSMUST00000108970.9	948	4	0	2247	0	147	5prime_fragment	FALSE	canonical	3	143	junction_2	82	126	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATGTAATTTTTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	176766112	176776580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_176766152_176776035_176776163_176776368
ENSMUSG00000078872.10_176766113_176778017_1	chr2	+	1815	3	ISM	ENSMUSG00000078872.10	ENSMUST00000108970.9	948	4	0	810	0	-810	5prime_fragment	FALSE	canonical	3	143	junction_2	82	434	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAAAATTTAAAACAATTCA	NA	False	NA	NA	False	NA	NA	NA	176766112	176778017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_176766152_176776035_176776163_176776368
ENSMUSG00000078875.11_176522844_176702817_1	chr2	+	1285	4	Fusion	ENSMUSG00000078875.11_ENSMUSG00000078876.11	novel	1749	4	NA	NA	-89	40	intron_retention	FALSE	canonical	0	0	junction_1	66.8048567762022	618	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTTCCCATTTCATATA	1823	False	NA	NA	False	NA	NA	NA	176522843	176702817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_+_176522936_176696293_176696349_176701473_176701601_176701806
ENSMUSG00000078875.11_176692749_176723277_1	chr2	+	403	5	NNC	ENSMUSG00000078875.11	novel	683	5	NA	NA	0	18697	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	57.9007771968563	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATTTTGGTCATTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	176692748	176723277	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_176692840_176696293_176696349_176701473_176701601_176701806_176701868_176723208
ENSMUSG00000078875.11_176692749_176813051_1	chr2	+	547	6	Fusion	ENSMUSG00000078875.11_ENSMUSG00000078872.10	novel	683	5	NA	NA	0	33911	multi-exon	FALSE	canonical	0	0	junction_3	27.5274408545364	105	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATGACTGTAATTCCTC	NA	False	NA	NA	False	NA	NA	NA	176692748	176813051	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_+_176692840_176696293_176696349_176697651_176697753_176701473_176701601_176776368_176776430_176812939
ENSMUSG00000078877.12_176490405_176500814_1	chr2	+	462	5	NIC	ENSMUSG00000078877.12	novel	1213	4	NA	NA	0	403	combination_of_known_junctions	FALSE	canonical	3	47	junction_2	16.6038399173203	728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	176490404	176500814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_176490512_176493973_176494029_176499154_176499282_176499487_176499549_176500702
ENSMUSG00000078878.10_176400121_176411294_1	chr2	+	492	4	FSM	ENSMUSG00000078878.10	ENSMUST00000108980.9	1167	4	-27	702	0	-702	multi-exon	FALSE	canonical	3	21	junction_2	71.7696933871734	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATGTAACTGTTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	176400120	176411294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_176400218_176403673_176403729_176410749_176410877_176411081
ENSMUSG00000078878.10_176400121_176411657_1	chr2	+	855	4	FSM	ENSMUSG00000078878.10	ENSMUST00000108980.9	1167	4	-27	339	0	-339	multi-exon	FALSE	canonical	3	21	junction_2	71.7696933871734	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAATTTTCACTTGTTA	NA	False	NA	NA	False	NA	NA	NA	176400120	176411657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_176400218_176403673_176403729_176410749_176410877_176411081
ENSMUSG00000078886.13_175661071_175769428_1	chr2	+	464	5	Fusion	ENSMUSG00000078887.11_ENSMUSG00000078886.13	novel	1497	4	NA	NA	-8	0	multi-exon	FALSE	canonical	3	28	junction_2	105.698864705351	591	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	175661070	175769428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_+_175661175_175760682_175760738_175767761_175767889_175768093_175768155_175769311
ENSMUSG00000078886.13_175757124_175769428_1	chr2	+	464	5	NIC	ENSMUSG00000078886.13	novel	1621	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	104.515549082421	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	175757123	175769428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_175757228_175760682_175760738_175767761_175767889_175768093_175768155_175769311
ENSMUSG00000078887.11_175661079_175670562_1	chr2	+	491	4	FSM	ENSMUSG00000078887.11	ENSMUST00000109011.8	1445	4	67	887	0	-887	multi-exon	FALSE	canonical	3	65	junction_2	81.1432204329001	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATGTAACTGTTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	175661078	175670562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_175661175_175664841_175664897_175670021_175670149_175670349
ENSMUSG00000078887.11_175661079_175671449_1	chr2	+	1480	5	ISM	ENSMUSG00000078887.11	ENSMUST00000147820.2	599	6	41	235	0	0	5prime_fragment	FALSE	canonical	3	14	junction_2	92.1259328310981	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACATTAGATTGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	175661078	175671449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_175661175_175664841_175664897_175666200_175666303_175670021_175670149_175670349
ENSMUSG00000078887.11_175661079_175671684_1	chr2	+	456	5	NIC	ENSMUSG00000078887.11	novel	599	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_4	79.6649232724164	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	175661078	175671684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_175661175_175664841_175664897_175670021_175670149_175670349_175670411_175671567
ENSMUSG00000078896.12_175311778_175320336_1	chr2	+	477	3	FSM	ENSMUSG00000078896.12	ENSMUST00000109042.10	1271	3	0	794	0	-794	multi-exon	FALSE	canonical	3	12	junction_2	42.5	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGTAATTATTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	175311777	175320336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_175311916_175319791_175319919_175320124
ENSMUSG00000078897.11_175266404_175277595_1	chr2	-	500	4	FSM	ENSMUSG00000078897.11	ENSMUST00000152941.2	1198	4	-20	718	-2	-214	multi-exon	FALSE	canonical	3	20	junction_2	107.953693776545	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATGTAACTGTTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	175277595	175266403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_175266617_175266821_175266949_175273972_175274028_175277490
ENSMUSG00000078899.10_175168484_175180029_1	chr2	-	862	4	ISM	ENSMUSG00000078899.10	ENSMUST00000121393.9	4402	5	-39	4736	-39	-1948	5prime_fragment	FALSE	canonical	3	21	junction_2	108.76988962433	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAATTTTCACTTGTTA	NA	False	NA	NA	False	NA	NA	NA	175180029	175168483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_175169060_175169264_175169392_175176415_175176471_175179925
ENSMUSG00000078899.10_175168847_175180029_1	chr2	-	499	4	ISM	ENSMUSG00000078899.10	ENSMUST00000121393.9	4402	5	-39	5099	-39	-2311	5prime_fragment	FALSE	canonical	3	21	junction_2	108.76988962433	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATGTAACTGTTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	175180029	175168846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_175169060_175169264_175169392_175176415_175176471_175179925
ENSMUSG00000078901.9_175116918_175126404_1	chr2	+	1188	3	FSM	ENSMUSG00000078901.9	ENSMUST00000109051.8	3382	3	0	2194	0	917	multi-exon	FALSE	canonical	3	19	junction_2	45	669	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTATAAATGTGAGCCAGA	NA	False	NA	NA	False	NA	NA	NA	175116917	175126404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_175116997_175125090_175125218_175125422
ENSMUSG00000078902.4_174905246_175017664_1	chr2	-	430	3	Fusion	ENSMUSG00000078902.4_ENSMUSG00000078905.9	novel	564	3	NA	NA	0	-147	multi-exon	FALSE	canonical	0	0	junction_1	19	486	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGATATGTAATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	175017664	174905245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_-_174905454_175013640_175013741_175017542
ENSMUSG00000078902.4_175008048_175017664_1	chr2	-	1215	4	NIC	ENSMUSG00000078902.4	novel	4516	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	56.1921307262463	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	-4	True	NA	NA	NA	175017664	175008047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_175008953_175013387_175013449_175013640_175013768_175017542
ENSMUSG00000078902.4_175011987_175017664_1	chr2	-	577	4	FSM	ENSMUSG00000078902.4	ENSMUST00000109054.3	4516	4	0	3939	0	-3939	multi-exon	FALSE	canonical	3	92	junction_1	16.3571255285137	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGGAGAGAAACCCTATG	NA	False	NA	NA	False	NA	NA	NA	175017664	175011986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_175012254_175013387_175013449_175013640_175013768_175017542
ENSMUSG00000078902.4_175012128_175017664_1	chr2	-	436	4	FSM	ENSMUSG00000078902.4	ENSMUST00000109054.3	4516	4	0	4080	0	-4080	multi-exon	FALSE	canonical	3	92	junction_1	16.3571255285137	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGTGGTAAAGCCTTTA	NA	False	NA	NA	False	NA	NA	NA	175017664	175012127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_175012254_175013387_175013449_175013640_175013768_175017542
ENSMUSG00000078902.4_175012536_175017664_1	chr2	-	1162	3	ISM	ENSMUSG00000078902.4	ENSMUST00000109054.3	4516	4	0	4488	0	-4488	5prime_fragment	FALSE	canonical	3	122	junction_2	4	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTCTTCCTGTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	175017664	175012535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_175013449_175013640_175013768_175017542
ENSMUSG00000078902.4_175013522_175017664_1	chr2	-	368	2	ISM	ENSMUSG00000078902.4	ENSMUST00000109054.3	4516	4	0	5474	0	-5474	5prime_fragment	FALSE	canonical	3	122	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATGAAGTTAGTAACTTAA	NA	False	NA	NA	False	NA	NA	NA	175017664	175013521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_175013768_175017542
ENSMUSG00000078903.11_175038069_175048678_1	chr2	-	562	6	FSM	ENSMUSG00000078903.11	ENSMUST00000109056.8	1956	6	32	1362	-9	666	multi-exon	FALSE	canonical	3	9	junction_4	88.9246872358852	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	175048678	175038068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_175038181_175039337_175039399_175039599_175039727_175043445_175043548_175044851_175044907_175048573
ENSMUSG00000078903.11_175038387_175048678_1	chr2	-	1299	4	FSM	ENSMUSG00000078903.11	ENSMUST00000109055.2	965	4	14	-348	-9	348	multi-exon	FALSE	canonical	3	66	junction_2	81.8141525382715	875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTTCCCATTTCATATA	NA	False	NA	NA	False	NA	NA	NA	175048678	175038386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_175039399_175039599_175039727_175044851_175044907_175048573
ENSMUSG00000078903.11_175039186_175048678_1	chr2	-	500	4	FSM	ENSMUSG00000078903.11	ENSMUST00000109055.2	965	4	14	451	-9	281	multi-exon	FALSE	canonical	3	66	junction_2	81.8141525382715	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATGTAACTGTTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	175048678	175039185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_175039399_175039599_175039727_175044851_175044907_175048573
ENSMUSG00000078905.9_174865159_174951897_1	chr2	-	445	5	Fusion	ENSMUSG00000085608.2_ENSMUSG00000078905.9_ENSMUSG00000081949.4	novel	564	3	NA	NA	-89	-12	multi-exon	FALSE	canonical	0	0	junction_4	28.0044639298809	343	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATGACTGTAATTCCTC	NA	False	NA	NA	False	NA	NA	NA	174951897	174865158	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_-_174865271_174905392_174905454_174905660_174905788_174909492_174909546_174951805
ENSMUSG00000078905.9_174903603_174909574_1	chr2	-	382	4	FSM	ENSMUSG00000078905.9	ENSMUST00000072895.10	625	4	-18	261	0	-261	multi-exon	FALSE	canonical	3	40	junction_2	18.263503375737	326	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	174909574	174903602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_174903715_174905392_174905454_174905660_174905788_174909492
ENSMUSG00000078905.9_174903603_174951897_1	chr2	-	392	4	Fusion	ENSMUSG00000078905.9_ENSMUSG00000081949.4	novel	625	4	NA	NA	-89	-261	multi-exon	FALSE	canonical	2	11	junction_3	30.0111090542597	1572	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	174951897	174903602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_-_174903715_174905392_174905454_174905660_174905788_174951805
ENSMUSG00000078906.10_174846549_174859862_1	chr2	+	1335	3	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	-5485	457	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	600.5	2061	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174846548	174859862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_174846644_174858430_174858558_174858749
ENSMUSG00000078906.10_174846549_174859862_2	chr2	+	1390	4	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	-5485	457	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	495.211963596286	3288	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174846548	174859862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_174846644_174855220_174855276_174858430_174858558_174858749
ENSMUSG00000078906.10_174852034_174859405_1	chr2	+	864	3	ISM	ENSMUSG00000078906.10	ENSMUST00000109070.3	1281	4	-78	1636	0	0	5prime_fragment	FALSE	canonical	3	436	junction_1	382.5	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACATACCTTTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	174852033	174859405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_174852115_174858430_174858558_174858749
ENSMUSG00000078906.10_174852034_174859744_1	chr2	+	1203	3	ISM	ENSMUSG00000078906.10	ENSMUST00000109070.3	1281	4	-78	1297	0	339	5prime_fragment	FALSE	canonical	3	436	junction_1	382.5	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTTCCCATTTCATGT	NA	False	NA	NA	False	NA	NA	NA	174852033	174859744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_174852115_174858430_174858558_174858749
ENSMUSG00000078906.10_174852034_174859862_1	chr2	+	1321	3	ISM	ENSMUSG00000078906.10	ENSMUST00000109070.3	1281	4	-78	1179	0	457	5prime_fragment	FALSE	canonical	3	436	junction_1	382.5	3179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174852033	174859862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_174852115_174858430_174858558_174858749
ENSMUSG00000078906.10_174852034_174859862_2	chr2	+	1376	4	FSM	ENSMUSG00000078906.10	ENSMUST00000109069.8	919	4	0	-457	0	457	multi-exon	FALSE	canonical	3	233	junction_1	395.454450249611	3534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174852033	174859862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_174852115_174855220_174855276_174858430_174858558_174858749
ENSMUSG00000078906.10_174852034_174860063_1	chr2	+	381	4	FSM	ENSMUSG00000078906.10	ENSMUST00000109070.3	1281	4	-78	978	0	658	multi-exon	FALSE	canonical	3	436	junction_1	343.521307765456	4005	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	174852033	174860063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_174852115_174858430_174858558_174858749_174858811_174859951
ENSMUSG00000078906.10_174852034_174860063_2	chr2	+	436	5	NIC	ENSMUSG00000078906.10	novel	919	4	NA	NA	0	658	combination_of_known_junctions	FALSE	canonical	3	233	junction_1	354.600743795046	3924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	174852033	174860063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_174852115_174855220_174855276_174858430_174858558_174858749_174858811_174859951
ENSMUSG00000078906.10_174852034_174875515_1	chr2	+	596	4	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	0	14474	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	492.380837247845	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATTTAGGTCGTTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	174852033	174875515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_174852115_174858430_174858558_174858749_174858811_174875188
ENSMUSG00000078919.11_168052201_168072284_1	chr2	-	992	9	NIC	ENSMUSG00000078919.11	novel	2293	9	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	32	junction_2	140.419683449294	3993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTGCTTTCATTTAGA	NA	False	NA	-19	True	AATAAA	-23	NA	168072284	168052200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_168052557_168053285_168053348_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
ENSMUSG00000078919.11_168052201_168072284_2	chr2	-	1035	8	NNC	ENSMUSG00000078919.11	novel	722	8	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	161.63438207692	6839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTGCTTTCATTTAGA	NA	False	NA	-19	True	AATAAA	-23	NA	168072284	168052200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059713_168061956_168062034_168065040_168065075_168069322_168069423_168072112
ENSMUSG00000078919.11_168052201_168072284_3	chr2	-	1045	9	FSM	ENSMUSG00000078919.11	ENSMUST00000154111.8	2293	9	15	1233	-2	0	multi-exon	FALSE	canonical	3	450	junction_3	8.66656650583148	8604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTGCTTTCATTTAGA	NA	False	NA	-19	True	AATAAA	-23	NA	168072284	168052200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
ENSMUSG00000078919.11_168052436_168072284_1	chr2	-	810	9	FSM	ENSMUSG00000078919.11	ENSMUST00000154111.8	2293	9	15	1468	-2	0	multi-exon	FALSE	canonical	3	450	junction_3	8.66656650583148	4140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTCCCGTGTTCATTTC	NA	False	NA	-14	True	CATAAA	-16	NA	168072284	168052435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
ENSMUSG00000078919.11_168052436_168072284_2	chr2	-	757	9	NIC	ENSMUSG00000078919.11	novel	2293	9	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	32	junction_2	140.419683449294	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTCCCGTGTTCATTTC	NA	False	NA	-14	True	CATAAA	-16	NA	168072284	168052435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_168052557_168053285_168053348_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
ENSMUSG00000078919.11_168052436_168072284_3	chr2	-	800	8	NNC	ENSMUSG00000078919.11	novel	722	8	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	161.63438207692	1458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTCCCGTGTTCATTTC	NA	False	NA	-14	True	CATAAA	-16	NA	168072284	168052435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059713_168061956_168062034_168065040_168065075_168069322_168069423_168072112
ENSMUSG00000078931.5_107773530_107774841_1	chr8	-	523	2	FSM	ENSMUSG00000078931.5	ENSMUST00000055316.10	1306	2	405	378	405	-378	multi-exon	FALSE	canonical	3	275	junction_1	0	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCCATGGAGAGGAGTGG	NA	False	NA	-10	True	ATTAAA	-22	NA	107774841	107773529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_107773904_107774692
ENSMUSG00000078941.10_100787870_100802867_1	chr13	+	915	5	FSM	ENSMUSG00000078941.10	ENSMUST00000022135.15	1298	5	383	0	0	0	multi-exon	FALSE	canonical	3	650	junction_4	426.823734110464	7769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACATCTCTTTAATAGTA	NA	False	NA	37	True	AATAAA	-14	NA	100787869	100802867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_100787954_100790698_100790792_100800402_100800462_100800558_100800705_100802334
ENSMUSG00000078952.10_97619209_97627116_1	chr13	+	438	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	0	908	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	86.5139680437019	212	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGCTTGTATTCCATCTG	NA	False	NA	4	True	AATACA	-15	NA	97619208	97627116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97619286_97619456_97619541_97625686_97625857_97627009
ENSMUSG00000078952.10_97619209_97627334_1	chr13	+	656	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	0	1126	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	86.5139680437019	247	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGGCTAGTCTGTGATTT	NA	False	NA	NA	False	NA	NA	NA	97619208	97627334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97619286_97619456_97619541_97625686_97625857_97627009
ENSMUSG00000078952.10_97619209_97632576_1	chr13	+	1905	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	0	-939	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_3	70.6745278646337	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAATGAATGTTTTGTCT	NA	False	NA	12	True	AAAAAG	-16	NA	97619208	97632576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97629744_97630912
ENSMUSG00000078952.10_97619209_97632576_3	chr13	+	1825	3	FSM	ENSMUSG00000078952.10	ENSMUST00000179324.2	2764	3	0	939	0	-939	multi-exon	FALSE	canonical	3	54	junction_2	70.5	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAATGAATGTTTTGTCT	NA	False	NA	12	True	AAAAAG	-16	NA	97619208	97632576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_97619286_97619456_97619541_97630912
ENSMUSG00000078952.10_97619209_97633515_2	chr13	+	3339	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	166	junction_3	11.8602979164381	643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	21	True	AATAAA	-18	NA	97619208	97633515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97630239_97630912
ENSMUSG00000078954.10_84604284_84656405_2	chr15	+	1485	12	NIC	ENSMUSG00000078954.10	novel	1527	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	58.989143138924	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGGGGGTTTTGTGCTT	NA	False	NA	9	True	ATTAAA	-16	NA	84604283	84656405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_84604309_84617096_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
ENSMUSG00000078963.4_80273387_80280051_1	chr18	-	693	4	FSM	ENSMUSG00000078963.4	ENSMUST00000237192.2	1104	4	-3	414	-3	-414	multi-exon	FALSE	canonical	0	0	junction_2	16.9901932498329	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGTGACTACTTACCAAT	NA	False	NA	NA	False	AATAAA	-17	NA	80280051	80273386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_80273777_80276629_80276725_80278663_80278731_80279910
ENSMUSG00000078963.4_80273690_80280051_1	chr18	-	390	4	FSM	ENSMUSG00000078963.4	ENSMUST00000237192.2	1104	4	-3	717	-3	-717	multi-exon	FALSE	canonical	0	0	junction_2	16.9901932498329	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGATGTTCATTTAAATT	NA	False	NA	NA	False	NA	NA	NA	80280051	80273689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_80273777_80276629_80276725_80278663_80278731_80279910
ENSMUSG00000078974.11_16451651_16458132_1	chr11	-	414	4	FSM	ENSMUSG00000078974.11	ENSMUST00000178855.8	779	4	352	13	0	0	multi-exon	FALSE	canonical	3	96	junction_3	2890.84082347449	2879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCCATAACAGACATTTAT	NA	False	NA	-51	True	AATAAA	-6	NA	16458132	16451650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458078
ENSMUSG00000078974.11_16451651_16458132_2	chr11	-	393	4	FSM	ENSMUSG00000078974.11	ENSMUST00000109642.8	691	4	34	264	0	0	multi-exon	FALSE	canonical	3	167	junction_3	2857.39815605425	4033	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCCATAACAGACATTTAT	NA	False	NA	-51	True	AATAAA	-6	NA	16458132	16451650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458099
ENSMUSG00000078974.11_16451651_16458166_1	chr11	-	427	4	FSM	ENSMUSG00000078974.11	ENSMUST00000109642.8	691	4	0	264	0	0	multi-exon	FALSE	canonical	3	167	junction_3	2857.39815605425	19741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCCATAACAGACATTTAT	NA	False	NA	-51	True	AATAAA	-6	NA	16458166	16451650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458099
ENSMUSG00000079008.3_150099437_150109198_1	chr2	+	583	4	NNC	ENSMUSG00000079008.3	novel	3018	4	NA	NA	0	-3022	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	22.5437845585479	80	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATATGTTCAGTGTGGTA	NA	False	NA	NA	False	NA	NA	NA	150099436	150109198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_150099549_150108044_150108172_150108370_150108432_150108915
ENSMUSG00000079008.3_150099437_150109590_1	chr2	+	1459	3	ISM	ENSMUSG00000079008.3	ENSMUST00000109922.2	3018	4	0	2630	0	-2630	intron_retention	FALSE	canonical	3	38	junction_2	8.5	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAATTCATAATGCAGA	NA	False	NA	NA	False	NA	NA	NA	150099436	150109590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_150099549_150108044_150108172_150108370
ENSMUSG00000079008.3_150099437_150109590_2	chr2	+	388	4	FSM	ENSMUSG00000079008.3	ENSMUST00000109922.2	3018	4	0	2630	0	-2630	multi-exon	FALSE	canonical	3	21	junction_3	13.8804418757713	868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAATTCATAATGCAGA	NA	False	NA	NA	False	NA	NA	NA	150099436	150109590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_150099549_150108044_150108172_150108370_150108432_150109502
ENSMUSG00000079008.3_150099437_150135966_1	chr2	+	580	4	NNC	ENSMUSG00000079008.3	novel	3018	4	NA	NA	0	23746	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_3	21.6487105081727	157	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAGACTATTCAGCTTAT	NA	False	NA	NA	False	AATAAA	-16	NA	150099436	150135966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_150099549_150108044_150108172_150108370_150108432_150135686
ENSMUSG00000079008.3_150099437_150135966_2	chr2	+	658	5	NNC	ENSMUSG00000079008.3	novel	3018	4	NA	NA	0	23746	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	20.216020874544	240	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAGACTATTCAGCTTAT	NA	False	NA	NA	False	AATAAA	-16	NA	150099436	150135966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_150099549_150108044_150108172_150108370_150108432_150135188_150135267_150135686
ENSMUSG00000079009.9_150023675_150033471_1	chr2	+	587	4	NNC	ENSMUSG00000079009.9	novel	1728	4	NA	NA	0	-1601	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	30.539591789457	84	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATATGTTCAGTGTGGTA	NA	False	NA	NA	False	NA	NA	NA	150023674	150033471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_150023791_150032312_150032440_150032638_150032700_150033188
ENSMUSG00000079009.9_150023675_150034208_1	chr2	+	737	4	FSM	ENSMUSG00000079009.9	ENSMUST00000109926.8	1728	4	0	991	0	-864	multi-exon	FALSE	canonical	3	34	junction_3	16.0485374896143	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACTGGAGAAAAACCCTT	NA	False	NA	NA	False	NA	NA	NA	150023674	150034208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_150023791_150032312_150032440_150032638_150032700_150033775
ENSMUSG00000079009.9_150023675_150034312_1	chr2	+	841	4	FSM	ENSMUSG00000079009.9	ENSMUST00000109926.8	1728	4	0	887	0	-760	multi-exon	FALSE	canonical	3	34	junction_3	16.0485374896143	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTGTGACCAGTGTGGTA	NA	False	NA	NA	False	NA	NA	NA	150023674	150034312	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_150023791_150032312_150032440_150032638_150032700_150033775
ENSMUSG00000079009.9_150023675_150048136_1	chr2	+	631	4	NNC	ENSMUSG00000079009.9	novel	1728	4	NA	NA	0	12937	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	25.381533094402	294	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTGTCTTGGCCTCGTTC	NA	False	NA	NA	False	NA	NA	NA	150023674	150048136	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_150023791_150032312_150032440_150032638_150032700_150047809
ENSMUSG00000079012.12_104343728_104360518_1	chr12	+	1805	5	NNC	ENSMUSG00000079012.12	novel	1658	5	NA	NA	-9695	2	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	12.328828005938	484	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTCTCAGCTTGCAGTC	659	False	NA	20	True	AATACA	-29	NA	104343727	104360518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_104343932_104355322_104355972_104357714_104357989_104358900_104359052_104359991
ENSMUSG00000079033.11_70611407_70620138_1	chr8	+	1413	9	NNC	ENSMUSG00000079033.11	novel	1337	9	NA	NA	5976	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	79.2668554630496	420	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	698	False	NA	5	True	NA	NA	NA	70611406	70620138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_70611545_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619077_70619263_70619349_70619468_70619557_70619715
ENSMUSG00000079033.11_70611407_70620138_2	chr8	+	1383	9	NNC	ENSMUSG00000079033.11	novel	1337	9	NA	NA	5976	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	77.3801492632316	399	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	698	False	NA	5	True	NA	NA	NA	70611406	70620138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_70611545_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619047_70619263_70619349_70619468_70619557_70619715
ENSMUSG00000079036.11_87474850_87490603_1	chr12	-	2096	8	NIC	ENSMUSG00000079036.11	novel	2154	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_6	101.263245543283	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACCTGTATCTGTCTTT	NA	False	NA	-56	True	AATAAA	-19	NA	87490603	87474849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87488040_87488114_87488412_87488551_87490411
ENSMUSG00000079056.13_127300160_127324100_1	chr2	-	867	8	FSM	ENSMUSG00000079056.13	ENSMUST00000088538.6	1296	8	319	110	319	0	multi-exon	FALSE	canonical	3	65	junction_1	5.52175659716791	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAAAGTGAGCAGTTTAC	9947	False	NA	-11	True	AATATA	-4	NA	127324100	127300159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_127300309_127301249_127301313_127301902_127302008_127302352_127302461_127306967_127307039_127307268_127307339_127307773_127307899_127323924
ENSMUSG00000079056.13_127300160_127363290_1	chr2	-	990	9	FSM	ENSMUSG00000079056.13	ENSMUST00000103215.11	2732	9	0	1742	0	0	multi-exon	FALSE	canonical	1	2	junction_7	30.8015320235861	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAAAGTGAGCAGTTTAC	NA	False	NA	-11	True	AATATA	-4	NA	127363290	127300159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_127300309_127301249_127301313_127301902_127302008_127302352_127302461_127306967_127307039_127307268_127307339_127307773_127307899_127352748_127352915_127363157
ENSMUSG00000079084.13_13246536_13253208_1	chr9	+	1227	3	FSM	ENSMUSG00000079084.13	ENSMUST00000169961.3	2369	3	-74	1216	0	1014	multi-exon	FALSE	canonical	3	27	junction_1	5	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGGAATTCATTTCCCT	NA	False	NA	4	True	AATAAA	-16	NA	13246535	13253208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_13246677_13251695_13252424_13252850
ENSMUSG00000079084.13_13246637_13253208_1	chr9	+	1126	3	FSM	ENSMUSG00000079084.13	ENSMUST00000169961.3	2369	3	27	1216	0	1014	multi-exon	FALSE	canonical	3	27	junction_1	5	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGGAATTCATTTCCCT	NA	False	NA	4	True	AATAAA	-16	NA	13246636	13253208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_13246677_13251695_13252424_13252850
ENSMUSG00000079108.7_55277226_55288810_1	chr12	+	1059	4	ISM	ENSMUSG00000079108.7	ENSMUST00000218879.2	3642	16	273	21811	273	-20995	5prime_fragment	FALSE	canonical	3	805	junction_1	77.2628989590447	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCTGTGTGTCTGTGTC	NA	False	NA	NA	False	AATAAA	-22	NA	55277225	55288810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_55277430_55286078_55286189_55287044_55287137_55288157
ENSMUSG00000079108.7_55277226_55309392_1	chr12	+	2140	16	FSM	ENSMUSG00000079108.7	ENSMUST00000218879.2	3642	16	273	1229	273	-413	multi-exon	FALSE	canonical	3	179	junction_11	270.209005524736	719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCGTTAACTTTCTTTA	NA	False	NA	NA	False	AATAAA	-20	NA	55277225	55309392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_55277430_55286078_55286189_55287044_55287137_55288157_55288243_55292723_55292829_55294017_55294085_55294164_55294223_55296788_55296940_55298428_55298578_55298911_55299013_55299556_55299644_55302323_55302398_55302752_55302862_55304209_55304381_55307187_55307284_55308911
ENSMUSG00000079109.12_143846843_143868260_1	chr5	+	2895	15	FSM	ENSMUSG00000079109.12	ENSMUST00000148011.8	5482	15	61	2526	0	0	multi-exon	FALSE	canonical	3	72	junction_4	18.4303708977484	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCATGTCTGCAGTTAC	NA	False	NA	NA	False	AAAAAG	-17	NA	143846842	143868260	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_143846898_143848738_143848879_143850219_143850307_143850436_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038_143862892_143864916_143865085_143865759_143865861_143865998_143866169_143867833
ENSMUSG00000079111.4_143389593_143406862_1	chr5	+	1035	5	FSM	ENSMUSG00000079111.4	ENSMUST00000110731.4	1829	5	0	794	0	-794	multi-exon	FALSE	canonical	3	606	junction_2	10.3531396204243	1596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGACAGTTTCCAAAAGT	NA	False	NA	6	True	AATAAA	-18	NA	143389592	143406862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555
ENSMUSG00000079111.4_143389593_143406862_2	chr5	+	1029	5	NNC	ENSMUSG00000079111.4	novel	1829	5	NA	NA	0	-794	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	266.643488576039	1562	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGACAGTTTCCAAAAGT	NA	False	NA	6	True	AATAAA	-18	NA	143389592	143406862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_143389802_143398245_143398347_143403804_143403964_143405194_143405448_143406555
ENSMUSG00000079111.4_143389593_143406929_1	chr5	+	1102	5	FSM	ENSMUSG00000079111.4	ENSMUST00000110731.4	1829	5	0	727	0	-727	multi-exon	FALSE	canonical	3	606	junction_2	10.3531396204243	1613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTGAGGTGGTCAATTC	NA	False	NA	73	True	NA	NA	NA	143389592	143406929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555
ENSMUSG00000079165.11_137639596_137641161_1	chr5	+	1283	4	NIC	ENSMUSG00000079165.11	novel	1005	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	204	junction_3	14.0079342596338	860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGCTGTCTGCAGTGGGA	1101	False	NA	23	True	AATAAA	-15	NA	137639595	137641161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_137640079_137640171_137640497_137640602_137640701_137640784
ENSMUSG00000079165.11_137639596_137641161_2	chr5	+	1078	6	NNC	ENSMUSG00000079165.11	novel	1005	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	86.5461726478993	851	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGCTGTCTGCAGTGGGA	1101	False	NA	23	True	AATAAA	-15	NA	137639595	137641161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_137639819_137639941_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
ENSMUSG00000079165.11_137639596_137641161_3	chr5	+	1015	6	NNC	ENSMUSG00000079165.11	novel	1005	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_1	81.7958434151761	712	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGCTGTCTGCAGTGGGA	1101	False	NA	23	True	AATAAA	-15	NA	137639595	137641161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_137639819_137640004_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
ENSMUSG00000079165.11_137639699_137641161_2	chr5	+	933	6	FSM	ENSMUSG00000079165.11	ENSMUST00000177466.8	1005	6	103	-31	0	0	multi-exon	FALSE	canonical	3	122	junction_1	39.5858560599616	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGCTGTCTGCAGTGGGA	1204	False	NA	23	True	AATAAA	-15	NA	137639698	137641161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_137639819_137639983_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
ENSMUSG00000079179.10_3285504_3288274_1	chr12	+	808	4	NNC	ENSMUSG00000079179.10	novel	4006	4	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	68.3569065030496	371	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTCTCAGGACAAATTTG	NA	False	NA	11	True	AATAAA	-20	NA	3285503	3288274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_3285930_3287346_3287413_3287590_3287661_3288028
ENSMUSG00000079179.10_3285504_3288274_2	chr12	+	773	4	NNC	ENSMUSG00000079179.10	novel	4006	4	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_3	79.4411032708439	217	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTCTCAGGACAAATTTG	NA	False	NA	11	True	AATAAA	-20	NA	3285503	3288274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_3285930_3287346_3287413_3287590_3287661_3288063
ENSMUSG00000079179.10_3285832_3288274_1	chr12	+	480	4	NNC	ENSMUSG00000079179.10	novel	4006	4	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	68.3569065030496	61	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTCTCAGGACAAATTTG	NA	False	NA	11	True	AATAAA	-20	NA	3285831	3288274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_3285930_3287346_3287413_3287590_3287661_3288028
ENSMUSG00000079179.10_3299429_3359969_1	chr12	+	1512	6	NIC	ENSMUSG00000079179.10	novel	778	7	NA	NA	12818	59592	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACACCCGCCCTTCTCTCG	NA	False	NA	NA	False	NA	NA	NA	3299428	3359969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_3299871_3302611_3302714_3303268_3303359_3306866_3307006_3314688_3314750_3359291
ENSMUSG00000079179.10_3299579_3359969_1	chr12	+	1362	6	NIC	ENSMUSG00000079179.10	novel	778	7	NA	NA	12968	59592	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACACCCGCCCTTCTCTCG	NA	False	NA	NA	False	NA	NA	NA	3299578	3359969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_3299871_3302611_3302714_3303268_3303359_3306866_3307006_3314688_3314750_3359291
ENSMUSG00000079179.10_3299701_3359969_1	chr12	+	1240	6	NIC	ENSMUSG00000079179.10	novel	778	7	NA	NA	13090	59592	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACACCCGCCCTTCTCTCG	NA	False	NA	NA	False	NA	NA	NA	3299700	3359969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_3299871_3302611_3302714_3303268_3303359_3306866_3307006_3314688_3314750_3359291
ENSMUSG00000079184.11_56905705_56911439_1	chr14	+	559	3	NNC	ENSMUSG00000079184.11	novel	2939	14	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	445.5	2529	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAATAAAGTGCAAAG	1778	False	NA	-32	True	AAGAAA	-3	NA	56905704	56911439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_56906022_56909867_56910018_56911347
ENSMUSG00000079184.11_56905705_56911439_2	chr14	+	565	3	ISM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	0	23448	0	5	5prime_fragment	FALSE	canonical	3	870	junction_1	10.5	2817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAATAAAGTGCAAAG	1778	False	NA	-32	True	AAGAAA	-3	NA	56905704	56911439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_56906022_56909861_56910018_56911347
ENSMUSG00000079184.11_56905705_56912201_1	chr14	+	1327	3	ISM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	0	22686	0	767	5prime_fragment	FALSE	canonical	3	870	junction_1	10.5	3786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGTGGAGAACTTGAAGA	1778	False	NA	11	True	NA	NA	NA	56905704	56912201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_56906022_56909861_56910018_56911347
ENSMUSG00000079184.11_56905956_56911439_1	chr14	+	314	3	ISM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	251	23448	251	5	5prime_fragment	FALSE	canonical	3	870	junction_1	10.5	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAATAAAGTGCAAAG	2029	False	NA	-32	True	AAGAAA	-3	NA	56905955	56911439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_+_56906022_56909861_56910018_56911347
ENSMUSG00000079197.11_55824904_55828405_1	chr14	-	815	11	NNC	ENSMUSG00000079197.11	novel	962	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	305.260282382101	8147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATATTACCTGTGTTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	55828405	55824903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_55825017_55825106_55825198_55825496_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827163_55827489_55827553_55827951_55827985_55828298
ENSMUSG00000079197.11_55824904_55828405_3	chr14	-	817	11	FSM	ENSMUSG00000079197.11	ENSMUST00000161807.8	962	11	139	6	0	0	multi-exon	FALSE	canonical	3	915	junction_9	61.4455856835949	8564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATATTACCTGTGTTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	55828405	55824903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55825023_55825110_55825198_55825496_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827163_55827489_55827553_55827951_55827985_55828298
ENSMUSG00000079215.9_124939828_124962608_1	chr5	+	933	4	FSM	ENSMUSG00000079215.9	ENSMUST00000111417.9	4092	4	73	3086	0	67	multi-exon	FALSE	canonical	3	206	junction_3	10.2089285540757	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTACAAGTGCCCCATG	NA	False	NA	NA	False	NA	NA	NA	124939827	124962608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124939947_124940417_124940573_124961771_124961837_124962014
ENSMUSG00000079224.6_100581644_100582804_1	chr6	+	1035	2	Genic_Genomic	ENSMUSG00000079224.6	novel	438	1	NA	NA	0	723	multi-exon	FALSE	non_canonical	0	0	junction_1	0	419	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTGTGCTATTTCTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	100581643	100582804	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_100581802_100581927
ENSMUSG00000079225.4_81559651_81560748_1	chr9	+	805	2	NNC	ENSMUSG00000079225.4	novel	638	2	NA	NA	0	18	at_least_one_novel_splicesite	FALSE	canonical	3	2674	junction_1	0	2169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAAGGACTGAGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	81559650	81560748	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_81560062_81560354
ENSMUSG00000079225.4_81559651_81560748_2	chr9	+	1057	2	NNC	ENSMUSG00000079225.4	novel	638	2	NA	NA	0	18	intron_retention	FALSE	canonical	3	1420	junction_1	0	7663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAAGGACTGAGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	81559650	81560748	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_81560470_81560510
ENSMUSG00000079261.3_46620977_46628039_1	chr14	+	1977	4	NIC	ENSMUSG00000079261.3	novel	733	4	NA	NA	2393	6974	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTTCCTTCTCTTTTCC	NA	False	NA	NA	False	NA	NA	NA	46620976	46628039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_46622170_46623171_46623552_46624612_46624738_46627760
ENSMUSG00000079316.11_165240249_165262663_1	chrX	-	1237	2	NNC	ENSMUSG00000079316.11	novel	1447	3	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGTTGCAATGCTTTTTAA	NA	False	NA	-8	True	ATTAAA	-24	NA	165262663	165240248	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_165241342_165262519
ENSMUSG00000079316.11_165240249_165262663_2	chrX	-	1247	3	FSM	ENSMUSG00000079316.11	ENSMUST00000112091.9	1447	3	200	0	-21	0	multi-exon	FALSE	canonical	3	555	junction_2	7.5	4381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGTTGCAATGCTTTTTAA	NA	False	NA	-8	True	ATTAAA	-24	NA	165262663	165240248	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_165241340_165245310_165245339_165262535
ENSMUSG00000079316.11_165240451_165262663_1	chrX	-	1045	3	FSM	ENSMUSG00000079316.11	ENSMUST00000112091.9	1447	3	200	202	-21	-202	multi-exon	FALSE	canonical	3	555	junction_2	7.5	1313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGACCAAGAACTGACTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	165262663	165240450	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_165241340_165245310_165245339_165262535
ENSMUSG00000079316.11_165240587_165262663_1	chrX	-	909	3	FSM	ENSMUSG00000079316.11	ENSMUST00000112091.9	1447	3	200	338	-21	159	multi-exon	FALSE	canonical	3	555	junction_2	7.5	1035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTTGCCTCATTAGTCG	NA	False	NA	-1	True	AATAAA	-15	NA	165262663	165240586	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_165241340_165245310_165245339_165262535
ENSMUSG00000079317.11_165223772_165236136_1	chrX	+	1404	5	NNC	ENSMUSG00000079317.11	novel	1613	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	101.671038157383	1437	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTCATTTGATGCC	NA	False	NA	9	True	AATAAA	-14	NA	165223771	165236136	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_165223836_165229786_165229899_165232783_165232929_165233631_165233711_165235132
ENSMUSG00000079349.10_153836057_153846141_1	chrX	-	1644	4	FSM	ENSMUSG00000079349.10	ENSMUST00000069556.4	1360	4	0	-284	0	0	multi-exon	FALSE	canonical	3	37	junction_1	7.03957069398096	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTTTAGTTTCTTTTT	NA	False	NA	0	True	AATAAA	-18	NA	153846141	153836056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_153837456_153838390_153838480_153844474_153844576_153846086
ENSMUSG00000079349.10_153836057_153846141_2	chrX	-	1748	5	NNC	ENSMUSG00000079349.10	novel	1360	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	19.2272592950738	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTTTAGTTTCTTTTT	NA	False	NA	0	True	AATAAA	-18	NA	153846141	153836056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_153837456_153838390_153838480_153844474_153844576_153845292_153845397_153846086
ENSMUSG00000079357.10_8508486_8520749_1	chr14	-	929	8	NNC	ENSMUSG00000079357.10	novel	3635	5	NA	NA	16120	10145	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3375	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGTAAACAGTCATGGAGGA	NA	False	NA	NA	False	NA	NA	NA	8520749	8508485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_8508579_8515106_8515225_8516230_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000079357.10_8508551_8520749_1	chr14	-	843	8	NIC	ENSMUSG00000079357.10	novel	3635	5	NA	NA	16120	10080	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	750	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGCGGCGGCGGCCGAGC	NA	False	NA	NA	False	NA	NA	NA	8520749	8508550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_8508579_8515106_8515198_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000079357.10_8508551_8520749_2	chr14	-	870	8	NIC	ENSMUSG00000079357.10	novel	3635	5	NA	NA	16120	10080	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3702	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGCGGCGGCGGCCGAGC	NA	False	NA	NA	False	NA	NA	NA	8520749	8508550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_8508579_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000079357.10_8508551_8520749_3	chr14	-	1042	9	NIC	ENSMUSG00000079357.10	novel	3635	5	NA	NA	16120	10080	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1361	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGCGGCGGCGGCCGAGC	NA	False	NA	NA	False	NA	NA	NA	8520749	8508550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_8508579_8512131_8512304_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000079357.10_8508551_8520749_4	chr14	-	1022	9	NIC	ENSMUSG00000079357.10	novel	3635	5	NA	NA	16120	10080	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1502	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGCGGCGGCGGCCGAGC	NA	False	NA	NA	False	NA	NA	NA	8520749	8508550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_8508579_8512131_8512284_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUSG00000079391.11_18281337_18287197_1	chr14	-	1137	2	ISM	ENSMUSG00000079391.11	ENSMUST00000164512.8	1990	7	0	16459	0	-16459	5prime_fragment	FALSE	canonical	2	7	junction_1	0	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAAATGTCCTCATAGTT	NA	False	NA	NA	False	AAGAAA	-8	NA	18287197	18281336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_18282389_18287112
ENSMUSG00000079426.14_113355076_113366143_1	chr6	+	1004	6	FSM	ENSMUSG00000079426.14	ENSMUST00000156898.5	2270	6	0	1266	0	0	multi-exon	FALSE	canonical	3	688	junction_1	248.294985853521	835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTCTGGGCGGGCCTGG	NA	False	NA	112	True	NA	NA	NA	113355075	113366143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_113355170_113357686_113357806_113358923_113359036_113361042_113361139_113362450_113362622_113365731
ENSMUSG00000079426.14_113355154_113366614_1	chr6	+	1397	6	FSM	ENSMUSG00000079426.14	ENSMUST00000156898.5	2270	6	78	795	0	1	multi-exon	FALSE	canonical	3	688	junction_1	248.294985853521	3337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTGTGCTCTGTGTGGGT	NA	False	NA	39	True	ATTAAA	-31	NA	113355153	113366614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_113355170_113357686_113357806_113358923_113359036_113361042_113361139_113362450_113362622_113365731
ENSMUSG00000079427.11_88570659_88601623_1	chr9	-	724	3	NIC	ENSMUSG00000079427.11	novel	725	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	156	junction_2	185.5	2484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAGAAATCAATAGAAAT	NA	False	NA	NA	False	AATAAA	-16	NA	88601623	88570658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_88571039_88597540_88597803_88601541
ENSMUSG00000079427.11_88570659_88601866_1	chr9	-	867	4	NIC	ENSMUSG00000079427.11	novel	725	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_3	226.851395313222	2975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAGAAATCAATAGAAAT	NA	False	NA	NA	False	AATAAA	-16	NA	88601866	88570658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_88571039_88597540_88597803_88598546_88598617_88601711
ENSMUSG00000079428.9_135114722_135116206_1	chrX	+	785	3	NNC	ENSMUSG00000079428.9	novel	453	4	NA	NA	-806	-9930	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	48120	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCGAGGGCAGGTCCGAGA	NA	False	NA	NA	False	NA	NA	NA	135114721	135116206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_135115309_135115652_135115730_135116085
ENSMUSG00000079428.9_135114722_135116206_2	chrX	+	789	3	NNC	ENSMUSG00000079428.9	novel	453	4	NA	NA	-806	-9930	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	38467	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCGAGGGCAGGTCCGAGA	NA	False	NA	NA	False	NA	NA	NA	135114721	135116206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_135115333_135115652_135115730_135116105
ENSMUSG00000079428.9_135114722_135116206_3	chrX	+	793	3	NNC	ENSMUSG00000079428.9	novel	453	4	NA	NA	-806	-9930	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	64934	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCGAGGGCAGGTCCGAGA	NA	False	NA	NA	False	NA	NA	NA	135114721	135116206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_135115333_135115668_135115730_135116085
ENSMUSG00000079428.9_135114722_135116206_4	chrX	+	795	3	NNC	ENSMUSG00000079428.9	novel	453	4	NA	NA	-806	-9930	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	74225	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCGAGGGCAGGTCCGAGA	NA	False	NA	NA	False	NA	NA	NA	135114721	135116206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_135115333_135115652_135115730_135116099
ENSMUSG00000079435.10_133486439_133488805_1	chrX	+	440	5	NNC	ENSMUSG00000079435.10	novel	483	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	5556.20547226252	208253	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAAGTTTTTCTCCTGTT	NA	False	NA	75	True	ATTAAA	-16	NA	133486438	133488805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_133486469_133486826_133486933_133487259_133487328_133488199_133488323_133488692
ENSMUSG00000079442.13_32477107_32487714_1	chr2	+	1630	6	FSM	ENSMUSG00000079442.13	ENSMUST00000102818.11	3626	6	0	1996	0	1	multi-exon	FALSE	canonical	3	25	junction_4	7.22218803410712	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGTCTCTGTGGTAAC	NA	False	NA	8	True	NA	NA	NA	32477106	32487714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_32477240_32477592_32477694_32479456_32479643_32484001_32484415_32485705_32485814_32487025
ENSMUSG00000079450.12_122013192_122028170_1	chrX	+	399	3	NNC	ENSMUSG00000079450.12	novel	3301	3	NA	NA	0	-24609	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3.5	48	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTGGGCTCCTGGTCATT	NA	False	NA	NA	False	NA	NA	NA	122013191	122028170	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_122013335_122027150_122027267_122028030
ENSMUSG00000079471.5_45911897_45912896_1	chr17	-	819	2	FSM	ENSMUSG00000079471.5	ENSMUST00000208801.2	437	2	0	-382	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	1617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGGTGGTGGCTTTTGT	NA	False	NA	-5	True	AATAAA	-20	NA	45912896	45911896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45912612_45912792
ENSMUSG00000079471.5_45911897_45912896_2	chr17	-	903	2	FSM	ENSMUSG00000079471.5	ENSMUST00000169137.3	616	2	-4	-283	0	0	multi-exon	FALSE	canonical	3	164	junction_1	0	3136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGGTGGTGGCTTTTGT	NA	False	NA	-5	True	AATAAA	-20	NA	45912896	45911896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45912612_45912708
ENSMUSG00000079477.10_87976088_88022252_1	chr6	-	2152	6	NNC	ENSMUSG00000079477.10	novel	2159	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	27	junction_1	736.820086588307	2367	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTCTTTTTCT	NA	False	NA	NA	False	AATAAA	-22	NA	88022252	87976087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_87977506_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
ENSMUSG00000079477.10_87976425_88022252_1	chr6	-	1822	6	FSM	ENSMUSG00000079477.10	ENSMUST00000113600.10	2159	6	0	337	0	0	multi-exon	FALSE	canonical	3	1571	junction_1	157.281403859452	972	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTCACTATCCTACTC	NA	False	NA	36	True	NA	NA	NA	88022252	87976424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
ENSMUSG00000079477.10_87976787_88022252_1	chr6	-	1460	6	FSM	ENSMUSG00000079477.10	ENSMUST00000113600.10	2159	6	0	699	0	0	multi-exon	FALSE	canonical	3	1571	junction_1	157.281403859452	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCCTGGATTGTGTGTTT	NA	False	NA	0	True	ATTAAA	-21	NA	88022252	87976786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
ENSMUSG00000079478.10_5780335_5781741_1	chr19	-	761	3	ISM	ENSMUSG00000079478.10	ENSMUST00000025885.6	699	4	14	4	14	0	intron_retention	FALSE	canonical	3	466	junction_2	18.5	2775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGTTTGTTCTTTCTTGG	NA	False	NA	-1	True	AAAACA	-13	NA	5781741	5780334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_5780741_5781268_5781354_5781471
ENSMUSG00000079478.10_5780335_5781741_2	chr19	-	788	4	NIC	ENSMUSG00000079478.10	novel	699	4	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	217.355827056823	2621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGTTTGTTCTTTCTTGG	NA	False	NA	-1	True	AAAACA	-13	NA	5781741	5780334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_5780741_5781161_5781354_5781471_5781624_5781703
ENSMUSG00000079480.4_101163053_101171275_1	chrX	+	488	4	NNC	ENSMUSG00000079480.4	novel	489	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	526.137075506205	20468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTGTTTTCTATTTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	101163052	101171275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_101163171_101165273_101165352_101170627_101170743_101171098
ENSMUSG00000079480.4_101163118_101171275_1	chrX	+	423	4	NNC	ENSMUSG00000079480.4	novel	489	4	NA	NA	-57	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	526.137075506205	17084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTGTTTTCTATTTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	101163117	101171275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_101163171_101165273_101165352_101170627_101170743_101171098
ENSMUSG00000079484.13_30156747_30169538_1	chr2	+	691	9	NIC	ENSMUSG00000079484.13	novel	1325	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	21	junction_8	24.4767108697227	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTTATGTATATGTGT	9931	False	NA	NA	False	NA	NA	NA	30156746	30169538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_30156803_30156874_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169406
ENSMUSG00000079484.13_30156831_30169538_1	chr2	+	801	8	NNC	ENSMUSG00000079484.13	novel	751	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	30.9627821351864	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTTATGTATATGTGT	NA	False	NA	NA	False	NA	NA	NA	30156830	30169538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167512_30167657_30169406
ENSMUSG00000079484.13_30156831_30169538_3	chr2	+	677	8	NIC	ENSMUSG00000079484.13	novel	751	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	30.5834422322849	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTTATGTATATGTGT	NA	False	NA	NA	False	NA	NA	NA	30156830	30169538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_30156954_30159700_30159864_30164487_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169406
ENSMUSG00000079484.13_30156831_30169538_4	chr2	+	679	8	NIC	ENSMUSG00000079484.13	novel	751	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	21	junction_7	22.4844617549134	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTTATGTATATGTGT	NA	False	NA	NA	False	NA	NA	NA	30156830	30169538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169406
ENSMUSG00000079484.13_30156831_30172160_1	chr2	+	1158	8	NIC	ENSMUSG00000079484.13	novel	1678	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_4	24.4565420486951	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	NA	False	NA	NA	False	AATAAA	-17	NA	30156830	30172160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30169966_30170096_30170182_30170300_30171021_30171149_30171781
ENSMUSG00000079484.13_30156831_30172160_2	chr2	+	1299	11	ISM	ENSMUSG00000079484.13	ENSMUST00000113645.8	1325	12	98	0	0	0	3prime_fragment	FALSE	canonical	2	39	junction_2	15.9185426468631	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	NA	False	NA	NA	False	AATAAA	-17	NA	30156830	30172160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
ENSMUSG00000079484.13_30156831_30172160_3	chr2	+	1297	11	NIC	ENSMUSG00000079484.13	novel	1678	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	23.5391163810369	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	NA	False	NA	NA	False	AATAAA	-17	NA	30156830	30172160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_30156954_30159700_30159864_30164487_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
ENSMUSG00000079508.9_93410723_93456273_1	chrX	+	806	8	ISM	ENSMUSG00000079508.9	ENSMUST00000113898.8	784	9	0	4294	0	-4294	5prime_fragment	FALSE	canonical	3	325	junction_1	49.0588983794386	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAAGGCTCATGTTTATTT	NA	False	NA	NA	False	NA	NA	NA	93410722	93456273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_93410769_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065
ENSMUSG00000079509.11_93141780_93166738_1	chrX	-	834	3	ISM	ENSMUSG00000079509.11	ENSMUST00000113927.8	6933	8	275	23542	0	0	5prime_fragment	FALSE	canonical	3	21	junction_2	52.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTGTCCAGGTGTGATG	NA	False	NA	NA	False	ATTAAA	-28	NA	93166738	93141779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_93142459_93145896_93145987_93166673
ENSMUSG00000079511.9_83083589_83085968_1	chr6	+	751	3	NIC	ENSMUSG00000107499.2	novel	447	2	NA	NA	-493	593	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGGCTGAAGTATTCGCG	4951	False	NA	NA	False	NA	NA	NA	83083588	83085968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_83084172_83084723_83084788_83085864
ENSMUSG00000079511.9_83086101_83086920_1	chr6	+	602	3	NNC	ENSMUSG00000030037.10	novel	695	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	373.5	1909	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	7463	False	NA	NA	False	ATTAAA	-19	NA	83086100	83086920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_83086185_83086307_83086408_83086502
ENSMUSG00000079511.9_83086101_83086920_2	chr6	+	606	3	NNC	ENSMUSG00000030037.10	novel	695	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	373.5	3174	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	7463	False	NA	NA	False	ATTAAA	-19	NA	83086100	83086920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_83086176_83086294_83086408_83086502
ENSMUSG00000079511.9_83086101_83086920_3	chr6	+	621	3	NNC	ENSMUSG00000030037.10	novel	695	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	373.5	7075	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	7463	False	NA	NA	False	ATTAAA	-19	NA	83086100	83086920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_83086191_83086294_83086408_83086502
ENSMUSG00000079511.9_83086101_83086920_4	chr6	+	725	2	NIC	ENSMUSG00000030037.10	novel	695	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	747	junction_1	0	611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	7463	False	NA	NA	False	ATTAAA	-19	NA	83086100	83086920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_83086408_83086502
ENSMUSG00000079523.9_72934336_72935117_1	chr6	-	522	2	FSM	ENSMUSG00000079523.9	ENSMUST00000114049.2	690	2	168	0	168	0	multi-exon	FALSE	canonical	3	26814	junction_1	0	44613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGGCGTGGTCTGAAT	NA	False	NA	-17	True	AATAAA	-14	NA	72935117	72934335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72934636_72934895
ENSMUSG00000079523.9_72934336_72935382_1	chr6	-	735	2	FSM	ENSMUSG00000079523.9	ENSMUST00000144337.2	433	2	0	-302	0	0	multi-exon	FALSE	canonical	3	27215	junction_1	0	5794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGGCGTGGTCTGAAT	NA	False	NA	-17	True	AATAAA	-14	NA	72935382	72934335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72935008_72935319
ENSMUSG00000079532.2_73784412_73785815_1	chrX	+	918	3	FSM	ENSMUSG00000079532.2	ENSMUST00000114117.2	776	3	-121	-21	-121	21	multi-exon	FALSE	canonical	2	2	junction_1	2.5	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCATCTGATTTTACTT	9966	False	NA	NA	False	AATAAA	-13	NA	73784411	73785815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73784886_73785195_73785325_73785500
ENSMUSG00000079536.2_73523723_73525122_1	chrX	-	707	2	NNC	ENSMUSG00000079536.2	novel	627	3	NA	NA	-117	170	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	98	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCATCTGATTTTACTT	NA	False	NA	NA	False	AATAAA	-13	NA	73525122	73523722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_73523960_73524652
ENSMUSG00000079536.2_73523723_73525122_2	chrX	-	914	3	FSM	ENSMUSG00000079536.2	ENSMUST00000114125.2	627	3	-117	-170	-117	170	multi-exon	FALSE	canonical	3	15	junction_1	3.5	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCATCTGATTTTACTT	NA	False	NA	NA	False	AATAAA	-13	NA	73525122	73523722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_73524038_73524213_73524343_73524652
ENSMUSG00000079536.2_73523723_73525122_3	chrX	-	823	3	NNC	ENSMUSG00000079536.2	novel	627	3	NA	NA	-117	170	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	10	191	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCATCTGATTTTACTT	NA	False	NA	NA	False	AATAAA	-13	NA	73525122	73523722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_73523960_73524226_73524343_73524652
ENSMUSG00000079547.5_34372154_34379204_1	chr17	+	1296	6	FSM	ENSMUSG00000079547.5	ENSMUST00000114232.4	1404	6	108	0	108	0	multi-exon	FALSE	canonical	3	11	junction_3	6.61513416341649	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGTTTGTCCTGGGTTT	NA	False	NA	NA	False	AATAAA	-21	NA	34372153	34379204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34372428_34374406_34374689_34376219_34376505_34378317_34378435_34378602_34378639_34378902
ENSMUSG00000079555.3_34311224_34326796_1	chr5	-	2082	6	NIC	ENSMUSG00000079555.3	novel	2073	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	227.84327947078	819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTGTGTTTTTGTTTTT	9401	False	NA	0	True	NA	NA	NA	34326796	34311223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_34311451_34320866_34321096_34323259_34323700_34324748_34325788_34326114_34326199_34326733
ENSMUSG00000079578.2_66725831_66738074_1	chrX	-	1658	9	NNC	ENSMUSG00000079578.2	novel	782	8	NA	NA	-906	675	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_8	9.82264602843857	316	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTACTTGAAATATGTCAAT	NA	False	NA	NA	False	AATAAA	-19	NA	66738074	66725830	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_66726652_66726758_66726864_66732572_66732672_66733445_66733546_66734431_66734550_66736337_66736373_66736521_66736592_66737059_66737213_66737917
ENSMUSG00000079610.10_36578109_36586300_1	chr1	-	949	4	FSM	ENSMUSG00000079610.10	ENSMUST00000001172.12	2109	4	226	934	0	332	multi-exon	FALSE	canonical	3	48	junction_3	11.5566238822398	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGGGGGCAGGTTTCT	7026	False	NA	NA	False	AATAAA	-19	NA	36586300	36578108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_36578616_36580939_36581144_36581842_36581947_36586166
ENSMUSG00000079610.10_36578220_36586300_1	chr1	-	838	4	FSM	ENSMUSG00000079610.10	ENSMUST00000001172.12	2109	4	226	1045	0	221	multi-exon	FALSE	canonical	3	48	junction_3	11.5566238822398	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACATGGGCAAAGATAAAT	7026	False	NA	-8	True	AATAAA	-19	NA	36586300	36578219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_36578616_36580939_36581144_36581842_36581947_36586166
ENSMUSG00000079610.10_36578220_36586300_2	chr1	-	1014	4	FSM	ENSMUSG00000079610.10	ENSMUST00000207843.2	2646	4	0	1632	0	221	multi-exon	FALSE	canonical	3	9	junction_3	29.9369708257569	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACATGGGCAAAGATAAAT	7026	False	NA	-8	True	AATAAA	-19	NA	36586300	36578219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_36578616_36580939_36581144_36581842_36581947_36585990
ENSMUSG00000079614.5_67908045_67926672_1	chr18	+	1558	9	FSM	ENSMUSG00000079614.5	ENSMUST00000025421.9	3542	9	99	1885	0	1009	multi-exon	FALSE	canonical	3	1509	junction_8	173.331285043987	1741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGAGTGGTAATGTGT	NA	False	NA	10	True	AATAAA	-16	NA	67908044	67926672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
ENSMUSG00000079614.5_67908045_67926672_2	chr18	+	1549	9	NNC	ENSMUSG00000079614.5	novel	3542	9	NA	NA	0	1009	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	622.80730366623	657	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGAGTGGTAATGTGT	NA	False	NA	10	True	AATAAA	-16	NA	67908044	67926672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926228
ENSMUSG00000079614.5_67908045_67926672_3	chr18	+	1507	8	NIC	ENSMUSG00000079614.5	novel	3542	9	NA	NA	0	1009	combination_of_known_splicesites	FALSE	canonical	3	61	junction_1	593.295810171745	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGAGTGGTAATGTGT	NA	False	NA	10	True	AATAAA	-16	NA	67908044	67926672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_67908191_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
ENSMUSG00000079614.5_67908045_67926672_4	chr18	+	1553	9	NNC	ENSMUSG00000079614.5	novel	3542	9	NA	NA	0	1009	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	623.632854731051	1475	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGAGTGGTAATGTGT	NA	False	NA	10	True	AATAAA	-16	NA	67908044	67926672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922414_67922568_67924933_67925085_67926219
ENSMUSG00000079626.3_36975316_36979921_1	chrX	-	391	3	NNC	ENSMUSG00000079626.3	novel	1091	8	NA	NA	6188	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5.5	72	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGGTGTCTTCTGGATT	9772	False	NA	NA	False	AATAAA	-21	NA	36979921	36975315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_36975541_36976568_36976615_36979801
ENSMUSG00000079627.3_36850642_36854933_1	chrX	-	378	3	NIC	ENSMUSG00000079627.3	novel	779	4	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_2	14.5	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTGCTTCTTCTG	9226	False	NA	NA	False	AATAAA	-20	NA	36854933	36850641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_36850876_36852672_36852719_36854835
ENSMUSG00000079628.4_36828153_36832980_1	chrX	-	933	3	NIC	ENSMUSG00000079628.4	novel	979	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	10	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTCTTTTTGATTA	6368	False	NA	NA	False	AATAAA	-21	NA	36832980	36828152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_36828390_36832090_36832497_36832690
ENSMUSG00000079629.6_36820768_36825123_1	chrX	-	959	3	ISM	ENSMUSG00000079629.6	ENSMUST00000115169.4	795	4	0	-2	0	0	intron_retention	FALSE	canonical	2	5	junction_2	5.5	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATATTTGTTTTGTGCTT	NA	False	NA	NA	False	AATAAA	-14	NA	36825123	36820767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_36820996_36822809_36822856_36824438
ENSMUSG00000079629.6_36820768_36825123_2	chrX	-	751	3	NIC	ENSMUSG00000079629.6	novel	795	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	7.5	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATATTTGTTTTGTGCTT	NA	False	NA	NA	False	AATAAA	-14	NA	36825123	36820767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_36820996_36824438_36824851_36825012
ENSMUSG00000079638.9_36593720_36598461_1	chrX	+	880	3	NNC	ENSMUSG00000079638.9	novel	799	4	NA	NA	0	2	intron_retention	FALSE	canonical	1	3	junction_2	25	192	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTTGTGCTTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	36593719	36598461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_36594405_36595944_36595991_36598312
ENSMUSG00000079638.9_36593720_36598461_2	chrX	+	963	3	NIC	ENSMUSG00000079638.9	novel	799	4	NA	NA	0	2	intron_retention	FALSE	canonical	3	16	junction_2	18.5	854	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTTGTGCTTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	36593719	36598461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_36594405_36595944_36595991_36598229
ENSMUSG00000079638.9_36593720_36598461_3	chrX	+	850	5	NNC	ENSMUSG00000079638.9	novel	799	4	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	28.743477520996	1213	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTTGTGCTTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	36593719	36598461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_36593831_36593992_36594405_36595944_36595991_36596258_36596308_36598229
ENSMUSG00000079638.9_36593720_36598461_4	chrX	+	718	4	NNC	ENSMUSG00000079638.9	novel	799	4	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	29.4392028877595	293	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTTGTGCTTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	36593719	36598461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_36593831_36593992_36594405_36595944_36595991_36598312
ENSMUSG00000079641.4_36346173_36348511_1	chrX	-	438	3	NNC	ENSMUSG00000079641.4	novel	612	3	NA	NA	298	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	6415	21432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36348511	36346172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_36346403_36347637_36347742_36348407
ENSMUSG00000079641.4_36346173_36348834_1	chrX	-	378	3	NNC	ENSMUSG00000079641.4	novel	612	3	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6459.5	50206	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36348834	36346172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_36346390_36347637_36347742_36348777
ENSMUSG00000079641.4_36346173_36348834_2	chrX	-	411	3	NNC	ENSMUSG00000079641.4	novel	612	3	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6424.5	205302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36348834	36346172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_36346403_36347637_36347762_36348777
ENSMUSG00000079641.4_36346173_36348834_3	chrX	-	373	3	NNC	ENSMUSG00000079641.4	novel	612	3	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6459.5	7866	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36348834	36346172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_36346385_36347637_36347742_36348777
ENSMUSG00000079641.4_36346173_36348834_4	chrX	-	386	3	NNC	ENSMUSG00000079641.4	novel	612	3	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6459.5	203206	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36348834	36346172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_36346403_36347642_36347742_36348777
ENSMUSG00000079641.4_36346173_36348834_5	chrX	-	364	3	NNC	ENSMUSG00000079641.4	novel	612	3	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6459.5	3777	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36348834	36346172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_36346376_36347637_36347742_36348777
ENSMUSG00000079641.4_36346173_36348834_6	chrX	-	378	3	NNC	ENSMUSG00000079641.4	novel	612	3	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6459.5	23443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36348834	36346172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_36346376_36347623_36347742_36348777
ENSMUSG00000079641.4_36346173_36348834_7	chrX	-	390	3	NNC	ENSMUSG00000079641.4	novel	612	3	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6459.5	243705	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36348834	36346172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_36346390_36347625_36347742_36348777
ENSMUSG00000079641.4_36346173_36348834_8	chrX	-	663	3	NNC	ENSMUSG00000079641.4	novel	612	3	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6424.5	21813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36348834	36346172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_36346403_36347637_36348014_36348777
ENSMUSG00000079641.4_36346173_36348834_9	chrX	-	392	3	NNC	ENSMUSG00000079641.4	novel	612	3	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6459.5	230844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36348834	36346172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_36346390_36347623_36347742_36348777
ENSMUSG00000079657.11_24748039_24752693_1	chr17	-	1395	9	FSM	ENSMUSG00000079657.11	ENSMUST00000035797.16	1575	9	169	11	-7	0	multi-exon	FALSE	canonical	3	65	junction_8	7.78520230951001	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTGTCATCTGTGGAA	NA	False	NA	-13	True	AATAAA	-12	NA	24752693	24748038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24748618_24748714_24748792_24748887_24748945_24749028_24749095_24749364_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
ENSMUSG00000079657.11_24748039_24752693_2	chr17	-	1318	8	NIC	ENSMUSG00000079657.11	novel	1575	9	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	28.0393309769091	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTGTCATCTGTGGAA	NA	False	NA	-13	True	AATAAA	-12	NA	24752693	24748038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_24748618_24748887_24748945_24749028_24749095_24749364_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
ENSMUSG00000079658.10_16712991_16727102_1	chr1	-	966	4	FSM	ENSMUSG00000079658.10	ENSMUST00000188641.7	2014	4	6	1042	0	0	multi-exon	FALSE	canonical	3	1161	junction_3	673.864641864785	8034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTGTGTTTTGTTTATT	NA	False	NA	-2	True	TATAAA	-20	NA	16727102	16712990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727045
ENSMUSG00000079658.10_16713366_16727102_1	chr1	-	591	4	FSM	ENSMUSG00000079658.10	ENSMUST00000188641.7	2014	4	6	1417	0	0	multi-exon	FALSE	canonical	3	1161	junction_3	673.864641864785	5591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGAGTTGAAATTTGTTT	NA	False	NA	-82	True	NA	NA	NA	16727102	16713365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727045
ENSMUSG00000079658.10_16713366_16727266_1	chr1	-	585	4	FSM	ENSMUSG00000079658.10	ENSMUST00000115352.10	960	4	0	375	0	0	multi-exon	FALSE	canonical	3	1066	junction_3	717.825574603995	10161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGAGTTGAAATTTGTTT	NA	False	NA	-82	True	NA	NA	NA	16727266	16713365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727215
ENSMUSG00000079658.10_16713415_16727102_1	chr1	-	542	4	FSM	ENSMUSG00000079658.10	ENSMUST00000188641.7	2014	4	6	1466	0	0	multi-exon	FALSE	canonical	3	1161	junction_3	673.864641864785	5592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAGCTGTAAAGCTAATT	NA	False	NA	52	True	NA	NA	NA	16727102	16713414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727045
ENSMUSG00000079658.10_16713415_16727266_1	chr1	-	616	4	FSM	ENSMUSG00000079658.10	ENSMUST00000186948.7	641	4	-24	49	0	0	multi-exon	FALSE	canonical	3	147	junction_3	1146.38165062465	8038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAGCTGTAAAGCTAATT	NA	False	NA	52	True	NA	NA	NA	16727266	16713414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727135
ENSMUSG00000079658.10_16713415_16727266_2	chr1	-	536	4	FSM	ENSMUSG00000079658.10	ENSMUST00000115352.10	960	4	0	424	0	0	multi-exon	FALSE	canonical	3	1066	junction_3	717.825574603995	10143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAGCTGTAAAGCTAATT	NA	False	NA	52	True	NA	NA	NA	16727266	16713414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727215
ENSMUSG00000079659.6_9151247_9169045_1	chr5	+	897	4	ISM	ENSMUSG00000079659.6	ENSMUST00000115365.3	1040	5	500	0	500	0	3prime_fragment	FALSE	canonical	3	350	junction_1	2.82842712474619	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTTTTTTTCCTCCTTT	NA	False	NA	10	True	AATAAA	-21	NA	9151246	9169045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_9151396_9166479_9166531_9167458_9167564_9168453
ENSMUSG00000079671.9_9618280_9646963_1	chr1	-	1900	14	NIC	ENSMUSG00000079671.9	novel	662	4	NA	NA	54354	12777	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCCAATCCGGTCGCTG	NA	False	NA	NA	False	NA	NA	NA	9646963	9618279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_9618377_9620131_9620170_9621941_9621983_9623147_9623202_9623542_9623698_9623847_9624045_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
ENSMUSG00000079710.11_15230438_15234796_1	chr17	-	871	6	NNC	ENSMUSG00000079710.11	novel	752	4	NA	NA	-4352	-2259	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	105	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCTCTTCCCCGGCTTCC	5955	False	NA	NA	False	NA	NA	NA	15234796	15230437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_15230534_15231134_15231304_15231891_15232032_15233209_15233312_15233933_15234024_15234522
ENSMUSG00000079845.9_72117951_72126116_1	chrX	-	1205	9	NNC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_7	103.438085345776	1031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126116	72117950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125195_72125590_72125674_72125964
ENSMUSG00000079845.9_72117951_72126116_2	chrX	-	1182	9	NNC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_7	100.580502583751	935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126116	72117950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125626_72125674_72125964
ENSMUSG00000080268.5_5091382_5099940_1	chr19	+	1757	9	ISM	ENSMUSG00000080268.5	ENSMUST00000116567.4	1388	10	0	5	0	-5	intron_retention	FALSE	canonical	3	224	junction_4	16.6691144035909	936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGTGTGGCTGATGTGT	2730	False	NA	3	True	AATAAA	-14	NA	5091381	5099940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_5091519_5095920_5096067_5096163_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020
ENSMUSG00000080268.5_5091382_5099940_2	chr19	+	1364	9	NNC	ENSMUSG00000080268.5	novel	1388	10	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	82.30545243178	1105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGTGTGGCTGATGTGT	2730	False	NA	3	True	AATAAA	-14	NA	5091381	5099940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_5091519_5095920_5096067_5096163_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099413
ENSMUSG00000080717.11_97798527_97811514_1	chr16	+	494	4	ISM	ENSMUSG00000080717.11	ENSMUST00000232308.2	669	6	-7	5801	0	314	5prime_fragment	FALSE	canonical	3	112	junction_3	8.80656320908194	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAATCAATATGGTAAAGC	NA	False	NA	NA	False	NA	NA	NA	97798526	97811514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318
ENSMUSG00000080717.11_97798527_97817956_1	chr16	+	1317	6	FSM	ENSMUSG00000080717.11	ENSMUST00000232308.2	669	6	-7	-641	0	0	multi-exon	FALSE	canonical	2	6	junction_4	50.8409283943557	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	14	True	NA	NA	NA	97798526	97817956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318_97811369_97816865_97816920_97817041
ENSMUSG00000080717.11_97798527_97832638_1	chr16	+	487	4	NIC	ENSMUSG00000080717.11	novel	546	5	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	2	6	junction_2	56.5822901229312	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTAGCTACATTT	NA	False	NA	NA	False	NA	NA	NA	97798526	97832638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_97798637_97809828_97809956_97816865_97816920_97832442
ENSMUSG00000080717.11_97798527_97832638_2	chr16	+	494	4	NIC	ENSMUSG00000080717.11	novel	546	5	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	57.6945982451275	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTAGCTACATTT	NA	False	NA	NA	False	NA	NA	NA	97798526	97832638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_97798637_97809828_97809956_97810143_97810205_97832442
ENSMUSG00000081355.2_94520066_94665453_1	chr3	-	2519	12	Fusion	ENSMUSG00000081355.2_ENSMUSG00000005968.15	novel	2555	12	NA	NA	-30	0	multi-exon	FALSE	non_canonical	3	14	junction_10	28.4119634911332	214	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCCCCGTGGGTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	94665453	94520065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94629191_94629282_94630124_94630212_94640266_94640369_94665341
ENSMUSG00000081357.2_73987658_73995953_1	chrX	+	1160	9	NNC	ENSMUSG00000081357.2	novel	648	7	NA	NA	-911	303	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_7	23.0867927612304	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGGATGAGTCAT	NA	False	NA	24	True	AATAAA	-16	NA	73987657	73995953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_73987753_73988067_73988151_73988537_73988666_73989350_73989420_73991236_73991355_73992188_73992289_73993476_73993576_73995367_73995464_73995581
ENSMUSG00000081443.3_101729898_101730637_1	chrX	-	438	3	NNC	ENSMUSG00000081443.3	novel	337	3	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	37	783	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTTCTTTGACTGTGTG	3568	False	NA	NA	False	AATAAA	-16	NA	101730637	101729897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_101730044_101730156_101730354_101730542
ENSMUSG00000081590.2_176855284_176864775_1	chr2	-	452	3	NNC	ENSMUSG00000081590.2	novel	408	4	NA	NA	-112	3799	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3	150	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGGCTCATGCGCAGAT	NA	False	NA	NA	False	NA	NA	NA	176864775	176855283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_176855560_176860529_176860591_176864660
ENSMUSG00000081949.4_174934683_174951897_1	chr2	-	1281	3	NNC	ENSMUSG00000081949.4	novel	401	4	NA	NA	-89	11564	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	1.5	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGTGCTTCTCAAAACAT	NA	False	NA	NA	False	AATAAA	-16	NA	174951897	174934682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_174935811_174947682_174947744_174951805
ENSMUSG00000081999.4_41877138_41878878_1	chr2	-	1031	2	NNC	ENSMUSG00000081999.4	novel	662	2	NA	NA	-37	347	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	699	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	41878878	41877137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_41878015_41878724
ENSMUSG00000081999.4_41877138_41878878_3	chr2	-	1032	2	NNC	ENSMUSG00000081999.4	novel	662	2	NA	NA	-37	347	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	767	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	41878878	41877137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_41878022_41878730
ENSMUSG00000081999.4_41877138_41878878_4	chr2	-	1035	2	NNC	ENSMUSG00000081999.4	novel	662	2	NA	NA	-37	347	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	947	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	41878878	41877137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_41878016_41878721
ENSMUSG00000082018.3_138576636_138615253_1	chrX	-	2259	3	Fusion	ENSMUSG00000098559.3_ENSMUSG00000082018.3	novel	1004	2	NA	NA	-23	200	multi-exon	FALSE	canonical	0	0	junction_1	0	8614	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTTCACAAAAGTCTAGAG	NA	False	NA	NA	False	AATAAA	-14	NA	138615253	138576635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chrX_-_138577362_138577761_138578376_138614334
ENSMUSG00000082082.2_145136836_145178235_1	chr4	+	2508	4	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	0	1909	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	47.2040487905669	2425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145136835	145178235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_145136997_145138756_145138851_145173287_145173342_145176036
ENSMUSG00000082082.2_145159007_145178235_1	chr4	+	2398	3	Fusion	ENSMUSG00000085101.8_ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14303	777	multi-exon	FALSE	non_canonical	0	0	junction_1	48.5	2249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145159006	145178235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr4_+_145159152_145173287_145173342_145176036
ENSMUSG00000082317.3_95401778_95529115_1	chrX	-	1845	3	NNC	ENSMUSG00000082317.3	novel	481	2	NA	NA	-125828	532	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	206481	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGCAGCAGAAGAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	95529115	95401777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_95402425_95402924_95403433_95528425
ENSMUSG00000082317.3_95401778_95529115_2	chrX	-	1857	3	NNC	ENSMUSG00000082317.3	novel	481	2	NA	NA	-125828	532	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	206619	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGCAGCAGAAGAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	95529115	95401777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_95402425_95402924_95403445_95528425
ENSMUSG00000082354.2_107448883_107452502_1	chrX	+	607	3	NNC	ENSMUSG00000082354.2	novel	820	2	NA	NA	-411	2128	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTATCTGTTTTTATTTG	NA	False	NA	NA	False	AGTAAA	-24	NA	107448882	107452502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_107448987_107449207_107449378_107452169
ENSMUSG00000082765.4_176802701_176821174_1	chr2	-	625	4	NNC	ENSMUSG00000082765.4	novel	914	3	NA	NA	-1672	14555	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	39.8525058462103	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATTTAGGTCGTTTCTT	NA	False	NA	-4	True	AATAAA	-17	NA	176821174	176802700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_176803028_176819124_176819186_176819376_176819504_176821064
ENSMUSG00000082926.4_68649102_68649893_1	chrX	-	671	2	Genic_Genomic	ENSMUSG00000082926.4	novel	750	1	NA	NA	-42	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTTTAAGAGCAACAAATA	NA	False	NA	NA	False	NA	NA	NA	68649893	68649101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chrX_-_68649592_68649712
ENSMUSG00000083534.2_37279000_37281534_1	chr17	-	908	4	NNC	ENSMUSG00000083534.2	novel	1034	5	NA	NA	754	1087	at_least_one_novel_splicesite	FALSE	canonical	3	60	junction_1	45.0653845971483	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTGGATTCTATTATTT	NA	False	NA	NA	False	NA	NA	NA	37281534	37278999	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_37279193_37280098_37280210_37280331_37280614_37281212
ENSMUSG00000083626.2_139239446_139240074_1	chr7	-	548	2	Genic_Genomic	ENSMUSG00000083626.2	novel	468	1	NA	NA	-3	158	multi-exon	FALSE	non_canonical	0	0	junction_1	0	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAACTTGGA	NA	False	NA	NA	False	AATAAA	-30	NA	139240074	139239445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_139239700_139239780
ENSMUSG00000083669.6_29653312_29665195_1	chr7	-	1007	5	Fusion	ENSMUSG00000083669.6_ENSMUSG00000059975.16	novel	1278	7	NA	NA	-205	11331	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1599	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAAGTGCTACCCTGCGCC	NA	False	NA	NA	False	NA	NA	NA	29665195	29653311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr7_-_29653382_29656384_29656460_29660317_29660445_29662570_29662667_29664556
ENSMUSG00000083669.6_29664495_29665042_1	chr7	-	493	2	Genic_Genomic	ENSMUSG00000083669.6	novel	348	1	NA	NA	-52	148	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1210	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAGTGTGGACATAACCC	NA	False	NA	NA	False	AATAAA	-42	NA	29665042	29664494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_29664712_29664766
ENSMUSG00000083669.6_29664495_29665042_2	chr7	-	403	2	Genic_Genomic	ENSMUSG00000083669.6	novel	348	1	NA	NA	-52	148	multi-exon	FALSE	non_canonical	0	0	junction_1	0	662	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAGTGTGGACATAACCC	NA	False	NA	NA	False	AATAAA	-42	NA	29665042	29664494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_29664729_29664873
ENSMUSG00000083669.6_29664495_29665042_3	chr7	-	496	2	Genic_Genomic	ENSMUSG00000083669.6	novel	348	1	NA	NA	-52	148	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1215	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAGTGTGGACATAACCC	NA	False	NA	NA	False	AATAAA	-42	NA	29665042	29664494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_29664710_29664761
ENSMUSG00000083773.5_28823429_28824694_1	chr2	-	1104	2	Genic_Genomic	ENSMUSG00000083773.5	novel	1000	1	NA	NA	-73	193	multi-exon	FALSE	canonical	0	0	junction_1	0	5353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAAATGTGA	NA	False	NA	NA	False	AATAAA	-27	NA	28824694	28823428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_-_28824337_28824498
ENSMUSG00000083844.9_5712150_5730623_1	chr11	+	572	3	FSM	ENSMUSG00000083844.9	ENSMUST00000137510.8	1846	3	21	1253	0	-1253	multi-exon	FALSE	canonical	3	68	junction_2	16.5	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAGCAGACTGTGAGTCA	NA	False	NA	9	True	NA	NA	NA	5712149	5730623	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_5712241_5715508_5715572_5730205
ENSMUSG00000083844.9_5712150_5730623_2	chr11	+	836	5	ISM	ENSMUSG00000083844.9	ENSMUST00000142942.8	1840	7	0	4087	0	-1253	5prime_fragment	FALSE	canonical	3	13	junction_2	33.1313673125635	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAGCAGACTGTGAGTCA	NA	False	NA	9	True	NA	NA	NA	5712149	5730623	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_5712241_5715508_5715572_5718885_5719073_5719166_5719244_5730205
ENSMUSG00000083844.9_5712150_5734710_1	chr11	+	1079	4	NIC	ENSMUSG00000083844.9	novel	1840	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	12	junction_3	36.7362975210561	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATTGACATTTAAGTTTC	NA	False	NA	NA	False	AATAAA	-23	NA	5712149	5734710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_5712241_5715508_5715572_5730205_5730312_5733891
ENSMUSG00000083899.3_77184270_77186190_1	chr11	+	1720	2	NNC	ENSMUSG00000083899.3	novel	2255	2	NA	NA	0	-534	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	3176	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGGAAAAGAAGAAACAGGA	NA	False	NA	NA	False	NA	NA	NA	77184269	77186190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_77185699_77185899
ENSMUSG00000083899.3_77185137_77186190_1	chr11	+	854	2	NNC	ENSMUSG00000083899.3	novel	2255	2	NA	NA	867	-534	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	102	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGGAAAAGAAGAAACAGGA	NA	False	NA	NA	False	NA	NA	NA	77185136	77186190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_77185704_77185903
ENSMUSG00000083899.3_77185137_77187252_1	chr11	+	1910	2	NNC	ENSMUSG00000083899.3	novel	2255	2	NA	NA	867	528	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	970	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGAGTTGCAGGTGGCCA	NA	False	NA	NA	False	GATAAA	-37	NA	77185136	77187252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_77185691_77185896
ENSMUSG00000083899.3_77185137_77187252_3	chr11	+	1916	2	NNC	ENSMUSG00000083899.3	novel	2255	2	NA	NA	867	528	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1317	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGAGTTGCAGGTGGCCA	NA	False	NA	NA	False	GATAAA	-37	NA	77185136	77187252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_77185704_77185903
ENSMUSG00000083899.3_77185137_77187252_4	chr11	+	1915	2	NNC	ENSMUSG00000083899.3	novel	2255	2	NA	NA	867	528	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1926	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGAGTTGCAGGTGGCCA	NA	False	NA	NA	False	GATAAA	-37	NA	77185136	77187252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_77185699_77185899
ENSMUSG00000084009.2_37389187_37395007_1	chrX	+	581	5	NNC	ENSMUSG00000084009.2	novel	806	6	NA	NA	3442	102	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4.84767985741633	162	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCCCCATGTGTCTTC	NA	False	NA	NA	False	AATAAA	-15	NA	37389186	37395007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_37389322_37389479_37389510_37390586_37390738_37391584_37391631_37394788
ENSMUSG00000084102.3_13848738_13870883_1	chr7	-	471	3	NNC	ENSMUSG00000084102.3	novel	428	3	NA	NA	4046	20609	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	317	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGAGTTAAGTCAAGTTT	NA	False	NA	NA	False	NA	NA	NA	13870883	13848737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_13848948_13869337_13869405_13870689
ENSMUSG00000084106.5_86836515_86837425_1	chr1	-	638	2	Genic_Genomic	ENSMUSG00000084106.5	novel	891	1	NA	NA	-20	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGTTAACCTAATTAAACA	NA	False	NA	NA	False	NA	NA	NA	86837425	86836514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_-_86836989_86837261
ENSMUSG00000084106.5_86836515_86837425_2	chr1	-	836	2	Genic_Genomic	ENSMUSG00000084106.5	novel	891	1	NA	NA	-20	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGTTAACCTAATTAAACA	NA	False	NA	NA	False	NA	NA	NA	86837425	86836514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_-_86837029_86837103
ENSMUSG00000084106.5_86836515_86837425_3	chr1	-	527	2	Genic_Genomic	ENSMUSG00000084106.5	novel	891	1	NA	NA	-20	0	multi-exon	FALSE	canonical	2	40	junction_1	0	993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGTTAACCTAATTAAACA	NA	False	NA	NA	False	NA	NA	NA	86837425	86836514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_-_86836834_86837217
ENSMUSG00000084762.2_135488444_135493987_1	chr2	+	523	4	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2383	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	318.937123723296	2440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488443	135493987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_135488613_135490846_135490892_135491052_135491123_135493748
ENSMUSG00000084762.2_135488444_135493987_2	chr2	+	525	6	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2383	4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	289.531621761769	8625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488443	135493987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_135488469_135488964_135489065_135490846_135490892_135491052_135491123_135493417_135493482_135493766
ENSMUSG00000084762.2_135488444_135493987_3	chr2	+	703	6	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2383	4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	263.117160215749	4025	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488443	135493987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_135488613_135490846_135490892_135491052_135491123_135492537_135492672_135493417_135493482_135493766
ENSMUSG00000084762.2_135488444_135493987_4	chr2	+	569	5	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2383	4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	294.653504136638	9006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488443	135493987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_135488613_135490846_135490892_135491052_135491123_135493417_135493482_135493766
ENSMUSG00000084762.2_135488444_135493987_5	chr2	+	538	4	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2383	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	318.937123723296	2253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488443	135493987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_135488613_135490846_135490892_135491052_135491123_135493733
ENSMUSG00000084762.2_135490827_135493987_1	chr2	+	406	4	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	289.483831826389	7752	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135490826	135493987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_135490892_135491052_135491123_135493417_135493478_135493776
ENSMUSG00000084771.9_150076220_150108080_2	chrX	-	616	4	NNC	ENSMUSG00000084771.9	novel	676	4	NA	NA	-13678	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	1.88561808316413	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCAGTATCTTCTTGTC	NA	False	NA	NA	False	ATTAAA	-14	NA	150108080	150076219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_150076491_150076760_150076884_150078466_150078569_150107960
ENSMUSG00000084771.9_150097751_150108055_1	chrX	-	482	2	NNC	ENSMUSG00000084771.9	novel	3292	3	NA	NA	-13653	-1422	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGCACATTCTTTTCTCA	NA	False	NA	NA	False	NA	NA	NA	150108055	150097750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_150098138_150107960
ENSMUSG00000084786.10_20556117_20558073_1	chr9	+	570	4	FSM	ENSMUSG00000084786.10	ENSMUST00000154429.9	2511	4	1943	-2	0	0	multi-exon	FALSE	canonical	3	1046	junction_3	4.78423336480244	851	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGCTGTCATACTTGT	NA	False	NA	18	True	AATAAA	-15	NA	20556116	20558073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_20556190_20556488_20556786_20556917_20556956_20557911
ENSMUSG00000084786.10_20556117_20558073_2	chr9	+	408	4	NNC	ENSMUSG00000084786.10	novel	489	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	532.355770764877	1329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGCTGTCATACTTGT	NA	False	NA	18	True	AATAAA	-15	NA	20556116	20558073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_20556190_20556488_20556556_20556701_20556786_20557889
ENSMUSG00000084786.10_20556117_20558073_3	chr9	+	444	5	FSM	ENSMUSG00000084786.10	ENSMUST00000161486.8	794	5	-13	363	0	0	multi-exon	FALSE	canonical	3	14	junction_3	472.738828530088	8381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGCTGTCATACTTGT	NA	False	NA	18	True	AATAAA	-15	NA	20556116	20558073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556897_20556956_20557911
ENSMUSG00000084799.8_63182755_63215849_1	chr1	+	2687	19	Genic_Genomic	ENSMUSG00000084799.8	novel	1576	4	NA	NA	28856	18400	multi-exon	FALSE	non_canonical	0	0	junction_1	0	672	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCCGACCTGGAGGACGG	4284	False	NA	NA	False	NA	NA	NA	63182754	63215849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215586
ENSMUSG00000084835.2_98328534_98329817_1	chr11	+	741	4	Fusion	ENSMUSG00000084835.2_ENSMUSG00000062312.6	novel	760	2	NA	NA	-329	-55	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4442	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAGTCACGTGGGGGGCG	2226	False	NA	NA	False	NA	NA	NA	98328533	98329817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr11_+_98328972_98329062_98329129_98329467_98329571_98329683
ENSMUSG00000084835.2_98328534_98329817_2	chr11	+	737	4	Fusion	ENSMUSG00000084835.2_ENSMUSG00000062312.6	novel	760	2	NA	NA	-329	-55	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2532	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAGTCACGTGGGGGGCG	2226	False	NA	NA	False	NA	NA	NA	98328533	98329817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr11_+_98328962_98329062_98329140_98329472_98329571_98329683
ENSMUSG00000084835.2_98328534_98329817_4	chr11	+	736	4	Fusion	ENSMUSG00000084835.2_ENSMUSG00000062312.6	novel	760	2	NA	NA	-329	-55	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4226	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAGTCACGTGGGGGGCG	2226	False	NA	NA	False	NA	NA	NA	98328533	98329817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr11_+_98328972_98329062_98329140_98329472_98329571_98329694
ENSMUSG00000084950.8_87976088_88022182_1	chr6	+	2079	6	Genic_Genomic	ENSMUSG00000084950.8	novel	815	3	NA	NA	17423	39729	multi-exon	FALSE	non_canonical	0	0	junction_1	0	583	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAAAGCTCCGGCCTTGCT	NA	False	NA	NA	False	NA	NA	NA	87976087	88022182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_87977513_87981152_87981282_87981974_87982194_87989288_87989406_87990619_87990681_88022054
ENSMUSG00000084950.8_87976088_88022252_1	chr6	+	2152	6	Genic_Genomic	ENSMUSG00000084950.8	novel	815	3	NA	NA	17423	39799	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1983	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGACGCCAGGGTTGGAG	NA	False	NA	NA	False	NA	NA	NA	87976087	88022252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990674_88022054
ENSMUSG00000084950.8_87976088_88022252_2	chr6	+	2246	7	Genic_Genomic	ENSMUSG00000084950.8	novel	815	3	NA	NA	17423	39799	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1588	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGACGCCAGGGTTGGAG	NA	False	NA	NA	False	NA	NA	NA	87976087	88022252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_87992613_87992701_88022054
ENSMUSG00000084950.8_87976425_88022182_1	chr6	+	1752	6	Genic_Genomic	ENSMUSG00000084950.8	novel	815	3	NA	NA	17760	39729	multi-exon	FALSE	non_canonical	0	0	junction_1	0	333	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAAAGCTCCGGCCTTGCT	NA	False	NA	NA	False	NA	NA	NA	87976424	88022182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
ENSMUSG00000084950.8_87976425_88022252_1	chr6	+	1909	7	Genic_Genomic	ENSMUSG00000084950.8	novel	815	3	NA	NA	17760	39799	multi-exon	FALSE	non_canonical	0	0	junction_1	0	135	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGACGCCAGGGTTGGAG	NA	False	NA	NA	False	NA	NA	NA	87976424	88022252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_87992613_87992701_88022054
ENSMUSG00000084957.4_53919441_53932620_2	chr19	-	701	4	NNC	ENSMUSG00000084957.4	novel	662	4	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	86.1871348997182	966	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGGGCTTGTACACTAC	NA	False	NA	NA	False	AATAAA	-17	NA	53932620	53919440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_53919934_53920560_53920637_53931896_53931995_53932586
ENSMUSG00000084957.4_53919441_53932909_1	chr19	-	1006	4	FSM	ENSMUSG00000084957.4	ENSMUST00000236370.2	662	4	-250	-94	0	0	multi-exon	FALSE	canonical	3	94	junction_3	45.8427263102398	1660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGGGCTTGTACACTAC	NA	False	NA	NA	False	AATAAA	-17	NA	53932909	53919440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_53919934_53920560_53920637_53931896_53932011_53932586
ENSMUSG00000084957.4_53919441_53932909_2	chr19	-	729	4	NNC	ENSMUSG00000084957.4	novel	2043	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	84.3893094861876	716	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGGGCTTGTACACTAC	NA	False	NA	NA	False	AATAAA	-17	NA	53932909	53919440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_53919934_53920560_53920637_53931896_53931995_53932847
ENSMUSG00000084970.2_53553585_53567818_1	chr4	-	2779	4	NIC	ENSMUSG00000084970.2	novel	1060	2	NA	NA	-3121	9398	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCCACTCGCAGAGCGT	NA	False	NA	NA	False	NA	NA	NA	53567818	53553584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_53553624_53560914_53561152_53563140_53563222_53565396
ENSMUSG00000084970.2_53553585_53622478_1	chr4	-	1241	4	NIC	ENSMUSG00000084970.2	novel	1060	2	NA	NA	-57781	9398	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCCACTCGCAGAGCGT	9574	False	NA	NA	False	NA	NA	NA	53622478	53553584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_53553624_53560914_53561152_53563140_53563222_53621594
ENSMUSG00000084974.2_26932638_26957370_1	chr7	-	2095	15	NNC	ENSMUSG00000084974.2	novel	2130	2	NA	NA	-13	16050	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTCAGCGCCCCTTTCG	NA	False	NA	NA	False	NA	NA	NA	26957370	26932637	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_26932708_26932889_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949711_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
ENSMUSG00000084984.9_113113041_113167580_1	chr7	-	1824	13	Genic_Genomic	ENSMUSG00000084984.9	novel	480	4	NA	NA	-3386	16655	multi-exon	FALSE	non_canonical	0	0	junction_1	0	160	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCGACAGCGGTGCGCCC	NA	False	NA	NA	False	NA	NA	NA	113167580	113113040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_113113145_113125194_113125246_113138479_113138674_113139742_113139919_113146608_113146789_113149172_113149351_113150279_113150325_113150441_113150561_113151141_113151210_113152848_113153021_113160582_113160713_113165591_113165720_113167301
ENSMUSG00000084984.9_113113041_113170092_1	chr7	-	4336	13	Genic_Genomic	ENSMUSG00000084984.9	novel	480	4	NA	NA	-5898	16655	multi-exon	FALSE	non_canonical	0	0	junction_1	0	270	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCGACAGCGGTGCGCCC	NA	False	NA	NA	False	NA	NA	NA	113170092	113113040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_113113145_113125194_113125246_113138479_113138674_113139742_113139919_113146608_113146789_113149172_113149351_113150279_113150325_113150441_113150561_113151141_113151210_113152848_113153021_113160582_113160713_113165591_113165720_113167301
ENSMUSG00000084990.2_36078424_36080697_1	chrX	+	879	2	FSM	ENSMUSG00000084990.2	ENSMUST00000154993.2	1035	2	0	156	0	-156	multi-exon	FALSE	non_canonical	0	0	junction_1	0	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGGATGAAGAGACTGGGG	NA	False	NA	NA	False	NA	NA	NA	36078423	36080697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_36078984_36080378
ENSMUSG00000084997.8_103710065_103716694_1	chr3	+	2135	4	NIC	ENSMUSG00000084997.8	novel	1235	4	NA	NA	-380	939	intron_retention	FALSE	non_canonical	0	0	junction_1	0	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCGGGGAGACAGACCCTAG	NA	False	NA	NA	False	NA	NA	NA	103710064	103716694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_103711372_103714709_103714893_103715387_103715554_103716215
ENSMUSG00000084998.2_36203569_36207995_1	chr17	+	1176	6	NIC	ENSMUSG00000084998.2	novel	2945	5	NA	NA	-4269	-15112	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	768	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCGGCGGGGGCCTCTGC	NA	False	NA	NA	False	NA	NA	NA	36203568	36207995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36207871
ENSMUSG00000084998.2_36203569_36207995_2	chr17	+	1109	6	NNC	ENSMUSG00000084998.2	novel	2945	5	NA	NA	-4269	-15112	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	234	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCGGCGGGGGCCTCTGC	NA	False	NA	NA	False	NA	NA	NA	36203568	36207995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_36203859_36203931_36204002_36205810_36205945_36206175_36206265_36206562_36206965_36207871
ENSMUSG00000084998.2_36208501_36220938_1	chr17	+	1409	13	Genic_Genomic	ENSMUSG00000084998.2	novel	2945	5	NA	NA	663	-2169	multi-exon	FALSE	non_canonical	0	0	junction_1	0	229	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGGACCAGACACGCCCCAC	NA	False	NA	NA	False	NA	NA	NA	36208500	36220938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_+_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUSG00000084998.2_36221278_36227281_1	chr17	+	1067	7	NNC	ENSMUSG00000084998.2	novel	2945	5	NA	NA	13440	4174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2426	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGGAAGAGCGACTGCGCA	NA	False	NA	NA	False	NA	NA	NA	36221277	36227281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225388_36225482_36225587_36225697_36227183
ENSMUSG00000084998.2_36221278_36227281_10	chr17	+	1060	7	NNC	ENSMUSG00000084998.2	novel	2945	5	NA	NA	13440	4174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2768	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGGAAGAGCGACTGCGCA	NA	False	NA	NA	False	NA	NA	NA	36221277	36227281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225383_36225482_36225587_36225685_36227183
ENSMUSG00000084998.2_36221278_36227281_2	chr17	+	1062	7	NNC	ENSMUSG00000084998.2	novel	2945	5	NA	NA	13440	4174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3428	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGGAAGAGCGACTGCGCA	NA	False	NA	NA	False	NA	NA	NA	36221277	36227281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_36221839_36222310_36222371_36223229_36223297_36225225_36225295_36225383_36225482_36225587_36225697_36227183
ENSMUSG00000084998.2_36221278_36227281_3	chr17	+	1063	7	NNC	ENSMUSG00000084998.2	novel	2945	5	NA	NA	13440	4174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3582	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGGAAGAGCGACTGCGCA	NA	False	NA	NA	False	NA	NA	NA	36221277	36227281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225383_36225482_36225587_36225697_36227192
ENSMUSG00000084998.2_36221278_36227281_4	chr17	+	1127	8	NNC	ENSMUSG00000084998.2	novel	2945	5	NA	NA	13440	4174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4479	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGGAAGAGCGACTGCGCA	NA	False	NA	NA	False	NA	NA	NA	36221277	36227281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_36221849_36222310_36222371_36223229_36223297_36224763_36224819_36225225_36225295_36225383_36225482_36225587_36225697_36227183
ENSMUSG00000084998.2_36221278_36227281_5	chr17	+	1072	7	NIC	ENSMUSG00000084998.2	novel	2945	5	NA	NA	13440	4174	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	9996	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGGAAGAGCGACTGCGCA	NA	False	NA	NA	False	NA	NA	NA	36221277	36227281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225383_36225482_36225587_36225697_36227183
ENSMUSG00000084998.2_36221278_36227281_6	chr17	+	1063	7	NNC	ENSMUSG00000084998.2	novel	2945	5	NA	NA	13440	4174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2292	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGGAAGAGCGACTGCGCA	NA	False	NA	NA	False	NA	NA	NA	36221277	36227281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_36221849_36222310_36222371_36223229_36223288_36225225_36225295_36225383_36225482_36225587_36225697_36227183
ENSMUSG00000084998.2_36221278_36227281_7	chr17	+	1063	7	NNC	ENSMUSG00000084998.2	novel	2945	5	NA	NA	13440	4174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	980	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGGAAGAGCGACTGCGCA	NA	False	NA	NA	False	NA	NA	NA	36221277	36227281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_36221849_36222310_36222371_36223229_36223297_36225225_36225282_36225379_36225482_36225587_36225697_36227183
ENSMUSG00000084998.2_36221278_36227281_8	chr17	+	1058	7	NNC	ENSMUSG00000084998.2	novel	2945	5	NA	NA	13440	4174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2316	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGGAAGAGCGACTGCGCA	NA	False	NA	NA	False	NA	NA	NA	36221277	36227281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_36221849_36222310_36222357_36223229_36223297_36225225_36225295_36225383_36225482_36225587_36225697_36227183
ENSMUSG00000084998.2_36221278_36227281_9	chr17	+	1005	6	NIC	ENSMUSG00000084998.2	novel	2945	5	NA	NA	13440	4174	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	518	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGGAAGAGCGACTGCGCA	NA	False	NA	NA	False	NA	NA	NA	36221277	36227281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_36221849_36222310_36222371_36225225_36225295_36225383_36225482_36225587_36225697_36227183
ENSMUSG00000085039.3_3632991_3644228_1	chr7	-	1880	14	Genic_Genomic	ENSMUSG00000085039.3	novel	1788	5	NA	NA	2021	2122	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1696	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTTACTTGCCGCCGAT	NA	False	NA	NA	False	AAGAAA	-33	NA	3644228	3632990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_3633056_3633556_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641629_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
ENSMUSG00000085072.2_115294583_115301745_1	chr11	-	826	6	NNC	ENSMUSG00000085072.2	novel	1052	2	NA	NA	-2605	2829	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3189	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCGGTGCTCACTCTTCC	NA	False	NA	NA	False	NA	NA	NA	115301745	115294582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_115294787_115297376_115297414_115300305_115300356_115300885_115300969_115301057_115301228_115301463
ENSMUSG00000085072.2_115294583_115301745_2	chr11	-	925	5	NIC	ENSMUSG00000085072.2	novel	1052	2	NA	NA	-2605	2829	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1648	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCGGTGCTCACTCTTCC	NA	False	NA	NA	False	NA	NA	NA	115301745	115294582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_115294787_115297376_115297414_115300305_115300366_115300885_115301228_115301463
ENSMUSG00000085072.2_115294583_115301745_3	chr11	-	963	6	NIC	ENSMUSG00000085072.2	novel	1052	2	NA	NA	-2605	2829	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	418	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCGGTGCTCACTCTTCC	NA	False	NA	NA	False	NA	NA	NA	115301745	115294582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_115294914_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
ENSMUSG00000085072.2_115294583_115301745_4	chr11	-	826	6	NNC	ENSMUSG00000085072.2	novel	1052	2	NA	NA	-2605	2829	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3661	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCGGTGCTCACTCTTCC	NA	False	NA	NA	False	NA	NA	NA	115301745	115294582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_115294787_115297376_115297414_115300315_115300366_115300885_115300969_115301057_115301228_115301463
ENSMUSG00000085072.2_115294583_115301745_5	chr11	-	825	6	NNC	ENSMUSG00000085072.2	novel	1052	2	NA	NA	-2605	2829	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4504	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCGGTGCTCACTCTTCC	NA	False	NA	NA	False	NA	NA	NA	115301745	115294582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_115294787_115297376_115297414_115300305_115300366_115300896_115300969_115301057_115301228_115301463
ENSMUSG00000085085.3_128943890_128951776_1	chr4	-	1146	3	NNC	ENSMUSG00000085085.3	novel	1009	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	2	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCCCTTATGACTTACAC	NA	False	NA	-18	True	AATAAA	-16	NA	128951776	128943889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_128944703_128944860_128944998_128951580
ENSMUSG00000085101.8_145136836_145159452_2	chr4	+	671	3	FSM	ENSMUSG00000085101.8	ENSMUST00000143127.8	375	3	21	-317	0	317	multi-exon	FALSE	canonical	2	7	junction_2	48	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTGTGAGGGTGTCTTA	NA	False	NA	NA	False	AAAAAG	-4	NA	145136835	145159452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_145136997_145138756_145138851_145159036
ENSMUSG00000085101.8_145136836_145180372_1	chr4	+	710	4	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	0	4046	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_3	40.7458245986288	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTTATCCTGATTTTT	NA	False	NA	21	True	ATTAAA	-17	NA	145136835	145180372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_145136997_145138756_145138851_145176036_145176136_145180016
ENSMUSG00000085103.4_175775732_175863494_1	chr2	-	669	4	NNC	ENSMUSG00000085103.4	novel	474	3	NA	NA	-3835	82084	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.1197726417986	386	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCTGGTTGTTTGAAATA	NA	False	NA	NA	False	TTTAAA	-7	NA	175863494	175775731	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_175776121_175859274_175859336_175859528_175859656_175863402
ENSMUSG00000085103.4_175845880_175863507_1	chr2	-	1419	4	NNC	ENSMUSG00000085103.4	novel	474	3	NA	NA	-3848	11936	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	6.16441400296898	187	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGCTTCTCAAAACATAA	NA	False	NA	NA	False	AATAAA	-18	NA	175863507	175845879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_175847006_175859274_175859336_175859528_175859656_175863402
ENSMUSG00000085111.4_85774501_85793687_1	chr10	+	1999	12	Genic_Genomic	ENSMUSG00000085111.4	novel	483	3	NA	NA	9863	11617	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2213	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGGGAAGATGGCAAGC	NA	False	NA	NA	False	NA	NA	NA	85774500	85793687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787228_85787319_85789300_85789369_85791582_85791662_85793478
ENSMUSG00000085111.4_85774501_85793687_2	chr10	+	1941	11	Genic_Genomic	ENSMUSG00000085111.4	novel	483	3	NA	NA	9863	11617	multi-exon	FALSE	non_canonical	0	0	junction_1	0	497	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGGGAAGATGGCAAGC	NA	False	NA	NA	False	NA	NA	NA	85774500	85793687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85791582_85791662_85793478
ENSMUSG00000085111.4_85774501_85793687_3	chr10	+	2004	12	Genic_Genomic	ENSMUSG00000085111.4	novel	483	3	NA	NA	9863	11617	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2857	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGGGAAGATGGCAAGC	NA	False	NA	NA	False	NA	NA	NA	85774500	85793687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779683_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
ENSMUSG00000085111.4_85774501_85793687_4	chr10	+	1314	10	Genic_Genomic	ENSMUSG00000085111.4	novel	483	3	NA	NA	9863	11617	multi-exon	FALSE	non_canonical	0	0	junction_1	0	183	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGGGAAGATGGCAAGC	NA	False	NA	NA	False	NA	NA	NA	85774500	85793687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_85774661_85779213_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
ENSMUSG00000085134.2_104141728_104149975_1	chr11	-	580	5	NNC	ENSMUSG00000085134.2	novel	466	5	NA	NA	212	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATTAAAAATAAATAATTA	NA	False	NA	NA	False	NA	NA	NA	104149975	104141727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_104141783_104142324_104142446_104144108_104144251_104144351_104144410_104149771
ENSMUSG00000085152.2_88883610_88887388_1	chr11	-	646	3	NNC	ENSMUSG00000085152.2	novel	581	2	NA	NA	-18	256	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	9.5	207	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTAGTATTTTTCCTAT	9021	False	NA	NA	False	AATACA	-28	NA	88887388	88883609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_88883705_88883913_88884304_88887227
ENSMUSG00000085152.2_88883698_88887388_1	chr11	-	767	2	FSM	ENSMUSG00000085152.2	ENSMUST00000128078.2	581	2	-18	-168	-18	168	multi-exon	FALSE	canonical	3	19	junction_1	0	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTCTTATGTACCTTTT	9021	False	NA	NA	False	NA	NA	NA	88887388	88883697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_88884304_88887227
ENSMUSG00000085156.9_6475591_6478766_1	chr11	-	592	4	NNC	ENSMUSG00000085156.9	novel	611	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	208.418382639877	4186	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTGATCGGGTTTGA	NA	False	NA	-1	True	NA	NA	NA	6478766	6475590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_6475812_6476354_6476438_6478305_6478375_6478547
ENSMUSG00000085166.2_34795880_34815270_1	chr5	+	2321	17	Genic_Genomic	ENSMUSG00000085166.2	novel	785	2	NA	NA	-12182	5449	multi-exon	FALSE	non_canonical	0	0	junction_1	0	711	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTATACTCCCCAAAGCG	NA	False	NA	NA	False	NA	NA	NA	34795879	34815270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_+_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218
ENSMUSG00000085166.2_34807889_34817492_1	chr5	+	1175	8	Genic_Genomic	ENSMUSG00000085166.2	novel	785	2	NA	NA	-173	7671	multi-exon	FALSE	non_canonical	0	0	junction_1	0	448	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGATGAGTGCGTCAGCTTC	6517	False	NA	NA	False	NA	NA	NA	34807888	34817492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_+_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
ENSMUSG00000085169.3_91486414_91525511_3	chr16	+	1331	12	Genic_Genomic	ENSMUSG00000085169.3	novel	877	5	NA	NA	615	12981	multi-exon	FALSE	non_canonical	0	0	junction_1	0	360	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCGCCTTCTTGGGTCCA	1111	False	NA	NA	False	NA	NA	NA	91486413	91525511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91514291_91514364_91525445
ENSMUSG00000085169.3_91486414_91525511_4	chr16	+	1409	13	Genic_Genomic	ENSMUSG00000085169.3	novel	877	5	NA	NA	615	12981	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6531	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCGCCTTCTTGGGTCCA	1111	False	NA	NA	False	NA	NA	NA	91486413	91525511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000085169.3_91486494_91525511_1	chr16	+	1342	13	Genic_Genomic	ENSMUSG00000085169.3	novel	877	5	NA	NA	695	12981	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1446	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCGCCTTCTTGGGTCCA	1191	False	NA	NA	False	NA	NA	NA	91486493	91525511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_91486804_91487591_91487638_91489473_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUSG00000085169.3_91486494_91525511_2	chr16	+	1251	12	Genic_Genomic	ENSMUSG00000085169.3	novel	877	5	NA	NA	695	12981	multi-exon	FALSE	non_canonical	0	0	junction_1	0	219	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCGCCTTCTTGGGTCCA	1191	False	NA	NA	False	NA	NA	NA	91486493	91525511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91514291_91514364_91525445
ENSMUSG00000085175.8_82670427_82671891_1	chr11	-	592	3	NNC	ENSMUSG00000085175.8	novel	686	3	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	1	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTCATTATGTCTTTG	NA	False	NA	4	True	AATAAA	-22	NA	82671891	82670426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_82670762_82670960_82671125_82671798
ENSMUSG00000085175.8_82670427_82671891_2	chr11	-	908	2	FSM	ENSMUSG00000085175.8	ENSMUST00000136051.2	655	2	-23	-230	-23	0	multi-exon	FALSE	canonical	3	22	junction_1	0	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTCATTATGTCTTTG	NA	False	NA	4	True	AATAAA	-22	NA	82671891	82670426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_82671125_82671681
ENSMUSG00000085184.10_172348703_172373437_1	chr1	-	1816	12	NIC	ENSMUSG00000085184.10	novel	599	3	NA	NA	4799	16997	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCTGACGCGTTACCATA	4553	False	NA	NA	False	NA	NA	NA	172373437	172348702	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_172348749_172355356_172355483_172357376_172357520_172359647_172359793_172360097_172360269_172361512_172361692_172362777_172362908_172366045_172366193_172368053_172368168_172368751_172368946_172372658_172372884_172373241
ENSMUSG00000085208.4_86092196_86100373_1	chr11	+	2778	2	FSM	ENSMUSG00000085208.4	ENSMUST00000128960.2	4423	2	0	1645	0	-1645	multi-exon	FALSE	canonical	3	24	junction_1	0	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCGTCTCTGTTTCTGTG	NA	False	NA	9	True	NA	NA	NA	86092195	86100373	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_86092379_86097778
ENSMUSG00000085236.4_84264262_84339091_1	chr7	+	1593	7	NIC	ENSMUSG00000085236.4	novel	1717	5	NA	NA	-74586	-86137	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	666	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTTTGGCTGCTCGG	NA	False	NA	NA	False	ATTAAA	-2	NA	84264261	84339091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84338953
ENSMUSG00000085241.8_132079245_132080944_2	chr4	-	378	3	NNC	ENSMUSG00000085241.8	novel	426	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	500.5	10718	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTGTGATTTAATGTG	NA	False	NA	-10	True	ATTAAA	-14	NA	132080944	132079244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_132079550_132079973_132080010_132080907
ENSMUSG00000085241.8_132079245_132080944_3	chr4	-	802	2	ISM	ENSMUSG00000028896.14	ENSMUST00000155129.2	507	6	-28	14111	-28	-12443	5prime_fragment	FALSE	canonical	3	1001	junction_1	0	13128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTGTGATTTAATGTG	NA	False	NA	-10	True	ATTAAA	-14	NA	132080944	132079244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_-_132080010_132080907
ENSMUSG00000085241.8_132079439_132080944_1	chr4	-	189	3	FSM	ENSMUSG00000085241.8	ENSMUST00000152943.8	437	3	53	195	0	-124	multi-exon	FALSE	canonical	3	959	junction_1	21	792	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTGGTAAATACATTTCT	NA	False	NA	NA	False	NA	NA	NA	132080944	132079438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132079555_132079973_132080010_132080907
ENSMUSG00000085242.2_96658703_96668346_1	chr11	+	2158	8	NIC	ENSMUSG00000085242.2	novel	791	2	NA	NA	1075	9251	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTCCTTCCGGGTGAGT	46	False	NA	NA	False	NA	NA	NA	96658702	96668346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96667793_96667888_96668280
ENSMUSG00000085242.2_96658703_96668346_2	chr11	+	2218	9	NIC	ENSMUSG00000085242.2	novel	791	2	NA	NA	1075	9251	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTCCTTCCGGGTGAGT	46	False	NA	NA	False	NA	NA	NA	96658702	96668346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96666199_96666260_96667793_96667888_96668280
ENSMUSG00000085262.2_96932421_96939817_1	chr11	-	1451	5	NIC	ENSMUSG00000085262.2	novel	946	3	NA	NA	2441	7096	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1249	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAAGTTCCCATGCGCGCT	5122	False	NA	NA	False	NA	NA	NA	96939817	96932420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_96932479_96935353_96935524_96937855_96938021_96938238_96938384_96938904
ENSMUSG00000085262.2_96932421_96940039_1	chr11	-	1673	5	NIC	ENSMUSG00000085262.2	novel	946	3	NA	NA	2219	7096	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1691	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAAGTTCCCATGCGCGCT	4900	False	NA	NA	False	NA	NA	NA	96940039	96932420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_96932479_96935353_96935524_96937855_96938021_96938238_96938384_96938904
ENSMUSG00000085278.2_117741530_117744530_1	chr4	+	980	7	Genic_Genomic	ENSMUSG00000085278.2	novel	338	2	NA	NA	712	1338	multi-exon	FALSE	non_canonical	0	0	junction_1	0	556	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGGCGCACGTGATGCGC	NA	False	NA	NA	False	NA	NA	NA	117741529	117744530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743589_117744366
ENSMUSG00000085278.2_117741530_117744530_10	chr4	+	1003	8	Genic_Genomic	ENSMUSG00000085278.2	novel	338	2	NA	NA	712	1338	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5784	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGGCGCACGTGATGCGC	NA	False	NA	NA	False	NA	NA	NA	117741529	117744530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_117741839_117742294_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744366
ENSMUSG00000085278.2_117741530_117744530_11	chr4	+	969	7	Genic_Genomic	ENSMUSG00000085278.2	novel	338	2	NA	NA	712	1338	multi-exon	FALSE	non_canonical	0	0	junction_1	0	199	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGGCGCACGTGATGCGC	NA	False	NA	NA	False	NA	NA	NA	117741529	117744530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_117741839_117742300_117742492_117742976_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744366
ENSMUSG00000085278.2_117741530_117744530_12	chr4	+	1070	8	Genic_Genomic	ENSMUSG00000085278.2	novel	338	2	NA	NA	712	1338	multi-exon	FALSE	non_canonical	0	0	junction_1	0	886	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGGCGCACGTGATGCGC	NA	False	NA	NA	False	NA	NA	NA	117741529	117744530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743909_117744366
ENSMUSG00000085278.2_117741530_117744530_2	chr4	+	992	8	Genic_Genomic	ENSMUSG00000085278.2	novel	338	2	NA	NA	712	1338	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4681	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGGCGCACGTGATGCGC	NA	False	NA	NA	False	NA	NA	NA	117741529	117744530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743269_117743343_117743472_117743557_117743786_117743836_117744366
ENSMUSG00000085278.2_117741530_117744530_3	chr4	+	963	7	Genic_Genomic	ENSMUSG00000085278.2	novel	338	2	NA	NA	712	1338	multi-exon	FALSE	non_canonical	0	0	junction_1	0	190	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGGCGCACGTGATGCGC	NA	False	NA	NA	False	NA	NA	NA	117741529	117744530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_117741839_117742300_117742510_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744366
ENSMUSG00000085278.2_117741530_117744530_4	chr4	+	984	7	Genic_Genomic	ENSMUSG00000085278.2	novel	338	2	NA	NA	712	1338	multi-exon	FALSE	non_canonical	0	0	junction_1	0	649	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGGCGCACGTGATGCGC	NA	False	NA	NA	False	NA	NA	NA	117741529	117744530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117744330
ENSMUSG00000085278.2_117741530_117744530_5	chr4	+	987	8	Genic_Genomic	ENSMUSG00000085278.2	novel	338	2	NA	NA	712	1338	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2884	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGGCGCACGTGATGCGC	NA	False	NA	NA	False	NA	NA	NA	117741529	117744530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744376
ENSMUSG00000085278.2_117741530_117744530_6	chr4	+	997	8	Genic_Genomic	ENSMUSG00000085278.2	novel	338	2	NA	NA	712	1338	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10893	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGGCGCACGTGATGCGC	NA	False	NA	NA	False	NA	NA	NA	117741529	117744530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744366
ENSMUSG00000085278.2_117741530_117744530_7	chr4	+	983	8	Genic_Genomic	ENSMUSG00000085278.2	novel	338	2	NA	NA	712	1338	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2229	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGGCGCACGTGATGCGC	NA	False	NA	NA	False	NA	NA	NA	117741529	117744530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743486_117743557_117743786_117743836_117744366
ENSMUSG00000085278.2_117741530_117744530_9	chr4	+	989	8	Genic_Genomic	ENSMUSG00000085278.2	novel	338	2	NA	NA	712	1338	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2813	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGGCGCACGTGATGCGC	NA	False	NA	NA	False	NA	NA	NA	117741529	117744530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_117741839_117742300_117742492_117742825_117742870_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744366
ENSMUSG00000085310.8_87000077_87013036_1	chr11	-	554	4	NIC	ENSMUSG00000085310.8	novel	1118	3	NA	NA	4695	12316	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCGCTGAGGCGCTTAAG	NA	False	NA	NA	False	NA	NA	NA	87013036	87000076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_87000131_87006970_87007017_87008493_87008671_87012759
ENSMUSG00000085337.2_91418281_91443829_1	chr16	+	3457	22	NIC	ENSMUSG00000085337.2	novel	2745	2	NA	NA	9925	23080	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCGGGGAATCCAGCGCG	2223	False	NA	NA	False	NA	NA	NA	91418280	91443829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443614
ENSMUSG00000085347.2_62176386_62185637_1	chr10	+	549	2	FSM	ENSMUSG00000085347.2	ENSMUST00000143122.2	1218	2	0	669	0	7	multi-exon	FALSE	canonical	3	18	junction_1	0	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGCCCCAAACTGTGGC	NA	False	NA	NA	False	NA	NA	NA	62176385	62185637	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_62176563_62185265
ENSMUSG00000085385.8_158197705_158203463_1	chr2	-	977	6	NIC	ENSMUSG00000085385.8	novel	933	6	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_3	23.4059821413245	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCAGTCTGCCTTTTAAA	8326	False	NA	-17	True	AATAAA	-12	NA	158203463	158197704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_158197962_158199117_158199184_158201101_158201353_158202383_158202520_158202862_158202991_158203324
ENSMUSG00000085385.8_158197705_158203463_2	chr2	-	914	6	NIC	ENSMUSG00000085385.8	novel	1046	7	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	30.9476978142155	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCAGTCTGCCTTTTAAA	8326	False	NA	-17	True	AATAAA	-12	NA	158203463	158197704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_158197962_158199117_158199184_158201101_158201353_158202446_158202520_158202862_158202991_158203324
ENSMUSG00000085395.2_141005750_141007125_1	chr4	+	497	3	NNC	ENSMUSG00000085395.2	novel	564	2	NA	NA	0	20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCCCTCCCCTCCCTGTCT	656	False	NA	NA	False	NA	NA	NA	141005749	141007125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_141005856_141006647_141007016_141007102
ENSMUSG00000085403.2_149828929_149858554_1	chr4	+	1271	7	Genic_Genomic	ENSMUSG00000085403.2	novel	876	2	NA	NA	-4046	24490	multi-exon	FALSE	non_canonical	0	0	junction_1	0	261	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCGAGGTCTTGAGCTCCG	NA	False	NA	NA	False	NA	NA	NA	149828928	149858554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_149829395_149833505_149833787_149836860_149836928_149838255_149838357_149840531_149840610_149846823_149847004_149858456
ENSMUSG00000085403.2_149828929_149861853_1	chr4	+	1465	8	Genic_Genomic	ENSMUSG00000085403.2	novel	876	2	NA	NA	-4046	27789	multi-exon	FALSE	non_canonical	0	0	junction_1	0	304	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGACAAGCAGGACACATC	NA	False	NA	NA	False	NA	NA	NA	149828928	149861853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_149829395_149833505_149833787_149836860_149836928_149838255_149838357_149840531_149840610_149846823_149847004_149860511_149860612_149861661
ENSMUSG00000085408.2_116449961_116454827_1	chr4	-	404	2	NNC	ENSMUSG00000085408.2	novel	2436	3	NA	NA	0	-3031	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACCGGTCTAGAGGAGTA	9385	False	NA	NA	False	AATAAA	-15	NA	116454827	116449960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_116450146_116454608
ENSMUSG00000085412.8_52079929_52084686_1	chr6	+	1024	2	ISM	ENSMUSG00000085412.8	ENSMUST00000155758.2	408	3	-54	4482	0	-4482	5prime_fragment	FALSE	canonical	3	220	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTCAATTCTCTTCATTT	778	False	NA	NA	False	TTTAAA	-5	NA	52079928	52084686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_+_52080017_52083750
ENSMUSG00000085412.8_52079929_52089553_1	chr6	+	581	4	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	0	45	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	93.688609529417	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGAAAGAAAGAAAGAAAG	778	False	NA	NA	False	NA	NA	NA	52079928	52089553	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_52080017_52083750_52083877_52088920_52089066_52089331
ENSMUSG00000085412.8_52079929_52090048_1	chr6	+	1076	4	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	0	540	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	93.688609529417	2130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTACACAACTAAGATCCA	778	False	NA	NA	False	AATAAA	-20	NA	52079928	52090048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_52080017_52083750_52083877_52088920_52089066_52089331
ENSMUSG00000085412.8_52079929_52090048_3	chr6	+	910	4	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	0	540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	91.2335221042987	2318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTACACAACTAAGATCCA	778	False	NA	NA	False	AATAAA	-20	NA	52079928	52090048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_52080017_52083750_52083877_52089331_52089479_52089499
ENSMUSG00000085412.8_52079929_52090048_4	chr6	+	1291	6	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	0	540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	49.5394792059828	1713	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTACACAACTAAGATCCA	778	False	NA	NA	False	AATAAA	-20	NA	52079928	52090048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_52080017_52082951_52083012_52083344_52083500_52083750_52083877_52088920_52089066_52089331
ENSMUSG00000085412.8_52079929_52090048_5	chr6	+	931	3	FSM	ENSMUSG00000085412.8	ENSMUST00000125374.8	391	3	0	-540	0	540	multi-exon	FALSE	canonical	3	144	junction_2	38	2435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTACACAACTAAGATCCA	778	False	NA	NA	False	AATAAA	-20	NA	52079928	52090048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_52080017_52083750_52083877_52089331
ENSMUSG00000085412.8_52079929_52091174_1	chr6	+	1066	3	FSM	ENSMUSG00000085412.8	ENSMUST00000189071.7	511	3	-45	-510	0	510	multi-exon	FALSE	canonical	3	13	junction_2	103.5	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAGTTTTTAAAATATTT	778	False	NA	NA	False	AATATA	-25	NA	52079928	52091174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_52080017_52083750_52083877_52090322
ENSMUSG00000085436.2_164753274_164761875_1	chr2	+	1258	3	NNC	ENSMUSG00000085436.2	novel	1127	2	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	1.5	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTTTTGGATACGGTGT	7240	False	NA	NA	False	NA	NA	NA	164753273	164761875	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_164753671_164756011_164756141_164761143
ENSMUSG00000085438.2_119424784_119428035_1	chr2	+	1428	2	ISM	ENSMUSG00000085438.2	ENSMUST00000147425.2	1381	3	6	3192	0	-3192	5prime_fragment	FALSE	canonical	3	428	junction_1	0	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCGAAGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	119424783	119428035	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_119424916_119426739
ENSMUSG00000085438.2_119424784_119430408_1	chr2	+	556	3	FSM	ENSMUSG00000085438.2	ENSMUST00000147425.2	1381	3	6	819	0	-819	multi-exon	FALSE	canonical	3	71	junction_2	178.5	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAAGTGTGGGTGACTTC	NA	False	NA	NA	False	TTTAAA	-27	NA	119424783	119430408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_119424916_119426739_119426824_119430068
ENSMUSG00000085438.2_119424784_119430408_2	chr2	+	725	3	FSM	ENSMUSG00000085438.2	ENSMUST00000153581.2	8300	3	0	7575	0	-819	multi-exon	FALSE	canonical	3	345	junction_2	41.5	350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAAGTGTGGGTGACTTC	NA	False	NA	NA	False	TTTAAA	-27	NA	119424783	119430408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_119424916_119426739_119426993_119430068
ENSMUSG00000085438.2_119424784_119430525_1	chr2	+	842	3	FSM	ENSMUSG00000085438.2	ENSMUST00000153581.2	8300	3	0	7458	0	-702	multi-exon	FALSE	canonical	3	345	junction_2	41.5	1380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATCTAAATTCTGGCTC	NA	False	NA	10	True	AATATA	-18	NA	119424783	119430525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_119424916_119426739_119426993_119430068
ENSMUSG00000085438.2_119424784_119430525_2	chr2	+	673	3	FSM	ENSMUSG00000085438.2	ENSMUST00000147425.2	1381	3	6	702	0	-702	multi-exon	FALSE	canonical	3	71	junction_2	178.5	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATCTAAATTCTGGCTC	NA	False	NA	10	True	AATATA	-18	NA	119424783	119430525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_119424916_119426739_119426824_119430068
ENSMUSG00000085438.2_119424784_119431227_1	chr2	+	1544	3	FSM	ENSMUSG00000085438.2	ENSMUST00000153581.2	8300	3	0	6756	0	0	multi-exon	FALSE	canonical	3	345	junction_2	41.5	1992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTTGGACAGATTTT	NA	False	NA	NA	False	TATAAA	-29	NA	119424783	119431227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_119424916_119426739_119426993_119430068
ENSMUSG00000085457.4_34101910_34119961_1	chr13	+	1174	8	NNC	ENSMUSG00000085457.4	novel	397	2	NA	NA	-17640	-652	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	92	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCCCCAACCGCGCCCGA	NA	False	NA	NA	False	NA	NA	NA	34101909	34119961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_34102213_34102356_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119904
ENSMUSG00000085457.4_34101910_34119961_2	chr13	+	1494	8	NIC	ENSMUSG00000085457.4	novel	397	2	NA	NA	-17640	-652	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	798	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCCCCAACCGCGCCCGA	NA	False	NA	NA	False	NA	NA	NA	34101909	34119961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119601_34119778_34119904
ENSMUSG00000085492.8_71895552_71905741_1	chr17	-	1363	4	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	34.8807492274273	657	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905741	71895551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_71895980_71897482_71897518_71898852_71898942_71904930
ENSMUSG00000085492.8_71895552_71905762_1	chr17	-	1170	4	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	34.8807492274273	420	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905762	71895551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_71895980_71897482_71897518_71898852_71898942_71905144
ENSMUSG00000085492.8_71895552_71905762_2	chr17	-	1081	3	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_2	31	335	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905762	71895551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_71895980_71897482_71897518_71905144
ENSMUSG00000085495.2_170353365_170360987_1	chr2	-	669	4	NIC	ENSMUSG00000085495.2	novel	3172	3	NA	NA	-7140	-12088	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	10321	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGACTGAACCACGGGGCG	NA	False	NA	NA	False	NA	NA	NA	170360987	170353364	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_170353390_170357658_170357767_170358469_170358611_170360592
ENSMUSG00000085525.8_146206901_146214954_1	chr4	+	197	3	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	110.5	221	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAGAAAAAAAAA	NA	False	NA	-17	True	NA	NA	NA	146206900	146214954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146206973_146209452_146209546_146214922
ENSMUSG00000085525.8_146206901_146214954_2	chr4	+	444	3	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_2	87.5	1271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAGAAAAAAAAA	NA	False	NA	-17	True	NA	NA	NA	146206900	146214954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146207223_146209452_146209546_146214925
ENSMUSG00000085525.8_146206901_146214954_3	chr4	+	488	3	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_2	40	1038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAGAAAAAAAAA	NA	False	NA	-17	True	NA	NA	NA	146206900	146214954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146207267_146209452_146209546_146214925
ENSMUSG00000085525.8_146206901_146215006_1	chr4	+	499	3	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	242	junction_1	5.5	2623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTGCTGTTCACATTTC	NA	False	NA	35	True	NA	NA	NA	146206900	146215006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146207223_146209452_146209546_146214922
ENSMUSG00000085525.8_146206901_146215006_2	chr4	+	543	3	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_1	53	1658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTGCTGTTCACATTTC	NA	False	NA	35	True	NA	NA	NA	146206900	146215006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146207267_146209452_146209546_146214922
ENSMUSG00000085525.8_146206901_146452634_1	chr4	+	811	4	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	0	237630	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	116.759011072665	9063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGTTTGTTGCGTCT	NA	False	NA	NA	False	NA	NA	NA	146206900	146452634	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_146207223_146209452_146209546_146214922_146215005_146452320
ENSMUSG00000085560.3_96600769_96712699_1	chr7	-	2455	14	NIC	ENSMUSG00000085560.3	novel	2550	2	NA	NA	-111606	-3652	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAAAGCACGTTGCAACT	NA	False	NA	NA	False	NA	NA	NA	96712699	96600768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_96601152_96605150_96605261_96607281_96607403_96608877_96609019_96622688_96622770_96652004_96652100_96672824_96672958_96680544_96680644_96680752_96680791_96684437_96684505_96689105_96689244_96706654_96706753_96708992_96709020_96711775
ENSMUSG00000085572.2_14531099_14581244_1	chr10	+	1227	7	Genic_Genomic	ENSMUSG00000085572.2	novel	815	6	NA	NA	-8865	37182	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1242	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATACTTCCGCTTCCGCCT	8034	False	NA	NA	False	NA	NA	NA	14531098	14581244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_14531590_14543675_14543853_14551677_14551787_14559807_14559884_14560624_14560753_14563357_14563453_14581093
ENSMUSG00000085572.2_14531099_14581244_2	chr10	+	906	4	Genic_Genomic	ENSMUSG00000085572.2	novel	815	6	NA	NA	-8865	37182	multi-exon	FALSE	non_canonical	0	0	junction_1	0	109	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATACTTCCGCTTCCGCCT	8034	False	NA	NA	False	NA	NA	NA	14531098	14581244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_14531590_14536809_14536897_14543675_14543853_14581093
ENSMUSG00000085587.2_10583707_10585936_1	chrX	-	1946	2	NNC	ENSMUSG00000085587.2	novel	543	2	NA	NA	-987	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1269	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACCGCGAGTAACACTCG	9799	False	NA	NA	False	GATAAA	-12	NA	10585936	10583706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_10583944_10584227
ENSMUSG00000085587.2_10583707_10585936_3	chrX	-	1747	2	NIC	ENSMUSG00000085587.2	novel	543	2	NA	NA	-987	5	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	711	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACCGCGAGTAACACTCG	9799	False	NA	NA	False	GATAAA	-12	NA	10585936	10583706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_10583740_10584222
ENSMUSG00000085596.2_167449764_167473899_1	chr2	+	1838	5	NIC	ENSMUSG00000085596.2	novel	2019	4	NA	NA	54530	24134	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	4278	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGCCGGCCCCTTCTTCA	5998	False	NA	NA	False	NA	NA	NA	167449763	167473899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_167451168_167452223_167452350_167459748_167459898_167471089_167471209_167473859
ENSMUSG00000085596.2_167449764_167473899_2	chr2	+	1719	4	NIC	ENSMUSG00000085596.2	novel	2019	4	NA	NA	54530	24134	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	4658	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGCCGGCCCCTTCTTCA	5998	False	NA	NA	False	NA	NA	NA	167449763	167473899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_167451168_167452223_167452350_167459748_167459898_167473859
ENSMUSG00000085612.2_14117108_14135197_1	chr16	+	1289	4	Genic_Genomic	ENSMUSG00000085612.2	novel	520	2	NA	NA	-12597	3319	multi-exon	FALSE	non_canonical	0	0	junction_1	0	220	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGCCACGCCTCTCCA	NA	False	NA	NA	False	NA	NA	NA	14117107	14135197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_14118074_14128910_14128996_14131679_14131878_14135157
ENSMUSG00000085622.10_71056569_71062369_1	chr12	-	826	3	FSM	ENSMUSG00000085622.10	ENSMUST00000136690.3	1063	3	237	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	2	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGTTCATAGATTCCATT	NA	False	NA	NA	False	AATAAA	-26	NA	71062369	71056568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_71057254_71061229_71061282_71062280
ENSMUSG00000085628.5_85125997_85129130_1	chr11	+	527	3	NIC	ENSMUSG00000085628.5	novel	635	4	NA	NA	0	0	intron_retention	FALSE	canonical	2	3	junction_2	1.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGGCCTGAGCAGGACAA	NA	False	NA	NA	False	ATTAAA	-16	NA	85125996	85129130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_85126159_85128236_85128341_85128869
ENSMUSG00000085634.3_111658884_111668891_1	chr13	-	424	2	NNC	ENSMUSG00000085634.3	novel	663	2	NA	NA	17554	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGTTTTTTTTGTTTTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	111668891	111658883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_111659245_111668828
ENSMUSG00000085636.2_119995278_120042105_1	chr11	+	3995	16	Genic_Genomic	ENSMUSG00000085636.2	novel	1657	2	NA	NA	-46110	-1062	multi-exon	TRUE	non_canonical	0	0	junction_1	0	452	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTCAGCTCCGCTTCGCT	NA	False	NA	NA	False	NA	NA	NA	119995277	120042105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr11_+_119996863_119997259_119997437_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
ENSMUSG00000085662.2_75828007_75829875_1	chr10	-	883	2	NNC	ENSMUSG00000085662.2	novel	405	2	NA	NA	-49	518	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	40	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTTTGGGGCTCTCTGC	7544	False	NA	NA	False	AATAAA	-19	NA	75829875	75828006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_75828750_75829735
ENSMUSG00000085662.2_75829643_75845425_1	chr10	-	1853	6	NIC	ENSMUSG00000085662.2	novel	405	2	NA	NA	-15599	-1118	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTTGGATCAACATCCGGG	NA	False	NA	NA	False	NA	NA	NA	75845425	75829642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_75829767_75831613_75831765_75836222_75836392_75840528_75840745_75841823_75841927_75844335
ENSMUSG00000085689.2_65755972_65913308_2	chr6	-	2103	15	NIC	ENSMUSG00000085689.2	novel	816	3	NA	NA	-157075	-10444	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	100	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCCCCGCGGCCAGGCCC	NA	False	NA	NA	False	NA	NA	NA	65913308	65755971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_65756178_65771283_65771368_65808232_65808356_65832932_65833108_65834626_65834802_65836340_65836463_65839898_65839979_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
ENSMUSG00000085689.2_65756009_65913360_1	chr6	-	1566	11	NIC	ENSMUSG00000085689.2	novel	816	3	NA	NA	-157127	-10481	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	95	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGCTCGGCTCCCAGAA	NA	False	NA	NA	False	NA	NA	NA	65913360	65756008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_65756178_65771283_65771368_65808232_65808356_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
ENSMUSG00000085689.2_65756009_65913360_2	chr6	-	2118	15	NIC	ENSMUSG00000085689.2	novel	816	3	NA	NA	-157127	-10481	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	142	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGCTCGGCTCCCAGAA	NA	False	NA	NA	False	NA	NA	NA	65913360	65756008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_65756178_65771283_65771368_65808232_65808356_65832932_65833108_65834626_65834802_65836340_65836463_65839898_65839979_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
ENSMUSG00000085715.3_102491328_102525326_1	chrX	+	696	2	NIC	ENSMUSG00000085715.3	novel	3263	2	NA	NA	0	-686	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACTGAAAGAAACCACTAG	NA	False	NA	NA	False	NA	NA	NA	102491327	102525326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_102491578_102524880
ENSMUSG00000085715.3_102491328_102525326_2	chrX	+	679	2	NNC	ENSMUSG00000085715.3	novel	3263	2	NA	NA	0	-686	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	76	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACTGAAAGAAACCACTAG	NA	False	NA	NA	False	NA	NA	NA	102491327	102525326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_102491561_102524880
ENSMUSG00000085741.9_156682020_156697490_1	chr2	-	2807	3	NIC	ENSMUSG00000085741.9	novel	904	2	NA	NA	546	4251	intron_retention	FALSE	non_canonical	0	0	junction_1	0	305	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGACCTGACGTCAGATCCC	NA	False	NA	NA	False	NA	NA	NA	156697490	156682019	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_156682159_156686075_156686302_156695048
ENSMUSG00000085757.8_61554145_61565287_1	chrX	-	698	4	NNC	ENSMUSG00000085757.8	novel	594	3	NA	NA	5330	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	20.4993224820291	531	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61565287	61554144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_61554605_61558040_61558144_61564384_61564454_61565221
ENSMUSG00000085757.8_61554145_61565287_2	chrX	-	629	3	NNC	ENSMUSG00000085757.8	novel	594	3	NA	NA	5330	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	16	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61565287	61554144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_61554605_61558040_61558144_61565221
ENSMUSG00000085757.8_61554145_61566033_1	chrX	-	628	3	NNC	ENSMUSG00000085757.8	novel	594	3	NA	NA	4584	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	19	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61566033	61554144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_61554605_61558040_61558144_61565968
ENSMUSG00000085757.8_61554145_61592531_1	chrX	-	699	4	NNC	ENSMUSG00000085757.8	novel	747	3	NA	NA	-21914	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	23.4710223230453	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61592531	61554144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_61554605_61558040_61558144_61570433_61570504_61592465
ENSMUSG00000085757.8_61554145_61597015_1	chrX	-	698	4	NNC	ENSMUSG00000085757.8	novel	594	3	NA	NA	-26398	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	21.9241115365405	610	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61597015	61554144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_61554605_61558040_61558144_61575716_61575786_61596949
ENSMUSG00000085757.8_61554145_61597015_2	chrX	-	629	3	NNC	ENSMUSG00000085757.8	novel	594	3	NA	NA	-26398	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_2	22.5	539	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61597015	61554144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_61554605_61558040_61558144_61596949
ENSMUSG00000085757.8_61554145_61597015_4	chrX	-	699	4	NNC	ENSMUSG00000085757.8	novel	594	3	NA	NA	-26398	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	23.2522400354604	603	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61597015	61554144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_61554605_61558040_61558144_61591628_61591699_61596949
ENSMUSG00000085761.2_141745209_141756149_1	chr4	+	472	2	FSM	ENSMUSG00000085761.2	ENSMUST00000126231.2	630	2	0	158	0	-158	multi-exon	FALSE	canonical	2	4	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTATTCTGGTTGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	141745208	141756149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_141745442_141755910
ENSMUSG00000085793.3_84498196_84593293_1	chr12	+	1001	6	NIC	ENSMUSG00000085793.4	novel	2270	6	NA	NA	0	374	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	59.240526668827	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTGAGGCCCAGGTCTGT	NA	False	NA	NA	False	AATAAA	-19	NA	84498195	84593293	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_84498318_84503014_84503090_84504722_84504761_84506392_84506460_84509142_84509227_84592678
ENSMUSG00000085794.6_83669788_83675055_1	chr6	-	1172	6	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5470	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	56.560056577058	347	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTAGGCGGACTTTGC	2754	False	NA	-11	True	NA	NA	NA	83675055	83669787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83670449_83671333_83671456_83672566_83672604_83672682_83672843_83673961_83674051_83674952
ENSMUSG00000085794.6_83669788_83675055_2	chr6	-	1233	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5470	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	48.1949167444037	400	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTAGGCGGACTTTGC	2754	False	NA	-11	True	NA	NA	NA	83675055	83669787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83670449_83671333_83671456_83672566_83672825_83673961_83674051_83674952
ENSMUSG00000085794.6_83669788_83675055_3	chr6	-	1205	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5470	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	47.5263085038171	393	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTAGGCGGACTTTGC	2754	False	NA	-11	True	NA	NA	NA	83675055	83669787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83670449_83671333_83671456_83672566_83672797_83673961_83674051_83674952
ENSMUSG00000085794.6_83669788_83675055_4	chr6	-	1126	6	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5470	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	51.4587213210744	248	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTAGGCGGACTTTGC	2754	False	NA	-11	True	NA	NA	NA	83675055	83669787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83670449_83671333_83671456_83672566_83672604_83672682_83672797_83673961_83674051_83674952
ENSMUSG00000085794.6_83669788_83675055_5	chr6	-	1037	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5470	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	56.3709810097358	59	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTAGGCGGACTTTGC	2754	False	NA	-11	True	NA	NA	NA	83675055	83669787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_83670449_83671333_83671456_83672566_83672604_83672682_83672797_83674952
ENSMUSG00000085823.8_137609278_137611279_1	chr4	-	535	3	NNC	ENSMUSG00000085823.8	novel	714	2	NA	NA	-31	403	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	4.5	83	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCTGTATTTGTGCGTT	NA	False	NA	NA	False	NA	NA	NA	137611279	137609277	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_137609451_137610538_137610721_137611099
ENSMUSG00000085823.8_137609681_137611279_1	chr4	-	848	3	NNC	ENSMUSG00000085823.8	novel	849	3	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	4.5	83	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTTTTGCCTTCATGT	NA	False	NA	NA	False	ATTAAA	-16	NA	137611279	137609680	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_137610167_137610538_137610721_137611099
ENSMUSG00000085824.8_34906426_34907370_1	chr4	-	583	2	NNC	ENSMUSG00000085824.8	novel	1556	3	NA	NA	4111	-302	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	102	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCCAGGAGGCTAGGAG	NA	False	NA	NA	False	NA	NA	NA	34907370	34906425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_34906704_34907065
ENSMUSG00000085843.2_98682005_98684364_1	chr4	+	234	2	ISM	ENSMUSG00000085843.2	ENSMUST00000133455.2	2251	3	0	2773	0	-2773	5prime_fragment	FALSE	canonical	3	30	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATTCTCTTACCTAGAAT	NA	False	NA	NA	False	ATTAAA	-22	NA	98682004	98684364	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_98682120_98684245
ENSMUSG00000085860.2_97489337_97509463_1	chr11	+	463	3	ISM	ENSMUSG00000085860.2	ENSMUST00000131687.2	612	4	0	4256	0	-394	5prime_fragment	FALSE	canonical	3	106	junction_2	5.5	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCCACACCTTCTGAGAG	NA	False	NA	NA	False	NA	NA	NA	97489336	97509463	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_97489494_97505749_97505855_97509262
ENSMUSG00000085860.2_97489337_97513719_1	chr11	+	745	5	NNC	ENSMUSG00000085860.2	novel	612	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	47.9843724560403	1508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	29	True	AATATA	-14	NA	97489336	97513719	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97489494_97489781_97489915_97505749_97505855_97509262_97509326_97513432
ENSMUSG00000085860.2_97489337_97513719_2	chr11	+	769	5	NNC	ENSMUSG00000085860.2	novel	612	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	50.6680372621636	1440	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	29	True	AATATA	-14	NA	97489336	97513719	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_97489494_97505749_97505855_97506394_97506552_97509262_97509326_97513432
ENSMUSG00000085875.4_123798834_123805105_1	chr4	-	510	5	NNC	ENSMUSG00000085875.4	novel	658	2	NA	NA	-5804	21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	880	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACACGGGCAGGCGGGCTC	NA	False	NA	NA	False	NA	NA	NA	123805105	123798833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_123798881_123799026_123799100_123803435_123803476_123803629_123803760_123804885
ENSMUSG00000085885.2_25254338_25281773_1	chr4	+	2057	15	Genic_Genomic	ENSMUSG00000085885.2	novel	680	5	NA	NA	287821	10674	multi-exon	FALSE	non_canonical	0	0	junction_1	0	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGGAAACGGCAGACACG	NA	False	NA	NA	False	NA	NA	NA	25254337	25281773	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
ENSMUSG00000085890.8_69573874_69575889_1	chr11	+	714	6	NIC	ENSMUSG00000085890.8	novel	816	3	NA	NA	910	-5701	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTGGGAAGGCCCTCCA	47	False	NA	NA	False	NA	NA	NA	69573873	69575889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_69574171_69574679_69574819_69575043_69575160_69575310_69575359_69575485_69575565_69575854
ENSMUSG00000085912.3_29275834_29278729_1	chr17	-	1135	3	NIC	ENSMUSG00000085912.3	novel	3218	2	NA	NA	12587	570	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAGAGTCAGGCGCTCAG	NA	False	NA	NA	False	NA	NA	NA	29278729	29275833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_29275960_29276834_29276933_29277818
ENSMUSG00000085915.2_100368082_100385577_1	chr5	-	902	3	NNC	ENSMUSG00000085915.2	novel	886	5	NA	NA	117401	217	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.5	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGGGAAATGGCTCTTG	NA	False	NA	NA	False	GATAAA	-29	NA	100385577	100368081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_100368490_100373633_100373836_100385285
ENSMUSG00000085955.2_98573391_98586805_1	chr11	-	2137	12	NIC	ENSMUSG00000085955.2	novel	353	2	NA	NA	-12564	356	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	10607	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGCCAGGCATGGCGA	418	False	NA	NA	False	GGGGCT	-5	NA	98586805	98573390	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581480_98581741_98581846_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
ENSMUSG00000085962.9_35161733_35178105_1	chr13	+	1586	10	Genic_Genomic	ENSMUSG00000085962.9	novel	982	5	NA	NA	13692	3670	multi-exon	FALSE	non_canonical	0	0	junction_1	0	449	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAGGGGCGGAGCCAGAG	NA	False	NA	NA	False	NA	NA	NA	35161732	35178105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177214_35177812
ENSMUSG00000085962.9_35161733_35178105_2	chr13	+	1500	10	Genic_Genomic	ENSMUSG00000085962.9	novel	982	5	NA	NA	13692	3670	multi-exon	FALSE	non_canonical	0	0	junction_1	0	328	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAGGGGCGGAGCCAGAG	NA	False	NA	NA	False	NA	NA	NA	35161732	35178105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177312_35177996
ENSMUSG00000085962.9_35161733_35178105_3	chr13	+	1684	10	Genic_Genomic	ENSMUSG00000085962.9	novel	982	5	NA	NA	13692	3670	multi-exon	FALSE	non_canonical	0	0	junction_1	0	550	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAGGGGCGGAGCCAGAG	NA	False	NA	NA	False	NA	NA	NA	35161732	35178105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177312_35177812
ENSMUSG00000085962.9_35161733_35178105_4	chr13	+	1576	10	Genic_Genomic	ENSMUSG00000085962.9	novel	982	5	NA	NA	13692	3670	multi-exon	FALSE	non_canonical	0	0	junction_1	0	411	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAGGGGCGGAGCCAGAG	NA	False	NA	NA	False	NA	NA	NA	35161732	35178105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177204_35177812
ENSMUSG00000085962.9_35161733_35178105_5	chr13	+	1392	10	Genic_Genomic	ENSMUSG00000085962.9	novel	982	5	NA	NA	13692	3670	multi-exon	FALSE	non_canonical	0	0	junction_1	0	474	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAGGGGCGGAGCCAGAG	NA	False	NA	NA	False	NA	NA	NA	35161732	35178105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177204_35177996
ENSMUSG00000085984.8_66532783_66534389_1	chr14	-	575	3	FSM	ENSMUSG00000085984.8	ENSMUST00000153646.8	764	3	189	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	2	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAGGCAAGGCCTTAC	NA	False	NA	NA	False	TTTAAA	-40	NA	66534389	66532782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_66533036_66533403_66533594_66534257
ENSMUSG00000086003.8_94024311_94046602_1	chr11	+	565	5	NIC	ENSMUSG00000086003.8	novel	695	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_2	57.7711000414567	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGTTTACCTGCTTGTA	NA	False	NA	15	True	AATAAA	-22	NA	94024310	94046602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_94024382_94029312_94029490_94042163_94042239_94046281_94046324_94046402
ENSMUSG00000086003.8_94041641_94046602_1	chr11	+	474	4	NNC	ENSMUSG00000086003.8	novel	695	6	NA	NA	15155	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	67.7314960380734	100	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGTTTACCTGCTTGTA	NA	False	NA	15	True	AATAAA	-22	NA	94041640	94046602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_94041798_94042163_94042239_94046281_94046324_94046402
ENSMUSG00000086015.2_95749691_95751368_1	chr11	+	767	2	FSM	ENSMUSG00000086015.2	ENSMUST00000146868.2	1269	2	0	502	0	-502	multi-exon	TRUE	canonical	3	111	junction_1	0	600	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGGCTGCTTAATTGTAT	1026	False	NA	NA	False	NA	NA	NA	95749690	95751368	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95749909_95750819
ENSMUSG00000086046.2_146500228_146627265_1	chr4	-	1288	7	NNC	ENSMUSG00000086046.2	novel	1069	3	NA	NA	4065	103268	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	809	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATGAAACCGCGGAACT	NA	False	NA	NA	False	NA	NA	NA	146627265	146500227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_146500544_146502756_146502850_146597241_146597335_146603534_146603615_146616526_146616611_146619877_146620005_146626770
ENSMUSG00000086046.2_146586484_146627265_1	chr4	-	904	5	NNC	ENSMUSG00000086046.2	novel	1069	3	NA	NA	4065	17012	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	184	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCACGAGGCAGGCGAAATA	NA	False	NA	NA	False	NA	NA	NA	146627265	146586483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_146586602_146603534_146603615_146616526_146616611_146619877_146620005_146626770
ENSMUSG00000086061.8_141131664_141135644_1	chr4	+	916	7	Genic_Genomic	ENSMUSG00000086061.8	novel	561	4	NA	NA	5496	-1740	multi-exon	FALSE	non_canonical	0	0	junction_1	0	401	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATTGACCCTGCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	141131663	141135644	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_141131944_141132063_141132151_141132362_141132447_141132582_141132672_141134399_141134534_141135114_141135329_141135616
ENSMUSG00000086067.2_85328060_85340075_1	chr8	-	1570	5	NIC	ENSMUSG00000086067.2	novel	1193	5	NA	NA	3738	9771	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCACGGAAGAGGCGGAGAA	NA	False	NA	NA	False	NA	NA	NA	85340075	85328059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_85328135_85328384_85328451_85328552_85328669_85338226_85338378_85338913
ENSMUSG00000086083.2_33776967_33787373_1	chr16	+	1634	6	Genic_Genomic	ENSMUSG00000086083.2	novel	869	2	NA	NA	-9642	-309	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGCCGAGGGGCTTGGGG	NA	False	NA	NA	False	NA	NA	NA	33776966	33787373	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33784141_33784296_33787195
ENSMUSG00000086147.3_147056433_147114014_1	chr4	+	1166	3	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	0	38802	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	168.5	684	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTCTTTGCGAGACTGT	NA	False	NA	NA	False	NA	NA	NA	147056432	147114014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_147056575_147058404_147058498_147113083
ENSMUSG00000086189.2_30733058_30754014_1	chr3	+	1626	8	Genic_Genomic	ENSMUSG00000086189.2	novel	4580	4	NA	NA	-7176	7499	multi-exon	FALSE	non_canonical	0	0	junction_1	0	173	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGGCGTACCAGAGTGCA	707	False	NA	NA	False	NA	NA	NA	30733057	30754014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_+_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30749635_30749780_30753847
ENSMUSG00000086189.2_30733058_30754014_2	chr3	+	1770	9	Genic_Genomic	ENSMUSG00000086189.2	novel	4580	4	NA	NA	-7176	7499	multi-exon	FALSE	non_canonical	0	0	junction_1	0	284	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGGCGTACCAGAGTGCA	707	False	NA	NA	False	NA	NA	NA	30733057	30754014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_+_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745450_30749635_30749780_30753847
ENSMUSG00000086196.8_60183318_60213647_1	chr2	+	1535	9	NIC	ENSMUSG00000086196.8	novel	1381	6	NA	NA	-2378	12069	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACCTCTGAGGCGCGCAG	NA	False	NA	NA	False	NA	NA	NA	60183317	60213647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_60183377_60184748_60184907_60185712_60185905_60187620_60187762_60188811_60188923_60195354_60195520_60199102_60199274_60206201_60206574_60213481
ENSMUSG00000086202.2_45586617_45588459_1	chr2	+	999	2	FSM	ENSMUSG00000086202.2	ENSMUST00000134308.2	424	2	-195	-380	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	1119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATGTCTTTATATCAGA	NA	False	NA	NA	False	ATTAAA	-17	NA	45586616	45588459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_45587155_45587998
ENSMUSG00000086219.8_116576779_116577729_1	chr5	+	421	2	ISM	ENSMUSG00000086219.8	ENSMUST00000133548.5	562	3	0	22428	0	-22428	5prime_fragment	FALSE	canonical	3	389	junction_1	0	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAACAAAACCACAAAATCAA	NA	False	NA	NA	False	NA	NA	NA	116576778	116577729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_116576898_116577427
ENSMUSG00000086219.8_116576779_116600561_1	chr5	+	436	4	NNC	ENSMUSG00000086219.8	novel	3360	4	NA	NA	0	404	at_least_one_novel_splicesite	FALSE	canonical	3	130	junction_3	120.252512101272	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTGTGTGATGTCAGAT	NA	False	NA	-66	True	AAGAAA	-33	NA	116576778	116600561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_116576898_116577427_116577496_116599782_116599924_116600453
ENSMUSG00000086219.8_116576779_116600561_2	chr5	+	375	4	FSM	ENSMUSG00000086219.8	ENSMUST00000126959.5	3360	4	0	2985	0	404	multi-exon	FALSE	canonical	3	257	junction_3	60.4281023659982	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTGTGTGATGTCAGAT	NA	False	NA	-66	True	AAGAAA	-33	NA	116576778	116600561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_116576898_116577427_116577496_116599782_116599863_116600453
ENSMUSG00000086219.8_116576779_116600638_1	chr5	+	452	4	FSM	ENSMUSG00000086219.8	ENSMUST00000126959.5	3360	4	0	2908	0	481	multi-exon	FALSE	canonical	3	257	junction_3	60.4281023659982	2264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTGTTGTTGTTGTTTTG	NA	False	NA	11	True	NA	NA	NA	116576778	116600638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_116576898_116577427_116577496_116599782_116599863_116600453
ENSMUSG00000086219.8_116576779_116600638_2	chr5	+	513	4	NNC	ENSMUSG00000086219.8	novel	3360	4	NA	NA	0	481	at_least_one_novel_splicesite	FALSE	canonical	3	130	junction_3	120.252512101272	3039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTGTTGTTGTTGTTTTG	NA	False	NA	11	True	NA	NA	NA	116576778	116600638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_116576898_116577427_116577496_116599782_116599924_116600453
ENSMUSG00000086219.8_116576779_116600638_3	chr5	+	585	5	NNC	ENSMUSG00000086219.8	novel	3360	4	NA	NA	0	481	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	162.592089290961	1560	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTGTTGTTGTTGTTTTG	NA	False	NA	11	True	NA	NA	NA	116576778	116600638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_116576898_116577427_116577496_116593800_116593934_116599782_116599863_116600453
ENSMUSG00000086228.4_65279007_65285487_1	chr9	+	1123	4	FSM	ENSMUSG00000086228.4	ENSMUST00000239433.2	846	4	-121	-156	-121	156	multi-exon	FALSE	canonical	3	844	junction_1	5.79271573232759	4307	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGGTGTAGTGACACATG	NA	False	NA	20	True	NA	NA	NA	65279006	65285487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_65279411_65281031_65281242_65284190_65284293_65285080
ENSMUSG00000086234.4_74161369_74229081_1	chr5	+	2564	9	Fusion	ENSMUSG00000087250.3_ENSMUSG00000086234.4	novel	831	2	NA	NA	-13507	28417	multi-exon	TRUE	non_canonical	0	0	junction_1	0	235	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGCGGCGGCGAGGGCG	NA	False	NA	NA	False	NA	NA	NA	74161368	74229081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr5_+_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74228910
ENSMUSG00000086237.2_45550088_45563264_1	chr16	+	2610	4	Genic_Genomic	ENSMUSG00000086237.2	novel	627	2	NA	NA	-6778	5583	multi-exon	FALSE	non_canonical	0	0	junction_1	0	456	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCTGCGCCCGCTACAGA	NA	False	NA	NA	False	NA	NA	NA	45550087	45563264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_45552323_45557255_45557394_45557886_45557999_45563139
ENSMUSG00000086237.2_45551512_45563264_4	chr16	+	1186	4	Genic_Genomic	ENSMUSG00000086237.2	novel	627	2	NA	NA	-5354	5583	multi-exon	FALSE	non_canonical	0	0	junction_1	0	394	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCTGCGCCCGCTACAGA	NA	False	NA	NA	False	NA	NA	NA	45551511	45563264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_45552323_45557255_45557394_45557886_45557999_45563139
ENSMUSG00000086237.2_45551737_45563264_1	chr16	+	961	4	Genic_Genomic	ENSMUSG00000086237.2	novel	627	2	NA	NA	-5129	5583	multi-exon	FALSE	non_canonical	0	0	junction_1	0	181	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCTGCGCCCGCTACAGA	NA	False	NA	NA	False	NA	NA	NA	45551736	45563264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_45552323_45557255_45557394_45557886_45557999_45563139
ENSMUSG00000086237.2_45551737_45563264_2	chr16	+	1187	6	Genic_Genomic	ENSMUSG00000086237.2	novel	627	2	NA	NA	-5129	5583	multi-exon	FALSE	non_canonical	0	0	junction_1	0	751	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCTGCGCCCGCTACAGA	NA	False	NA	NA	False	NA	NA	NA	45551736	45563264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_45552323_45553100_45553143_45557255_45557394_45557886_45557999_45560681_45560866_45563139
ENSMUSG00000086237.2_45551737_45563264_3	chr16	+	1003	5	Genic_Genomic	ENSMUSG00000086237.2	novel	627	2	NA	NA	-5129	5583	multi-exon	FALSE	non_canonical	0	0	junction_1	0	146	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCTGCGCCCGCTACAGA	NA	False	NA	NA	False	NA	NA	NA	45551736	45563264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_45552323_45553100_45553143_45557255_45557394_45557886_45557999_45563139
ENSMUSG00000086241.3_76367441_76389768_1	chr10	-	3122	22	NIC	ENSMUSG00000086241.3	novel	1237	4	NA	NA	8292	14264	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	461	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCGCAGGCGCGAGCCTC	NA	False	NA	NA	False	NA	NA	NA	76389768	76367440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_76367509_76367683_76367853_76369346_76369486_76371392_76371502_76372077_76372200_76374185_76374283_76375618_76375755_76376145_76376255_76376679_76376799_76377652_76377751_76378301_76378330_76379684_76379742_76380298_76380371_76381284_76381336_76381895_76382046_76382596_76382694_76383268_76383375_76385053_76385120_76385636_76385718_76386418_76386590_76388153_76388233_76388770
ENSMUSG00000086290.10_132035987_132038335_1	chr4	+	554	4	NIC	ENSMUSG00000086290.10	novel	606	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	84.7388144044196	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035986	132038335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_132036219_132037148_132037215_132037461_132037527_132038144
ENSMUSG00000086290.10_132035987_132038335_2	chr4	+	605	5	NNC	ENSMUSG00000086290.10	novel	606	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	82.4874990528868	6066	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035986	132038335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_132036219_132037148_132037224_132037473_132037527_132037761_132037816_132038144
ENSMUSG00000086290.10_132035987_132038335_3	chr4	+	588	4	NNC	ENSMUSG00000086290.10	novel	935	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	84.7388144044196	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035986	132038335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_132036219_132037148_132037215_132037461_132037527_132038110
ENSMUSG00000086290.10_132035987_132038335_4	chr4	+	596	5	NNC	ENSMUSG00000086290.10	novel	606	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	87.6138544980188	1938	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035986	132038335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_132036219_132037160_132037215_132037461_132037527_132037761_132037816_132038144
ENSMUSG00000086290.10_132035987_132038335_5	chr4	+	596	5	NNC	ENSMUSG00000086290.10	novel	606	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	82.4874990528868	5847	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035986	132038335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_132036219_132037148_132037215_132037473_132037527_132037761_132037816_132038144
ENSMUSG00000086290.10_132035987_132038335_6	chr4	+	642	5	FSM	ENSMUSG00000086290.10	ENSMUST00000128000.9	422	5	-220	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	86.7478385897885	4956	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035986	132038335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132036253_132037148_132037215_132037461_132037527_132037761_132037816_132038144
ENSMUSG00000086290.10_132035987_132038335_7	chr4	+	595	4	NNC	ENSMUSG00000086290.10	novel	935	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	84.7388144044196	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035986	132038335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_132036219_132037148_132037215_132037461_132037527_132038103
ENSMUSG00000086290.10_132035987_132038335_8	chr4	+	594	5	NNC	ENSMUSG00000086290.10	novel	606	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	82.6891770427061	2377	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035986	132038335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_132036219_132037148_132037215_132037461_132037527_132037775_132037816_132038144
ENSMUSG00000086316.9_152506623_152524292_1	chrX	+	675	4	NNC	ENSMUSG00000086316.9	novel	788	4	NA	NA	0	32	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	74.4595341257399	272	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTAGAGCTATACGATTA	NA	False	NA	41	True	AATAAA	-16	NA	152506622	152524292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_152506826_152508700_152508838_152511857_152511936_152524035
ENSMUSG00000086322.8_133971960_133972836_1	chr4	+	600	3	NNC	ENSMUSG00000086322.8	novel	1729	3	NA	NA	666	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2009	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGACCAAGAAACAGGGAGT	3808	False	NA	NA	False	NA	NA	NA	133971959	133972836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_133972242_133972335_133972399_133972581
ENSMUSG00000086322.8_133971960_133972903_1	chr4	+	637	3	NNC	ENSMUSG00000086322.8	novel	1729	3	NA	NA	666	40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7447	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGAGAGGCCCGCCCGGG	3808	False	NA	NA	False	NA	NA	NA	133971959	133972903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_133972235_133972325_133972399_133972614
ENSMUSG00000086322.8_133971960_133972903_2	chr4	+	728	2	NIC	ENSMUSG00000086322.8	novel	802	2	NA	NA	666	40	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4441	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGAGAGGCCCGCCCGGG	3808	False	NA	NA	False	NA	NA	NA	133971959	133972903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_133972399_133972614
ENSMUSG00000086328.2_115896699_115897645_2	chr2	-	441	2	FSM	ENSMUSG00000086328.2	ENSMUST00000140185.2	721	2	280	0	280	0	multi-exon	FALSE	canonical	1	3	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATCTGAGTCTGTAC	NA	False	NA	NA	False	AATAAA	-20	NA	115897645	115896698	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_115897100_115897605
ENSMUSG00000086341.3_55797975_55807521_1	chr14	-	2666	15	Genic_Genomic	ENSMUSG00000086341.3	novel	535	4	NA	NA	5927	5641	multi-exon	FALSE	non_canonical	0	0	junction_1	0	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGCCAGGCCTGCTGACG	NA	False	NA	NA	False	NA	NA	NA	55807521	55797974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr14_-_55798085_55798531_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
ENSMUSG00000086359.2_63854704_63970294_1	chr11	+	1666	7	NIC	ENSMUSG00000086359.2	novel	1072	4	NA	NA	-348	111428	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	753	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGCGGGACTTCCTCTT	NA	False	NA	NA	False	NA	NA	NA	63854703	63970294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_63855355_63867069_63867303_63884711_63884783_63936052_63936178_63962343_63962663_63964362_63964497_63970161
ENSMUSG00000086359.2_63854704_63970294_2	chr11	+	1433	6	NIC	ENSMUSG00000086359.2	novel	1072	4	NA	NA	-348	111428	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	122	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGCGGGACTTCCTCTT	NA	False	NA	NA	False	NA	NA	NA	63854703	63970294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_63855355_63884711_63884783_63936052_63936178_63962343_63962663_63964362_63964497_63970161
ENSMUSG00000086401.2_110921533_110928462_1	chr5	+	1546	7	Genic_Genomic	ENSMUSG00000086401.2	novel	2260	2	NA	NA	2718	1336	multi-exon	FALSE	non_canonical	0	0	junction_1	0	467	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGCGGAAGCGGGCAACG	NA	False	NA	NA	False	NA	NA	NA	110921532	110928462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_+_110921846_110922387_110923080_110923401_110923505_110924419_110924474_110925479_110925618_110927552_110927764_110928427
ENSMUSG00000086401.2_110921533_110928462_2	chr5	+	1466	6	Genic_Genomic	ENSMUSG00000086401.2	novel	2260	2	NA	NA	2718	1336	multi-exon	FALSE	non_canonical	0	0	junction_1	0	348	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGCGGAAGCGGGCAACG	NA	False	NA	NA	False	NA	NA	NA	110921532	110928462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_+_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928453
ENSMUSG00000086401.2_110921533_110928462_3	chr5	+	1500	6	Genic_Genomic	ENSMUSG00000086401.2	novel	2260	2	NA	NA	2718	1336	multi-exon	FALSE	non_canonical	0	0	junction_1	0	526	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGCGGAAGCGGGCAACG	NA	False	NA	NA	False	NA	NA	NA	110921532	110928462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_+_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928419
ENSMUSG00000086407.2_150425000_150450464_1	chr2	+	2019	8	Genic_Genomic	ENSMUSG00000086407.2	novel	2658	3	NA	NA	-23153	-1710	multi-exon	FALSE	non_canonical	0	0	junction_1	0	541	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCCTGGCGCGAGGAAAT	NA	False	NA	NA	False	NA	NA	NA	150424999	150450464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_+_150426109_150428300_150428436_150428911_150429087_150430822_150430940_150431952_150432046_150436221_150436338_150442163_150442281_150450307
ENSMUSG00000086407.2_150425000_150450464_3	chr2	+	2302	10	Genic_Genomic	ENSMUSG00000086407.2	novel	2658	3	NA	NA	-23153	-1710	multi-exon	TRUE	non_canonical	0	0	junction_1	0	848	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCCTGGCGCGAGGAAAT	NA	False	NA	NA	False	NA	NA	NA	150424999	150450464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_+_150426109_150427682_150427876_150428300_150428436_150428911_150429087_150430822_150430940_150431952_150432046_150436221_150436338_150441647_150441738_150442163_150442281_150450307
ENSMUSG00000086407.2_150425000_150450464_4	chr2	+	2212	9	Genic_Genomic	ENSMUSG00000086407.2	novel	2658	3	NA	NA	-23153	-1710	multi-exon	FALSE	non_canonical	0	0	junction_1	0	855	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCCTGGCGCGAGGAAAT	NA	False	NA	NA	False	NA	NA	NA	150424999	150450464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_+_150426109_150427682_150427876_150428300_150428436_150428911_150429087_150430822_150430940_150431952_150432046_150436221_150436338_150442163_150442281_150450307
ENSMUSG00000086421.2_118644713_118665021_4	chr2	-	1210	9	Genic_Genomic	ENSMUSG00000086421.2	novel	874	2	NA	NA	-418	15642	multi-exon	TRUE	non_canonical	0	0	junction_1	0	35	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGAGTCTGCCGCCGCGCT	NA	False	NA	NA	False	NA	NA	NA	118665021	118644712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_-_118644791_118644888_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
ENSMUSG00000086421.2_118644713_118665128_1	chr2	-	1317	9	Genic_Genomic	ENSMUSG00000086421.2	novel	874	2	NA	NA	-525	15642	multi-exon	FALSE	non_canonical	0	0	junction_1	0	911	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGAGTCTGCCGCCGCGCT	NA	False	NA	NA	False	NA	NA	NA	118665128	118644712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_-_118644791_118644888_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
ENSMUSG00000086421.2_118644713_118665128_2	chr2	-	1482	10	Genic_Genomic	ENSMUSG00000086421.2	novel	874	2	NA	NA	-525	15642	multi-exon	FALSE	non_canonical	0	0	junction_1	0	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGAGTCTGCCGCCGCGCT	NA	False	NA	NA	False	NA	NA	NA	118665128	118644712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_-_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118661292_118661451_118662033_118662109_118664480
ENSMUSG00000086421.2_118644713_118665128_3	chr2	-	1326	9	Genic_Genomic	ENSMUSG00000086421.2	novel	874	2	NA	NA	-525	15642	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1026	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGAGTCTGCCGCCGCGCT	NA	False	NA	NA	False	NA	NA	NA	118665128	118644712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_-_118644791_118644881_118644974_118648344_118648478_118649319_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
ENSMUSG00000086429.10_113023318_113045234_1	chr6	-	2100	10	NIC	ENSMUSG00000086429.10	novel	551	3	NA	NA	8904	21071	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCGAGCACGCCGCCGGAAG	936	False	NA	NA	False	NA	NA	NA	113045234	113023317	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_113023421_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
ENSMUSG00000086429.10_113023419_113045234_1	chr6	-	1999	10	NIC	ENSMUSG00000086429.10	novel	551	3	NA	NA	8904	20970	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACGAAGCCACCGCCGTCT	936	False	NA	NA	False	NA	NA	NA	113045234	113023418	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_113023421_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
ENSMUSG00000086430.2_5025453_5051010_1	chr2	+	2001	12	Genic_Genomic	ENSMUSG00000086430.2	novel	1065	2	NA	NA	-16638	5066	multi-exon	FALSE	non_canonical	0	0	junction_1	0	479	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGGAAGACCAGGAATGAG	NA	False	NA	NA	False	NA	NA	NA	5025452	5051010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_+_5026040_5026133_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797
ENSMUSG00000086430.2_5041358_5051010_1	chr2	+	646	4	Genic_Genomic	ENSMUSG00000086430.2	novel	1065	2	NA	NA	-733	5066	multi-exon	FALSE	non_canonical	0	0	junction_1	0	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGGAAGACCAGGAATGAG	NA	False	NA	NA	False	NA	NA	NA	5041357	5051010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_+_5041582_5044949_5045085_5047257_5047332_5050797
ENSMUSG00000086453.8_164589463_164610140_1	chr2	-	950	11	Genic_Genomic	ENSMUSG00000086453.8	novel	490	5	NA	NA	1399	6699	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACCCTGGATCTCCTCA	3538	False	NA	NA	False	NA	NA	NA	164610140	164589462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_-_164589480_164596029_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171_164601218_164604988_164605048_164605140_164605202_164607080_164607153_164609626_164609683_164609782
ENSMUSG00000086453.8_164596059_164610140_1	chr2	-	898	10	Genic_Genomic	ENSMUSG00000086453.8	novel	490	5	NA	NA	1399	103	multi-exon	FALSE	non_canonical	0	0	junction_1	0	544	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCACATTCAGCGCTGCCTT	3538	False	NA	NA	False	NA	NA	NA	164610140	164596058	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_-_164596129_164599315_164599379_164599602_164599657_164599920_164599980_164601171_164601218_164604988_164605048_164605140_164605202_164607080_164607153_164609626_164609683_164609782
ENSMUSG00000086453.8_164596059_164610140_2	chr2	-	897	10	Genic_Genomic	ENSMUSG00000086453.8	novel	490	5	NA	NA	1399	103	multi-exon	FALSE	non_canonical	0	0	junction_1	0	482	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCACATTCAGCGCTGCCTT	3538	False	NA	NA	False	NA	NA	NA	164610140	164596058	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_-_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171_164601218_164604988_164605048_164605140_164605202_164607087_164607153_164609626_164609683_164609782
ENSMUSG00000086454.8_104389524_104391285_1	chr2	+	1143	3	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	0	-7110	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	35.5	245	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	104389523	104391285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_104389552_104390068_104390321_104390422
ENSMUSG00000086454.8_104389524_104391285_2	chr2	+	1186	3	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	0	-7110	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	14	246	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	104389523	104391285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_104389595_104390068_104390321_104390422
ENSMUSG00000086454.8_104389524_104399270_1	chr2	+	1463	4	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	0	93	at_least_one_novel_splicesite	FALSE	canonical	3	184	junction_1	171.663106759205	2033	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_104389830_104390068_104390321_104398205_104398836_104398995
ENSMUSG00000086454.8_104389524_104399270_10	chr2	+	1614	3	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	0	93	intron_retention	FALSE	canonical	3	36	junction_1	270.5	2203	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_104389821_104390068_104390321_104398205
ENSMUSG00000086454.8_104389524_104399270_11	chr2	+	1389	4	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	0	93	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	219.022068903265	1479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_104389756_104390068_104390321_104398205_104398836_104398995
ENSMUSG00000086454.8_104389524_104399270_12	chr2	+	1388	3	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	0	93	intron_retention	FALSE	canonical	3	58	junction_1	259.5	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_104389595_104390068_104390321_104398205
ENSMUSG00000086454.8_104389524_104399270_13	chr2	+	627	4	NIC	ENSMUSG00000086454.8	novel	582	4	NA	NA	0	93	combination_of_known_junctions	FALSE	canonical	3	23	junction_3	244.852790241175	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_104389552_104390068_104390321_104398205_104398278_104398995
ENSMUSG00000086454.8_104389524_104399270_14	chr2	+	1144	3	NIC	ENSMUSG00000086454.8	novel	677	3	NA	NA	0	93	intron_retention	FALSE	canonical	3	23	junction_2	277	1809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_104390321_104398205_104398278_104398995
ENSMUSG00000086454.8_104389524_104399270_2	chr2	+	1623	3	FSM	ENSMUSG00000086454.8	ENSMUST00000146553.8	770	3	16	-869	0	93	multi-exon	FALSE	canonical	3	184	junction_1	196.5	2147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_104389830_104390068_104390321_104398205
ENSMUSG00000086454.8_104389524_104399270_3	chr2	+	1862	2	FSM	ENSMUSG00000086454.8	ENSMUST00000127237.2	707	2	-280	-875	0	93	multi-exon	FALSE	canonical	3	577	junction_1	0	2523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_104390321_104398205
ENSMUSG00000086454.8_104389524_104399270_4	chr2	+	1702	3	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	0	93	intron_retention	FALSE	canonical	3	251	junction_2	163	2799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_104390321_104398205_104398836_104398995
ENSMUSG00000086454.8_104389524_104399270_5	chr2	+	1228	4	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	0	93	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	214.187353086549	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_104389595_104390068_104390321_104398205_104398836_104398995
ENSMUSG00000086454.8_104389524_104399270_6	chr2	+	1185	4	NNC	ENSMUSG00000086454.8	novel	536	3	NA	NA	0	93	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	198.704694347052	681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_104389552_104390068_104390321_104398205_104398836_104398995
ENSMUSG00000086454.8_104389524_104399270_7	chr2	+	1345	3	FSM	ENSMUSG00000086454.8	ENSMUST00000127350.2	536	3	-13	-796	0	93	multi-exon	FALSE	canonical	3	101	junction_1	238	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_104389552_104390068_104390321_104398205
ENSMUSG00000086454.8_104389524_104399270_8	chr2	+	1549	3	FSM	ENSMUSG00000086454.8	ENSMUST00000136364.8	677	3	0	-872	0	93	multi-exon	FALSE	canonical	3	45	junction_1	266	1529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_104389756_104390068_104390321_104398205
ENSMUSG00000086454.8_104389524_104399270_9	chr2	+	831	4	NIC	ENSMUSG00000086454.8	novel	677	3	NA	NA	0	93	combination_of_known_junctions	FALSE	canonical	3	23	junction_3	256.130175236474	903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389523	104399270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_104389756_104390068_104390321_104398205_104398278_104398995
ENSMUSG00000086454.8_104389524_104401776_1	chr2	+	867	4	NIC	ENSMUSG00000086454.8	novel	582	4	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	2	29	junction_3	230.645952827175	1008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGGTTCAAGCCTTTAA	NA	False	NA	NA	False	AATAAA	-23	NA	104389523	104401776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_104389830_104390068_104390321_104398205_104398278_104401539
ENSMUSG00000086454.8_104389804_104399270_1	chr2	+	1183	4	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	0	93	at_least_one_novel_splicesite	FALSE	canonical	3	184	junction_1	171.663106759205	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	5	True	AAGAAA	-1	NA	104389803	104399270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_104389830_104390068_104390321_104398205_104398836_104398995
ENSMUSG00000086477.4_98342204_98352135_1	chr7	-	574	3	ISM	ENSMUSG00000086477.4	ENSMUST00000148776.2	1133	4	0	10661	0	6228	5prime_fragment	FALSE	canonical	3	5	junction_2	7.5	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCACACGTCAGTCTGTGA	9364	False	NA	NA	False	NA	NA	NA	98352135	98342203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_98342478_98342554_98342809_98352089
ENSMUSG00000086494.2_148678650_148679953_1	chr5	+	518	2	NNC	ENSMUSG00000086494.2	novel	550	2	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	0	219	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATCTACCCTTTGACCCA	NA	False	NA	NA	False	TTTAAA	-9	NA	148678649	148679953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_148678795_148679580
ENSMUSG00000086495.8_90865965_90876074_1	chr2	-	1627	8	Genic_Genomic	ENSMUSG00000086495.8	novel	537	3	NA	NA	8189	8472	multi-exon	FALSE	non_canonical	0	0	junction_1	0	338	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCAGCCCCTGTCTGCAGC	NA	False	NA	NA	False	NA	NA	NA	90876074	90865964	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_-_90866334_90866891_90867231_90872198_90872358_90873304_90873404_90873484_90873608_90874035_90874090_90875184_90875385_90875790
ENSMUSG00000086495.8_90866300_90876074_1	chr2	-	1292	8	Genic_Genomic	ENSMUSG00000086495.8	novel	537	3	NA	NA	8189	8137	multi-exon	FALSE	non_canonical	0	0	junction_1	0	242	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCTGTTACCAAGCAGCC	NA	False	NA	NA	False	NA	NA	NA	90876074	90866299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_-_90866334_90866891_90867231_90872198_90872358_90873304_90873404_90873484_90873608_90874035_90874090_90875184_90875385_90875790
ENSMUSG00000086506.2_55747878_55757708_1	chr13	-	1583	6	Genic_Genomic	ENSMUSG00000086506.2	novel	809	3	NA	NA	-5112	2117	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCCGCCCCGCCCCCCGG	NA	False	NA	NA	False	NA	NA	NA	55757708	55747877	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_-_55748006_55751832_55752196_55755009_55755236_55756154_55756239_55756510_55756616_55757031
ENSMUSG00000086506.2_55747878_55758256_1	chr13	-	2131	6	Genic_Genomic	ENSMUSG00000086506.2	novel	809	3	NA	NA	-5660	2117	multi-exon	FALSE	non_canonical	0	0	junction_1	0	102	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCCGCCCCGCCCCCCGG	NA	False	NA	NA	False	NA	NA	NA	55758256	55747877	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_-_55748006_55751832_55752196_55755009_55755236_55756154_55756239_55756510_55756616_55757031
ENSMUSG00000086561.2_142406812_142450099_1	chr3	-	1703	14	NIC	ENSMUSG00000086561.2	novel	674	2	NA	NA	343	42610	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	255	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAGGCGGGGTGGAGGCG	NA	False	NA	NA	False	NA	NA	NA	142450099	142406811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_142406937_142412449_142412557_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
ENSMUSG00000086561.2_142406812_142450288_1	chr3	-	1892	14	NIC	ENSMUSG00000086561.2	novel	674	2	NA	NA	154	42610	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	288	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAGGCGGGGTGGAGGCG	NA	False	NA	NA	False	NA	NA	NA	142450288	142406811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_142406937_142412449_142412557_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
ENSMUSG00000086582.2_39569508_39625269_1	chr6	-	469	5	NNC	ENSMUSG00000086582.2	novel	388	2	NA	NA	-55551	-8482	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	20366	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGTCCCGGCCCGTGACG	NA	False	NA	NA	False	NA	NA	NA	39625269	39569507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_39569647_39573384_39573530_39575199_39575296_39576325_39576391_39625245
ENSMUSG00000086582.2_39569522_39576405_1	chr6	-	446	4	NIC	ENSMUSG00000086582.2	novel	388	2	NA	NA	-6687	-8496	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	17191	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCGTCACTTCCCCGAGT	NA	False	NA	NA	False	NA	NA	NA	39576405	39569521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_39569647_39573384_39573530_39575199_39575296_39576325
ENSMUSG00000086582.2_39569522_39576405_2	chr6	-	434	4	NNC	ENSMUSG00000086582.2	novel	388	2	NA	NA	-6687	-8496	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	821	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCGTCACTTCCCCGAGT	NA	False	NA	NA	False	NA	NA	NA	39576405	39569521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_39569647_39573384_39573530_39575199_39575296_39576337
ENSMUSG00000086582.2_39569522_39576405_3	chr6	-	443	4	NNC	ENSMUSG00000086582.2	novel	388	2	NA	NA	-6687	-8496	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4462	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCGTCACTTCCCCGAGT	NA	False	NA	NA	False	NA	NA	NA	39576405	39569521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_39569647_39573384_39573530_39575199_39575300_39576332
ENSMUSG00000086582.2_39569522_39576405_4	chr6	-	440	4	NNC	ENSMUSG00000086582.2	novel	388	2	NA	NA	-6687	-8496	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2109	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCGTCACTTCCCCGAGT	NA	False	NA	NA	False	NA	NA	NA	39576405	39569521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_39569647_39573384_39573524_39575199_39575296_39576325
ENSMUSG00000086582.2_39569522_39576405_5	chr6	-	590	5	NNC	ENSMUSG00000086582.2	novel	388	2	NA	NA	-6687	-8496	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	246	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCGTCACTTCCCCGAGT	NA	False	NA	NA	False	NA	NA	NA	39576405	39569521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_39569647_39573384_39573530_39574140_39574281_39575199_39575300_39576325
ENSMUSG00000086582.2_39569522_39625269_1	chr6	-	471	5	NNC	ENSMUSG00000086582.2	novel	388	2	NA	NA	-55551	-8496	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	17600	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCGTCACTTCCCCGAGT	NA	False	NA	NA	False	NA	NA	NA	39625269	39569521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_39569647_39573384_39573530_39575199_39575296_39576325_39576407_39625245
ENSMUSG00000086629.9_107878285_107930503_1	chrX	+	738	3	FSM	ENSMUSG00000086629.9	ENSMUST00000131640.8	546	3	22	-214	0	1	multi-exon	FALSE	canonical	3	8	junction_2	2.5	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTTGTAACAGACAATGA	NA	False	NA	NA	False	AATAAA	-17	NA	107878284	107930503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_107878380_107879871_107879962_107929950
ENSMUSG00000086641.2_71578401_71580641_1	chr2	+	1163	2	FSM	ENSMUSG00000086641.2	ENSMUST00000127600.2	616	2	-410	-137	-410	97	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAGTCAGGCTTGGAATG	NA	False	NA	NA	False	NA	NA	NA	71578400	71580641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_71579277_71580354
ENSMUSG00000086649.2_111716795_111779851_1	chr13	+	1296	3	ISM	ENSMUSG00000086649.2	ENSMUST00000156236.2	621	4	0	1513	0	482	5prime_fragment	FALSE	canonical	3	32	junction_1	0.5	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTATGAGTTTTTCTTTTT	861	False	NA	NA	False	NA	NA	NA	111716794	111779851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_+_111716936_111717450_111717511_111778756
ENSMUSG00000086649.2_111716795_111781381_1	chr13	+	478	4	NNC	ENSMUSG00000086649.2	novel	621	4	NA	NA	0	17	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	12.0277457017791	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTACAGATTTGGGGT	861	False	NA	14	True	NA	NA	NA	111716794	111781381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_111716936_111717450_111717511_111778756_111778863_111781210
ENSMUSG00000086718.2_89084827_89090072_1	chr3	-	1445	9	NIC	ENSMUSG00000086718.2	novel	545	2	NA	NA	-472	3235	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	1810	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCCCTCCGGTGTGCTTG	4786	False	NA	NA	False	NA	NA	NA	89090072	89084826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_89084965_89085296_89085375_89086398_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
ENSMUSG00000086718.2_89084928_89090072_1	chr3	-	1344	9	NIC	ENSMUSG00000086718.2	novel	545	2	NA	NA	-472	3134	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1411	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCCCGGTGTCTCTGCT	4786	False	NA	NA	False	NA	NA	NA	89090072	89084927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_89084965_89085296_89085375_89086398_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
ENSMUSG00000086728.3_57038061_57041538_1	chr9	-	557	5	NIC	ENSMUSG00000086728.3	novel	1910	4	NA	NA	-2964	-794	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTCCCCGGAAGATCCTT	NA	False	NA	NA	False	NA	NA	NA	57041538	57038060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_57038174_57038442_57038570_57038815_57038940_57040805_57040877_57041416
ENSMUSG00000086745.2_102627547_102634487_1	chr3	-	474	3	ISM	ENSMUSG00000086745.2	ENSMUST00000146624.2	590	4	8246	0	8246	0	3prime_fragment	FALSE	canonical	2	4	junction_1	3	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGTTGAATTAGCAAATT	NA	False	NA	NA	False	NA	NA	NA	102634487	102627546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_102627764_102633643_102633728_102634314
ENSMUSG00000086748.2_10344094_10370045_1	chr2	-	700	5	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8807	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	256.084336693988	4562	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTGTGTTCATTCTGT	NA	False	NA	-13	True	AATAAA	-14	NA	10370045	10344093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_10344284_10346331_10346540_10350061_10350197_10351920_10352011_10369968
ENSMUSG00000086748.2_10344094_10370045_2	chr2	-	614	4	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8807	0	at_least_one_novel_splicesite	FALSE	canonical	3	118	junction_3	186.111674957687	4696	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTGTGTTCATTCTGT	NA	False	NA	-13	True	AATAAA	-14	NA	10370045	10344093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_10344284_10346331_10346540_10350061_10350197_10369964
ENSMUSG00000086796.3_25095503_25102531_1	chr13	+	683	5	NIC	ENSMUSG00000086796.3	novel	670	3	NA	NA	5900	4276	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTACGTTGGCACTGTCAA	NA	False	NA	NA	False	NA	NA	NA	25095502	25102531	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_25095750_25096230_25096290_25097726_25097897_25099744_25099904_25102483
ENSMUSG00000086807.9_138247360_138258487_1	chrX	-	520	4	NNC	ENSMUSG00000086807.9	novel	3511	20	NA	NA	0	880	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6.18241233033047	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGTCTACTGTAGATCAT	NA	False	NA	NA	False	AAAACA	-3	NA	138258487	138247359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_138247568_138255752_138255851_138257038_138257123_138258357
ENSMUSG00000086813.2_75607532_75609440_1	chr2	+	412	3	NNC	ENSMUSG00000086813.2	novel	1939	4	NA	NA	0	-3210	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGGTTCTCTCTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	75607531	75609440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_75607585_75607994_75608131_75609217
ENSMUSG00000086835.3_120927573_120930256_1	chr11	+	994	4	Genic_Genomic	ENSMUSG00000086835.3	novel	773	3	NA	NA	7345	-12927	multi-exon	FALSE	non_canonical	0	0	junction_1	0	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAAAGTTCACACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	120927572	120930256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr11_+_120927977_120928505_120928643_120928861_120929177_120930118
ENSMUSG00000086838.2_67815545_67878341_1	chr10	-	2459	12	NIC	ENSMUSG00000086838.2	novel	282	3	NA	NA	-15885	45735	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAACCGCTCGGCCGTACC	NA	False	NA	NA	False	NA	NA	NA	67878341	67815544	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_67815643_67823136_67823334_67833394_67833454_67837753_67837808_67839033_67839152_67841329_67841525_67853635_67853731_67861342_67861450_67862347_67862480_67871618_67871782_67875860_67875969_67877208
ENSMUSG00000086841.2_62493703_62495633_1	chr11	+	472	5	NNC	ENSMUSG00000086841.2	novel	462	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_1	1867.01606849004	62974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCCAGTGTTTTGGATG	NA	False	NA	NA	False	AATAAA	-18	NA	62493702	62495633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_62493860_62494060_62494109_62494422_62494473_62495228_62495293_62495480
ENSMUSG00000086877.8_20817901_20828217_1	chrX	+	836	7	NIC	ENSMUSG00000086877.8	novel	1144	6	NA	NA	-10022	-24745	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	5084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGTATGAGCCGCGGCTT	NA	False	NA	NA	False	NA	NA	NA	20817900	20828217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
ENSMUSG00000086877.8_20818162_20828217_1	chrX	+	575	7	NIC	ENSMUSG00000086877.8	novel	1144	6	NA	NA	-9761	-24745	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	4956	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGTATGAGCCGCGGCTT	NA	False	NA	NA	False	NA	NA	NA	20818161	20828217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
ENSMUSG00000086877.8_20818162_20828217_2	chrX	+	759	6	NIC	ENSMUSG00000086877.8	novel	1144	6	NA	NA	-9761	-24745	intron_retention	FALSE	non_canonical	0	0	junction_1	0	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGTATGAGCCGCGGCTT	NA	False	NA	NA	False	NA	NA	NA	20818161	20828217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
ENSMUSG00000086877.8_20818162_20828217_3	chrX	+	533	7	NNC	ENSMUSG00000086877.8	novel	1144	6	NA	NA	-9761	-24745	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	464	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGTATGAGCCGCGGCTT	NA	False	NA	NA	False	NA	NA	NA	20818161	20828217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827960_20828026_20828172
ENSMUSG00000086910.2_59266534_59271148_1	chr11	+	829	3	FSM	ENSMUSG00000086910.2	ENSMUST00000133698.2	659	3	247	-417	247	417	multi-exon	FALSE	canonical	1	2	junction_1	1	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTTTATCCATGATCTC	NA	False	NA	NA	False	NA	NA	NA	59266533	59271148	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_59266712_59269251_59269320_59270565
ENSMUSG00000086938.10_5472837_5474586_1	chr19	+	833	6	NIC	ENSMUSG00000086938.10	novel	2106	5	NA	NA	15923	1711	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	329	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGGCGTCAGGCCGTGAA	8754	False	NA	NA	False	NA	NA	NA	5472836	5474586	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_5473054_5473358_5473448_5473587_5473703_5473799_5473920_5474209_5474304_5474388
ENSMUSG00000086938.10_5472837_5474807_1	chr19	+	815	7	NIC	ENSMUSG00000086938.10	novel	2106	5	NA	NA	15923	1932	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	458	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCGCCGGCCCGCCGCGGT	8754	False	NA	NA	False	NA	NA	NA	5472836	5474807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_5473054_5473358_5473448_5473587_5473703_5473799_5473920_5474209_5474304_5474388_5474462_5474700
ENSMUSG00000086938.10_5472837_5475069_1	chr19	+	737	7	NNC	ENSMUSG00000086938.10	novel	2106	5	NA	NA	15923	2194	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	480	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGCCCCTGGACGCTGCCC	8754	False	NA	NA	False	NA	NA	NA	5472836	5475069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_5473054_5473358_5473448_5473587_5473682_5473799_5473920_5474209_5474304_5474388_5474462_5475019
ENSMUSG00000086993.2_97345841_97368086_2	chr7	-	1499	7	NNC	ENSMUSG00000086993.2	novel	706	2	NA	NA	-22051	-751	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4515	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGAGGGCCTTAGCATGCG	NA	False	NA	NA	False	NA	NA	NA	97368086	97345840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_97346077_97354795_97354933_97360906_97361006_97361838_97361942_97363113_97363288_97365657_97365747_97367425
ENSMUSG00000086993.2_97345902_97368086_2	chr7	-	1432	7	NNC	ENSMUSG00000086993.2	novel	706	2	NA	NA	-22051	-812	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	765	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCGGCTCGCACGGAGCTG	NA	False	NA	NA	False	NA	NA	NA	97368086	97345901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_97346077_97354795_97354933_97360906_97361006_97361833_97361942_97363113_97363288_97365668_97365747_97367425
ENSMUSG00000086993.2_97345902_97368086_3	chr7	-	1443	7	NIC	ENSMUSG00000086993.2	novel	706	2	NA	NA	-22051	-812	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	5178	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCGGCTCGCACGGAGCTG	NA	False	NA	NA	False	NA	NA	NA	97368086	97345901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_97346077_97354795_97354933_97360906_97361006_97361833_97361942_97363113_97363288_97365657_97365747_97367425
ENSMUSG00000086993.2_97345902_97368086_4	chr7	-	1438	7	NNC	ENSMUSG00000086993.2	novel	706	2	NA	NA	-22051	-812	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1256	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCGGCTCGCACGGAGCTG	NA	False	NA	NA	False	NA	NA	NA	97368086	97345901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_97346077_97354795_97354933_97360906_97361006_97361838_97361942_97363113_97363288_97365657_97365747_97367425
ENSMUSG00000087050.2_77923175_77928692_1	chr11	-	1710	5	NIC	ENSMUSG00000087050.2	novel	2429	2	NA	NA	-5201	-2337	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGGGCCTCGTCGCTCCCG	NA	False	NA	NA	False	NA	NA	NA	77928692	77923174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_77923325_77923410_77923530_77924838_77924963_77925100_77925413_77927687
ENSMUSG00000087060.8_16885154_16901099_2	chr11	-	1124	5	NIC	ENSMUSG00000087060.8	novel	600	6	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	6	junction_3	9.28372231381357	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGTGTATCGTTTATTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16901099	16885153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_16885927_16886454_16886565_16887372_16887485_16900881_16900931_16901019
ENSMUSG00000087060.8_16885154_16901099_3	chr11	-	1012	4	FSM	ENSMUSG00000087060.8	ENSMUST00000123734.8	787	4	-57	-168	0	0	multi-exon	FALSE	canonical	3	11	junction_1	8.25967446224258	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGTGTATCGTTTATTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16901099	16885153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_16885927_16886454_16886565_16900881_16900931_16901019
ENSMUSG00000087075.3_111368433_111378524_1	chr12	+	794	4	NNC	ENSMUSG00000087075.3	novel	670	4	NA	NA	-4810	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	1.24721912892465	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTGCTTCTGCTAGTGG	NA	False	NA	NA	False	NA	NA	NA	111368432	111378524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_111368616_111374958_111375046_111376620_111376778_111378157
ENSMUSG00000087084.2_140107783_140109797_1	chr4	+	645	2	ISM	ENSMUSG00000087084.2	ENSMUST00000126252.2	1720	3	-158	3088	-158	-3088	5prime_fragment	FALSE	canonical	3	28	junction_1	0	325	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCTTTTTTTGGCTGGGG	NA	False	NA	NA	False	NA	NA	NA	140107782	140109797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_140108031_140109400
ENSMUSG00000087097.2_23539512_23553378_1	chr13	+	2605	4	NIC	ENSMUSG00000087097.2	novel	881	4	NA	NA	41817	-16591	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCCCCGAGGCACGTAACT	4092	False	NA	NA	False	NA	NA	NA	23539511	23553378	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_23541884_23546972_23547046_23552289_23552376_23553304
ENSMUSG00000087128.8_94349168_94365417_1	chr4	-	993	6	NNC	ENSMUSG00000087128.8	novel	925	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	6.01331855134916	93	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATGTTCTGGGCTGGA	NA	False	NA	NA	False	CATAAA	-17	NA	94365417	94349167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_94349585_94350122_94350199_94352666_94352793_94353653_94353778_94356020_94356103_94365249
ENSMUSG00000087132.9_4475695_4489449_1	chr19	+	1125	5	NIC	ENSMUSG00000087132.9	novel	1402	5	NA	NA	-13336	-8442	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGCCCGGCGGGACAGGA	NA	False	NA	NA	False	NA	NA	NA	4475694	4489449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_4476285_4476654_4476790_4482082_4482193_4482795_4482884_4489247
ENSMUSG00000087135.8_40692044_40694757_1	chr9	-	742	3	ISM	ENSMUSG00000087135.8	ENSMUST00000149386.8	819	4	720	6	0	0	3prime_fragment	FALSE	canonical	3	11	junction_2	1	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTCTGTGTGTGACTGCC	NA	False	NA	NA	False	AATAAA	-23	NA	40694757	40692043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_40692492_40694218_40694287_40694531
ENSMUSG00000087135.8_40692044_40694951_1	chr9	-	936	3	ISM	ENSMUSG00000087135.8	ENSMUST00000149386.8	819	4	526	6	-194	0	3prime_fragment	FALSE	canonical	3	11	junction_2	1	132	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTCTGTGTGTGACTGCC	NA	False	NA	NA	False	AATAAA	-23	NA	40694951	40692043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_40692492_40694218_40694287_40694531
ENSMUSG00000087138.2_44640646_44647003_1	chr7	+	787	6	NIC	ENSMUSG00000087138.2	novel	899	3	NA	NA	4249	2982	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCAACGTCGAAGGGGTG	NA	False	NA	NA	False	NA	NA	NA	44640645	44647003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_44640879_44643603_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886
ENSMUSG00000087139.2_109682383_109704900_1	chr11	+	797	5	NIC	ENSMUSG00000087139.2	novel	918	2	NA	NA	-5626	11278	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTAGGTCACCAGGCCTCA	7515	False	NA	NA	False	NA	NA	NA	109682382	109704900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_109682621_109684931_109685106_109688103_109688238_109704384_109704573_109704837
ENSMUSG00000087165.8_57686325_57692268_1	chr11	-	505	2	NIC	ENSMUSG00000087165.8	novel	714	4	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTTGTCTCAGTGATT	NA	False	NA	-3	True	NA	NA	NA	57692268	57686324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_57686621_57692059
ENSMUSG00000087165.8_57686325_57692268_2	chr11	-	653	3	FSM	ENSMUSG00000087165.8	ENSMUST00000140069.2	502	3	-44	-107	-25	0	multi-exon	FALSE	canonical	3	13	junction_2	6.5	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTTGTCTCAGTGATT	NA	False	NA	-3	True	NA	NA	NA	57692268	57686324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_57686621_57686851_57687000_57692059
ENSMUSG00000087166.10_98615030_98622282_2	chr4	+	1027	3	ISM	ENSMUSG00000087166.10	ENSMUST00000154279.3	2942	5	45	4435	0	401	5prime_fragment	FALSE	canonical	3	363	junction_2	35	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGGAAGAAGAAACGAGCT	NA	False	NA	NA	False	NA	NA	NA	98615029	98622282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_98615078_98615631_98615708_98621379
ENSMUSG00000087168.2_5062743_5073820_1	chr16	+	1392	8	Fusion	ENSMUSG00000087168.2_ENSMUSG00000039427.15	novel	1669	12	NA	NA	4805	11044	multi-exon	FALSE	non_canonical	0	0	junction_1	0	490	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGAAACGGGCGGAAGC	NA	False	NA	NA	False	NA	NA	NA	5062742	5073820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr16_+_5063250_5065340_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ENSMUSG00000087168.2_5062955_5073820_1	chr16	+	1180	8	NNC	ENSMUSG00000087168.2	novel	4814	2	NA	NA	-9695	-33665	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	184	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGAAACGGGCGGAAGC	NA	False	NA	NA	False	NA	NA	NA	5062954	5073820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_5063250_5065340_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ENSMUSG00000087174.8_104087409_104113666_1	chrX	-	756	5	NIC	ENSMUSG00000087174.8	novel	3287	6	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	2	13	junction_4	26.7803566070357	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTGTGGATTTACATGTA	NA	False	NA	-3	True	AATAAA	-17	NA	104113666	104087408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_104087718_104091514_104091617_104110364_104110484_104112069_104112235_104113605
ENSMUSG00000087174.8_104087409_104113666_2	chrX	-	612	5	NIC	ENSMUSG00000087174.8	novel	709	6	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	44.3790491110389	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTGTGGATTTACATGTA	NA	False	NA	-3	True	AATAAA	-17	NA	104113666	104087408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_104087718_104110364_104110484_104112176_104112235_104113216_104113282_104113605
ENSMUSG00000087174.8_104087409_104113720_1	chrX	-	547	4	ISM	ENSMUSG00000087174.8	ENSMUST00000147478.8	311	5	-71	532	-6	0	5prime_fragment	FALSE	canonical	3	5	junction_1	55.1180551180827	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTGTGGATTTACATGTA	NA	False	NA	-3	True	AATAAA	-17	NA	104113720	104087408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_104087718_104112176_104112235_104113216_104113282_104113605
ENSMUSG00000087179.9_156615101_156681728_1	chr2	-	432	4	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	-8	59868	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_1	67.4009561422454	130	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTGGTCATAGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	156681728	156615100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_156615230_156679742_156679834_156680337_156680457_156681635
ENSMUSG00000087179.9_156631598_156681812_1	chr2	-	1068	4	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	0	134	multi-exon	FALSE	non_canonical	0	0	junction_3	79.3011139055856	301	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTTTTTAATGTCTCT	NA	False	NA	NA	False	NA	NA	NA	156681812	156631597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_-_156632366_156679742_156679834_156680337_156680454_156681719
ENSMUSG00000087179.9_156644136_156681728_1	chr2	-	571	5	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	-8	30833	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	68.0418070012841	714	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGTCTTAGCTGCATTT	NA	False	NA	NA	False	NA	NA	NA	156681728	156644135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_156644337_156645656_156645724_156679742_156679834_156680337_156680457_156681635
ENSMUSG00000087179.9_156652984_156681728_1	chr2	-	474	4	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	-8	21985	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	71.1243043316887	70	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTATGAGTGTTTTGCTT	NA	False	NA	NA	False	AATAAA	-19	NA	156681728	156652983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_156653155_156679742_156679834_156680337_156680457_156681635
ENSMUSG00000087190.3_91722109_91728472_1	chr16	+	713	7	NNC	ENSMUSG00000087190.3	novel	1871	6	NA	NA	-6016	-31331	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6755	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAAAGAGACTACTGG	NA	False	NA	NA	False	NA	NA	NA	91722108	91728472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_91722280_91722428_91722516_91723361_91723460_91723740_91723871_91725786_91725898_91727241_91727293_91728407
ENSMUSG00000087190.3_91722109_91728472_10	chr16	+	712	6	NNC	ENSMUSG00000087190.3	novel	1871	6	NA	NA	-6016	-31331	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1220	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAAAGAGACTACTGG	NA	False	NA	NA	False	NA	NA	NA	91722108	91728472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725933_91728407
ENSMUSG00000087190.3_91722109_91728472_2	chr16	+	710	7	NNC	ENSMUSG00000087190.3	novel	1871	6	NA	NA	-6016	-31331	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7978	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAAAGAGACTACTGG	NA	False	NA	NA	False	NA	NA	NA	91722108	91728472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_91722280_91722428_91722516_91723346_91723460_91723740_91723859_91725792_91725898_91727241_91727293_91728407
ENSMUSG00000087190.3_91722109_91728472_3	chr16	+	722	7	NNC	ENSMUSG00000087190.3	novel	1871	6	NA	NA	-6016	-31331	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	22042	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAAAGAGACTACTGG	NA	False	NA	NA	False	NA	NA	NA	91722108	91728472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_91722280_91722434_91722516_91723346_91723460_91723740_91723871_91725786_91725898_91727241_91727293_91728407
ENSMUSG00000087190.3_91722109_91728472_4	chr16	+	708	6	NNC	ENSMUSG00000087190.3	novel	1871	6	NA	NA	-6016	-31331	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	687	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAAAGAGACTACTGG	NA	False	NA	NA	False	NA	NA	NA	91722108	91728472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725792_91725898_91728370
ENSMUSG00000087190.3_91722109_91728472_5	chr16	+	714	6	NNC	ENSMUSG00000087190.3	novel	1871	6	NA	NA	-6016	-31331	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1460	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAAAGAGACTACTGG	NA	False	NA	NA	False	NA	NA	NA	91722108	91728472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725898_91728370
ENSMUSG00000087190.3_91722109_91728472_6	chr16	+	720	7	NNC	ENSMUSG00000087190.3	novel	1871	6	NA	NA	-6016	-31331	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7905	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAAAGAGACTACTGG	NA	False	NA	NA	False	NA	NA	NA	91722108	91728472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725886_91727237_91727293_91728407
ENSMUSG00000087190.3_91722109_91728472_7	chr16	+	701	7	NNC	ENSMUSG00000087190.3	novel	1871	6	NA	NA	-6016	-31331	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1890	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAAAGAGACTACTGG	NA	False	NA	NA	False	NA	NA	NA	91722108	91728472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725813_91725898_91727241_91727293_91728407
ENSMUSG00000087190.3_91722109_91728472_8	chr16	+	718	7	NNC	ENSMUSG00000087190.3	novel	1871	6	NA	NA	-6016	-31331	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	14519	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAAAGAGACTACTGG	NA	False	NA	NA	False	NA	NA	NA	91722108	91728472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725898_91727241_91727293_91728417
ENSMUSG00000087190.3_91722109_91728472_9	chr16	+	710	7	NNC	ENSMUSG00000087190.3	novel	1871	6	NA	NA	-6016	-31331	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3134	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAAAGAGACTACTGG	NA	False	NA	NA	False	NA	NA	NA	91722108	91728472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725886_91727247_91727293_91728407
ENSMUSG00000087193.8_7917830_7937416_1	chrX	+	609	2	NIC	ENSMUSG00000087193.8	novel	1177	4	NA	NA	0	-1064	combination_of_known_splicesites	FALSE	canonical	3	67	junction_1	0	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCTGCCGTGGCTCCCAG	NA	False	NA	3	True	NA	NA	NA	7917829	7937416	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_7917897_7936874
ENSMUSG00000087193.8_7917830_7937416_2	chrX	+	680	3	ISM	ENSMUSG00000087193.8	ENSMUST00000188632.2	1177	4	0	1779	0	-1064	5prime_fragment	FALSE	canonical	3	56	junction_1	9.5	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCTGCCGTGGCTCCCAG	NA	False	NA	3	True	NA	NA	NA	7917829	7937416	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_+_7917897_7926454_7926526_7936874
ENSMUSG00000087193.8_7917830_7939365_1	chrX	+	1347	4	FSM	ENSMUSG00000087193.8	ENSMUST00000188632.2	1177	4	0	-170	0	167	multi-exon	FALSE	canonical	3	56	junction_1	23.6971634495683	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTCACTTTTAAAAATC	NA	False	NA	NA	False	ATTAAA	-14	NA	7917829	7939365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7917897_7926454_7926526_7936874_7937304_7938585
ENSMUSG00000087193.8_7917830_7941112_1	chrX	+	795	3	NIC	ENSMUSG00000087193.8	novel	1177	4	NA	NA	0	254	combination_of_known_splicesites	TRUE	canonical	3	17	junction_2	25	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAATTCTGCCAGTCATT	NA	False	NA	NA	False	CATAAA	-18	NA	7917829	7941112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_7917897_7936874_7937304_7940813
ENSMUSG00000087193.8_7917830_7941239_1	chrX	+	922	3	NIC	ENSMUSG00000087193.8	novel	1177	4	NA	NA	0	381	combination_of_known_splicesites	FALSE	canonical	3	17	junction_2	25	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATGTCCGTTTCCATCA	NA	False	NA	NA	False	AATAAA	-21	NA	7917829	7941239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_7917897_7936874_7937304_7940813
ENSMUSG00000087193.8_7936668_7940858_1	chrX	+	1044	3	NIC	ENSMUSG00000087193.8	novel	801	4	NA	NA	18838	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGCGTGGCCGGGGACGC	NA	False	NA	NA	False	NA	NA	NA	7936667	7940858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_7937490_7938561_7938708_7940782
ENSMUSG00000087238.2_118840928_118854426_1	chr4	-	684	2	FSM	ENSMUSG00000087238.2	ENSMUST00000137353.2	326	2	-31	-327	-31	327	multi-exon	FALSE	canonical	1	1	junction_1	0	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTGTGGTGGTGCACACC	NA	False	NA	NA	False	NA	NA	NA	118854426	118840927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_118841448_118854262
ENSMUSG00000087249.2_59700906_59709188_1	chr11	+	642	2	FSM	ENSMUSG00000087249.2	ENSMUST00000151825.2	771	2	0	129	0	-129	multi-exon	FALSE	canonical	1	5	junction_1	0	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGTAATGTCTTTCCT	NA	False	NA	NA	False	AATAAA	-18	NA	59700905	59709188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_59701088_59708728
ENSMUSG00000087249.2_59708621_59730638_1	chr11	+	1615	12	Fusion	ENSMUSG00000087249.2_ENSMUSG00000032615.15	novel	1316	5	NA	NA	7715	21321	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1311	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCTGGAGGCAGGTTGT	2251	False	NA	NA	False	AAAAAG	-36	NA	59708620	59730638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr11_+_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59715100_59715275_59717115_59717257_59718671_59718852_59720972_59721066_59723709_59723760_59723857_59723971_59727721_59727847_59730495
ENSMUSG00000087260.6_107186315_107191110_1	chr3	+	455	4	FSM	ENSMUSG00000087260.6	ENSMUST00000199317.2	743	4	0	288	0	-285	multi-exon	FALSE	canonical	3	1062	junction_2	64.8194072447099	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAATGTCCAATGTGGACT	3151	False	NA	NA	False	ATTAAA	-22	NA	107186314	107191110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_107186430_107187185_107187248_107189224_107189343_107190950
ENSMUSG00000087260.6_107186315_107191398_1	chr3	+	736	4	NNC	ENSMUSG00000087260.6	novel	743	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	535.8496887084	15710	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGTTCATTTCTGGTCT	3151	False	NA	12	True	AATAAA	-16	NA	107186314	107191398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_107186430_107187192_107187248_107189224_107189343_107190950
ENSMUSG00000087260.6_107186315_107191398_2	chr3	+	764	4	NNC	ENSMUSG00000087260.6	novel	743	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	550.836333829448	15474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGTTCATTTCTGGTCT	3151	False	NA	12	True	AATAAA	-16	NA	107186314	107191398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_107186430_107187185_107187248_107189203_107189343_107190950
ENSMUSG00000087269.2_31041061_31042303_1	chr2	-	512	2	FSM	ENSMUSG00000087269.2	ENSMUST00000133550.2	920	2	0	408	0	-408	multi-exon	FALSE	canonical	3	14	junction_1	0	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTTTATGTTGTTTG	8886	False	NA	NA	False	TATAAA	-22	NA	31042303	31041060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_31041263_31041993
ENSMUSG00000087283.2_60214615_60242923_1	chr2	+	507	4	NNC	ENSMUSG00000087283.2	novel	566	3	NA	NA	-27254	0	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_1	58.0344725141876	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGTGGTATACCCTTAT	2632	False	NA	NA	False	NA	NA	NA	60214614	60242923	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_60214668_60241980_60242062_60242190_60242353_60242712
ENSMUSG00000087283.2_60214615_60242923_2	chr2	+	502	4	NNC	ENSMUSG00000087283.2	novel	566	3	NA	NA	-27254	0	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_3	73.3757453113766	507	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGTGGTATACCCTTAT	2632	False	NA	NA	False	NA	NA	NA	60214614	60242923	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_60214668_60241980_60242062_60242190_60242353_60242717
ENSMUSG00000087283.2_60241869_60242923_1	chr2	+	561	3	NNC	ENSMUSG00000087283.2	novel	566	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_2	87	1005	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGTGGTATACCCTTAT	9346	False	NA	NA	False	NA	NA	NA	60241868	60242923	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_60242062_60242190_60242353_60242717
ENSMUSG00000087283.2_60241869_60242923_2	chr2	+	695	2	NIC	ENSMUSG00000087283.2	novel	566	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	174	junction_1	0	787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGTGGTATACCCTTAT	9346	False	NA	NA	False	NA	NA	NA	60241868	60242923	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_60242353_60242712
ENSMUSG00000087293.2_180576565_180596513_1	chr2	+	971	7	NIC	ENSMUSG00000087293.2	novel	667	3	NA	NA	-19692	-12092	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	425	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCTCCGCCCCGCATTGC	NA	False	NA	NA	False	NA	NA	NA	180576564	180596513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_180576823_180577735_180577821_180578943_180579005_180584822_180585021_180585533_180585615_180585869_180586008_180596363
ENSMUSG00000087293.2_180576565_180596513_2	chr2	+	833	6	NIC	ENSMUSG00000087293.2	novel	667	3	NA	NA	-19692	-12092	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	61	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCTCCGCCCCGCATTGC	NA	False	NA	NA	False	NA	NA	NA	180576564	180596513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_180576823_180577735_180577821_180578943_180579005_180584822_180585021_180585533_180585615_180596363
ENSMUSG00000087307.2_123557021_123565010_1	chr4	+	590	3	NNC	ENSMUSG00000087307.2	novel	431	2	NA	NA	-2653	0	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_1	5	804	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGACCATTGTGGTTCAC	NA	False	NA	9	True	NA	NA	NA	123557020	123565010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_123557174_123561402_123561541_123564711
ENSMUSG00000087307.2_123557083_123562521_1	chr4	+	334	3	NNC	ENSMUSG00000087307.2	novel	678	3	NA	NA	-2591	1	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	10.5	378	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCAGCCGCCTTTTATTG	NA	False	NA	NA	False	NA	NA	NA	123557082	123562521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_123557174_123561402_123561541_123562416
ENSMUSG00000087307.2_123557083_123565155_1	chr4	+	673	3	NNC	ENSMUSG00000087307.2	novel	431	2	NA	NA	-2591	145	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_1	5	600	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATCAAACCTCATTGGGCA	NA	False	NA	NA	False	GATAAA	-25	NA	123557082	123565155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_123557174_123561402_123561541_123564711
ENSMUSG00000087307.2_123557083_123569710_1	chr4	+	792	4	NNC	ENSMUSG00000087307.2	novel	678	3	NA	NA	-2591	4700	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_3	18.8325958557674	241	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCCTCTCTTTTCTGGG	NA	False	NA	NA	False	AATAAA	-14	NA	123557082	123569710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_123557174_123561402_123561541_123564711_123564853_123569288
ENSMUSG00000087327.2_124689299_124693913_1	chr6	-	1312	9	NIC	ENSMUSG00000087327.2	novel	643	3	NA	NA	1881	3237	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	9995	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATCGGCGGCCTTAGAGC	NA	False	NA	NA	False	NA	NA	NA	124693913	124689298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692994_124693568
ENSMUSG00000087327.2_124689299_124693913_2	chr6	-	1318	9	NNC	ENSMUSG00000087327.2	novel	643	3	NA	NA	1881	3237	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3028	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATCGGCGGCCTTAGAGC	NA	False	NA	NA	False	NA	NA	NA	124693913	124689298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692135_124692546_124692623_124692916_124692994_124693568
ENSMUSG00000087327.2_124689299_124693913_3	chr6	-	1315	9	NNC	ENSMUSG00000087327.2	novel	643	3	NA	NA	1881	3237	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	970	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATCGGCGGCCTTAGAGC	NA	False	NA	NA	False	NA	NA	NA	124693913	124689298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692137_124692551_124692623_124692916_124692994_124693568
ENSMUSG00000087332.2_99457737_99461961_1	chr4	+	1067	2	FSM	ENSMUSG00000087332.2	ENSMUST00000132108.2	354	2	0	-713	0	713	multi-exon	TRUE	canonical	3	84	junction_1	0	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGATAGCTGGTCTCTTCA	NA	False	NA	3	True	AATAAA	-24	NA	99457736	99461961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_99457876_99461033
ENSMUSG00000087332.2_99457737_99462879_1	chr4	+	1985	2	FSM	ENSMUSG00000087332.2	ENSMUST00000132108.2	354	2	0	-1631	0	1631	multi-exon	FALSE	canonical	3	84	junction_1	0	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTTGCGAATGGATTAAG	NA	False	NA	5	True	AATAAA	-16	NA	99457736	99462879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_99457876_99461033
ENSMUSG00000087338.3_88814846_88832486_1	chr11	+	1617	9	Genic_Genomic	ENSMUSG00000087338.3	novel	811	5	NA	NA	18092	5599	multi-exon	FALSE	non_canonical	0	0	junction_1	0	430	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCAGGCAGTGGTTGCT	NA	False	NA	NA	False	NA	NA	NA	88814845	88832486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr11_+_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88832324
ENSMUSG00000087338.3_88814846_88846291_1	chr11	+	2089	12	Genic_Genomic	ENSMUSG00000087338.3	novel	811	5	NA	NA	18092	19404	multi-exon	FALSE	non_canonical	0	0	junction_1	0	625	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGGCCCTGACACTCCT	NA	False	NA	NA	False	NA	NA	NA	88814845	88846291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr11_+_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826808_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
ENSMUSG00000087338.3_88814846_88846291_2	chr11	+	2092	13	Genic_Genomic	ENSMUSG00000087338.3	novel	811	5	NA	NA	18092	19404	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1639	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGGCCCTGACACTCCT	NA	False	NA	NA	False	NA	NA	NA	88814845	88846291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr11_+_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827844_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
ENSMUSG00000087338.3_88814846_88846291_3	chr11	+	2092	13	Genic_Genomic	ENSMUSG00000087338.3	novel	811	5	NA	NA	18092	19404	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3031	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGGCCCTGACACTCCT	NA	False	NA	NA	False	NA	NA	NA	88814845	88846291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr11_+_88815551_88819990_88820150_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
ENSMUSG00000087338.3_88814846_88846291_4	chr11	+	2091	13	Genic_Genomic	ENSMUSG00000087338.3	novel	811	5	NA	NA	18092	19404	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2654	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGGCCCTGACACTCCT	NA	False	NA	NA	False	NA	NA	NA	88814845	88846291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr11_+_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835351_88837970_88838061_88843231_88843381_88846119
ENSMUSG00000087338.3_88815072_88846291_1	chr11	+	1871	13	Genic_Genomic	ENSMUSG00000087338.3	novel	811	5	NA	NA	18318	19404	multi-exon	FALSE	non_canonical	0	0	junction_1	0	300	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGGCCCTGACACTCCT	NA	False	NA	NA	False	NA	NA	NA	88815071	88846291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr11_+_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
ENSMUSG00000087341.5_108587182_108600123_1	chr6	-	779	5	NNC	ENSMUSG00000087341.5	novel	544	4	NA	NA	-9167	112	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	9.35414346693485	357	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACAGAAGTCTTGTGTCA	NA	False	NA	-7	True	AATAAA	-14	NA	108600123	108587181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_108587583_108589268_108589394_108590092_108590176_108590909_108590955_108599998
ENSMUSG00000087341.5_108587182_108600123_2	chr6	-	861	6	NNC	ENSMUSG00000087341.5	novel	544	4	NA	NA	-9167	112	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	16.2061716639063	358	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACAGAAGTCTTGTGTCA	NA	False	NA	-7	True	AATAAA	-14	NA	108600123	108587181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_108587583_108589268_108589394_108590092_108590176_108590321_108590404_108590909_108590955_108599998
ENSMUSG00000087352.2_132257866_132260906_1	chr4	+	492	3	Genic_Genomic	ENSMUSG00000087352.2	novel	485	2	NA	NA	-2132	-6	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9730	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGGCGTGGCTGCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	132257865	132260906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_132258152_132260606_132260699_132260792
ENSMUSG00000087352.2_132257866_132260906_2	chr4	+	462	3	Genic_Genomic	ENSMUSG00000087352.2	novel	485	2	NA	NA	-2132	-6	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1922	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGGCGTGGCTGCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	132257865	132260906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_132258131_132260615_132260699_132260792
ENSMUSG00000087352.2_132257866_132260906_3	chr4	+	455	3	Genic_Genomic	ENSMUSG00000087352.2	novel	485	2	NA	NA	-2132	-6	multi-exon	FALSE	non_canonical	0	0	junction_1	0	917	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGGCGTGGCTGCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	132257865	132260906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_132258135_132260606_132260691_132260804
ENSMUSG00000087352.2_132257866_132260937_1	chr4	+	497	3	Genic_Genomic	ENSMUSG00000087352.2	novel	485	2	NA	NA	-2132	25	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16173	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCGAGGGCGGCTGAAC	NA	False	NA	NA	False	NA	NA	NA	132257865	132260937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_132258135_132260615_132260699_132260792
ENSMUSG00000087352.2_132257866_132260937_2	chr4	+	498	3	Genic_Genomic	ENSMUSG00000087352.2	novel	485	2	NA	NA	-2132	25	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9534	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCGAGGGCGGCTGAAC	NA	False	NA	NA	False	NA	NA	NA	132257865	132260937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_132258135_132260606_132260691_132260792
ENSMUSG00000087352.2_132257866_132260937_3	chr4	+	494	3	Genic_Genomic	ENSMUSG00000087352.2	novel	485	2	NA	NA	-2132	25	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5685	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCGAGGGCGGCTGAAC	NA	False	NA	NA	False	NA	NA	NA	132257865	132260937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_132258135_132260606_132260699_132260804
ENSMUSG00000087352.2_132257866_132275316_1	chr4	+	979	4	Genic_Genomic	ENSMUSG00000087352.2	novel	485	2	NA	NA	-2132	14404	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41810	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGAAAATGCTGTA	NA	False	NA	NA	False	GATAAA	-36	NA	132257865	132275316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_132258135_132260606_132260699_132260792_132260965_132274870
ENSMUSG00000087352.2_132257866_132275316_2	chr4	+	1001	4	Genic_Genomic	ENSMUSG00000087352.2	novel	485	2	NA	NA	-2132	14404	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41794	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGAAAATGCTGTA	NA	False	NA	NA	False	GATAAA	-36	NA	132257865	132275316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr4_+_132258135_132260606_132260699_132260792_132260940_132274823
ENSMUSG00000087354.2_90811677_90820292_1	chr16	+	903	6	NIC	ENSMUSG00000087354.2	novel	2675	2	NA	NA	1068	6661	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	116	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATCCTTGAAGTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	90811676	90820292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_90812067_90813733_90813889_90816050_90816198_90818938_90819006_90819556_90819634_90820225
ENSMUSG00000087354.2_90811804_90820292_1	chr16	+	776	6	NIC	ENSMUSG00000087354.2	novel	2675	2	NA	NA	1195	6661	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATCCTTGAAGTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	90811803	90820292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_90812067_90813733_90813889_90816050_90816198_90818938_90819006_90819556_90819634_90820225
ENSMUSG00000087356.2_34135020_34153920_1	chr6	+	1422	10	Genic_Genomic	ENSMUSG00000087356.2	novel	1742	5	NA	NA	6156	2750	multi-exon	FALSE	non_canonical	0	0	junction_1	0	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGCAGCTGCCACCGACGC	NA	False	NA	NA	False	NA	NA	NA	34135019	34153920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_34135562_34136367_34136444_34137407_34137484_34138610_34138721_34140263_34140325_34140523_34140606_34143308_34143359_34144559_34144663_34147395_34147510_34153712
ENSMUSG00000087367.2_45736173_45738003_2	chr19	+	1157	5	NIC	ENSMUSG00000087367.2	novel	751	2	NA	NA	-1774	-2746	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGTGAGCGCCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	45736172	45738003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495
ENSMUSG00000087367.2_45736173_45738003_3	chr19	+	793	7	NNC	ENSMUSG00000087367.2	novel	751	2	NA	NA	-1774	-2746	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGTGAGCGCCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	45736172	45738003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_45736373_45736440_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495_45737582_45737877
ENSMUSG00000087367.2_45736173_45738003_4	chr19	+	849	6	NNC	ENSMUSG00000087367.2	novel	751	2	NA	NA	-1774	-2746	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7127	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGTGAGCGCCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	45736172	45738003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495_45737582_45737889
ENSMUSG00000087367.2_45736173_45738003_5	chr19	+	864	6	NNC	ENSMUSG00000087367.2	novel	751	2	NA	NA	-1774	-2746	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGTGAGCGCCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	45736172	45738003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_45736486_45736594_45736720_45736984_45737079_45737188_45737309_45737495_45737582_45737877
ENSMUSG00000087367.2_45736173_45738003_6	chr19	+	853	6	NNC	ENSMUSG00000087367.2	novel	751	2	NA	NA	-1774	-2746	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6725	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGTGAGCGCCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	45736172	45738003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495_45737574_45737877
ENSMUSG00000087367.2_45736281_45738003_1	chr19	+	745	6	NNC	ENSMUSG00000087367.2	novel	751	2	NA	NA	-1666	-2746	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	561	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGTGAGCGCCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	45736280	45738003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495_45737574_45737877
ENSMUSG00000087367.2_45736281_45738003_3	chr19	+	1049	5	NIC	ENSMUSG00000087367.2	novel	751	2	NA	NA	-1666	-2746	intron_retention	FALSE	non_canonical	0	0	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGTGAGCGCCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	45736280	45738003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495
ENSMUSG00000087367.2_45736281_45738003_4	chr19	+	741	6	NNC	ENSMUSG00000087367.2	novel	751	2	NA	NA	-1666	-2746	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	503	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGTGAGCGCCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	45736280	45738003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495_45737582_45737889
ENSMUSG00000087367.2_45738060_45740749_1	chr19	+	638	2	FSM	ENSMUSG00000087367.2	ENSMUST00000133963.2	751	2	113	0	113	0	multi-exon	FALSE	canonical	3	15	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTGTATCATATAGATT	NA	False	NA	NA	False	AATAAA	-20	NA	45738059	45740749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_45738117_45740168
ENSMUSG00000087367.2_45740269_45771990_1	chr19	+	3486	16	NIC	ENSMUSG00000087367.2	novel	751	2	NA	NA	2322	31241	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCTACAGACCGGCTCAGA	NA	False	NA	NA	False	NA	NA	NA	45740268	45771990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_45740720_45743045_45743206_45746343_45746537_45746787_45746874_45749542_45749648_45750623_45750710_45753888_45754064_45755832_45756447_45758489_45758649_45760120_45760406_45762100_45762200_45764486_45764659_45765325_45765457_45767025_45767124_45767470_45767523_45771370
ENSMUSG00000087377.2_132095277_132102841_2	chr2	+	509	2	FSM	ENSMUSG00000087377.2	ENSMUST00000124336.2	921	2	0	412	0	-412	multi-exon	FALSE	canonical	3	32	junction_1	0	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGGTTTCTAGAATGTCC	545	False	NA	NA	False	NA	NA	NA	132095276	132102841	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_132095450_132102505
ENSMUSG00000087387.3_27849396_27855643_1	chr17	+	646	6	Genic_Genomic	ENSMUSG00000087387.3	novel	388	2	NA	NA	-4921	-199	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGTGCTGAGAAACCAGG	1419	False	NA	NA	False	NA	NA	NA	27849395	27855643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_+_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853299_27853450_27855538
ENSMUSG00000087400.9_24471340_24474581_1	chr10	-	2403	5	NIC	ENSMUSG00000087400.9	novel	870	3	NA	NA	-1575	-193	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGGAGTCCTACACAAAC	NA	False	NA	NA	False	NA	NA	NA	24474581	24471339	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_24471687_24471773_24471997_24472244_24472497_24472629_24472842_24473212
ENSMUSG00000087403.10_151098212_151110466_1	chrX	-	344	3	NIC	ENSMUSG00000087403.10	novel	367	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	7.5	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAACAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-35	NA	151110466	151098211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_151098416_151110156_151110236_151110405
ENSMUSG00000087403.10_151098212_151110466_2	chrX	-	388	3	NIC	ENSMUSG00000087403.10	novel	367	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	40	108	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAACAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-35	NA	151110466	151098211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_-_151098416_151110156_151110236_151110361
ENSMUSG00000087435.2_30298748_30305530_1	chr2	+	649	4	Genic_Genomic	ENSMUSG00000087435.2	novel	556	2	NA	NA	-4980	180	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGGGCAGGACTCACGGG	NA	False	NA	NA	False	NA	NA	NA	30298747	30305530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_+_30298807_30299968_30300088_30302994_30303259_30305323
ENSMUSG00000087439.2_110422161_110434069_2	chr5	+	1045	5	NIC	ENSMUSG00000087439.2	novel	613	4	NA	NA	12126	8936	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCTCGCCGGAGGATTGG	NA	False	NA	NA	False	NA	NA	NA	110422160	110434069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_110422495_110425520_110425641_110429062_110429226_110431511_110431620_110433749
ENSMUSG00000087440.3_51163086_51184836_1	chr3	+	2415	7	Genic_Genomic	ENSMUSG00000087440.3	novel	1625	1	NA	NA	-21094	-968	multi-exon	FALSE	non_canonical	0	0	junction_1	0	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCCTCCGACAGGAAGCGG	NA	False	NA	NA	False	NA	NA	NA	51163085	51184836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_+_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172428_51174173_51174288_51184625
ENSMUSG00000087442.2_172863706_172876527_1	chr2	-	1743	4	Genic_Genomic	ENSMUSG00000092596.2_ENSMUSG00000087442.2	novel	553	2	NA	NA	-154	590	multi-exon	FALSE	non_canonical	0	0	junction_1	0	782	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCGCCTTTGTAGCCGGC	NA	False	NA	NA	False	NA	NA	NA	172876527	172863705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_-_172864041_172864584_172864709_172865119_172865175_172875298
ENSMUSG00000087442.2_172863706_172876527_2	chr2	-	1766	4	Genic_Genomic	ENSMUSG00000092596.2_ENSMUSG00000087442.2	novel	553	2	NA	NA	-154	590	multi-exon	FALSE	non_canonical	0	0	junction_1	0	804	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCGCCTTTGTAGCCGGC	NA	False	NA	NA	False	NA	NA	NA	172876527	172863705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr2_-_172864064_172864584_172864709_172865119_172865175_172875298
ENSMUSG00000087444.2_100286639_100320883_1	chr15	+	2112	17	NIC	ENSMUSG00000087444.2	novel	2608	2	NA	NA	-33389	-4473	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCAGGAGCCAGCGGCGA	5745	False	NA	NA	False	NA	NA	NA	100286638	100320883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
ENSMUSG00000087461.3_33909204_33916782_1	chr2	-	1672	3	NNC	ENSMUSG00000087461.3	novel	2668	4	NA	NA	80959	-903	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	1	89	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTGTTTACCCTCAAGA	NA	False	NA	NA	False	NA	NA	NA	33916782	33909203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_33910509_33915810_33915970_33916574
ENSMUSG00000087461.3_33910086_33916782_1	chr2	-	790	3	NNC	ENSMUSG00000087461.3	novel	2668	4	NA	NA	80959	-1785	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	1	52	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGACTCTGAGCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	33916782	33910085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_33910509_33915810_33915970_33916574
ENSMUSG00000087466.4_86464448_86577834_1	chr9	+	2092	14	NIC	ENSMUSG00000087466.4	novel	1825	3	NA	NA	-113065	-5472	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGCGGGCGGCGGCCGTGC	NA	False	NA	NA	False	GGGGCT	-43	NA	86464447	86577834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_86464961_86469015_86469115_86476496_86476671_86478108_86478252_86480771_86480878_86493905_86494020_86495593_86495692_86501777_86501888_86528363_86528468_86532920_86533083_86536695_86536772_86559916_86560067_86561871_86562006_86577725
ENSMUSG00000087478.2_8502628_8516330_1	chr17	-	757	4	NIC	ENSMUSG00000087478.2	novel	440	2	NA	NA	918	9570	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	139	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGACACTCGGAGAAGCCTT	8535	False	NA	NA	False	NA	NA	NA	8516330	8502627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_8502794_8515366_8515464_8515655_8515789_8515969
ENSMUSG00000087478.2_8502628_8516494_1	chr17	-	921	4	NIC	ENSMUSG00000087478.2	novel	1193	2	NA	NA	754	9570	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	6083	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGACACTCGGAGAAGCCTT	8371	False	NA	NA	False	NA	NA	NA	8516494	8502627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_8502794_8515366_8515464_8515655_8515789_8515969
ENSMUSG00000087480.2_120693534_120696799_1	chr10	+	539	3	FSM	ENSMUSG00000087480.2	ENSMUST00000127564.2	2971	3	0	2432	0	-2432	multi-exon	FALSE	canonical	1	1	junction_2	0.5	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGGAAACTGTTCCCTTT	NA	False	NA	NA	False	GATAAA	-19	NA	120693533	120696799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_120693667_120694852_120694965_120696505
ENSMUSG00000087523.2_70545347_70545929_1	chr11	-	235	3	Fusion	ENSMUSG00000018293.5_ENSMUSG00000087523.2	novel	357	2	NA	NA	-459	220	multi-exon	FALSE	canonical	2	4	junction_1	16.5	431	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAGCAACAGCCCGCAGA	NA	False	NA	NA	False	NA	NA	NA	70545929	70545346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr11_-_70545404_70545609_70545723_70545864
ENSMUSG00000087547.2_157437503_157439240_1	chr2	-	450	2	NNC	ENSMUSG00000087547.2	novel	629	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	462	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACATCTGGCCAAATATG	8707	False	NA	-13	True	NA	NA	NA	157439240	157437502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_157437906_157439193
ENSMUSG00000087549.2_31560746_31571020_1	chr2	-	1326	9	NIC	ENSMUSG00000087549.2	novel	794	4	NA	NA	7461	5630	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	176	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAATGACTTGCGCAGGCG	NA	False	NA	NA	False	NA	NA	NA	31571020	31560745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31565917_31566679_31566749_31568462_31568640_31569862_31569992_31570501
ENSMUSG00000087549.2_31560746_31571362_1	chr2	-	1668	9	NIC	ENSMUSG00000087549.2	novel	794	4	NA	NA	7119	5630	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	2400	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAATGACTTGCGCAGGCG	NA	False	NA	NA	False	NA	NA	NA	31571362	31560745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31565917_31566679_31566749_31568462_31568640_31569862_31569992_31570501
ENSMUSG00000087568.2_38118116_38139042_1	chr16	+	1542	8	NNC	ENSMUSG00000087568.2	novel	326	2	NA	NA	-4862	13660	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCCACACGTGGGAGGGA	8379	False	NA	NA	False	NA	NA	NA	38118115	38139042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_38118658_38122329_38122422_38122978_38123128_38125140_38125363_38127077_38127225_38128443_38128516_38131353_38131471_38138841
ENSMUSG00000087589.4_36601777_36722264_1	chr1	+	2282	15	Genic_Genomic	ENSMUSG00000087589.4	novel	910	3	NA	NA	4337	117570	multi-exon	FALSE	non_canonical	0	0	junction_1	0	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGCGCCCTCGGGTCGCGT	NA	False	NA	NA	False	NA	NA	NA	36601776	36722264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_36602102_36603410_36603564_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
ENSMUSG00000087596.2_107057489_107080178_1	chr11	+	3129	18	NIC	ENSMUSG00000087596.2	novel	695	3	NA	NA	9255	22202	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	432	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGCGACCCCTGGCGG	NA	False	NA	NA	False	NA	NA	NA	107057488	107080178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064288_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
ENSMUSG00000087596.2_107057753_107080178_1	chr11	+	2865	18	NIC	ENSMUSG00000087596.2	novel	695	3	NA	NA	9519	22202	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	314	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGCGACCCCTGGCGG	NA	False	NA	NA	False	NA	NA	NA	107057752	107080178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064288_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
ENSMUSG00000087598.10_23897084_23907552_1	chr7	-	2668	4	FSM	ENSMUSG00000087598.10	ENSMUST00000086006.12	6402	4	22	3712	0	423	multi-exon	TRUE	canonical	3	37	junction_1	10.4986771653491	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTAGTCTTTTTTATTGT	NA	False	NA	NA	False	TATAAA	-30	NA	23907552	23897083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_23899468_23902794_23902922_23906482_23906541_23907453
ENSMUSG00000087598.10_23902854_23907552_1	chr7	-	225	3	ISM	ENSMUSG00000087598.10	ENSMUST00000086006.12	6402	4	22	9482	0	891	5prime_fragment	FALSE	canonical	3	41	junction_2	10	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAGGAAGCTGTACCACG	NA	False	NA	NA	False	NA	NA	NA	23907552	23902853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_23902922_23906482_23906541_23907453
ENSMUSG00000087601.4_66833585_66844577_1	chr5	-	993	9	NNC	ENSMUSG00000087601.4	novel	1685	5	NA	NA	-10736	-20450	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1933	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGTGGAGCCGCCCAGGC	NA	False	NA	NA	False	AAAACA	-1	NA	66844577	66833584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_66833683_66834298_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184_66844322_66844347
ENSMUSG00000087601.4_66833585_66844577_2	chr5	-	992	9	NNC	ENSMUSG00000087601.4	novel	1685	5	NA	NA	-10736	-20450	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	579	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGTGGAGCCGCCCAGGC	NA	False	NA	NA	False	AAAACA	-1	NA	66844577	66833584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_66833666_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184_66844316_66844337
ENSMUSG00000087601.4_66833585_66844577_3	chr5	-	990	9	NNC	ENSMUSG00000087601.4	novel	1685	5	NA	NA	-10736	-20450	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	124.681030533919	4207	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGTGGAGCCGCCCAGGC	NA	False	NA	NA	False	AAAACA	-1	NA	66844577	66833584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_66833666_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184_66844324_66844347
ENSMUSG00000087601.4_66833585_66844577_5	chr5	-	981	9	NNC	ENSMUSG00000087601.4	novel	1685	5	NA	NA	-10736	-20450	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	726	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGTGGAGCCGCCCAGGC	NA	False	NA	NA	False	AAAACA	-1	NA	66844577	66833584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_66833666_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184_66844315_66844347
ENSMUSG00000087601.4_66833585_66844577_6	chr5	-	995	9	NNC	ENSMUSG00000087601.4	novel	1685	5	NA	NA	-10736	-20450	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	124.681030533919	3299	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGTGGAGCCGCCCAGGC	NA	False	NA	NA	False	AAAACA	-1	NA	66844577	66833584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_66833683_66834298_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184_66844324_66844347
ENSMUSG00000087610.2_96485188_96501475_1	chr3	+	1341	6	Genic_Genomic	ENSMUSG00000087610.2	novel	550	2	NA	NA	888	13496	multi-exon	FALSE	non_canonical	0	0	junction_1	0	183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCCGCCTCCCCGAGCTC	NA	False	NA	NA	False	NA	NA	NA	96485187	96501475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_+_96485905_96487113_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96501399
ENSMUSG00000087640.2_93141780_93166738_1	chrX	+	902	4	NIC	ENSMUSG00000087640.2	novel	1189	2	NA	NA	69320	23828	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCGGGCTCCGGCTGGTG	NA	False	NA	NA	False	NA	NA	NA	93141779	93166738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_93142459_93145896_93145987_93157801_93157870_93166673
ENSMUSG00000087651.4_83558790_83598157_1	chr10	+	664	6	FSM	ENSMUSG00000087651.4	ENSMUST00000150459.3	1194	6	61	469	0	130	multi-exon	FALSE	canonical	3	89	junction_4	8.16333265278342	958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTGCCTCTTGTCTTCA	NA	False	NA	8	True	CATAAA	-18	NA	83558789	83598157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_83558899_83573772_83573798_83593308_83593345_83593997_83594078_83595456_83595495_83597781
ENSMUSG00000087651.4_83558790_83598157_3	chr10	+	659	6	NNC	ENSMUSG00000087651.4	novel	1194	6	NA	NA	0	130	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	37.5904243125826	810	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTGCCTCTTGTCTTCA	NA	False	NA	8	True	CATAAA	-18	NA	83558789	83598157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_83558899_83573772_83573798_83593313_83593345_83593997_83594078_83595456_83595495_83597781
ENSMUSG00000087651.4_83558790_83598157_4	chr10	+	639	5	NIC	ENSMUSG00000087651.4	novel	1194	6	NA	NA	0	130	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	43.7171305096755	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTGCCTCTTGTCTTCA	NA	False	NA	8	True	CATAAA	-18	NA	83558789	83598157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_83558899_83593308_83593345_83593997_83594078_83595456_83595495_83597781
ENSMUSG00000087651.4_83558790_83598157_6	chr10	+	654	6	NNC	ENSMUSG00000087651.4	novel	1194	6	NA	NA	0	130	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	44.6076226669837	638	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTGCCTCTTGTCTTCA	NA	False	NA	8	True	CATAAA	-18	NA	83558789	83598157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_83558899_83573772_83573798_83593313_83593345_83593997_83594078_83595461_83595495_83597781
ENSMUSG00000087658.3_52132575_52135297_1	chr6	+	2246	2	NIC	ENSMUSG00000087658.3	novel	409	3	NA	NA	-1307	-211	intron_retention	FALSE	non_canonical	0	0	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGCGCAAGAGGCGGGG	NA	False	NA	NA	False	AAGAAA	-15	NA	52132574	52135297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_52134070_52134546
ENSMUSG00000087658.3_52135412_52139091_1	chr6	+	436	2	FSM	ENSMUSG00000087658.3	ENSMUST00000159006.2	253	2	-92	-91	0	-8	multi-exon	FALSE	canonical	3	38	junction_1	0	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCACTCCACTCGTCCTAG	NA	False	NA	51	True	NA	NA	NA	52135411	52139091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_52135667_52138910
ENSMUSG00000087658.3_52135412_52139387_1	chr6	+	732	2	FSM	ENSMUSG00000087658.3_ENSMUSG00002075580.1	ENSMUST00000159006.2	253	2	-92	-387	0	140	multi-exon	FALSE	canonical	3	38	junction_1	0	370	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAATTGTGACCAGACTTT	NA	False	NA	NA	False	AATAAA	-19	NA	52135411	52139387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_52135667_52138910
ENSMUSG00000087666.4_54032814_54035514_1	chr14	+	505	3	NNC	ENSMUSG00000087666.4	novel	426	2	NA	NA	0	2094	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	4	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCCTTAGTCTTTCACC	NA	False	NA	NA	False	NA	NA	NA	54032813	54035514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_54032964_54033144_54033246_54035260
ENSMUSG00000087675.2_119456739_119459872_1	chr11	+	561	3	NNC	ENSMUSG00000087675.2	novel	1705	4	NA	NA	17283	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	3	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTAGAACTAACCTCACTG	2134	False	NA	NA	False	ATTAAA	-17	NA	119456738	119459872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_119456892_119459088_119459263_119459638
ENSMUSG00000087687.4_3671551_3673372_2	chr8	+	330	4	FSM	ENSMUSG00000087687.4	ENSMUST00000156380.4	1193	4	0	863	0	0	multi-exon	FALSE	canonical	3	539	junction_1	68.3715340376876	3751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTAGTGCCAAGTGTT	5587	False	NA	10	True	NA	NA	NA	3671550	3673372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_3671612_3672341_3672429_3672592_3672626_3673223
ENSMUSG00000088651.3_81545916_81579651_1	chr12	+	3420	4	Genic_Genomic	ENSMUSG00000088651.3	novel	121	1	NA	NA	-2098	31517	multi-exon	FALSE	non_canonical	0	0	junction_1	0	833	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCCTCAGCGGTCAGAC	NA	False	NA	NA	False	NA	NA	NA	81545915	81579651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr12_+_81548941_81551317_81551414_81557602_81557740_81579489
ENSMUSG00000089635.2_137983412_137996459_1	chr3	-	1335	9	NIC	ENSMUSG00000089635.2	novel	1564	3	NA	NA	16324	3757	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCGGGCCAAAGTTGCAC	6255	False	NA	NA	False	NA	NA	NA	137996459	137983411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_137983498_137985491_137985594_137986134_137986274_137988196_137988285_137988375_137988596_137992452_137992714_137994509_137994646_137995562_137995702_137996295
ENSMUSG00000089669.8_69573874_69574783_1	chr11	-	401	2	ISM	ENSMUSG00000089669.8	ENSMUST00000018896.14	1407	6	1597	202	1597	-116	3prime_fragment	FALSE	canonical	3	33	junction_1	0	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCCCCAAATTCTTTTG	6419	False	NA	-3	True	ATTAAA	-30	NA	69574783	69573873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_-_69574171_69574679
ENSMUSG00000089715.13_79710301_79718445_1	chr15	-	3158	5	FSM	ENSMUSG00000089715.13	ENSMUST00000109627.8	5806	5	444	2204	-7	0	multi-exon	FALSE	canonical	3	119	junction_1	17.0367250374008	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	79718445	79710300	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_79713180_79717712_79717780_79717902_79717969_79718115_79718160_79718343
ENSMUSG00000089768.3_135875885_135877618_1	chrX	-	478	2	ISM	ENSMUSG00000089768.3	ENSMUST00000113071.2	439	3	5	1114	5	-1114	5prime_fragment	FALSE	canonical	3	131	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGCCAACCAAACAACAAC	NA	False	NA	NA	False	ATTAAA	-31	NA	135877618	135875884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chrX_-_135876252_135877507
ENSMUSG00000089781.3_90527771_90576151_1	chr6	-	3068	23	NIC	ENSMUSG00000089781.3	novel	670	2	NA	NA	779	45908	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCCTCCAGGCAGAGAAGA	NA	False	NA	NA	False	NA	NA	NA	90576151	90527770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_90527880_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
ENSMUSG00000089782.2_97876382_97877227_1	chr1	-	755	2	Genic_Genomic	ENSMUSG00000089782.2	novel	489	1	NA	NA	-113	244	multi-exon	FALSE	non_canonical	0	0	junction_1	0	700	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATGTA	8430	False	NA	NA	False	AATAAA	-44	NA	97877227	97876381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_-_97876841_97876931
ENSMUSG00000089798.11_107682623_107688504_1	chr5	+	755	3	NNC	ENSMUSG00000089798.11	novel	5249	3	NA	NA	0	-7739	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	1.5	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACGTGTGATGGACTCCAG	NA	False	NA	NA	False	AATAAA	-37	NA	107682622	107688504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_107682675_107686995_107687090_107687895
ENSMUSG00000089798.11_107696833_107745469_1	chr5	+	2003	19	Fusion	ENSMUSG00000033773.15_ENSMUSG00000089798.11	novel	2992	12	NA	NA	14210	-4194	multi-exon	FALSE	non_canonical	0	0	junction_1	0	676	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCACTCCTGGCCCCGCC	8664	False	NA	NA	False	NA	NA	NA	107696832	107745469	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr5_+_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723231_107726316_107726434_107741618_107741745_107744653_107744729_107745409
ENSMUSG00000089847.9_105284831_105289543_1	chr7	+	1774	8	NIC	ENSMUSG00000089847.9	novel	3273	3	NA	NA	-4432	-948	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATTTGGCGGAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	105284830	105289543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_105285601_105286017_105286193_105286327_105286486_105287025_105287248_105287415_105287535_105288215_105288313_105288531_105288673_105289451
ENSMUSG00000089847.9_105284831_105289543_2	chr7	+	1941	8	NIC	ENSMUSG00000089847.9	novel	3273	3	NA	NA	-4432	-948	intron_retention	FALSE	non_canonical	0	0	junction_1	0	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATTTGGCGGAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	105284830	105289543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_105285601_105286017_105286193_105286327_105286486_105286858_105287248_105287415_105287535_105288215_105288313_105288531_105288673_105289451
ENSMUSG00000089847.9_105289771_105290557_1	chr7	+	648	2	FSM	ENSMUSG00000089847.9	ENSMUST00000151193.2	1083	2	0	435	0	2	multi-exon	FALSE	canonical	3	351	junction_1	0	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGTCTATGGGTACC	NA	False	NA	9	True	AATAAA	-18	NA	105289770	105290557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_105289830_105289968
ENSMUSG00000089847.9_105289771_105290557_2	chr7	+	471	3	NNC	ENSMUSG00000089847.9	novel	3273	3	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	198	1644	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGTCTATGGGTACC	NA	False	NA	9	True	AATAAA	-18	NA	105289770	105290557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_105289830_105289975_105290065_105290234
ENSMUSG00000089847.9_105289771_105291053_1	chr7	+	581	4	FSM	ENSMUSG00000089847.9	ENSMUST00000058333.10	694	4	116	-3	0	3	multi-exon	FALSE	canonical	3	108	junction_3	126.499011853848	929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGCTTTCTTGTCTTCA	NA	False	NA	NA	False	AATAAA	-14	NA	105289770	105291053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_105289830_105289968_105290065_105290234_105290436_105290828
ENSMUSG00000089847.9_105289771_105291053_2	chr7	+	974	3	FSM	ENSMUSG00000089847.9	ENSMUST00000106783.8	3273	3	508	1791	0	3	multi-exon	FALSE	canonical	3	351	junction_1	22.5	2309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGCTTTCTTGTCTTCA	NA	False	NA	NA	False	AATAAA	-14	NA	105289770	105291053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_105289830_105289968_105290065_105290234
ENSMUSG00000089862.9_8259288_8428767_1	chr6	+	2174	4	FSM	ENSMUSG00000089862.9	ENSMUST00000159433.8	2025	4	-142	-7	0	0	multi-exon	FALSE	canonical	2	17	junction_2	5.43650214343336	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTTCATTGCATTAGTA	NA	False	NA	NA	False	AATAAA	-29	NA	8259287	8428767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_8259494_8270472_8270582_8373905_8373968_8426970
ENSMUSG00000089902.2_69691906_69702190_6	chr2	-	2061	12	NIC	ENSMUSG00000051730.16	novel	968	7	NA	NA	2204	9636	intron_retention	FALSE	non_canonical	0	0	junction_1	0	12847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCCCGGCTCTGCTTTCC	3330	False	NA	NA	False	GGGGCT	-45	NA	69702190	69691905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ENSMUSG00000089902.2_69691967_69702190_2	chr2	-	2000	12	NIC	ENSMUSG00000051730.16	novel	968	7	NA	NA	2204	9575	intron_retention	FALSE	non_canonical	0	0	junction_1	0	10725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAAAGATGGGGGCTTTC	3330	False	NA	NA	False	NA	NA	NA	69702190	69691966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ENSMUSG00000089911.5_116424950_116456259_1	chr3	-	2578	12	FSM	ENSMUSG00000089911.5	ENSMUST00000029570.9	2782	12	67	137	0	-137	multi-exon	FALSE	canonical	3	876	junction_3	57.2050104723397	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTTTTCATCTTGTGTG	NA	False	NA	-8	True	CATAAA	-16	NA	116456259	116424949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_116426130_116427370_116427535_116428551_116428650_116429926_116430040_116434035_116434108_116434895_116435010_116435358_116435578_116439014_116439130_116441430_116441559_116442167_116442231_116445052_116445149_116456043
ENSMUSG00000089911.5_116425652_116456259_1	chr3	-	1876	12	FSM	ENSMUSG00000089911.5	ENSMUST00000029570.9	2782	12	67	839	0	591	multi-exon	FALSE	canonical	3	876	junction_3	57.2050104723397	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGTCTCTGCCATTTCCT	NA	False	NA	-7	True	ATTAAA	-14	NA	116456259	116425651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_116426130_116427370_116427535_116428551_116428650_116429926_116430040_116434035_116434108_116434895_116435010_116435358_116435578_116439014_116439130_116441430_116441559_116442167_116442231_116445052_116445149_116456043
ENSMUSG00000089951.9_176115454_176124167_1	chr2	+	415	3	FSM	ENSMUSG00000089951.9	ENSMUST00000127687.8	1127	3	0	712	0	149	multi-exon	FALSE	canonical	3	22	junction_2	45	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGTAATTATTGTTTGCAA	NA	False	NA	NA	False	NA	NA	NA	176115453	176124167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_176115528_176123621_176123749_176123953
ENSMUSG00000089996.7_135856014_135858774_1	chrX	-	445	3	NNC	ENSMUSG00000089996.7	novel	450	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	110	1544	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTAACTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	135858774	135856013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_135856232_135857483_135857584_135858647
ENSMUSG00000089997.3_87689007_87699783_1	chr6	-	1230	7	ISM	ENSMUSG00000089997.3	ENSMUST00000238521.2	3678	16	0	36432	0	-36432	5prime_fragment	TRUE	canonical	3	8	junction_6	5.95585612840188	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTTGTCCATCGACCCA	NA	False	NA	NA	False	ATTAAA	-17	NA	87699783	87689006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr6_-_87689250_87690283_87690357_87691104_87691249_87694858_87695064_87695769_87695958_87698819_87699089_87699675
ENSMUSG00000090000.3_77017741_77028422_1	chr18	+	488	3	FSM	ENSMUSG00000090000.3	ENSMUST00000026487.6	1402	3	28	886	0	37	multi-exon	FALSE	canonical	3	1641	junction_2	78	12764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGATTTTTTTTTTTTTTT	NA	False	NA	21	True	AATAAA	-18	NA	77017740	77028422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_77017913_77027263_77027366_77028208
ENSMUSG00000090000.3_77017822_77028385_1	chr18	+	370	3	FSM	ENSMUSG00000090000.3	ENSMUST00000026487.6	1402	3	109	923	63	0	multi-exon	FALSE	canonical	3	1641	junction_2	78	2526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGTAAAGTTGACAATAAA	NA	False	NA	-16	True	NA	NA	NA	77017821	77028385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_77017913_77027263_77027366_77028208
ENSMUSG00000090009.2_28837060_28851046_1	chr7	-	2024	16	Genic_Genomic	ENSMUSG00000090009.2	novel	451	3	NA	NA	-11309	805	multi-exon	FALSE	non_canonical	0	0	junction_1	0	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTCCCGGGGGGTGGGGC	NA	False	NA	NA	False	NA	NA	NA	28851046	28837059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_28837151_28838235_28838342_28838467_28838531_28839666_28839799_28839912_28840067_28842390_28842565_28844556_28844674_28845232_28845509_28847791_28847873_28847968_28848074_28848198_28848318_28848411_28848557_28849223_28849261_28849346_28849482_28849603_28849717_28850870
ENSMUSG00000090015.9_110071539_110090136_1	chr5	+	478	4	FSM	ENSMUSG00000090015.9	ENSMUST00000112544.8	2417	4	273	1666	273	560	multi-exon	FALSE	canonical	3	75	junction_1	50.6315667894601	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTATGAATGTAATCAATG	NA	False	NA	NA	False	NA	NA	NA	110071538	110090136	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_110071633_110088291_110088419_110088605_110088667_110089940
ENSMUSG00000090015.9_110071539_110090970_2	chr5	+	1312	4	FSM	ENSMUSG00000090015.9	ENSMUST00000112544.8	2417	4	273	832	273	-832	multi-exon	FALSE	canonical	3	75	junction_1	50.6315667894601	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAACCTTACAAGTGTGA	NA	False	NA	NA	False	NA	NA	NA	110071538	110090970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_110071633_110088291_110088419_110088605_110088667_110089940
ENSMUSG00000090015.9_110071539_110091802_1	chr5	+	2061	5	NNC	ENSMUSG00000090015.9	novel	2417	4	NA	NA	273	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	73.5369804928106	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGCTATC	NA	False	NA	NA	False	NA	NA	NA	110071538	110091802	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_110071633_110088291_110088419_110088605_110088667_110089940_110090072_110090154
ENSMUSG00000090015.9_110071539_110091802_3	chr5	+	2144	4	FSM	ENSMUSG00000090015.9	ENSMUST00000112544.8	2417	4	273	0	273	0	multi-exon	FALSE	canonical	3	75	junction_1	50.6315667894601	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGCTATC	NA	False	NA	NA	False	NA	NA	NA	110071538	110091802	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_110071633_110088291_110088419_110088605_110088667_110089940
ENSMUSG00000090026.2_111679714_111700654_1	chr12	-	1041	5	NNC	ENSMUSG00000090026.2	novel	762	2	NA	NA	-2389	16814	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2761	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGGATCGCGACAGTGGA	NA	False	NA	NA	False	NA	NA	NA	111700654	111679713	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_111679853_111689045_111689244_111690773_111690833_111696455_111696547_111700100
ENSMUSG00000090075.2_19654654_19661688_1	chr7	+	391	2	NNC	ENSMUSG00000090075.2	novel	338	2	NA	NA	0	156	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	0	131	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTTGCCTTAATTTTTC	NA	False	NA	NA	False	AATAAA	-37	NA	19654653	19661688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_19654715_19661358
ENSMUSG00000090083.12_29833764_29860625_1	chr17	+	2064	8	FSM	ENSMUSG00000090083.12	ENSMUST00000024817.15	5404	8	0	3340	0	2	multi-exon	FALSE	canonical	3	261	junction_5	10.0387006232919	725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTCAGCTGGGCTTCGG	NA	False	NA	18	True	AATAAA	-17	NA	29833763	29860625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29834053_29840482_29840612_29845479_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
ENSMUSG00000090083.12_29833864_29860509_1	chr17	+	1848	8	FSM	ENSMUSG00000090083.12	ENSMUST00000024817.15	5404	8	100	3456	0	0	multi-exon	FALSE	canonical	3	261	junction_5	10.0387006232919	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGGGTGTGAGTCCTGT	NA	False	NA	61	True	NA	NA	NA	29833863	29860509	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29834053_29840482_29840612_29845479_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
ENSMUSG00000090083.12_29833864_29860625_1	chr17	+	1964	8	FSM	ENSMUSG00000090083.12	ENSMUST00000024817.15	5404	8	100	3340	0	2	multi-exon	FALSE	canonical	3	261	junction_5	10.0387006232919	733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTCAGCTGGGCTTCGG	NA	False	NA	18	True	AATAAA	-17	NA	29833863	29860625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29834053_29840482_29840612_29845479_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
ENSMUSG00000090088.2_45165498_45194220_1	chr10	-	1428	4	NIC	ENSMUSG00000090088.2	novel	525	2	NA	NA	-28700	-2091	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCCGATCAGAGCCGCTC	NA	False	NA	NA	False	NA	NA	NA	45194220	45165497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_45165672_45190656_45191376_45192526_45192636_45193794
ENSMUSG00000090088.2_45165498_45194548_1	chr10	-	1756	4	NIC	ENSMUSG00000090088.2	novel	525	2	NA	NA	-29028	-2091	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCCGATCAGAGCCGCTC	NA	False	NA	NA	False	NA	NA	NA	45194548	45165497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_45165672_45190656_45191376_45192526_45192636_45193794
ENSMUSG00000090093.9_174947535_175017653_1	chr2	-	447	3	Fusion	ENSMUSG00000078902.4_ENSMUSG00000090093.9_ENSMUSG00000081949.4	novel	401	4	NA	NA	11	-1288	multi-exon	FALSE	canonical	0	0	junction_1	5.5	554	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGTATGTAATTATACTT	NA	False	NA	NA	False	NA	NA	NA	175017653	174947534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_-_174947744_174974988_174975116_175017542
ENSMUSG00000090110.9_74448452_74460190_1	chrX	-	687	4	FSM	ENSMUSG00000090110.9	ENSMUST00000149863.3	507	4	0	-180	0	0	multi-exon	FALSE	canonical	3	61	junction_2	9.20144916122817	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGGTTTGTTACTAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	74460190	74448451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_74448825_74453151_74453220_74459620_74459820_74460143
ENSMUSG00000090110.9_74448452_74460190_2	chrX	-	777	3	NNC	ENSMUSG00000090110.9	novel	992	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	39.5	75	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGGTTTGTTACTAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	74460190	74448451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_74448825_74453151_74453220_74459854
ENSMUSG00000090117.8_42507261_42579809_1	chr19	-	3076	7	NIC	ENSMUSG00000090117.8	novel	435	2	NA	NA	-28262	18028	intron_retention	FALSE	non_canonical	0	0	junction_1	0	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGCGCCTGCTCTTCCGCT	NA	False	NA	NA	False	NA	NA	NA	42579809	42507260	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_42507297_42550990_42552781_42564464_42564641_42570358_42570430_42571263_42571360_42571841_42571983_42579043
ENSMUSG00000090118.2_125566094_125589753_1	chr8	+	1362	7	Genic_Genomic	ENSMUSG00000090118.2	novel	1119	2	NA	NA	7657	-689	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3895	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACTTCCGCTTCCGGCGC	NA	False	NA	NA	False	NA	NA	NA	125566093	125589753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_+_125566706_125567186_125567237_125568028_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
ENSMUSG00000090118.2_125566094_125589753_2	chr8	+	1367	7	Genic_Genomic	ENSMUSG00000090118.2	novel	1119	2	NA	NA	7657	-689	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5811	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACTTCCGCTTCCGGCGC	NA	False	NA	NA	False	NA	NA	NA	125566093	125589753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_+_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
ENSMUSG00000090137.9_70960916_70963029_1	chr8	-	504	4	NNC	ENSMUSG00000090137.9	novel	541	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	10633.6606532694	42289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGGTGTCTAGAGTGAC	NA	False	NA	-7	True	AATAAA	-25	NA	70963029	70960915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70961179_70961945_70962033_70962170_70962268_70962972
ENSMUSG00000090137.9_70960916_70963029_2	chr8	-	626	4	NNC	ENSMUSG00000090137.9	novel	705	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	638	junction_3	10332.9375085479	26365	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGGTGTCTAGAGTGAC	NA	False	NA	-7	True	AATAAA	-25	NA	70963029	70960915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70961179_70961945_70962033_70962170_70962285_70962867
ENSMUSG00000090137.9_70960916_70963029_3	chr8	-	515	4	NNC	ENSMUSG00000090137.9	novel	711	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	10633.6606532694	89072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGGTGTCTAGAGTGAC	NA	False	NA	-7	True	AATAAA	-25	NA	70963029	70960915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70961179_70961945_70962033_70962170_70962285_70962978
ENSMUSG00000090137.9_70960916_70963029_4	chr8	-	483	4	NNC	ENSMUSG00000090137.9	novel	711	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9384.64003926984	19246	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGGTGTCTAGAGTGAC	NA	False	NA	-7	True	AATAAA	-25	NA	70963029	70960915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70961179_70961968_70962033_70962170_70962285_70962987
ENSMUSG00000090137.9_70960916_70963029_5	chr8	-	489	4	NNC	ENSMUSG00000090137.9	novel	541	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	10633.6606532694	14493	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGGTGTCTAGAGTGAC	NA	False	NA	-7	True	AATAAA	-25	NA	70963029	70960915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70961179_70961945_70962033_70962170_70962268_70962987
ENSMUSG00000090137.9_70960916_70963029_6	chr8	-	484	4	NNC	ENSMUSG00000090137.9	novel	711	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9244.78794901334	11609	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGGTGTCTAGAGTGAC	NA	False	NA	-7	True	AATAAA	-25	NA	70963029	70960915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70961179_70961945_70962011_70962170_70962285_70962987
ENSMUSG00000090137.9_70960916_70963029_7	chr8	-	489	4	NNC	ENSMUSG00000090137.9	novel	711	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9244.78794901334	34108	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGGTGTCTAGAGTGAC	NA	False	NA	-7	True	AATAAA	-25	NA	70963029	70960915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_70961179_70961945_70962016_70962170_70962285_70962987
ENSMUSG00000090206.9_96039727_96047957_1	chr8	+	648	7	ISM	ENSMUSG00000090206.9	ENSMUST00000161029.9	968	8	1584	0	1497	0	3prime_fragment	FALSE	canonical	0	0	junction_1	1.5723301886761	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAGGCCCTAGGCTCGTGG	NA	False	NA	NA	False	AATAAA	-16	NA	96039726	96047957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_96039808_96046303_96046366_96046613_96046789_96047109_96047172_96047277_96047343_96047533_96047567_96047787
ENSMUSG00000090207.3_106765952_106769137_1	chr9	+	863	4	Genic_Genomic	ENSMUSG00000090207.3	novel	2289	1	NA	NA	-2794	-1895	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6577	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCGCACCCGGCGCGGTG	NA	False	NA	NA	False	NA	NA	NA	106765951	106769137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_106766420_106767359_106767502_106768269_106768398_106769012
ENSMUSG00000090207.3_106765952_106769137_2	chr9	+	868	4	Genic_Genomic	ENSMUSG00000090207.3	novel	2289	1	NA	NA	-2794	-1895	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7088	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCGCACCCGGCGCGGTG	NA	False	NA	NA	False	NA	NA	NA	106765951	106769137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_106766425_106767359_106767502_106768269_106768398_106769012
ENSMUSG00000090235.2_42743635_42768398_1	chr19	+	2742	20	Genic_Genomic	ENSMUSG00000090235.2	novel	2327	2	NA	NA	-23836	-302	multi-exon	FALSE	non_canonical	0	0	junction_1	0	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCCGGGTAGGACACGTG	NA	False	NA	NA	False	NA	NA	NA	42743634	42768398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr19_+_42744236_42744696_42744780_42746231_42746346_42748144_42748298_42748805_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755148_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768352
ENSMUSG00000090247.8_128755783_128759393_1	chr10	-	545	4	NNC	ENSMUSG00000090247.8	novel	550	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	12	junction_3	281.193093008266	5734	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGTGTGTTTGAAGGAG	NA	False	NA	-1	True	AATAAA	-19	NA	128759393	128755782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128755977_128756427_128756561_128758522_128758591_128759243
ENSMUSG00000090258.8_76812349_76830068_1	chr12	+	557	5	NNC	ENSMUSG00000090258.8	novel	676	4	NA	NA	0	114	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	214.20317457965	3828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAGCTAGAGTGAGATGT	NA	False	NA	8	True	GATAAA	-18	NA	76812348	76830068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586_76829733_76829928
ENSMUSG00000090258.8_76812349_76830068_2	chr12	+	556	5	NNC	ENSMUSG00000090258.8	novel	676	4	NA	NA	0	114	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	214.20317457965	4913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAGCTAGAGTGAGATGT	NA	False	NA	8	True	GATAAA	-18	NA	76812348	76830068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586_76829728_76829924
ENSMUSG00000090266.11_116734387_116740458_1	chr11	+	885	5	FSM	ENSMUSG00000090266.11	ENSMUST00000106370.10	1276	5	283	108	0	3	multi-exon	FALSE	canonical	3	104	junction_1	13.3603892158874	1324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAATGGGTATGAAGATGA	8951	False	NA	20	True	CATAAA	-20	NA	116734386	116740458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116734601_116739079_116739185_116739726_116739965_116740041_116740127_116740215
ENSMUSG00000090266.11_116734387_116740458_2	chr11	+	781	5	NNC	ENSMUSG00000090266.11	novel	1276	5	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	45.5706868502111	79	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAATGGGTATGAAGATGA	8951	False	NA	20	True	CATAAA	-20	NA	116734386	116740458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_116734601_116739079_116739185_116739830_116739965_116740041_116740127_116740215
ENSMUSG00000090266.11_116734387_116740566_1	chr11	+	1176	6	NIC	ENSMUSG00000090266.11	novel	1276	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_2	44.7812460746684	1618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTACTCCCAATCATTAAA	8951	False	NA	15	True	ATTAAA	-17	NA	116734386	116740566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_116734601_116736588_116736772_116739079_116739185_116739726_116739965_116740041_116740127_116740215
ENSMUSG00000090266.11_116734411_116736881_1	chr11	+	483	2	FSM	ENSMUSG00000090266.11	ENSMUST00000128784.2	585	2	24	78	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCCTCCACCCCTCAGT	8975	False	NA	-54	True	NA	NA	NA	116734410	116736881	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116734601_116736588
ENSMUSG00000090266.11_116734411_116740458_1	chr11	+	1044	6	NIC	ENSMUSG00000090266.11	novel	1276	5	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	38	junction_2	44.7812460746684	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAATGGGTATGAAGATGA	8975	False	NA	20	True	CATAAA	-20	NA	116734410	116740458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_116734601_116736588_116736772_116739079_116739185_116739726_116739965_116740041_116740127_116740215
ENSMUSG00000090266.11_116734411_116740458_2	chr11	+	988	6	NIC	ENSMUSG00000090266.11	novel	1276	5	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	49.6733328859661	981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAATGGGTATGAAGATGA	8975	False	NA	20	True	CATAAA	-20	NA	116734410	116740458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_116734601_116736644_116736772_116739079_116739185_116739726_116739965_116740041_116740127_116740215
ENSMUSG00000090374.2_63728232_63746217_1	chr14	+	1588	10	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-2916	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	24471	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63728231	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63728247_63729779_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
ENSMUSG00000090374.2_63729796_63746217_1	chr14	+	1563	9	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1352	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3236	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729795	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746152
ENSMUSG00000090374.2_63729796_63746217_2	chr14	+	1555	9	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1352	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3340	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729795	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737762_63746152
ENSMUSG00000090374.2_63729796_63746217_3	chr14	+	1549	9	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1352	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2366	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729795	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746166
ENSMUSG00000090374.2_63729796_63746217_4	chr14	+	1547	9	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1352	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4247	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729795	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735076_63737565_63737770_63746158
ENSMUSG00000090374.2_63729796_63746217_5	chr14	+	1549	9	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1352	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2509	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729795	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737762_63746158
ENSMUSG00000090374.2_63729796_63746217_6	chr14	+	1537	8	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1352	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1556	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729795	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63737546_63737770_63746158
ENSMUSG00000090374.2_63729796_63746217_7	chr14	+	1563	9	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1352	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7454	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729795	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733162_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
ENSMUSG00000090374.2_63729796_63746217_8	chr14	+	1542	8	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1352	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1788	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729795	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63737541_63737770_63746158
ENSMUSG00000090374.2_63729796_63746217_9	chr14	+	1539	9	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1352	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2327	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729795	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733324_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
ENSMUSG00000090374.2_63729907_63746217_10	chr14	+	1438	9	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1241	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1091	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729906	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737762_63746158
ENSMUSG00000090374.2_63729907_63746217_11	chr14	+	1452	9	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1241	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	882	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729906	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735040_63735090_63737569_63737770_63746158
ENSMUSG00000090374.2_63729907_63746217_12	chr14	+	1452	9	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1241	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1071	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729906	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746152
ENSMUSG00000090374.2_63729907_63746217_13	chr14	+	1428	9	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1241	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	850	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729906	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733324_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
ENSMUSG00000090374.2_63729907_63746217_2	chr14	+	1433	9	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1241	8896	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1271	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729906	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737582_63737770_63746158
ENSMUSG00000090374.2_63729907_63746217_5	chr14	+	1431	8	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1241	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	781	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729906	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63737541_63737770_63746158
ENSMUSG00000090374.2_63729907_63746217_6	chr14	+	1438	9	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1241	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1039	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729906	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746166
ENSMUSG00000090374.2_63729907_63746217_7	chr14	+	1444	9	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1241	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1571	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729906	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737762_63746152
ENSMUSG00000090374.2_63729907_63746217_8	chr14	+	1452	9	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1241	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2578	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729906	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733162_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
ENSMUSG00000090374.2_63729907_63746217_9	chr14	+	1436	9	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1241	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1899	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729906	63746217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735076_63737565_63737770_63746158
ENSMUSG00000090458.2_113980497_114046767_1	chr5	+	3439	11	NIC	ENSMUSG00000090458.2	novel	372	2	NA	NA	-165	65590	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGGGAGGGGCGCGGCCG	NA	False	NA	NA	False	NA	NA	NA	113980496	114046767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_113982530_113983221_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113987589_113987710_113988711_113988894_113990231_113990362_114003699_114003823_114020018_114020219_114046671
ENSMUSG00000090459.2_32014881_32027353_1	chr14	-	589	3	Fusion	ENSMUSG00000115691.2_ENSMUSG00000090459.2	novel	391	2	NA	NA	-10422	0	multi-exon	FALSE	canonical	3	32	junction_1	10	807	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGTCATTGACAAAGTTT	NA	False	NA	-13	True	ATTAAA	-17	NA	32027353	32014880	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr14_-_32015223_32016885_32016987_32027207
ENSMUSG00000090534.2_118474141_118475009_1	chr14	+	663	2	FSM	ENSMUSG00000090534.2	ENSMUST00000164755.2	2322	2	497	1162	-151	-1162	multi-exon	FALSE	canonical	3	20	junction_1	0	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTCTGTCTTGTTTTGCC	NA	False	NA	9	True	AATACA	-19	NA	118474140	118475009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_118474357_118474562
ENSMUSG00000090534.2_118474141_118475161_1	chr14	+	815	2	FSM	ENSMUSG00000090534.2	ENSMUST00000164755.2	2322	2	497	1010	-151	-1010	multi-exon	FALSE	canonical	3	20	junction_1	0	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTCTGACAGTTTTTATG	NA	False	NA	NA	False	AATAAA	-16	NA	118474140	118475161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_118474357_118474562
ENSMUSG00000090553.9_133531614_133538029_1	chr1	-	477	4	NNC	ENSMUSG00000090553.9	novel	503	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2134.95688220837	2263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACATTGTTTCATTCTG	NA	False	NA	-14	True	AATAAA	-25	NA	133538029	133531613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_133531815_133534238_133534318_133536634_133536716_133537913
ENSMUSG00000090553.9_133531614_133538029_2	chr1	-	492	4	NNC	ENSMUSG00000090553.9	novel	503	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2134.95688220837	50960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACATTGTTTCATTCTG	NA	False	NA	-14	True	AATAAA	-25	NA	133538029	133531613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_133531815_133534238_133534318_133536634_133536698_133537880
ENSMUSG00000090553.9_133531614_133538029_3	chr1	-	444	4	NNC	ENSMUSG00000090553.9	novel	503	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	2129.83447452822	2196	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACATTGTTTCATTCTG	NA	False	NA	-14	True	AATAAA	-25	NA	133538029	133531613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_133531815_133534238_133534318_133536634_133536698_133537928
ENSMUSG00000090553.9_133531614_133538029_4	chr1	-	485	4	NNC	ENSMUSG00000090553.9	novel	503	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2134.95688220837	32704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACATTGTTTCATTCTG	NA	False	NA	-14	True	AATAAA	-25	NA	133538029	133531613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_133531815_133534238_133534318_133536634_133536698_133537887
ENSMUSG00000090553.9_133531614_133538029_6	chr1	-	489	4	NNC	ENSMUSG00000090553.9	novel	503	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2134.95688220837	22376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACATTGTTTCATTCTG	NA	False	NA	-14	True	AATAAA	-25	NA	133538029	133531613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_133531815_133534238_133534318_133536634_133536716_133537901
ENSMUSG00000090564.10_21897126_21898975_2	chr14	+	1041	7	NIC	ENSMUSG00000090564.10	novel	2176	3	NA	NA	-520	-2133	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	3202	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGTAGCGAGGATGGG	NA	False	NA	NA	False	NA	NA	NA	21897125	21898975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_21897496_21897681_21897816_21897940_21897996_21898069_21898189_21898277_21898384_21898608_21898737_21898846
ENSMUSG00000090564.10_21897247_21898975_1	chr14	+	1180	5	NIC	ENSMUSG00000090564.10	novel	2176	3	NA	NA	-399	-2133	intron_retention	FALSE	non_canonical	0	0	junction_1	0	312	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGTAGCGAGGATGGG	NA	False	NA	NA	False	NA	NA	NA	21897246	21898975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_21897816_21897940_21898189_21898277_21898384_21898608_21898737_21898846
ENSMUSG00000090564.10_21897247_21898975_2	chr14	+	915	7	NNC	ENSMUSG00000090564.10	novel	2176	3	NA	NA	-399	-2133	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2287	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGTAGCGAGGATGGG	NA	False	NA	NA	False	NA	NA	NA	21897246	21898975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_21897496_21897681_21897811_21897940_21897996_21898069_21898189_21898277_21898384_21898608_21898737_21898846
ENSMUSG00000090564.10_21897247_21898975_3	chr14	+	1083	5	NIC	ENSMUSG00000090564.10	novel	2176	3	NA	NA	-399	-2133	intron_retention	FALSE	non_canonical	0	0	junction_1	0	302	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGTAGCGAGGATGGG	NA	False	NA	NA	False	NA	NA	NA	21897246	21898975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_21897496_21897681_21897816_21897940_21898384_21898608_21898737_21898846
ENSMUSG00000090564.10_21897247_21898975_4	chr14	+	994	6	NIC	ENSMUSG00000090564.10	novel	2176	3	NA	NA	-399	-2133	intron_retention	FALSE	non_canonical	0	0	junction_1	0	495	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGTAGCGAGGATGGG	NA	False	NA	NA	False	NA	NA	NA	21897246	21898975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_21897496_21897681_21897816_21897940_21898189_21898277_21898384_21898608_21898737_21898846
ENSMUSG00000090625.2_174169550_174188537_1	chr2	-	1587	12	NIC	ENSMUSG00000090625.2	novel	1484	13	NA	NA	-32	2562	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTCCCCGCCGCGGAGC	NA	False	NA	NA	False	NA	NA	NA	174188537	174169549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_174169735_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
ENSMUSG00000090626.10_72368385_72399243_1	chr9	-	962	10	NIC	ENSMUSG00000090626.10	novel	2054	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	69.9032841560571	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACCTGGTGAAATAAACAGA	7876	False	NA	-32	True	AATAAA	-14	NA	72399243	72368384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_72368561_72369137_72369273_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
ENSMUSG00000090626.10_72368385_72399243_2	chr9	-	1097	11	FSM	ENSMUSG00000090626.10	ENSMUST00000183574.8	1264	11	140	27	0	0	multi-exon	FALSE	canonical	2	9	junction_3	63.9844512362183	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACCTGGTGAAATAAACAGA	7876	False	NA	-32	True	AATAAA	-14	NA	72399243	72368384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_72368561_72369137_72369273_72380939_72381075_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
ENSMUSG00000090626.10_72385019_72399243_1	chr9	-	903	10	NIC	ENSMUSG00000090626.10	novel	2794	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	84.7573151364282	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAACATTTTGCCTCGCCT	7876	False	NA	NA	False	AATAAA	-43	NA	72399243	72385018	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_72385193_72385621_72385705_72387205_72387284_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
ENSMUSG00000090701.2_3121468_3122888_1	chr5	+	704	2	ISM	ENSMUSG00000090701.2	ENSMUST00000166202.2	434	3	725	-366	725	366	3prime_fragment	FALSE	canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTGACTCTTAAGACCAT	NA	False	NA	NA	False	AATAAA	-14	NA	3121467	3122888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_3121649_3122365
ENSMUSG00000090706.2_73380432_73420129_1	chr14	-	2142	15	NIC	ENSMUSG00000090706.2	novel	698	2	NA	NA	4632	30828	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	96	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGGGAAGGGGACAAAGA	NA	False	NA	NA	False	NA	NA	NA	73420129	73380431	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_73380629_73388972_73389056_73391754_73391849_73392270_73392335_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
ENSMUSG00000090706.2_73380602_73420129_1	chr14	-	1972	15	NIC	ENSMUSG00000090706.2	novel	698	2	NA	NA	4632	30658	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCAGCGGGGACTGCTCG	NA	False	NA	NA	False	NA	NA	NA	73420129	73380601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_73380629_73388972_73389056_73391754_73391849_73392270_73392335_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
ENSMUSG00000090733.7_90119978_90120955_1	chr3	-	319	4	NNC	ENSMUSG00000090733.7	novel	329	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8662.67496536466	5039	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120955	90119977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_90120038_90120240_90120352_90120499_90120609_90120916
ENSMUSG00000090733.7_90119978_90120955_2	chr3	-	337	4	NNC	ENSMUSG00000090733.7	novel	345	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	8818.28286383844	78731	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120955	90119977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_90120061_90120240_90120352_90120499_90120609_90120921
ENSMUSG00000090733.7_90119978_90120955_3	chr3	-	333	4	NNC	ENSMUSG00000090733.7	novel	345	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	8818.28286383844	66092	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120955	90119977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_90120061_90120240_90120352_90120499_90120609_90120925
ENSMUSG00000090733.7_90119978_90120955_4	chr3	-	336	4	NNC	ENSMUSG00000090733.7	novel	329	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8662.67496536466	49885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120955	90119977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_90120048_90120233_90120352_90120499_90120609_90120916
ENSMUSG00000090733.7_90119978_90120955_5	chr3	-	460	5	NIC	ENSMUSG00000090733.7	novel	458	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	9237.45215143223	7353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120955	90119977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_90120061_90120240_90120352_90120499_90120609_90120687_90120806_90120916
ENSMUSG00000090744.8_41193704_41210253_1	chr7	-	2824	4	FSM	ENSMUSG00000090744.8	ENSMUST00000073410.12	1430	4	0	-1394	0	1394	multi-exon	FALSE	canonical	3	131	junction_3	48.9285192909003	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTTTCTTTTTTTTTTAA	NA	False	NA	-1	True	NA	NA	NA	41210253	41193703	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_41196224_41197139_41197201_41197407_41197535_41210137
ENSMUSG00000090758.2_120563882_120600273_1	chr11	-	1748	16	NNC	ENSMUSG00000090758.2	novel	357	3	NA	NA	0	16090	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1427	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGCAGCCGGCTCGCCTC	NA	False	NA	NA	False	NA	NA	NA	120600273	120563881	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599818_120599896_120600073_120600169
ENSMUSG00000090758.2_120563882_120600273_2	chr11	-	2047	14	NIC	ENSMUSG00000090758.2	novel	357	3	NA	NA	0	16090	intron_retention	FALSE	non_canonical	0	0	junction_1	0	972	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGCAGCCGGCTCGCCTC	NA	False	NA	NA	False	NA	NA	NA	120600273	120563881	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120600073_120600169
ENSMUSG00000090758.2_120564185_120600273_1	chr11	-	2084	16	NIC	ENSMUSG00000090758.2	novel	357	3	NA	NA	0	15787	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	782	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTAGAGGATGGGGCGG	NA	False	NA	NA	False	NA	NA	NA	120600273	120564184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_-_120564628_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUSG00000090758.2_120596016_120600273_1	chr11	-	489	5	NNC	ENSMUSG00000090758.2	novel	357	3	NA	NA	0	-16044	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	190	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAGGAATCAGGCAGAGGC	NA	False	NA	NA	False	NA	NA	NA	120600273	120596015	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_120596144_120599483_120599536_120599755_120599826_120599937_120600073_120600169
ENSMUSG00000090758.2_120598904_120600273_1	chr11	-	687	5	NNC	ENSMUSG00000090758.2	novel	357	3	NA	NA	0	-18932	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	527	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGGAAGCCAGAGCCAG	NA	False	NA	NA	False	NA	NA	NA	120600273	120598903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_-_120599106_120599483_120599619_120599755_120599826_120599896_120600073_120600169
ENSMUSG00000090788.3_43173268_43251481_1	chr14	+	1689	6	NNC	ENSMUSG00000090788.3	novel	1387	5	NA	NA	-70403	0	at_least_one_novel_splicesite	TRUE	canonical	2	10	junction_3	9.19565114605812	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTAAGAAACTT	NA	False	NA	NA	False	AATAAA	-15	NA	43173267	43251481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_43173568_43243668_43243801_43244528_43244692_43245648_43245781_43246462_43246644_43250700
ENSMUSG00000090841.3_128326843_128329726_1	chr10	-	533	6	FSM	ENSMUSG00000090841.3	ENSMUST00000164181.2	665	6	18	114	0	0	multi-exon	FALSE	canonical	3	2189	junction_3	223.361948415571	1726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGTGATTTCTGTGTGG	8242	False	NA	NA	False	NA	NA	NA	128329726	128326842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
ENSMUSG00000090860.2_79690467_79700195_1	chr10	-	2833	14	Fusion	ENSMUSG00000035835.15_ENSMUSG00000091994.3	novel	3063	9	NA	NA	2920	-3081	intron_retention	FALSE	non_canonical	0	0	junction_1	0	957	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAAGATGGCGGAGACGC	NA	False	NA	NA	False	NA	NA	NA	79700195	79690466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr10_-_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ENSMUSG00000090861.2_26359229_26377996_1	chr14	-	1735	6	NNC	ENSMUSG00000090861.2	novel	566	2	NA	NA	-18658	-9667	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2453	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCTGAGCCCGCTACGCC	NA	False	NA	NA	False	NA	NA	NA	26377996	26359228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377063
ENSMUSG00000090862.4_115930747_115933385_1	chr7	-	528	6	NNC	ENSMUSG00000090862.4	novel	1150	5	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4779.80081593365	31952	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930819_115931613_115931715_115932163_115932321_115932926_115933010_115933134_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_10	chr7	-	662	5	NIC	ENSMUSG00000090862.4	novel	589	6	NA	NA	-15	0	intron_retention	FALSE	canonical	3	42	junction_1	4153.45948427332	3108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_11	chr7	-	503	6	NNC	ENSMUSG00000090862.4	novel	589	6	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5126.34304743645	2436	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930819_115931613_115931681_115932163_115932334_115932930_115933010_115933134_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_12	chr7	-	536	6	NNC	ENSMUSG00000090862.4	novel	1150	5	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4779.80081593365	72422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930819_115931613_115931715_115932163_115932321_115932918_115933010_115933134_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_13	chr7	-	534	6	NNC	ENSMUSG00000090862.4	novel	589	6	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4091.47274217976	298000	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930805_115931602_115931715_115932163_115932334_115932930_115933010_115933134_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_14	chr7	-	528	6	NNC	ENSMUSG00000090862.4	novel	589	6	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4670.5292034201	28419	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933143_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_15	chr7	-	511	6	NNC	ENSMUSG00000090862.4	novel	589	6	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4091.47274217976	8907	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930793_115931613_115931715_115932163_115932334_115932930_115933010_115933134_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_16	chr7	-	554	6	NNC	ENSMUSG00000090862.4	novel	1150	5	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	4778.35546605733	3019	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930819_115931613_115931715_115932163_115932351_115932930_115933010_115933134_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_17	chr7	-	582	6	NNC	ENSMUSG00000090862.4	novel	589	6	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5126.34304743645	1774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930819_115931613_115931760_115932163_115932334_115932930_115933010_115933134_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_18	chr7	-	514	6	NNC	ENSMUSG00000090862.4	novel	589	6	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4091.47274217976	10667	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930819_115931636_115931715_115932163_115932334_115932930_115933010_115933134_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_19	chr7	-	516	6	NNC	ENSMUSG00000090862.4	novel	589	6	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4779.80081593365	7691	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930819_115931613_115931715_115932163_115932334_115932951_115933010_115933134_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_2	chr7	-	523	6	NNC	ENSMUSG00000090862.4	novel	589	6	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4670.5292034201	11255	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933148_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_20	chr7	-	543	6	NNC	ENSMUSG00000090862.4	novel	589	6	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5126.34304743645	37754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930819_115931613_115931721_115932163_115932334_115932930_115933010_115933134_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_3	chr7	-	506	6	NNC	ENSMUSG00000090862.4	novel	589	6	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4091.47274217976	5655	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930819_115931644_115931715_115932163_115932334_115932930_115933010_115933134_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_4	chr7	-	527	6	NNC	ENSMUSG00000090862.4	novel	589	6	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4091.47274217976	182606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930805_115931609_115931715_115932163_115932334_115932930_115933010_115933134_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_5	chr7	-	1583	4	NIC	ENSMUSG00000090862.4	novel	1150	5	NA	NA	-15	0	intron_retention	FALSE	canonical	3	42	junction_1	4861.61722063759	664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_115930819_115931613_115933010_115933134_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_6	chr7	-	986	5	NIC	ENSMUSG00000090862.4	novel	589	6	NA	NA	-15	0	intron_retention	FALSE	canonical	3	42	junction_1	4548.69206475884	1526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_115930819_115931613_115932334_115932930_115933010_115933134_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_7	chr7	-	543	6	NNC	ENSMUSG00000090862.4	novel	1150	5	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4779.80081593365	28323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930819_115931613_115931715_115932163_115932334_115932924_115933010_115933134_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_8	chr7	-	499	6	NNC	ENSMUSG00000090862.4	novel	589	6	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5126.34304743645	2302	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930819_115931613_115931715_115932201_115932334_115932930_115933010_115933134_115933184_115933319
ENSMUSG00000090862.4_115930747_115933385_9	chr7	-	511	5	NNC	ENSMUSG00000090862.4	novel	653	5	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4854.68986522311	4016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933385	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933296
ENSMUSG00000090862.4_115930747_116021438_1	chr7	-	1063	7	NNC	ENSMUSG00000090862.4	novel	589	6	NA	NA	-88008	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	4747.56357397022	286705	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	9669	False	NA	-7	True	AATAAA	-13	NA	116021438	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933134_115933184_115933319_115933394_116020920
ENSMUSG00000090963.3_110196741_110205909_1	chr5	-	450	3	NNC	ENSMUSG00000090963.3	novel	1776	4	NA	NA	-11557	-2643	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_2	4.5	128	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCAGTGTAAAGTGCCTGA	NA	False	NA	NA	False	NA	NA	NA	110205909	110196740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_110196949_110197131_110197259_110205794
ENSMUSG00000091021.2_132079245_132080244_2	chr4	+	546	2	NNC	ENSMUSG00000091021.2	novel	1527	2	NA	NA	162	-449	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGACAGAGCCCGGGGAGA	3638	False	NA	NA	False	NA	NA	NA	132079244	132080244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_132079751_132080204
ENSMUSG00000091021.2_132079245_132080944_1	chr4	+	1281	2	NIC	ENSMUSG00000091021.2	novel	1527	2	NA	NA	162	251	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACCCGCGCCGACGCAG	3638	False	NA	NA	False	NA	NA	NA	132079244	132080944	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_+_132079555_132079973
ENSMUSG00000091050.2_98441092_98465604_1	chr15	+	2262	9	NIC	ENSMUSG00000091050.2	novel	2147	2	NA	NA	-24113	-1860	intron_retention	FALSE	non_canonical	0	0	junction_1	0	316	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCGACGTGACGAACTTC	3674	False	NA	NA	False	NA	NA	NA	98441091	98465604	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_98442490_98444404_98444476_98444625_98444790_98446546_98446593_98449794_98449858_98452481_98452543_98458077_98458207_98462927_98463010_98465356
ENSMUSG00000091154.3_27532626_27539508_1	chr8	-	643	5	Genic_Genomic	ENSMUSG00000091154.3	novel	666	1	NA	NA	-6438	-216	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGACCCGCGACTCACCGA	NA	False	NA	NA	False	NA	NA	NA	27539508	27532625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201
ENSMUSG00000091154.3_27532626_27540269_1	chr8	-	1404	5	Genic_Genomic	ENSMUSG00000091154.3	novel	666	1	NA	NA	-7199	-216	multi-exon	FALSE	non_canonical	0	0	junction_1	0	60	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGACCCGCGACTCACCGA	NA	False	NA	NA	False	NA	NA	NA	27540269	27532625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201
ENSMUSG00000091154.3_27532626_27544596_1	chr8	-	1996	8	Genic_Genomic	ENSMUSG00000091154.3	novel	666	1	NA	NA	-11526	-216	multi-exon	FALSE	non_canonical	0	0	junction_1	0	371	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGACCCGCGACTCACCGA	NA	False	NA	NA	False	NA	NA	NA	27544596	27532625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313
ENSMUSG00000091154.3_27532626_27546160_1	chr8	-	2534	9	Genic_Genomic	ENSMUSG00000091154.3	novel	666	1	NA	NA	-13090	-216	multi-exon	FALSE	non_canonical	0	0	junction_1	0	129	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGACCCGCGACTCACCGA	NA	False	NA	NA	False	NA	NA	NA	27546160	27532625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313_27544060_27545085
ENSMUSG00000091183.6_62915053_62933607_1	chr13	-	583	5	NNC	ENSMUSG00000091183.6	novel	358	2	NA	NA	-9	4961	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	11.6081867662439	74	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCCTGAGAGACTAGGCC	NA	False	NA	NA	False	NA	NA	NA	62933607	62915052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_62915265_62915471_62915542_62924530_62924592_62924776_62924904_62933494
ENSMUSG00000091183.6_62922745_62933607_1	chr13	-	533	4	FSM	ENSMUSG00000091183.6	ENSMUST00000201047.4	3279	4	15	2731	-9	-1323	multi-exon	FALSE	canonical	3	25	junction_3	2.05480466765633	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCATGTCCCAGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	62933607	62922744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_62922977_62924530_62924592_62924776_62924904_62933494
ENSMUSG00000091238.2_38376100_38411746_1	chr16	-	1824	9	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-18084	13585	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1046	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCACATGACTCATTATCA	NA	False	NA	NA	False	NA	NA	NA	38411746	38376099	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_-_38376146_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408670_38411273
ENSMUSG00000091238.2_38376139_38411746_1	chr16	-	1941	10	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-18084	13546	multi-exon	FALSE	non_canonical	0	0	junction_1	0	460	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGTTCTTCTCCAGCCCCT	NA	False	NA	NA	False	NA	NA	NA	38411746	38376138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_-_38376219_38377506_38377590_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408670_38411273
ENSMUSG00000091238.2_38379060_38411556_1	chr16	-	1449	9	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-17894	10625	multi-exon	FALSE	non_canonical	0	0	junction_1	0	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTCAAATCCTGGGTCTA	NA	False	NA	NA	False	NA	NA	NA	38411556	38379059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_-_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408670_38411273
ENSMUSG00000091238.2_38379060_38411746_1	chr16	-	1893	10	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-18084	10625	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2475	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTCAAATCCTGGGTCTA	NA	False	NA	NA	False	NA	NA	NA	38411746	38379059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_-_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38399005_38399056_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408670_38411273
ENSMUSG00000091238.2_38379060_38411746_2	chr16	-	1639	9	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-18084	10625	multi-exon	FALSE	non_canonical	0	0	junction_1	0	787	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTCAAATCCTGGGTCTA	NA	False	NA	NA	False	NA	NA	NA	38411746	38379059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_-_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408670_38411273
ENSMUSG00000091238.2_38383223_38411556_1	chr16	-	1854	9	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-17894	6462	multi-exon	FALSE	non_canonical	0	0	junction_1	0	275	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGGAGCTGAGGAGACGTG	NA	False	NA	NA	False	NA	NA	NA	38411556	38383222	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_-_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
ENSMUSG00000091238.2_38383223_38411746_1	chr16	-	1964	8	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-18084	6462	multi-exon	FALSE	non_canonical	0	0	junction_1	0	704	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGGAGCTGAGGAGACGTG	NA	False	NA	NA	False	NA	NA	NA	38411746	38383222	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_-_38383493_38384476_38384664_38393415_38393639_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408670_38411273
ENSMUSG00000091238.2_38383223_38411746_2	chr16	-	2044	9	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-18084	6462	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3900	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGGAGCTGAGGAGACGTG	NA	False	NA	NA	False	NA	NA	NA	38411746	38383222	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_-_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
ENSMUSG00000091264.4_41403640_41426413_1	chr13	+	523	2	FSM	ENSMUSG00000091264.4	ENSMUST00000165561.4	4483	2	320	3640	320	-3640	multi-exon	FALSE	canonical	3	181	junction_1	0	626	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGCCATTGCAGATTTCA	NA	False	NA	7	True	AATAAA	-17	NA	41403639	41426413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_41403791_41426041
ENSMUSG00000091306.3_54879618_54883192_1	chr14	+	1807	7	Genic_Genomic	ENSMUSG00000091306.3	novel	234	4	NA	NA	1209	-2558	multi-exon	FALSE	non_canonical	0	0	junction_1	0	815	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTACTACCTATAAGACATA	NA	False	NA	NA	False	NA	NA	NA	54879617	54883192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr14_+_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061
ENSMUSG00000091423.3_117357252_117410637_1	chr13	-	2165	9	Genic_Genomic	ENSMUSG00000091423.3	novel	2375	1	NA	NA	-53026	-2013	multi-exon	FALSE	non_canonical	0	0	junction_1	0	983	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCGAGTGGGAGGGGCCC	NA	False	NA	NA	False	NA	NA	NA	117410637	117357251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_-_117357494_117369262_117369353_117385807_117386001_117386236_117386323_117400930_117401059_117403855_117404136_117405465_117405500_117408580_117408636_117409580
ENSMUSG00000091423.3_117357280_117409795_1	chr13	-	1295	9	Genic_Genomic	ENSMUSG00000091423.3	novel	2375	1	NA	NA	-52184	-2041	multi-exon	FALSE	non_canonical	0	0	junction_1	0	516	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCCTGGGGACAGGACAC	NA	False	NA	NA	False	NA	NA	NA	117409795	117357279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_-_117357494_117369262_117369353_117385807_117386001_117386236_117386323_117400930_117401059_117403855_117404136_117405465_117405500_117408580_117408636_117409580
ENSMUSG00000091423.3_117357280_117410637_1	chr13	-	2137	9	Genic_Genomic	ENSMUSG00000091423.3	novel	2375	1	NA	NA	-53026	-2041	multi-exon	FALSE	non_canonical	0	0	junction_1	0	970	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCCTGGGGACAGGACAC	NA	False	NA	NA	False	NA	NA	NA	117410637	117357279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_-_117357494_117369262_117369353_117385807_117386001_117386236_117386323_117400930_117401059_117403855_117404136_117405465_117405500_117408580_117408636_117409580
ENSMUSG00000091443.2_13127189_13154833_1	chr8	+	2229	14	Genic_Genomic	ENSMUSG00000091443.2	novel	448	3	NA	NA	1112	22093	multi-exon	FALSE	non_canonical	0	0	junction_1	0	508	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCACTTCCGGCGCAGGT	NA	False	NA	NA	False	NA	NA	NA	13127188	13154833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_+_13128290_13128547_13128672_13129637_13129764_13129894_13129969_13131263_13131365_13135322_13135465_13136250_13136327_13140656_13140761_13144142_13144198_13145830_13145873_13147607_13147669_13148562_13148637_13150324_13150415_13154774
ENSMUSG00000091443.2_13127518_13154833_1	chr8	+	1900	14	Genic_Genomic	ENSMUSG00000091443.2	novel	448	3	NA	NA	1441	22093	multi-exon	FALSE	non_canonical	0	0	junction_1	0	114	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCACTTCCGGCGCAGGT	NA	False	NA	NA	False	NA	NA	NA	13127517	13154833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_+_13128290_13128547_13128672_13129637_13129764_13129894_13129969_13131263_13131365_13135322_13135465_13136250_13136327_13140656_13140761_13144142_13144198_13145830_13145873_13147607_13147669_13148562_13148637_13150324_13150415_13154774
ENSMUSG00000091479.2_66801167_66841488_1	chr15	+	2888	16	Fusion	ENSMUSG00000091479.2_ENSMUSG00000091412.2	novel	419	2	NA	NA	-289	38532	intron_retention	TRUE	non_canonical	0	0	junction_1	0	181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCCGTGCGTGCGTAGGG	2419	False	NA	NA	False	NA	NA	NA	66801166	66841488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr15_+_66802958_66805712_66805765_66808101_66808138_66809046_66809095_66809715_66809768_66810491_66810549_66811991_66812096_66813860_66813918_66814913_66815001_66815852_66815914_66816624_66816688_66818280_66818402_66820227_66820334_66831210_66831247_66832320_66832402_66841352
ENSMUSG00000091490.4_43633578_43646921_1	chr8	+	1532	7	NNC	ENSMUSG00000091490.4	novel	1552	9	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	181.358760472165	3116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCTCTCTGCATGTGTT	NA	False	NA	24	True	AATAAA	-15	NA	43633577	43646921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640765_43643305_43643407_43646239
ENSMUSG00000091490.4_43633578_43646921_2	chr8	+	1524	7	NNC	ENSMUSG00000091490.4	novel	1552	9	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	181.358760472165	2398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCTCTCTGCATGTGTT	NA	False	NA	24	True	AATAAA	-15	NA	43633577	43646921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643297_43643407_43646239
ENSMUSG00000091490.4_43633578_43646921_3	chr8	+	1516	7	NIC	ENSMUSG00000091490.4	novel	1552	9	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	2	6	junction_5	179.198214276817	981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCTCTCTGCATGTGTT	NA	False	NA	24	True	AATAAA	-15	NA	43633577	43646921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643305_43643407_43646239
ENSMUSG00000091512.6_137624267_137634526_1	chr3	+	697	7	NNC	ENSMUSG00000091512.6	novel	1295	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_6	103.238666313655	165	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTCTGTATAGGCCT	60	False	NA	2	True	AATAAA	-22	NA	137624266	137634526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_137624425_137624633_137624680_137625681_137625717_137630872_137630932_137632569_137632704_137633107_137633172_137634325
ENSMUSG00000091512.6_137624287_137634526_1	chr3	+	1281	7	NNC	ENSMUSG00000091512.6	novel	1295	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	113.98745057632	2188	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTCTGTATAGGCCT	80	False	NA	2	True	AATAAA	-22	NA	137624286	137634526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_137624411_137624633_137624680_137625681_137625717_137630872_137630932_137632569_137632704_137633107_137633172_137633707
ENSMUSG00000091514.3_26257222_26275226_1	chr8	+	2131	5	NIC	ENSMUSG00000091514.3	novel	2322	2	NA	NA	12714	15494	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	281	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCCCACGACCGTCCCAT	NA	False	NA	NA	False	NA	NA	NA	26257221	26275226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_26258438_26259309_26259565_26261106_26261362_26267450_26267556_26274926
ENSMUSG00000091514.3_26257326_26275226_1	chr8	+	2027	5	NIC	ENSMUSG00000091514.3	novel	2322	2	NA	NA	12818	15494	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	233	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCCCACGACCGTCCCAT	NA	False	NA	NA	False	NA	NA	NA	26257325	26275226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_26258438_26259309_26259565_26261106_26261362_26267450_26267556_26274926
ENSMUSG00000091537.3_108906955_108911446_1	chr9	-	735	4	FSM	ENSMUSG00000091537.3	ENSMUST00000167504.3	944	4	209	0	0	0	multi-exon	FALSE	canonical	3	4656	junction_3	487.196743284134	42847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGGGGTTGCCATGCTTG	NA	False	NA	NA	False	AATAAA	-21	NA	108911446	108906954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_108907494_108911069_108911158_108911238_108911295_108911394
ENSMUSG00000091537.3_108907056_108911446_1	chr9	-	634	4	FSM	ENSMUSG00000091537.3	ENSMUST00000167504.3	944	4	209	101	0	-101	multi-exon	FALSE	canonical	3	4656	junction_3	487.196743284134	42830	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCATTTGTGTGTGCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	108911446	108907055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_108907494_108911069_108911158_108911238_108911295_108911394
ENSMUSG00000091537.3_108907254_108911446_1	chr9	-	430	4	NNC	ENSMUSG00000091537.3	novel	944	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	2344.67003127424	6036	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAACTTTTGTAAAAAAA	NA	False	NA	NA	False	AATGAA	-30	NA	108911446	108907253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_108907488_108911069_108911158_108911238_108911295_108911394
ENSMUSG00000091537.3_108907254_108911446_2	chr9	-	436	4	FSM	ENSMUSG00000091537.3	ENSMUST00000167504.3	944	4	209	299	0	0	multi-exon	FALSE	canonical	3	4656	junction_3	487.196743284134	9020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAACTTTTGTAAAAAAA	NA	False	NA	NA	False	AATGAA	-30	NA	108911446	108907253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_108907494_108911069_108911158_108911238_108911295_108911394
ENSMUSG00000091623.3_100108862_100125950_1	chr5	+	1302	9	NNC	ENSMUSG00000091623.3	novel	2011	2	NA	NA	-16683	-1572	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGGAAAAAATCCTGGCGG	NA	False	NA	NA	False	NA	NA	NA	100108861	100125950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_100109193_100110373_100110472_100111589_100111737_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100124392_100124450_100125844
ENSMUSG00000091709.2_74668723_74671664_1	chr15	+	614	4	Genic_Genomic	ENSMUSG00000091709.2	novel	1630	3	NA	NA	12809	-825	multi-exon	FALSE	non_canonical	0	0	junction_1	0	824	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGCGAAGTCGGAGACT	NA	False	NA	NA	False	NA	NA	NA	74668722	74671664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_+_74669121_74670383_74670483_74671273_74671345_74671618
ENSMUSG00000091780.4_89255843_89258315_1	chr15	-	1328	4	ISM	ENSMUSG00000022615.8	ENSMUST00000023285.5	2037	11	2927	-291	2927	291	3prime_fragment	FALSE	canonical	3	35	junction_3	10.6770782520313	487	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCTGTGCATGTGCTCTG	NA	False	NA	-10	True	ATTAAA	-11	NA	89258315	89255842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_89256669_89257625_89257806_89257885_89258027_89258134
ENSMUSG00000091803.8_81518869_81531888_1	chr12	-	610	4	FSM	ENSMUSG00000091803.8	ENSMUST00000002757.11	2007	4	6	1391	0	0	multi-exon	FALSE	canonical	3	142	junction_1	95.530099968544	1803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTGTATGCTTTTCAGT	994	False	NA	-8	True	ATTAAA	-12	NA	81531888	81518868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_81519126_81521360_81521424_81527704_81527777_81531670
ENSMUSG00000091896.9_35904641_35938669_1	chr18	+	898	7	FSM	ENSMUSG00000091896.9	ENSMUST00000170693.9	2480	7	30	1552	0	0	multi-exon	FALSE	canonical	3	837	junction_2	121.947734706308	784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAAGTCCTTTTGATTT	NA	False	NA	-9	True	AATAAA	-20	NA	35904640	35938669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35905066_35926517_35926582_35932893_35932926_35933004_35933083_35933162_35933269_35934326_35934421_35938570
ENSMUSG00000091896.9_35904641_35939490_1	chr18	+	1719	7	FSM	ENSMUSG00000091896.9	ENSMUST00000170693.9	2480	7	30	731	0	617	multi-exon	FALSE	canonical	3	837	junction_2	121.947734706308	1182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTGAATAGGCTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	35904640	35939490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35905066_35926517_35926582_35932893_35932926_35933004_35933083_35933162_35933269_35934326_35934421_35938570
ENSMUSG00000091896.9_35904815_35938669_1	chr18	+	724	7	FSM	ENSMUSG00000091896.9	ENSMUST00000170693.9	2480	7	204	1552	0	0	multi-exon	FALSE	canonical	3	837	junction_2	121.947734706308	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAAGTCCTTTTGATTT	NA	False	NA	-9	True	AATAAA	-20	NA	35904814	35938669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35905066_35926517_35926582_35932893_35932926_35933004_35933083_35933162_35933269_35934326_35934421_35938570
ENSMUSG00000091931.6_102719534_102723900_1	chr12	-	993	2	FSM	ENSMUSG00000091931.6	ENSMUST00000173969.2	1152	2	159	0	159	0	multi-exon	FALSE	canonical	3	237	junction_1	0	743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTCTGTAGCCTCTT	6521	False	NA	-1	True	AATAAA	-20	NA	102723900	102719533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_102720426_102723799
ENSMUSG00000091931.6_102719534_102723900_2	chr12	-	791	3	NNC	ENSMUSG00000091931.6	novel	1152	2	NA	NA	159	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	118.5	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTCTGTAGCCTCTT	6521	False	NA	-1	True	AATAAA	-20	NA	102723900	102719533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_102719714_102719915_102720426_102723799
ENSMUSG00000091931.6_102719534_102724062_1	chr12	-	953	3	NNC	ENSMUSG00000091931.6	novel	1152	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	118.5	1962	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTCTGTAGCCTCTT	6359	False	NA	-1	True	AATAAA	-20	NA	102724062	102719533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_102719714_102719915_102720426_102723799
ENSMUSG00000091931.6_102719719_102724062_1	chr12	-	970	2	FSM	ENSMUSG00000091931.6	ENSMUST00000173969.2	1152	2	-3	185	0	-185	multi-exon	FALSE	canonical	3	237	junction_1	0	1194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCGTTGAATCAAATGGT	6359	False	NA	NA	False	NA	NA	NA	102724062	102719718	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_102720426_102723799
ENSMUSG00000091985.2_108485252_108491320_1	chr4	-	1560	11	NIC	ENSMUSG00000091985.2	novel	3039	2	NA	NA	3318	5788	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGCAGTGTCACCTGCTC	NA	False	NA	NA	False	NA	NA	NA	108491320	108485251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr4_-_108485400_108485779_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487534_108487740_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
ENSMUSG00000092074.3_6360819_6367709_1	chr17	-	698	5	NNC	ENSMUSG00000092074.3	novel	3321	5	NA	NA	-16	-2550	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	3259.88458384649	3934	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6367709	6360818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_6361219_6361567_6361646_6361983_6362101_6365191_6365234_6367648
ENSMUSG00000092074.3_6360819_6367709_2	chr17	-	705	5	FSM	ENSMUSG00000092074.3	ENSMUST00000169415.3	3321	5	66	2550	-16	-2550	multi-exon	FALSE	canonical	3	2579	junction_4	2048.76394138027	15281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6367709	6360818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6367648
ENSMUSG00000092074.3_6364449_6367709_1	chr17	-	846	2	ISM	ENSMUSG00000092074.3	ENSMUST00000169415.3	3321	5	66	6180	-16	-6180	5prime_fragment	FALSE	canonical	3	2579	junction_1	0	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAGGAAATGTCTTACA	NA	False	NA	NA	False	NA	NA	NA	6367709	6364448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_6365234_6367648
ENSMUSG00000092203.8_35169218_35171444_3	chr17	-	601	5	NNC	ENSMUSG00000092203.8	novel	579	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	64.9706664580255	13682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAATAGACTTTTTCTG	6010	False	NA	NA	False	AATAAA	-15	NA	35171444	35169217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_35169452_35169673_35169824_35170860_35170902_35171090_35171150_35171327
ENSMUSG00000092203.8_35169218_35171444_4	chr17	-	557	4	NNC	ENSMUSG00000092203.8	novel	579	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	77.8888096369862	7446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAATAGACTTTTTCTG	6010	False	NA	NA	False	AATAAA	-15	NA	35171444	35169217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_35169452_35169673_35169824_35170860_35170902_35171312
ENSMUSG00000092212.4_119049554_119052816_1	chr9	-	1311	7	NNC	ENSMUSG00000092212.4	novel	1458	6	NA	NA	7942	0	at_least_one_novel_splicesite	TRUE	canonical	3	7	junction_2	1.89296944860009	58	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGTTGTACTGTCTACT	NA	False	NA	NA	False	NA	NA	NA	119052816	119049553	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_119049990_119050186_119050403_119051512_119051622_119051804_119052020_119052238_119052334_119052418_119052540_119052697
ENSMUSG00000092225.2_42469800_42516658_2	chr7	-	526	4	FSM	ENSMUSG00000092225.2	ENSMUST00000174558.2	4073	4	0	3547	0	-3547	multi-exon	FALSE	canonical	3	126	junction_3	34.9888871246603	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACAGCTCAAGTATCTTC	NA	False	NA	NA	False	NA	NA	NA	42516658	42469799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_42470028_42471782_42471844_42472041_42472168_42516547
ENSMUSG00000092335.2_42226961_42241971_1	chr7	-	3671	4	FSM	ENSMUSG00000108446.2_ENSMUSG00000092335.2	ENSMUST00000173283.2	1425	4	0	-2246	0	2246	multi-exon	FALSE	canonical	3	207	junction_3	19.6129209111409	796	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATTAATTTGTTTTTC	NA	False	NA	-8	True	AGTAAA	-18	NA	42241971	42226960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_42230333_42232070_42232132_42232329_42232457_42241860
ENSMUSG00000092335.2_42229508_42241971_1	chr7	-	1124	4	FSM	ENSMUSG00000092335.2	ENSMUST00000173283.2	1425	4	0	301	0	-301	multi-exon	FALSE	canonical	3	207	junction_3	19.6129209111409	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGTCTCCGAATACACA	NA	False	NA	NA	False	NA	NA	NA	42241971	42229507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_42230333_42232070_42232132_42232329_42232457_42241860
ENSMUSG00000092335.2_42230128_42241971_1	chr7	-	504	4	FSM	ENSMUSG00000092335.2	ENSMUST00000173283.2	1425	4	0	921	0	-921	multi-exon	FALSE	canonical	3	207	junction_3	19.6129209111409	666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAATGAATGTGATAAATC	NA	False	NA	5	True	NA	NA	NA	42241971	42230127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_42230333_42232070_42232132_42232329_42232457_42241860
ENSMUSG00000092349.2_34112191_34125649_1	chr17	+	860	3	NNC	ENSMUSG00000092349.2	novel	807	3	NA	NA	-11918	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	59	1378	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGTGTTCTGACTTAAAT	NA	False	NA	13	True	NA	NA	NA	34112190	34125649	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_34112309_34124501_34124892_34125297
ENSMUSG00000092349.2_34112191_34125649_2	chr17	+	814	3	NNC	ENSMUSG00000092349.2	novel	807	3	NA	NA	-11918	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	59.5	767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGTGTTCTGACTTAAAT	NA	False	NA	13	True	NA	NA	NA	34112190	34125649	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_34112309_34124552_34124892_34125292
ENSMUSG00000092349.2_34112191_34125649_3	chr17	+	865	3	NNC	ENSMUSG00000092349.2	novel	807	3	NA	NA	-11918	0	at_least_one_novel_splicesite	FALSE	canonical	3	118	junction_1	2.5	1634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGTGTTCTGACTTAAAT	NA	False	NA	13	True	NA	NA	NA	34112190	34125649	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_34112309_34124501_34124892_34125292
ENSMUSG00000092354.8_101985308_101992198_1	chr5	+	659	3	NIC	ENSMUSG00000092354.8	novel	707	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_2	14.5	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAATTTCCTTTGGCTCA	NA	False	NA	15	True	ATTAAA	-25	NA	101985307	101992198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_101985425_101989616_101989710_101991749
ENSMUSG00000092354.8_101985308_101992198_2	chr5	+	841	3	NIC	ENSMUSG00000092354.8	novel	707	4	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	72	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAATTTCCTTTGGCTCA	NA	False	NA	15	True	ATTAAA	-25	NA	101985307	101992198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_101985377_101989616_101989940_101991749
ENSMUSG00000092354.8_101988021_101992198_1	chr5	+	849	3	NIC	ENSMUSG00000092354.8	novel	619	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	132	junction_1	6	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAATTTCCTTTGGCTCA	NA	False	NA	15	True	ATTAAA	-25	NA	101988020	101992198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_101988098_101989616_101989940_101991749
ENSMUSG00000092354.8_101988021_101992198_2	chr5	+	789	3	NNC	ENSMUSG00000092354.8	novel	619	3	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	72	165	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAATTTCCTTTGGCTCA	NA	False	NA	15	True	ATTAAA	-25	NA	101988020	101992198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_101988038_101989616_101989940_101991749
ENSMUSG00000092354.8_101988021_101992300_2	chr5	+	951	3	NIC	ENSMUSG00000092354.8	novel	619	3	NA	NA	0	102	intron_retention	FALSE	canonical	3	132	junction_1	6	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACCAGACCAGCTATGATA	NA	False	NA	117	True	ATTAAA	-31	NA	101988020	101992300	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_101988098_101989616_101989940_101991749
ENSMUSG00000092354.8_101988021_101994950_1	chr5	+	1181	4	NNC	ENSMUSG00000092354.8	novel	619	3	NA	NA	0	674	intron_retention	FALSE	non_canonical	0	0	junction_3	60.8604962188118	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGCTTGTCAAGTACCT	NA	False	NA	NA	False	AATAAA	-14	NA	101988020	101994950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_101988098_101989616_101989940_101992916_101993560_101994812
ENSMUSG00000092381.2_19450569_19483458_1	chr7	+	2695	9	Genic_Genomic	ENSMUSG00000092381.2	novel	618	2	NA	NA	1628	27802	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGGCCCCGCCCCTCTTCG	NA	False	NA	NA	False	NA	NA	NA	19450568	19483458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_19451713_19453120_19453208_19453357_19453422_19455277_19455432_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
ENSMUSG00000092386.2_72588486_72593730_1	chr6	+	1689	4	Genic_Genomic	ENSMUSG00000092386.2	novel	406	2	NA	NA	1667	557	multi-exon	FALSE	non_canonical	0	0	junction_1	0	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGACGTGAGAGCGGCGCA	NA	False	NA	NA	False	NA	NA	NA	72588485	72593730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_72589094_72591054_72591139_72592506_72593433_72593659
ENSMUSG00000092390.2_38306773_38322225_1	chr17	+	442	4	NNC	ENSMUSG00000092390.2	novel	1406	3	NA	NA	-13765	-1062	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	1.4142135623731	269	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGCTCTACAAATACATAAA	NA	False	NA	NA	False	NA	NA	NA	38306772	38322225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_38306872_38320538_38320666_38320869_38320931_38322070
ENSMUSG00000092390.2_38306773_38322225_2	chr17	+	605	4	NNC	ENSMUSG00000092390.2	novel	1406	3	NA	NA	-13765	-1062	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.7279220613579	465	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGCTCTACAAATACATAAA	NA	False	NA	NA	False	NA	NA	NA	38306772	38322225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_38307035_38320538_38320666_38320869_38320931_38322070
ENSMUSG00000092390.2_38306773_38322355_1	chr17	+	572	4	NNC	ENSMUSG00000092390.2	novel	1406	3	NA	NA	-13765	-932	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	1.4142135623731	294	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGTAGCCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	38306772	38322355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_38306872_38320538_38320666_38320869_38320931_38322070
ENSMUSG00000092390.2_38306773_38323488_1	chr17	+	1705	4	NNC	ENSMUSG00000092390.2	novel	1406	3	NA	NA	-13765	201	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	1.4142135623731	377	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTGCCTCCTCCTATATA	NA	False	NA	2	True	NA	NA	NA	38306772	38323488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_38306872_38320538_38320666_38320869_38320931_38322070
ENSMUSG00000092395.2_34820065_34822379_1	chr17	+	945	5	NNC	ENSMUSG00000092395.2	novel	366	2	NA	NA	-60	1829	intron_retention	FALSE	non_canonical	0	0	junction_1	0	110	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCTCGCCCCGCCCCGCTC	NA	False	NA	NA	False	NA	NA	NA	34820064	34822379	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_34820641_34820714_34820833_34820907_34820963_34821058_34821183_34822307
ENSMUSG00000092395.2_34820065_34822512_1	chr17	+	1093	5	NNC	ENSMUSG00000092395.2	novel	366	2	NA	NA	-60	1962	intron_retention	FALSE	non_canonical	0	0	junction_1	0	138	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGGCACACACACAGGCA	NA	False	NA	NA	False	NA	NA	NA	34820064	34822512	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_34820641_34820714_34820833_34820907_34820963_34821058_34821172_34822281
ENSMUSG00000092395.2_34820065_34822635_2	chr17	+	1193	6	NNC	ENSMUSG00000092395.2	novel	366	2	NA	NA	-60	2085	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3165	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATAGAATTCAAAGGACAC	NA	False	NA	NA	False	NA	NA	NA	34820064	34822635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_34820641_34820714_34820833_34820907_34820963_34821058_34821172_34821264_34821284_34822323
ENSMUSG00000092395.2_34820065_34822635_3	chr17	+	1147	4	NNC	ENSMUSG00000092395.2	novel	366	2	NA	NA	-60	2085	intron_retention	FALSE	non_canonical	0	0	junction_1	0	147	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATAGAATTCAAAGGACAC	NA	False	NA	NA	False	NA	NA	NA	34820064	34822635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_34820641_34820714_34820833_34821058_34821172_34822295
ENSMUSG00000092395.2_34820065_34822635_4	chr17	+	1190	5	NIC	ENSMUSG00000092395.2	novel	366	2	NA	NA	-60	2085	intron_retention	FALSE	non_canonical	0	0	junction_1	0	242	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATAGAATTCAAAGGACAC	NA	False	NA	NA	False	NA	NA	NA	34820064	34822635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_34820641_34820714_34820833_34820907_34820963_34821058_34821172_34822307
ENSMUSG00000092395.2_34820065_34822635_6	chr17	+	1201	5	NNC	ENSMUSG00000092395.2	novel	366	2	NA	NA	-60	2085	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4057	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATAGAATTCAAAGGACAC	NA	False	NA	NA	False	NA	NA	NA	34820064	34822635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_34820641_34820714_34820833_34820907_34820963_34821058_34821183_34822307
ENSMUSG00000092395.2_34820065_34822635_7	chr17	+	1358	4	NIC	ENSMUSG00000092395.2	novel	366	2	NA	NA	-60	2085	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1453	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATAGAATTCAAAGGACAC	NA	False	NA	NA	False	NA	NA	NA	34820064	34822635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_34820963_34821058_34821172_34821264_34821284_34822307
ENSMUSG00000092395.2_34820065_34822635_8	chr17	+	1208	5	NNC	ENSMUSG00000092395.2	novel	366	2	NA	NA	-60	2085	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3515	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATAGAATTCAAAGGACAC	NA	False	NA	NA	False	NA	NA	NA	34820064	34822635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_34820641_34820714_34820833_34820907_34820963_34821058_34821190_34822307
ENSMUSG00000092416.3_42125964_42155150_1	chr7	-	885	7	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	0	-130	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_4	78.7541886011292	180	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTTTGCACTGCATAATAA	NA	False	NA	NA	False	AATAAA	-13	NA	42155150	42125963	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42150781_42150850_42155033
ENSMUSG00000092417.4_35340458_35343791_1	chr17	+	1272	3	NIC	ENSMUSG00000092417.4	novel	676	2	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	24	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTTTACTTTCTTGAAT	4588	False	NA	15	True	AATAAA	-15	NA	35340457	35343791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_35340527_35342028_35342636_35343195
ENSMUSG00000092417.4_35340637_35343791_1	chr17	+	1341	3	FSM	ENSMUSG00000092417.4	ENSMUST00000165306.3	1518	3	178	-1	0	1	multi-exon	FALSE	canonical	3	45	junction_1	21.5	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTTTACTTTCTTGAAT	4767	False	NA	15	True	AATAAA	-15	NA	35340636	35343791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35340775_35342028_35342636_35343195
ENSMUSG00000092558.4_47922523_47935176_1	chr17	+	1617	3	NIC	ENSMUSG00000092558.4	novel	2054	4	NA	NA	-10	3	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	133.5	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTTTTGGCCTTCTGGTCT	NA	False	NA	11	True	AATAAA	-16	NA	47922522	47935176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_47922618_47923887_47924043_47933809
ENSMUSG00000092558.4_47922523_47935176_2	chr17	+	1866	4	NNC	ENSMUSG00000092558.4	novel	2054	4	NA	NA	-10	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	116.659999809513	1241	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTTTTGGCCTTCTGGTCT	NA	False	NA	11	True	AATAAA	-16	NA	47922522	47935176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_47922618_47923887_47924043_47929738_47929988_47933809
ENSMUSG00000092558.4_47922523_47935176_3	chr17	+	1871	4	FSM	ENSMUSG00000092558.4	ENSMUST00000024778.3	2054	4	16	167	-10	3	multi-exon	FALSE	canonical	3	195	junction_2	32.2937902527543	1262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTTTTGGCCTTCTGGTCT	NA	False	NA	11	True	AATAAA	-16	NA	47922522	47935176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_47922618_47923887_47924043_47929733_47929988_47933809
ENSMUSG00000092564.3_34127156_34128187_2	chr17	-	438	2	FSM	ENSMUSG00000092564.3	ENSMUST00000174321.2	430	2	104	-112	-4	0	multi-exon	FALSE	canonical	2	5	junction_1	0	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATATTCCCTTTTACG	1219	False	NA	-5	True	AATAAA	-23	NA	34128187	34127155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34127561_34128154
ENSMUSG00000092564.3_34127156_34128291_1	chr17	-	570	2	FSM	ENSMUSG00000092564.3	ENSMUST00000174467.2	462	2	-108	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATATTCCCTTTTACG	1115	False	NA	-5	True	AATAAA	-23	NA	34128291	34127155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34127561_34128126
ENSMUSG00000092564.3_34127156_34128291_2	chr17	-	542	2	FSM	ENSMUSG00000092564.3	ENSMUST00000174321.2	430	2	0	-112	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATATTCCCTTTTACG	1115	False	NA	-5	True	AATAAA	-23	NA	34128291	34127155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34127561_34128154
ENSMUSG00000092586.9_35284364_35289026_1	chr17	+	1016	4	NNC	ENSMUSG00000092586.9	novel	598	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	2.16024689946929	22	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTTGTGTTTATTGTTAGA	NA	False	NA	NA	False	AATAAA	-17	NA	35284363	35289026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_35284420_35286302_35286421_35287842_35287954_35288295
ENSMUSG00000092607.10_95037031_95041266_1	chr3	-	814	7	FSM	ENSMUSG00000092607.10	ENSMUST00000172572.9	1054	7	56	184	-16	0	multi-exon	FALSE	canonical	3	365	junction_2	27.675199487387	2195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGGAGTCCGGTTCCTT	1294	False	NA	-24	True	AATAAA	-27	NA	95041266	95037030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95037195_95037474_95037670_95040135_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155
ENSMUSG00000092607.10_95037031_95041266_2	chr3	-	809	7	NNC	ENSMUSG00000092607.10	novel	1054	7	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	149.532326493861	1941	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGGAGTCCGGTTCCTT	1294	False	NA	-24	True	AATAAA	-27	NA	95041266	95037030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_95037195_95037474_95037665_95040135_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155
ENSMUSG00000092607.10_95037031_95041266_3	chr3	-	848	7	NNC	ENSMUSG00000092607.10	novel	1054	7	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_2	139.962395743365	779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGGAGTCCGGTTCCTT	1294	False	NA	-24	True	AATAAA	-27	NA	95041266	95037030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_95037195_95037474_95037670_95040101_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155
ENSMUSG00000092607.10_95037031_95041266_4	chr3	-	893	7	NIC	ENSMUSG00000092607.10	novel	1054	7	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	150.104870747828	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGGAGTCCGGTTCCTT	1294	False	NA	-24	True	AATAAA	-27	NA	95041266	95037030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_95037274_95037474_95037670_95040135_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155
ENSMUSG00000092607.10_95037031_95041266_5	chr3	-	725	6	NIC	ENSMUSG00000092607.10	novel	1054	7	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	46	junction_2	146.199042404525	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGGAGTCCGGTTCCTT	1294	False	NA	-24	True	AATAAA	-27	NA	95041266	95037030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_95037195_95037474_95037670_95040327_95040423_95040510_95040600_95040868_95040940_95041155
ENSMUSG00000092607.10_95037031_95041266_6	chr3	-	809	7	NNC	ENSMUSG00000092607.10	novel	1054	7	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	149.390614014253	1092	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGGAGTCCGGTTCCTT	1294	False	NA	-24	True	AATAAA	-27	NA	95041266	95037030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_95037195_95037474_95037670_95040135_95040225_95040327_95040423_95040515_95040600_95040868_95040940_95041155
ENSMUSG00000092607.10_95037031_95041323_1	chr3	-	1140	6	NIC	ENSMUSG00000092607.10	novel	1054	7	NA	NA	-1	0	intron_retention	FALSE	canonical	3	365	junction_2	23.7352059186349	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGGAGTCCGGTTCCTT	1237	False	NA	-24	True	AATAAA	-27	NA	95041323	95037030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_95037195_95037474_95037670_95040135_95040225_95040327_95040423_95040510_95040940_95041155
ENSMUSG00000092607.10_95039829_95041266_1	chr3	-	762	5	ISM	ENSMUSG00000092607.10	ENSMUST00000173462.3	666	6	56	2789	-16	-2225	5prime_fragment	FALSE	canonical	3	372	junction_4	25.2623732060153	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTTTTCAGGTTTTTTG	1294	False	NA	NA	False	NA	NA	NA	95041266	95039828	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155
ENSMUSG00000093314.3_8865751_8866574_1	chr19	-	316	3	Genic_Genomic	ENSMUSG00000093314.3	novel	76	1	NA	NA	-436	312	multi-exon	FALSE	canonical	2	2	junction_2	273	1964	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCCTGTGTTCGCTACCT	NA	False	NA	-38	True	AATAAA	-16	NA	8866574	8865750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr19_-_8865832_8866113_8866239_8866464
ENSMUSG00000093394.2_88773983_88775351_1	chr15	-	1184	2	NNC	ENSMUSG00000093394.2	novel	1234	2	NA	NA	335	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCCAATGTGTGACAGT	NA	False	NA	-3	True	NA	NA	NA	88775351	88773982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_88775099_88775283
ENSMUSG00000093394.2_88774711_88775351_1	chr15	-	456	2	NNC	ENSMUSG00000093394.2	novel	730	2	NA	NA	335	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACAG	NA	False	NA	NA	False	NA	NA	NA	88775351	88774710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_88775099_88775283
ENSMUSG00000093516.2_35816915_35821669_1	chr17	-	1347	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-221	3059	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	25101	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTCTAGCCTTGACCTC	NA	False	NA	NA	False	NA	NA	NA	35821669	35816914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_35817381_35819999_35820121_35820304_35820436_35820892_35821037_35821184
ENSMUSG00000093516.2_35816915_35821669_2	chr17	-	1357	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-221	3059	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	42346	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTCTAGCCTTGACCTC	NA	False	NA	NA	False	NA	NA	NA	35821669	35816914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_35817381_35819999_35820121_35820309_35820436_35820877_35821037_35821184
ENSMUSG00000093516.2_35816915_35821669_3	chr17	-	1352	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-221	3059	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	23060	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTCTAGCCTTGACCTC	NA	False	NA	NA	False	NA	NA	NA	35821669	35816914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821194
ENSMUSG00000093516.2_35816915_35821669_4	chr17	-	1353	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-221	3059	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	20632	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTCTAGCCTTGACCTC	NA	False	NA	NA	False	NA	NA	NA	35821669	35816914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_35817381_35819999_35820125_35820317_35820436_35820877_35821037_35821184
ENSMUSG00000093516.2_35816915_35821669_5	chr17	-	1347	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-221	3059	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	27704	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTCTAGCCTTGACCTC	NA	False	NA	NA	False	NA	NA	NA	35821669	35816914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_35817381_35819999_35820111_35820309_35820436_35820877_35821037_35821184
ENSMUSG00000093516.2_35816915_35821669_6	chr17	-	1352	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-221	3059	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	18731	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTCTAGCCTTGACCTC	NA	False	NA	NA	False	NA	NA	NA	35821669	35816914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_35817381_35819999_35820111_35820304_35820436_35820877_35821037_35821184
ENSMUSG00000093516.2_35817146_35821669_1	chr17	-	1131	5	NIC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-221	2828	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	14324	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGTCCGATTCCAGG	NA	False	NA	NA	False	NA	NA	NA	35821669	35817145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
ENSMUSG00000093594.2_147878312_147893864_1	chr4	-	313	4	NNC	ENSMUSG00000093594.2	novel	2516	4	NA	NA	433	-11536	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	19.4821855949366	202	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTGTTGTTGGTTTTTT	9904	False	NA	NA	False	NA	NA	NA	147893864	147878311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_-_147878372_147880114_147880185_147891546_147891641_147893775
ENSMUSG00000093622.2_71141659_71143181_1	chr17	+	527	2	FSM	ENSMUSG00000093622.2	ENSMUST00000175668.2	385	2	0	-142	0	142	multi-exon	FALSE	canonical	3	64	junction_1	0	931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTCTATCTTTTTTTT	280	False	NA	138	True	AATACA	-14	NA	71141658	71143181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_71141798_71142793
ENSMUSG00000093637.2_112490966_112526280_1	chr5	-	2831	14	Genic_Genomic	ENSMUSG00000093637.2	novel	707	3	NA	NA	-775	31269	multi-exon	FALSE	non_canonical	0	0	junction_1	0	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACGTGAGGTGTGACGCA	NA	False	NA	NA	False	GGGGCT	-6	NA	112526280	112490965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_-_112491030_112492406_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
ENSMUSG00000093674.8_128383983_128384981_1	chr10	-	514	2	NNC	ENSMUSG00000093674.8	novel	544	3	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	0	31258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128384981	128383982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128384299_128384783
ENSMUSG00000093674.8_128383983_128384981_2	chr10	-	363	2	NIC	ENSMUSG00000093674.8	novel	437	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	18529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128384981	128383982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_128384321_128384956
ENSMUSG00000093674.8_128383983_128384981_3	chr10	-	495	2	NNC	ENSMUSG00000093674.8	novel	544	3	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	0	52709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128384981	128383982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128384299_128384802
ENSMUSG00000093674.8_128383983_128384981_4	chr10	-	480	2	NIC	ENSMUSG00000093674.8	novel	544	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	2727	junction_1	0	33664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128384981	128383982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_128384299_128384817
ENSMUSG00000093674.8_128383983_128384981_5	chr10	-	369	2	NNC	ENSMUSG00000093674.8	novel	544	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	25901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128384981	128383982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128384299_128384928
ENSMUSG00000093674.8_128383983_128384981_6	chr10	-	885	2	FSM	ENSMUSG00000093674.8	ENSMUST00000176966.2	523	2	0	-362	0	0	multi-exon	FALSE	canonical	3	7075	junction_1	0	15923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128384981	128383982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128384843_128384956
ENSMUSG00000093674.8_128383983_128384981_7	chr10	-	381	3	NNC	ENSMUSG00000093674.8	novel	582	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3537.5	595356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128384981	128383982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128384299_128384802_128384843_128384956
ENSMUSG00000093674.8_128383983_128385034_1	chr10	-	453	3	NNC	ENSMUSG00000093674.8	novel	582	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3537.5	181511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128385034	128383982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128384299_128384783_128384843_128384956
ENSMUSG00000093674.8_128383989_128384981_1	chr10	-	394	3	NNC	ENSMUSG00000093674.8	novel	680	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3537.5	171689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAACTGCTGTTACGTGT	NA	False	NA	-24	True	AATAAA	-23	NA	128384981	128383988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128384299_128384783_128384843_128384956
ENSMUSG00000093674.8_128383989_128385034_1	chr10	-	428	3	NNC	ENSMUSG00000093674.8	novel	680	3	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3537.5	608809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAACTGCTGTTACGTGT	NA	False	NA	-24	True	AATAAA	-23	NA	128385034	128383988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128384299_128384802_128384843_128384956
ENSMUSG00000093674.8_128384091_128384981_1	chr10	-	387	2	NNC	ENSMUSG00000093674.8	novel	523	2	NA	NA	0	-101	intron_retention	FALSE	canonical	0	0	junction_1	0	2124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTCCCTCTGCCCTGGAC	NA	False	NA	-126	True	NA	NA	NA	128384981	128384090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_128384299_128384802
ENSMUSG00000093803.6_124195827_124202490_1	chr9	+	1765	13	NNC	ENSMUSG00000093803.6	novel	4016	11	NA	NA	0	1094	at_least_one_novel_splicesite	TRUE	canonical	3	45	junction_1	43.8003678320425	585	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCCTGGGGTGCACAGTC	NA	False	NA	17	True	AATAAA	-18	NA	124195826	124202490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_124196070_124197152_124197351_124197648_124197753_124197928_124198032_124198703_124198779_124199151_124199239_124199674_124199832_124200091_124200141_124200416_124200507_124200880_124201057_124201276_124201396_124201794_124201908_124202239
ENSMUSG00000093803.6_124199449_124202493_1	chr9	+	1084	8	NNC	ENSMUSG00000093803.6	novel	385	3	NA	NA	-968	1097	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	58.6118327539372	230	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGGGTGCACAGTCAGG	NA	False	NA	20	True	AATAAA	-21	NA	124199448	124202493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_124199575_124199674_124199832_124200091_124200141_124200416_124200507_124200880_124201057_124201276_124201396_124201794_124201908_124202239
ENSMUSG00000093803.6_124203002_124239732_1	chr9	+	854	2	NNC	ENSMUSG00000093803.6	novel	777	2	NA	NA	763	34973	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	126	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGAAACTCGCGCCAAGG	NA	False	NA	NA	False	NA	NA	NA	124203001	124239732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_124203757_124239633
ENSMUSG00000093904.3_127661536_127672594_1	chr8	-	787	5	FSM	ENSMUSG00000093904.3	ENSMUST00000179857.3	4902	5	-4	4119	0	200	multi-exon	FALSE	canonical	3	5050	junction_1	881.47603484156	10335	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCATGGATTTCCGTTTGT	NA	False	NA	NA	False	TATAAA	-19	NA	127672594	127661535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_127661810_127663789_127663933_127666621_127666704_127667928_127667976_127672353
ENSMUSG00000093930.3_120151982_120169618_1	chr13	+	3304	11	FSM	ENSMUSG00000093930.3	ENSMUST00000224188.2	3464	11	-18	178	0	0	multi-exon	FALSE	canonical	3	184	junction_1	180.959553491934	637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	15	True	AATAAA	-15	NA	120151981	120169618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_120152050_120156524_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
ENSMUSG00000094103.3_55246377_55260864_3	chr12	+	774	5	FSM	ENSMUSG00000094103.3	ENSMUST00000177978.3	3863	5	0	3089	0	-3089	multi-exon	FALSE	canonical	3	88	junction_4	12.794041581924	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCCAATCAGGAGCTTT	NA	False	NA	NA	False	TATAAA	-16	NA	55246376	55260864	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_55246572_55252464_55252639_55257516_55257584_55258966_55259065_55260624
ENSMUSG00000094103.3_55246377_55260864_4	chr12	+	609	3	NIC	ENSMUSG00000094103.3	novel	3863	5	NA	NA	0	-3089	combination_of_known_splicesites	FALSE	canonical	3	4	junction_2	60	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCCAATCAGGAGCTTT	NA	False	NA	NA	False	TATAAA	-16	NA	55246376	55260864	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_55246572_55252464_55252639_55260624
ENSMUSG00000094103.3_55246377_55261443_3	chr12	+	1353	5	FSM	ENSMUSG00000094103.3	ENSMUST00000177978.3	3863	5	0	2510	0	-2510	multi-exon	FALSE	canonical	3	88	junction_4	12.794041581924	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGTGGATTTCCTTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	55246376	55261443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_55246572_55252464_55252639_55257516_55257584_55258966_55259065_55260624
ENSMUSG00000094103.3_55246377_55261443_4	chr12	+	1344	5	NNC	ENSMUSG00000094103.3	novel	3863	5	NA	NA	0	-2510	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	49.4033146661234	153	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGTGGATTTCCTTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	55246376	55261443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_55246572_55252464_55252639_55257516_55257584_55258966_55259065_55260633
ENSMUSG00000094151.2_42988598_43045109_1	chr14	+	1406	4	Fusion	ENSMUSG00000094151.2_ENSMUSG00000115262.2	novel	690	2	NA	NA	-263	-336	multi-exon	FALSE	canonical	0	0	junction_1	11.6714276000077	549	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	42988597	43045109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr14_+_42988898_43039360_43039493_43040175_43040358_43044317
ENSMUSG00000094152.6_44917574_44922789_1	chr7	+	1173	5	NNC	ENSMUSG00000094152.6	novel	1241	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	5.35607132140714	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGCGTGAGGCTCGATTT	NA	False	NA	NA	False	AATAAA	-19	NA	44917573	44922789	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_44917623_44917871_44918074_44918141_44918357_44921914_44922078_44922245
ENSMUSG00000094365.2_30340426_30349569_1	chr7	-	1545	9	NIC	ENSMUSG00000036733.17	novel	1784	10	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	3	44	junction_5	308.813227331667	2109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTGACTGGACTTAGAAA	3784	False	NA	-14	True	AATAAA	-16	NA	30349569	30340425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345268_30346984_30347060_30347155_30347241_30349008_30349145_30349362
ENSMUSG00000094365.2_30340426_30349569_2	chr7	-	1514	9	NNC	ENSMUSG00000036733.17	novel	1526	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	360.088183643951	1664	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTGACTGGACTTAGAAA	3784	False	NA	-14	True	AATAAA	-16	NA	30349569	30340425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345247_30346984_30347060_30347165_30347241_30349008_30349145_30349362
ENSMUSG00000094365.2_30340426_30349569_3	chr7	-	1611	10	FSM	ENSMUSG00000036733.17	ENSMUST00000042726.14	1784	10	173	0	0	0	multi-exon	FALSE	canonical	3	640	junction_5	133.345925331332	2140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTGACTGGACTTAGAAA	3784	False	NA	-14	True	AATAAA	-16	NA	30349569	30340425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345268_30345343_30345410_30346984_30347060_30347155_30347241_30349008_30349145_30349362
ENSMUSG00000094372.2_135661558_135673002_1	chr5	-	1893	4	NIC	ENSMUSG00000094372.2	novel	378	2	NA	NA	188	11251	intron_retention	FALSE	non_canonical	0	0	junction_1	0	423	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCTCCCTCCTCAATTTC	NA	False	NA	NA	False	NA	NA	NA	135673002	135661557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_135661773_135664848_135665257_135667943_135668095_135671883
ENSMUSG00000094475.8_174846538_175443705_1	chr2	+	864	4	NNC	ENSMUSG00000094475.8	novel	1497	4	NA	NA	-589233	511	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	127.185778380376	819	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAATTTTCACTTGTTA	NA	False	NA	NA	False	NA	NA	NA	174846537	175443705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_174846644_175435718_175435774_175442797_175442925_175443129
ENSMUSG00000094475.8_174846538_175444055_1	chr2	+	1214	4	NNC	ENSMUSG00000094475.8	novel	1497	4	NA	NA	-589233	861	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	127.185778380376	1084	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTGAGTTCTTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	174846537	175444055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_174846644_175435718_175435774_175442797_175442925_175443129
ENSMUSG00000094475.8_174846538_175444459_1	chr2	+	461	5	NNC	ENSMUSG00000094475.8	novel	1497	4	NA	NA	-589233	-1194	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	116.363654119317	896	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	174846537	175444459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_174846644_175435718_175435774_175442797_175442925_175443129_175443191_175444347
ENSMUSG00000094475.8_175432159_175444459_1	chr2	+	460	5	NNC	ENSMUSG00000094475.8	novel	1497	4	NA	NA	-3612	-1194	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	108.699126031445	97	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	175432158	175444459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_175432264_175435718_175435774_175442797_175442925_175443129_175443191_175444347
ENSMUSG00000094499.4_66516515_66549934_1	chr13	-	1630	5	NNC	ENSMUSG00000094499.4	novel	3029	10	NA	NA	-2	-17302	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_3	9.82344135219425	1691	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAAATAAAGTTTCTTC	NA	False	NA	NA	False	AATAAA	-24	NA	66549934	66516514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66517022_66518268_66518952_66519399_66519543_66528836_66529024_66549824
ENSMUSG00000094499.4_66518841_66589186_1	chr13	-	360	3	Fusion	ENSMUSG00000074832.12_ENSMUSG00000094499.4	novel	515	5	NA	NA	-7	-19628	multi-exon	FALSE	canonical	0	0	junction_2	16.5	532	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCAGTGTCTATTGTTC	NA	False	NA	NA	False	NA	NA	NA	66589186	66518840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr13_-_66518952_66519399_66519543_66589080
ENSMUSG00000094724.9_7246407_7265589_1	chr17	+	804	8	NIC	ENSMUSG00000094724.9	novel	1783	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	253.225961850483	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGGCTTTTTCTTGT	NA	False	NA	NA	False	AAAAAG	-11	NA	7246406	7265589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_7246498_7248506_7248568_7251537_7251591_7256120_7256192_7259079_7259194_7262027_7262074_7263832_7263908_7265296
ENSMUSG00000094786.2_177156532_177200358_1	chr2	+	410	4	Fusion	ENSMUSG00000094786.2_ENSMUSG00000078866.11	novel	794	4	NA	NA	6	-304	multi-exon	FALSE	canonical	3	106	junction_1	58.3837877040079	729	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	17	True	NA	NA	NA	177156531	177200358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_+_177156642_177198701_177198829_177199035_177199097_177200246
ENSMUSG00000094786.2_177190008_177199243_1	chr2	+	493	4	NIC	ENSMUSG00000094786.2	novel	701	4	NA	NA	0	-1419	combination_of_known_junctions	FALSE	canonical	3	153	junction_2	39.4208066888541	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCAGATATGTAATTATTG	NA	False	NA	NA	False	NA	NA	NA	177190007	177199243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035
ENSMUSG00000094786.2_177190008_177199623_1	chr2	+	873	4	NIC	ENSMUSG00000094786.2	novel	701	4	NA	NA	0	-1039	combination_of_known_junctions	FALSE	canonical	3	153	junction_2	39.4208066888541	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTATTCTTCTTTTGAT	NA	False	NA	NA	False	NA	NA	NA	177190007	177199623	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035
ENSMUSG00000094786.2_177190008_177199955_1	chr2	+	590	4	NNC	ENSMUSG00000094786.2	novel	1209	4	NA	NA	0	-707	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	98.435540103946	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGTGAGTTCGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	177190007	177199955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_177190111_177198701_177198829_177199035_177199097_177199656
ENSMUSG00000094786.2_177190008_177199955_2	chr2	+	1205	4	NIC	ENSMUSG00000094786.2	novel	701	4	NA	NA	0	-707	combination_of_known_junctions	FALSE	canonical	3	153	junction_2	39.4208066888541	999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGTGAGTTCGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	177190007	177199955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035
ENSMUSG00000094786.2_177190008_177200358_1	chr2	+	458	5	NIC	ENSMUSG00000094786.2	novel	701	4	NA	NA	0	-304	combination_of_known_junctions	FALSE	canonical	3	153	junction_2	35.4436171968946	1455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	17	True	NA	NA	NA	177190007	177200358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035_177199097_177200246
ENSMUSG00000094786.2_177190008_177200358_2	chr2	+	403	4	FSM	ENSMUSG00000094786.2	ENSMUST00000108947.3	1209	4	-100	906	0	-304	multi-exon	FALSE	canonical	3	122	junction_1	52.0405824546788	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	17	True	NA	NA	NA	177190007	177200358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_177190111_177198701_177198829_177199035_177199097_177200246
ENSMUSG00000094786.2_177190108_177200358_1	chr2	+	358	5	NIC	ENSMUSG00000094786.2	novel	1209	4	NA	NA	0	-304	combination_of_known_junctions	FALSE	canonical	3	153	junction_2	35.4436171968946	751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	17	True	NA	NA	NA	177190107	177200358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035_177199097_177200246
ENSMUSG00000094910.2_105420115_105454320_1	chr12	+	752	2	FSM	ENSMUSG00000094910.2	ENSMUST00000178224.2	5786	2	0	5034	0	-5034	multi-exon	FALSE	canonical	3	15	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGATGGCTTGAGTCCTT	NA	False	NA	NA	False	NA	NA	NA	105420114	105454320	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_105420410_105453863
ENSMUSG00000094910.2_105420115_105454441_1	chr12	+	873	2	FSM	ENSMUSG00000094910.2	ENSMUST00000178224.2	5786	2	0	4913	0	-4913	multi-exon	FALSE	canonical	3	15	junction_1	0	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTTAGCAGTCAATTAT	NA	False	NA	NA	False	NA	NA	NA	105420114	105454441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_105420410_105453863
ENSMUSG00000094910.2_105420115_105454692_1	chr12	+	1124	2	FSM	ENSMUSG00000094910.2	ENSMUST00000178224.2	5786	2	0	4662	0	-4662	multi-exon	FALSE	canonical	3	15	junction_1	0	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACTGGAATGAACTTTCT	NA	False	NA	NA	False	NA	NA	NA	105420114	105454692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_105420410_105453863
ENSMUSG00000094932.8_175529711_175541264_1	chr2	+	862	4	NNC	ENSMUSG00000094932.8	novel	1497	4	NA	NA	-3619	511	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	111.283421945948	133	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAATTTTCACTTGTTA	NA	False	NA	NA	False	NA	NA	NA	175529710	175541264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_175529815_175533277_175533333_175540356_175540484_175540688
ENSMUSG00000094932.8_175529711_175542018_1	chr2	+	459	5	NNC	ENSMUSG00000094932.8	novel	1497	4	NA	NA	-3619	-1194	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	106.376689175778	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	175529710	175542018	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_175529815_175533277_175533333_175540356_175540484_175540688_175540750_175541906
ENSMUSG00000095098.3_5506576_5507532_1	chr19	-	802	2	FSM	ENSMUSG00000095098.3	ENSMUST00000236881.2	4165	2	0	3363	0	-3363	multi-exon	FALSE	canonical	3	6	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCCGAAGCCTGGCCAGC	5331	False	NA	-9	True	AATAAA	-15	NA	5507532	5506575	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5507213_5507367
ENSMUSG00000095180.11_36891636_36897311_1	chrX	+	895	5	NNC	ENSMUSG00000095180.11	novel	893	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1670.35011300027	3720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTGATTCGAGTAATAT	8505	False	NA	20	True	ATTAAA	-17	NA	36891635	36897311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_36891707_36892583_36892653_36893274_36893357_36893532_36893936_36897041
ENSMUSG00000095180.11_36891636_36897311_2	chrX	+	873	5	NNC	ENSMUSG00000095180.11	novel	893	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1577.07345659611	3108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTGATTCGAGTAATAT	8505	False	NA	20	True	ATTAAA	-17	NA	36891635	36897311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_36891707_36892583_36892712_36893532_36893891_36894500_36894547_36897041
ENSMUSG00000095180.11_36891636_36897311_3	chrX	+	883	6	NNC	ENSMUSG00000095180.11	novel	893	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1568.12389816621	23681	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTGATTCGAGTAATAT	8505	False	NA	20	True	ATTAAA	-17	NA	36891635	36897311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_36891707_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894534_36897041
ENSMUSG00000095180.11_36891636_36897311_4	chrX	+	899	6	NNC	ENSMUSG00000095180.11	novel	893	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1551.00759508134	32827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTGATTCGAGTAATAT	8505	False	NA	20	True	ATTAAA	-17	NA	36891635	36897311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_36891707_36892583_36892653_36893274_36893369_36893541_36893891_36894500_36894547_36897041
ENSMUSG00000095180.11_36891636_36897311_5	chrX	+	1009	6	NNC	ENSMUSG00000095180.11	novel	893	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	1592.14803331851	13784	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTGATTCGAGTAATAT	8505	False	NA	20	True	ATTAAA	-17	NA	36891635	36897311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_36891820_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
ENSMUSG00000095180.11_36891636_36897311_6	chrX	+	827	5	NIC	ENSMUSG00000095180.11	novel	893	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	1677.76592527086	2642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTGATTCGAGTAATAT	8505	False	NA	20	True	ATTAAA	-17	NA	36891635	36897311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_36891707_36893274_36893357_36893532_36893891_36894500_36894547_36897041
ENSMUSG00000095180.11_36891636_36897311_7	chrX	+	888	6	NNC	ENSMUSG00000095180.11	novel	893	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1550.62782123887	38911	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTGATTCGAGTAATAT	8505	False	NA	20	True	ATTAAA	-17	NA	36891635	36897311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_36891707_36892583_36892653_36893274_36893357_36893532_36893883_36894500_36894547_36897041
ENSMUSG00000095180.11_36891636_36897311_8	chrX	+	589	6	NNC	ENSMUSG00000095180.11	novel	893	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_4	1520.25637311606	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTGATTCGAGTAATAT	8505	False	NA	20	True	ATTAAA	-17	NA	36891635	36897311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_36891707_36892583_36892653_36893274_36893357_36893532_36893584_36894500_36894547_36897041
ENSMUSG00000095180.11_36892095_36897311_1	chrX	+	1000	6	NNC	ENSMUSG00000095180.11	novel	766	2	NA	NA	-228	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1593.74095762141	7158	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTGATTCGAGTAATAT	8964	False	NA	20	True	ATTAAA	-17	NA	36892094	36897311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_36892270_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
ENSMUSG00000095180.11_36892159_36897311_1	chrX	+	936	6	NNC	ENSMUSG00000095180.11	novel	766	2	NA	NA	-164	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1593.74095762141	7028	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTGATTCGAGTAATAT	9028	False	NA	20	True	ATTAAA	-17	NA	36892158	36897311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_36892270_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
ENSMUSG00000095193.3_95172346_95183158_1	chr17	+	488	4	FSM	ENSMUSG00000095193.3	ENSMUST00000234295.2	3079	4	0	2591	0	674	multi-exon	FALSE	canonical	3	81	junction_3	17.6635217326557	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAATCAATGTGGTAAAGC	NA	False	NA	NA	False	NA	NA	NA	95172345	95183158	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_95172441_95181413_95181541_95181729_95181791_95182953
ENSMUSG00000095199.9_176031683_176221326_2	chr2	+	540	3	NNC	ENSMUSG00000095199.9	novel	461	4	NA	NA	-181110	-324	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	11.5	642	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGTAATTATTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	176031682	176221326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_176031884_176220781_176220909_176221114
ENSMUSG00000095199.9_176031683_176412412_1	chr2	+	501	4	Fusion	ENSMUSG00000095199.9_ENSMUSG00000078878.10	novel	461	4	NA	NA	-181110	416	multi-exon	FALSE	canonical	3	6	junction_3	17.1723291631883	435	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	176031682	176412412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_+_176031884_176220781_176220909_176221114_176221176_176412300
ENSMUSG00000095293.8_27704433_27717772_1	chrX	-	614	6	NNC	ENSMUSG00000095293.8	novel	893	9	NA	NA	7941	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.2	400	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	27717772	27704432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_27704624_27704942_27705042_27707491_27707574_27715774_27715839_27716147_27716274_27717720
ENSMUSG00000095304.10_25888444_25902911_1	chr14	-	933	4	FSM	ENSMUSG00000095304.10	ENSMUST00000183431.8	536	4	-13	-384	-11	384	multi-exon	TRUE	canonical	3	49	junction_3	71.4624998785299	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATGCATTTCCAGTTTCT	NA	False	NA	NA	False	NA	NA	NA	25902911	25888443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_25888951_25889319_25889444_25891184_25891280_25902704
ENSMUSG00000095304.10_25888828_25902911_1	chr14	-	410	4	NNC	ENSMUSG00000095304.10	novel	536	4	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_3	82.174610839764	460	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCTAGCCATGACCTCT	NA	False	NA	-14	True	AATAAA	-18	NA	25902911	25888827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_25888951_25889319_25889444_25891184_25891280_25902843
ENSMUSG00000095315.3_150153351_150167448_1	chr2	+	675	4	FSM	ENSMUSG00000095315.3	ENSMUST00000238230.2	2159	4	0	1484	0	-1484	multi-exon	FALSE	canonical	3	122	junction_3	5.43650214343336	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCATGAGTGTAATCAAAGT	NA	False	NA	NA	False	NA	NA	NA	150153350	150167448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_150153479_150165621_150165749_150165947_150166009_150167089
ENSMUSG00000095362.8_177474778_177482116_1	chr2	-	387	4	FSM	ENSMUSG00000095362.8	ENSMUST00000108939.9	1576	4	-5	1194	-5	-1194	multi-exon	FALSE	canonical	3	248	junction_1	217.946476609893	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177482116	177474777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_177474890_177476043_177476105_177476312_177476440_177482029
ENSMUSG00000095362.8_177475263_177482116_1	chr2	-	1056	3	FSM	ENSMUSG00000095362.8	ENSMUST00000150650.2	310	3	13	-759	-5	759	multi-exon	FALSE	canonical	3	312	junction_1	213.5	5230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTTGCATTTGTTCA	NA	False	NA	-5	True	NA	NA	NA	177482116	177475262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_177476105_177476312_177476440_177482029
ENSMUSG00000095362.8_177475530_177482116_1	chr2	-	789	3	FSM	ENSMUSG00000095362.8	ENSMUST00000150650.2	310	3	13	-492	-5	492	multi-exon	FALSE	canonical	3	312	junction_1	213.5	2249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAATTTTCACTTGTTA	NA	False	NA	-12	True	NA	NA	NA	177482116	177475529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_177476105_177476312_177476440_177482029
ENSMUSG00000095362.8_177475893_177482116_1	chr2	-	426	3	FSM	ENSMUSG00000095362.8	ENSMUST00000150650.2	310	3	13	-129	-5	129	multi-exon	FALSE	canonical	3	312	junction_1	213.5	1357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATGAAATTATTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	177482116	177475892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_177476105_177476312_177476440_177482029
ENSMUSG00000095362.8_177476022_177599087_1	chr2	-	297	3	Fusion	ENSMUSG00000095362.8_ENSMUSG00000078862.11	novel	310	3	NA	NA	3	0	multi-exon	FALSE	canonical	3	312	junction_1	246	339	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAAAATTCCTATGAAGA	NA	False	NA	NA	False	NA	NA	NA	177599087	177476021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_-_177476105_177476312_177476440_177599000
ENSMUSG00000095567.9_156329886_156331880_1	chr4	+	743	4	ISM	ENSMUSG00000095567.9	ENSMUST00000179543.8	2785	19	9419	193	3708	-180	3prime_fragment	FALSE	canonical	3	1821	junction_1	105.749179140497	502	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTTTGTTTGTTTTTT	NA	False	NA	25	True	GATAAA	-20	NA	156329885	156331880	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_156330001_156330287_156330424_156331133_156331221_156331475
ENSMUSG00000095567.9_156330326_156331880_1	chr4	+	590	3	ISM	ENSMUSG00000095567.9	ENSMUST00000179543.8	2785	19	9859	193	4148	-180	3prime_fragment	FALSE	canonical	3	2038	junction_1	7	367	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTTTGTTTGTTTTTT	NA	False	NA	25	True	GATAAA	-20	NA	156330325	156331880	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_156330424_156331133_156331221_156331475
ENSMUSG00000095567.9_156330326_156332060_1	chr4	+	770	3	ISM	ENSMUSG00000095567.9	ENSMUST00000179543.8	2785	19	9859	13	4148	0	3prime_fragment	FALSE	canonical	3	2038	junction_1	7	347	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTTTTCCTTTTAAAAATA	NA	False	NA	13	True	NA	NA	NA	156330325	156332060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr4_+_156330424_156331133_156331221_156331475
ENSMUSG00000095595.3_55171254_55185800_1	chr12	+	833	5	FSM	ENSMUSG00000095595.3	ENSMUST00000177768.3	3922	5	0	3089	0	-3089	multi-exon	FALSE	canonical	3	88	junction_4	12.794041581924	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCCAATCAGGAGCTTT	NA	False	NA	NA	False	TATAAA	-16	NA	55171253	55185800	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_55171508_55177400_55177575_55182452_55182520_55183902_55184001_55185560
ENSMUSG00000095595.3_55171254_55186379_1	chr12	+	1412	5	FSM	ENSMUSG00000095595.3	ENSMUST00000177768.3	3922	5	0	2510	0	-2510	multi-exon	FALSE	canonical	3	88	junction_4	12.794041581924	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGTGGATTTCCTTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	55171253	55186379	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_55171508_55177400_55177575_55182452_55182520_55183902_55184001_55185560
ENSMUSG00000095648.8_175884830_175895215_1	chr2	-	446	5	NNC	ENSMUSG00000095648.8	novel	1749	4	NA	NA	-3597	1263	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_3	46.0027173110459	283	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	175895215	175884829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_175884942_175886096_175886158_175886363_175886491_175891615_175891671_175895124
ENSMUSG00000095648.8_175885147_175895215_1	chr2	-	1284	4	NNC	ENSMUSG00000095648.8	novel	195	3	NA	NA	-3597	946	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_2	52.563189485503	597	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTTCCCATTTCATATA	NA	False	NA	NA	False	NA	NA	NA	175895215	175885146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_175886158_175886363_175886491_175891615_175891671_175895124
ENSMUSG00000095648.8_175885582_175895215_1	chr2	-	849	4	NNC	ENSMUSG00000095648.8	novel	195	3	NA	NA	-3597	511	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_2	52.563189485503	128	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAATTTTCACTTGTTA	NA	False	NA	NA	False	NA	NA	NA	175895215	175885581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_175886158_175886363_175886491_175891615_175891671_175895124
ENSMUSG00000095677.3_6916337_6923233_1	chr17	-	698	5	NNC	ENSMUSG00000095677.3	novel	771	5	NA	NA	-16	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	3388.49327688576	10230	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6923233	6916336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_6916737_6917085_6917164_6917501_6917619_6920709_6920752_6923172
ENSMUSG00000095687.3_8347426_8366620_1	chr17	-	966	9	FSM	ENSMUSG00000095687.3	ENSMUST00000097420.7	1793	9	309	518	-3	-518	multi-exon	FALSE	canonical	0	0	junction_6	240.913852600883	2858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGGCTTTTTCTTGT	NA	False	NA	-4	True	AAAAAG	-11	NA	8366620	8347425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_8347719_8349056_8349132_8350874_8350921_8353735_8353850_8356719_8356791_8360427_8360486_8361349_8361403_8364373_8364435_8366425
ENSMUSG00000095687.3_8347426_8366620_2	chr17	-	959	9	NNC	ENSMUSG00000095687.3	novel	1793	9	NA	NA	-3	-518	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	311.645205923338	2437	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGGCTTTTTCTTGT	NA	False	NA	-4	True	AAAAAG	-11	NA	8366620	8347425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_8347719_8349056_8349125_8350874_8350921_8353735_8353850_8356719_8356791_8360427_8360486_8361349_8361403_8364373_8364435_8366425
ENSMUSG00000095687.3_8347426_8366620_3	chr17	-	855	7	NIC	ENSMUSG00000095687.3	novel	1793	9	NA	NA	-3	-518	combination_of_known_splicesites	FALSE	canonical	3	18	junction_5	269.11810707486	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGGCTTTTTCTTGT	NA	False	NA	-4	True	AAAAAG	-11	NA	8366620	8347425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_8347719_8349056_8349132_8350874_8350921_8353735_8353850_8356719_8356791_8364373_8364435_8366425
ENSMUSG00000095687.3_8347426_8366620_4	chr17	-	1010	10	NNC	ENSMUSG00000095687.3	novel	1793	9	NA	NA	-3	-518	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	333.963441482617	503	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGGCTTTTTCTTGT	NA	False	NA	-4	True	AAAAAG	-11	NA	8366620	8347425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_8347719_8349056_8349132_8349468_8349513_8350874_8350921_8353735_8353850_8356719_8356791_8360427_8360486_8361349_8361403_8364373_8364435_8366425
ENSMUSG00000095698.3_36675081_36679367_1	chrX	+	730	3	NIC	ENSMUSG00000095698.3	novel	685	4	NA	NA	0	91	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	8.5	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	6889	False	NA	NA	False	AATAAA	-16	NA	36675080	36679367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrX_+_36675169_36675331_36675744_36679137
ENSMUSG00000095909.3_66098405_66271971_1	chr13	+	457	4	NNC	ENSMUSG00000095909.3	novel	449	3	NA	NA	-162889	1321	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	50.8002624665136	682	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	66098404	66271971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_66098504_66267450_66267578_66267777_66267839_66271801
ENSMUSG00000095909.3_66261294_66269165_1	chr13	+	408	4	FSM	ENSMUSG00000095909.3	ENSMUST00000238623.2	1525	4	0	1117	0	-1117	multi-exon	FALSE	canonical	3	113	junction_1	62.9620697104393	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTCCTCTCACAGTTG	NA	False	NA	NA	False	NA	NA	NA	66261293	66269165	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_66261375_66267450_66267578_66267777_66267839_66269026
ENSMUSG00000095909.3_66261294_66325951_1	chr13	+	523	5	Fusion	ENSMUSG00000113156.2_ENSMUSG00000095909.3	novel	1525	4	NA	NA	0	37	multi-exon	FALSE	canonical	3	19	junction_4	48.2415795761291	585	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTAGTGTCTATTGTTC	NA	False	NA	NA	False	NA	NA	NA	66261293	66325951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325393_66325840
ENSMUSG00000095909.3_66261294_66328219_1	chr13	+	919	5	Fusion	ENSMUSG00000113156.2_ENSMUSG00000095909.3	novel	1525	4	NA	NA	0	2305	multi-exon	FALSE	canonical	2	4	junction_4	53.204205660831	829	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAAATAAAGTTTCTTC	NA	False	NA	6	True	AATAAA	-24	NA	66261293	66328219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325393_66327712
ENSMUSG00000095941.4_110828073_110838646_1	chr8	+	1473	9	NNC	ENSMUSG00000095941.4	novel	1649	10	NA	NA	234	53	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	7.68114574786861	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACCGATTGTGTGTTTCAG	NA	False	NA	11	True	AATAAA	-18	NA	110828072	110838646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_110828167_110835615_110835754_110836017_110836077_110836409_110836623_110836712_110836955_110837152_110837295_110837438_110837593_110837930_110838005_110838289
ENSMUSG00000095990.2_17284340_17367100_1	chr17	+	2277	6	Fusion	ENSMUSG00000096696.2_ENSMUSG00000095990.2	novel	2667	4	NA	NA	-35	7	multi-exon	TRUE	non_canonical	0	0	junction_4	109.232595867717	2141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17284339	17367100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr17_+_17284469_17362997_17363125_17363366_17363428_17364720_17366130_17366465_17366734_17366817
ENSMUSG00000095990.2_17341677_17367100_1	chr17	+	2271	6	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	117.263122933001	2038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17341676	17367100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720_17366130_17366465_17366734_17366817
ENSMUSG00000096145.3_127492235_127494626_1	chr7	-	585	3	FSM	ENSMUSG00000096145.3	ENSMUST00000033074.8	748	3	163	0	-145	0	multi-exon	FALSE	canonical	3	262	junction_2	18.5	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTAGCATATGTCTGCC	NA	False	NA	-11	True	AATAAA	-19	NA	127494626	127492234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127492664_127493676_127493787_127494580
ENSMUSG00000096145.3_127492235_127494789_1	chr7	-	742	3	NNC	ENSMUSG00000096145.3	novel	748	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	131	4825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTAGCATATGTCTGCC	NA	False	NA	-11	True	AATAAA	-19	NA	127494789	127492234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_127492654_127493672_127493787_127494580
ENSMUSG00000096175.4_120373631_120375032_1	chr13	-	853	2	NNC	ENSMUSG00000096175.4	novel	1374	3	NA	NA	-744	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	141	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTTTGTTTATTTGTT	NA	False	NA	-63	True	NA	NA	NA	120375032	120373630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_120374317_120374865
ENSMUSG00000096175.4_120373631_120375032_2	chr13	-	872	2	ISM	ENSMUSG00000096175.4	ENSMUST00000187530.3	1374	3	15776	0	-744	0	3prime_fragment	FALSE	canonical	1	1	junction_1	0	138	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTTTGTTTATTTGTT	NA	False	NA	-63	True	NA	NA	NA	120375032	120373630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_120374317_120374846
ENSMUSG00000096199.3_4284027_4286698_1	chr12	+	588	2	FSM	ENSMUSG00000096199.3	ENSMUST00000179139.3	3840	2	0	3252	0	-3252	multi-exon	FALSE	canonical	3	212	junction_1	0	1708	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTACTACTATCATCATTAT	NA	False	NA	NA	False	ATTAAA	-18	NA	4284026	4286698	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_4284279_4286362
ENSMUSG00000096215.9_4825152_4826173_1	chr16	+	370	4	NIC	ENSMUSG00000096215.9	novel	382	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	19.6694913225759	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGTCTGGACTGTGTT	NA	False	NA	11	True	NA	NA	NA	4825151	4826173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_4825190_4825607_4825753_4825835_4825919_4826069
ENSMUSG00000096299.4_149467588_149484039_1	chr6	+	444	3	FSM	ENSMUSG00000096299.4	ENSMUST00000203729.3	1352	3	-42	950	0	-950	multi-exon	FALSE	canonical	3	8	junction_1	5.5	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGGTGTCTGATTTGTG	NA	False	NA	NA	False	NA	NA	NA	149467587	149484039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_149467693_149483509_149483637_149483827
ENSMUSG00000096299.4_149467588_149485247_2	chr6	+	489	4	NIC	ENSMUSG00000096299.4	novel	291	3	NA	NA	0	93	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	4.54606056566195	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTACAAATGCAATCTATG	NA	False	NA	NA	False	NA	NA	NA	149467587	149485247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_149467693_149483509_149483637_149483827_149483889_149485051
ENSMUSG00000096299.4_149467630_149485163_1	chr6	+	363	4	NIC	ENSMUSG00000096299.4	novel	291	3	NA	NA	0	9	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	4.54606056566195	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTATGAAGGTATTCAATA	NA	False	NA	NA	False	NA	NA	NA	149467629	149485163	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_149467693_149483509_149483637_149483827_149483889_149485051
ENSMUSG00000096393.2_110743464_110756619_1	chr9	-	872	3	NNC	ENSMUSG00000096393.2	novel	499	3	NA	NA	-10690	343	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0.5	46	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTCGTTTGCTAGTCCA	NA	False	NA	NA	False	AATAAA	-23	NA	110756619	110743463	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_110744095_110745519_110745666_110756524
ENSMUSG00000096401.3_20697888_20727060_1	chr8	+	1211	6	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-97	-206	multi-exon	FALSE	non_canonical	0	0	junction_5	443.975224533982	632	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGATGTCTTTTTCTTTCA	NA	False	NA	NA	False	AATAAA	-14	NA	20697887	20727060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717497_20721120_20721241_20723149_20723318_20726844
ENSMUSG00000096401.3_20697888_20727554_1	chr8	+	1343	4	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-97	288	multi-exon	FALSE	canonical	3	112	junction_3	241.687125570781	1235	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGGGCATTCAAAGTTAG	NA	False	NA	NA	False	AATAAA	-12	NA	20697887	20727554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr8_+_20698090_20711891_20712265_20717197_20717493_20727081
ENSMUSG00000096472.3_21199762_21202604_1	chr9	-	1111	3	FSM	ENSMUSG00000096472.3	ENSMUST00000213407.2	691	3	99	-519	0	0	multi-exon	FALSE	canonical	3	31	junction_2	102.5	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAATTGTTTTGTGTGA	NA	False	NA	NA	False	TATAAA	-18	NA	21202604	21199761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21200629_21202104_21202262_21202517
ENSMUSG00000096574.8_19114974_19137146_1	chr14	-	1971	7	NNC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.46249406456535	1008	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19137146	19114973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19132241_19132393_19135569_19135684_19137061
ENSMUSG00000096574.8_19114974_19137146_2	chr14	-	1706	5	NIC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	1.6393596310755	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19137146	19114973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19137061
ENSMUSG00000096696.2_17284375_17309890_1	chr17	+	2246	6	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	105.978110947497	1193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGATGCAACATAGTTT	NA	False	NA	NA	False	NA	NA	NA	17284374	17309890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17308915_17309250_17309552_17309636
ENSMUSG00000096696.2_17284375_17309890_2	chr17	+	2415	5	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	95.1955224787385	1169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGATGCAACATAGTTT	NA	False	NA	NA	False	NA	NA	NA	17284374	17309890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17308923_17309174
ENSMUSG00000096696.2_17284375_17309890_3	chr17	+	2416	5	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	95.1955224787385	882	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGATGCAACATAGTTT	NA	False	NA	NA	False	NA	NA	NA	17284374	17309890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17308902_17309152
ENSMUSG00000096696.2_17284375_17309890_4	chr17	+	2247	6	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	105.978110947497	1282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGATGCAACATAGTTT	NA	False	NA	NA	False	NA	NA	NA	17284374	17309890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17308915_17309250_17309519_17309602
ENSMUSG00000096727.4_34401004_34406313_1	chr17	-	884	6	FSM	ENSMUSG00000096727.4	ENSMUST00000174576.4	1352	6	425	43	-1	0	multi-exon	FALSE	canonical	2	4	junction_1	3.70944739819828	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAGTTGCAAATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	34406313	34401003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34401326_34402062_34402205_34402588_34402719_34403255_34403388_34404703_34404772_34406223
ENSMUSG00000096768.9_90797117_90827734_1	chrY	+	249	2	NIC	ENSMUSG00000096768.9	novel	567	3	NA	NA	0	0	intron_retention	FALSE	canonical	2	80	junction_1	0	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGATGTGTGTGTGTC	5062	False	NA	NA	False	AATAAA	-18	NA	90797116	90827734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chrY_+_90797249_90827617
ENSMUSG00000096768.9_90797117_90833671_1	chrY	+	371	3	NNC	ENSMUSG00000096768.9	novel	567	3	NA	NA	0	5937	intron_retention	FALSE	canonical	3	607	junction_1	705	437	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGATGTGTGTGTGTC	5062	False	NA	NA	False	AATAAA	-18	NA	90797116	90833671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrY_+_90797249_90804564_90804687_90833554
ENSMUSG00000096768.9_90797117_90833671_2	chrY	+	389	3	NNC	ENSMUSG00000096768.9	novel	567	3	NA	NA	0	5937	intron_retention	FALSE	non_canonical	0	0	junction_1	1008.5	468	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGATGTGTGTGTGTC	5062	False	NA	NA	False	AATAAA	-18	NA	90797116	90833671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrY_+_90797249_90804546_90804687_90833554
ENSMUSG00000096780.8_6705923_6713451_1	chr17	-	809	7	NNC	ENSMUSG00000096780.8	novel	2426	9	NA	NA	3043	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	418.960883880849	161	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGACTTTTTGTTGCTGTG	NA	False	NA	2	True	AATAAA	-23	NA	6713451	6705922	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_6706243_6709602_6709670_6709910_6710001_6710938_6711030_6712710_6712763_6713169_6713273_6713365
ENSMUSG00000096780.8_6708458_6713432_1	chr17	-	890	7	NNC	ENSMUSG00000096780.8	novel	1859	9	NA	NA	3062	125	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	406.231871390384	71	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTGAGTCTGTGGGAGG	NA	False	NA	NA	False	AATAAA	-35	NA	6713432	6708457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_6708878_6709602_6709670_6709910_6710001_6710938_6711030_6712710_6712763_6713169_6713273_6713365
ENSMUSG00000096780.8_6708458_6744541_1	chr17	-	1989	17	NNC	ENSMUSG00000096780.8	novel	1413	17	NA	NA	-10120	125	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	290.843486421391	670	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTGAGTCTGTGGGAGG	2348	False	NA	NA	False	AATAAA	-35	NA	6744541	6708457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_6708878_6709602_6709670_6709910_6710001_6710938_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836_6717034_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
ENSMUSG00000096780.8_6723808_6744541_2	chr17	-	1071	6	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10120	-15007	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	282.126638231841	2494	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCGTGTTTCTTTTCCCC	2348	False	NA	NA	False	AATAAA	-15	NA	6744541	6723807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_6723893_6723915_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
ENSMUSG00000096780.8_6723929_6743921_1	chr17	-	1056	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-9500	-15128	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	312.644666514559	793	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTGTTTATCGTTTGTA	2968	False	NA	NA	False	NA	NA	NA	6743921	6723928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6743712
ENSMUSG00000096780.8_6723929_6744541_1	chr17	-	636	6	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10120	-15128	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	282.126638231841	681	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTGTTTATCGTTTGTA	2348	False	NA	NA	False	NA	NA	NA	6744541	6723928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_6724065_6724401_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
ENSMUSG00000096780.8_6723929_6744541_2	chr17	-	967	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10120	-15128	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	272.69075891933	1634	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTGTTTATCGTTTGTA	2348	False	NA	NA	False	NA	NA	NA	6744541	6723928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_6724528_6725999_6726082_6728054_6728111_6734317_6734422_6744415
ENSMUSG00000096780.8_6723929_6744541_3	chr17	-	970	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10120	-15128	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	308.284264113496	1585	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTGTTTATCGTTTGTA	2348	False	NA	NA	False	NA	NA	NA	6744541	6723928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_6724528_6725999_6726088_6728054_6728104_6734313_6734422_6744415
ENSMUSG00000096788.9_36712127_36723468_2	chrX	+	745	5	NNC	ENSMUSG00000096788.9	novel	735	5	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	31.4523449046331	361	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTTGTGCTTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	36712126	36723468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_+_36712216_36712377_36712790_36720942_36720989_36721255_36721305_36723319
ENSMUSG00000096910.3_33508518_33523643_1	chr17	+	3216	4	FSM	ENSMUSG00000096910.3	ENSMUST00000099414.5	5788	4	0	2572	0	502	multi-exon	FALSE	canonical	3	48	junction_3	21.7613316585993	393	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGTCGATCCTAGAATCT	NA	False	NA	6	True	AATAAA	-25	NA	33508517	33523643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_33508644_33519554_33519682_33519918_33519977_33520738
ENSMUSG00000096916.8_27689852_27713581_1	chr7	-	626	6	NNC	ENSMUSG00000096916.8	novel	6163	6	NA	NA	-41	-1715	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_5	28.6454184818445	83	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTGAACTCAAGGGCTCC	NA	False	NA	NA	False	TATAAA	-36	NA	27713581	27689851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_27689948_27704643_27704743_27706738_27706866_27707808_27707862_27711760_27711876_27713445
ENSMUSG00000096917.3_57941088_57959765_1	chr8	+	472	3	FSM	ENSMUSG00000096917.3	ENSMUST00000180690.2	2618	3	0	2146	0	0	multi-exon	FALSE	canonical	3	58	junction_1	45.5	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTCCTGCTTCTTTCAA	NA	False	NA	9	True	NA	NA	NA	57941087	57959765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_57941228_57943373_57943502_57959561
ENSMUSG00000096917.3_57942660_57959765_1	chr8	+	489	3	NNC	ENSMUSG00000096917.3	novel	2618	3	NA	NA	1572	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	62	374	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTCCTGCTTCTTTCAA	NA	False	NA	9	True	NA	NA	NA	57942659	57959765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_57942817_57943373_57943502_57959561
ENSMUSG00000096917.3_57958849_57963296_1	chr8	+	635	3	NNC	ENSMUSG00000096917.3	novel	298	2	NA	NA	0	1385	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	3	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCAGTCTATTGGTTTTG	NA	False	NA	14	True	NA	NA	NA	57958848	57963296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_57958943_57959561_57959836_57963029
ENSMUSG00000096917.3_57958849_57963296_2	chr8	+	543	3	NNC	ENSMUSG00000096917.3	novel	298	2	NA	NA	0	1385	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	11	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCAGTCTATTGGTTTTG	NA	False	NA	14	True	NA	NA	NA	57958848	57963296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_57958943_57959561_57959836_57963121
ENSMUSG00000096917.3_57958849_57963296_3	chr8	+	659	3	NNC	ENSMUSG00000096917.3	novel	298	2	NA	NA	0	1385	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	5	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCAGTCTATTGGTTTTG	NA	False	NA	14	True	NA	NA	NA	57958848	57963296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_57958967_57959561_57959836_57963029
ENSMUSG00000096956.3_32241744_32244808_1	chr15	-	453	2	FSM	ENSMUSG00000096956.3	ENSMUST00000181536.3	1486	2	0	1033	0	-1033	multi-exon	FALSE	canonical	2	7	junction_1	0	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGCTGGCCTCTTTACA	3844	False	NA	NA	False	AAGAAA	-8	NA	32244808	32241743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_32241916_32244527
ENSMUSG00000096968.2_170701562_170713026_1	chr1	+	1486	6	Genic_Genomic	ENSMUSG00000053925.5_ENSMUSG00000096968.2	novel	1671	2	NA	NA	5348	-424	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1365	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGACTGACTCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	170701561	170713026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708598_170712635
ENSMUSG00000096968.2_170701757_170713026_1	chr1	+	1291	6	Genic_Genomic	ENSMUSG00000053925.5_ENSMUSG00000096968.2	novel	1671	2	NA	NA	5543	-424	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1289	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGACTGACTCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	170701756	170713026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708598_170712635
ENSMUSG00000096968.2_170701757_170713026_2	chr1	+	1304	6	Genic_Genomic	ENSMUSG00000053925.5_ENSMUSG00000096968.2	novel	1671	2	NA	NA	5543	-424	multi-exon	FALSE	non_canonical	0	0	junction_1	0	868	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGACTGACTCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	170701756	170713026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708611_170712635
ENSMUSG00000096981.3_21983542_21996723_1	chr9	+	1487	8	Genic_Genomic	ENSMUSG00000096981.3	novel	567	4	NA	NA	1214	247	multi-exon	FALSE	non_canonical	0	0	junction_1	0	437	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTACGAGTCGAAGGTGAC	NA	False	NA	NA	False	NA	NA	NA	21983541	21996723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21996644
ENSMUSG00000096981.3_21983542_21996723_2	chr9	+	1555	8	Genic_Genomic	ENSMUSG00000096981.3	novel	567	4	NA	NA	1214	247	multi-exon	FALSE	non_canonical	0	0	junction_1	0	622	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTACGAGTCGAAGGTGAC	NA	False	NA	NA	False	NA	NA	NA	21983541	21996723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21995318_21995505_21996644
ENSMUSG00000096981.3_21983542_21996723_3	chr9	+	1665	9	Genic_Genomic	ENSMUSG00000096981.3	novel	567	4	NA	NA	1214	247	multi-exon	FALSE	non_canonical	0	0	junction_1	0	991	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTACGAGTCGAAGGTGAC	NA	False	NA	NA	False	NA	NA	NA	21983541	21996723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995505_21996652
ENSMUSG00000096993.4_36690455_36708597_1	chr9	+	2084	11	Genic_Genomic	ENSMUSG00000096993.4	novel	608	4	NA	NA	11272	14624	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1055	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCGCTCGGAGAGCCGGGG	NA	False	NA	NA	False	NA	NA	NA	36690454	36708597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_36691566_36693636_36693712_36694028_36694141_36695763_36695876_36696828_36696949_36697231_36697357_36697778_36697846_36699488_36699550_36701075_36701222_36704535_36704646_36708552
ENSMUSG00000097004.2_89253835_89257296_1	chr3	+	1063	6	NIC	ENSMUSG00000097004.2	novel	2820	2	NA	NA	8678	2158	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCCCGCCCCGCCCCGTC	7389	False	NA	NA	False	NA	NA	NA	89253834	89257296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ENSMUSG00000097039.9_61909878_62121376_1	chr15	+	1313	7	NIC	ENSMUSG00000097039.9	novel	1563	9	NA	NA	-9	-1	combination_of_known_splicesites	FALSE	canonical	3	16	junction_2	6.0736223860962	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGAAGTCATGATTGTC	NA	False	NA	26	True	AATAAA	-34	NA	61909877	62121376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_61910051_61978996_61979315_62021087_62021202_62047315_62047398_62114022_62114151_62114282_62114411_62121006
ENSMUSG00000097048.8_86503253_86541431_1	chr6	+	570	5	NNC	ENSMUSG00000097048.8	novel	2099	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	46.0129057982649	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGTATTTTTAAATTTA	NA	False	NA	9	True	NA	NA	NA	86503252	86541431	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_86503344_86504872_86504957_86509174_86509290_86540413_86540520_86541257
ENSMUSG00000097055.3_21468865_21469816_1	chr12	+	742	2	NNC	ENSMUSG00000097055.3	novel	1729	2	NA	NA	923	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGGAAAATGA	NA	False	NA	NA	False	ACTAAA	-44	NA	21468864	21469816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_21469483_21469692
ENSMUSG00000097057.2_77843198_77854722_1	chr15	+	1832	15	NIC	ENSMUSG00000097057.2	novel	4343	2	NA	NA	-2676	3396	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3241	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCGTGCCTGGGACCACC	2924	False	NA	NA	False	NA	NA	NA	77843197	77854722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854658
ENSMUSG00000097057.2_77843198_77855013_1	chr15	+	1892	15	NNC	ENSMUSG00000097057.2	novel	4343	2	NA	NA	-2676	3687	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4573	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGCTGTCGTAAATGGCCC	2924	False	NA	NA	False	NA	NA	NA	77843197	77855013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852783_77854882
ENSMUSG00000097076.2_84382208_84390216_1	chr10	-	847	4	NNC	ENSMUSG00000097076.2	novel	1334	4	NA	NA	-1014	1073	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	10.8012344973464	78	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATAGGCGTTTTTGACTG	8445	False	NA	-3	True	AATAAA	-18	NA	84390216	84382207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_84382384_84383922_84384062_84385083_84385495_84390095
ENSMUSG00000097091.2_11269795_11277251_1	chr19	+	965	3	NNC	ENSMUSG00000097091.2	novel	1022	3	NA	NA	95614	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	0.5	309	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTAGTTGTTTTGGTTCCA	NA	False	NA	NA	False	NA	NA	NA	11269794	11277251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_11269885_11270003_11270177_11276549
ENSMUSG00000097099.3_107431937_107439462_1	chr9	-	1572	5	NIC	ENSMUSG00000097099.3	novel	5192	2	NA	NA	4524	4071	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAACCACCGCCTCGGGCG	NA	False	NA	NA	False	NA	NA	NA	107439462	107431936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_107432125_107434651_107434757_107434968_107435267_107435385_107435502_107438597
ENSMUSG00000097129.3_62265119_62285468_1	chr10	+	2424	15	Genic_Genomic	ENSMUSG00000097129.3	novel	1834	1	NA	NA	-20149	-1633	multi-exon	FALSE	non_canonical	0	0	junction_1	0	279	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCGGCTCGAATGGAGCC	NA	False	NA	NA	False	NA	NA	NA	62265118	62285468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_62265614_62266249_62266399_62268067_62268245_62268830_62268912_62270173_62270394_62271237_62271332_62271424_62271606_62273212_62273305_62274752_62274831_62276913_62277026_62279173_62279343_62280817_62280933_62282802_62282911_62283474_62283553_62285193
ENSMUSG00000097167.2_95111050_95125069_1	chr3	+	720	5	NIC	ENSMUSG00000097167.2	novel	956	4	NA	NA	-13718	-8900	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	58	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACCCGGAAGTGAAGGCGC	-1	True	NA	NA	False	AATAAA	-6	NA	95111049	95125069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_95111237_95111951_95112120_95113773_95113914_95123524_95123580_95124899
ENSMUSG00000097167.2_95124768_95126858_1	chr3	+	711	2	ISM	ENSMUSG00000097167.2	ENSMUST00000181819.2	956	4	0	7111	0	-7111	5prime_fragment	FALSE	canonical	3	12	junction_1	0	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTGCGATGTTTTTCCTCA	246	False	NA	NA	False	ATTAAA	-17	NA	95124767	95126858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_95125370_95126749
ENSMUSG00000097167.2_95124768_95127118_1	chr3	+	971	2	ISM	ENSMUSG00000097167.2	ENSMUST00000181819.2	956	4	0	6851	0	-6851	5prime_fragment	FALSE	canonical	3	12	junction_1	0	101	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTGGTCTCCCATTTTGC	246	False	NA	NA	False	ATTAAA	-20	NA	95124767	95127118	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_95125370_95126749
ENSMUSG00000097167.2_95125296_95131236_1	chr3	+	484	4	NNC	ENSMUSG00000097167.2	novel	956	4	NA	NA	528	-2733	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	4.96655480858378	50	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTGTACGTGTGTGTA	774	False	NA	NA	False	NA	NA	NA	95125295	95131236	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_95125370_95126749_95126861_95129089_95129197_95131044
ENSMUSG00000097180.6_24055595_24059050_1	chr5	+	389	4	FSM	ENSMUSG00000097180.6	ENSMUST00000181574.6	1375	4	0	986	0	-986	multi-exon	FALSE	canonical	0	0	junction_3	11.0453610171873	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCATTTGTTCTTCATTCC	NA	False	NA	NA	False	NA	NA	NA	24055594	24059050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_24055620_24057118_24057154_24057715_24057759_24058764
ENSMUSG00000097184.3_29827818_29838240_1	chr16	+	492	3	NNC	ENSMUSG00000097184.3	novel	2428	3	NA	NA	333	-2008	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_2	1	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTCTTGAGTGCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	29827817	29838240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_29827954_29835374_29835462_29837971
ENSMUSG00000097187.2_84572513_84573553_1	chr2	-	623	2	NNC	ENSMUSG00000097187.2	novel	726	2	NA	NA	446	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACTCTCCTGCTTCCTGA	NA	False	NA	NA	False	AATAAA	-21	NA	84573553	84572512	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_84573045_84573462
ENSMUSG00000097187.2_84572513_84574100_1	chr2	-	827	2	FSM	ENSMUSG00000097187.2	ENSMUST00000181711.2	726	2	-101	0	-101	0	multi-exon	FALSE	canonical	3	6	junction_1	0	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACTCTCCTGCTTCCTGA	NA	False	NA	NA	False	AATAAA	-21	NA	84574100	84572512	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84573045_84573805
ENSMUSG00000097195.11_88403105_88404941_1	chr9	-	669	5	NNC	ENSMUSG00000097195.11	novel	939	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	469.34069448536	1459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_88403496_88403966_88404029_88404359_88404435_88404536_88404640_88404903
ENSMUSG00000097195.11_88403105_88404941_2	chr9	-	732	6	NNC	ENSMUSG00000097195.11	novel	826	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	437.46789596495	4472	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_88403496_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404640_88404903
ENSMUSG00000097195.11_88403105_88404941_3	chr9	-	664	5	NNC	ENSMUSG00000097195.11	novel	939	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_4	474.860176788915	2073	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536_88404633_88404903
ENSMUSG00000097195.11_88403105_88404941_4	chr9	-	671	5	NIC	ENSMUSG00000097195.11	novel	939	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	461	junction_1	309.579553588411	3635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536_88404640_88404903
ENSMUSG00000097195.11_88403105_88404941_5	chr9	-	1266	3	NIC	ENSMUSG00000097195.11	novel	1534	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	461	junction_1	364.5	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_88403502_88403970_88404435_88404536
ENSMUSG00000097195.11_88403105_88404941_6	chr9	-	935	4	NIC	ENSMUSG00000097195.11	novel	809	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	461	junction_1	319.66545011934	2878	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536
ENSMUSG00000097239.8_101297490_101308232_1	chr11	-	1482	12	FSM	ENSMUSG00000075528.14	ENSMUST00000070395.9	1516	12	209	-175	0	175	multi-exon	FALSE	canonical	3	448	junction_11	68.1448384565145	3132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTGTGGTATAGTTGCTT	NA	False	NA	-1	True	ATTAAA	-40	NA	101308232	101297489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_101297851_101298956_101299052_101300478_101300534_101300939_101301032_101301179_101301247_101301586_101301718_101301908_101302026_101302119_101302277_101302765_101302824_101304762_101304923_101307928_101308061_101308175
ENSMUSG00000097248.10_88199440_88252182_1	chr8	+	587	5	NIC	ENSMUSG00000097248.10	novel	682	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_1	79.1023861839831	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	198	False	NA	7	True	AATAAA	-15	NA	88199439	88252182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_88199589_88240436_88240525_88248363_88248442_88250923_88251056_88252042
ENSMUSG00000097248.10_88199744_88230600_1	chr8	+	1126	2	NIC	ENSMUSG00000097248.10	novel	1303	2	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATTTTGTGCAGGATGT	209	False	NA	NA	False	AATAAA	-16	NA	88199743	88230600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_88199859_88229589
ENSMUSG00000097248.10_88199744_88252182_1	chr8	+	553	5	NIC	ENSMUSG00000097248.10	novel	432	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	86.1434124004848	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	209	False	NA	7	True	AATAAA	-15	NA	88199743	88252182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_88199859_88240436_88240525_88248363_88248442_88250923_88251056_88252042
ENSMUSG00000097253.3_128333963_128339884_1	chr6	+	1653	4	NIC	ENSMUSG00000097253.3	novel	2237	2	NA	NA	996	4084	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	669	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGCTCCGTCACGTGACCG	NA	False	NA	NA	False	NA	NA	NA	128333962	128339884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_128335157_128336068_128336318_128339020_128339148_128339801
ENSMUSG00000097253.3_128334328_128339831_1	chr6	+	1235	4	NIC	ENSMUSG00000097253.3	novel	2237	2	NA	NA	1361	4031	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	311	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACACCGAGCGTTCGGGG	NA	False	NA	NA	False	NA	NA	NA	128334327	128339831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_128335157_128336068_128336318_128339020_128339148_128339801
ENSMUSG00000097277.8_81173319_81181250_1	chr7	+	835	5	NIC	ENSMUSG00000097277.8	novel	725	4	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	2	4	junction_3	35.5457451743524	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGGGTATTATGTTTT	NA	False	NA	12	True	AATAAA	-17	NA	81173318	81181250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_81173425_81178534_81178689_81178904_81179007_81179094_81179276_81180958
ENSMUSG00000097279.2_8848147_8863540_1	chr5	-	1370	6	NIC	ENSMUSG00000097279.2	novel	1334	3	NA	NA	-15017	-24570	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGGCTTCCTCGGGCCCC	NA	False	NA	NA	False	NA	NA	NA	8863540	8848146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8860557_8860616_8862654
ENSMUSG00000097290.10_21613112_21627790_1	chr16	+	921	6	NIC	ENSMUSG00000097290.10	novel	701	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_4	51.1921869038626	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGTTGAAAGGTCCATG	NA	False	NA	30	True	AATAAA	-35	NA	21613111	21627790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_21613197_21614599_21614726_21619464_21619587_21620030_21620107_21625720_21625870_21627427
ENSMUSG00000097313.3_29757629_29765396_1	chr16	-	382	2	ISM	ENSMUSG00000097313.3	ENSMUST00000232297.2	699	4	-62	31287	-61	5569	5prime_fragment	FALSE	canonical	3	93	junction_1	0	481	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAGCGGTGTGGTATTTA	NA	False	NA	NA	False	TATAAA	-13	NA	29765396	29757628	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_29757886_29765271
ENSMUSG00000097313.3_29757629_29765572_1	chr16	-	558	2	ISM	ENSMUSG00000097313.3	ENSMUST00000232297.2	699	4	-238	31287	0	5569	5prime_fragment	FALSE	canonical	3	93	junction_1	0	578	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAGCGGTGTGGTATTTA	NA	False	NA	NA	False	TATAAA	-13	NA	29765572	29757628	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_29757886_29765271
ENSMUSG00000097318.3_33193637_33201097_1	chr16	-	738	3	NNC	ENSMUSG00000097318.3	novel	737	2	NA	NA	0	6587	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	16.5	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGGAGAACAGGCTTGCC	NA	False	NA	NA	False	NA	NA	NA	33201097	33193636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_33194022_33200608_33200750_33200885
ENSMUSG00000097318.3_33193637_33201097_2	chr16	-	717	3	NNC	ENSMUSG00000097318.3	novel	737	2	NA	NA	0	6587	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	4	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGGAGAACAGGCTTGCC	NA	False	NA	NA	False	NA	NA	NA	33201097	33193636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_33194022_33200608_33200729_33200885
ENSMUSG00000097326.3_48425889_48427360_1	chr13	-	763	3	NNC	ENSMUSG00000097326.3	novel	672	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	6	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTTGTATGTGTGATA	NA	False	NA	1	True	ATTAAA	-15	NA	48427360	48425888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_48426292_48426385_48426624_48427238
ENSMUSG00000097327.8_21993565_22024732_1	chr10	-	536	2	FSM	ENSMUSG00000097327.8	ENSMUST00000181677.2	617	2	-223	304	-10	-304	multi-exon	FALSE	canonical	3	6	junction_1	0	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTCTTGGTCTCAAAT	NA	False	NA	NA	False	NA	NA	NA	22024732	21993564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_21993756_22024387
ENSMUSG00000097333.8_67657617_67674270_1	chr13	-	665	4	NNC	ENSMUSG00000097333.8	novel	382	2	NA	NA	-5	6283	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	21.1187120819429	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAGATGAATGTATGGACT	9248	False	NA	NA	False	AATAAA	-21	NA	67674270	67657616	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_67657984_67668744_67668841_67669311_67669439_67674195
ENSMUSG00000097360.9_67701353_67709355_1	chr13	+	382	3	NNC	ENSMUSG00000097360.9	novel	1084	4	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	3.5	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGTAGTTCAGTAGCACA	NA	False	NA	NA	False	ATTAAA	-18	NA	67701352	67709355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_67701473_67701692_67701749_67709149
ENSMUSG00000097379.3_17594571_17614230_1	chr17	-	2289	10	NIC	ENSMUSG00000097379.3	novel	2529	5	NA	NA	18025	15634	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1504	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGATTGGAATTAAGGCCG	NA	False	NA	NA	False	NA	NA	NA	17614230	17594570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613716
ENSMUSG00000097379.3_17594834_17613996_1	chr17	-	1792	10	NIC	ENSMUSG00000097379.3	novel	2529	5	NA	NA	18259	15371	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	469	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCAAAGTTGCTGGGT	NA	False	NA	NA	False	NA	NA	NA	17613996	17594833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613716
ENSMUSG00000097379.3_17594834_17614230_1	chr17	-	2026	10	NIC	ENSMUSG00000097379.3	novel	2529	5	NA	NA	18025	15371	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1420	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCAAAGTTGCTGGGT	NA	False	NA	NA	False	NA	NA	NA	17614230	17594833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613716
ENSMUSG00000097391.9_109714557_109715892_1	chr12	+	535	2	FSM	ENSMUSG00000097391.9	ENSMUST00000182300.2	694	2	159	0	159	0	multi-exon	FALSE	canonical	3	58	junction_1	0	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTTGCGTGTCTGTATT	4948	False	NA	21	True	AATAAA	-21	NA	109714556	109715892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_109714728_109715528
ENSMUSG00000097397.3_4756986_4758883_1	chr16	-	1257	3	NIC	ENSMUSG00000097397.3	novel	1694	3	NA	NA	-1386	-4073	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1673	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCCCAAACGAGCATGCG	NA	False	NA	NA	False	NA	NA	NA	4758883	4756985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_4757158_4757241_4757503_4758059
ENSMUSG00000097397.3_4756986_4758883_2	chr16	-	1249	3	NNC	ENSMUSG00000097397.3	novel	1694	3	NA	NA	-1386	-4073	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1550	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCCCAAACGAGCATGCG	NA	False	NA	NA	False	NA	NA	NA	4758883	4756985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_4757158_4757241_4757495_4758059
ENSMUSG00000097398.3_88682676_88683458_2	chr1	+	540	2	NIC	ENSMUSG00000097398.3	novel	479	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	14	junction_1	0	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTGGTCTTGGCTCCTT	NA	False	NA	17	True	NA	NA	NA	88682675	88683458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_88683013_88683255
ENSMUSG00000097398.3_88682676_88683458_3	chr1	+	301	2	NIC	ENSMUSG00000097398.3	novel	358	3	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	49	junction_1	0	1360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTGGTCTTGGCTCCTT	NA	False	NA	17	True	NA	NA	NA	88682675	88683458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_88682774_88683255
ENSMUSG00000097411.3_118516800_118523296_1	chr13	+	944	5	Genic_Genomic	ENSMUSG00000097411.3	novel	1494	1	NA	NA	-6366	-1363	multi-exon	FALSE	non_canonical	0	0	junction_1	0	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGCGGGGCCGGCGGCGCC	NA	False	NA	NA	False	NA	NA	NA	118516799	118523296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_118517206_118519411_118519589_118521102_118521209_118521769_118521916_118523187
ENSMUSG00000097412.3_86521475_86524591_1	chr10	+	438	3	FSM	ENSMUSG00000097412.3	ENSMUST00000220419.2	1665	3	0	1227	0	98	multi-exon	FALSE	canonical	3	53	junction_1	104.5	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGGGGGCTCAATGGCTC	NA	False	NA	NA	False	AGTAAA	-22	NA	86521474	86524591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_86521602_86521743_86521861_86524397
ENSMUSG00000097412.3_86521475_86524760_1	chr10	+	607	3	FSM	ENSMUSG00000097412.3	ENSMUST00000220419.2	1665	3	0	1058	0	267	multi-exon	FALSE	canonical	3	53	junction_1	104.5	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAGTCTTACTATACATTC	NA	False	NA	NA	False	NA	NA	NA	86521474	86524760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_86521602_86521743_86521861_86524397
ENSMUSG00000097412.3_86526704_86541326_1	chr10	+	2784	18	Genic_Genomic	ENSMUSG00000097412.3	novel	323	4	NA	NA	4951	10656	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCGCGCGCAGGTCGGG	NA	False	NA	NA	False	NA	NA	NA	86526703	86541326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_86526993_86527492_86527613_86527997_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
ENSMUSG00000097412.3_86526704_86541326_2	chr10	+	2768	18	Genic_Genomic	ENSMUSG00000097412.3	novel	323	4	NA	NA	4951	10656	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2483	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCGCGCGCAGGTCGGG	NA	False	NA	NA	False	NA	NA	NA	86526703	86541326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540251_86541170
ENSMUSG00000097412.3_86526704_86541326_3	chr10	+	2772	18	Genic_Genomic	ENSMUSG00000097412.3	novel	323	4	NA	NA	4951	10656	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3412	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCGCGCGCAGGTCGGG	NA	False	NA	NA	False	NA	NA	NA	86526703	86541326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_86526993_86527492_86527607_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
ENSMUSG00000097412.3_86526704_86541326_4	chr10	+	2778	18	Genic_Genomic	ENSMUSG00000097412.3	novel	323	4	NA	NA	4951	10656	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5933	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCGCGCGCAGGTCGGG	NA	False	NA	NA	False	NA	NA	NA	86526703	86541326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
ENSMUSG00000097414.3_98710678_98729220_1	chr15	+	1765	12	NNC	ENSMUSG00000097414.3	novel	2224	3	NA	NA	-531	15262	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2189	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGCGCCAAGCCGGGCCG	2441	False	NA	NA	False	NA	NA	NA	98710677	98729220	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98729015
ENSMUSG00000097415.3_75429837_75431847_1	chr7	-	716	2	ISM	ENSMUSG00000097415.3	ENSMUST00000181224.2	656	3	0	10327	0	-10327	5prime_fragment	FALSE	canonical	3	32	junction_1	0	187	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAATCCTCACCTCCACCC	NA	False	NA	NA	False	NA	NA	NA	75431847	75429836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_75430505_75431799
ENSMUSG00000097415.3_75430373_75431847_1	chr7	-	180	2	ISM	ENSMUSG00000097415.3	ENSMUST00000181224.2	656	3	0	10863	0	-10863	5prime_fragment	FALSE	canonical	3	32	junction_1	0	89	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTCATTGCTTTCCTTA	NA	False	NA	NA	False	AAGAAA	-34	NA	75431847	75430372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_75430505_75431799
ENSMUSG00000097419.2_144944884_144994538_1	chr6	+	2510	11	Genic_Genomic	ENSMUSG00000097419.2	novel	2461	2	NA	NA	-48401	-1618	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1524	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATAGAGGGCTCAGGAGCA	NA	False	NA	NA	False	NA	NA	NA	144944883	144994538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_144994288
ENSMUSG00000097427.6_103987773_103989826_1	chr10	+	1185	2	FSM	ENSMUSG00000097427.6	ENSMUST00000180692.3	509	2	0	-676	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	103987772	103989826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_103987818_103988686
ENSMUSG00000097431.3_51107820_51110159_1	chr14	+	483	3	NNC	ENSMUSG00000097431.3	novel	636	3	NA	NA	0	-132	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	0	83	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATGGAGGCAATTTCTT	2371	False	NA	NA	False	NA	NA	NA	51107819	51110159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_51108014_51109207_51109284_51109946
ENSMUSG00000097431.3_51107820_51114662_1	chr14	+	728	2	FSM	ENSMUSG00000097431.3	ENSMUST00000181482.2	2513	2	-13	1798	0	-119	multi-exon	FALSE	canonical	2	3	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTTTGTTTTGTTTTT	2371	False	NA	NA	False	NA	NA	NA	51107819	51114662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_51108014_51114128
ENSMUSG00000097431.3_51107820_51114781_1	chr14	+	847	2	FSM	ENSMUSG00000097431.3	ENSMUST00000181482.2	2513	2	-13	1679	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	2371	False	NA	NA	False	NA	NA	NA	51107819	51114781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_51108014_51114128
ENSMUSG00000097431.3_51107820_51114994_1	chr14	+	1060	2	FSM	ENSMUSG00000097431.3	ENSMUST00000181482.2	2513	2	-13	1466	0	213	multi-exon	FALSE	canonical	2	3	junction_1	0	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATGAAATAACACAAACAGC	2371	False	NA	NA	False	NA	NA	NA	51107819	51114994	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_51108014_51114128
ENSMUSG00000097439.7_21141027_21143198_1	chr9	+	1521	3	NIC	ENSMUSG00000097439.7	novel	2077	3	NA	NA	4328	-737	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	416	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGCAAAAGACATAATACCC	4267	False	NA	NA	False	NA	NA	NA	21141026	21143198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_21142165_21142545_21142723_21142992
ENSMUSG00000097439.7_21141363_21150116_1	chr9	+	2585	6	NIC	ENSMUSG00000097439.7	novel	508	5	NA	NA	4664	5774	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	196	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGCCGCGCGGGTCACGGT	4603	False	NA	NA	False	NA	NA	NA	21141362	21150116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150088
ENSMUSG00000097445.2_57428557_57439710_1	chr9	-	647	5	NNC	ENSMUSG00000097445.2	novel	2505	2	NA	NA	5202	10013	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10758	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGGTACAGCAGTTCGCG	9623	False	NA	NA	False	NA	NA	NA	57439710	57428556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_57428699_57436238_57436356_57437523_57437646_57438951_57439086_57439578
ENSMUSG00000097445.2_57428557_57439710_2	chr9	-	638	5	NNC	ENSMUSG00000097445.2	novel	2505	2	NA	NA	5202	10013	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3739	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGGTACAGCAGTTCGCG	9623	False	NA	NA	False	NA	NA	NA	57439710	57428556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_57428699_57436238_57436350_57437523_57437646_57438958_57439076_57439564
ENSMUSG00000097445.2_57428557_57439710_3	chr9	-	645	5	NNC	ENSMUSG00000097445.2	novel	2505	2	NA	NA	5202	10013	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	30895	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGGTACAGCAGTTCGCG	9623	False	NA	NA	False	NA	NA	NA	57439710	57428556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_57428699_57436238_57436356_57437523_57437640_57438951_57439076_57439564
ENSMUSG00000097445.2_57428557_57439710_4	chr9	-	651	5	NIC	ENSMUSG00000097445.2	novel	2505	2	NA	NA	5202	10013	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	46446	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGGTACAGCAGTTCGCG	9623	False	NA	NA	False	NA	NA	NA	57439710	57428556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_57428699_57436238_57436356_57437523_57437646_57438951_57439076_57439564
ENSMUSG00000097445.2_57428557_57439710_5	chr9	-	645	5	NNC	ENSMUSG00000097445.2	novel	2505	2	NA	NA	5202	10013	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	23443	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGGTACAGCAGTTCGCG	9623	False	NA	NA	False	NA	NA	NA	57439710	57428556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_57428699_57436238_57436350_57437523_57437646_57438951_57439076_57439564
ENSMUSG00000097445.2_57428557_57439710_6	chr9	-	606	5	NNC	ENSMUSG00000097445.2	novel	2505	2	NA	NA	5202	10013	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1335	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGGTACAGCAGTTCGCG	9623	False	NA	NA	False	NA	NA	NA	57439710	57428556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_57428699_57436238_57436356_57437523_57437646_57438996_57439076_57439564
ENSMUSG00000097445.2_57428616_57439710_1	chr9	-	580	5	NNC	ENSMUSG00000097445.2	novel	2505	2	NA	NA	5202	9954	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	914	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATGACGGCGACCACAGC	9623	False	NA	NA	False	NA	NA	NA	57439710	57428615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_57428699_57436238_57436350_57437523_57437640_57438951_57439076_57439564
ENSMUSG00000097445.2_57428616_57439710_2	chr9	-	578	5	NNC	ENSMUSG00000097445.2	novel	2505	2	NA	NA	5202	9954	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	799	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATGACGGCGACCACAGC	9623	False	NA	NA	False	NA	NA	NA	57439710	57428615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_57428699_57436238_57436356_57437523_57437646_57438951_57439076_57439578
ENSMUSG00000097472.2_72889102_72906986_1	chr8	-	2129	8	NIC	ENSMUSG00000097472.2	novel	1745	2	NA	NA	-12322	2131	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1757	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACGCCGGGGCCGCCCCC	NA	False	NA	NA	False	NA	NA	NA	72906986	72889101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_72889298_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
ENSMUSG00000097472.2_72889652_72906986_1	chr8	-	2046	8	NIC	ENSMUSG00000097472.2	novel	1745	2	NA	NA	-12322	1581	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1680	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGACGTGCCGGGAAAGTT	NA	False	NA	NA	False	NA	NA	NA	72906986	72889651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_72889765_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
ENSMUSG00000097483.3_66651224_66667587_1	chr13	-	1342	5	NNC	ENSMUSG00000097483.3	novel	1519	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	28.5864915650732	777	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGAACTGTTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	66667587	66651223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66652035_66652807_66652875_66653161_66653268_66654410_66654592_66667410
ENSMUSG00000097503.3_169796978_169799965_1	chr1	+	782	2	NIC	ENSMUSG00000097503.3	novel	1135	3	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	3	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACGTTCCATTCCTTTTTC	NA	False	NA	NA	False	AATAAA	-24	NA	169796977	169799965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_169797145_169799350
ENSMUSG00000097519.3_57401349_57416703_1	chr1	-	986	3	ISM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	0	2968	0	-2968	5prime_fragment	FALSE	canonical	3	59	junction_2	8.5	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTATGGCTACACAATGCT	NA	False	NA	NA	False	NA	NA	NA	57416703	57401348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_57401923_57414406_57414679_57416563
ENSMUSG00000097519.3_57401631_57416703_1	chr1	-	704	3	ISM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	0	3250	0	-3250	5prime_fragment	FALSE	canonical	3	59	junction_2	8.5	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGTTTGCTATCTGGC	NA	False	NA	NA	False	NA	NA	NA	57416703	57401630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_57401923_57414406_57414679_57416563
ENSMUSG00000097519.3_57401757_57416703_1	chr1	-	578	3	ISM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	0	3376	0	-3376	5prime_fragment	FALSE	canonical	3	59	junction_2	8.5	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGATGCTTTTGAAGAC	NA	False	NA	NA	False	NA	NA	NA	57416703	57401756	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_57401923_57414406_57414679_57416563
ENSMUSG00000097525.3_127064433_127086513_2	chr6	+	1295	6	Genic_Genomic	ENSMUSG00000097525.3	novel	1466	3	NA	NA	-12827	-917	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3620	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCGTCTGCACGGCGGA	NA	False	NA	NA	False	NA	NA	NA	127064432	127086513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_127065266_127066155_127066267_127068146_127068225_127069583_127069700_127078807_127078850_127086398
ENSMUSG00000097525.3_127064433_127086513_3	chr6	+	1295	5	Genic_Genomic	ENSMUSG00000097525.3	novel	1466	3	NA	NA	-12827	-917	multi-exon	FALSE	non_canonical	0	0	junction_1	0	597	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCGTCTGCACGGCGGA	NA	False	NA	NA	False	NA	NA	NA	127064432	127086513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_127065266_127066155_127066267_127068146_127068225_127069583_127069738_127086394
ENSMUSG00000097525.3_127064433_127086513_4	chr6	+	1291	6	Genic_Genomic	ENSMUSG00000097525.3	novel	1466	3	NA	NA	-12827	-917	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3679	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCGTCTGCACGGCGGA	NA	False	NA	NA	False	NA	NA	NA	127064432	127086513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_127065260_127066155_127066267_127068146_127068225_127069583_127069706_127078811_127078850_127086398
ENSMUSG00000097532.3_95334646_95338398_1	chr3	+	1135	3	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-336	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_1	55	399	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCCAGTGTCTTCCTCT	NA	False	NA	8	True	AGTAAA	-22	NA	95334645	95338398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_95334711_95335864_95336134_95337597
ENSMUSG00000097532.3_95334646_95338398_2	chr3	+	885	4	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-336	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	21.4527905462721	498	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCCAGTGTCTTCCTCT	NA	False	NA	8	True	AGTAAA	-22	NA	95334645	95338398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_95334711_95335864_95336134_95337602_95337750_95337994
ENSMUSG00000097532.3_95334646_95338400_1	chr3	+	892	4	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-336	2	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	52.0917993119412	517	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGTGTCTTCCTCTAT	NA	False	NA	10	True	AGTAAA	-24	NA	95334645	95338400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_95334711_95335864_95336134_95337597_95337750_95337994
ENSMUSG00000097532.3_95334982_95338400_2	chr3	+	852	4	NNC	ENSMUSG00000097532.3	novel	2559	2	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	55.6437078403499	491	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGTGTCTTCCTCTAT	NA	False	NA	10	True	AGTAAA	-24	NA	95334981	95338400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_+_95335007_95335864_95336134_95337597_95337750_95337994
ENSMUSG00000097537.3_11021230_11041196_1	chr16	+	563	3	FSM	ENSMUSG00000097537.3	ENSMUST00000230166.2	517	3	-329	283	0	-283	multi-exon	FALSE	canonical	1	1	junction_1	0	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATCTTCAATGCTCTA	9699	False	NA	NA	False	AATAAA	-19	NA	11021229	11041196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_11021612_11025355_11025441_11041100
ENSMUSG00000097537.3_11021230_11041196_2	chr16	+	478	2	FSM	ENSMUSG00000097537.3	ENSMUST00000181526.3	2942	2	0	2464	0	-283	multi-exon	FALSE	canonical	1	6	junction_1	0	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATCTTCAATGCTCTA	9699	False	NA	NA	False	AATAAA	-19	NA	11021229	11041196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_11021612_11041100
ENSMUSG00000097543.2_86216115_86217008_1	chr12	+	331	2	ISM	ENSMUSG00000097543.2	ENSMUST00000181667.2	3160	5	0	24868	0	-24868	5prime_fragment	FALSE	canonical	3	16	junction_1	0	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGCTTTGGCATTCTCTT	NA	False	NA	NA	False	AGTAAA	-18	NA	86216114	86217008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_86216220_86216782
ENSMUSG00000097543.2_86216115_86219676_2	chr12	+	1288	3	NIC	ENSMUSG00000097543.2	novel	3160	5	NA	NA	0	-22200	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	2.5	85	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAGAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	86216114	86219676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_86216220_86216782_86217055_86218765
ENSMUSG00000097573.3_59139749_59159253_1	chr1	+	1822	12	Genic_Genomic	ENSMUSG00000097573.3	novel	2307	1	NA	NA	-19243	-2045	multi-exon	FALSE	non_canonical	0	0	junction_1	0	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCGCCCGGAGGCGTCGC	NA	False	NA	NA	False	NA	NA	NA	59139748	59159253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59157124_59157166_59159155
ENSMUSG00000097577.3_20738162_20753085_1	chr14	-	626	2	NIC	ENSMUSG00000097577.3	novel	1554	3	NA	NA	-5	-858	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCCTGTCCTGGAGATGA	NA	False	NA	NA	False	AAGAAA	-23	NA	20753085	20738161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_20738682_20752979
ENSMUSG00000097589.10_61869798_61886236_1	chr14	-	468	4	ISM	ENSMUSG00000097589.10	ENSMUST00000183079.8	535	5	-25	7166	0	0	5prime_fragment	FALSE	canonical	2	7	junction_3	4.92160768674447	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGACTTGCTTTTCTCG	NA	False	NA	NA	False	AATAAA	-24	NA	61886236	61869797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr14_-_61869933_61872973_61873041_61880808_61880905_61886066
ENSMUSG00000097595.3_132460978_132486840_1	chr7	-	2868	9	NIC	ENSMUSG00000097595.3	novel	599	3	NA	NA	3576	15490	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	288	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCCCCCATCATGCCCCG	NA	False	NA	NA	False	NA	NA	NA	132486840	132460977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478326_132478447_132480257_132480343_132482495_132482611_132484763
ENSMUSG00000097604.2_57905324_57914122_1	chr9	+	1557	2	FSM	ENSMUSG00000097604.2	ENSMUST00000181289.2	2169	2	0	612	0	-612	multi-exon	FALSE	canonical	2	3	junction_1	0	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTATTATTTATTTAT	NA	False	NA	26	True	AATACA	-22	NA	57905323	57914122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_57905602_57912843
ENSMUSG00000097620.8_140842624_140866704_1	chr4	+	1023	4	NNC	ENSMUSG00000097620.8	novel	2114	3	NA	NA	-347	21306	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	135	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGGTCCCTAGGGCGCG	NA	False	NA	NA	False	NA	NA	NA	140842623	140866704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_140843176_140845837_140846093_140847634_140847685_140866538
ENSMUSG00000097620.8_140842624_140867077_1	chr4	+	1036	5	NNC	ENSMUSG00000097620.8	novel	2114	3	NA	NA	-347	21679	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	321	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAACCCCTCCCCGCGCCT	NA	False	NA	NA	False	NA	NA	NA	140842623	140867077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_140843176_140843847_140843952_140845837_140846093_140847634_140847685_140867002
ENSMUSG00000097620.8_140842624_140867077_2	chr4	+	986	4	NNC	ENSMUSG00000097620.8	novel	2114	3	NA	NA	-347	21679	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	167	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAACCCCTCCCCGCGCCT	NA	False	NA	NA	False	NA	NA	NA	140842623	140867077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr4_+_140843176_140843847_140843952_140845837_140846093_140867002
ENSMUSG00000097624.3_15451843_15461045_1	chr17	-	1080	4	NIC	ENSMUSG00000097624.3	novel	1179	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	23.2999761564017	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCTTTTCTTTCTTTCT	NA	False	NA	-4	True	GATAAA	-16	NA	15461045	15451842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_15452674_15454190_15454265_15460531_15460624_15460962
ENSMUSG00000097639.3_41439898_41447627_1	chr3	-	1024	3	NNC	ENSMUSG00000097639.3	novel	2161	2	NA	NA	0	-1439	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	43	5071	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTAGGACTCTTAACTGTG	NA	False	NA	NA	False	TTTAAA	-4	NA	41447627	41439897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_41440396_41443750_41444172_41447522
ENSMUSG00000097639.3_41443239_41447627_1	chr3	-	1038	2	FSM	ENSMUSG00000097639.3	ENSMUST00000199155.2	2161	2	-2	1125	0	0	multi-exon	FALSE	canonical	3	87	junction_1	0	1613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTGCTCCAAATCCTGAA	NA	False	NA	-3	True	NA	NA	NA	41447627	41443238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_41444172_41447522
ENSMUSG00000097643.2_95685737_95688583_1	chr15	-	533	2	NNC	ENSMUSG00000097643.2	novel	2618	2	NA	NA	940	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	24	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATTTGTATATGTCTGT	NA	False	NA	NA	False	ATTAAA	-21	NA	95688583	95685736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_95686186_95688499
ENSMUSG00000097648.2_113819549_113891898_1	chr1	-	609	3	FSM	ENSMUSG00000097648.2	ENSMUST00000180837.2	1009	3	-34	434	-34	-434	multi-exon	FALSE	canonical	1	2	junction_2	1.5	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTAGTACTCCTTCCTTTA	NA	False	NA	NA	False	AATATA	-9	NA	113891898	113819548	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_113819779_113837064_113837094_113891548
ENSMUSG00000097680.2_135190450_135211822_1	chr1	+	2286	11	Genic_Genomic	ENSMUSG00000097680.2	novel	2782	3	NA	NA	14151	17641	multi-exon	FALSE	non_canonical	0	0	junction_1	0	210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCCACCATGCGCCCCGCC	NA	False	NA	NA	False	NA	NA	NA	135190449	135211822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_135190862_135191786_135191934_135192920_135193146_135194607_135194717_135194907_135195021_135195820_135195935_135199266_135199503_135200099_135200217_135205126_135205276_135206504_135206646_135211299
ENSMUSG00000097692.3_85858053_85884193_1	chr10	-	1813	9	Genic_Genomic	ENSMUSG00000097692.3	novel	1889	1	NA	NA	-26000	-409	multi-exon	FALSE	non_canonical	0	0	junction_1	0	267	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCGCGCCATCCCCCGAG	NA	False	NA	NA	False	NA	NA	NA	85884193	85858052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_-_85858195_85860279_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
ENSMUSG00000097709.9_3528230_3542406_1	chr13	+	669	4	NIC	ENSMUSG00000097709.9	novel	593	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	13.1993265821489	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGTTTTTGCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	3528229	3542406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_3528391_3529908_3530002_3535030_3535221_3542181
ENSMUSG00000097709.9_3528230_3542406_2	chr13	+	613	4	FSM	ENSMUSG00000097709.9	ENSMUST00000221008.2	2568	4	-37	1992	0	0	multi-exon	FALSE	canonical	2	6	junction_1	6.18241233033047	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGTTTTTGCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	3528229	3542406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_3528353_3529908_3530002_3535048_3535221_3542181
ENSMUSG00000097724.3_63849751_63872087_1	chr3	+	3048	6	NIC	ENSMUSG00000097724.3	novel	2669	2	NA	NA	-21303	-784	intron_retention	FALSE	non_canonical	0	0	junction_1	0	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCCGGTGGCGGCGACC	NA	False	NA	NA	False	NA	NA	NA	63849750	63872087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_+_63850838_63851986_63852203_63854989_63855108_63855492_63855678_63861234_63861426_63870836
ENSMUSG00000097743.2_56905956_56934887_1	chr14	-	2688	14	NIC	ENSMUSG00000097743.2	novel	1299	3	NA	NA	1931	27781	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAACGGCCACCGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	56934887	56905955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_56906022_56909861_56910018_56911347_56912197_56913978_56914076_56916020_56916276_56922414_56922541_56922618_56922708_56925821_56925963_56926485_56926573_56928363_56928519_56930880_56931036_56933077_56933206_56934115_56934200_56934587
ENSMUSG00000097746.3_3294482_3337547_1	chr18	+	1229	5	Genic_Genomic	ENSMUSG00000097746.3	novel	6745	1	NA	NA	-42198	-5935	multi-exon	FALSE	non_canonical	0	0	junction_1	0	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCCGCGCAAGCAGCGGA	NA	False	NA	NA	False	NA	NA	NA	3294481	3337547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr18_+_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3337379
ENSMUSG00000097750.3_30657200_30672612_1	chr7	+	1890	10	NIC	ENSMUSG00000090357.2	novel	279	2	NA	NA	1950	15183	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	231	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGACGGTGCCCGCGCGTC	6774	False	NA	NA	False	NA	NA	NA	30657199	30672612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30662235_30662293_30665393_30665514_30671292_30671638_30672504
ENSMUSG00000097763.2_87881150_87889512_1	chr6	-	1229	9	Genic_Genomic	ENSMUSG00000097763.2	novel	1115	3	NA	NA	1929	4675	multi-exon	TRUE	non_canonical	0	0	junction_1	0	338	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCCTTCTGCTTCTGTTCC	NA	False	NA	NA	False	NA	NA	NA	87889512	87881149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_87881174_87881797_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
ENSMUSG00000097763.2_87881150_87890577_1	chr6	-	2294	9	Genic_Genomic	ENSMUSG00000097763.2	novel	1115	3	NA	NA	864	4675	multi-exon	FALSE	non_canonical	0	0	junction_1	0	406	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCCTTCTGCTTCTGTTCC	NA	False	NA	NA	False	NA	NA	NA	87890577	87881149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_87881174_87881797_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
ENSMUSG00000097768.3_93589024_93591789_1	chr16	-	1687	3	NNC	ENSMUSG00000097768.3	novel	1580	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	9	240	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACACCTTTAAATAATA	6571	False	NA	NA	False	AATAAA	-28	NA	93591789	93589023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_93590271_93590397_93590505_93591456
ENSMUSG00000097768.3_93589024_93591948_1	chr16	-	1846	3	NNC	ENSMUSG00000097768.3	novel	1580	2	NA	NA	-159	0	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	9	264	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACACCTTTAAATAATA	6412	False	NA	NA	False	AATAAA	-28	NA	93591948	93589023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_93590271_93590397_93590505_93591456
ENSMUSG00000097768.3_93589169_93591789_1	chr16	-	1542	3	NNC	ENSMUSG00000097768.3	novel	1580	2	NA	NA	0	-145	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	9	125	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGCGTGCTGTTGTGCA	6571	False	NA	NA	False	TATAAA	-3	NA	93591789	93589168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_93590271_93590397_93590505_93591456
ENSMUSG00000097772.8_100568381_100577374_1	chr5	-	926	5	FSM	ENSMUSG00000097772.8	ENSMUST00000181873.8	626	5	20	-320	0	320	multi-exon	FALSE	canonical	3	343	junction_4	12.3389626792531	4204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTTTTGGTAAAGATTTA	NA	False	NA	-1	True	ATTAAA	-17	NA	100577374	100568380	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_100568832_100569826_100569901_100574594_100574664_100576955_100577098_100577184
ENSMUSG00000097772.8_100568701_100577234_1	chr5	-	466	5	FSM	ENSMUSG00000097772.8	ENSMUST00000181873.8	626	5	160	0	0	0	multi-exon	FALSE	canonical	3	343	junction_4	12.3389626792531	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTAGAATGTTGTGTT	NA	False	NA	-7	True	AATAAA	-31	NA	100577234	100568700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_100568832_100569826_100569901_100574594_100574664_100576955_100577098_100577184
ENSMUSG00000097779.3_53449053_53451162_1	chr19	+	1214	2	NNC	ENSMUSG00000097779.3	novel	1494	2	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	39	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGACTCAGCTCTGTTT	NA	False	NA	NA	False	AATAAA	-39	NA	53449052	53451162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_53449251_53450146
ENSMUSG00000097786.4_30847485_30864136_1	chr3	-	429	4	Genic_Genomic	ENSMUSG00000097786.4	novel	995	1	NA	NA	-16423	-198	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1632	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGGTTCCTTCTGACGTG	NA	False	NA	NA	False	NA	NA	NA	30864136	30847484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_30847533_30854279_30854389_30855208_30855315_30863970
ENSMUSG00000097786.4_30847485_30873893_1	chr3	-	1348	9	Genic_Genomic	ENSMUSG00000097786.4	novel	995	1	NA	NA	-26180	-198	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1870	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGGTTCCTTCTGACGTG	NA	False	NA	NA	False	NA	NA	NA	30873893	30847484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648_30873086_30873724
ENSMUSG00000097786.4_30847485_30874238_1	chr3	-	1693	9	Genic_Genomic	ENSMUSG00000097786.4	novel	995	1	NA	NA	-26525	-198	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2268	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGGTTCCTTCTGACGTG	NA	False	NA	NA	False	NA	NA	NA	30874238	30847484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648_30873086_30873724
ENSMUSG00000097787.3_32366616_32367538_1	chr19	+	595	2	FSM	ENSMUSG00000097787.3	ENSMUST00000181612.3	1647	2	0	1052	0	-1052	multi-exon	FALSE	canonical	0	0	junction_1	0	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTGCTCCTGTGTGAG	NA	False	NA	NA	False	AATACA	-21	NA	32366615	32367538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_32366777_32367104
ENSMUSG00000097793.2_81931397_81945038_1	chr13	-	789	5	NIC	ENSMUSG00000097793.2	novel	4608	2	NA	NA	-13170	-4505	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	11791	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTCCACGCCTCGGGGAC	NA	False	NA	NA	False	NA	NA	NA	81945038	81931396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_81931477_81932759_81932896_81934961_81935077_81940074_81940267_81944772
ENSMUSG00000097812.2_122576933_122587360_1	chr8	+	747	2	ISM	ENSMUSG00000097812.2	ENSMUST00000181776.2	599	3	0	0	0	0	intron_retention	FALSE	canonical	0	0	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	2125	False	NA	NA	False	AAGAAA	-26	NA	122576932	122587360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_122577154_122586834
ENSMUSG00000097817.3_29886361_29894483_1	chr7	+	1439	11	NNC	ENSMUSG00000097817.3	novel	779	2	NA	NA	-7018	-5747	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3031	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCGGGAGGGCGGGGCCG	8466	False	NA	NA	False	NA	NA	NA	29886360	29894483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890090_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430
ENSMUSG00000097817.3_29886415_29894483_1	chr7	+	1392	11	NIC	ENSMUSG00000097817.3	novel	779	2	NA	NA	-6964	-5747	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	3460	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCGGGAGGGCGGGGCCG	8520	False	NA	NA	False	NA	NA	NA	29886414	29894483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430
ENSMUSG00000097828.3_99481294_99552070_1	chr13	-	1844	11	NNC	ENSMUSG00000097828.3	novel	3997	2	NA	NA	-2686	52138	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1570	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGGCGGGCGTGGGGGGA	NA	False	NA	NA	False	NA	NA	NA	99552070	99481293	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547790_99547929_99548702_99548874_99551246
ENSMUSG00000097828.3_99481294_99552070_2	chr13	-	1846	11	NNC	ENSMUSG00000097828.3	novel	3997	2	NA	NA	-2686	52138	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1585	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGGCGGGCGTGGGGGGA	NA	False	NA	NA	False	NA	NA	NA	99552070	99481293	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_99481388_99484846_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
ENSMUSG00000097854.2_79745886_79752764_1	chr10	+	1840	8	Genic_Genomic	ENSMUSG00000097854.2	novel	285	1	NA	NA	-804	5790	multi-exon	FALSE	non_canonical	0	0	junction_1	0	430	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGCGCGGGGCGGAGTCTG	NA	False	NA	NA	False	NA	NA	NA	79745885	79752764	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_79746974_79747775_79747832_79747908_79748013_79748229_79748316_79748482_79748604_79749058_79749181_79749390_79749546_79752656
ENSMUSG00000097855.9_29498088_29499583_1	chr19	-	576	2	ISM	ENSMUSG00000097855.9	ENSMUST00000180737.2	2319	4	-194	17025	-189	-17025	5prime_fragment	FALSE	canonical	3	5	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATACTTTAACATTGTGAA	789	False	NA	NA	False	AATATA	-22	NA	29499583	29498087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_29498370_29499289
ENSMUSG00000097874.4_97798527_97817956_1	chr16	-	1206	4	NIC	ENSMUSG00000097874.4	novel	720	2	NA	NA	-19337	-2664	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	174	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACCGCACCCGGAAAACC	NA	False	NA	NA	False	NA	NA	NA	97817956	97798526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_97798637_97809828_97809956_97816865_97816920_97817041
ENSMUSG00000097874.4_97798527_97832638_1	chr16	-	598	6	NIC	ENSMUSG00000097874.4	novel	720	2	NA	NA	-34019	-2664	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	382	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACCGCACCCGGAAAACC	NA	False	NA	NA	False	NA	NA	NA	97832638	97798526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_97798637_97809828_97809956_97810143_97810205_97811318_97811369_97816865_97816920_97832442
ENSMUSG00000097876.2_56989225_56994936_1	chr16	+	2021	4	NNC	ENSMUSG00000097876.2	novel	1726	4	NA	NA	1461	160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	74	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCCCACCTCCACTCCAC	NA	False	NA	NA	False	NA	NA	NA	56989224	56994936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_56990804_56991985_56992181_56993386_56993523_56994825
ENSMUSG00000097887.3_50127288_50128418_1	chr11	+	573	5	NNC	ENSMUSG00000097887.3	novel	1235	3	NA	NA	-492	-25793	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTAGGCCTGAGGGTT	7687	False	NA	NA	False	NA	NA	NA	50127287	50128418	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr11_+_50127540_50127843_50127926_50128020_50128092_50128167_50128268_50128350
ENSMUSG00000097887.3_50127839_50175566_1	chr11	+	692	2	ISM	ENSMUSG00000097887.3	ENSMUST00000180443.3	1235	3	0	4100	0	-4100	5prime_fragment	FALSE	canonical	2	3	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTATGTTTTTTGTTTTTGT	8238	False	NA	NA	False	NA	NA	NA	50127838	50175566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr11_+_50128207_50175242
ENSMUSG00000097908.8_136948000_136962539_1	chr5	+	823	4	FSM	ENSMUSG00000097908.8	ENSMUST00000197095.5	617	4	-206	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	17.326921891156	2971	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCTTCATCTATGGTCT	NA	False	NA	NA	False	NA	NA	NA	136947999	136962539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_136948286_136951160_136951282_136954557_136954750_136962315
ENSMUSG00000097908.8_136948206_136962539_1	chr5	+	767	5	NNC	ENSMUSG00000097908.8	novel	617	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	47.2069910076887	3174	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCTTCATCTATGGTCT	NA	False	NA	NA	False	NA	NA	NA	136948205	136962539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_136948286_136951160_136951282_136954557_136954750_136959237_136959388_136962315
ENSMUSG00000097908.8_136948206_136962539_2	chr5	+	704	5	NNC	ENSMUSG00000097908.8	novel	617	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	34.2673313813609	2853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCTTCATCTATGGTCT	NA	False	NA	NA	False	NA	NA	NA	136948205	136962539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_136948286_136948451_136948539_136951160_136951282_136954557_136954750_136962315
ENSMUSG00000097915.3_101119076_101122664_1	chr15	-	1320	3	FSM	ENSMUSG00000097915.3	ENSMUST00000229239.2	484	3	-6	-830	-6	0	multi-exon	FALSE	canonical	3	7	junction_2	0.5	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCGCCTCTGCTTCTGTGT	NA	False	NA	NA	False	AATAAA	-13	NA	101122664	101119075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_101120071_101121361_101121515_101122492
ENSMUSG00000097929.10_105303087_105348367_1	chr12	+	1260	3	NNC	ENSMUSG00000097929.10	novel	3282	3	NA	NA	-165	-1822	intron_retention	FALSE	canonical	3	11	junction_1	10.5	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATATTTGGAGAAGCAC	NA	False	NA	30	True	AATAAA	-24	NA	105303086	105348367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_105303253_105303488_105303819_105347603
ENSMUSG00000097979.3_128178917_128290936_1	chr6	-	2017	3	NNC	ENSMUSG00000097979.3	novel	885	3	NA	NA	-110697	196	intron_retention	FALSE	non_canonical	0	0	junction_1	0	42935	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAGGCGAAAGTGAAAT	9898	False	NA	NA	False	AATAAA	-28	NA	128290936	128178916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_128179362_128179445_128180377_128290295
ENSMUSG00000097979.3_128178917_128290936_2	chr6	-	2000	3	NNC	ENSMUSG00000097979.3	novel	885	3	NA	NA	-110697	196	intron_retention	FALSE	non_canonical	0	0	junction_1	0	42792	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAGGCGAAAGTGAAAT	9898	False	NA	NA	False	AATAAA	-28	NA	128290936	128178916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_128179362_128179445_128180353_128290288
ENSMUSG00000097979.3_128178917_128290936_3	chr6	-	1976	3	NNC	ENSMUSG00000097979.3	novel	885	3	NA	NA	-110697	196	intron_retention	FALSE	canonical	0	0	junction_1	0	43044	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAGGCGAAAGTGAAAT	9898	False	NA	NA	False	AATAAA	-28	NA	128290936	128178916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_128179362_128179445_128180304_128290263
ENSMUSG00000097990.2_47489472_47525475_1	chr19	+	1909	10	Genic_Genomic	ENSMUSG00000097990.2	novel	2765	3	NA	NA	-11949	20458	multi-exon	FALSE	non_canonical	0	0	junction_1	0	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCGAGCACACTCCCGCCG	NA	False	NA	NA	False	NA	NA	NA	47489471	47525475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr19_+_47490157_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634_47524811_47525252
ENSMUSG00000097993.8_135036236_135037614_1	chr1	-	402	3	NIC	ENSMUSG00000097993.8	novel	6108	37	NA	NA	-287	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_2	6	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGTTGTGTCTGCTTCTGC	NA	False	NA	-1	True	AATAAA	-18	NA	135037614	135036235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_135036434_135036656_135036793_135037546
ENSMUSG00000097993.8_135036236_135037965_2	chr1	-	887	6	ISM	ENSMUSG00000097993.8	ENSMUST00000183317.8	6108	37	22367	0	237	0	3prime_fragment	FALSE	canonical	3	8	junction_5	3.5213633723318	109	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGTTGTGTCTGCTTCTGC	NA	False	NA	-1	True	AATAAA	-18	NA	135037965	135036235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_-_135036434_135036656_135036793_135037023_135037188_135037300_135037418_135037546_135037676_135037822
ENSMUSG00000098090.9_95057540_95082560_1	chr17	+	1159	9	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_3	47.0790558528949	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTGTCCCCTCCCAT	NA	False	NA	NA	False	AATAAA	-14	NA	95057539	95082560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
ENSMUSG00000098090.9_95057540_95082560_2	chr17	+	1287	10	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_7	48.1350979465191	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTGTCCCCTCCCAT	NA	False	NA	NA	False	AATAAA	-14	NA	95057539	95082560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078540_95078667_95079284_95079389_95082319
ENSMUSG00000098090.9_95057540_95082560_3	chr17	+	1022	8	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	41.4305418250639	71	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTGTCCCCTCCCAT	NA	False	NA	NA	False	AATAAA	-14	NA	95057539	95082560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_95057661_95063861_95063952_95069889_95070049_95071199_95071311_95074284_95074376_95078561_95078667_95079284_95079389_95082319
ENSMUSG00000098090.9_95057540_95082560_4	chr17	+	1180	9	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_6	52.9339210714642	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTGTCCCCTCCCAT	NA	False	NA	NA	False	AATAAA	-14	NA	95057539	95082560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95069889_95070049_95071199_95071353_95074284_95074376_95078540_95078667_95079284_95079389_95082319
ENSMUSG00000098090.9_95057540_95101578_1	chr17	+	626	6	NNC	ENSMUSG00000098090.9	novel	799	3	NA	NA	0	19018	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	82.110657042798	341	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057539	95101578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_95057661_95060130_95060304_95062638_95062734_95063861_95063952_95092912_95092936_95101454
ENSMUSG00000098090.9_95057540_95101578_10	chr17	+	453	5	NNC	ENSMUSG00000098090.9	novel	799	3	NA	NA	0	19018	at_least_one_novel_splicesite	FALSE	canonical	3	132	junction_1	29.2232783924049	1310	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057539	95101578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95092912_95092936_95101454
ENSMUSG00000098090.9_95057540_95101578_7	chr17	+	468	5	NNC	ENSMUSG00000098090.9	novel	799	3	NA	NA	0	19018	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	73.1624903895432	1114	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057539	95101578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95092912_95092951_95101454
ENSMUSG00000098098.8_61759496_61780543_1	chr18	+	638	3	NNC	ENSMUSG00000098098.8	novel	483	3	NA	NA	-13117	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	37	64	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAATGACTTTCTTAATAG	NA	False	NA	17	True	AATAAA	-17	NA	61759495	61780543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_61759662_61778233_61778437_61780274
ENSMUSG00000098098.8_61772613_61780543_1	chr18	+	663	3	FSM	ENSMUSG00000098098.8	ENSMUST00000183083.8	483	3	0	-180	0	0	multi-exon	FALSE	canonical	3	10	junction_1	32.5	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAATGACTTTCTTAATAG	NA	False	NA	17	True	AATAAA	-17	NA	61772612	61780543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_61772804_61778233_61778437_61780274
ENSMUSG00000098098.8_61772613_61780543_2	chr18	+	755	4	NNC	ENSMUSG00000098098.8	novel	588	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	31.6262900483478	957	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAATGACTTTCTTAATAG	NA	False	NA	17	True	AATAAA	-17	NA	61772612	61780543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_61772840_61777285_61777342_61778233_61778437_61780274
ENSMUSG00000098098.8_61772724_61780543_1	chr18	+	651	3	NNC	ENSMUSG00000098098.8	novel	588	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	26	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAATGACTTTCTTAATAG	NA	False	NA	17	True	AATAAA	-17	NA	61772723	61780543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_61772840_61778233_61778500_61780274
ENSMUSG00000098098.8_61772724_61780543_2	chr18	+	385	2	NIC	ENSMUSG00000098098.8	novel	588	3	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAATGACTTTCTTAATAG	NA	False	NA	17	True	AATAAA	-17	NA	61772723	61780543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_61772840_61780274
ENSMUSG00000098098.8_61772724_61780543_3	chr18	+	552	3	FSM	ENSMUSG00000098098.8	ENSMUST00000183083.8	483	3	111	-180	0	0	multi-exon	FALSE	canonical	3	10	junction_1	32.5	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAATGACTTTCTTAATAG	NA	False	NA	17	True	AATAAA	-17	NA	61772723	61780543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_61772804_61778233_61778437_61780274
ENSMUSG00000098098.8_61777000_61780543_1	chr18	+	515	3	NNC	ENSMUSG00000098098.8	novel	483	3	NA	NA	4276	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	37	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAATGACTTTCTTAATAG	NA	False	NA	17	True	AATAAA	-17	NA	61776999	61780543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_61777043_61778233_61778437_61780274
ENSMUSG00000098112.9_100538964_100567434_1	chr15	-	1991	12	NNC	ENSMUSG00000098112.9	novel	2036	11	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	1	10	junction_1	41.9606269599971	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAGGTGTCTTGCCCTGAA	NA	False	NA	-5	True	AATAAA	-17	NA	100567434	100538963	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_100539166_100539204_100539446_100542693_100543421_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
ENSMUSG00000098112.9_100538964_100567434_2	chr15	-	1987	12	NNC	ENSMUSG00000098112.9	novel	2036	11	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	44.499419626636	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAGGTGTCTTGCCCTGAA	NA	False	NA	-5	True	AATAAA	-17	NA	100567434	100538963	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_100539184_100539226_100539446_100542693_100543421_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
ENSMUSG00000098161.2_118207335_118235204_1	chr9	-	450	4	NNC	ENSMUSG00000098161.2	novel	388	4	NA	NA	-37	25830	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	25.8499946271217	193	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAATAGATTATGAATGTTA	NA	False	NA	NA	False	NA	NA	NA	118235204	118207334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_118207408_118233371_118233556_118233797_118233891_118235104
ENSMUSG00000098161.2_118232912_118235204_1	chr9	-	634	4	NNC	ENSMUSG00000098161.2	novel	388	4	NA	NA	-37	253	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	11.8602979164381	210	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCGGCTTTATTTATGTTG	NA	False	NA	NA	False	CATAAA	-14	NA	118235204	118232911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_118233232_118233371_118233493_118233797_118233891_118235104
ENSMUSG00000098161.2_118232912_118235204_2	chr9	-	644	5	NNC	ENSMUSG00000098161.2	novel	388	4	NA	NA	-37	253	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	22.1923410211721	76	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCGGCTTTATTTATGTTG	NA	False	NA	NA	False	CATAAA	-14	NA	118235204	118232911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_118233232_118233371_118233415_118233469_118233558_118233797_118233891_118235104
ENSMUSG00000098161.2_118232912_118235204_3	chr9	-	699	4	NNC	ENSMUSG00000098161.2	novel	388	4	NA	NA	-37	253	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	17.5562587763516	224	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCGGCTTTATTTATGTTG	NA	False	NA	NA	False	CATAAA	-14	NA	118235204	118232911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_118233232_118233371_118233558_118233797_118233891_118235104
ENSMUSG00000098184.2_122677231_122752916_1	chr8	-	2406	14	Genic_Genomic	ENSMUSG00000098184.2	novel	972	1	NA	NA	-75532	-818	multi-exon	FALSE	non_canonical	0	0	junction_1	0	185	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGGGCCGGTCGGGAAGG	NA	False	NA	NA	False	NA	NA	NA	122752916	122677230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
ENSMUSG00000098184.2_122677335_122752916_1	chr8	-	2302	14	Genic_Genomic	ENSMUSG00000098184.2	novel	972	1	NA	NA	-75532	-922	multi-exon	FALSE	non_canonical	0	0	junction_1	0	141	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGTCCTCGCGAGAGAAGC	NA	False	NA	NA	False	NA	NA	NA	122752916	122677334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
ENSMUSG00000098197.3_34311314_34314207_1	chr17	-	1087	5	NIC	ENSMUSG00000098197.3	novel	1801	5	NA	NA	49	-8387	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATCAGAGCAGTTCTCTGA	1706	False	NA	NA	False	AAAAAG	-43	NA	34314207	34311313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_34311503_34312806_34313056_34313281_34313564_34313656_34313793_34313976
ENSMUSG00000098197.3_34313477_34314207_2	chr17	-	454	3	Genic_Genomic	ENSMUSG00000098197.3	novel	1668	5	NA	NA	49	-10550	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGAACTTCCGGAACCTG	1706	False	NA	NA	False	NA	NA	NA	34314207	34313476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_-_34313564_34313656_34313793_34313976
ENSMUSG00000098197.3_34313477_34314329_1	chr17	-	576	3	Genic_Genomic	ENSMUSG00000098197.3	novel	1668	5	NA	NA	-46	-10550	multi-exon	FALSE	non_canonical	0	0	junction_1	0	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGAACTTCCGGAACCTG	1584	False	NA	NA	False	NA	NA	NA	34314329	34313476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_-_34313564_34313656_34313793_34313976
ENSMUSG00000098274.8_55786784_55791798_1	chr16	+	519	6	NNC	ENSMUSG00000098274.8	novel	677	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	5218.49868832023	53076	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786783	55791798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_55786802_55786909_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791685
ENSMUSG00000098274.8_55786784_55791798_2	chr16	+	627	5	NNC	ENSMUSG00000098274.8	novel	639	5	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_4	5833.47979339948	12251	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786783	55791798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791685
ENSMUSG00000098274.8_55786784_55791798_3	chr16	+	515	6	NNC	ENSMUSG00000098274.8	novel	677	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	5218.49868832023	16932	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786783	55791798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_55786802_55786909_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791689
ENSMUSG00000098274.8_55786784_55791798_4	chr16	+	545	6	NNC	ENSMUSG00000098274.8	novel	677	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	5255.34282801798	49461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786783	55791798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_55786802_55786909_55786986_55787422_55787534_55789858_55790010_55790474_55790539_55791673
ENSMUSG00000098294.2_72681345_72686380_1	chr9	-	648	3	NNC	ENSMUSG00000098294.2	novel	527	2	NA	NA	-2873	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	1	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCAGCTGTCTCTCTTGTT	4665	False	NA	NA	False	NA	NA	NA	72686380	72681344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_72681693_72683328_72683532_72686283
ENSMUSG00000098306.10_133246865_133249681_1	chr1	+	824	4	ISM	ENSMUSG00000103421.2	ENSMUST00000094557.7	1865	5	9327	1083	9237	893	3prime_fragment	FALSE	canonical	1	1	junction_1	2.16024689946929	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGATTTGGCGTTGATG	769	False	NA	NA	False	ATTAAA	-20	NA	133246864	133249681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_133247111_133247890_133248070_133248728_133248793_133249346
ENSMUSG00000098318.8_134905955_134928539_1	chr6	+	540	2	FSM	ENSMUSG00000098318.8	ENSMUST00000183867.7	5662	2	-100	5222	-100	1	multi-exon	FALSE	canonical	3	145	junction_1	0	1257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTGTTTCTGGGCTCTGT	7865	False	NA	25	True	NA	NA	NA	134905954	134928539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_134906224_134928268
ENSMUSG00000098318.8_134905955_134928539_2	chr6	+	565	2	FSM	ENSMUSG00000098318.8	ENSMUST00000184504.2	544	2	-163	142	-100	1	multi-exon	FALSE	canonical	3	15	junction_1	0	943	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTGTTTCTGGGCTCTGT	7865	False	NA	25	True	NA	NA	NA	134905954	134928539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_134906249_134928268
ENSMUSG00000098318.8_134906096_134928539_2	chr6	+	340	2	NIC	ENSMUSG00000098318.8	novel	474	3	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	2	8	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTGTTTCTGGGCTCTGT	8006	False	NA	25	True	NA	NA	NA	134906095	134928539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_134906165_134928268
ENSMUSG00000098318.8_134906096_134928539_3	chr6	+	399	2	FSM	ENSMUSG00000098318.8	ENSMUST00000183867.7	5662	2	41	5222	0	1	multi-exon	FALSE	canonical	3	145	junction_1	0	898	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTGTTTCTGGGCTCTGT	8006	False	NA	25	True	NA	NA	NA	134906095	134928539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_134906224_134928268
ENSMUSG00000098332.3_72947012_72950061_1	chr9	+	478	2	NNC	ENSMUSG00000098332.3	novel	496	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	0	3934	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAAGTTATTTATAAAGGT	NA	False	NA	NA	False	AATAAA	-19	NA	72947011	72950061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_72947148_72949719
ENSMUSG00000098702.2_61859461_61868990_1	chr18	+	1058	3	NNC	ENSMUSG00000098702.2	novel	890	2	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.5	213	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGATCTCTCAGTTTGCAG	NA	False	NA	13	True	AATAAA	-27	NA	61859460	61868990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_61860074_61867419_61867543_61868668
ENSMUSG00000098721.3_70641758_70663341_1	chr18	+	2298	9	Genic_Genomic	ENSMUSG00000098721.3	novel	104	1	NA	NA	-8099	13381	multi-exon	FALSE	non_canonical	0	0	junction_1	0	131	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGACTCCACCCCCATCTT	NA	False	NA	NA	False	NA	NA	NA	70641757	70663341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr18_+_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70663258
ENSMUSG00000098721.3_70641758_70663341_2	chr18	+	2424	10	Genic_Genomic	ENSMUSG00000098721.3	novel	104	1	NA	NA	-8099	13381	multi-exon	FALSE	non_canonical	0	0	junction_1	0	243	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGACTCCACCCCCATCTT	NA	False	NA	NA	False	NA	NA	NA	70641757	70663341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr18_+_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70663258
ENSMUSG00000098789.8_119857974_119863075_1	chr2	+	1190	6	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_4	57.5902769571392	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857973	119863075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119862321_119862482_119862594
ENSMUSG00000098789.8_119857974_119863075_2	chr2	+	1278	8	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	46.6533022651655	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857973	119863075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_119858058_119860623_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862055_119862133_119862321_119862482_119862594
ENSMUSG00000098789.8_119857974_119863075_3	chr2	+	1267	7	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_4	49.0736408087093	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857973	119863075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119862055_119862133_119862321_119862482_119862594
ENSMUSG00000098789.8_119857974_119863075_4	chr2	+	1133	5	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	65.0403720776565	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857973	119863075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119862321_119862482_119862594
ENSMUSG00000098789.8_119857974_119863075_5	chr2	+	1436	8	ISM	ENSMUSG00000033852.17	ENSMUST00000162393.8	5092	27	0	10439	0	-2399	5prime_fragment	FALSE	canonical	3	18	junction_5	45.292248289327	894	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857973	119863075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119861982_119862133_119862321_119862482_119862594
ENSMUSG00000098789.8_119857974_119863075_6	chr2	+	1351	8	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	55.0810163971848	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857973	119863075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_119858058_119860623_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119861982_119862133_119862321_119862482_119862594
ENSMUSG00000098789.8_119857974_119863075_7	chr2	+	1286	7	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_5	49.2084568161025	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857973	119863075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862321_119862482_119862594
ENSMUSG00000098789.8_119857974_119863075_8	chr2	+	1201	7	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	59.4635742843185	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857973	119863075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_119858058_119860623_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862321_119862482_119862594
ENSMUSG00000098894.2_76219740_76228128_1	chr9	+	633	3	NNC	ENSMUSG00000098894.2	novel	581	2	NA	NA	-7119	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	3	286	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGCAGACTTGACAGTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76219739	76228128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_76219851_76226917_76227020_76227708
ENSMUSG00000098894.2_76219796_76228596_1	chr9	+	1045	3	NNC	ENSMUSG00000098894.2	novel	581	2	NA	NA	-7063	468	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	3	266	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGAAGGTTTATAACTAT	NA	False	NA	NA	False	AATAAA	-14	NA	76219795	76228596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_76219851_76226917_76227020_76227708
ENSMUSG00000098923.2_119453890_119455952_1	chr1	+	1687	2	FSM	ENSMUSG00000098923.2	ENSMUST00000183607.2	681	2	-13	-993	0	-761	multi-exon	FALSE	canonical	2	5	junction_1	0	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGTTTCTGTGTGAAGAT	NA	False	NA	31	True	NA	NA	NA	119453889	119455952	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_119454278_119454653
ENSMUSG00000098950.8_155940040_155953859_1	chr2	-	488	3	FSM	ENSMUSG00000089824.11	ENSMUST00000059647.12	6667	3	17	6162	17	-170	multi-exon	FALSE	canonical	3	245	junction_2	24	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATGCAAAATATGATTGA	NA	False	NA	NA	False	ATTAAA	-37	NA	155953859	155940039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155940293_155945268_155945350_155953705
ENSMUSG00000099041.2_30156831_30172160_1	chr2	+	1429	10	NIC	ENSMUSG00000079484.13	novel	1678	12	NA	NA	0	0	intron_retention	FALSE	canonical	2	39	junction_2	16.779617264871	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	NA	False	NA	NA	False	AATAAA	-17	NA	30156830	30172160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_30156954_30159700_30159860_30164481_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
ENSMUSG00000099098.5_28851937_28855608_1	chr7	+	1240	8	Fusion	ENSMUSG00000030589.16_ENSMUSG00000099098.5	novel	1231	3	NA	NA	2316	-735	intron_retention	FALSE	non_canonical	0	0	junction_1	0	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGACCCGGTGCGCGCGCC	NA	False	NA	NA	False	NA	NA	NA	28851936	28855608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr7_+_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309_28855456_28855554
ENSMUSG00000099338.2_13250728_13251790_1	chr8	+	669	2	ISM	ENSMUSG00000099338.2	ENSMUST00000187595.2	856	3	-92	5917	0	0	5prime_fragment	FALSE	canonical	3	6	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGCCTCCATCTTT	NA	False	NA	NA	False	NA	NA	NA	13250727	13251790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_13251294_13251687
ENSMUSG00000099370.2_75554753_75563038_1	chr3	-	1887	2	NIC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	230	junction_1	0	1697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563038	75554752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_75556298_75562696
ENSMUSG00000099370.2_75554753_75563059_1	chr3	-	1783	3	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-21	0	intron_retention	FALSE	canonical	3	71	junction_2	79.5	1037	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563059	75554752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_75556298_75562696_75562869_75562993
ENSMUSG00000099370.2_75555289_75563059_1	chr3	-	1247	3	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-21	-142	at_least_one_novel_splicesite	FALSE	canonical	3	71	junction_2	79.5	764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGGTGGTCTCCATTCT	NA	False	NA	-4	True	AATAAA	-15	NA	75563059	75555288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_75556298_75562696_75562869_75562993
ENSMUSG00000099370.2_75555289_75563059_2	chr3	-	1278	3	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-21	-142	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	102.5	782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGGTGGTCTCCATTCT	NA	False	NA	-4	True	AATAAA	-15	NA	75563059	75555288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_75556298_75562696_75562869_75562962
ENSMUSG00000099370.2_75555677_75563038_1	chr3	-	963	2	ISM	ENSMUSG00000099370.2	ENSMUST00000190602.2	1026	3	0	924	0	-530	5prime_fragment	FALSE	canonical	3	230	junction_1	0	966	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGGGGGCTATTAGACATT	NA	False	NA	NA	False	ATTAAA	-2	NA	75563038	75555676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_75556298_75562696
ENSMUSG00000099370.2_75555677_75563059_1	chr3	-	984	2	ISM	ENSMUSG00000099370.2	ENSMUST00000190602.2	1026	3	-21	924	-21	-530	5prime_fragment	FALSE	canonical	3	230	junction_1	0	1144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGGGGGCTATTAGACATT	NA	False	NA	NA	False	ATTAAA	-2	NA	75563059	75555676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_75556298_75562696
ENSMUSG00000099370.2_75555677_75563059_2	chr3	-	859	3	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-21	-530	at_least_one_novel_splicesite	FALSE	canonical	3	71	junction_2	79.5	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGGGGGCTATTAGACATT	NA	False	NA	NA	False	ATTAAA	-2	NA	75563059	75555676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_75556298_75562696_75562869_75562993
ENSMUSG00000099370.2_75555677_75563059_3	chr3	-	890	3	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-21	-530	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	102.5	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGGGGGCTATTAGACATT	NA	False	NA	NA	False	ATTAAA	-2	NA	75563059	75555676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_75556298_75562696_75562869_75562962
ENSMUSG00000099474.2_30841415_30844105_1	chr17	-	919	3	ISM	ENSMUSG00000099474.2	ENSMUST00000188852.2	845	4	1774	0	1774	0	3prime_fragment	FALSE	canonical	3	280	junction_2	76	3225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTTTCCTCTGAGATG	NA	False	NA	-1	True	AATAAA	-25	NA	30844105	30841414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_-_30841669_30843173_30843588_30843854
ENSMUSG00000099474.2_30841415_30845845_1	chr17	-	758	3	NIC	ENSMUSG00000099474.2	novel	845	4	NA	NA	34	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_2	211.5	2151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTTTCCTCTGAGATG	NA	False	NA	-1	True	AATAAA	-25	NA	30845845	30841414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_30841669_30843173_30843588_30845755
ENSMUSG00000099474.2_30841415_30846494_1	chr17	-	765	3	NNC	ENSMUSG00000099474.2	novel	845	4	NA	NA	-615	0	at_least_one_novel_splicesite	FALSE	canonical	3	177	junction_2	127.5	2841	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTTTCCTCTGAGATG	NA	False	NA	-1	True	AATAAA	-25	NA	30846494	30841414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_30841669_30843173_30843588_30846397
ENSMUSG00000099498.2_13144917_13164711_1	chr1	+	499	3	NNC	ENSMUSG00000099498.2	novel	288	4	NA	NA	5855	15825	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTTGTGTGTGAAGAACAA	NA	False	NA	NA	False	AATAAA	-21	NA	13144916	13164711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_13145004_13148829_13148887_13164356
ENSMUSG00000099590.2_140415185_140417879_1	chr7	-	590	4	NNC	ENSMUSG00000099590.2	novel	1077	4	NA	NA	7723	1949	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	354	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGCTCCTTACCTGCGGC	NA	False	NA	NA	False	NA	NA	NA	140417879	140415184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_140415218_140415524_140415665_140416659_140416796_140417598
ENSMUSG00000099708.2_83679065_83710779_1	chr12	-	1095	11	Genic_Genomic	ENSMUSG00000099708.2	novel	2000	1	NA	NA	-30172	-457	multi-exon	FALSE	non_canonical	0	0	junction_1	0	540	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGCCGCAAAACACAGCCG	NA	False	NA	NA	False	NA	NA	NA	83710779	83679064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr12_-_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83707980_83708043_83710752
ENSMUSG00000099708.2_83679065_83710779_2	chr12	-	1151	11	Genic_Genomic	ENSMUSG00000099708.2	novel	2000	1	NA	NA	-30172	-457	multi-exon	FALSE	non_canonical	0	0	junction_1	0	192	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGCCGCAAAACACAGCCG	NA	False	NA	NA	False	NA	NA	NA	83710779	83679064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr12_-_83679192_83689175_83689294_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752
ENSMUSG00000099708.2_83679065_83710779_3	chr12	-	1159	12	Genic_Genomic	ENSMUSG00000099708.2	novel	2000	1	NA	NA	-30172	-457	multi-exon	FALSE	non_canonical	0	0	junction_1	0	366	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGCCGCAAAACACAGCCG	NA	False	NA	NA	False	NA	NA	NA	83710779	83679064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr12_-_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83707980_83708043_83710752
ENSMUSG00000099708.2_83679065_83721199_1	chr12	-	1906	15	Genic_Genomic	ENSMUSG00000099708.2	novel	2000	1	NA	NA	-40592	-457	multi-exon	FALSE	non_canonical	0	0	junction_1	0	991	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGCCGCAAAACACAGCCG	NA	False	NA	NA	False	NA	NA	NA	83721199	83679064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr12_-_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112
ENSMUSG00000099847.2_37635792_37637217_1	chr13	-	783	2	FSM	ENSMUSG00000099847.2	ENSMUST00000187093.2	354	2	-33	-396	-33	396	multi-exon	FALSE	canonical	3	19	junction_1	0	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTCTCAGTAAGTTGGCT	NA	False	NA	NA	False	ATTAAA	-36	NA	37637217	37635791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_37636445_37637087
ENSMUSG00000099847.2_37635955_37637217_1	chr13	-	620	2	FSM	ENSMUSG00000099847.2	ENSMUST00000187093.2	354	2	-33	-233	-33	233	multi-exon	FALSE	canonical	3	19	junction_1	0	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTTCTACCCTCCTTGA	NA	False	NA	NA	False	AATAAA	-15	NA	37637217	37635954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_37636445_37637087
ENSMUSG00000099851.2_31536900_31549556_1	chr12	+	1876	6	NIC	ENSMUSG00000099851.2	novel	704	3	NA	NA	-57	11668	intron_retention	FALSE	non_canonical	0	0	junction_1	0	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAACGGAAGTCAGTCGCT	NA	False	NA	NA	False	NA	NA	NA	31536899	31549556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_31538314_31540466_31540541_31541510_31541595_31542077_31542179_31544580_31544749_31549521
ENSMUSG00000099913.2_53336254_53365326_1	chr1	-	1880	10	NIC	ENSMUSG00000099913.2	novel	3142	7	NA	NA	26500	28412	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	112	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCTGCCAAGCTGCTCTA	NA	False	NA	NA	False	NA	NA	NA	53365326	53336253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_53336348_53338130_53338312_53344613_53344766_53354018_53354259_53357060_53357449_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
ENSMUSG00000099913.2_53352813_53365326_1	chr1	-	1662	8	NIC	ENSMUSG00000099913.2	novel	3142	7	NA	NA	26500	11853	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	354	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCACTACGCAGGCGCCCGG	NA	False	NA	NA	False	NA	NA	NA	53365326	53352812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_53353018_53354014_53354259_53357060_53357449_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
ENSMUSG00000099913.2_53352813_53365326_2	chr1	-	1657	8	NIC	ENSMUSG00000099913.2	novel	3142	7	NA	NA	26500	11853	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	337	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCACTACGCAGGCGCCCGG	NA	False	NA	NA	False	NA	NA	NA	53365326	53352812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_53353018_53354014_53354259_53357065_53357449_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
ENSMUSG00000099913.2_53352813_53365502_1	chr1	-	1838	8	NIC	ENSMUSG00000099913.2	novel	3142	7	NA	NA	26324	11853	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	377	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCACTACGCAGGCGCCCGG	NA	False	NA	NA	False	NA	NA	NA	53365502	53352812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_53353018_53354014_53354259_53357060_53357449_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
ENSMUSG00000099928.2_95853547_95896770_1	chr11	+	2824	15	NIC	ENSMUSG00000099928.2	novel	422	3	NA	NA	-43168	-2111	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	1952	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGCCGCCCTGGCGCCGCC	9676	False	NA	NA	False	NA	NA	NA	95853546	95896770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
ENSMUSG00000099928.2_95853955_95896770_1	chr11	+	2416	15	NIC	ENSMUSG00000099928.2	novel	422	3	NA	NA	-42760	-2111	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	582	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGCCGCCCTGGCGCCGCC	NA	False	NA	NA	False	NA	NA	NA	95853954	95896770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
ENSMUSG00000100141.2_9584181_9585295_1	chr19	+	1031	2	NNC	ENSMUSG00000100141.2	novel	1112	2	NA	NA	-287	-445	intron_retention	TRUE	non_canonical	0	0	junction_1	0	573	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTGAGAATCCATCAGAGA	NA	False	NA	NA	False	NA	NA	NA	9584180	9585295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_9584915_9584998
ENSMUSG00000100153.3_119339351_119341467_1	chr7	+	1253	2	FSM	ENSMUSG00000100153.3	ENSMUST00000207161.2	1437	2	202	-18	0	18	multi-exon	FALSE	canonical	3	469	junction_1	0	698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGAGCTTGGGAATGACA	NA	False	NA	NA	False	NA	NA	NA	119339350	119341467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_119340294_119341157
ENSMUSG00000100153.3_119339734_119341467_1	chr7	+	870	2	FSM	ENSMUSG00000100153.3	ENSMUST00000207161.2	1437	2	585	-18	383	18	multi-exon	FALSE	canonical	3	469	junction_1	0	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGAGCTTGGGAATGACA	NA	False	NA	NA	False	NA	NA	NA	119339733	119341467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_119340294_119341157
ENSMUSG00000100153.3_119340181_119341467_1	chr7	+	423	2	FSM	ENSMUSG00000100153.3	ENSMUST00000207161.2	1437	2	1032	-18	830	18	multi-exon	FALSE	canonical	3	469	junction_1	0	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGAGCTTGGGAATGACA	NA	False	NA	NA	False	NA	NA	NA	119340180	119341467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_119340294_119341157
ENSMUSG00000100490.2_39136843_39146073_1	chr7	+	744	4	NNC	ENSMUSG00000100490.2	novel	1290	3	NA	NA	-2019	-2152	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0.942809041582063	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTTTGCTTGGTGAAAT	NA	False	NA	NA	False	AATAAA	-23	NA	39136842	39146073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_39136985_39138848_39138976_39143154_39143248_39145691
ENSMUSG00000100548.2_128355307_128361739_1	chr10	+	1480	13	NIC	ENSMUSG00000100548.2	novel	425	4	NA	NA	-2825	213	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGTCCAGCTCCCCCC	NA	False	NA	NA	False	NA	NA	NA	128355306	128361739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_128355390_128355467_128355555_128355657_128355707_128356141_128356225_128356512_128356690_128356775_128356900_128357482_128357539_128357695_128357786_128357923_128357997_128358117_128358192_128358289_128358425_128358942_128358985_128361332
ENSMUSG00000100550.3_95193873_95199074_1	chr10	+	507	4	NNC	ENSMUSG00000100550.3	novel	3743	2	NA	NA	3123	3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	4.71404520791032	309	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGGAGGTTGGGAAGTC	NA	False	NA	NA	False	NA	NA	NA	95193872	95199074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_95193983_95194128_95194221_95197907_95197947_95198808
ENSMUSG00000100572.2_69582357_69584203_2	chr17	-	749	3	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	21.5	1259	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCCAGAGGAACGTATG	NA	False	NA	NA	False	NA	NA	NA	69584203	69582356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_69582887_69583120_69583191_69584054
ENSMUSG00000100572.2_69582710_69584203_1	chr17	-	396	3	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	0	-353	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	21.5	1134	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGGGAGTTTTAATTTT	NA	False	NA	NA	False	NA	NA	NA	69584203	69582709	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_69582887_69583120_69583191_69584054
ENSMUSG00000100572.2_69582710_69584203_2	chr17	-	411	3	FSM	ENSMUSG00000100572.2	ENSMUST00000187090.2	764	3	0	353	0	-353	multi-exon	FALSE	canonical	3	43	junction_1	7	1138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGGGAGTTTTAATTTT	NA	False	NA	NA	False	NA	NA	NA	69584203	69582709	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_69582902_69583120_69583191_69584054
ENSMUSG00000100599.3_99140698_99149801_1	chr15	+	1755	14	Fusion	ENSMUSG00000037579.8_ENSMUSG00000100599.3	novel	3698	15	NA	NA	4547	-1345	multi-exon	FALSE	non_canonical	0	0	junction_1	0	194	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCGGCTTCCGTGAGAC	NA	False	NA	NA	False	NA	NA	NA	99140697	99149801	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr15_+_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99149742
ENSMUSG00000100632.2_92862488_92875663_1	chr1	-	2512	12	NIC	ENSMUSG00000100632.2	novel	1689	2	NA	NA	2649	-1240	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGCAGAGCAGCCTAGCGC	4561	False	NA	NA	False	NA	NA	NA	92875663	92862487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_-_92862737_92865666_92865799_92867044_92867242_92868004_92868223_92870203_92870346_92871021_92871189_92871400_92871664_92872416_92872620_92872738_92873001_92874495_92874696_92874936_92874983_92875230
ENSMUSG00000100846.2_65148440_65149383_1	chr1	-	590	3	NNC	ENSMUSG00000044816.11	novel	594	7	NA	NA	12890	-562	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	6.5	44	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGGGAGGGAGGGAGGGA	9665	False	NA	NA	False	NA	NA	NA	65149383	65148439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_65148736_65148992_65149124_65149220
ENSMUSG00000100927.2_93549624_93563389_1	chr1	+	2043	12	Fusion	ENSMUSG00000034066.14_ENSMUSG00000100927.2	novel	3937	27	NA	NA	-13291	-842	multi-exon	FALSE	non_canonical	0	0	junction_1	0	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAGGGCGTCGTGGCGAG	NA	False	NA	NA	False	NA	NA	NA	93549623	93563389	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr1_+_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502_93553689_93553772_93553931_93554746_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
ENSMUSG00000101009.7_76915494_76924548_1	chr14	+	796	3	NIC	ENSMUSG00000101009.7	novel	857	5	NA	NA	400	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	3	172	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCCTTCACGAGTGTGT	NA	False	NA	NA	False	AATAAA	-31	NA	76915493	76924548	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_76915820_76917565_76917761_76924273
ENSMUSG00000101009.7_76915494_76924548_2	chr14	+	601	2	NIC	ENSMUSG00000101009.7	novel	857	5	NA	NA	400	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	0	197	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCCTTCACGAGTGTGT	NA	False	NA	NA	False	AATAAA	-31	NA	76915493	76924548	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_76915820_76924273
ENSMUSG00000101009.7_76915494_76924750_1	chr14	+	803	2	NIC	ENSMUSG00000101009.7	novel	1412	4	NA	NA	400	141	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	0	256	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATGGCTGCTGCTGTTTG	NA	False	NA	NA	False	ATTAAA	-23	NA	76915493	76924750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_76915820_76924273
ENSMUSG00000101144.3_82992001_83028619_1	chr9	+	1427	5	Genic_Genomic	ENSMUSG00000102882.2_ENSMUSG00000101144.3	novel	1185	2	NA	NA	-4160	-715	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGCACCTCCGCTTCCT	6090	False	NA	NA	False	NA	NA	NA	82992000	83028619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
ENSMUSG00000101144.3_82992001_83028619_2	chr9	+	864	6	Genic_Genomic	ENSMUSG00000102882.2_ENSMUSG00000101144.3	novel	1185	2	NA	NA	-4160	-715	multi-exon	FALSE	non_canonical	0	0	junction_1	0	357	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGCACCTCCGCTTCCT	6090	False	NA	NA	False	NA	NA	NA	82992000	83028619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_82992483_82993045_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
ENSMUSG00000101162.3_125437229_125471754_1	chr6	+	1214	8	NNC	ENSMUSG00000101162.3	novel	595	4	NA	NA	-34158	-1178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8788	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTGCGGAGGGATGCCG	2899	False	NA	NA	False	AAAAAG	-36	NA	125437228	125471754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_125437690_125438188_125438273_125439090_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
ENSMUSG00000101162.3_125437229_125471754_2	chr6	+	1222	8	NNC	ENSMUSG00000101162.3	novel	595	4	NA	NA	-34158	-1178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	18236	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTGCGGAGGGATGCCG	2899	False	NA	NA	False	AAAAAG	-36	NA	125437228	125471754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_125437690_125438188_125438273_125439082_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
ENSMUSG00000101162.3_125437229_125471754_3	chr6	+	1727	7	NIC	ENSMUSG00000101162.3	novel	595	4	NA	NA	-34158	-1178	intron_retention	FALSE	non_canonical	0	0	junction_1	0	515	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTGCGGAGGGATGCCG	2899	False	NA	NA	False	AAAAAG	-36	NA	125437228	125471754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
ENSMUSG00000101162.3_125437229_125471754_4	chr6	+	1205	8	NNC	ENSMUSG00000101162.3	novel	595	4	NA	NA	-34158	-1178	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1585	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTGCGGAGGGATGCCG	2899	False	NA	NA	False	AAAAAG	-36	NA	125437228	125471754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_125437690_125438211_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
ENSMUSG00000101162.3_125437229_125471754_5	chr6	+	1212	8	NNC	ENSMUSG00000101162.3	novel	595	4	NA	NA	-34158	-1178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4238	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTGCGGAGGGATGCCG	2899	False	NA	NA	False	AAAAAG	-36	NA	125437228	125471754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449459_125471536
ENSMUSG00000101162.3_125437229_125471754_6	chr6	+	1222	8	NNC	ENSMUSG00000101162.3	novel	595	4	NA	NA	-34158	-1178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	14989	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTGCGGAGGGATGCCG	2899	False	NA	NA	False	AAAAAG	-36	NA	125437228	125471754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440653_125440723_125441352_125441451_125449371_125449475_125471536
ENSMUSG00000101162.3_125437229_125471754_7	chr6	+	1212	8	NNC	ENSMUSG00000101162.3	novel	595	4	NA	NA	-34158	-1178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4033	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTGCGGAGGGATGCCG	2899	False	NA	NA	False	AAAAAG	-36	NA	125437228	125471754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441368_125441451_125449371_125449475_125471536
ENSMUSG00000101503.2_74319005_74323858_1	chr1	+	1766	11	NNC	ENSMUSG00000101503.2	novel	334	2	NA	NA	-1315	2833	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3351	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCCCTCCTCCCGGGAGG	NA	False	NA	NA	False	NA	NA	NA	74319004	74323858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322258_74322373_74323044_74323201_74323661
ENSMUSG00000101503.2_74319005_74323858_2	chr1	+	1767	11	NNC	ENSMUSG00000101503.2	novel	334	2	NA	NA	-1315	2833	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	3383	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCCCTCCTCCCGGGAGG	NA	False	NA	NA	False	NA	NA	NA	74319004	74323858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320974_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323201_74323661
ENSMUSG00000101549.2_132196005_132206195_1	chr1	-	737	4	NNC	ENSMUSG00000101549.2	novel	359	4	NA	NA	1954	6449	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_1	10.077477638554	1485	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCCACTGTAGAACAGGC	NA	False	NA	NA	False	AATAAA	-14	NA	132206195	132196004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_132196405_132202453_132202560_132202761_132202875_132206077
ENSMUSG00000101549.2_132196244_132206195_1	chr1	-	498	4	NNC	ENSMUSG00000101549.2	novel	359	4	NA	NA	1954	6210	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_1	10.077477638554	1305	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCCTTCTTAATTTCGAG	NA	False	NA	2	True	AATAAA	-20	NA	132206195	132196243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_-_132196405_132202453_132202560_132202761_132202875_132206077
ENSMUSG00000101555.2_69896786_69914651_1	chr9	-	1478	11	Genic_Genomic	ENSMUSG00000101555.2	novel	1569	1	NA	NA	-17401	-1104	multi-exon	FALSE	non_canonical	0	0	junction_1	0	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCGTACGCCCCGGCGGA	NA	False	NA	NA	False	NA	NA	NA	69914651	69896785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_-_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69911587_69911624_69914345
ENSMUSG00000101555.2_69896786_69914651_2	chr9	-	1442	10	Genic_Genomic	ENSMUSG00000101555.2	novel	1569	1	NA	NA	-17401	-1104	multi-exon	FALSE	non_canonical	0	0	junction_1	0	225	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCGTACGCCCCGGCGGA	NA	False	NA	NA	False	NA	NA	NA	69914651	69896785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_-_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69914345
ENSMUSG00000101555.2_69896786_69915539_1	chr9	-	2330	10	Genic_Genomic	ENSMUSG00000101555.2	novel	1569	1	NA	NA	-18289	-1104	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1561	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCGTACGCCCCGGCGGA	NA	False	NA	NA	False	NA	NA	NA	69915539	69896785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_-_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69914345
ENSMUSG00000101655.2_86460358_86464925_1	chr6	-	491	2	FSM	ENSMUSG00000101655.2	ENSMUST00000189386.2	775	2	284	0	261	0	multi-exon	FALSE	canonical	3	7	junction_1	0	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTGAAATTTTTTTTTA	7280	False	NA	NA	False	AATAAA	-19	NA	86464925	86460357	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_86460700_86464776
ENSMUSG00000101655.2_86460358_86465291_1	chr6	-	650	2	NIC	ENSMUSG00000101655.2	novel	775	2	NA	NA	-82	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	0	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTGAAATTTTTTTTTA	6914	False	NA	NA	False	AATAAA	-19	NA	86465291	86460357	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_86460700_86464983
ENSMUSG00000101865.2_88738809_88740859_1	chr9	+	1120	5	Genic_Genomic	ENSMUSG00000101865.2	novel	331	1	NA	NA	0	1720	multi-exon	FALSE	non_canonical	0	0	junction_1	0	553	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTTTCCCCCGCAGGTC	3126	False	NA	NA	False	NA	NA	NA	88738808	88740859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_88739637_88739866_88739925_88740278_88740354_88740442_88740498_88740755
ENSMUSG00000101865.2_88738809_88740906_1	chr9	+	1061	5	Genic_Genomic	ENSMUSG00000101865.2	novel	331	1	NA	NA	0	1767	multi-exon	FALSE	non_canonical	0	0	junction_1	0	535	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGCTGCCCCTCCCTCTGG	3126	False	NA	NA	False	NA	NA	NA	88738808	88740906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_88739637_88739866_88739925_88740278_88740354_88740442_88740498_88740861
ENSMUSG00000101878.2_116150591_116151475_1	chr6	+	631	2	Genic_Genomic	ENSMUSG00000101878.2	novel	387	1	NA	NA	-107	391	multi-exon	FALSE	canonical	3	43	junction_1	0	721	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACCAAAACACCAAATGCA	NA	False	NA	NA	False	AATAAA	-32	NA	116150590	116151475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_116150708_116150961
ENSMUSG00000101878.2_116150591_116151475_2	chr6	+	816	2	Genic_Genomic	ENSMUSG00000101878.2	novel	387	1	NA	NA	-107	391	multi-exon	FALSE	canonical	3	128	junction_1	0	1222	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACCAAAACACCAAATGCA	NA	False	NA	NA	False	AATAAA	-32	NA	116150590	116151475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_116150893_116150961
ENSMUSG00000101878.2_116150698_116151475_1	chr6	+	709	2	Genic_Genomic	ENSMUSG00000101878.2	novel	387	1	NA	NA	0	391	multi-exon	FALSE	canonical	3	128	junction_1	0	753	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACCAAAACACCAAATGCA	NA	False	NA	NA	False	AATAAA	-32	NA	116150697	116151475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_116150893_116150961
ENSMUSG00000101892.2_57885666_57897711_1	chr15	-	1418	6	NNC	ENSMUSG00000101892.2	novel	1341	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_4	316.693795329179	6473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCTCCCAGGTAATTTCA	NA	False	NA	-20	True	AATAAA	-29	NA	57897711	57885665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_57885960_57888669_57888803_57892009_57892441_57894352_57894497_57895291_57895476_57897479
ENSMUSG00000101892.2_57885666_57897711_2	chr15	-	1335	6	NNC	ENSMUSG00000101892.2	novel	1341	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	296.54719691813	6343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCTCCCAGGTAATTTCA	NA	False	NA	-20	True	AATAAA	-29	NA	57897711	57885665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_57885960_57888664_57888803_57892009_57892441_57894352_57894497_57895379_57895476_57897479
ENSMUSG00000101970.9_73193784_73207579_1	chr7	-	605	5	FSM	ENSMUSG00000101970.9	ENSMUST00000187421.7	519	5	142	-228	142	0	multi-exon	FALSE	canonical	3	58	junction_4	79.8780320238299	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCAGTTTGGGCCTTTT	NA	False	NA	-6	True	AATAAA	-19	NA	73207579	73193783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_73194131_73199344_73199401_73205002_73205082_73205602_73205669_73207522
ENSMUSG00000101970.9_73193784_73207895_1	chr7	-	657	5	FSM	ENSMUSG00000101970.9	ENSMUST00000184587.5	5140	5	248	4235	0	0	multi-exon	FALSE	canonical	3	140	junction_4	46.3384289763906	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCAGTTTGGGCCTTTT	NA	False	NA	-6	True	AATAAA	-19	NA	73207895	73193783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_73194131_73199344_73199401_73205002_73205082_73205602_73205669_73207786
ENSMUSG00000102047.2_75421726_75428427_1	chr18	-	593	2	NNC	ENSMUSG00000102047.2	novel	650	2	NA	NA	1961	0	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	0	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAACCTGCTGTCTC	NA	False	NA	NA	False	AATAAA	-32	NA	75428427	75421725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_75422241_75428349
ENSMUSG00000102135.2_6986783_6993866_1	chr1	+	681	2	NNC	ENSMUSG00000102135.2	novel	626	2	NA	NA	0	54	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2982	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGGTGACAGCAGATACT	NA	False	NA	NA	False	AATAAA	-33	NA	6986782	6993866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_6987235_6993637
ENSMUSG00000102252.6_59632862_59654859_1	chr7	-	1306	10	NNC	ENSMUSG00000102252.6	novel	1932	10	NA	NA	0	-612	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	645.515546666116	7107	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGGTTTTTCTTTGTCTG	NA	False	NA	-9	True	AATAAA	-18	NA	59654859	59632861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636625_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59654783
ENSMUSG00000102252.6_59632862_59654859_2	chr7	-	1313	10	FSM	ENSMUSG00000102252.6	ENSMUST00000059305.17	1932	10	0	619	0	-612	multi-exon	FALSE	canonical	3	1774	junction_5	121.666210044805	8091	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGGTTTTTCTTTGTCTG	NA	False	NA	-9	True	AATAAA	-18	NA	59654859	59632861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59654783
ENSMUSG00000102457.2_16634562_16689492_1	chr1	+	590	6	Genic_Genomic	ENSMUSG00000102457.2	novel	2980	1	NA	NA	-54222	-2271	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCCAGCGAGGCCCGAGA	NA	False	NA	NA	False	NA	NA	NA	16634561	16689492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_16634693_16652150_16652227_16655499_16655656_16668174_16668278_16672485_16672578_16689460
ENSMUSG00000102457.2_16640357_16689492_1	chr1	+	1506	5	Genic_Genomic	ENSMUSG00000102457.2	novel	2980	1	NA	NA	-48427	-2271	multi-exon	FALSE	non_canonical	0	0	junction_1	0	558	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCCAGCGAGGCCCGAGA	NA	False	NA	NA	False	NA	NA	NA	16640356	16689492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_+_16641507_16652150_16652227_16655499_16655656_16672485_16672578_16689460
ENSMUSG00000102595.2_82915168_82922356_1	chr3	-	1558	10	Genic_Genomic	ENSMUSG00000102595.2	novel	447	4	NA	NA	-6561	-81094	multi-exon	TRUE	non_canonical	0	0	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTCTTGGGCTTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	82922356	82915167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_82915290_82915459_82915505_82915680_82915865_82915954_82916049_82917370_82917502_82917762_82917897_82918651_82918837_82920070_82920349_82921444_82921615_82922141
ENSMUSG00000102644.6_92097144_92110610_1	chr5	+	1255	8	NNC	ENSMUSG00000102644.6	novel	1337	5	NA	NA	-13104	-3847	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCAGCCACTGAACCTTTC	NA	False	NA	NA	False	NA	NA	NA	92097143	92110610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_92097724_92099679_92099801_92100898_92100971_92101072_92101118_92103393_92103473_92105393_92105510_92105736_92105857_92110488
ENSMUSG00000102797.2_72866067_72880114_1	chr9	-	1743	9	Genic_Genomic	ENSMUSG00000102797.2	novel	1274	1	NA	NA	726	13500	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGCCCTTAGGGTCCTTCC	NA	False	NA	NA	False	NA	NA	NA	72880114	72866066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_-_72866280_72867863_72868012_72868539_72868674_72869196_72869423_72871372_72871519_72872450_72872561_72876313_72876468_72879254_72879361_72879608
ENSMUSG00000102824.2_189009505_189010042_1	chr1	-	446	2	Genic_Genomic	ENSMUSG00000102824.2	novel	381	1	NA	NA	-22	135	multi-exon	FALSE	non_canonical	0	0	junction_1	0	770	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGGGTTTTGTTATTAG	NA	False	NA	NA	False	AATAAA	-34	NA	189010042	189009504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_-_189009763_189009854
ENSMUSG00000102840.2_191553622_191565162_1	chr1	-	3161	8	Genic_Genomic	ENSMUSG00000102840.2	novel	1624	1	NA	NA	-11057	-1140	multi-exon	FALSE	non_canonical	0	0	junction_1	0	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGCGGGCTTCGGCCTCGC	746	False	NA	NA	False	NA	NA	NA	191565162	191553621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_-_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261_191559482_191561503_191561630_191563248
ENSMUSG00000103341.2_86135388_86159443_1	chr8	+	1568	4	Genic_Genomic	ENSMUSG00000103341.2	novel	630	1	NA	NA	-23927	-501	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2709	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCGCGTGCGCGTGCGCGG	NA	False	NA	NA	False	NA	NA	NA	86135387	86159443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_+_86136520_86138741_86138925_86153488_86153586_86159287
ENSMUSG00000103380.2_171910372_171949897_1	chr1	-	4351	33	Genic_Genomic	ENSMUSG00000103380.2	novel	942	2	NA	NA	-29651	7105	multi-exon	FALSE	non_canonical	0	0	junction_1	0	326	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCGGACAAGGACTTCCG	NA	False	NA	NA	False	NA	NA	NA	171949897	171910371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr1_-_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
ENSMUSG00000103409.3_107464925_107470237_1	chr9	-	1972	12	NIC	ENSMUSG00000103409.3	novel	1424	4	NA	NA	1387	4904	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1556	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGTCAAATGGGTCGCT	NA	False	NA	NA	False	NA	NA	NA	107470237	107464924	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
ENSMUSG00000103409.3_107464956_107470237_1	chr9	-	1938	12	NNC	ENSMUSG00000103409.3	novel	1424	4	NA	NA	1387	4873	intron_retention	FALSE	non_canonical	0	0	junction_1	0	979	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGCGCGCCACCATCTTCG	NA	False	NA	NA	False	NA	NA	NA	107470237	107464955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_107465150_107467108_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
ENSMUSG00000103469.2_105824528_105834971_1	chr11	+	2753	7	Genic_Genomic	ENSMUSG00000103469.2	novel	1550	1	NA	NA	-10002	-1108	multi-exon	FALSE	non_canonical	0	0	junction_1	0	193	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCCGCGCCCCGGACGCTC	NA	False	NA	NA	False	NA	NA	NA	105824527	105834971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr11_+_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105830925_105831205_105834936
ENSMUSG00000103469.2_105824528_105834971_2	chr11	+	2474	6	Genic_Genomic	ENSMUSG00000103469.2	novel	1550	1	NA	NA	-10002	-1108	multi-exon	FALSE	non_canonical	0	0	junction_1	0	166	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCCGCGCCCCGGACGCTC	NA	False	NA	NA	False	NA	NA	NA	105824527	105834971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr11_+_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105834936
ENSMUSG00000103481.2_3726903_3759011_1	chr16	-	1565	12	Genic_Genomic	ENSMUSG00000085048.2_ENSMUSG00000103481.2	novel	485	3	NA	NA	-11790	-182	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGCCTTGGACAGCGTGC	NA	False	NA	NA	False	NA	NA	NA	3759011	3726902	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_-_3727018_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741703_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755422_3755479_3758631
ENSMUSG00000103730.2_51181963_51189469_1	chr14	-	1332	6	NNC	ENSMUSG00000103730.2	novel	469	2	NA	NA	-8	6053	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1337	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCACTATTCGCTGGGCC	9474	False	NA	NA	False	NA	NA	NA	51189469	51181962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_51182051_51185308_51185479_51187720_51187819_51187999_51188176_51188288_51188480_51188860
ENSMUSG00000103730.2_51181963_51189469_2	chr14	-	1330	6	NIC	ENSMUSG00000103730.2	novel	469	2	NA	NA	-8	6053	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1342	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCACTATTCGCTGGGCC	9474	False	NA	NA	False	NA	NA	NA	51189469	51181962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_-_51182051_51185308_51185479_51187714_51187819_51187999_51188176_51188296_51188480_51188860
ENSMUSG00000103766.6_88186748_88204203_1	chr3	-	544	5	Fusion	ENSMUSG00000010538.15_ENSMUSG00000103766.6	novel	600	2	NA	NA	0	3316	multi-exon	FALSE	canonical	3	15	junction_1	78.2719617743161	194	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCCACCTCTGCCTGG	NA	False	NA	NA	False	NA	NA	NA	88204203	88186747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr3_-_88186818_88187238_88187460_88194404_88194525_88202697_88202758_88204130
ENSMUSG00000103864.2_124531013_124563647_1	chr5	+	2512	18	Genic_Genomic	ENSMUSG00000103864.2	novel	2054	1	NA	NA	-31747	-1166	multi-exon	FALSE	non_canonical	0	0	junction_1	0	464	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCCCTCCCCCCGACCC	298	False	NA	NA	False	NA	NA	NA	124531012	124563647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_+_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563509
ENSMUSG00000104208.2_108183638_108214609_2	chr9	-	1038	4	NNC	ENSMUSG00000104208.2	novel	347	2	NA	NA	863	30650	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	215	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGACGGAGGACCGCGGGC	NA	False	NA	NA	False	NA	NA	NA	108214609	108183637	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_108183753_108192506_108192536_108212249_108212381_108213846
ENSMUSG00000104340.2_170806381_170811843_1	chr1	+	527	3	NNC	ENSMUSG00000104340.2	novel	1163	3	NA	NA	-3132	-2192	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	0.5	123	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTGTCATTAAAGACTAG	NA	False	NA	NA	False	NA	NA	NA	170806380	170811843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_170806474_170811302_170811532_170811638
ENSMUSG00000104444.2_28859659_28861571_1	chr3	-	485	4	NIC	ENSMUSG00000104444.2	novel	274	2	NA	NA	6563	1695	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	83158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGGCTTGCGCCGCACGCA	NA	False	NA	NA	False	NA	NA	NA	28861571	28859658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_28859693_28860648_28860742_28860885_28861008_28861335
ENSMUSG00000104453.2_81173319_81181250_1	chr7	-	780	4	Genic_Genomic	ENSMUSG00000104453.2	novel	2213	1	NA	NA	1019	6738	multi-exon	FALSE	non_canonical	0	0	junction_1	0	662	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTTCCGGTGGAAAATGA	NA	False	NA	NA	False	NA	NA	NA	81181250	81173318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_81173472_81178534_81178689_81179094_81179276_81180958
ENSMUSG00000104529.5_143150534_143151512_1	chr5	-	605	3	NNC	ENSMUSG00000104529.5	novel	520	3	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	8	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTCGCCTCCTATTC	3471	False	NA	0	True	AATAAA	-19	NA	143151512	143150533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_143150848_143151105_143151305_143151420
ENSMUSG00000104529.5_143150534_143151512_2	chr5	-	533	3	NNC	ENSMUSG00000104529.5	novel	520	3	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	23.5	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTCGCCTCCTATTC	3471	False	NA	0	True	AATAAA	-19	NA	143151512	143150533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_143150848_143151184_143151292_143151400
ENSMUSG00000104529.5_143150534_143151512_3	chr5	-	613	3	NNC	ENSMUSG00000104529.5	novel	520	3	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	8	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTCGCCTCCTATTC	3471	False	NA	0	True	AATAAA	-19	NA	143151512	143150533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_143150848_143151105_143151305_143151412
ENSMUSG00000104529.5_143150534_143151512_4	chr5	-	534	3	NNC	ENSMUSG00000104529.5	novel	520	3	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	23.5	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTCGCCTCCTATTC	3471	False	NA	0	True	AATAAA	-19	NA	143151512	143150533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_143150848_143151184_143151305_143151412
ENSMUSG00000104535.2_8783288_8797929_1	chr5	-	1736	6	Genic_Genomic	ENSMUSG00000104535.2	novel	4108	1	NA	NA	-12161	-1627	multi-exon	TRUE	non_canonical	0	0	junction_1	0	66	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGAGTAGGACACCTCCC	NA	False	NA	NA	False	NA	NA	NA	8797929	8783287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_-_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
ENSMUSG00000104535.2_8783288_8798570_1	chr5	-	2377	6	Genic_Genomic	ENSMUSG00000104535.2	novel	4108	1	NA	NA	-12802	-1627	multi-exon	FALSE	non_canonical	0	0	junction_1	0	652	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGAGTAGGACACCTCCC	NA	False	NA	NA	False	NA	NA	NA	8798570	8783287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_-_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
ENSMUSG00000104686.2_138604382_138618000_2	chr5	+	2252	6	Genic_Genomic	ENSMUSG00000104686.2_ENSMUSG00002075951.1	novel	83	1	NA	NA	-579	-1019	multi-exon	FALSE	non_canonical	0	0	junction_1	0	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGACCGGTGACAGCCAAA	NA	False	NA	NA	False	NA	NA	NA	138604381	138618000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_+_138606084_138610085_138610176_138610300_138610428_138614731_138614822_138615316_138615430_138617870
ENSMUSG00000105004.2_97468058_97517508_1	chr3	+	2973	23	Genic_Genomic	ENSMUSG00000105004.2	novel	3905	1	NA	NA	-49190	-3644	multi-exon	TRUE	non_canonical	0	0	junction_1	0	306	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCCGCGCGTGCGGAGTA	NA	False	NA	NA	False	NA	NA	NA	97468057	97517508	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_+_97468404_97469894_97470004_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
ENSMUSG00000105004.2_97479720_97517508_1	chr3	+	2023	16	Genic_Genomic	ENSMUSG00000105004.2	novel	3905	1	NA	NA	-37528	-3644	multi-exon	FALSE	non_canonical	0	0	junction_1	0	88	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCCGCGCGTGCGGAGTA	NA	False	NA	NA	False	NA	NA	NA	97479719	97517508	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_+_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
ENSMUSG00000105039.2_125315378_125317330_1	chr5	-	535	3	NNC	ENSMUSG00000105039.2	novel	764	4	NA	NA	32549	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	0.5	36	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCCTGTTGGCTTTAA	9030	False	NA	NA	False	AATAAA	-35	NA	125317330	125315377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_125315796_125316932_125317002_125317282
ENSMUSG00000105255.2_45591395_45607529_1	chr5	+	1331	7	NIC	ENSMUSG00000105255.2	novel	338	2	NA	NA	-336	49	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	6595	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGGTTGCCCAGAACAC	NA	False	NA	NA	False	NA	NA	NA	45591394	45607529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607348
ENSMUSG00000105255.2_45591395_45607529_2	chr5	+	1248	7	NIC	ENSMUSG00000105255.2	novel	338	2	NA	NA	-336	49	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1272	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGGTTGCCCAGAACAC	NA	False	NA	NA	False	NA	NA	NA	45591394	45607529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607431
ENSMUSG00000105255.2_45591395_45607529_3	chr5	+	1326	7	NNC	ENSMUSG00000105255.2	novel	338	2	NA	NA	-336	49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5500	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGGTTGCCCAGAACAC	NA	False	NA	NA	False	NA	NA	NA	45591394	45607529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_45592021_45595189_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607348
ENSMUSG00000105260.2_41432012_41447627_1	chr3	-	842	4	Fusion	ENSMUSG00000105260.2_ENSMUSG00000097639.3	novel	305	2	NA	NA	0	0	multi-exon	FALSE	canonical	3	51	junction_3	13.2748718344933	1593	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	-10	True	AGTAAA	-16	NA	41447627	41432011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr3_-_41432228_41436231_41436380_41436506_41436880_41447522
ENSMUSG00000105260.2_41432012_41447627_2	chr3	-	1210	4	Fusion	ENSMUSG00000105260.2_ENSMUSG00000097639.3	novel	504	2	NA	NA	0	0	multi-exon	FALSE	canonical	3	17	junction_1	26.5455583227527	1301	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	-10	True	AGTAAA	-16	NA	41447627	41432011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr3_-_41432596_41436231_41436380_41436506_41436880_41447522
ENSMUSG00000105260.2_41432252_41447627_1	chr3	-	970	4	Fusion	ENSMUSG00000105260.2_ENSMUSG00000097639.3	novel	504	2	NA	NA	0	-240	multi-exon	FALSE	canonical	3	17	junction_1	26.5455583227527	1036	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGACTTTTATCTCTTT	NA	False	NA	NA	False	CATAAA	-28	NA	41447627	41432251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr3_-_41432596_41436231_41436380_41436506_41436880_41447522
ENSMUSG00000105471.2_109916703_109944164_1	chr5	-	1089	3	NNC	ENSMUSG00000105471.2	novel	665	2	NA	NA	0	570	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7	127	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTGGCAAAGCTTCTTC	NA	False	NA	NA	False	NA	NA	NA	109944164	109916702	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_109917118_109917263_109917822_109944048
ENSMUSG00000105692.2_89116394_89121214_1	chr3	+	1535	7	Genic_Genomic	ENSMUSG00000105692.2	novel	2740	1	NA	NA	-1338	743	multi-exon	TRUE	non_canonical	0	0	junction_1	0	192	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCGGAAGCACCTTCTCG	NA	False	NA	NA	False	NA	NA	NA	89116393	89121214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_+_89116729_89116811_89117491_89117572_89117756_89117890_89117984_89119989_89120070_89120183_89120254_89121119
ENSMUSG00000105692.2_89116394_89121214_3	chr3	+	1083	8	Genic_Genomic	ENSMUSG00000105692.2	novel	2740	1	NA	NA	-1338	743	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5408	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCGGAAGCACCTTCTCG	NA	False	NA	NA	False	NA	NA	NA	89116393	89121214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_+_89116724_89116811_89116967_89117413_89117491_89117572_89117756_89117890_89117984_89119989_89120070_89120183_89120254_89121119
ENSMUSG00000105692.2_89116394_89121214_4	chr3	+	1202	7	Genic_Genomic	ENSMUSG00000105692.2	novel	2740	1	NA	NA	-1338	743	multi-exon	FALSE	non_canonical	0	0	junction_1	0	520	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCGGAAGCACCTTCTCG	NA	False	NA	NA	False	NA	NA	NA	89116393	89121214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_+_89116729_89116811_89116967_89117413_89117491_89117572_89117756_89117890_89117984_89119989_89120254_89121119
ENSMUSG00000105692.2_89116394_89121214_5	chr3	+	1082	8	Genic_Genomic	ENSMUSG00000105692.2	novel	2740	1	NA	NA	-1338	743	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4326	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCGGAAGCACCTTCTCG	NA	False	NA	NA	False	NA	NA	NA	89116393	89121214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_+_89116729_89116811_89116967_89117413_89117491_89117572_89117756_89117896_89117984_89119989_89120070_89120183_89120254_89121119
ENSMUSG00000105692.2_89116394_89121214_6	chr3	+	1079	8	Genic_Genomic	ENSMUSG00000105692.2	novel	2740	1	NA	NA	-1338	743	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1976	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCGGAAGCACCTTCTCG	NA	False	NA	NA	False	NA	NA	NA	89116393	89121214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_+_89116729_89116811_89116967_89117413_89117491_89117572_89117756_89117890_89117981_89119989_89120070_89120183_89120254_89121125
ENSMUSG00000105813.2_121220146_121251599_1	chr3	-	1779	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30376	-2261	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1120	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACCCCCGGGCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	121251599	121220145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250743
ENSMUSG00000105813.2_121220146_121251599_2	chr3	-	1786	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30376	-2261	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1187	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACCCCCGGGCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	121251599	121220145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_121220478_121243597_121243720_121243940_121244008_121245037_121245170_121245531_121245649_121248595_121248743_121250730
ENSMUSG00000105813.2_121220146_121251599_6	chr3	-	1787	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30376	-2261	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1408	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACCCCCGGGCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	121251599	121220145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_121220478_121243597_121243720_121243940_121244008_121245031_121245165_121245531_121245649_121248595_121248743_121250730
ENSMUSG00000105813.2_121220146_121251599_7	chr3	-	1784	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30376	-2261	multi-exon	FALSE	non_canonical	0	0	junction_1	0	832	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACCCCCGGGCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	121251599	121220145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245641_121248595_121248743_121250730
ENSMUSG00000105813.2_121220146_121251599_8	chr3	-	1786	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30376	-2261	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1766	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACCCCCGGGCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	121251599	121220145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_121220478_121243597_121243714_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
ENSMUSG00000105813.2_121220146_121251848_1	chr3	-	2036	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30625	-2261	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4550	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACCCCCGGGCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	121251848	121220145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_121220478_121243597_121243720_121243940_121244008_121245031_121245165_121245531_121245649_121248595_121248743_121250730
ENSMUSG00000105813.2_121220146_121251848_2	chr3	-	2033	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30625	-2261	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2601	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACCCCCGGGCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	121251848	121220145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245641_121248595_121248743_121250730
ENSMUSG00000105813.2_121220146_121251848_3	chr3	-	2035	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30625	-2261	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4077	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACCCCCGGGCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	121251848	121220145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_121220478_121243597_121243720_121243940_121244008_121245037_121245170_121245531_121245649_121248595_121248743_121250730
ENSMUSG00000105813.2_121220146_121251848_4	chr3	-	2028	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30625	-2261	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3039	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACCCCCGGGCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	121251848	121220145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250743
ENSMUSG00000105813.2_121220146_121251848_6	chr3	-	2035	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30625	-2261	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4666	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACCCCCGGGCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	121251848	121220145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_121220478_121243597_121243714_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
ENSMUSG00000105813.2_121220146_121251848_8	chr3	-	2403	6	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30625	-2261	multi-exon	FALSE	non_canonical	0	0	junction_1	0	957	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACCCCCGGGCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	121251848	121220145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr3_-_121220478_121243597_121243720_121243940_121244008_121245031_121245649_121248595_121248743_121250730
ENSMUSG00000105837.5_129321116_129325821_1	chr3	-	605	3	NNC	ENSMUSG00000105837.5	novel	655	3	NA	NA	-63	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	0	130	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGAACCCATTTTTTTC	6898	False	NA	NA	False	AATAAA	-8	NA	129325821	129321115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_129321464_129324707_129324814_129325670
ENSMUSG00000105837.5_129321116_129325821_2	chr3	-	536	3	NNC	ENSMUSG00000105837.5	novel	655	3	NA	NA	-63	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	10	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGAACCCATTTTTTTC	6898	False	NA	NA	False	AATAAA	-8	NA	129325821	129321115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_129321464_129324707_129324814_129325739
ENSMUSG00000105837.5_129326035_129428620_2	chr3	-	2427	5	NIC	ENSMUSG00000105837.5	novel	421	3	NA	NA	-102583	-4754	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTTTTTACTCGTCTACA	NA	False	NA	NA	False	AATGAA	-37	NA	129428620	129326034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_129326145_129326296_129326418_129398689_129398822_129421931_129422084_129426708
ENSMUSG00000105837.5_129326035_129428768_1	chr3	-	2575	5	NIC	ENSMUSG00000105837.5	novel	421	3	NA	NA	-102731	-4754	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTTTTTACTCGTCTACA	NA	False	NA	NA	False	AATGAA	-37	NA	129428768	129326034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_129326145_129326296_129326418_129398689_129398822_129421931_129422084_129426708
ENSMUSG00000105960.2_129551568_129555540_1	chr3	+	473	2	ISM	ENSMUSG00000105960.2	ENSMUST00000199846.2	3871	5	4161	1993	4161	-1993	3prime_fragment	FALSE	canonical	3	92	junction_1	0	319	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGTAATGGGATCCCTGT	NA	False	NA	8	True	NA	NA	NA	129551567	129555540	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_+_129551788_129555287
ENSMUSG00000105987.5_23903294_23917664_1	chr5	-	2281	4	FSM	ENSMUSG00000105987.5	ENSMUST00000198984.5	345	4	-4	-1932	0	0	multi-exon	FALSE	canonical	2	2	junction_3	6.68331255192114	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTCTAGTCTGAGGTCT	5257	False	NA	NA	False	NA	NA	NA	23917664	23903293	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_23905472_23915363_23915407_23916113_23916149_23917639
ENSMUSG00000105987.5_23904560_23917664_1	chr5	-	1015	4	FSM	ENSMUSG00000105987.5	ENSMUST00000198984.5	345	4	-4	-666	0	-492	multi-exon	FALSE	canonical	2	2	junction_3	6.68331255192114	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAATATTTGAATATAAT	5257	False	NA	NA	False	AATAAA	-3	NA	23917664	23904559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_23905472_23915363_23915407_23916113_23916149_23917639
ENSMUSG00000106035.2_104194735_104213245_1	chr5	-	1221	8	Genic_Genomic	ENSMUSG00000106035.2	novel	2779	1	NA	NA	-17982	-2250	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1004	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCTTTACGGCCACGCC	NA	False	NA	NA	False	NA	NA	NA	104213245	104194734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_-_104194746_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
ENSMUSG00000106218.2_88742538_88761939_1	chr3	-	1266	4	NIC	ENSMUSG00000106218.2	novel	1896	2	NA	NA	45369	9794	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	153	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGCACCGGCTGACGTGC	310	False	NA	NA	False	NA	NA	NA	88761939	88742537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_88743050_88744296_88744828_88753694_88753887_88761908
ENSMUSG00000106218.2_88742538_88761939_3	chr3	-	813	4	NIC	ENSMUSG00000106218.2	novel	1896	2	NA	NA	45369	9794	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	150	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGCACCGGCTGACGTGC	310	False	NA	NA	False	NA	NA	NA	88761939	88742537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr3_-_88742597_88744296_88744828_88753694_88753887_88761908
ENSMUSG00000106223.2_41461644_41482880_1	chr3	-	847	5	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-1	14038	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	37.1374137494791	1059	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTTGGTCATGGTGTC	NA	False	NA	1	True	NA	NA	NA	41482880	41461643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41477364_41477680_41482833
ENSMUSG00000106223.2_41461644_41482880_2	chr3	-	833	5	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-1	14038	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	46.618129520606	1060	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTTGGTCATGGTGTC	NA	False	NA	1	True	NA	NA	NA	41482880	41461643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41477378_41477680_41482833
ENSMUSG00000106223.2_41476397_41482880_1	chr3	-	727	3	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-1	242	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_2	22	514	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAACATTCAATTGCTTC	NA	False	NA	NA	False	AATAAA	-20	NA	41482880	41476396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_41476891_41477378_41477565_41482833
ENSMUSG00000106223.2_41476639_41482880_1	chr3	-	499	3	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	5.5	466	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGACTTGTTTAACTATT	NA	False	NA	-2	True	AATAAA	-27	NA	41482880	41476638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_41476891_41477364_41477565_41482833
ENSMUSG00000106223.2_41476639_41482880_2	chr3	-	299	2	ISM	ENSMUSG00000106223.2	ENSMUST00000198272.2	474	3	-1	957	-1	0	5prime_fragment	FALSE	canonical	3	29	junction_1	0	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGACTTGTTTAACTATT	NA	False	NA	-2	True	AATAAA	-27	NA	41482880	41476638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr3_-_41476891_41482833
ENSMUSG00000106223.2_41476639_41482880_3	chr3	-	520	4	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	36.5543735033473	371	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGACTTGTTTAACTATT	NA	False	NA	-2	True	AATAAA	-27	NA	41482880	41476638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_41476891_41477364_41477565_41477658_41477680_41482833
ENSMUSG00000106223.2_41476639_41482880_4	chr3	-	485	3	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_2	22	450	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGACTTGTTTAACTATT	NA	False	NA	-2	True	AATAAA	-27	NA	41482880	41476638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_41476891_41477378_41477565_41482833
ENSMUSG00000106223.2_41476639_41482880_5	chr3	-	627	3	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	66	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGACTTGTTTAACTATT	NA	False	NA	-2	True	AATAAA	-27	NA	41482880	41476638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr3_-_41476891_41477378_41477707_41482833
ENSMUSG00000106567.2_18854596_18925646_1	chr16	+	597	3	NNC	ENSMUSG00000106567.2	novel	458	4	NA	NA	-15521	147	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.5	216	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACATCTTCCTTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	18854595	18925646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_18854906_18918001_18918098_18925455
ENSMUSG00000106588.2_3522968_3571069_1	chr5	-	765	5	NNC	ENSMUSG00000106588.2	novel	1232	2	NA	NA	-40196	103	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	62	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGGCCAGGAAATTGCAT	NA	False	NA	NA	False	NA	NA	NA	3571069	3522967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_3523011_3523118_3523229_3565453_3565505_3569358_3569495_3570644
ENSMUSG00000106617.2_137610765_137612024_1	chr5	+	707	2	NIC	ENSMUSG00000106617.2	novel	1749	2	NA	NA	-349	-1485	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAAATCCGAGGTCTGAC	368	False	NA	NA	False	NA	NA	NA	137610764	137612024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_137611382_137611934
ENSMUSG00000106631.3_107696888_107745469_1	chr5	+	1924	19	Fusion	ENSMUSG00000033773.15_ENSMUSG00000089798.11	novel	2992	12	NA	NA	14265	-4194	multi-exon	FALSE	non_canonical	0	0	junction_1	0	712	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCACTCCTGGCCCCGCC	8719	False	NA	NA	False	NA	NA	NA	107696887	107745469	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr5_+_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653_107744729_107745409
ENSMUSG00000106674.2_149565075_149572328_1	chr5	+	1372	2	FSM	ENSMUSG00000106674.2	ENSMUST00000202583.2	299	2	0	-1073	0	1073	multi-exon	FALSE	canonical	3	13	junction_1	0	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTTTGAGTCCTGGG	NA	False	NA	5	True	NA	NA	NA	149565074	149572328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_149565217_149571098
ENSMUSG00000106698.2_92434600_92438195_1	chr5	+	647	5	NIC	ENSMUSG00000106698.2	novel	528	2	NA	NA	-3311	-12424	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	78	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCTTTCCCATCCATCTGT	NA	False	NA	NA	False	NA	NA	NA	92434599	92438195	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_92434730_92436325_92436488_92437598_92437684_92437779_92437971_92438116
ENSMUSG00000106698.2_92434600_92457848_1	chr5	+	2254	22	NIC	ENSMUSG00000106698.2	novel	528	2	NA	NA	-3311	7229	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	334	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAACGGCACGTGGGACAC	NA	False	NA	NA	False	NA	NA	NA	92434599	92457848	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_92434730_92436325_92436488_92437598_92437684_92437779_92437971_92438116_92438212_92438871_92438999_92439565_92439643_92439744_92439843_92440511_92440589_92441821_92441881_92443869_92443928_92444978_92445083_92446050_92446121_92447920_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
ENSMUSG00000106698.2_92447921_92457848_1	chr5	+	921	9	Genic_Genomic	ENSMUSG00000106698.2	novel	528	2	NA	NA	10010	7229	multi-exon	FALSE	non_canonical	0	0	junction_1	0	136	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAACGGCACGTGGGACAC	NA	False	NA	NA	False	NA	NA	NA	92447920	92457848	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_+_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
ENSMUSG00000106834.2_33797399_33809664_1	chr5	+	1645	8	Genic_Genomic	ENSMUSG00000106834.2	novel	1155	1	NA	NA	-12046	-935	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2936	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCGCCTTGCCCAACCG	NA	False	NA	NA	False	NA	NA	NA	33797398	33809664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_+_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809545
ENSMUSG00000106834.2_33797399_33809664_2	chr5	+	1592	7	Genic_Genomic	ENSMUSG00000106834.2	novel	1155	1	NA	NA	-12046	-935	multi-exon	FALSE	non_canonical	0	0	junction_1	0	381	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCGCCTTGCCCAACCG	NA	False	NA	NA	False	NA	NA	NA	33797398	33809664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_+_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33807086_33807192_33809306_33809424_33809538
ENSMUSG00000106834.2_33797399_33809664_3	chr5	+	1547	7	Genic_Genomic	ENSMUSG00000106834.2	novel	1155	1	NA	NA	-12046	-935	multi-exon	FALSE	non_canonical	0	0	junction_1	0	401	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCGCCTTGCCCAACCG	NA	False	NA	NA	False	NA	NA	NA	33797398	33809664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_+_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33809306_33809424_33809538
ENSMUSG00000106894.2_31855350_32242306_1	chr5	-	1491	11	NIC	ENSMUSG00000106894.2	novel	2683	3	NA	NA	-74099	307971	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCGACCTGCGCGCGAAC	NA	False	NA	NA	False	NA	NA	NA	32242306	31855349	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
ENSMUSG00000106918.4_31771316_31779988_1	chr5	+	434	3	NNC	ENSMUSG00000106918.4	novel	478	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1166.5	9632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTCTTAGAGGTAT	NA	False	NA	19	True	AATAAA	-22	NA	31771315	31779988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_+_31771375_31773724_31773832_31779720
ENSMUSG00000106918.4_31771316_31779988_2	chr5	+	426	3	NIC	ENSMUSG00000106918.4	novel	478	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_1	1111.5	9157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTCTTAGAGGTAT	NA	False	NA	19	True	AATAAA	-22	NA	31771315	31779988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_+_31771367_31773724_31773832_31779720
ENSMUSG00000106967.2_4826594_4831394_1	chr16	+	1916	10	Genic_Genomic	ENSMUSG00000106967.2	novel	469	3	NA	NA	360	112	multi-exon	FALSE	non_canonical	0	0	junction_1	0	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCTGTAGTCAGGAGCT	NA	False	NA	NA	False	NA	NA	NA	4826593	4831394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4830160_4830290_4830374_4831166_4831239_4831326
ENSMUSG00000106967.2_4826594_4831394_2	chr16	+	1368	11	Genic_Genomic	ENSMUSG00000106967.2	novel	469	3	NA	NA	360	112	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1876	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCTGTAGTCAGGAGCT	NA	False	NA	NA	False	NA	NA	NA	4826593	4831394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831239_4831326
ENSMUSG00000106968.2_74103724_74106610_1	chr5	+	1739	2	FSM	ENSMUSG00000106968.2	ENSMUST00000202711.2	848	2	0	-891	0	891	multi-exon	FALSE	canonical	3	15	junction_1	0	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGACTTTTATGTTGTTG	NA	False	NA	NA	False	AATACA	-17	NA	74103723	74106610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_74103968_74105115
ENSMUSG00000107078.2_32510913_32521698_1	chr5	-	772	5	Genic_Genomic	ENSMUSG00000107078.2	novel	250	2	NA	NA	-9471	-32805	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTTTTTGTCCACATGG	NA	False	NA	NA	False	AAGAAA	-43	NA	32521698	32510912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_-_32511049_32512129_32512235_32512660_32512757_32519870_32519946_32521338
ENSMUSG00000107111.2_53703523_53704664_1	chr5	-	438	3	FSM	ENSMUSG00000107111.2	ENSMUST00000202154.2	268	3	0	-170	0	170	multi-exon	FALSE	canonical	0	0	junction_2	0.5	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATATGCATTTAATCCCAG	2897	False	NA	NA	False	NA	NA	NA	53704664	53703522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_53703801_53703968_53704074_53704609
ENSMUSG00000107142.2_31643977_31646495_1	chr5	-	1425	2	NNC	ENSMUSG00000107142.2	novel	1535	2	NA	NA	-1203	0	intron_retention	FALSE	canonical	3	94	junction_1	0	555	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTTGGTTATGTCTTT	719	False	NA	-2	True	NA	NA	NA	31646495	31643976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_31645334_31646427
ENSMUSG00000107142.2_31643977_31646495_2	chr5	-	397	3	NNC	ENSMUSG00000107142.2	novel	420	2	NA	NA	-1203	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	59.5	97	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTTGGTTATGTCTTT	719	False	NA	-2	True	NA	NA	NA	31646495	31643976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_31644077_31644976_31645206_31646427
ENSMUSG00000107142.2_31643977_31646495_3	chr5	-	1297	2	NNC	ENSMUSG00000107142.2	novel	1535	2	NA	NA	-1203	0	intron_retention	FALSE	canonical	3	124	junction_1	0	426	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTTGGTTATGTCTTT	719	False	NA	-2	True	NA	NA	NA	31646495	31643976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_31645206_31646427
ENSMUSG00000107142.2_31643977_31646495_4	chr5	-	449	3	NNC	ENSMUSG00000107142.2	novel	1535	2	NA	NA	-1203	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	61.5	140	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTTGGTTATGTCTTT	719	False	NA	-2	True	NA	NA	NA	31646495	31643976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr5_-_31644119_31644966_31645206_31646427
ENSMUSG00000107181.2_42727475_42746945_1	chr7	+	511	4	NNC	ENSMUSG00000107181.2	novel	378	4	NA	NA	0	1102	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_3	9.20144916122817	113	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATGTAATCAATGTGAT	NA	False	NA	NA	False	NA	NA	NA	42727474	42746945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_42727598_42741712_42741840_42742038_42742100_42746745
ENSMUSG00000107230.2_85924326_85938625_1	chr6	+	1335	9	NIC	ENSMUSG00000107230.2	novel	894	3	NA	NA	-14279	-40283	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1233	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGCGACGCGTCGACGTCT	8533	False	NA	NA	False	NA	NA	NA	85924325	85938625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_85924759_85926599_85926780_85926999_85927076_85927495_85927543_85929286_85929348_85930352_85930477_85935565_85935698_85936197_85936274_85938419
ENSMUSG00000107230.2_85924494_85938625_1	chr6	+	1167	9	NIC	ENSMUSG00000107230.2	novel	894	3	NA	NA	-14111	-40283	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1063	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGCGACGCGTCGACGTCT	8701	False	NA	NA	False	NA	NA	NA	85924493	85938625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_85924759_85926599_85926780_85926999_85927076_85927495_85927543_85929286_85929348_85930352_85930477_85935565_85935698_85936197_85936274_85938419
ENSMUSG00000107230.2_85924494_85938625_2	chr6	+	1161	9	NNC	ENSMUSG00000107230.2	novel	894	3	NA	NA	-14111	-40283	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	881	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGCGACGCGTCGACGTCT	8701	False	NA	NA	False	NA	NA	NA	85924493	85938625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_85924759_85926599_85926780_85926999_85927076_85927495_85927543_85929286_85929348_85930352_85930477_85935565_85935688_85936193_85936274_85938419
ENSMUSG00000107265.2_31273956_31294974_1	chr5	-	1536	9	NIC	ENSMUSG00000107265.2	novel	961	3	NA	NA	-286	19141	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	166	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCCCTTCCTCCCTAG	928	False	NA	NA	False	NA	NA	NA	31294974	31273955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_31274422_31288385_31288559_31289331_31289504_31291393_31291490_31293386_31293621_31294096_31294120_31294231_31294357_31294464_31294558_31294820
ENSMUSG00000107265.2_31274234_31294974_1	chr5	-	1258	9	NIC	ENSMUSG00000107265.2	novel	961	3	NA	NA	-286	18863	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCGCTGTGGCCCTGTCG	928	False	NA	NA	False	NA	NA	NA	31294974	31274233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_31274422_31288385_31288559_31289331_31289504_31291393_31291490_31293386_31293621_31294096_31294120_31294231_31294357_31294464_31294558_31294820
ENSMUSG00000107276.2_38196626_38294163_1	chr5	-	1424	11	Genic_Genomic	ENSMUSG00000107276.2	novel	1704	1	NA	NA	-722	95112	multi-exon	FALSE	non_canonical	0	0	junction_1	0	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGACCCCGGCAAGAACTC	NA	False	NA	NA	False	NA	NA	NA	38294163	38196625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_-_38196844_38249856_38249925_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293698
ENSMUSG00000107283.4_31298279_31311566_2	chr5	-	1420	8	FSM	ENSMUSG00000107283.4	ENSMUST00000202241.4	903	8	6	-523	0	161	multi-exon	FALSE	canonical	3	21	junction_2	130.575335984048	727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGTCTGTGTCAGTCTC	NA	False	NA	NA	False	NA	NA	NA	31311566	31298278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31299195_31302043_31302097_31302583_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
ENSMUSG00000107317.2_149201771_149224857_1	chr5	-	951	5	NIC	ENSMUSG00000107317.2	novel	4230	2	NA	NA	-179	17791	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	108	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCCCCTCTTCTTCCTCCC	NA	False	NA	NA	False	NA	NA	NA	149224857	149201770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_149201993_149209190_149209291_149215985_149216057_149222153_149222236_149224381
ENSMUSG00000107317.2_149201855_149224963_1	chr5	-	973	5	NIC	ENSMUSG00000107317.2	novel	4230	2	NA	NA	-285	17707	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	217	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGCCAGGCTGTGCTCT	NA	False	NA	NA	False	NA	NA	NA	149224963	149201854	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr5_-_149201993_149209190_149209291_149215985_149216057_149222153_149222236_149224381
ENSMUSG00000107319.2_67418039_67443872_1	chr5	-	1173	8	Genic_Genomic	ENSMUSG00000107319.2	novel	1292	1	NA	NA	-25267	-725	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1030	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAACCGGAAGTGATCCTT	NA	False	NA	NA	False	NA	NA	NA	67443872	67418038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_-_67418150_67418306_67418377_67421072_67421168_67421623_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438
ENSMUSG00000107319.2_67418039_67443872_2	chr5	-	1178	8	Genic_Genomic	ENSMUSG00000107319.2	novel	1292	1	NA	NA	-25267	-725	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1704	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAACCGGAAGTGATCCTT	NA	False	NA	NA	False	NA	NA	NA	67443872	67418038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_-_67418150_67418306_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425859_67425988_67441482_67441567_67443438
ENSMUSG00000107319.2_67418039_67445101_1	chr5	-	1620	9	Genic_Genomic	ENSMUSG00000107319.2	novel	1292	1	NA	NA	-26496	-725	multi-exon	FALSE	non_canonical	0	0	junction_1	0	369	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAACCGGAAGTGATCCTT	NA	False	NA	NA	False	NA	NA	NA	67445101	67418038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_-_67418150_67418306_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438_67443560_67444352
ENSMUSG00000107335.2_135038545_135041029_1	chr5	-	1101	6	Fusion	ENSMUSG00000085042.9_ENSMUSG00000107335.2	novel	604	4	NA	NA	613	2423	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2471	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTAGGGCTGTCCTGCG	NA	False	NA	NA	False	NA	NA	NA	135041029	135038544	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr5_-_135038694_135038835_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
ENSMUSG00000107335.2_135038545_135041029_2	chr5	-	1392	4	Fusion	ENSMUSG00000085042.9_ENSMUSG00000107335.2	novel	604	4	NA	NA	613	2423	intron_retention	FALSE	non_canonical	0	0	junction_1	0	318	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTAGGGCTGTCCTGCG	NA	False	NA	NA	False	NA	NA	NA	135041029	135038544	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr5_-_135038972_135039740_135040235_135040337_135040520_135040740
ENSMUSG00000107335.2_135038827_135041029_1	chr5	-	1110	4	Fusion	ENSMUSG00000085042.9_ENSMUSG00000107335.2	novel	604	4	NA	NA	613	2141	intron_retention	FALSE	non_canonical	0	0	junction_1	0	115	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGCCACCATGGAGTAAG	NA	False	NA	NA	False	NA	NA	NA	135041029	135038826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr5_-_135038972_135039740_135040235_135040337_135040520_135040740
ENSMUSG00000107368.2_126798959_126826088_1	chr6	+	1170	11	Genic_Genomic	ENSMUSG00000107368.2	novel	398	2	NA	NA	-381	23948	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12625	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCACGGCCGGTGCTTCC	NA	False	NA	NA	False	NA	NA	NA	126798958	126826088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_126799153_126801898_126801966_126804502_126804599_126809434_126809512_126811391_126811460_126813181_126813285_126817460_126817603_126819083_126819176_126821270_126821369_126821753_126821925_126826026
ENSMUSG00000107406.2_71520901_71557153_1	chr6	-	1058	6	NIC	ENSMUSG00000107406.2	novel	541	2	NA	NA	-36055	-725	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1306	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGGGGCTGGGAGGAAGG	NA	False	NA	NA	False	NA	NA	NA	71557153	71520900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_71520952_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624
ENSMUSG00000107406.2_71520901_71557153_2	chr6	-	883	4	NIC	ENSMUSG00000107406.2	novel	541	2	NA	NA	-36055	-725	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	163	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGGGGCTGGGAGGAAGG	NA	False	NA	NA	False	NA	NA	NA	71557153	71520900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_71521018_71551098_71551221_71554714_71554830_71556624
ENSMUSG00000107406.2_71520901_71557153_3	chr6	-	944	5	NIC	ENSMUSG00000107406.2	novel	541	2	NA	NA	-36055	-725	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	191	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGGGGCTGGGAGGAAGG	NA	False	NA	NA	False	NA	NA	NA	71557153	71520900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_-_71521018_71529382_71529444_71551098_71551221_71554714_71554830_71556624
ENSMUSG00000107476.4_48499315_48502045_1	chr6	+	2201	3	Genic_Genomic	ENSMUSG00000107476.4	novel	1776	6	NA	NA	9943	699	multi-exon	TRUE	non_canonical	0	0	junction_1	220.5	3447	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGCCCGGGCAAGAACC	NA	False	NA	NA	False	NA	NA	NA	48499314	48502045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_48500391_48500868_48501909_48501960
ENSMUSG00000107482.3_43093554_43104222_1	chr7	+	674	4	ISM	ENSMUSG00000004610.5	ENSMUST00000206196.2	551	5	0	1775	0	-1775	5prime_fragment	FALSE	canonical	3	1745	junction_1	133.129844721443	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTTTGTAACAGCTTTAC	1955	False	NA	NA	False	NA	NA	NA	43093553	43104222	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941
ENSMUSG00000107561.2_88289555_88423489_1	chr6	+	1003	5	Genic_Genomic	ENSMUSG00000107561.2	novel	742	2	NA	NA	-133114	-6	multi-exon	FALSE	non_canonical	0	0	junction_1	0	124	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCGCCAGCCCCGCGGTCC	NA	False	NA	NA	False	NA	NA	NA	88289554	88423489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_88289786_88332464_88332630_88335527_88335625_88353185_88353394_88423187
ENSMUSG00000107561.2_88289555_88423489_2	chr6	+	1008	5	Genic_Genomic	ENSMUSG00000107561.2	novel	742	2	NA	NA	-133114	-6	multi-exon	FALSE	non_canonical	0	0	junction_1	0	128	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCGCCAGCCCCGCGGTCC	NA	False	NA	NA	False	NA	NA	NA	88289554	88423489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_88289791_88332464_88332630_88335527_88335625_88353185_88353394_88423187
ENSMUSG00000107585.2_3470627_3471961_1	chr7	-	646	2	FSM	ENSMUSG00000107585.2	ENSMUST00000204020.2	1092	2	0	446	0	-446	multi-exon	FALSE	canonical	0	0	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGGGATCTAGGGGCAT	NA	False	NA	NA	False	AATAAA	-18	NA	3471961	3470626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_3471101_3471789
ENSMUSG00000107608.2_117883756_117902583_1	chr6	-	2140	4	Genic_Genomic	ENSMUSG00000107608.2_ENSMUSG00000042087.6	novel	1192	1	NA	NA	-7900	315	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7175	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGCAAGACGGTGATGG	5174	False	NA	NA	False	NA	NA	NA	117902583	117883755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_117883801_117894430_117894560_117896059_117896111_117900668
ENSMUSG00000107608.2_117883756_117902583_2	chr6	-	2210	5	Genic_Genomic	ENSMUSG00000107608.2_ENSMUSG00000042087.6	novel	1192	1	NA	NA	-7900	315	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8454	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGCAAGACGGTGATGG	5174	False	NA	NA	False	NA	NA	NA	117902583	117883755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_117883801_117884109_117884170_117894430_117894560_117896059_117896121_117900668
ENSMUSG00000107608.2_117883756_117902583_3	chr6	-	2131	4	Genic_Genomic	ENSMUSG00000107608.2_ENSMUSG00000042087.6	novel	1192	1	NA	NA	-7900	315	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5602	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGCAAGACGGTGATGG	5174	False	NA	NA	False	NA	NA	NA	117902583	117883755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_117883801_117894430_117894560_117896059_117896121_117900687
ENSMUSG00000107608.2_117884777_117902113_1	chr6	-	1738	4	Genic_Genomic	ENSMUSG00000107608.2	novel	1192	1	NA	NA	-7430	8715	multi-exon	FALSE	non_canonical	0	0	junction_1	0	332	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCGCTCGGCTTCGCTCG	5644	False	NA	NA	False	NA	NA	NA	117902113	117884776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_117884880_117894430_117894560_117896059_117896121_117900668
ENSMUSG00000107608.2_117884777_117902583_1	chr6	-	2208	4	Genic_Genomic	ENSMUSG00000107608.2	novel	1192	1	NA	NA	-7900	8715	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5313	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCGCTCGGCTTCGCTCG	5174	False	NA	NA	False	NA	NA	NA	117902583	117884776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_117884880_117894430_117894560_117896059_117896121_117900668
ENSMUSG00000107659.2_88480587_88495810_1	chr6	+	3069	12	NIC	ENSMUSG00000107659.2	novel	549	2	NA	NA	0	14551	intron_retention	FALSE	non_canonical	0	0	junction_1	0	308	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGCCGGGGATGGGCCA	NA	False	NA	NA	False	NA	NA	NA	88480586	88495810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr6_+_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
ENSMUSG00000107666.2_134286943_134326827_1	chr6	-	1157	4	NNC	ENSMUSG00000107666.2	novel	1505	9	NA	NA	53551	-1029	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	15.9652400197707	306	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATGTGTAAAAATCAATTC	NA	False	NA	NA	False	AAAAAG	-6	NA	134326827	134286942	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_134287767_134291473_134291617_134293190_134293294_134326740
ENSMUSG00000107909.2_148703412_148732962_1	chr6	+	1437	11	Genic_Genomic	ENSMUSG00000107909.2	novel	1661	1	NA	NA	-29538	-1648	multi-exon	FALSE	non_canonical	0	0	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGCCGGTGGGAGGTGGA	NA	False	NA	NA	False	NA	NA	NA	148703411	148732962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_148703488_148706119_148706220_148707882_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725984_148732661
ENSMUSG00000107944.2_113392290_113396309_2	chr6	+	1253	9	Genic_Genomic	ENSMUSG00000107944.2	novel	3111	1	NA	NA	-1143	-234	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1025	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCACGGACAGCTCAACCC	1574	False	NA	NA	False	NA	NA	NA	113392289	113396309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_113392684_113393267_113393394_113393749_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
ENSMUSG00000107944.2_113392290_113396309_3	chr6	+	1345	8	Genic_Genomic	ENSMUSG00000107944.2	novel	3111	1	NA	NA	-1143	-234	multi-exon	FALSE	non_canonical	0	0	junction_1	0	999	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCACGGACAGCTCAACCC	1574	False	NA	NA	False	NA	NA	NA	113392289	113396309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_113392684_113393267_113393408_113393749_113393874_113394101_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
ENSMUSG00000108129.3_125255237_125263005_1	chr6	+	1503	5	Genic_Genomic	ENSMUSG00000108129.3	novel	3458	4	NA	NA	12655	-1244	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5573	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCGCTCAACAGTCCAGG	NA	False	NA	NA	False	NA	NA	NA	125255236	125263005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_125255618_125257932_125258614_125259315_125259465_125259718_125259936_125262930
ENSMUSG00000108129.3_125255237_125263005_2	chr6	+	1479	5	Genic_Genomic	ENSMUSG00000108129.3	novel	3458	4	NA	NA	12655	-1244	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5491	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCGCTCAACAGTCCAGG	NA	False	NA	NA	False	NA	NA	NA	125255236	125263005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_125255618_125257932_125258614_125259315_125259465_125259718_125259912_125262930
ENSMUSG00000108170.2_52690748_52710206_1	chr6	-	584	5	Genic_Genomic	ENSMUSG00000108170.2	novel	612	1	NA	NA	-19266	-419	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGGAGAGCCGGCGGTGC	4133	False	NA	NA	False	NA	NA	NA	52710206	52690747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175
ENSMUSG00000108170.2_52690748_52743473_1	chr6	-	2959	18	Genic_Genomic	ENSMUSG00000108170.2	novel	612	1	NA	NA	-52533	-419	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1642	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGGAGAGCCGGCGGTGC	NA	False	NA	NA	False	NA	NA	NA	52743473	52690747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52719676_52719824_52721206_52721340_52723654_52723756_52728069_52728196_52730289_52730362_52734538_52734714_52735197_52735341_52742005_52742089_52742857
ENSMUSG00000108170.2_52690748_52743765_1	chr6	-	3251	18	Genic_Genomic	ENSMUSG00000108170.2	novel	612	1	NA	NA	-52825	-419	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2069	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGGAGAGCCGGCGGTGC	NA	False	NA	NA	False	NA	NA	NA	52743765	52690747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52719676_52719824_52721206_52721340_52723654_52723756_52728069_52728196_52730289_52730362_52734538_52734714_52735197_52735341_52742005_52742089_52742857
ENSMUSG00000108175.2_53821955_53835998_1	chr6	+	618	5	NNC	ENSMUSG00000108175.2	novel	2065	5	NA	NA	26227	-9170	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	6.80073525436772	158	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTTGTTCTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	53821954	53835998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_+_53822096_53828082_53828119_53834180_53834359_53835502_53835591_53835823
ENSMUSG00000108321.2_80398588_80453024_1	chr7	+	1841	15	NIC	ENSMUSG00000108321.2	novel	635	3	NA	NA	-2982	44664	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGCGCGGGCTGTCGCTGT	NA	False	NA	NA	False	NA	NA	NA	80398587	80453024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_80398736_80401073_80401199_80401616_80401778_80401937_80402102_80405927_80406013_80407151_80407316_80407921_80408007_80409505_80409685_80410562_80410677_80412245_80412314_80415042_80415120_80416632_80416711_80418056_80418214_80449597_80449698_80452888
ENSMUSG00000108353.2_127590539_127592919_1	chr7	+	986	4	Genic_Genomic	ENSMUSG00000108353.2	novel	3330	1	NA	NA	-1902	-2851	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6945	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTTAGGCCGATGGGC	1773	False	NA	NA	False	NA	NA	NA	127590538	127592919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_127590848_127591882_127592138_127592286_127592344_127592554
ENSMUSG00000108368.2_72577971_72584471_1	chr6	-	1747	10	Genic_Genomic	ENSMUSG00000108368.2	novel	2499	1	NA	NA	-1986	2016	multi-exon	FALSE	non_canonical	0	0	junction_1	0	924	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTGACTGAGAAAGCTGTA	NA	False	NA	NA	False	NA	NA	NA	72584471	72577970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_72578139_72578458_72578701_72579637_72579840_72580636_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583862_72584017_72584224
ENSMUSG00000108368.2_72578085_72584471_1	chr6	-	1633	10	Genic_Genomic	ENSMUSG00000108368.2	novel	2499	1	NA	NA	-1986	1902	multi-exon	FALSE	non_canonical	0	0	junction_1	0	878	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATGTTGTTCCAGCACA	NA	False	NA	NA	False	NA	NA	NA	72584471	72578084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_72578139_72578458_72578701_72579637_72579840_72580636_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583862_72584017_72584224
ENSMUSG00000108402.2_127399830_127402974_1	chr7	-	1722	7	Genic_Genomic	ENSMUSG00000108402.2	novel	2669	1	NA	NA	-1040	-564	multi-exon	FALSE	non_canonical	0	0	junction_1	0	198	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGGACCAGCTAGATGTAC	3845	False	NA	NA	False	NA	NA	NA	127402974	127399829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_127399887_127400298_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407_127401571_127401957
ENSMUSG00000108414.2_8700851_8703807_1	chr19	+	619	10	NIC	ENSMUSG00000108414.2	novel	605	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	350.936243374178	5052	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8700850	8703807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_8700871_8701504_8701554_8701740_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUSG00000108414.2_8700851_8703807_2	chr19	+	587	10	NNC	ENSMUSG00000108414.2	novel	605	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_9	342.417584929769	3979	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8700850	8703807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8700871_8701504_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703608
ENSMUSG00000108414.2_8700851_8703807_3	chr19	+	544	9	NIC	ENSMUSG00000108414.2	novel	605	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	346.176955291654	974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8700850	8703807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_8700871_8701766_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUSG00000108414.2_8700851_8703807_4	chr19	+	595	9	NNC	ENSMUSG00000108414.2	novel	605	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	365.157414685776	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8700850	8703807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8700871_8701504_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702811_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUSG00000108414.2_8700851_8703807_5	chr19	+	604	9	NNC	ENSMUSG00000108414.2	novel	605	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	365.157414685776	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8700850	8703807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8700871_8701504_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702802_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUSG00000108414.2_8700851_8703807_6	chr19	+	577	8	NNC	ENSMUSG00000108414.2	novel	605	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	385.901859153282	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8700850	8703807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8700871_8701504_8701554_8701766_8701848_8702035_8702092_8702802_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUSG00000108414.2_8701504_8703807_1	chr19	+	561	7	NNC	ENSMUSG00000108414.2	novel	709	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	436.709285452004	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8701503	8703807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702811_8702888_8703145_8703212_8703602
ENSMUSG00000108414.2_8701767_8703807_1	chr19	+	513	7	NNC	ENSMUSG00000108414.2	novel	709	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	393.775493001899	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8701766	8703807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_+_8701848_8702035_8702086_8702377_8702435_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUSG00000108414.2_8702705_8703807_1	chr19	+	709	3	ISM	ENSMUSG00000108414.2	ENSMUST00000205539.2	2348	4	1854	-2	-134	0	3prime_fragment	FALSE	canonical	3	1057	junction_2	14.5	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8702704	8703807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_8702888_8703145_8703467_8703602
ENSMUSG00000108415.2_25559565_25569362_1	chr7	+	583	2	NIC	ENSMUSG00000108415.2	novel	605	3	NA	NA	0	54	combination_of_known_splicesites	FALSE	canonical	3	19	junction_1	0	121	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTACTTATTCATGCAAT	NA	False	NA	NA	False	ACTAAA	-8	NA	25559564	25569362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_25559652_25568866
ENSMUSG00000108415.2_25559565_25569362_2	chr7	+	618	3	NNC	ENSMUSG00000108415.2	novel	605	3	NA	NA	0	54	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	2	118	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTACTTATTCATGCAAT	NA	False	NA	NA	False	ACTAAA	-8	NA	25559564	25569362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_25559652_25563155_25563191_25568866
ENSMUSG00000108420.2_125990469_125995909_1	chr7	+	553	3	Genic_Genomic	ENSMUSG00000108420.2	novel	1888	1	NA	NA	-4561	-1008	multi-exon	FALSE	non_canonical	0	0	junction_1	0	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGGCCTCTACACAGTCAC	NA	False	NA	NA	False	NA	NA	NA	125990468	125995909	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_125990567_125995113_125995187_125995527
ENSMUSG00000108466.2_71808363_71852241_2	chr6	-	2549	13	Genic_Genomic	ENSMUSG00000108466.2	novel	626	1	NA	NA	-43547	-294	multi-exon	FALSE	non_canonical	0	0	junction_1	0	186	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACAGCCTAGCTGCGTCCG	NA	False	NA	NA	False	NA	NA	NA	71852241	71808362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUSG00000108466.2_71808363_71852241_3	chr6	-	2690	14	Genic_Genomic	ENSMUSG00000108466.2	novel	626	1	NA	NA	-43547	-294	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1226	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACAGCCTAGCTGCGTCCG	NA	False	NA	NA	False	NA	NA	NA	71852241	71808362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_-_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71845551_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUSG00000108496.2_71649079_71660948_1	chr6	-	1169	3	NNC	ENSMUSG00000108496.2	novel	393	2	NA	NA	-11286	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	147	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGCTCAATGTCAAATAAA	NA	False	NA	NA	False	NA	NA	NA	71660948	71649078	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr6_-_71649319_71649520_71649698_71660196
ENSMUSG00000108511.2_121587988_121620410_1	chr7	+	2837	17	NIC	ENSMUSG00000108511.2	novel	750	2	NA	NA	7004	32071	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	526	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGGCACGTGACGGGGCG	NA	False	NA	NA	False	NA	NA	NA	121587987	121620410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_121589025_121589646_121589758_121590716_121590887_121594066_121594225_121596513_121596645_121596983_121597013_121597285_121597376_121598080_121598207_121599341_121599424_121601297_121601436_121601889_121601971_121603109_121603211_121606479_121606604_121607553_121607653_121609905_121609982_121611371_121611457_121620211
ENSMUSG00000108523.2_24902266_24919284_1	chr7	+	1668	5	Genic_Genomic	ENSMUSG00000108523.2	novel	1194	2	NA	NA	-16527	-1071	multi-exon	FALSE	non_canonical	0	0	junction_1	0	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTACGCCTGCGTCACC	828	False	NA	NA	False	NA	NA	NA	24902265	24919284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_24903357_24910573_24910724_24916969_24917093_24918225_24918457_24919211
ENSMUSG00000108546.2_30645421_30656182_1	chr7	+	1424	9	Genic_Genomic	ENSMUSG00000108546.2	novel	412	3	NA	NA	29013	9933	multi-exon	FALSE	non_canonical	0	0	junction_1	0	552	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGGGGGCGGGGGGGAGGG	NA	False	NA	NA	False	NA	NA	NA	30645420	30656182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_30646095_30646175_30646305_30646389_30646485_30654168_30654228_30654530_30654619_30654714_30654866_30655573_30655693_30655806_30655854_30656120
ENSMUSG00000108573.2_121687382_121701051_1	chr7	+	665	5	Genic_Genomic	ENSMUSG00000108573.2	novel	2829	1	NA	NA	-7924	2917	multi-exon	FALSE	non_canonical	0	0	junction_1	0	429	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACCCAGGATGCACTGC	NA	False	NA	NA	False	NA	NA	NA	121687381	121701051	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_121687562_121690808_121690909_121692839_121692928_121695831_121695955_121700877
ENSMUSG00000108573.2_121690056_121700929_1	chr7	+	494	5	Genic_Genomic	ENSMUSG00000108573.2	novel	2829	1	NA	NA	-5250	2795	multi-exon	FALSE	non_canonical	0	0	junction_1	0	558	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGGCATAGGGTGGTGCT	NA	False	NA	NA	False	NA	NA	NA	121690055	121700929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_121690187_121690808_121690909_121692839_121692928_121695831_121695955_121700877
ENSMUSG00000108573.2_121690056_121701051_1	chr7	+	616	5	Genic_Genomic	ENSMUSG00000108573.2	novel	2829	1	NA	NA	-5250	2917	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13839	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACCCAGGATGCACTGC	NA	False	NA	NA	False	NA	NA	NA	121690055	121701051	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_121690187_121690808_121690909_121692839_121692928_121695831_121695955_121700877
ENSMUSG00000108591.2_72409783_72416539_1	chr6	+	2801	9	Genic_Genomic	ENSMUSG00000108591.2	novel	1560	1	NA	NA	-6251	-1054	multi-exon	FALSE	non_canonical	0	0	junction_1	0	960	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCGGCGGGCGAAGCGGC	NA	False	NA	NA	False	NA	NA	NA	72409782	72416539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ENSMUSG00000108591.2_72409783_72416539_2	chr6	+	3386	8	Genic_Genomic	ENSMUSG00000108591.2	novel	1560	1	NA	NA	-6251	-1054	multi-exon	FALSE	non_canonical	0	0	junction_1	0	655	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCGGCGGGCGAAGCGGC	NA	False	NA	NA	False	NA	NA	NA	72409782	72416539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr6_+_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ENSMUSG00000108621.2_39201925_39214745_1	chr7	+	753	6	FSM	ENSMUSG00000108621.2	ENSMUST00000188038.3	16021	6	0	15268	0	111	multi-exon	FALSE	canonical	3	26	junction_1	12.1819538662728	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATCCAGTAAAGCTCTGAG	NA	False	NA	NA	False	NA	NA	NA	39201924	39214745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_39202036_39202651_39202757_39213125_39213253_39213425_39213487_39214290_39214506_39214611
ENSMUSG00000108645.2_63835207_63861175_1	chr7	-	1908	10	Genic_Genomic	ENSMUSG00000108645.2	novel	436	1	NA	NA	-8903	16630	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1417	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGCAGCCTCGTGACCTG	NA	False	NA	NA	False	NA	NA	NA	63861175	63835206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_63835372_63847030_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
ENSMUSG00000108668.2_128076134_128077299_1	chr7	+	343	2	NIC	ENSMUSG00000108668.2	novel	496	4	NA	NA	192	4	intron_retention	FALSE	canonical	1	1	junction_1	0	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTGGTCTTGGTGCTA	5215	False	NA	NA	False	NA	NA	NA	128076133	128077299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_128076352_128077174
ENSMUSG00000108688.2_121758730_121769098_1	chr7	-	2110	11	Genic_Genomic	ENSMUSG00000108688.2	novel	1016	1	NA	NA	-1831	7522	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1507	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGAGGGTCCTGCTCTGC	NA	False	NA	NA	False	NA	NA	NA	121769098	121758729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609_121768895_121768917
ENSMUSG00000108688.2_121758730_121769098_2	chr7	-	2113	11	Genic_Genomic	ENSMUSG00000108688.2	novel	1016	1	NA	NA	-1831	7522	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1315	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGAGGGTCCTGCTCTGC	NA	False	NA	NA	False	NA	NA	NA	121769098	121758729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609_121768885_121768904
ENSMUSG00000108937.2_59632862_59782145_1	chr7	+	1385	10	Genic_Genomic	ENSMUSG00000108937.2	novel	1483	1	NA	NA	-149088	-1287	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4258	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTACAATGGAACAAAGGAAC	NA	False	NA	NA	False	NA	NA	NA	59632861	59782145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59781997
ENSMUSG00000108955.2_3508816_3517648_1	chr8	+	938	4	Genic_Genomic	ENSMUSG00000108955.2	novel	1456	1	NA	NA	777	8154	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACCCAGGGCGGGGTCAA	8276	False	NA	NA	False	NA	NA	NA	3508815	3517648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_+_3509435_3510271_3510335_3513921_3514101_3517571
ENSMUSG00000108979.2_118339970_118365769_1	chr7	-	918	9	Genic_Genomic	ENSMUSG00000108979.2	novel	733	1	NA	NA	-25365	-298	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATCGCCTGTTTTCCGCG	NA	False	NA	NA	False	NA	NA	NA	118365769	118339969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587
ENSMUSG00000109017.2_28728448_28729488_1	chr7	+	511	3	FSM	ENSMUSG00000109017.2	ENSMUST00000207099.2	698	3	0	187	0	-187	multi-exon	FALSE	canonical	0	0	junction_1	6	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATGTTGTGTGATACCAC	NA	False	NA	NA	False	AATAAA	-21	NA	28728447	28729488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28728527_28728944_28729078_28729189
ENSMUSG00000109032.2_75375898_75380298_1	chr9	+	376	3	NNC	ENSMUSG00000109032.2	novel	1137	9	NA	NA	0	-8600	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	4.5	63	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAGTTTATCTGTCATGA	NA	False	NA	NA	False	AATAAA	-20	NA	75375897	75380298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_75375966_75379458_75379554_75380085
ENSMUSG00000109032.2_75375898_75393963_1	chr9	+	2416	4	NIC	ENSMUSG00000109032.2	novel	505	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_1	3.2659863237109	119	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTTATGTGTGTGCATT	NA	False	NA	16	True	AATAAA	-21	NA	75375897	75393963	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_75375966_75388729_75388947_75390380_75390480_75391931
ENSMUSG00000109128.2_152506623_152524292_1	chrX	-	775	4	NNC	ENSMUSG00000109128.2	novel	545	3	NA	NA	-17415	-2470	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1919	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCAGGCACGGGGCTGGC	NA	False	NA	NA	False	NA	NA	NA	152524292	152506622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chrX_-_152506934_152508708_152508838_152511857_152511936_152524035
ENSMUSG00000109168.2_28014316_28015602_1	chr7	+	849	4	NIC	ENSMUSG00000109168.2	novel	448	2	NA	NA	-7	-2696	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTAGACAGAAGAAAAGGG	NA	False	NA	NA	False	NA	NA	NA	28014315	28015602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_28014696_28014773_28014870_28015147_28015352_28015433
ENSMUSG00000109168.2_28014316_28038171_1	chr7	+	3537	29	NNC	ENSMUSG00000109168.2	novel	448	2	NA	NA	-7	19873	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	324	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGGCCTGAGCGCTCTCT	NA	False	NA	NA	False	NA	NA	NA	28014315	28038171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_+_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029998_28030071_28030794_28030955_28037776_28037861_28038119
ENSMUSG00000109274.2_5059724_5063784_1	chr7	-	1305	6	Fusion	ENSMUSG00000086604.3_ENSMUSG00000109274.2	novel	1172	4	NA	NA	1264	2552	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCGCACTTGCGCGATAG	NA	False	NA	NA	False	NA	NA	NA	5063784	5059723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr7_-_5059797_5060497_5060659_5060797_5060903_5060990_5061168_5062494_5062705_5063205
ENSMUSG00000109324.3_44625413_44635792_1	chr7	-	2023	10	FSM	ENSMUSG00000109324.3	ENSMUST00000207370.2	2147	10	124	0	-12	0	multi-exon	FALSE	canonical	3	3261	junction_9	152.269092540837	18959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGGCTGTTTGCGTGGTT	NA	False	NA	NA	False	NA	NA	NA	44635792	44625412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44635706
ENSMUSG00000109324.3_44626182_44635792_1	chr7	-	1413	12	NIC	ENSMUSG00000109324.3	novel	1508	11	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	1527.14858261678	3578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTCTCGCCCTGGGGCT	NA	False	NA	-30	True	AATAAA	-17	NA	44635792	44626181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44633194_44633300_44633503_44633558_44635706
ENSMUSG00000109324.3_44626182_44635792_2	chr7	-	1246	10	NNC	ENSMUSG00000109324.3	novel	1508	11	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1111.58030093741	6767	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTCTCGCCCTGGGGCT	NA	False	NA	-30	True	AATAAA	-17	NA	44635792	44626181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_44626408_44626927_44627042_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44635706
ENSMUSG00000109324.3_44626182_44635792_3	chr7	-	1417	12	NNC	ENSMUSG00000109324.3	novel	1508	11	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1527.14858261678	3588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTCTCGCCCTGGGGCT	NA	False	NA	-30	True	AATAAA	-17	NA	44635792	44626181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44633194_44633300_44633499_44633558_44635706
ENSMUSG00000109324.3_44626182_44635792_4	chr7	-	1252	10	NNC	ENSMUSG00000109324.3	novel	1508	11	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1113.16845086447	10938	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTCTCGCCCTGGGGCT	NA	False	NA	-30	True	AATAAA	-17	NA	44635792	44626181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631069_44631157_44631318_44632909_44633012_44635706
ENSMUSG00000109324.3_44626182_44635916_1	chr7	-	1378	10	FSM	ENSMUSG00000109324.3	ENSMUST00000207370.2	2147	10	0	769	0	0	multi-exon	FALSE	canonical	3	3261	junction_9	152.269092540837	18271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTCTCGCCCTGGGGCT	NA	False	NA	-30	True	AATAAA	-17	NA	44635916	44626181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44635706
ENSMUSG00000109350.2_19405511_19407684_1	chr7	-	572	4	NNC	ENSMUSG00000109350.2	novel	587	4	NA	NA	7651	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2.49443825784929	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGGCGTCGTGTGGCTTC	7352	False	NA	NA	False	AATAAA	-13	NA	19407684	19405510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr7_-_19405774_19407153_19407305_19407471_19407587_19407641
ENSMUSG00000109482.3_72622776_72640834_1	chr12	-	381	3	NNC	ENSMUSG00000109482.3	novel	873	6	NA	NA	15032	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_2	1	49	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTAAGTAGTAGGGTTTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	72640834	72622775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_72622893_72624511_72624657_72640715
ENSMUSG00000109511.2_44465724_44477936_1	chr7	+	210	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	212	2300	0	-176	multi-exon	FALSE	canonical	3	986	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGATTTGCCCCAGAGTCG	287	False	NA	NA	False	NA	NA	NA	44465723	44477936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44465908_44477910
ENSMUSG00000109511.2_44465820_44480233_1	chr7	+	2411	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	308	3	13	0	multi-exon	FALSE	canonical	3	986	junction_1	0	861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTGCTGTGAGTATGGG	383	False	NA	18	True	AATAAA	-18	NA	44465819	44480233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44465908_44477910
ENSMUSG00000109765.3_22076120_22081811_1	chr9	+	1491	4	NNC	ENSMUSG00000109765.3	novel	1468	3	NA	NA	-2655	-137	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0.471404520791032	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGTGTGTGTGTATA	5093	False	NA	NA	False	AATAAA	-14	NA	22076119	22081811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_22076282_22078776_22078904_22079092_22079151_22080667
ENSMUSG00000109771.2_110228200_110242286_1	chr5	-	428	3	ISM	ENSMUSG00000109771.2	ENSMUST00000210052.2	3523	4	0	4198	0	-1060	5prime_fragment	FALSE	canonical	3	35	junction_2	13	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGGTGTCTGAATTGTG	NA	False	NA	NA	False	NA	NA	NA	110242286	110228199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_-_110228411_110228603_110228731_110242196
ENSMUSG00000109799.2_109820938_109881710_1	chr7	-	3004	12	NIC	ENSMUSG00000109799.2	novel	2141	4	NA	NA	-976	56051	intron_retention	FALSE	non_canonical	0	0	junction_1	0	290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGACTCGGCCCGCCGCGC	NA	False	NA	NA	False	NA	NA	NA	109881710	109820937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_109821117_109842590_109842732_109854941_109855116_109863086_109863315_109865042_109865190_109866988_109867098_109869106_109869289_109872466_109872575_109873841_109874009_109878386_109878586_109879773_109879871_109880437
ENSMUSG00000109865.2_3489887_3513827_2	chr2	-	1759	14	NNC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	275.019289264327	1071	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGAGTCTTTGTTTTCTT	3966	False	NA	-5	True	ATTAAA	-20	NA	3513827	3489886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_3490107_3490734_3490794_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
ENSMUSG00000109865.2_3489887_3513827_3	chr2	-	1763	14	NNC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	283.053259880529	2897	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGAGTCTTTGTTTTCTT	3966	False	NA	-5	True	ATTAAA	-20	NA	3513827	3489886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503815_3512051_3512135_3512210_3512292_3513670
ENSMUSG00000109865.2_3489887_3513827_4	chr2	-	1776	14	NNC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	281.012876371156	3379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGAGTCTTTGTTTTCTT	3966	False	NA	-5	True	ATTAAA	-20	NA	3513827	3489886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512205_3512292_3513670
ENSMUSG00000109865.2_3489887_3513827_5	chr2	-	1765	14	NNC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	283.331177622615	2038	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGAGTCTTTGTTTTCTT	3966	False	NA	-5	True	ATTAAA	-20	NA	3513827	3489886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502170_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
ENSMUSG00000109865.2_3489887_3513827_6	chr2	-	1765	14	NNC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	282.991709582291	1590	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGAGTCTTTGTTTTCTT	3966	False	NA	-5	True	ATTAAA	-20	NA	3513827	3489886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497606_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
ENSMUSG00000109865.2_3489887_3513827_7	chr2	-	1749	13	NNC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	294.472539278094	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGAGTCTTTGTTTTCTT	3966	False	NA	-5	True	ATTAAA	-20	NA	3513827	3489886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3512024_3512135_3512210_3512292_3513670
ENSMUSG00000109865.2_3489887_3513827_9	chr2	-	1762	14	NNC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	283.243450182005	2162	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGAGTCTTTGTTTTCTT	3966	False	NA	-5	True	ATTAAA	-20	NA	3513827	3489886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499067_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
ENSMUSG00000109865.2_3490013_3513827_1	chr2	-	1645	14	FSM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	24	126	24	0	multi-exon	FALSE	canonical	3	902	junction_5	73.9537677425134	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATGGTTTTTAGAACTAT	3966	False	NA	-131	True	GATAAA	-3	NA	3513827	3490012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
ENSMUSG00000109946.2_27332515_27334233_1	chr2	+	1606	2	NNC	ENSMUSG00000109946.2	novel	509	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	81	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTTTCTCATTTTTCTT	NA	False	NA	3	True	AATAAA	-15	NA	27332514	27334233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr2_+_27332827_27332939
ENSMUSG00000109947.2_44732337_44741613_1	chr7	+	1421	7	NIC	ENSMUSG00000109947.2	novel	459	2	NA	NA	-8496	-6131	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	652	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGTCCAGAGGCTGCCGC	NA	False	NA	NA	False	NA	NA	NA	44732336	44741613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741528
ENSMUSG00000109975.2_21593308_21604526_1	chr12	+	465	5	NIC	ENSMUSG00000109975.2	novel	363	4	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	112	junction_2	32.0507410210747	837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAAAGGCGTTTTTTTTTT	6100	False	NA	NA	False	ACTAAA	-22	NA	21593307	21604526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_21593347_21595309_21595401_21599867_21599956_21604009_21604108_21604377
ENSMUSG00000109975.2_21593308_21604526_2	chr12	+	579	5	NNC	ENSMUSG00000109975.2	novel	363	4	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	69.7370059580995	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAAAGGCGTTTTTTTTTT	6100	False	NA	NA	False	ACTAAA	-22	NA	21593307	21604526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_21593347_21595309_21595401_21599753_21599956_21604009_21604108_21604377
ENSMUSG00000109975.2_21593308_21604688_1	chr12	+	627	5	NIC	ENSMUSG00000109975.2	novel	363	4	NA	NA	0	166	combination_of_known_junctions	FALSE	canonical	3	112	junction_2	32.0507410210747	1204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTTCTGTCTTAGTTA	6100	False	NA	NA	False	ATTAAA	-18	NA	21593307	21604688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_21593347_21595309_21595401_21599867_21599956_21604009_21604108_21604377
ENSMUSG00000110013.2_52809646_52812639_1	chr8	+	1161	2	ISM	ENSMUSG00000110013.2	ENSMUST00000210977.2	763	4	0	43735	0	-43735	5prime_fragment	FALSE	canonical	3	54	junction_1	0	214	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGTTTTTGGCCC	NA	False	NA	5	True	NA	NA	NA	52809645	52812639	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_52809842_52811674
ENSMUSG00000110013.2_52809646_52813549_1	chr8	+	2071	2	ISM	ENSMUSG00000110013.2	ENSMUST00000210977.2	763	4	0	42825	0	-42825	5prime_fragment	FALSE	canonical	3	54	junction_1	0	451	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTTGCATCTTTCCTG	NA	False	NA	21	True	NA	NA	NA	52809645	52813549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_52809842_52811674
ENSMUSG00000110013.2_52809646_52813735_1	chr8	+	2257	2	ISM	ENSMUSG00000110013.2	ENSMUST00000210977.2	763	4	0	42639	0	-42639	5prime_fragment	FALSE	canonical	3	54	junction_1	0	490	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGTTTCTCGTGAGTGAT	NA	False	NA	23	True	NA	NA	NA	52809645	52813735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_52809842_52811674
ENSMUSG00000110070.2_45017315_45020007_1	chr7	+	1408	5	Fusion	ENSMUSG00000110070.2_ENSMUSG00000091510.5	novel	714	3	NA	NA	-286	1879	intron_retention	FALSE	non_canonical	0	0	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGCGCCAGCGAGGAGGT	717	False	NA	NA	False	NA	NA	NA	45017314	45020007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr7_+_45017423_45017727_45018775_45019338_45019411_45019550_45019670_45019945
ENSMUSG00000110156.3_5962981_5964859_1	chr19	+	754	2	FSM	ENSMUSG00000110156.3	ENSMUST00000209642.2	647	2	131	-238	0	2	multi-exon	FALSE	canonical	3	13	junction_1	0	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCACACTACACAGCGGCT	9355	False	NA	5	True	NA	NA	NA	5962980	5964859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5963101_5964225
ENSMUSG00000110197.2_45457033_45463715_1	chr7	+	1531	12	Genic_Genomic	ENSMUSG00000110197.2	novel	898	1	NA	NA	-6413	-628	multi-exon	FALSE	non_canonical	0	0	junction_1	0	866	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGGGCCCGCCCCTTGCT	8042	False	NA	NA	False	NA	NA	NA	45457032	45463715	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_45457273_45457356_45457512_45457599_45457672_45457796_45457874_45459546_45459663_45459994_45460144_45460277_45460391_45460952_45461034_45461603_45461723_45462270_45462338_45462432_45462581_45463521
ENSMUSG00000110206.2_44780612_44783913_1	chr7	-	895	5	ISM	ENSMUSG00000110206.2	ENSMUST00000211429.2	1358	8	1796	0	456	0	3prime_fragment	FALSE	canonical	1	2	junction_1	4.41588043316392	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCTGCGTGCCTGGAAT	NA	False	NA	NA	False	AATAAA	-16	NA	44783913	44780611	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr7_-_44780991_44781492_44781562_44781651_44781837_44783305_44783451_44783796
ENSMUSG00000110230.2_122630597_122743017_1	chr7	+	348	3	NIC	ENSMUSG00000110230.2	novel	446	3	NA	NA	0	-25884	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	3	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAGACGACAAGAAAA	1695	False	NA	NA	False	NA	NA	NA	122630596	122743017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_+_122630774_122660895_122661022_122742972
ENSMUSG00000110256.2_23731362_23747082_1	chr8	+	1784	6	Genic_Genomic	ENSMUSG00000110256.2	novel	2275	1	NA	NA	-15289	-1843	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3584	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACGTCCTGTCGCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	23731361	23747082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_+_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689_23746823_23747035
ENSMUSG00000110256.2_23731362_23747082_3	chr8	+	1789	6	Genic_Genomic	ENSMUSG00000110256.2	novel	2275	1	NA	NA	-15289	-1843	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3410	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACGTCCTGTCGCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	23731361	23747082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_+_23732648_23734746_23734815_23735878_23735981_23740264_23740418_23746689_23746823_23747035
ENSMUSG00000110270.2_47057214_47070250_1	chr8	+	1479	5	NIC	ENSMUSG00000110270.2	novel	678	2	NA	NA	-570	11252	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGAGCCGGAGGGGGCGG	NA	False	NA	NA	False	NA	NA	NA	47057213	47070250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
ENSMUSG00000110279.2_44766796_44773796_1	chr7	+	591	6	Genic_Genomic	ENSMUSG00000110279.2	novel	778	3	NA	NA	-4545	228	multi-exon	FALSE	non_canonical	0	0	junction_1	0	241807	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCGGGGCGGAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	44766795	44773796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_44766803_44771812_44771983_44772252_44772383_44772586_44772663_44772842_44772975_44773720
ENSMUSG00000110279.2_44771803_44773796_1	chr7	+	602	5	Genic_Genomic	ENSMUSG00000110279.2	novel	778	3	NA	NA	462	228	multi-exon	FALSE	non_canonical	0	0	junction_1	0	124661	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCGGGGCGGAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	44771802	44773796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_44771983_44772252_44772383_44772586_44772663_44772842_44772975_44773712
ENSMUSG00000110279.2_44771803_44773796_10	chr7	+	589	5	Genic_Genomic	ENSMUSG00000110279.2	novel	778	3	NA	NA	462	228	multi-exon	FALSE	non_canonical	0	0	junction_1	0	279118	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCGGGGCGGAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	44771802	44773796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_44771983_44772252_44772383_44772586_44772663_44772847_44772975_44773720
ENSMUSG00000110279.2_44771803_44773796_2	chr7	+	591	5	Genic_Genomic	ENSMUSG00000110279.2	novel	778	3	NA	NA	462	228	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47217	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCGGGGCGGAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	44771802	44773796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_44771983_44772252_44772369_44772575_44772663_44772842_44772975_44773720
ENSMUSG00000110279.2_44771803_44773796_3	chr7	+	586	5	Genic_Genomic	ENSMUSG00000110279.2	novel	778	3	NA	NA	462	228	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71217	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCGGGGCGGAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	44771802	44773796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_44771983_44772252_44772383_44772586_44772663_44772842_44772975_44773728
ENSMUSG00000110279.2_44771803_44773796_4	chr7	+	586	5	Genic_Genomic	ENSMUSG00000110279.2	novel	778	3	NA	NA	462	228	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28391	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCGGGGCGGAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	44771802	44773796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_44771966_44772243_44772383_44772586_44772663_44772842_44772975_44773720
ENSMUSG00000110279.2_44771803_44773796_5	chr7	+	579	5	Genic_Genomic	ENSMUSG00000110279.2	novel	778	3	NA	NA	462	228	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26518	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCGGGGCGGAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	44771802	44773796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_44771983_44772252_44772383_44772601_44772663_44772842_44772975_44773720
ENSMUSG00000110279.2_44771803_44773796_6	chr7	+	584	5	Genic_Genomic	ENSMUSG00000110279.2	novel	778	3	NA	NA	462	228	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41133	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCGGGGCGGAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	44771802	44773796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_44771983_44772252_44772369_44772582_44772663_44772842_44772975_44773720
ENSMUSG00000110279.2_44771803_44773796_7	chr7	+	584	5	Genic_Genomic	ENSMUSG00000110279.2	novel	778	3	NA	NA	462	228	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52391	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCGGGGCGGAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	44771802	44773796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_44771973_44772252_44772383_44772586_44772663_44772842_44772975_44773720
ENSMUSG00000110279.2_44771803_44773796_8	chr7	+	603	5	Genic_Genomic	ENSMUSG00000110279.2	novel	778	3	NA	NA	462	228	multi-exon	FALSE	non_canonical	0	0	junction_1	0	171159	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCGGGGCGGAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	44771802	44773796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_44771983_44772243_44772383_44772586_44772663_44772842_44772975_44773720
ENSMUSG00000110279.2_44771803_44773796_9	chr7	+	587	5	Genic_Genomic	ENSMUSG00000110279.2	novel	778	3	NA	NA	462	228	multi-exon	FALSE	non_canonical	0	0	junction_1	0	127518	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCGGGGCGGAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	44771802	44773796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_44771983_44772259_44772383_44772586_44772663_44772842_44772975_44773720
ENSMUSG00000110279.2_44771857_44773759_1	chr7	+	488	5	Genic_Genomic	ENSMUSG00000110279.2	novel	778	3	NA	NA	516	191	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1302	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCAGGGCCGCTCCCGGC	NA	False	NA	NA	False	NA	NA	NA	44771856	44773759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_44771983_44772252_44772383_44772601_44772663_44772842_44772975_44773720
ENSMUSG00000110279.2_44771857_44773759_2	chr7	+	496	5	Genic_Genomic	ENSMUSG00000110279.2	novel	778	3	NA	NA	516	191	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3414	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCAGGGCCGCTCCCGGC	NA	False	NA	NA	False	NA	NA	NA	44771856	44773759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_44771983_44772259_44772383_44772586_44772663_44772842_44772975_44773720
ENSMUSG00000110279.2_44771857_44773759_3	chr7	+	493	5	Genic_Genomic	ENSMUSG00000110279.2	novel	778	3	NA	NA	516	191	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1569	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCAGGGCCGCTCCCGGC	NA	False	NA	NA	False	NA	NA	NA	44771856	44773759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_44771983_44772252_44772369_44772582_44772663_44772842_44772975_44773720
ENSMUSG00000110279.2_44771857_44773759_4	chr7	+	511	5	Genic_Genomic	ENSMUSG00000110279.2	novel	778	3	NA	NA	516	191	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2493	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCAGGGCCGCTCCCGGC	NA	False	NA	NA	False	NA	NA	NA	44771856	44773759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_44771983_44772252_44772383_44772586_44772663_44772842_44772975_44773712
ENSMUSG00000110279.2_44771857_44773759_5	chr7	+	512	5	Genic_Genomic	ENSMUSG00000110279.2	novel	778	3	NA	NA	516	191	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1577	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCAGGGCCGCTCCCGGC	NA	False	NA	NA	False	NA	NA	NA	44771856	44773759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_44771983_44772243_44772383_44772586_44772663_44772842_44772975_44773720
ENSMUSG00000110350.2_45107368_45109263_1	chr7	+	917	4	Genic_Genomic	ENSMUSG00000110350.2	novel	832	1	NA	NA	-1525	-461	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31749	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCCCGGGCAAGGAGCGC	NA	False	NA	NA	False	NA	NA	NA	45107367	45109263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_45107708_45107958_45108085_45108513_45108655_45108953
ENSMUSG00000110350.2_45107368_45109263_2	chr7	+	923	4	Genic_Genomic	ENSMUSG00000110350.2	novel	832	1	NA	NA	-1525	-461	multi-exon	FALSE	non_canonical	0	0	junction_1	0	147456	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCCCGGGCAAGGAGCGC	NA	False	NA	NA	False	NA	NA	NA	45107367	45109263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_45107708_45107958_45108085_45108507_45108655_45108953
ENSMUSG00000110350.2_45107513_45109263_1	chr7	+	778	4	Genic_Genomic	ENSMUSG00000110350.2	novel	832	1	NA	NA	-1380	-461	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1836	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCCCGGGCAAGGAGCGC	NA	False	NA	NA	False	NA	NA	NA	45107512	45109263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_+_45107708_45107958_45108085_45108507_45108655_45108953
ENSMUSG00000110357.2_45282039_45288517_1	chr7	-	1555	8	Fusion	ENSMUSG00000109998.2_ENSMUSG00000110357.2	novel	1542	2	NA	NA	-328	-857	multi-exon	FALSE	non_canonical	0	0	junction_1	0	347	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAAGGCCCAGCCCGGT	9694	False	NA	NA	False	NA	NA	NA	45288517	45282038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr7_-_45282314_45284240_45284279_45284390_45284543_45284639_45284756_45285761_45286006_45286143_45286317_45287293_45287442_45288108
ENSMUSG00000110357.2_45285700_45288189_1	chr7	-	946	2	FSM	ENSMUSG00000110357.2	ENSMUST00000211533.2	1542	2	0	596	0	-596	multi-exon	FALSE	canonical	3	16	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGGGCTTCTGGGAAATG	NA	False	NA	NA	False	AATAAA	-18	NA	45288189	45285699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45286563_45288106
ENSMUSG00000110357.2_45285795_45288517_1	chr7	-	793	3	NIC	ENSMUSG00000110357.2	novel	1542	2	NA	NA	-328	-691	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAGGAGAGCTGGCAGTG	9694	False	NA	NA	False	NA	NA	NA	45288517	45285794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr7_-_45286006_45286143_45286317_45288108
ENSMUSG00000110444.3_69826180_69848181_1	chr8	-	767	5	FSM	ENSMUSG00000110444.3	ENSMUST00000213012.2	7778	5	-7	7018	-1	0	multi-exon	FALSE	canonical	2	5	junction_3	16.5	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTTCACATCAGAGTTAT	NA	False	NA	NA	False	NA	NA	NA	69848181	69826179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_69826560_69827709_69827771_69827957_69828085_69829137_69829248_69848092
ENSMUSG00000110457.3_106700145_106706070_1	chr8	+	1707	10	NIC	ENSMUSG00000110457.3	novel	3186	3	NA	NA	416	-4555	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	145	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATTTTCCACTCCTACAA	NA	False	NA	NA	False	NA	NA	NA	106700144	106706070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_106700484_106701326_106701463_106701813_106701890_106702751_106702837_106703892_106704070_106704191_106704262_106704531_106704674_106704773_106704904_106705343_106705471_106705645
ENSMUSG00000110457.3_106700145_106706070_2	chr8	+	1794	10	NNC	ENSMUSG00000110457.3	novel	3186	3	NA	NA	416	-4555	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	148	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATTTTCCACTCCTACAA	NA	False	NA	NA	False	NA	NA	NA	106700144	106706070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_106700484_106701326_106701463_106701813_106701890_106702751_106702837_106703892_106704070_106704191_106704262_106704531_106704674_106704773_106704904_106705343_106705558_106705645
ENSMUSG00000110489.2_96535180_96544326_1	chr8	-	321	3	FSM	ENSMUSG00000110489.2	ENSMUST00000212957.2	153	3	-7	-161	-7	0	multi-exon	FALSE	canonical	3	213	junction_1	80.5	2874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAATAGTACTGGTATG	NA	False	NA	-4	True	TTTAAA	-1	NA	96544326	96535179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_96535388_96539088_96539129_96544253
ENSMUSG00000110547.2_124626039_124632967_1	chr8	+	380	4	NIC	ENSMUSG00000110547.2	novel	1895	2	NA	NA	3027	5608	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	293	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTAAGTCCAAGGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	124626038	124632967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_+_124626250_124629337_124629427_124631290_124631356_124632952
ENSMUSG00000110575.2_71215419_71219307_1	chr8	+	971	7	Genic_Genomic	ENSMUSG00000110575.2	novel	1642	1	NA	NA	-3804	-1557	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2624	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCAGGCCAGGAAGGCGGG	NA	False	NA	NA	False	AAAAAG	-16	NA	71215418	71219307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_+_71215686_71215772_71215827_71216371_71216516_71217191_71217285_71217363_71217439_71217563_71217747_71219152
ENSMUSG00000110575.2_71215419_71219307_2	chr8	+	974	7	Genic_Genomic	ENSMUSG00000110575.2	novel	1642	1	NA	NA	-3804	-1557	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2665	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCAGGCCAGGAAGGCGGG	NA	False	NA	NA	False	AAAAAG	-16	NA	71215418	71219307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_+_71215686_71215772_71215827_71216371_71216525_71217191_71217285_71217369_71217439_71217563_71217747_71219152
ENSMUSG00000110575.2_71215419_71219307_3	chr8	+	973	7	Genic_Genomic	ENSMUSG00000110575.2	novel	1642	1	NA	NA	-3804	-1557	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2667	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCAGGCCAGGAAGGCGGG	NA	False	NA	NA	False	AAAAAG	-16	NA	71215418	71219307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_+_71215686_71215779_71215827_71216371_71216525_71217191_71217285_71217363_71217439_71217563_71217747_71219152
ENSMUSG00000110588.2_94899292_94900196_1	chr8	-	502	3	Genic_Genomic	ENSMUSG00000110588.2	novel	2665	1	NA	NA	-156	-1916	multi-exon	FALSE	non_canonical	0	0	junction_1	0	143472	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAAGGGATATGGCCAGC	NA	False	NA	NA	False	NA	NA	NA	94900196	94899291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_94899495_94899754_94899821_94899963
ENSMUSG00000110588.2_94899292_94900196_2	chr8	-	493	3	Genic_Genomic	ENSMUSG00000110588.2	novel	2665	1	NA	NA	-156	-1916	multi-exon	FALSE	non_canonical	0	0	junction_1	0	93444	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAAGGGATATGGCCAGC	NA	False	NA	NA	False	NA	NA	NA	94900196	94899291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_94899504_94899754_94899803_94899963
ENSMUSG00000110588.2_94899488_94900196_1	chr8	-	306	3	Genic_Genomic	ENSMUSG00000110588.2	novel	2665	1	NA	NA	-156	-2112	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5847	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGGTCCATGGCGAGTG	NA	False	NA	NA	False	NA	NA	NA	94900196	94899487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_94899495_94899754_94899821_94899963
ENSMUSG00000110588.2_94899488_94900196_2	chr8	-	306	3	Genic_Genomic	ENSMUSG00000110588.2	novel	2665	1	NA	NA	-156	-2112	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5325	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGGTCCATGGCGAGTG	NA	False	NA	NA	False	NA	NA	NA	94900196	94899487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_94899504_94899754_94899812_94899963
ENSMUSG00000110588.2_94899488_94900196_4	chr8	-	310	3	Genic_Genomic	ENSMUSG00000110588.2	novel	2665	1	NA	NA	-156	-2112	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6942	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGGTCCATGGCGAGTG	NA	False	NA	NA	False	NA	NA	NA	94900196	94899487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_94899504_94899754_94899821_94899968
ENSMUSG00000110588.2_94899488_94900196_5	chr8	-	280	3	Genic_Genomic	ENSMUSG00000110588.2	novel	2665	1	NA	NA	-156	-2112	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4101	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGGTCCATGGCGAGTG	NA	False	NA	NA	False	NA	NA	NA	94900196	94899487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_94899504_94899754_94899821_94899998
ENSMUSG00000110588.2_94899488_94900196_6	chr8	-	303	3	Genic_Genomic	ENSMUSG00000110588.2	novel	2665	1	NA	NA	-156	-2112	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6401	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGGTCCATGGCGAGTG	NA	False	NA	NA	False	NA	NA	NA	94900196	94899487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_94899504_94899754_94899821_94899975
ENSMUSG00000110588.2_94899488_94900196_7	chr8	-	566	2	Genic_Genomic	ENSMUSG00000110588.2	novel	2665	1	NA	NA	-156	-2112	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6999	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGGTCCATGGCGAGTG	NA	False	NA	NA	False	NA	NA	NA	94900196	94899487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_94899821_94899963
ENSMUSG00000110588.2_94899488_94900196_8	chr8	-	297	3	Genic_Genomic	ENSMUSG00000110588.2	novel	2665	1	NA	NA	-156	-2112	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4551	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGGTCCATGGCGAGTG	NA	False	NA	NA	False	NA	NA	NA	94900196	94899487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_94899504_94899754_94899803_94899963
ENSMUSG00000110588.2_94899632_94900196_1	chr8	-	422	2	Genic_Genomic	ENSMUSG00000110588.2	novel	2665	1	NA	NA	-156	-2256	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6636	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAGCAGGAGTGCTTCA	NA	False	NA	NA	False	NA	NA	NA	94900196	94899631	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_94899821_94899963
ENSMUSG00000110588.2_94899754_94900196_1	chr8	-	297	2	Genic_Genomic	ENSMUSG00000110588.2	novel	2665	1	NA	NA	-156	-2378	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5260	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAGTAGAAGGCAGTCAG	NA	False	NA	NA	False	NA	NA	NA	94900196	94899753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_-_94899821_94899966
ENSMUSG00000110593.2_75742850_75757320_1	chr8	-	1435	7	NIC	ENSMUSG00000110593.2	novel	259	2	NA	NA	3249	7875	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	163	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGATGCCTTTACAGACGT	NA	False	NA	NA	False	NA	NA	NA	75757320	75742849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_75743035_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
ENSMUSG00000110593.2_75760333_75796132_1	chr8	-	1650	15	NIC	ENSMUSG00000110593.2	novel	259	2	NA	NA	-35563	-9608	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	196	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACCCGTTGGCCAGCCCG	NA	False	NA	NA	False	NA	NA	NA	75796132	75760332	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr8_-_75760456_75774620_75774706_75776817_75776897_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75787060_75787182_75791021_75791098_75794149_75794210_75795723_75795764_75795877
ENSMUSG00000110605.2_129990122_129994049_1	chr8	+	168	2	ISM	ENSMUSG00000110605.2	ENSMUST00000212145.2	3767	3	-7	4300	0	-4300	5prime_fragment	FALSE	canonical	3	11	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGGTCTCTCATGATTCTT	NA	False	NA	NA	False	NA	NA	NA	129990121	129994049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_129990206_129993965
ENSMUSG00000110605.2_129990122_130008569_1	chr8	+	378	4	FSM	ENSMUSG00000110605.2	ENSMUST00000212180.2	1134	4	0	756	0	-756	multi-exon	FALSE	canonical	3	25	junction_3	15.5777619273972	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTGAGCAAACTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	129990121	130008569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_129990206_130007503_130007631_130007817_130007879_130008463
ENSMUSG00000110605.2_129990122_130008755_1	chr8	+	564	4	FSM	ENSMUSG00000110605.2	ENSMUST00000212180.2	1134	4	0	570	0	-570	multi-exon	FALSE	canonical	3	25	junction_3	15.5777619273972	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTGGTAAAGCTCTG	NA	False	NA	NA	False	NA	NA	NA	129990121	130008755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_129990206_130007503_130007631_130007817_130007879_130008463
ENSMUSG00000110605.2_129990122_130009073_2	chr8	+	389	4	NNC	ENSMUSG00000110605.2	novel	1134	4	NA	NA	0	-252	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	15.5777619273972	119	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGTAATCAGTGTGGTA	NA	False	NA	NA	False	NA	NA	NA	129990121	130009073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_129990206_130007503_130007631_130007817_130007879_130008956
ENSMUSG00000110615.2_124626039_124675994_1	chr8	+	3621	26	Fusion	ENSMUSG00000110615.2_ENSMUSG00000110547.2	novel	1895	2	NA	NA	3027	-3530	multi-exon	FALSE	non_canonical	0	0	junction_1	0	565	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCGGGAAGGCGCCTAGAG	NA	False	NA	NA	False	NA	NA	NA	124626038	124675994	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr8_+_124626250_124629337_124629427_124631290_124631356_124632952_124633034_124634494_124634614_124636622_124636759_124638487_124638647_124641236_124641371_124641913_124642166_124643022_124643123_124644168_124644292_124645510_124645736_124647586_124647682_124649087_124649252_124653868_124653961_124655982_124656141_124657594_124657743_124660105_124660254_124662825_124662897_124663569_124663726_124664873_124665045_124665778_124665914_124667773_124667882_124670993_124671098_124673231_124673351_124675736
ENSMUSG00000110649.2_20555718_20588308_1	chr8	+	996	4	NNC	ENSMUSG00000110649.2	novel	422	2	NA	NA	-20982	3971	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	4.49691252107735	374	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGTGTCTGTTAACAACA	5407	False	NA	NA	False	NA	NA	NA	20555717	20588308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_+_20555835_20576529_20576922_20584150_20584338_20588008
ENSMUSG00000110711.2_96590762_96615029_1	chr8	+	2378	10	Genic_Genomic	ENSMUSG00000110711.2	novel	1782	1	NA	NA	-6680	15806	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2344	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTCCCTGGGCGTGGCTA	NA	False	NA	NA	False	NA	NA	NA	96590761	96615029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_+_96591880_96593448_96593600_96596099_96596266_96597402_96597554_96598524_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
ENSMUSG00000110711.2_96590762_96615029_2	chr8	+	2379	10	Genic_Genomic	ENSMUSG00000110711.2	novel	1782	1	NA	NA	-6680	15806	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2334	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTCCCTGGGCGTGGCTA	NA	False	NA	NA	False	NA	NA	NA	96590761	96615029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_+_96591880_96593448_96593600_96596099_96596261_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
ENSMUSG00000110711.2_96595922_96615029_1	chr8	+	1293	8	Genic_Genomic	ENSMUSG00000110711.2	novel	1782	1	NA	NA	-1520	15806	multi-exon	FALSE	non_canonical	0	0	junction_1	0	177	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTCCCTGGGCGTGGCTA	NA	False	NA	NA	False	NA	NA	NA	96595921	96615029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr8_+_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
ENSMUSG00000110774.2_35098081_35111179_1	chr9	+	2255	7	NIC	ENSMUSG00000110774.2	novel	1118	3	NA	NA	-1878	6066	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	103	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCGTCCGGGAAGTGCCC	NA	False	NA	NA	False	NA	NA	NA	35098080	35111179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35110516_35110616_35111152
ENSMUSG00000110774.2_35098081_35111179_2	chr9	+	2261	7	NIC	ENSMUSG00000110774.2	novel	1118	3	NA	NA	-1878	6066	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	104	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCGTCCGGGAAGTGCCC	NA	False	NA	NA	False	NA	NA	NA	35098080	35111179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35110506_35110616_35111156
ENSMUSG00000110834.2_124031169_124044816_1	chr9	-	1698	4	NNC	ENSMUSG00000110834.2	novel	461	4	NA	NA	-47	1819	at_least_one_novel_splicesite	FALSE	canonical	3	60	junction_1	29.8477618740315	156	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	NNNNNNNNNNNNNNNNNNNN	NA	False	NA	NA	False	NA	NA	NA	124044816	124031168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_124032567_124033755_124033817_124033999_124034127_124044704
ENSMUSG00000110834.2_124033614_124044816_1	chr9	-	442	3	ISM	ENSMUSG00000110834.2	ENSMUST00000214845.2	461	4	-47	626	-47	-626	5prime_fragment	FALSE	canonical	3	93	junction_2	20	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAATGTCAGGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	124044816	124033613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr9_-_124033817_124033999_124034127_124044704
ENSMUSG00000110899.2_44966507_44986687_1	chr9	-	1354	6	Genic_Genomic	ENSMUSG00000110899.2	novel	3921	1	NA	NA	-20045	-3785	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGCCTCCCGGGGACCATG	505	False	NA	NA	False	NA	NA	NA	44986687	44966506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_-_44966617_44973338_44973506_44977636_44977848_44979504_44979671_44981953_44982018_44986051
ENSMUSG00000110899.2_44966507_44988734_1	chr9	-	3401	6	Genic_Genomic	ENSMUSG00000110899.2	novel	3921	1	NA	NA	-22092	-3785	multi-exon	FALSE	non_canonical	0	0	junction_1	0	83	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGCCTCCCGGGGACCATG	NA	False	NA	NA	False	NA	NA	NA	44988734	44966506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_-_44966617_44973338_44973506_44977636_44977848_44979504_44979671_44981953_44982018_44986051
ENSMUSG00000110919.2_78152832_78153882_1	chr9	+	537	3	NNC	ENSMUSG00000110919.2	novel	348	3	NA	NA	0	465	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	21227	12909	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78152831	78153882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_78152947_78153027_78153218_78153650
ENSMUSG00000110919.2_78152832_78153882_2	chr9	+	531	3	NNC	ENSMUSG00000110919.2	novel	348	3	NA	NA	0	465	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	21227	12644	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78152831	78153882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_78152947_78153027_78153212_78153650
ENSMUSG00000110919.2_78152832_78153882_3	chr9	+	538	3	NNC	ENSMUSG00000110919.2	novel	348	3	NA	NA	0	465	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1515.5	10501	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78152831	78153882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_78152951_78153035_78153212_78153639
ENSMUSG00000110919.2_78152832_78153882_4	chr9	+	591	4	NNC	ENSMUSG00000110919.2	novel	348	3	NA	NA	0	465	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	985.235448453256	7866	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78152831	78153882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_78152949_78153031_78153210_78153364_78153418_78153639
ENSMUSG00000110919.2_78152832_78153882_5	chr9	+	539	3	NNC	ENSMUSG00000110919.2	novel	348	3	NA	NA	0	465	at_least_one_novel_splicesite	FALSE	canonical	2	2057	junction_2	20198.5	14217	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78152831	78153882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_78152947_78153027_78153212_78153642
ENSMUSG00000110919.2_78152832_78153882_6	chr9	+	537	3	NNC	ENSMUSG00000110919.2	novel	348	3	NA	NA	0	465	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1515.5	9210	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78152831	78153882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_78152942_78153027_78153212_78153639
ENSMUSG00000110949.2_4050631_4052103_1	chr19	+	603	3	NIC	ENSMUSG00000110949.2	novel	787	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	39.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGGCATCTTCCGTGT	3564	False	NA	9	True	ATTAAA	-18	NA	4050630	4052103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_4050848_4051627_4051706_4051795
ENSMUSG00000111147.2_60959670_60966398_1	chr9	+	787	3	NNC	ENSMUSG00000111147.2	novel	3468	7	NA	NA	20176	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	2	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACATTTTTTTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60959669	60966398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_60959709_60960349_60960452_60965752
ENSMUSG00000111147.2_60959670_60966606_1	chr9	+	995	3	NNC	ENSMUSG00000111147.2	novel	3468	7	NA	NA	20176	208	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	2	273	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTCATTTTTATCTTATG	NA	False	NA	NA	False	NA	NA	NA	60959669	60966606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_60959709_60960349_60960452_60965752
ENSMUSG00000111149.2_34106210_34109562_1	chr10	-	476	3	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-35	693	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	46	188	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	-1	True	NA	NA	NA	34109562	34106209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_34106388_34106902_34107041_34109402
ENSMUSG00000111149.2_34106210_34109562_2	chr10	-	611	4	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-35	693	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	34.5671648951558	803	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	-1	True	NA	NA	NA	34109562	34106209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_34106388_34106902_34107071_34107314_34107420_34109402
ENSMUSG00000111149.2_34106210_34109562_3	chr10	-	506	3	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-35	693	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	27.5	459	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	-1	True	NA	NA	NA	34109562	34106209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_34106388_34106902_34107071_34109402
ENSMUSG00000111149.2_34106210_34109562_4	chr10	-	591	4	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-35	693	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_2	24.9131825880731	893	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	-1	True	NA	NA	NA	34109562	34106209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_34106388_34106902_34107071_34107314_34107400_34109402
ENSMUSG00000111423.2_78179280_78180328_4	chr9	+	507	3	NNC	ENSMUSG00000111423.2	novel	348	3	NA	NA	0	463	at_least_one_novel_splicesite	FALSE	canonical	3	470	junction_1	1215	6831	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	3338	False	NA	NA	False	AATAAA	-24	NA	78179279	78180328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_78179395_78179510_78179660_78180085
ENSMUSG00000111497.2_20978816_20984802_1	chr9	-	719	4	NIC	ENSMUSG00000079677.3	novel	812	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_3	142.14312036348	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984802	20978815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_20979222_20979325_20979414_20984370_20984478_20984684
ENSMUSG00000111497.2_20978816_20984802_2	chr9	-	774	5	FSM	ENSMUSG00000079677.3	ENSMUST00000010348.7	812	5	38	0	0	0	multi-exon	FALSE	canonical	3	216	junction_3	56.6171352154098	2757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984802	20978815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_20979222_20979325_20979414_20984370_20984478_20984559_20984615_20984684
ENSMUSG00000111497.2_20978816_20984802_3	chr9	-	856	4	FSM	ENSMUSG00000079677.3	ENSMUST00000215631.2	681	4	0	-175	0	0	multi-exon	FALSE	canonical	3	225	junction_3	51.1881062574327	1212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984802	20978815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_20979222_20979325_20979414_20984370_20984615_20984684
ENSMUSG00000111497.2_20978816_20984840_1	chr9	-	757	4	NIC	ENSMUSG00000079677.3	novel	812	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_3	142.14312036348	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984840	20978815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_-_20979222_20979325_20979414_20984370_20984478_20984684
ENSMUSG00000111497.2_20978816_20984840_2	chr9	-	894	4	FSM	ENSMUSG00000079677.3	ENSMUST00000215631.2	681	4	-38	-175	0	0	multi-exon	FALSE	canonical	3	225	junction_3	51.1881062574327	2448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984840	20978815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_20979222_20979325_20979414_20984370_20984615_20984684
ENSMUSG00000111497.2_20978816_20984840_3	chr9	-	964	3	FSM	ENSMUSG00000079677.3	ENSMUST00000216484.2	633	3	-22	-309	0	0	multi-exon	FALSE	canonical	3	331	junction_1	2.5	880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984840	20978815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_20979222_20979325_20979414_20984370
ENSMUSG00000111594.2_69998501_70037814_1	chr8	-	915	5	NNC	ENSMUSG00000111594.2	novel	1480	6	NA	NA	0	8953	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	42.0022320835453	79	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTGGTTTTGTTTTAAA	4887	False	NA	NA	False	AATAAA	-19	NA	70037814	69998500	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr8_-_69998639_70007479_70007614_70023190_70023486_70028637_70028852_70037680
ENSMUSG00000111658.2_61187951_61200906_1	chr9	-	388	3	NNC	ENSMUSG00000111658.2	novel	2678	5	NA	NA	185	-21442	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.5	27	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTCGGGAGGAAAGAGTT	NA	False	NA	NA	False	NA	NA	NA	61200906	61187950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_61188199_61193220_61193295_61200840
ENSMUSG00000111828.2_120321298_120324396_1	chr9	-	809	5	NNC	ENSMUSG00000111828.2	novel	1041	2	NA	NA	-2783	-1700	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	482	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGCCTCTAGCAGAGTCAG	NA	False	NA	NA	False	NA	NA	NA	120324396	120321297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_-_120321321_120321805_120321908_120323172_120323337_120323600_120323703_120323978
ENSMUSG00000111856.2_22038023_22042949_1	chr9	+	1430	5	NIC	ENSMUSG00000111856.2	novel	610	4	NA	NA	9055	-6103	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	299	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAGGAAGTGGGGTGGCC	NA	False	NA	NA	False	NA	NA	NA	22038022	22042949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22042796
ENSMUSG00000111856.2_22038023_22046987_1	chr9	+	1493	6	NNC	ENSMUSG00000111856.2	novel	610	4	NA	NA	9055	-2065	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	369	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTGCTCCAGAGTTCCT	NA	False	NA	NA	False	NA	NA	NA	22038022	22046987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr9_+_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22045889_22046027_22046908
ENSMUSG00000111888.2_14420887_14427103_1	chr10	+	678	2	FSM	ENSMUSG00000111888.2	ENSMUST00000220256.2	1003	2	653	-328	653	328	multi-exon	FALSE	canonical	3	15	junction_1	0	394	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTTATTACGCCTATTT	NA	False	NA	NA	False	AATAAA	-21	NA	14420886	14427103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_14421099_14426637
ENSMUSG00000111905.2_33872551_33895582_1	chr10	+	1046	7	Genic_Genomic	ENSMUSG00000111905.2	novel	1948	1	NA	NA	-22260	-1176	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2292	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCCGGCTCCGCGGGCCG	NA	False	NA	NA	False	NA	NA	NA	33872550	33895582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_33872845_33877132_33877196_33877653_33877787_33878419_33878558_33884988_33885120_33888067_33888134_33895361
ENSMUSG00000111905.2_33872551_33895582_2	chr10	+	1052	7	Genic_Genomic	ENSMUSG00000111905.2	novel	1948	1	NA	NA	-22260	-1176	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2365	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCCGGCTCCGCGGGCCG	NA	False	NA	NA	False	NA	NA	NA	33872550	33895582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_33872845_33877132_33877196_33877653_33877787_33878419_33878564_33884988_33885120_33888067_33888134_33895361
ENSMUSG00000112022.3_55188560_55201741_1	chr12	-	1244	8	FSM	ENSMUSG00000112022.3	ENSMUST00000219562.3	850	8	-60	-334	-60	334	multi-exon	FALSE	canonical	2	2	junction_7	67.4325059384779	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACAGCAAATATCTTGC	NA	False	NA	NA	False	AATAAA	-19	NA	55201741	55188559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_55189069_55190157_55190218_55192016_55192155_55195887_55196025_55196405_55196482_55196565_55196622_55197660_55197794_55201606
ENSMUSG00000112022.3_55197753_55201741_1	chr12	-	176	2	ISM	ENSMUSG00000112022.3	ENSMUST00000219562.3	850	8	-60	8859	-60	-8859	5prime_fragment	FALSE	canonical	2	2	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTGGATGGGCTGGAGA	NA	False	NA	NA	False	NA	NA	NA	55201741	55197752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_-_55197794_55201606
ENSMUSG00000112134.2_83180377_83187106_1	chr10	+	766	4	FSM	ENSMUSG00000112134.2	ENSMUST00000219407.2	603	4	0	-163	0	163	multi-exon	TRUE	canonical	2	3	junction_2	3.55902608401044	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTTCATGTTGCCTTT	NA	False	NA	NA	False	AATGAA	-15	NA	83180376	83187106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_83180563_83185918_83186165_83186398_83186496_83186869
ENSMUSG00000112160.2_81919187_81958758_2	chr10	+	718	5	NNC	ENSMUSG00000112160.2	novel	2726	4	NA	NA	0	11708	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_4	9.08295106229247	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCATTGTTTCCTTGCCTTC	NA	False	NA	8	True	NA	NA	NA	81919186	81958758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_81919247_81943643_81943771_81943972_81944034_81944572_81944605_81958320
ENSMUSG00000112227.2_15667417_15682813_2	chr10	+	570	2	NNC	ENSMUSG00000112227.2	novel	628	3	NA	NA	-108	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	0	351	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGACTAAAGATCAAGTATT	NA	False	NA	NA	False	NA	NA	NA	15667416	15682813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_15667792_15682618
ENSMUSG00000112261.2_95280617_95297086_1	chr10	-	1109	2	NIC	ENSMUSG00000112261.2	novel	660	3	NA	NA	0	561	combination_of_known_splicesites	FALSE	canonical	3	30	junction_1	0	328	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCTTCAGAAACCCTAAG	1553	False	NA	NA	False	AAGAAA	-10	NA	95297086	95280616	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_95281620_95296980
ENSMUSG00000112278.2_80481983_80482710_1	chr12	+	557	2	Genic_Genomic	ENSMUSG00000112278.2	novel	728	1	NA	NA	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAGGTCTTTTTTTATAT	1703	False	NA	NA	False	ATTAAA	-14	NA	80481982	80482710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr12_+_80482087_80482257
ENSMUSG00000112294.2_122949133_123032831_1	chr10	+	3234	22	NIC	ENSMUSG00000112294.2	novel	625	3	NA	NA	-83467	-2492	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	338	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGTAGCGGAGGCGGCGG	4407	False	NA	NA	False	NA	NA	NA	122949132	123032831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122988945_122989033_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
ENSMUSG00000112339.2_81552873_81654785_1	chr10	-	996	3	Fusion	ENSMUSG00000112740.2_ENSMUSG00000112339.2	novel	331	2	NA	NA	-11	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2103	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCCAATTTTGTTATGAA	NA	False	NA	NA	False	NA	NA	NA	81654785	81552872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr10_-_81553006_81553205_81553503_81654219
ENSMUSG00000112400.2_95729305_95733232_1	chr10	+	971	3	FSM	ENSMUSG00000112400.2	ENSMUST00000218392.2	858	3	0	-113	0	113	multi-exon	FALSE	canonical	3	16	junction_1	58.5	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTTTGGAGGACCGAA	NA	False	NA	NA	False	NA	NA	NA	95729304	95733232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_95729528_95730062_95730152_95732573
ENSMUSG00000112400.2_95729305_95733232_2	chr10	+	1091	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	0	113	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	66.5	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTTTGGAGGACCGAA	NA	False	NA	NA	False	NA	NA	NA	95729304	95733232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_95729523_95729937_95730152_95732573
ENSMUSG00000112400.2_95729305_95733232_4	chr10	+	966	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	0	113	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	59.5	292	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTTTGGAGGACCGAA	NA	False	NA	NA	False	NA	NA	NA	95729304	95733232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_95729523_95730062_95730152_95732573
ENSMUSG00000112400.2_95729305_95733232_5	chr10	+	1060	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	0	113	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	59	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTTTGGAGGACCGAA	NA	False	NA	NA	False	NA	NA	NA	95729304	95733232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_95729523_95729968_95730152_95732573
ENSMUSG00000112400.2_95729305_95733737_2	chr10	+	1596	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	0	618	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	66.5	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGAAACTCAGAATATCAT	NA	False	NA	25	True	AATAAA	-18	NA	95729304	95733737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_95729523_95729937_95730152_95732573
ENSMUSG00000112400.2_95729305_95733737_4	chr10	+	1471	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	0	618	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	59.5	568	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGAAACTCAGAATATCAT	NA	False	NA	25	True	AATAAA	-18	NA	95729304	95733737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_95729523_95730062_95730152_95732573
ENSMUSG00000112400.2_95729414_95733737_1	chr10	+	1456	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	109	618	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	59	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGAAACTCAGAATATCAT	NA	False	NA	25	True	AATAAA	-18	NA	95729413	95733737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_95729523_95729968_95730152_95732573
ENSMUSG00000112449.2_55201889_55235125_1	chr12	+	2413	16	FSM	ENSMUSG00000112449.2	ENSMUST00000110708.4	3646	16	0	1233	0	-1233	multi-exon	FALSE	canonical	3	704	junction_7	105.372650889856	2100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCGTTAACTTTCTTTA	2354	False	NA	NA	False	AATAAA	-20	NA	55201888	55235125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_55202366_55211014_55211125_55211980_55212073_55213093_55213179_55217659_55217765_55218953_55219021_55219100_55219159_55221757_55221909_55223184_55223334_55223667_55223769_55224312_55224400_55227035_55227110_55227461_55227571_55230346_55230518_55232930_55233027_55234644
ENSMUSG00000112449.2_55202155_55213746_1	chr12	+	693	5	NIC	ENSMUSG00000112449.2	novel	428	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	394.46704551838	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCTGTGTGTCTGTGTC	2620	False	NA	NA	False	AATAAA	-22	NA	55202154	55213746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_+_55202366_55211014_55211125_55211980_55212073_55213093_55213179_55213551
ENSMUSG00000112449.2_55202155_55213746_2	chr12	+	1066	4	ISM	ENSMUSG00000112449.2	ENSMUST00000110708.4	3646	16	266	22612	0	0	5prime_fragment	FALSE	canonical	3	808	junction_1	80.4335474510204	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCTGTGTGTCTGTGTC	2620	False	NA	NA	False	AATAAA	-22	NA	55202154	55213746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr12_+_55202366_55211014_55211125_55211980_55212073_55213093
ENSMUSG00000112449.2_55202155_55235125_1	chr12	+	2147	16	FSM	ENSMUSG00000112449.2	ENSMUST00000110708.4	3646	16	266	1233	0	-1233	multi-exon	FALSE	canonical	3	704	junction_7	105.372650889856	1914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCGTTAACTTTCTTTA	2620	False	NA	NA	False	AATAAA	-20	NA	55202154	55235125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_55202366_55211014_55211125_55211980_55212073_55213093_55213179_55217659_55217765_55218953_55219021_55219100_55219159_55221757_55221909_55223184_55223334_55223667_55223769_55224312_55224400_55227035_55227110_55227461_55227571_55230346_55230518_55232930_55233027_55234644
ENSMUSG00000112654.2_21171917_21244784_1	chr10	-	2750	18	Genic_Genomic	ENSMUSG00000112654.2	novel	1018	4	NA	NA	-26828	23070	multi-exon	FALSE	non_canonical	0	0	junction_1	0	684	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGCCGAGCGTCCGCGCA	NA	False	NA	NA	False	NA	NA	NA	21244784	21171916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_-_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
ENSMUSG00000112654.2_21171929_21230815_1	chr10	-	1868	13	Genic_Genomic	ENSMUSG00000112654.2	novel	1018	4	NA	NA	-12859	23058	multi-exon	FALSE	non_canonical	0	0	junction_1	0	65	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGCCAGGCCTCTGCGCCG	NA	False	NA	NA	False	NA	NA	NA	21230815	21171928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_-_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537
ENSMUSG00000112742.2_130213190_130422364_1	chr10	+	401	3	NNC	ENSMUSG00000112742.2	novel	415	3	NA	NA	-165026	14702	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2765	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGTCTTGGCTACATT	NA	False	NA	NA	False	NA	NA	NA	130213189	130422364	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_130213316_130407478_130407540_130422150
ENSMUSG00000112760.2_81711985_81844751_3	chr10	-	1000	3	NNC	ENSMUSG00000112760.2	novel	337	2	NA	NA	-132250	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	82	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCCAATTTTGTTATGAA	8531	False	NA	NA	False	NA	NA	NA	81844751	81711984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_-_81712118_81712315_81712568_81844136
ENSMUSG00000112819.2_4602547_4603808_1	chr12	-	317	2	NIC	ENSMUSG00000112819.2	novel	457	3	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	3	47	junction_1	0	2799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	4603808	4602546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr12_-_4602746_4603690
ENSMUSG00000112819.2_4602547_4603808_2	chr12	-	464	3	NNC	ENSMUSG00000112819.2	novel	457	3	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	5	1166	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	4603808	4602546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_4602731_4603013_4603176_4603690
ENSMUSG00000112883.2_70682704_70689652_1	chr10	+	655	3	NIC	ENSMUSG00000112883.2	novel	464	4	NA	NA	-143	96	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	0	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATCTGCCTTTCCTACCC	NA	False	NA	NA	False	AATAAA	-15	NA	70682703	70689652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_70682951_70688008_70688253_70689488
ENSMUSG00000112894.2_120006113_120037494_1	chr10	+	932	6	NIC	ENSMUSG00000112894.2	novel	597	2	NA	NA	1559	31244	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACGTAGGGAGCCGCTCC	NA	False	NA	NA	False	NA	NA	NA	120006112	120037494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_120006288_120012135_120012288_120013972_120014028_120014600_120014705_120018430_120018614_120037231
ENSMUSG00000112964.2_74596398_74610811_1	chr13	-	580	4	FSM	ENSMUSG00000112964.2	ENSMUST00000222455.2	1614	4	27	1007	1	0	multi-exon	FALSE	canonical	3	37	junction_3	3.29983164553722	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGAATGTAATCAGTGT	6496	False	NA	NA	False	NA	NA	NA	74610811	74596397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_74596679_74598074_74598136_74598354_74598482_74610700
ENSMUSG00000112964.2_74596526_74610811_1	chr13	-	452	4	FSM	ENSMUSG00000112964.2	ENSMUST00000222455.2	1614	4	27	1135	1	-128	multi-exon	FALSE	canonical	3	37	junction_3	3.29983164553722	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAGTCTCCAGTATCATA	6496	False	NA	NA	False	NA	NA	NA	74610811	74596525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_74596679_74598074_74598136_74598354_74598482_74610700
ENSMUSG00000112980.2_116366006_116368830_1	chr12	-	2502	2	FSM	ENSMUSG00000112980.2	ENSMUST00000220477.2	2941	2	0	439	0	-439	multi-exon	FALSE	canonical	2	13	junction_1	0	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTCTCAGTGTCTCGC	NA	False	NA	2	True	NA	NA	NA	116368830	116366005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_116368264_116368586
ENSMUSG00000112980.2_116367044_116368830_1	chr12	-	1464	2	FSM	ENSMUSG00000112980.2	ENSMUST00000220477.2	2941	2	0	1477	0	-1477	multi-exon	FALSE	canonical	2	13	junction_1	0	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGACTCTGGCAGCAATCT	NA	False	NA	NA	False	NA	NA	NA	116368830	116367043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_116368264_116368586
ENSMUSG00000113019.2_74656133_74670580_1	chr13	-	1979	4	FSM	ENSMUSG00000113019.2	ENSMUST00000220784.2	395	4	0	-1584	0	1584	multi-exon	FALSE	canonical	3	31	junction_3	21.249836600679	1372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCTTGGCTACATTT	NA	False	NA	NA	False	NA	NA	NA	74670580	74656132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_74657816_74659212_74659274_74659474_74659602_74670472
ENSMUSG00000113019.2_74657452_74670580_1	chr13	-	660	4	FSM	ENSMUSG00000113019.2	ENSMUST00000220784.2	395	4	0	-265	0	265	multi-exon	FALSE	canonical	3	31	junction_3	21.249836600679	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTATGAGTGTGATCAATG	NA	False	NA	NA	False	NA	NA	NA	74670580	74657451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_74657816_74659212_74659274_74659474_74659602_74670472
ENSMUSG00000113081.2_62403220_62421101_1	chr13	+	447	3	NNC	ENSMUSG00000113081.2	novel	1044	3	NA	NA	-8160	0	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	232	616	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATTGCAGGTATCTGAA	NA	False	NA	13	True	NA	NA	NA	62403219	62421101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_62403345_62420579_62420707_62420906
ENSMUSG00000113204.2_74727299_74739510_1	chr13	-	588	4	NIC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18643	178	combination_of_known_splicesites	FALSE	canonical	3	28	junction_3	25.3508711224421	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTATGAATGTCATCAGTG	NA	False	NA	NA	False	NA	NA	NA	74739510	74727298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_74727579_74728971_74729033_74729232_74729360_74739390
ENSMUSG00000113209.2_54907081_54909604_1	chr12	+	1391	4	NNC	ENSMUSG00000113209.2	novel	569	2	NA	NA	-2351	-845	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1313	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGGTCGGCGGCGGGCAG	NA	False	NA	NA	False	NA	NA	NA	54907080	54909604	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_54908023_54908121_54908187_54908310_54908619_54909528
ENSMUSG00000113406.2_65480981_65496411_1	chr13	-	467	4	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	0	3055	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	43.3666538560063	585	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCCTTGGTCATGAAATC	7281	False	NA	1	True	NA	NA	NA	65496411	65480980	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_65481146_65488362_65488424_65488791_65488919_65496297
ENSMUSG00000113406.2_65480981_65562937_1	chr13	-	455	4	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	-66526	3055	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	42.8200368467328	883	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCCTTGGTCATGAAATC	NA	False	NA	1	True	NA	NA	NA	65562937	65480980	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_65481146_65488362_65488424_65488791_65488919_65562835
ENSMUSG00000113406.2_65483455_65496411_1	chr13	-	1170	4	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	0	581	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	42.9055810925442	538	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGTCCTGTGTTTACT	7281	False	NA	NA	False	NA	NA	NA	65496411	65483454	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_65484323_65488362_65488424_65488791_65488919_65496297
ENSMUSG00000113450.2_62604149_62614621_1	chr13	-	641	3	ISM	ENSMUSG00000113450.2	ENSMUST00000221747.2	2492	4	25	3319	-1	-1422	5prime_fragment	FALSE	canonical	3	39	junction_2	0.5	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGACG	9537	False	NA	NA	False	NA	NA	NA	62614621	62604148	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_62604562_62604746_62604874_62614520
ENSMUSG00000113515.2_30972584_30973659_1	chr13	-	412	3	NNC	ENSMUSG00000113515.2	novel	5348	2	NA	NA	5550	-4168	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCAGAGGTGGCACCACC	463	False	NA	NA	False	NA	NA	NA	30973659	30972583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_30972733_30972951_30973089_30973533
ENSMUSG00000113529.2_84332139_84360879_1	chr12	-	1365	10	Genic_Genomic	ENSMUSG00000113529.2	novel	3223	1	NA	NA	2971	28489	multi-exon	FALSE	non_canonical	0	0	junction_1	0	288	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTTAATCCAGCTTCCGG	941	False	NA	NA	False	NA	NA	NA	84360879	84332138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr12_-_84332308_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
ENSMUSG00000113529.2_84332139_84360879_2	chr12	-	1308	10	Genic_Genomic	ENSMUSG00000113529.2	novel	3223	1	NA	NA	2971	28489	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1072	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTTAATCCAGCTTCCGG	941	False	NA	NA	False	NA	NA	NA	84360879	84332138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr12_-_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
ENSMUSG00000113529.2_84332139_84362606_1	chr12	-	3035	10	Genic_Genomic	ENSMUSG00000113529.2	novel	3223	1	NA	NA	1244	28489	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1539	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTTAATCCAGCTTCCGG	NA	False	NA	NA	False	NA	NA	NA	84362606	84332138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr12_-_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
ENSMUSG00000113555.2_86892552_86893280_1	chr12	-	519	2	NNC	ENSMUSG00000113555.2	novel	483	2	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGTACACAAAGAAATAAAAA	3742	False	NA	NA	False	NA	NA	NA	86893280	86892551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_86892980_86893189
ENSMUSG00000113555.2_86892552_86893280_2	chr12	-	522	2	NNC	ENSMUSG00000113555.2	novel	483	2	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGTACACAAAGAAATAAAAA	3742	False	NA	NA	False	NA	NA	NA	86893280	86892551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_86892976_86893182
ENSMUSG00000113555.2_86892685_86893280_1	chr12	-	389	2	FSM	ENSMUSG00000113555.2	ENSMUST00000222765.2	483	2	-39	133	-39	-133	multi-exon	TRUE	canonical	0	0	junction_1	0	1210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGCCAAAGAGAAGGGCA	3742	False	NA	NA	False	NA	NA	NA	86893280	86892684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_86892971_86893177
ENSMUSG00000113559.2_66126381_66256503_1	chr13	-	546	3	NNC	ENSMUSG00000113559.2	novel	1005	4	NA	NA	-125898	-1847	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_2	76.5	1470	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	66256503	66126380	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66126651_66126851_66126979_66256354
ENSMUSG00000113566.2_62245562_62259861_1	chr13	+	902	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222089.2	478	4	0	-424	0	0	multi-exon	FALSE	canonical	3	66	junction_3	212.90112467737	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGTATATCCTTGGAC	NA	False	NA	4	True	NA	NA	NA	62245561	62259861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259238
ENSMUSG00000113566.2_62245562_62260150_1	chr13	+	1561	5	NNC	ENSMUSG00000113566.2	novel	886	4	NA	NA	0	289	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_2	230.419590095981	2037	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTGGTAATGGTGTC	NA	False	NA	7	True	NA	NA	NA	62245561	62260150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_62245653_62250218_62250513_62254561_62254689_62254881_62254943_62259162
ENSMUSG00000113566.2_62245562_62260150_2	chr13	+	1448	4	NNC	ENSMUSG00000113566.2	novel	478	4	NA	NA	0	289	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	227.404680886056	3063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTGGTAATGGTGTC	NA	False	NA	7	True	NA	NA	NA	62245561	62260150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_62245653_62254561_62254689_62254881_62254943_62258981
ENSMUSG00000113566.2_62245562_62260150_3	chr13	+	1191	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222089.2	478	4	0	-713	0	289	multi-exon	FALSE	canonical	3	66	junction_3	212.90112467737	1112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTGGTAATGGTGTC	NA	False	NA	7	True	NA	NA	NA	62245561	62260150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259238
ENSMUSG00000113566.2_62245562_62260150_4	chr13	+	1267	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222324.2	886	4	-22	-359	0	289	multi-exon	FALSE	canonical	3	481	junction_1	27.9801516952444	3423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTGGTAATGGTGTC	NA	False	NA	7	True	NA	NA	NA	62245561	62260150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259162
ENSMUSG00000113566.2_62245562_62260832_1	chr13	+	1949	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222324.2	886	4	-22	-1041	0	971	multi-exon	FALSE	canonical	3	481	junction_1	27.9801516952444	4256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGTGCATATTTGTGT	NA	False	NA	NA	False	ATTAAA	-38	NA	62245561	62260832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259162
ENSMUSG00000113572.2_71315518_71316362_1	chr12	-	492	2	NNC	ENSMUSG00000113572.2	novel	1078	2	NA	NA	769	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	0	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAAGGTTGTAGCGGCTG	NA	False	NA	NA	False	NA	NA	NA	71316362	71315517	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_71315914_71316266
ENSMUSG00000113589.2_8902705_8921080_1	chr13	+	1612	5	Genic_Genomic	ENSMUSG00000113589.2	novel	1765	1	NA	NA	-17672	-1061	multi-exon	FALSE	non_canonical	0	0	junction_1	0	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGAAGTCCCGCCCTCAGA	NA	False	NA	NA	False	NA	NA	NA	8902704	8921080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920905
ENSMUSG00000113623.2_62549874_62564867_1	chr13	-	1563	3	NIC	ENSMUSG00000113623.2	novel	633	4	NA	NA	-10	433	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	60.5	1558	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGTGCATATTTGTGT	NA	False	NA	NA	False	ATTAAA	-38	NA	62564867	62549873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_-_62551194_62555482_62555610_62564751
ENSMUSG00000113626.2_61952080_61974328_1	chr13	+	482	2	NNC	ENSMUSG00000113626.2	novel	353	2	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCCTCCTGAGAGAATAAG	NA	False	NA	NA	False	NA	NA	NA	61952079	61974328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_61952356_61974122
ENSMUSG00000113642.2_17942189_17951187_1	chr12	+	448	3	NNC	ENSMUSG00000113642.2	novel	550	2	NA	NA	-8546	-161278	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_1	55.5	643	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTATTTATTTATTATAT	NA	False	NA	NA	False	NA	NA	NA	17942188	17951187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_17942310_17950660_17950788_17950987
ENSMUSG00000113679.2_100256544_100268574_1	chr12	+	1246	4	NNC	ENSMUSG00000113679.2	novel	1230	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_3	2.94392028877595	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTAGTCAAGTGCCTCG	NA	False	NA	NA	False	ATTAAA	-21	NA	100256543	100268574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_100256684_100261887_100261990_100267215_100267355_100267709
ENSMUSG00000113760.2_66098405_66186860_1	chr13	+	553	3	NNC	ENSMUSG00000113760.2	novel	569	4	NA	NA	-81618	-1201	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_1	37	818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTCTGTATAGTCTCATA	NA	False	NA	NA	False	NA	NA	NA	66098404	66186860	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_66098504_66186206_66186334_66186533
ENSMUSG00000113760.2_66098405_66187927_1	chr13	+	426	4	NNC	ENSMUSG00000113760.2	novel	569	4	NA	NA	-81618	-134	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_1	76.460592609672	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTTCCTCTCACAATTG	NA	False	NA	NA	False	NA	NA	NA	66098404	66187927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_66098504_66186206_66186334_66186533_66186595_66187788
ENSMUSG00000113760.2_66180023_66187927_1	chr13	+	435	4	FSM	ENSMUSG00000113760.2	ENSMUST00000221828.2	569	4	0	134	0	-134	multi-exon	FALSE	canonical	3	110	junction_1	62.055530687352	655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTTCCTCTCACAATTG	NA	False	NA	NA	False	NA	NA	NA	66180022	66187927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_66180131_66186206_66186334_66186533_66186595_66187788
ENSMUSG00000113760.2_66180023_66207739_1	chr13	+	774	4	NNC	ENSMUSG00000113760.2	novel	569	4	NA	NA	0	19678	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	60.6758234847749	329	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTTCTCGAGGTATAGG	NA	False	NA	NA	False	NA	NA	NA	66180022	66207739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_66180131_66186206_66186334_66186533_66186595_66207261
ENSMUSG00000113760.2_66180023_66207739_2	chr13	+	843	5	NNC	ENSMUSG00000113760.2	novel	569	4	NA	NA	0	19678	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	64.0722248716244	365	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTTCTCGAGGTATAGG	NA	False	NA	NA	False	NA	NA	NA	66180022	66207739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_66180131_66186206_66186334_66186533_66186595_66206085_66206155_66207261
ENSMUSG00000113816.2_64439641_64460524_1	chr13	+	981	6	Genic_Genomic	ENSMUSG00000113816.2	novel	1481	2	NA	NA	750	14671	multi-exon	FALSE	non_canonical	0	0	junction_1	0	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCACCGACCGCGGGGGGC	6869	False	NA	NA	False	NA	NA	NA	64439640	64460524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_64440043_64445068_64445201_64456635_64456742_64456906_64456961_64460080_64460150_64460306
ENSMUSG00000113902.2_101934361_101941958_1	chr12	-	291	3	FSM	ENSMUSG00000113902.2	ENSMUST00000221191.2	511	3	228	-8	228	0	multi-exon	FALSE	canonical	3	411	junction_2	787	9045	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAATTTAAAGTGTGATT	NA	False	NA	-9	True	AATAAA	-20	NA	101941958	101934360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_101934470_101935751_101935894_101941918
ENSMUSG00000113949.2_80438726_80451618_1	chr10	+	1788	7	NNC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	242.047802900355	1111	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	14	True	AATAAA	-14	NA	80438725	80451618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80438784_80444636_80444685_80445168_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ENSMUSG00000113949.2_80438726_80451618_2	chr10	+	1357	3	NIC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	0	1	combination_of_known_splicesites	TRUE	canonical	2	9	junction_1	345	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	14	True	AATAAA	-14	NA	80438725	80451618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_80438784_80448175_80448294_80450437
ENSMUSG00000113949.2_80438726_80451618_3	chr10	+	1759	7	NIC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	31	junction_3	238.087285581477	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	14	True	AATAAA	-14	NA	80438725	80451618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_+_80438784_80444636_80444685_80445163_80445259_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ENSMUSG00000113949.2_80438726_80451618_4	chr10	+	1731	7	NNC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	232.090260219788	370	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	14	True	AATAAA	-14	NA	80438725	80451618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr10_+_80438784_80444636_80444685_80445225_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ENSMUSG00000113949.2_80439086_80451618_1	chr10	+	1797	7	FSM	ENSMUSG00000113949.2	ENSMUST00000180350.3	1271	7	295	-821	295	1	multi-exon	FALSE	canonical	3	35	junction_1	236.742945453972	761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	14	True	AATAAA	-14	NA	80439085	80451618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80439148_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ENSMUSG00000113955.2_65639603_65651601_1	chr13	-	513	3	NNC	ENSMUSG00000113955.2	novel	364	2	NA	NA	-6994	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	204	3316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCCTTCGTTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	65651601	65639602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_65639775_65644415_65644596_65651440
ENSMUSG00000113955.2_65639603_65651601_2	chr13	-	518	3	NNC	ENSMUSG00000113955.2	novel	364	2	NA	NA	-6994	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	204	4517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCCTTCGTTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	65651601	65639602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_65639775_65644415_65644605_65651444
ENSMUSG00000113955.2_65639603_65787439_1	chr13	-	510	3	NNC	ENSMUSG00000113955.2	novel	364	2	NA	NA	-142832	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	204	3947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCCTTCGTTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	65787439	65639602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_65639775_65644415_65644605_65787290
ENSMUSG00000114136.2_12312184_12423108_1	chr12	-	1477	12	Genic_Genomic	ENSMUSG00000114136.2	novel	1341	5	NA	NA	19508	89339	multi-exon	FALSE	non_canonical	0	0	junction_1	0	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGATGCCTCTCCGGCGGC	NA	False	NA	NA	False	NA	NA	NA	12423108	12312183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr12_-_12312240_12354181_12354324_12390679_12390760_12408045_12408168_12409213_12409320_12411435_12411573_12412015_12412094_12412252_12412370_12412461_12412542_12414720_12414848_12419894_12419966_12422747
ENSMUSG00000114172.2_62788918_62801026_1	chr13	-	621	4	NNC	ENSMUSG00000114172.2	novel	1732	3	NA	NA	-9960	-1218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	18.8561808316413	202	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTAGTCTCCAAACACATAT	NA	False	NA	3	True	NA	NA	NA	62801026	62788917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_62789244_62790690_62790749_62790936_62791064_62800916
ENSMUSG00000114172.2_62789044_62801026_1	chr13	-	495	4	NNC	ENSMUSG00000114172.2	novel	1732	3	NA	NA	-9960	-1344	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	18.8561808316413	84	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTATGAATGTAATCAATG	NA	False	NA	NA	False	NA	NA	NA	62801026	62789043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_62789244_62790690_62790749_62790936_62791064_62800916
ENSMUSG00000114203.2_99114153_99133993_1	chr13	+	1044	2	NNC	ENSMUSG00000114203.2	novel	960	2	NA	NA	-16506	67	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	52	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAAGGCTGTCAGTCCCTG	NA	False	NA	NA	False	AATAAA	-22	NA	99114152	99133993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_99114293_99133089
ENSMUSG00000114235.2_36387148_36433604_1	chr19	-	1638	10	Genic_Genomic	ENSMUSG00000114235.2	novel	1120	2	NA	NA	-5047	39244	multi-exon	FALSE	non_canonical	0	0	junction_1	0	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGCGATAGGGCGCGGCGG	NA	False	NA	NA	False	NA	NA	NA	36433604	36387147	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr19_-_36387310_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36427963_36428024_36433020
ENSMUSG00000114270.2_36080687_36089986_1	chr13	+	1033	8	NNC	ENSMUSG00000114270.2	novel	1036	2	NA	NA	-8753	-15386	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	414	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGCGCATGCTGGGAAT	NA	False	NA	NA	False	NA	NA	NA	36080686	36089986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36087670_36087740_36088401_36088547_36089945
ENSMUSG00000114270.2_36080687_36090342_1	chr13	+	1149	8	NNC	ENSMUSG00000114270.2	novel	1036	2	NA	NA	-8753	-15030	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2620	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCGCCTCCCGGCCCGCC	NA	False	NA	NA	False	NA	NA	NA	36080686	36090342	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_36080909_36082547_36082683_36082797_36082991_36085281_36085415_36085995_36086092_36087670_36087740_36088401_36088547_36090186
ENSMUSG00000114270.2_36080687_36090342_2	chr13	+	1143	8	NNC	ENSMUSG00000114270.2	novel	1036	2	NA	NA	-8753	-15030	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1232	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCGCCTCCCGGCCCGCC	NA	False	NA	NA	False	NA	NA	NA	36080686	36090342	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36086000_36086092_36087670_36087740_36088401_36088547_36090186
ENSMUSG00000114270.2_36080687_36090342_3	chr13	+	1079	7	NIC	ENSMUSG00000114270.2	novel	1036	2	NA	NA	-8753	-15030	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	113	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCGCCTCCCGGCCCGCC	NA	False	NA	NA	False	NA	NA	NA	36080686	36090342	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36088401_36088547_36090186
ENSMUSG00000114319.2_39008206_39009694_1	chr13	-	349	2	ISM	ENSMUSG00000114319.2	ENSMUST00000225304.2	498	3	0	10986	0	-10986	5prime_fragment	FALSE	canonical	1	1	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATTTTCTATTAGCATAC	NA	False	NA	NA	False	AATAAA	-13	NA	39009694	39008205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_39008419_39009558
ENSMUSG00000114327.2_66829018_66856896_1	chr13	+	801	4	NNC	ENSMUSG00000114327.2	novel	818	2	NA	NA	0	-125	at_least_one_novel_splicesite	TRUE	canonical	3	5	junction_3	19.5959179422654	446	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGTCGTCTGTTCATGAT	NA	False	NA	NA	False	NA	NA	NA	66829017	66856896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_66829202_66843359_66843401_66843752_66843820_66856387
ENSMUSG00000114327.2_66829129_66856896_1	chr13	+	690	4	NNC	ENSMUSG00000114327.2	novel	818	2	NA	NA	111	-125	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_3	19.5959179422654	282	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGTCGTCTGTTCATGAT	NA	False	NA	NA	False	NA	NA	NA	66829128	66856896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_66829202_66843359_66843401_66843752_66843820_66856387
ENSMUSG00000114353.2_66820742_66950624_1	chr13	-	550	3	Fusion	ENSMUSG00000074830.5_ENSMUSG00000114353.2	novel	1562	3	NA	NA	0	-1907	multi-exon	FALSE	canonical	3	69	junction_1	44	560	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTCTGTATAGTCTCATA	NA	False	NA	NA	False	NA	NA	NA	66950624	66820741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr13_-_66821069_66942962_66943090_66950528
ENSMUSG00000114353.2_66935952_66950624_1	chr13	-	449	4	NNC	ENSMUSG00000114353.2	novel	464	4	NA	NA	0	4182	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	75.4644876010491	178	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCTTGGTCATGGAATC	NA	False	NA	NA	False	NA	NA	NA	66950624	66935951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66936117_66942701_66942763_66942962_66943090_66950528
ENSMUSG00000114353.2_66939250_66950624_1	chr13	-	451	4	NNC	ENSMUSG00000114353.2	novel	464	4	NA	NA	0	884	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	69.8108555710038	735	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	1	True	NA	NA	NA	66950624	66939249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66939417_66942701_66942763_66942962_66943090_66950528
ENSMUSG00000114353.2_66939250_66950624_2	chr13	-	2630	4	FSM	ENSMUSG00000114353.2	ENSMUST00000224917.2	464	4	0	-2166	0	884	multi-exon	FALSE	canonical	3	149	junction_1	5.73488351136175	1426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	1	True	NA	NA	NA	66950624	66939249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_66941596_66942701_66942763_66942962_66943090_66950528
ENSMUSG00000114353.2_66939250_66950624_3	chr13	-	2379	5	NNC	ENSMUSG00000114353.2	novel	464	4	NA	NA	0	884	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	67.8762661023719	1276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	1	True	NA	NA	NA	66950624	66939249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66940626_66940876_66941596_66942701_66942763_66942962_66943090_66950528
ENSMUSG00000114353.2_66941316_66950624_1	chr13	-	564	4	FSM	ENSMUSG00000114353.2	ENSMUST00000224917.2	464	4	0	-100	0	100	multi-exon	FALSE	canonical	3	149	junction_1	5.73488351136175	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTATGAATGTAATCAATG	NA	False	NA	NA	False	NA	NA	NA	66950624	66941315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_66941596_66942701_66942763_66942962_66943090_66950528
ENSMUSG00000114353.2_66942436_66950624_1	chr13	-	550	3	ISM	ENSMUSG00000114353.2	ENSMUST00000224917.2	464	4	0	1020	0	-1020	5prime_fragment	FALSE	canonical	3	157	junction_2	3	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTCTGTATAGTCTCATA	NA	False	NA	NA	False	NA	NA	NA	66950624	66942435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr13_-_66942763_66942962_66943090_66950528
ENSMUSG00000114426.2_66711974_66724696_1	chr13	+	465	4	NNC	ENSMUSG00000114426.2	novel	1561	3	NA	NA	-9011	721	at_least_one_novel_splicesite	FALSE	canonical	3	76	junction_3	16.3299316185545	2741	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	5534	False	NA	11	True	NA	NA	NA	66711973	66724696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_66712084_66720982_66721110_66721308_66721370_66724529
ENSMUSG00000114426.2_66711974_66744965_1	chr13	+	625	4	NNC	ENSMUSG00000114426.2	novel	1561	3	NA	NA	-9011	20990	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	48.7715764217917	1186	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTGTGTATAGTCTCATA	5534	False	NA	NA	False	NA	NA	NA	66711973	66744965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_66712084_66720982_66721110_66721308_66721370_66744638
ENSMUSG00000114493.3_56221435_56244015_1	chr13	+	1215	5	Genic_Genomic	ENSMUSG00000114493.3	novel	2677	6	NA	NA	71357	11353	multi-exon	FALSE	non_canonical	0	0	junction_1	0	545	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCCGCCTTGCTCACTTC	NA	False	NA	NA	False	NA	NA	NA	56221434	56244015	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936
ENSMUSG00000114616.2_66392084_66448940_1	chr13	+	512	3	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	0	-4287	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_2	10	759	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCTTTTGGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	66392083	66448940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_66392214_66448255_66448445_66448747
ENSMUSG00000114616.2_66392084_66599466_1	chr13	+	488	3	FSM	ENSMUSG00000114616.2	ENSMUST00000225647.2	360	3	0	-128	0	128	multi-exon	FALSE	canonical	3	35	junction_1	18.5	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGCCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	66392083	66599466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_66392214_66448255_66448445_66599297
ENSMUSG00000114616.2_66439439_66453252_1	chr13	+	498	3	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47355	25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	29.5	1029	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGCCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	66439438	66453252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_66439588_66448264_66448445_66453083
ENSMUSG00000114616.2_66439439_66453252_2	chr13	+	488	3	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47355	25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	29.5	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGCCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	66439438	66453252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_66439592_66448278_66448445_66453083
ENSMUSG00000114616.2_66439439_66599466_1	chr13	+	507	3	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47355	128	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	29	2393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGCCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	66439438	66599466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_66439588_66448255_66448445_66599297
ENSMUSG00000114689.2_98849582_98854188_1	chr13	-	711	3	NNC	ENSMUSG00000114689.2	novel	570	2	NA	NA	-1170	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	24.5	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCTCCATCTTTGAACA	NA	False	NA	-6	True	ATTAAA	-23	NA	98854188	98849581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_98850076_98852942_98853093_98854121
ENSMUSG00000114689.2_98849582_98854188_2	chr13	-	718	3	NNC	ENSMUSG00000114689.2	novel	570	2	NA	NA	-1170	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	35.5	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCTCCATCTTTGAACA	NA	False	NA	-6	True	ATTAAA	-23	NA	98854188	98849581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_98850076_98852942_98853093_98854114
ENSMUSG00000114719.2_98953260_99041229_1	chr13	+	942	3	Fusion	ENSMUSG00000114719.2_ENSMUSG00000062461.8	novel	400	2	NA	NA	0	51	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14431	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAGGAAGA	NA	False	NA	NA	False	ATTAAA	-28	NA	98953259	99041229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr13_+_98953481_98953593_98953783_99040697
ENSMUSG00000114777.2_66667717_66674703_1	chr13	+	565	3	NNC	ENSMUSG00000114777.2	novel	1568	3	NA	NA	-6326	-2705	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	19.5	485	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGTATAGTCTCATAATA	NA	False	NA	NA	False	NA	NA	NA	66667716	66674703	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_66667826_66674049_66674177_66674374
ENSMUSG00000114777.2_66667717_66675367_1	chr13	+	1229	3	NNC	ENSMUSG00000114777.2	novel	1568	3	NA	NA	-6326	-2041	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	19.5	767	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAGGTTGTTTTATATA	NA	False	NA	NA	False	NA	NA	NA	66667716	66675367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_+_66667826_66674049_66674177_66674374
ENSMUSG00000114839.2_66887378_66892960_1	chr13	-	456	4	NNC	ENSMUSG00000114839.2	novel	1153	3	NA	NA	-3583	-943	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	79.79974937304	810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAAACCCTATGAATGTA	NA	False	NA	NA	False	NA	NA	NA	66892960	66887377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66887399_66888839_66889043_66889243_66889330_66892814
ENSMUSG00000114839.2_66888695_66892960_1	chr13	-	580	3	NNC	ENSMUSG00000114839.2	novel	1153	3	NA	NA	-3583	-2260	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_2	78	1099	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	66892960	66888694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66889043_66889243_66889330_66892814
ENSMUSG00000114839.2_66888695_66901047_1	chr13	-	582	3	NNC	ENSMUSG00000114839.2	novel	1153	3	NA	NA	-11670	-2260	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	69.5	808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	4299	False	NA	NA	False	NA	NA	NA	66901047	66888694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66889043_66889243_66889330_66900899
ENSMUSG00000114929.2_58381160_58391662_1	chr13	+	573	5	Genic_Genomic	ENSMUSG00000114929.2	novel	474	2	NA	NA	1203	7098	multi-exon	FALSE	non_canonical	0	0	junction_1	0	181	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTGTTCTCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	58381159	58391662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_58381473_58384330_58384409_58384800_58384872_58386462_58386527_58391615
ENSMUSG00000114929.2_58381160_58421927_1	chr13	+	1448	12	Genic_Genomic	ENSMUSG00000114929.2	novel	474	2	NA	NA	1203	37363	multi-exon	FALSE	non_canonical	0	0	junction_1	0	472	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCTCCCGCGCTACCCCC	NA	False	NA	NA	False	NA	NA	NA	58381159	58421927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr13_+_58381473_58384330_58384409_58384800_58384872_58386462_58386527_58389467_58389570_58391615_58391769_58398944_58398968_58403560_58403685_58407247_58407326_58411011_58411156_58411755_58412014_58421887
ENSMUSG00000115003.2_47013127_47025791_1	chr14	+	1349	5	Genic_Genomic	ENSMUSG00000115003.2	novel	898	1	NA	NA	-11963	-196	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4731	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACTTCCCCCGGCCTCA	NA	False	NA	NA	False	NA	NA	NA	47013126	47025791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr14_+_47014007_47016345_47016481_47017569_47017683_47021568_47021638_47025639
ENSMUSG00000115003.2_47013127_47025791_2	chr14	+	1358	5	Genic_Genomic	ENSMUSG00000115003.2	novel	898	1	NA	NA	-11963	-196	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5002	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACTTCCCCCGGCCTCA	NA	False	NA	NA	False	NA	NA	NA	47013126	47025791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr14_+_47014007_47016345_47016490_47017569_47017683_47021568_47021638_47025639
ENSMUSG00000115003.2_47013744_47025791_1	chr14	+	741	5	Genic_Genomic	ENSMUSG00000115003.2	novel	898	1	NA	NA	-11346	-196	multi-exon	FALSE	non_canonical	0	0	junction_1	0	286	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACTTCCCCCGGCCTCA	NA	False	NA	NA	False	NA	NA	NA	47013743	47025791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr14_+_47014007_47016345_47016490_47017569_47017683_47021568_47021638_47025639
ENSMUSG00000115092.2_76753426_76768193_1	chr14	+	663	4	NNC	ENSMUSG00000115092.2	novel	415	3	NA	NA	-10606	7	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_3	5.09901951359278	515	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGCCACCCTCCTGTTCAC	NA	False	NA	13	True	AATAAA	-29	NA	76753425	76768193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_76753538_76764032_76764202_76766569_76766669_76767910
ENSMUSG00000115092.2_76753426_76768193_2	chr14	+	640	4	NNC	ENSMUSG00000115092.2	novel	415	3	NA	NA	-10606	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	8.60232526704263	445	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGCCACCCTCCTGTTCAC	NA	False	NA	13	True	AATAAA	-29	NA	76753425	76768193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_76753538_76764032_76764202_76766572_76766669_76767930
ENSMUSG00000115138.2_27459921_27463040_1	chr15	-	668	4	NNC	ENSMUSG00000115138.2	novel	1237	5	NA	NA	495	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.816496580927726	480	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGACTTTGACTTGGCTCC	NA	False	NA	NA	False	NA	NA	NA	27463040	27459920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_27460254_27461343_27461420_27461806_27461958_27462932
ENSMUSG00000115219.3_20430343_20437619_1	chr16	+	987	3	NNC	ENSMUSG00000115219.3	novel	1134	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	133	1812	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCTGGCTTCTAGGATT	5899	False	NA	20	True	AATACA	-30	NA	20430342	20437619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_20430571_20436375_20436655_20437139
ENSMUSG00000115219.3_20430343_20437619_2	chr16	+	992	3	FSM	ENSMUSG00000115219.3	ENSMUST00000115522.10	1134	3	0	142	0	0	multi-exon	FALSE	canonical	3	220	junction_2	23	1856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCTGGCTTCTAGGATT	5899	False	NA	20	True	AATACA	-30	NA	20430342	20437619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_20430571_20436375_20436660_20437139
ENSMUSG00000115249.2_37929258_37961173_1	chr15	+	965	8	Genic_Genomic	ENSMUSG00000115249.2	novel	5748	1	NA	NA	-31457	-5289	multi-exon	FALSE	non_canonical	0	0	junction_1	0	95	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCGCGGCCGACCAAATCC	NA	False	NA	NA	False	NA	NA	NA	37929257	37961173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_+_37929396_37931845_37931951_37937459_37937594_37944741_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
ENSMUSG00000115249.2_37929258_37961347_1	chr15	+	1139	8	Genic_Genomic	ENSMUSG00000115249.2	novel	5748	1	NA	NA	-31457	-5115	multi-exon	FALSE	non_canonical	0	0	junction_1	0	142	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGCCCCGCCCCACTGCC	NA	False	NA	NA	False	NA	NA	NA	37929257	37961347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_+_37929396_37931845_37931951_37937459_37937594_37944741_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
ENSMUSG00000115326.2_37899075_37899965_1	chr15	-	457	2	ISM	ENSMUSG00000115326.2	ENSMUST00000226812.2	2265	6	-5	5836	-5	-5836	5prime_fragment	FALSE	canonical	1	2	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGAGGGCTC	NA	False	NA	NA	False	NA	NA	NA	37899965	37899074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr15_-_37899443_37899876
ENSMUSG00000115338.3_51181963_51189469_1	chr14	+	1338	6	FSM	ENSMUSG00000115338.3	ENSMUST00000048615.13	2942	6	204	1400	0	1118	multi-exon	FALSE	canonical	3	117	junction_1	38.2015706483385	1380	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTGTGTGGTTCGGTA	9234	False	NA	5	True	AATAAA	-17	NA	51181962	51189469	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_51182051_51185308_51185479_51187714_51187819_51187999_51188176_51188288_51188480_51188860
ENSMUSG00000115367.2_40026003_40031472_1	chr15	+	578	3	NNC	ENSMUSG00000115367.2	novel	1064	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	1	145	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTTCTGCCGTCACCTG	NA	False	NA	NA	False	AATAAA	-18	NA	40026002	40031472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_40026222_40028595_40028677_40031194
ENSMUSG00000115391.2_45789295_45790032_1	chr14	-	494	2	NNC	ENSMUSG00000115391.2	novel	1035	2	NA	NA	1827	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTATTTTTTATAATTCC	NA	False	NA	NA	False	ATTAAA	-33	NA	45790032	45789294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_-_45789705_45789948
ENSMUSG00000115423.3_136723191_136733087_1	chr2	-	722	3	FSM	ENSMUSG00000115423.3	ENSMUST00000227806.2	944	3	222	0	222	0	multi-exon	FALSE	canonical	3	323	junction_1	8.5	1526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGCTGCCTTCACAAGT	NA	False	NA	NA	False	AATAAA	-21	NA	136733087	136723190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_136723560_136727392_136727621_136732962
ENSMUSG00000115423.3_136723191_136733315_1	chr2	-	714	3	ISM	ENSMUSG00000027274.17	ENSMUST00000028730.13	2935	6	-13	7491	-6	-52	5prime_fragment	FALSE	canonical	3	17	junction_2	153	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGCTGCCTTCACAAGT	NA	False	NA	NA	False	AATAAA	-21	NA	136733315	136723190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_136723560_136727392_136727621_136733198
ENSMUSG00000115423.3_136723328_136733087_1	chr2	-	585	3	FSM	ENSMUSG00000115423.3	ENSMUST00000227806.2	944	3	222	137	222	-137	multi-exon	FALSE	canonical	3	323	junction_1	8.5	551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCTATGCTGGTTATTG	NA	False	NA	-16	True	AATAAA	-27	NA	136733087	136723327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_136723560_136727392_136727621_136732962
ENSMUSG00000115423.3_136723328_136733315_1	chr2	-	577	3	ISM	ENSMUSG00000027274.17	ENSMUST00000028730.13	2935	6	-13	7628	-6	-189	5prime_fragment	FALSE	canonical	3	17	junction_2	153	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCTATGCTGGTTATTG	NA	False	NA	-16	True	AATAAA	-27	NA	136733315	136723327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr2_-_136723560_136727392_136727621_136733198
ENSMUSG00000115483.2_43129177_43269385_1	chr14	+	616	3	NNC	ENSMUSG00000115483.2	novel	1188	2	NA	NA	-3316	105917	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	15	1055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAAGTGAAGGCTCTTA	NA	False	NA	NA	False	ATTAAA	-28	NA	43129176	43269385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_43129304_43132676_43132821_43269040
ENSMUSG00000115483.2_43129178_43146869_1	chr14	+	924	3	NNC	ENSMUSG00000115483.2	novel	1188	2	NA	NA	-3315	-206	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	13	860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAAGTGAAGGCTCTTA	NA	False	NA	NA	False	ATTAAA	-28	NA	43129177	43146869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_43129304_43132676_43132821_43146215
ENSMUSG00000115483.2_43129178_43146869_2	chr14	+	646	3	NNC	ENSMUSG00000115483.2	novel	1188	2	NA	NA	-3315	-206	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	7.5	1029	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAAGTGAAGGCTCTTA	NA	False	NA	NA	False	ATTAAA	-28	NA	43129177	43146869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_43129304_43132645_43132821_43146524
ENSMUSG00000115483.2_43129178_43163125_2	chr14	+	1673	5	NNC	ENSMUSG00000115483.2	novel	1591	4	NA	NA	-3315	-336	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	21.2779228309532	1582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	43129177	43163125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_43129304_43132375_43132821_43157302_43157435_43158114_43158297_43162337
ENSMUSG00000115483.2_43129178_43163125_3	chr14	+	1350	5	NNC	ENSMUSG00000115483.2	novel	1591	4	NA	NA	-3315	-336	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	24.3874967965144	816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	43129177	43163125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_43129282_43132676_43132821_43157302_43157435_43158114_43158297_43162337
ENSMUSG00000115483.2_43129178_43163125_4	chr14	+	1372	5	NNC	ENSMUSG00000115483.2	novel	1591	4	NA	NA	-3315	-336	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	16.5283846760656	816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	43129177	43163125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_43129304_43132676_43132821_43157302_43157435_43158114_43158297_43162337
ENSMUSG00000115483.2_43132493_43163125_1	chr14	+	1430	4	FSM	ENSMUSG00000115483.2	ENSMUST00000228505.2	1591	4	-182	343	0	-336	multi-exon	FALSE	canonical	3	45	junction_2	11.5854314646552	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	43132492	43163125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_43132821_43157302_43157435_43158114_43158297_43162337
ENSMUSG00000115483.2_43132493_43163125_2	chr14	+	1248	3	NIC	ENSMUSG00000115483.2	novel	1591	4	NA	NA	0	-336	combination_of_known_splicesites	FALSE	canonical	3	14	junction_2	29.5	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	43132492	43163125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_43132821_43157302_43157435_43162337
ENSMUSG00000115483.2_43132493_43163461_2	chr14	+	1766	4	FSM	ENSMUSG00000115483.2	ENSMUST00000228505.2	1591	4	-182	7	0	0	multi-exon	FALSE	canonical	3	45	junction_2	11.5854314646552	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAATTTAAAAGCTCTA	NA	False	NA	NA	False	AATAAA	-11	NA	43132492	43163461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_43132821_43157302_43157435_43158114_43158297_43162337
ENSMUSG00000115546.2_38488482_38519510_1	chr15	+	4060	12	Genic_Genomic	ENSMUSG00000115546.2	novel	1266	1	NA	NA	-30548	-785	multi-exon	FALSE	non_canonical	0	0	junction_1	0	447	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCGGTGCCAGAGACGCC	NA	False	NA	NA	False	NA	NA	NA	38488481	38519510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_+_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
ENSMUSG00000115546.2_38490038_38519510_1	chr15	+	2504	12	Genic_Genomic	ENSMUSG00000115546.2	novel	1266	1	NA	NA	-28992	-785	multi-exon	FALSE	non_canonical	0	0	junction_1	0	106	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCGGTGCCAGAGACGCC	NA	False	NA	NA	False	NA	NA	NA	38490037	38519510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_+_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
ENSMUSG00000115627.2_61233985_61275436_1	chr14	+	676	5	NIC	ENSMUSG00000115627.2	novel	880	4	NA	NA	-41424	-38790	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCAGCTGGAACCCGCCC	NA	False	NA	NA	False	NA	NA	NA	61233984	61275436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr14_+_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61275298
ENSMUSG00000115685.2_34440651_34443337_1	chr15	+	455	5	Genic_Genomic	ENSMUSG00000115685.2	novel	1833	1	NA	NA	-2475	-1621	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14336	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGCCAAGATGGCCGGGG	6460	False	NA	NA	False	NA	NA	NA	34440650	34443337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_+_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443312
ENSMUSG00000115685.2_34440651_34443405_1	chr15	+	505	5	Genic_Genomic	ENSMUSG00000115685.2	novel	1833	1	NA	NA	-2475	-1553	multi-exon	FALSE	non_canonical	0	0	junction_1	0	102805	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGATTGTGGGACCGGAA	6460	False	NA	NA	False	NA	NA	NA	34440650	34443405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_+_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443330
ENSMUSG00000115685.2_34440651_34443686_1	chr15	+	786	5	Genic_Genomic	ENSMUSG00000115685.2	novel	1833	1	NA	NA	-2475	-1272	multi-exon	FALSE	non_canonical	0	0	junction_1	0	104170	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGTTGTCTTGGGCGTGCT	6460	False	NA	NA	False	NA	NA	NA	34440650	34443686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_+_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443330
ENSMUSG00000115813.2_32025619_32029251_1	chr14	+	1839	2	NNC	ENSMUSG00000115813.2	novel	744	2	NA	NA	-1440	-382	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	303	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGTGGGAGGGAAGATGC	NA	False	NA	NA	False	NA	NA	NA	32025618	32029251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr14_+_32027353_32029146
ENSMUSG00000115923.2_16130110_16176815_1	chr16	+	4038	20	Genic_Genomic	ENSMUSG00000115923.2	novel	600	2	NA	NA	-36957	-60	multi-exon	TRUE	non_canonical	0	0	junction_1	0	496	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGCCCTTTCCTCGGGAGC	NA	False	NA	NA	False	AATGAA	-40	NA	16130109	16176815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000115923.2_16131247_16176815_1	chr16	+	2901	20	Genic_Genomic	ENSMUSG00000115923.2	novel	600	2	NA	NA	-35820	-60	multi-exon	FALSE	non_canonical	0	0	junction_1	0	286	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGCCCTTTCCTCGGGAGC	NA	False	NA	NA	False	AATGAA	-40	NA	16131246	16176815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000115923.2_16131698_16176815_1	chr16	+	2450	20	Genic_Genomic	ENSMUSG00000115923.2	novel	600	2	NA	NA	-35369	-60	multi-exon	FALSE	non_canonical	0	0	junction_1	0	111	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGCCCTTTCCTCGGGAGC	NA	False	NA	NA	False	AATGAA	-40	NA	16131697	16176815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000115923.2_16147551_16176828_1	chr16	+	1294	9	Genic_Genomic	ENSMUSG00000115923.2	novel	600	2	NA	NA	-19516	-47	multi-exon	FALSE	non_canonical	0	0	junction_1	0	130	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGAGCCCGCACCCATTGG	NA	False	NA	NA	False	NA	NA	NA	16147550	16176828	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUSG00000115958.2_133251704_133257460_1	chr1	+	581	3	NIC	ENSMUSG00000115958.2	novel	656	3	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	18	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	5608	False	NA	4	True	AATAAA	-16	NA	133251703	133257460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_133251787_133254947_133255079_133257093
ENSMUSG00000115958.2_133254059_133257460_1	chr1	+	660	3	NNC	ENSMUSG00000116158.2	novel	496	2	NA	NA	-891	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	23	236	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	7963	False	NA	4	True	AATAAA	-16	NA	133254058	133257460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr1_+_133254146_133254872_133255079_133257093
ENSMUSG00000115976.2_80861980_80896272_1	chr15	-	2764	22	Genic_Genomic	ENSMUSG00000115976.2	novel	544	2	NA	NA	-5661	27628	multi-exon	FALSE	non_canonical	0	0	junction_1	0	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGCCGCAGAGCCGGTGGC	623	False	NA	NA	False	NA	NA	NA	80896272	80861979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_-_80862067_80886769_80886866_80887560_80887647_80888004_80888072_80890607_80890814_80890906_80891015_80891647_80891792_80892051_80892248_80892489_80892636_80892884_80893110_80893424_80893480_80893607_80893736_80893834_80893991_80894141_80894197_80894429_80894480_80894610_80894764_80894917_80894989_80895061_80895111_80895186_80895273_80895438_80895562_80895662_80895724_80895856
ENSMUSG00000115987.2_76506309_76510274_1	chr15	-	888	9	NNC	ENSMUSG00000115987.2	novel	911	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	341.849382038347	4183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9603	False	NA	-25	True	AATAAA	-17	NA	76510274	76506308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76509327_76509406_76510188
ENSMUSG00000115987.2_76506309_76510274_2	chr15	-	906	10	NNC	ENSMUSG00000115987.2	novel	911	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	324.627231615237	4358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9603	False	NA	-25	True	AATAAA	-17	NA	76510274	76506308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508677_76508787_76508821_76509333_76509406_76510188
ENSMUSG00000115987.2_76506309_76510274_3	chr15	-	882	9	NIC	ENSMUSG00000115987.2	novel	911	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_7	331.20912483656	3537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9603	False	NA	-25	True	AATAAA	-17	NA	76510274	76506308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76509333_76509406_76510188
ENSMUSG00000116048.2_93406743_93429584_1	chr1	+	1118	9	ISM	ENSMUSG00000116048.2	ENSMUST00000179353.8	3219	13	28	7871	28	-7871	5prime_fragment	FALSE	canonical	3	41	junction_1	321.357059009134	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTCCCCTCTTGAATCG	NA	False	NA	NA	False	AATAAA	-16	NA	93406742	93429584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr1_+_93406791_93416849_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228
ENSMUSG00000116123.2_8970751_8980201_1	chr16	+	665	2	NNC	ENSMUSG00000116123.2	novel	664	2	NA	NA	-5883	3	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	0	441	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGACTTCCCATTCCAACT	NA	False	NA	18	True	AATAAA	-19	NA	8970750	8980201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_8970862_8979647
ENSMUSG00000116223.2_98829306_98832319_1	chr15	+	1610	4	NNC	ENSMUSG00000116223.2	novel	1345	2	NA	NA	-2900	-5024	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	26725	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCGCCCGCTCCGAGCC	NA	False	NA	NA	False	NA	NA	NA	98829305	98832319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_+_98830444_98830572_98830722_98830853_98831071_98832213
ENSMUSG00000116223.2_98829306_98832319_2	chr15	+	1616	4	NIC	ENSMUSG00000116223.2	novel	1345	2	NA	NA	-2900	-5024	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	64816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCGCCCGCTCCGAGCC	NA	False	NA	NA	False	NA	NA	NA	98829305	98832319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_+_98830444_98830572_98830722_98830853_98831077_98832213
ENSMUSG00000116295.2_97058669_97065124_1	chr15	-	911	4	FSM	ENSMUSG00000116295.2	ENSMUST00000229999.2	510	4	0	-401	0	145	multi-exon	FALSE	canonical	3	275	junction_3	214.206027511418	5210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	97065124	97058668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_97059277_97059835_97059964_97064383_97064492_97065057
ENSMUSG00000116295.2_97058669_97065124_2	chr15	-	927	4	NIC	ENSMUSG00000116295.2	novel	510	4	NA	NA	0	145	combination_of_known_junctions	FALSE	canonical	3	708	junction_3	16.5797734872612	5804	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	97065124	97058668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_97059277_97059835_97059964_97064383_97064508_97065057
ENSMUSG00000116295.2_97058669_97065124_3	chr15	-	783	3	NIC	ENSMUSG00000116295.2	novel	510	4	NA	NA	0	145	combination_of_known_junctions	FALSE	canonical	3	219	junction_1	28	2296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	97065124	97058668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_97059277_97064383_97064492_97065057
ENSMUSG00000116295.2_97058814_97065124_2	chr15	-	638	3	NIC	ENSMUSG00000116295.2	novel	510	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	219	junction_1	28	1026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCTGATCATACCATAGC	NA	False	NA	-10	True	AATAAA	-17	NA	97065124	97058813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_97059277_97064383_97064492_97065057
ENSMUSG00000116295.2_97058814_97065124_3	chr15	-	782	4	NIC	ENSMUSG00000116295.2	novel	510	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	708	junction_3	16.5797734872612	3184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCTGATCATACCATAGC	NA	False	NA	-10	True	AATAAA	-17	NA	97065124	97058813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr15_-_97059277_97059835_97059964_97064383_97064508_97065057
ENSMUSG00000116396.2_84604284_84656405_1	chr15	-	1490	12	NNC	ENSMUSG00000116396.2	novel	1237	3	NA	NA	-51938	-5454	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGGCCCGTCCCCGGACA	NA	False	NA	NA	False	NA	NA	NA	84656405	84604283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr15_-_84604314_84617096_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
ENSMUSG00000116469.2_8951046_8955046_1	chr16	+	498	3	NNC	ENSMUSG00000116469.2	novel	673	3	NA	NA	53037	-262	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	3.5	96	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTTTTCCTTATGGTTCG	6146	False	NA	NA	False	CATAAA	-14	NA	8951045	8955046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_8951217_8953545_8953645_8954818
ENSMUSG00000116469.2_8951046_8955672_1	chr16	+	1124	3	NNC	ENSMUSG00000116469.2	novel	673	3	NA	NA	53037	364	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	3.5	224	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGGATTCCTGTGTA	6146	False	NA	NA	False	AATAAA	-15	NA	8951045	8955672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_8951217_8953545_8953645_8954818
ENSMUSG00000116469.2_8951165_8955672_1	chr16	+	1005	3	NNC	ENSMUSG00000116469.2	novel	673	3	NA	NA	53156	364	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	3.5	113	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGGATTCCTGTGTA	6265	False	NA	NA	False	AATAAA	-15	NA	8951164	8955672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_8951217_8953545_8953645_8954818
ENSMUSG00000116469.2_8951165_8980201_1	chr16	+	705	3	Fusion	ENSMUSG00000116469.2_ENSMUSG00000116123.2	novel	673	3	NA	NA	-25469	3	multi-exon	FALSE	canonical	0	0	junction_2	18.5	90	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGACTTCCCATTCCAACT	6265	False	NA	18	True	AATAAA	-19	NA	8951164	8980201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr16_+_8951217_8953545_8953645_8979647
ENSMUSG00000116505.2_78867277_78890067_1	chr15	-	2537	14	Genic_Genomic	ENSMUSG00000116505.2	novel	712	3	NA	NA	5174	11878	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCCATCCGCCCATAAAAC	9623	False	NA	NA	False	NA	NA	NA	78890067	78867276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr15_-_78867409_78872091_78872149_78875016_78875086_78875184_78875275_78875528_78875639_78877103_78877633_78878241_78878353_78883996_78884145_78885720_78885824_78886247_78886408_78886484_78886599_78887905_78887993_78888644_78888806_78889401
ENSMUSG00000116564.2_17594834_17614230_1	chr17	+	2036	10	NNC	ENSMUSG00000116564.2	novel	3220	10	NA	NA	0	-931	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	136.490943940533	722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAATCTGTAGTTCTCTCT	NA	False	NA	8	True	AATAAA	-17	NA	17594833	17614230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613706
ENSMUSG00000116564.2_17594834_17614230_2	chr17	+	2119	11	NNC	ENSMUSG00000116564.2	novel	3220	10	NA	NA	0	-931	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	168.48445032109	240	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAATCTGTAGTTCTCTCT	NA	False	NA	8	True	AATAAA	-17	NA	17594833	17614230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_17594933_17597007_17597101_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613716
ENSMUSG00000116564.2_17594834_17614230_6	chr17	+	2021	10	NNC	ENSMUSG00000116564.2	novel	3220	10	NA	NA	0	-931	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	136.524135251511	464	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAATCTGTAGTTCTCTCT	NA	False	NA	8	True	AATAAA	-17	NA	17594833	17614230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_17594933_17597980_17598120_17598744_17598857_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613716
ENSMUSG00000116627.2_21053866_21071251_1	chr12	+	383	4	NNC	ENSMUSG00000116627.2	novel	1230	4	NA	NA	13329	-19178	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	35.4400902933387	442	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	21053865	21071251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_+_21053965_21062987_21063115_21063316_21063378_21071155
ENSMUSG00000116673.2_97867676_97883192_1	chr16	-	481	4	ISM	ENSMUSG00000116673.2	ENSMUST00000232614.2	497	5	18	14346	0	-1032	5prime_fragment	FALSE	canonical	3	34	junction_3	16.6599986661331	692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAAATGCAATCAATGTGG	NA	False	NA	NA	False	NA	NA	NA	97883192	97867675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr16_-_97867866_97868954_97869016_97869203_97869331_97883089
ENSMUSG00000116771.2_21643495_21655420_1	chr17	-	2100	5	NIC	ENSMUSG00000116771.2	novel	1156	4	NA	NA	15109	-584	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTCCACACCCATATACT	NA	False	NA	NA	False	NA	NA	NA	21655420	21643494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_-_21643580_21647593_21647634_21647998_21648091_21650456_21650584_21653664
ENSMUSG00000116831.2_22677908_22713143_1	chr16	-	466	3	NNC	ENSMUSG00000116831.2	novel	1769	4	NA	NA	-7	15825	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	5	117	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATGCTAAGCAGTGAGTT	NA	False	NA	NA	False	TTTAAA	-2	NA	22713143	22677907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_22678205_22705778_22705854_22713049
ENSMUSG00000116831.2_22713008_22718193_1	chr16	-	1175	5	NIC	ENSMUSG00000116831.2	novel	1769	4	NA	NA	-5057	-19275	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	139	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTGAACACTAGCCCTGT	NA	False	NA	NA	False	NA	NA	NA	22718193	22713007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_22713186_22713943_22714108_22715257_22715360_22716877_22716962_22717546
ENSMUSG00000116836.2_90722697_90731714_1	chr16	+	1135	7	Genic_Genomic	ENSMUSG00000116836.2	novel	2579	1	NA	NA	277	6716	multi-exon	FALSE	non_canonical	0	0	junction_1	0	683	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAGGAACCGTGGAACGC	NA	False	NA	NA	False	NA	NA	NA	90722696	90731714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_90722971_90723232_90723329_90723985_90724118_90724237_90724397_90726810_90726872_90727881_90728050_90731469
ENSMUSG00000116836.2_90722697_90731714_2	chr16	+	1133	7	Genic_Genomic	ENSMUSG00000116836.2	novel	2579	1	NA	NA	277	6716	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1149	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAGGAACCGTGGAACGC	NA	False	NA	NA	False	NA	NA	NA	90722696	90731714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_90722971_90723232_90723320_90723985_90724118_90724237_90724397_90726803_90726872_90727881_90728050_90731469
ENSMUSG00000116836.2_90722697_90731714_3	chr16	+	1132	7	Genic_Genomic	ENSMUSG00000116836.2	novel	2579	1	NA	NA	277	6716	multi-exon	FALSE	non_canonical	0	0	junction_1	0	871	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAGGAACCGTGGAACGC	NA	False	NA	NA	False	NA	NA	NA	90722696	90731714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_90722961_90723232_90723329_90723985_90724118_90724237_90724397_90726803_90726872_90727881_90728050_90731469
ENSMUSG00000116836.2_90722697_90731714_4	chr16	+	1135	7	Genic_Genomic	ENSMUSG00000116836.2	novel	2579	1	NA	NA	277	6716	multi-exon	FALSE	non_canonical	0	0	junction_1	0	944	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAGGAACCGTGGAACGC	NA	False	NA	NA	False	NA	NA	NA	90722696	90731714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_90722971_90723232_90723329_90723985_90724118_90724237_90724390_90726803_90726872_90727881_90728050_90731469
ENSMUSG00000116840.2_34842798_34926895_1	chr16	-	946	7	NIC	ENSMUSG00000116840.2	novel	544	5	NA	NA	-83320	-18830	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	3592	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTACGAGGGGGCGGAGG	NA	False	NA	NA	False	NA	NA	NA	34926895	34842797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_34843006_34846194_34846313_34869089_34869109_34895975_34896065_34920125_34920248_34922315_34922495_34926684
ENSMUSG00000116840.2_34842798_34926948_1	chr16	-	998	6	NNC	ENSMUSG00000116840.2	novel	544	5	NA	NA	-83373	-18830	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4730	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTACGAGGGGGCGGAGG	NA	False	NA	NA	False	NA	NA	NA	34926948	34842797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_34843006_34846194_34846313_34895957_34896065_34920125_34920248_34922315_34922495_34926684
ENSMUSG00000116840.2_34842798_34926948_2	chr16	-	991	6	NNC	ENSMUSG00000116840.2	novel	544	5	NA	NA	-83373	-18830	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7345	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTACGAGGGGGCGGAGG	NA	False	NA	NA	False	NA	NA	NA	34926948	34842797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_34843006_34846194_34846313_34895964_34896065_34920125_34920248_34922315_34922495_34926684
ENSMUSG00000116840.2_34842798_34926948_3	chr16	-	999	7	NIC	ENSMUSG00000116840.2	novel	544	5	NA	NA	-83373	-18830	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	16582	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTACGAGGGGGCGGAGG	NA	False	NA	NA	False	NA	NA	NA	34926948	34842797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_-_34843006_34846194_34846313_34869089_34869109_34895975_34896065_34920125_34920248_34922315_34922495_34926684
ENSMUSG00000116875.2_24348144_24349277_2	chr16	+	1032	2	Genic_Genomic	ENSMUSG00000116875.2	novel	969	1	NA	NA	0	165	multi-exon	FALSE	non_canonical	1	5	junction_1	0	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTTTTCTTCCTTTTTTC	NA	False	NA	NA	False	AATAAA	-14	NA	24348143	24349277	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_24348582_24348683
ENSMUSG00000116875.2_24348144_24349277_3	chr16	+	1019	2	Genic_Genomic	ENSMUSG00000116875.2	novel	969	1	NA	NA	0	165	multi-exon	FALSE	non_canonical	1	15	junction_1	0	696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTTTTCTTCCTTTTTTC	NA	False	NA	NA	False	AATAAA	-14	NA	24348143	24349277	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_24348184_24348298
ENSMUSG00000116875.2_24348144_24349784_2	chr16	+	1526	2	Genic_Genomic	ENSMUSG00000116875.2	novel	969	1	NA	NA	0	672	multi-exon	FALSE	non_canonical	1	15	junction_1	0	4346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTACCAACTAGCTAATAAA	NA	False	NA	NA	False	AATAAA	-40	NA	24348143	24349784	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_24348184_24348298
ENSMUSG00000116875.2_24348144_24349784_3	chr16	+	1539	2	Genic_Genomic	ENSMUSG00000116875.2	novel	969	1	NA	NA	0	672	multi-exon	FALSE	non_canonical	1	5	junction_1	0	1734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTACCAACTAGCTAATAAA	NA	False	NA	NA	False	AATAAA	-40	NA	24348143	24349784	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr16_+_24348582_24348683
ENSMUSG00000116884.2_27782743_27784682_1	chr17	+	613	4	Genic_Genomic	ENSMUSG00000116884.2	novel	1109	1	NA	NA	-1343	-512	multi-exon	FALSE	non_canonical	0	0	junction_1	0	257	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGAGTCCTCCAGCGCGT	NA	False	NA	NA	False	NA	NA	NA	27782742	27784682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_+_27782991_27783122_27783229_27783514_27783725_27784633
ENSMUSG00000116884.2_27782743_27784682_3	chr17	+	592	4	Genic_Genomic	ENSMUSG00000116884.2	novel	1109	1	NA	NA	-1343	-512	multi-exon	FALSE	non_canonical	0	0	junction_1	0	115	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGAGTCCTCCAGCGCGT	NA	False	NA	NA	False	NA	NA	NA	27782742	27784682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_+_27782991_27783122_27783229_27783535_27783725_27784633
ENSMUSG00000116894.2_59433691_59459754_1	chr16	+	1541	8	NIC	ENSMUSG00000116894.2	novel	599	4	NA	NA	-23617	-33602	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	656	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGAGGCGCGCGCACAG	NA	False	NA	NA	False	NA	NA	NA	59433690	59459754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_59434208_59439157_59439214_59441581_59441712_59443383_59443479_59444240_59444310_59444642_59444705_59452673_59452824_59459292
ENSMUSG00000116895.2_15230438_15236897_1	chr17	+	1044	6	ISM	ENSMUSG00000116895.2	ENSMUST00000097395.5	1684	12	0	5814	0	-5814	5prime_fragment	FALSE	canonical	3	116	junction_1	50.8173198821032	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATAGAATTTGCTG	NA	False	NA	NA	False	NA	NA	NA	15230437	15236897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr17_+_15230534_15231134_15231304_15231891_15232032_15233209_15233312_15233933_15234024_15236450
ENSMUSG00000116895.2_15230438_15242495_1	chr17	+	1468	12	FSM	ENSMUSG00000116895.2	ENSMUST00000097395.5	1684	12	0	216	0	-216	multi-exon	FALSE	canonical	0	0	junction_7	68.2306491805794	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGGGTTCTGAAGCTGAA	NA	False	NA	NA	False	AATATA	-23	NA	15230437	15242495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_15230534_15231134_15231304_15231891_15232032_15233209_15233312_15233933_15234024_15236450_15236549_15237402_15237540_15238346_15238462_15239227_15239331_15239703_15239734_15240527_15240597_15242176
ENSMUSG00000116947.2_93811682_93815011_1	chr16	+	806	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-618	1916	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	104	176	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2246	False	NA	17	True	NA	NA	NA	93811681	93815011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_93811971_93812291_93812370_93814572
ENSMUSG00000116947.2_93811735_93815011_1	chr16	+	1045	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-565	1916	at_least_one_novel_splicesite	FALSE	canonical	3	174	junction_3	36.1693547388148	1463	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2299	False	NA	17	True	NA	NA	NA	93811734	93815011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_93811971_93812291_93812370_93812713_93813006_93814572
ENSMUSG00000116947.2_93811735_93815011_2	chr16	+	1366	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-565	1916	at_least_one_novel_splicesite	FALSE	canonical	3	174	junction_2	43.5	889	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2299	False	NA	17	True	NA	NA	NA	93811734	93815011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_93812370_93812713_93813006_93814572
ENSMUSG00000116947.2_93811735_93815011_3	chr16	+	1099	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-565	1916	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_3	113.520433794489	1408	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2299	False	NA	17	True	NA	NA	NA	93811734	93815011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_93811971_93812291_93812370_93812713_93813060_93814572
ENSMUSG00000116947.2_93811735_93815011_4	chr16	+	916	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-565	1916	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	116	355	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2299	False	NA	17	True	NA	NA	NA	93811734	93815011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_93811971_93812291_93812370_93814409
ENSMUSG00000116947.2_93811735_93815011_5	chr16	+	1038	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-565	1916	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	108.508064216444	1407	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2299	False	NA	17	True	NA	NA	NA	93811734	93815011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_93811971_93812298_93812370_93812713_93813006_93814572
ENSMUSG00000116947.2_93811735_93815011_6	chr16	+	967	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-565	1916	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_1	67.5	341	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2299	False	NA	17	True	NA	NA	NA	93811734	93815011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_93811971_93812713_93813006_93814572
ENSMUSG00000116947.2_93811826_93814169_1	chr16	+	1679	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-474	1074	at_least_one_novel_splicesite	FALSE	canonical	3	232	junction_1	14.5	197	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTGGAGCATGTGTCCT	2390	False	NA	NA	False	NA	NA	NA	93811825	93814169	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_93811971_93812291_93812370_93812713
ENSMUSG00000116947.2_93811826_93815011_1	chr16	+	662	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-474	1916	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	104	109	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2390	False	NA	17	True	NA	NA	NA	93811825	93815011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_93811971_93812291_93812370_93814572
ENSMUSG00000116947.2_93811826_93815011_2	chr16	+	832	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-474	1916	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	116	319	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2390	False	NA	17	True	NA	NA	NA	93811825	93815011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_93811971_93812291_93812370_93814402
ENSMUSG00000117072.2_13107616_13128833_1	chr17	+	1808	19	Genic_Genomic	ENSMUSG00000117072.2	novel	368	2	NA	NA	-8808	10241	multi-exon	TRUE	non_canonical	0	0	junction_1	0	452	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGCCCACGCGTTTCCG	NA	False	NA	NA	False	NA	NA	NA	13107615	13128833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_+_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113303_13114398_13114485_13116147_13116218_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125425_13127939_13128014_13128348_13128407_13128722
ENSMUSG00000117232.2_95565331_95568418_1	chr16	-	447	3	NNC	ENSMUSG00000117232.2	novel	629	5	NA	NA	78552	-7590	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	1794	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTTTGTCTTGGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	95568418	95565330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_-_95565561_95567173_95567219_95568246
ENSMUSG00000117255.2_29004406_29019414_1	chr17	-	577	2	Genic_Genomic	ENSMUSG00000117255.2	novel	2130	1	NA	NA	1183	14062	multi-exon	FALSE	non_canonical	0	0	junction_1	0	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTCTCTCCTCAAGGTT	NA	False	NA	NA	False	NA	NA	NA	29019414	29004405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_-_29004515_29018946
ENSMUSG00000117358.2_74826660_74834386_1	chr17	-	654	6	NNC	ENSMUSG00000117358.2	novel	1389	4	NA	NA	253	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	5.74804314527997	103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCATTGGTCTCAGTGTT	NA	False	NA	-5	True	AATAAA	-14	NA	74834386	74826659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_74826911_74828104_74828213_74828236_74828275_74828355_74828483_74830509_74830574_74834320
ENSMUSG00000117358.2_74826660_74834386_3	chr17	-	416	3	NNC	ENSMUSG00000117358.2	novel	327	3	NA	NA	253	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	41.5	849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCATTGGTCTCAGTGTT	NA	False	NA	-5	True	AATAAA	-14	NA	74834386	74826659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_74826911_74830509_74830574_74834285
ENSMUSG00000117358.2_74826660_74834386_4	chr17	-	486	4	NNC	ENSMUSG00000117358.2	novel	1389	4	NA	NA	253	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4.08248290463863	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCATTGGTCTCAGTGTT	NA	False	NA	-5	True	AATAAA	-14	NA	74834386	74826659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_74826911_74827487_74827593_74830509_74830574_74834320
ENSMUSG00000117358.2_74826660_74834386_5	chr17	-	381	3	NNC	ENSMUSG00000117358.2	novel	327	3	NA	NA	253	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	48.5	781	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCATTGGTCTCAGTGTT	NA	False	NA	-5	True	AATAAA	-14	NA	74834386	74826659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_74826911_74830509_74830574_74834320
ENSMUSG00000117358.2_74827898_74834386_1	chr17	-	610	5	NNC	ENSMUSG00000117358.2	novel	1389	4	NA	NA	253	-1230	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6.25999201277446	59	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTCTGTAGGTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	74834386	74827897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_74828213_74828236_74828275_74828355_74828483_74830509_74830574_74834320
ENSMUSG00000117431.2_84316038_84320842_1	chr17	+	647	2	NIC	ENSMUSG00000117431.2	novel	440	3	NA	NA	-285	5	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGATGGTTGCTCTGGAT	2193	False	NA	NA	False	ATTAAA	-20	NA	84316037	84320842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_84316398_84320555
ENSMUSG00000117468.2_33071179_33072010_1	chr17	-	767	2	Genic_Genomic	ENSMUSG00000117468.2	novel	816	1	NA	NA	-16	0	multi-exon	TRUE	canonical	0	0	junction_1	0	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCACCCGTGGTATTTT	NA	False	NA	NA	False	GATAAA	-26	NA	33072010	33071178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_-_33071900_33071964
ENSMUSG00000117477.2_24206794_24215105_1	chr7	-	943	3	Genic_Genomic	ENSMUSG00000117477.2	novel	1973	1	NA	NA	-3225	3114	multi-exon	FALSE	non_canonical	0	0	junction_1	0	542	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGGCTAGGCGAGCGGGC	NA	False	NA	NA	False	NA	NA	NA	24215105	24206793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_24206862_24209947_24210179_24214461
ENSMUSG00000117477.2_24206794_24215105_2	chr7	-	881	3	Genic_Genomic	ENSMUSG00000117477.2	novel	1973	1	NA	NA	-3225	3114	multi-exon	FALSE	non_canonical	0	0	junction_1	0	657	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGGCTAGGCGAGCGGGC	NA	False	NA	NA	False	NA	NA	NA	24215105	24206793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_24206862_24209970_24210179_24214500
ENSMUSG00000117477.2_24207187_24215105_1	chr7	-	928	3	Genic_Genomic	ENSMUSG00000117477.2	novel	1973	1	NA	NA	-3225	2721	multi-exon	FALSE	non_canonical	0	0	junction_1	0	419	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCACCAGGCACCCAAACG	NA	False	NA	NA	False	NA	NA	NA	24215105	24207186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr7_-_24207302_24209970_24210179_24214500
ENSMUSG00000117494.2_12888385_12996440_3	chr18	+	2484	14	Genic_Genomic	ENSMUSG00000117494.2	novel	2858	1	NA	NA	-107101	-1903	multi-exon	FALSE	non_canonical	0	0	junction_1	0	162	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTGTTTTAGAAGGCAGT	NA	False	NA	NA	False	GATAAA	-11	NA	12888384	12996440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr18_+_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996405
ENSMUSG00000117494.2_12889249_12996440_2	chr18	+	1620	14	Genic_Genomic	ENSMUSG00000117494.2	novel	2858	1	NA	NA	-106237	-1903	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTGTTTTAGAAGGCAGT	NA	False	NA	NA	False	GATAAA	-11	NA	12889248	12996440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr18_+_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996405
ENSMUSG00000117494.2_12889249_12996440_3	chr18	+	1897	14	Genic_Genomic	ENSMUSG00000117494.2	novel	2858	1	NA	NA	-106237	-1903	multi-exon	TRUE	non_canonical	0	0	junction_1	0	64	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTGTTTTAGAAGGCAGT	NA	False	NA	NA	False	GATAAA	-11	NA	12889248	12996440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr18_+_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996128
ENSMUSG00000117519.2_6214569_6241523_1	chr18	+	2273	16	NIC	ENSMUSG00000117519.2	novel	523	3	NA	NA	-26245	-26864	intron_retention	FALSE	non_canonical	0	0	junction_1	0	574	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCGGGCGGGAGGAACA	NA	False	NA	NA	False	NA	NA	NA	6214568	6241523	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_6214701_6216222_6216367_6216740_6216948_6220223_6220293_6220801_6220996_6222718_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
ENSMUSG00000117519.2_6222787_6241523_1	chr18	+	1459	11	NIC	ENSMUSG00000117519.2	novel	523	3	NA	NA	-18027	-26864	intron_retention	FALSE	non_canonical	0	0	junction_1	0	535	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCGGGCGGGAGGAACA	NA	False	NA	NA	False	NA	NA	NA	6222786	6241523	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
ENSMUSG00000117603.2_34157897_34159299_2	chr17	+	556	5	NIC	ENSMUSG00000117603.2	novel	151	2	NA	NA	-146	901	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1767	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCCGGAAGTAAACAAGG	242	False	NA	NA	False	NA	NA	NA	34157896	34159299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_34158086_34158512_34158638_34158721_34158793_34158997_34159140_34159270
ENSMUSG00000117603.2_34157897_34159299_3	chr17	+	678	4	NNC	ENSMUSG00000117603.2	novel	151	2	NA	NA	-146	901	intron_retention	FALSE	non_canonical	0	0	junction_1	0	11174	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCCGGAAGTAAACAAGG	242	False	NA	NA	False	NA	NA	NA	34157896	34159299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_+_34158086_34158512_34158638_34158730_34158793_34158997
ENSMUSG00000117603.2_34157897_34159299_4	chr17	+	496	5	NIC	ENSMUSG00000117603.2	novel	151	2	NA	NA	-146	901	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	674	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCCGGAAGTAAACAAGG	242	False	NA	NA	False	NA	NA	NA	34157896	34159299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr17_+_34158086_34158512_34158638_34158721_34158793_34158997_34159080_34159270
ENSMUSG00000117614.2_29469803_29483160_2	chr17	+	1302	4	Genic_Genomic	ENSMUSG00000117614.2	novel	1210	1	NA	NA	-13170	-1022	multi-exon	FALSE	non_canonical	0	0	junction_1	0	852	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGTTTTGGCGCGGAAG	1986	False	NA	NA	False	NA	NA	NA	29469802	29483160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_+_29470700_29471223_29471293_29480710_29480866_29482979
ENSMUSG00000117783.2_83377147_83386534_1	chr18	+	970	5	NNC	ENSMUSG00000117783.2	novel	937	6	NA	NA	3437	264	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	3.57071421427143	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTTCCTATATTTAATT	NA	False	NA	NA	False	ATTAAA	-18	NA	83377146	83386534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_+_83377264_83381662_83381799_83385018_83385238_83385879_83385988_83386144
ENSMUSG00000117840.2_36007367_36010364_1	chr18	+	846	2	NIC	ENSMUSG00000118080.2	novel	539	2	NA	NA	0	1274	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATAGTCCAGATTCCTAA	8020	False	NA	NA	False	NA	NA	NA	36007366	36010364	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_+_36007478_36009629
ENSMUSG00000117869.2_35686465_35690939_1	chr18	+	719	4	FSM	ENSMUSG00000117869.2	ENSMUST00000235679.2	1190	4	41	430	0	4	multi-exon	FALSE	canonical	3	167	junction_1	16.2685791225499	4543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGAATTTCATTGGCAT	NA	False	NA	NA	False	NA	NA	NA	35686464	35690939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389
ENSMUSG00000117869.2_35686465_35691267_1	chr18	+	1047	4	FSM	ENSMUSG00000117869.2	ENSMUST00000235679.2	1190	4	41	102	0	-102	multi-exon	FALSE	canonical	3	167	junction_1	16.2685791225499	4782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTATGTGTAGGT	NA	False	NA	NA	False	NA	NA	NA	35686464	35691267	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389
ENSMUSG00000117916.2_27454049_27461633_1	chr17	-	736	3	NNC	ENSMUSG00000117916.2	novel	2149	2	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_1	34.5	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATACTCCGACTTGGGTT	6249	False	NA	-9	True	NA	NA	NA	27461633	27454048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr17_-_27454490_27455902_27456112_27461547
ENSMUSG00000117916.2_27455729_27461633_1	chr17	-	469	2	FSM	ENSMUSG00000117916.2	ENSMUST00000235429.2	2149	2	0	1680	0	-1680	multi-exon	FALSE	canonical	3	72	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATCTTGCCAAACCAGGC	6249	False	NA	NA	False	ACTAAA	-21	NA	27461633	27455728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27456112_27461547
ENSMUSG00000117955.2_10547842_10554471_2	chr19	+	1335	5	Genic_Genomic	ENSMUSG00000117955.2	novel	3034	1	NA	NA	-3034	562	multi-exon	FALSE	non_canonical	0	0	junction_1	0	293	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGAACACTCGCTCGGCT	NA	False	NA	NA	False	NA	NA	NA	10547841	10554471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr19_+_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554447
ENSMUSG00000117955.2_10547842_10554471_3	chr19	+	1450	5	Genic_Genomic	ENSMUSG00000117955.2	novel	3034	1	NA	NA	-3034	562	multi-exon	FALSE	non_canonical	0	0	junction_1	0	213	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGAACACTCGCTCGGCT	NA	False	NA	NA	False	NA	NA	NA	10547841	10554471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr19_+_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554332
ENSMUSG00000117955.2_10547842_10554755_1	chr19	+	1619	5	Fusion	ENSMUSG00000117955.2_ENSMUSG00000034445.9	novel	3130	8	NA	NA	-3034	846	multi-exon	FALSE	non_canonical	0	0	junction_1	0	373	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCAGCTCACCCCCGGAA	NA	False	NA	NA	False	NA	NA	NA	10547841	10554755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr19_+_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554447
ENSMUSG00000118030.2_35695270_35724476_1	chr18	-	3791	15	NIC	ENSMUSG00000118030.2	novel	363	2	NA	NA	7150	22302	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	541	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAACGGCGCTGGCAGGAG	NA	False	NA	NA	False	NA	NA	NA	35724476	35695269	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_-_35695346_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ENSMUSG00000118030.2_35695270_35724476_2	chr18	-	2698	14	NIC	ENSMUSG00000118030.2	novel	363	2	NA	NA	7150	22302	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	467	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAACGGCGCTGGCAGGAG	NA	False	NA	NA	False	NA	NA	NA	35724476	35695269	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr18_-_35695346_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ENSMUSG00000118049.2_31715096_31731252_1	chr17	+	1829	11	Genic_Genomic	ENSMUSG00000118049.2	novel	2144	1	NA	NA	-15882	-1869	multi-exon	FALSE	non_canonical	0	0	junction_1	0	557	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTGCGACGCGCTGCGCCC	NA	False	NA	NA	False	NA	NA	NA	31715095	31731252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_+_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722641_31728794_31728887_31729551_31729621_31731140
ENSMUSG00000118057.2_82356486_82358106_1	chr18	-	419	2	NNC	ENSMUSG00000118057.2	novel	3579	4	NA	NA	21619	-2111	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	4811	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAATGTTGCTTTCTGAT	NA	False	NA	NA	False	NA	NA	NA	82358106	82356485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr18_-_82356713_82357914
ENSMUSG00000118087.2_46293183_46300468_1	chr19	-	2986	23	NIC	ENSMUSG00000118087.2	novel	1764	2	NA	NA	-6418	82	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGCCGGGAAAGCCCCTT	5135	False	NA	NA	False	NA	NA	NA	46300468	46293182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_46293260_46294368_46294464_46294721_46294804_46294924_46294966_46295209_46295309_46295380_46295533_46295802_46295910_46295998_46296158_46296394_46296500_46296611_46296698_46296783_46296923_46297067_46297194_46297303_46297514_46297593_46297736_46298093_46298209_46298281_46298496_46298646_46298817_46298935_46299039_46299162_46299315_46299447_46299518_46299720_46299894_46300019_46300132_46300211
ENSMUSG00000118099.2_55087934_55091935_1	chr19	+	452	2	ISM	ENSMUSG00000118099.2	ENSMUST00000237370.2	1560	3	0	14312	0	-14312	5prime_fragment	FALSE	canonical	2	5	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAGGACTTTGGAAATC	NA	False	NA	NA	False	AATAAA	-13	NA	55087933	55091935	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_+_55088065_55091614
ENSMUSG00000118100.2_9877058_9880025_1	chr19	+	682	3	FSM	ENSMUSG00000118100.2	ENSMUST00000235986.2	582	3	4	-104	0	0	multi-exon	FALSE	canonical	1	1	junction_2	6	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATGGCCATGGTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	9877057	9880025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_9877385_9878231_9878442_9879880
ENSMUSG00000118134.2_67908045_67926672_1	chr18	-	1552	9	Genic_Genomic	ENSMUSG00000118134.2	novel	585	4	NA	NA	6341	1058	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1216	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGCGGTGCGGCCCGCAGC	NA	False	NA	NA	False	NA	NA	NA	67926672	67908044	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr18_-_67908191_67912274_67912326_67916984_67917132_67917962_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
ENSMUSG00000118243.2_5323960_5345450_1	chr19	+	3189	21	Genic_Genomic	ENSMUSG00000118243.2	novel	833	1	NA	NA	-21264	-606	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1826	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGAAGCTCGGGTCAGCCG	NA	False	NA	NA	False	NA	NA	NA	5323959	5345450	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr19_+_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
ENSMUSG00000118243.2_5341232_5345450_1	chr19	+	745	5	Genic_Genomic	ENSMUSG00000118243.2	novel	833	1	NA	NA	-3992	-606	multi-exon	FALSE	non_canonical	0	0	junction_1	0	405	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGAAGCTCGGGTCAGCCG	5584	False	NA	NA	False	NA	NA	NA	5341231	5345450	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr19_+_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
ENSMUSG00000118295.2_31515189_31526788_1	chr17	-	1068	4	Genic_Genomic	ENSMUSG00000118295.2	novel	2938	1	NA	NA	-11125	-2463	multi-exon	FALSE	non_canonical	0	0	junction_1	0	153	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGAGCGGCCGCCCTT	NA	False	NA	NA	False	NA	NA	NA	31526788	31515188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_-_31515890_31519263_31519482_31526253_31526336_31526721
ENSMUSG00000118295.2_31515189_31526788_2	chr17	-	408	4	Genic_Genomic	ENSMUSG00000118295.2	novel	2938	1	NA	NA	-11125	-2463	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGAGCGGCCGCCCTT	NA	False	NA	NA	False	NA	NA	NA	31526788	31515188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_-_31515230_31519263_31519482_31526253_31526336_31526721
ENSMUSG00000118346.2_8749890_8751817_1	chr19	-	843	5	NNC	ENSMUSG00000118346.2	novel	818	5	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_4	105.570770102335	3068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5088	False	NA	-5	True	AATATA	-16	NA	8751817	8749889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8751070_8751698
ENSMUSG00000118346.2_8749890_8751817_2	chr19	-	625	4	NIC	ENSMUSG00000118346.2	novel	775	5	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	101.226917807908	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5088	False	NA	-5	True	AATATA	-16	NA	8751817	8749889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_8750199_8750391_8750471_8750868_8750987_8751698
ENSMUSG00000118346.2_8749890_8751817_3	chr19	-	709	5	NNC	ENSMUSG00000118346.2	novel	775	5	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	107.522090753482	388	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5088	False	NA	-5	True	AATATA	-16	NA	8751817	8749889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr19_-_8750148_8750391_8750471_8750653_8750789_8750868_8750987_8751698
ENSMUSG00000118346.2_8749890_8751817_4	chr19	-	1023	4	NIC	ENSMUSG00000118346.2	novel	818	5	NA	NA	-8	0	intron_retention	FALSE	canonical	3	161	junction_3	44.0302926025556	2251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5088	False	NA	-5	True	AATATA	-16	NA	8751817	8749889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_8750471_8750653_8750789_8750868_8751057_8751698
ENSMUSG00000118346.2_8749890_8751817_5	chr19	-	642	4	NIC	ENSMUSG00000118346.2	novel	775	5	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_3	106.565577097965	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5088	False	NA	-5	True	AATATA	-16	NA	8751817	8749889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_-_8750199_8750391_8750471_8750653_8750789_8751698
ENSMUSG00000118354.2_42735544_42740956_1	chr19	+	484	5	Genic_Genomic	ENSMUSG00000118354.2	novel	400	3	NA	NA	1334	2935	multi-exon	TRUE	non_canonical	0	0	junction_1	0	24	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGGGCTGGGAGTTACAG	NA	False	NA	NA	False	NA	NA	NA	42735543	42740956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr19_+_42735659_42735785_42735860_42735935_42736030_42737822_42737843_42740775
ENSMUSG00000118382.2_30811835_30831589_1	chr17	+	848	7	Genic_Genomic	ENSMUSG00000118382.2	novel	2107	1	NA	NA	-10244	7404	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3450	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCCCGGGGGACGCCTTT	NA	False	NA	NA	False	NA	NA	NA	30811834	30831589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_+_30812049_30813088_30813189_30815343_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
ENSMUSG00000118382.2_30812840_30831589_1	chr17	+	885	6	Genic_Genomic	ENSMUSG00000118382.2	novel	2107	1	NA	NA	-9239	7404	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1334	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCCCGGGGGACGCCTTT	NA	False	NA	NA	False	NA	NA	NA	30812839	30831589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_+_30813201_30815347_30815438_30816778_30816847_30819012_30819144_30822989_30823077_30831441
ENSMUSG00000118382.2_30812840_30831589_2	chr17	+	911	6	Genic_Genomic	ENSMUSG00000118382.2	novel	2107	1	NA	NA	-9239	7404	multi-exon	FALSE	non_canonical	0	0	junction_1	0	209	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCCCGGGGGACGCCTTT	NA	False	NA	NA	False	NA	NA	NA	30812839	30831589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_+_30813201_30815347_30815438_30816778_30816867_30819012_30819154_30822993_30823077_30831441
ENSMUSG00000118382.2_30812840_30831589_3	chr17	+	882	6	Genic_Genomic	ENSMUSG00000118382.2	novel	2107	1	NA	NA	-9239	7404	multi-exon	FALSE	non_canonical	0	0	junction_1	0	727	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCCCGGGGGACGCCTTT	NA	False	NA	NA	False	NA	NA	NA	30812839	30831589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_+_30813201_30815347_30815438_30816787_30816847_30819012_30819154_30822993_30823077_30831441
ENSMUSG00000118382.2_30812840_30831589_4	chr17	+	883	6	Genic_Genomic	ENSMUSG00000118382.2	novel	2107	1	NA	NA	-9239	7404	multi-exon	FALSE	non_canonical	0	0	junction_1	0	376	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCCCGGGGGACGCCTTT	NA	False	NA	NA	False	NA	NA	NA	30812839	30831589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_+_30813189_30815343_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
ENSMUSG00000118382.2_30822079_30831589_1	chr17	+	559	4	Genic_Genomic	ENSMUSG00000118382.2	novel	2107	1	NA	NA	0	7404	multi-exon	FALSE	non_canonical	0	0	junction_1	0	235	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCCCGGGGGACGCCTTT	NA	False	NA	NA	False	NA	NA	NA	30822078	30831589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_+_30822276_30822360_30822492_30822993_30823077_30831441
ENSMUSG00000118537.2_104310558_104314923_1	chr13	-	1257	2	FSM	ENSMUSG00000118537.2	ENSMUST00000133280.2	1609	2	24	328	24	-328	multi-exon	FALSE	canonical	3	68	junction_1	0	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTTTAATGACTTAAATT	NA	False	NA	NA	False	NA	NA	NA	104314923	104310557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_104311513_104314621
ENSMUSG00000118653.2_56344741_56345728_1	chr9	+	912	2	Genic_Genomic	ENSMUSG00000118653.2	novel	988	1	NA	NA	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAAACATATGGT	NA	False	NA	NA	False	AATAAA	-33	NA	56344740	56345728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr9_+_56344777_56344852
ENSMUSG00000118662.2_124736847_124765523_1	chr5	+	2420	18	FSM	ENSMUSG00000118662.2	ENSMUST00000239501.2	2735	18	35	280	0	-280	multi-exon	TRUE	canonical	3	31	junction_8	6.97499240366195	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTAGTGTTAAGTGAACG	NA	False	NA	34	True	AATAAA	-24	NA	124736846	124765523	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124737020_124737197_124737306_124737769_124737847_124740077_124740274_124741810_124741912_124745798_124745996_124746581_124746706_124748332_124748475_124750706_124750773_124753213_124753349_124754531_124754610_124757093_124757172_124758176_124758289_124761069_124761177_124762380_124762538_124763745_124763872_124763959_124764049_124765169
ENSMUSG00000118662.2_124757034_124765523_1	chr5	+	1083	7	ISM	ENSMUSG00000118662.2	ENSMUST00000239505.1	2913	17	20222	280	20179	-280	3prime_fragment	FALSE	canonical	3	40	junction_1	5.79271573232759	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTAGTGTTAAGTGAACG	NA	False	NA	34	True	AATAAA	-24	NA	124757033	124765523	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr5_+_124757172_124758176_124758289_124761069_124761177_124762380_124762538_124763745_124763872_124763959_124764049_124765169
ENSMUSG00000118664.1_39473062_39618155_1	chr8	+	1536	11	FSM	ENSMUSG00000118664.1	ENSMUST00000239509.1	2811	11	63	1212	0	0	multi-exon	FALSE	canonical	0	0	junction_10	62.7792959501777	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTTTTAGAATTGTGT	NA	False	NA	29	True	AATAAA	-19	NA	39473061	39618155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39564078_39564169_39593682_39593747_39597896_39597972_39610300_39610392_39614047_39614112_39617866
ENSMUSG00000118664.1_39473062_39618155_2	chr8	+	1472	10	FSM	ENSMUSG00000118664.1	ENSMUST00000239508.1	2747	10	63	1212	0	0	multi-exon	FALSE	canonical	3	137	junction_1	15.2153269054433	773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTTTTAGAATTGTGT	NA	False	NA	29	True	AATAAA	-19	NA	39473061	39618155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39564078_39564169_39593682_39593747_39597896_39597972_39610300_39610392_39617866
ENSMUSG00000118664.1_39473062_39618338_1	chr8	+	1655	10	FSM	ENSMUSG00000118664.1	ENSMUST00000239508.1	2747	10	63	1029	0	183	multi-exon	FALSE	canonical	3	137	junction_1	15.2153269054433	1202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTTGTTATTCTTCTTC	NA	False	NA	21	True	TATAAA	-21	NA	39473061	39618338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39564078_39564169_39593682_39593747_39597896_39597972_39610300_39610392_39617866
ENSMUSG00000118664.1_39610309_39618155_1	chr8	+	436	3	ISM	ENSMUSG00000118664.1	ENSMUST00000239509.1	2811	11	137310	1212	137245	0	3prime_fragment	FALSE	canonical	0	0	junction_2	4	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTTTTAGAATTGTGT	NA	False	NA	29	True	AATAAA	-19	NA	39610308	39618155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr8_+_39610392_39614047_39614112_39617866
ENSMUSG00000118666.1_66431304_66439269_1	chr13	-	550	3	NNC	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-7304	-2354	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_1	7.5	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTCTGTATAGTCTCATA	1890	False	NA	NA	False	NA	NA	NA	66439269	66431303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr13_-_66431631_66431830_66431958_66439173
ENSMUSG00000118667.1_112748602_112759408_1	chr12	-	1365	7	NNC	ENSMUSG00000118667.1	novel	11349	7	NA	NA	6869	-9974	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.577350269189626	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGATAAAAAACAGGAAAAGC	NA	False	NA	NA	False	AATAGA	-37	NA	112759408	112748601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr12_-_112749216_112749335_112749512_112749782_112749925_112750608_112750711_112751520_112751620_112751742_112751799_112759232
ENSMUSG00000118668.1_6806577_6808944_1	chr19	-	1753	5	ISM	ENSMUSG00000118668.1	ENSMUST00000239527.1	3140	17	9060	-1	8009	1	3prime_fragment	FALSE	canonical	3	46	junction_1	7.08431365765238	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGATCTGTGGTTTGTGT	NA	False	NA	-5	True	AATAAA	-19	NA	6808944	6806576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_chr19_-_6807508_6807682_6807847_6807954_6808115_6808358_6808554_6808641
ENSMUSG00000118669.2_18225636_18245129_2	chr16	+	1534	6	NNC	ENSMUSG00000118669.2	novel	4232	17	NA	NA	3390	19303	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	201	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCCGAGGCGCGGACGCT	7739	False	NA	NA	False	NA	NA	NA	18225635	18245129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_chr16_+_18226039_18226277_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
ENSMUSG00000118669.2_18225636_18245354_1	chr16	+	1759	6	Fusion	ENSMUSG00000118669.2_ENSMUSG00000075704.18	novel	532	4	NA	NA	3390	-11206	multi-exon	FALSE	non_canonical	0	0	junction_1	0	442	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTCCACAGGGGGTCGC	7739	False	NA	NA	False	NA	NA	NA	18225635	18245354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr16_+_18226039_18226277_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
ENSMUSG00002075511.1_100568701_100577374_2	chr5	+	611	5	Genic_Genomic	ENSMUSG00002075475.1_ENSMUSG00002076301.1_ENSMUSG00002075511.1	novel	179	1	NA	NA	-1126	8	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2044	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGAGAACGTGCCCACGG	NA	False	NA	NA	False	NA	NA	NA	100568700	100577374	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_+_100568832_100569826_100569901_100574589_100574664_100576955_100577098_100577184
ENSMUSG00002075511.1_100568701_100577374_3	chr5	+	606	5	Genic_Genomic	ENSMUSG00002075475.1_ENSMUSG00002076301.1_ENSMUSG00002075511.1	novel	179	1	NA	NA	-1126	8	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3647	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGAGAACGTGCCCACGG	NA	False	NA	NA	False	NA	NA	NA	100568700	100577374	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_+_100568832_100569826_100569901_100574594_100574664_100576955_100577098_100577184
ENSMUSG00002075511.1_100568701_100577374_4	chr5	+	611	5	Genic_Genomic	ENSMUSG00002075475.1_ENSMUSG00002076301.1_ENSMUSG00002075511.1	novel	179	1	NA	NA	-1126	8	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1198	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGAGAACGTGCCCACGG	NA	False	NA	NA	False	NA	NA	NA	100568700	100577374	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_+_100568832_100569826_100569901_100574594_100574664_100576950_100577098_100577184
ENSMUSG00002075511.1_100568701_100577374_5	chr5	+	693	4	Genic_Genomic	ENSMUSG00002075475.1_ENSMUSG00002076301.1_ENSMUSG00002075511.1	novel	179	1	NA	NA	-1126	8	multi-exon	FALSE	non_canonical	0	0	junction_1	0	579	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGAGAACGTGCCCACGG	NA	False	NA	NA	False	NA	NA	NA	100568700	100577374	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_+_100568832_100569826_100569901_100574594_100574664_100576955
ENSMUSG00002076029.1_37269511_37276515_1	chr17	-	944	3	Genic_Genomic	ENSMUSG00002076029.1	novel	76	1	NA	NA	-1191	5738	multi-exon	FALSE	non_canonical	0	0	junction_1	0	746	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGCGCCATTGATTATG	NA	False	NA	NA	False	NA	NA	NA	37276515	37269510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_-_37269589_37275248_37275325_37275725
ENSMUSG00002076029.1_37269511_37276515_2	chr17	-	1043	3	Genic_Genomic	ENSMUSG00002076029.1	novel	76	1	NA	NA	-1191	5738	multi-exon	FALSE	non_canonical	0	0	junction_1	0	759	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGCGCCATTGATTATG	NA	False	NA	NA	False	NA	NA	NA	37276515	37269510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_-_37269688_37275248_37275325_37275725
ENSMUSG00002076029.1_37269511_37276515_3	chr17	-	1334	3	Genic_Genomic	ENSMUSG00002076029.1	novel	76	1	NA	NA	-1191	5738	multi-exon	FALSE	non_canonical	0	0	junction_1	0	310	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGCGCCATTGATTATG	NA	False	NA	NA	False	NA	NA	NA	37276515	37269510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr17_-_37269979_37275248_37275325_37275725
ENSMUSG00002076463.1_51989870_52013441_1	chr11	-	1569	7	Genic_Genomic	ENSMUSG00002076463.1	novel	111	1	NA	NA	-23461	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	226	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGCCCGAACCGGCTGCC	NA	False	NA	NA	False	NA	NA	NA	52013441	51989869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr11_-_51989978_52003946_52004157_52008813_52008988_52009495_52009586_52009969_52010132_52011759_52011879_52012735
ENSMUST00000000001.5	chr3	-	3262	9	FSM	ENSMUSG00000000001.5	ENSMUST00000000001.5	3262	9	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_4	42.0652395095998	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACTTTTATTTGTCTTG	NA	False	NA	-10	True	ATTAAA	-32	NA	108053462	108014595	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_108016633_108016718_108016929_108019250_108019405_108019788_108019919_108023078_108023208_108025616_108025775_108030857_108031000_108031110_108031154_108053203
ENSMUST00000000028.14	chr16	-	2143	20	FSM	ENSMUSG00000000028.16	ENSMUST00000000028.14	2143	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_19	120.274616521947	2467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTCTGTGATCTTATT	NA	False	NA	-2	True	AATAAA	-21	NA	18630722	18599196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264_18630460_18630553
ENSMUST00000000090.8	chr9	+	645	5	FSM	ENSMUSG00000000088.8	ENSMUST00000000090.8	645	5	0	0	0	0	multi-exon	FALSE	canonical	3	7868	junction_4	746.021908190369	38844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAGGTCTTGTGATGTTGT	377	False	NA	22	True	AATAAA	-22	NA	57428561	57439709	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_57428699_57436238_57436356_57437523_57437646_57438951_57439076_57439564
ENSMUST00000000137.8	chr11	-	3631	9	FSM	ENSMUSG00000020152.8	ENSMUST00000000137.8	3631	9	0	0	0	0	multi-exon	FALSE	canonical	3	719	junction_1	58.8430114796991	2158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTTGTCTTTTTCT	1336	False	NA	-4	True	AATAAA	-19	NA	20062913	20012303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
ENSMUST00000000175.6	chr9	-	1231	4	FSM	ENSMUSG00000000171.6	ENSMUST00000000175.6	1231	4	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_3	46.783187863448	10158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTATATAATGAAAATACAT	NA	False	NA	NA	False	AATAAA	-3	NA	50515112	50507656	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_50508551_50510060_50510206_50511847_50511965_50515037
ENSMUST00000000260.13	chr13	+	1580	9	FSM	ENSMUSG00000000253.14	ENSMUST00000000260.13	1580	9	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	10.0428768288773	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGCTGGAGTTTGCGT	NA	False	NA	22	True	AATATA	-16	NA	45660919	45699858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_45661220_45667870_45667991_45670474_45670559_45674327_45674502_45683183_45683266_45685769_45685877_45692500_45692544_45695954_45696115_45699348
ENSMUST00000000287.9	chr11	-	2097	13	FSM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	0	0	0	0	multi-exon	FALSE	canonical	3	2404	junction_3	148.297748540638	3439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5201	False	NA	-9	True	AATAAA	-20	NA	88846291	88814845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
ENSMUST00000000304.14	chr10	+	858	6	FSM	ENSMUSG00000000295.14	ENSMUST00000000304.14	858	6	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_4	15.6025638918737	2721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTGTCTTCTGTTTTGC	NA	False	NA	20	True	ATTAAA	-27	NA	31189378	31204200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_31189480_31190510_31190633_31192288_31192392_31196263_31196333_31202017_31202157_31203876
ENSMUST00000000305.7	chr10	-	1308	7	FSM	ENSMUSG00000000296.9	ENSMUST00000000305.7	1308	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	224.403654159196	1182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTGGATCTTTTATTTC	NA	False	NA	-3	True	ATTAAA	-17	NA	31321954	31208371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_31208966_31214180_31214242_31217135_31217175_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ENSMUST00000000317.13	chr2	+	1620	9	FSM	ENSMUSG00000000308.15	ENSMUST00000000317.13	1620	9	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_3	17.8881070826401	922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTGTGTTATTTCTAT	1635	False	NA	32	True	AGTAAA	-20	NA	121189090	121194218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
ENSMUST00000000335.12	chr16	-	1397	6	FSM	ENSMUSG00000000326.14	ENSMUST00000000335.12	1397	6	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_5	48.2825020064205	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGGGGG	3888	False	NA	NA	False	AAAAAG	-9	NA	18245354	18226293	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
ENSMUST00000000348.15	chr3	-	1594	11	FSM	ENSMUSG00000000339.15	ENSMUST00000000348.15	1594	11	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_7	31.9274176844918	2342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGCTGCTGCTTTTTTA	NA	False	NA	0	True	AATAAA	-20	NA	116301857	116282611	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_116282988_116286631_116286737_116287731_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298118_116300483_116300628_116301399_116301501_116301593
ENSMUST00000000349.11	chr3	+	3301	11	FSM	ENSMUSG00000000340.11	ENSMUST00000000349.11	3301	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_7	26.1091937830336	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTATGCCTTCATAGTA	NA	False	NA	10	True	AATAAA	-19	NA	116306718	116343630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_116306841_116313885_116314010_116317000_116317077_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
ENSMUST00000000365.3	chrX	+	783	6	FSM	ENSMUSG00000000355.14	ENSMUST00000000365.3	783	6	0	0	0	0	multi-exon	FALSE	canonical	3	489	junction_1	58.4486099064811	2697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTAGTTTCAGAAAT	NA	False	NA	17	True	AATAAA	-19	NA	37689531	37702303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_37689656_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
ENSMUST00000000388.15	chr11	+	1858	10	FSM	ENSMUSG00000000378.16	ENSMUST00000000388.15	1858	10	0	0	0	0	multi-exon	TRUE	canonical	3	315	junction_9	41.5204843093617	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCAGTTGTCAAGCATTT	NA	False	NA	15	True	AAAACA	-27	NA	6496886	6546744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_6497030_6519963_6520138_6534519_6534604_6535033_6535218_6539431_6539569_6540752_6540889_6543066_6543125_6543601_6543741_6544147_6544287_6546080
ENSMUST00000000394.14	chr11	-	2290	12	FSM	ENSMUSG00000000384.16	ENSMUST00000000394.14	2290	12	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_8	40.423788103394	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTATCTTCCCAGGCT	NA	False	NA	-27	True	AATAAA	-19	NA	6576043	6566422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
ENSMUST00000000466.13	chr4	-	1888	8	FSM	ENSMUSG00000028494.13	ENSMUST00000000466.13	1888	8	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_2	61.6944412539141	1900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTTATGTTGTTACATGT	NA	False	NA	NA	False	AAGAAA	-42	NA	86588297	86574801	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_86575642_86576817_86576953_86578324_86578507_86580170_86580451_86582665_86582749_86586603_86586800_86586886_86586943_86588181
ENSMUST00000000696.7	chr4	-	514	2	FSM	ENSMUSG00000000682.8	ENSMUST00000000696.7	514	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTCCCACGTGTGATCG	NA	False	NA	-3	True	AATAAA	-19	NA	133822393	133820846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_133821212_133822244
ENSMUST00000000746.12	chr10	+	1676	13	FSM	ENSMUSG00000000730.14	ENSMUST00000000746.12	1676	13	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	3.51484945149386	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTCTGGTGTGGTGTGTG	5591	False	NA	29	True	AATATA	-21	NA	77885675	77899456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_77885746_77885849_77886038_77886431_77886519_77886749_77886795_77887664_77887745_77887825_77887939_77888545_77888718_77889762_77889851_77890805_77890901_77892678_77892755_77893101_77893242_77895480_77895567_77899020
ENSMUST00000000756.6	chr8	+	780	6	FSM	ENSMUSG00000000740.13	ENSMUST00000000756.6	780	6	0	0	0	0	multi-exon	FALSE	canonical	3	17818	junction_5	2681.35350895774	86796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829088	123831983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_123829185_123829391_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
ENSMUST00000000759.9	chr8	-	2140	7	FSM	ENSMUSG00000000743.10	ENSMUST00000000759.9	2140	7	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_1	74.3544439380279	852	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTCAGACTTTTTTTTTT	9745	False	NA	-4	True	AATAAA	-16	NA	123939499	123931002	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_123932486_123932882_123933071_123934211_123934341_123934702_123934850_123935759_123935838_123936954_123936975_123939404
ENSMUST00000000767.6	chr11	-	2942	18	FSM	ENSMUSG00000000751.14	ENSMUST00000000767.6	2942	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	554.797565874568	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTCTTTGACTGTAAAG	NA	False	NA	-16	True	AATAAA	-21	NA	75239136	75191175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75230538_75230602_75231115_75231225_75231853_75231933_75232969_75233021_75239051
ENSMUST00000000793.13	chr14	-	2016	9	FSM	ENSMUSG00000000776.14	ENSMUST00000000793.13	2016	9	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_3	16.2244992218558	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTAAGTGGTTCTGCT	1731	False	NA	-7	True	AATAAA	-17	NA	70680887	70676196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_70677019_70677157_70677311_70677453_70677720_70678038_70678208_70678476_70678602_70678743_70678896_70679791_70679836_70680390_70680561_70680772
ENSMUST00000000804.7	chrX	+	4692	17	FSM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	0	0	0	0	multi-exon	TRUE	canonical	3	179	junction_1	98.1322449554681	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCGTTTGATTGTCCAT	NA	False	NA	18	True	AATAAA	-18	NA	13147208	13160291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_13147397_13150416_13150475_13151153_13151202_13152272_13152406_13153463_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
ENSMUST00000000904.15	chr16	+	1412	8	FSM	ENSMUSG00000000884.18	ENSMUST00000000904.15	1412	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	116.273604143022	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTCAAGGTGGGAACTT	NA	False	NA	17	True	AATAAA	-19	NA	18317533	18383292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18317602_18317795_18317891_18359184_18359326_18359721_18359848_18362864_18363024_18366842_18366942_18371116_18371333_18382784
ENSMUST00000000924.13	chr10	-	2288	8	FSM	ENSMUSG00000000901.18	ENSMUST00000000924.13	2288	8	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_3	14.5349683908307	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	5056	False	NA	-3	True	ATTAAA	-17	NA	75768336	75759055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
ENSMUST00000000925.10	chr10	-	1660	9	FSM	ENSMUSG00000000902.14	ENSMUST00000000925.10	1660	9	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_7	283.203990084886	2984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCAGTAGCATAAAACTG	6861	False	NA	-2	True	AATAAA	-20	NA	75757451	75732602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752606_75752746_75757136
ENSMUST00000000940.15	chr5	+	2243	10	FSM	ENSMUSG00000000916.16	ENSMUST00000000940.15	2243	10	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_9	22.1966519552993	1039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAATGTTTAAATATTT	NA	False	NA	NA	False	AATAAA	-12	NA	135398806	135405652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
ENSMUST00000000958.9	chr15	-	1903	14	FSM	ENSMUSG00000000934.10	ENSMUST00000000958.9	1903	14	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	11.6872458678823	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTTGTCACTGTGAC	NA	False	NA	-7	True	AATAAA	-11	NA	75550649	75528883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75529064_75529532_75529680_75535204_75535300_75535863_75535992_75537435_75537551_75538101_75538171_75539268_75539455_75539670_75539815_75540474_75540620_75541135_75541324_75541910_75542034_75546140_75546263_75547867_75547981_75550501
ENSMUST00000000985.7	chr14	+	2538	10	FSM	ENSMUSG00000000959.8	ENSMUST00000000985.7	2538	10	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_4	29.1475598792348	3642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGTTCAGAGTTGAAGCT	NA	False	NA	NA	False	AATAAA	-21	NA	54598297	54607130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_54598375_54598778_54598926_54600738_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
ENSMUST00000001042.10	chr3	+	2027	14	FSM	ENSMUSG00000001016.13	ENSMUST00000001042.10	2027	14	0	0	0	0	multi-exon	FALSE	canonical	3	1252	junction_8	67.3276893371464	4032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGTACAAGCATTTATTTA	NA	False	NA	18	True	AATAAA	-23	NA	90383453	90395686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
ENSMUST00000001080.16	chr11	-	2367	5	FSM	ENSMUSG00000001053.16	ENSMUST00000001080.16	2367	5	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_4	13.2382022948737	363	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGGAGGAATGTTATTC	NA	False	NA	0	True	AATATA	-32	NA	51541669	51533889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_51534976_51535101_51535357_51535999_51536513_51536753_51537102_51541504
ENSMUST00000001081.10	chr11	-	1946	10	FSM	ENSMUSG00000001054.10	ENSMUST00000001081.10	1946	10	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_3	13.1581078605222	892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAATGATTGCATGGTCTT	NA	False	NA	-9	True	AATATA	-19	NA	51526723	51514499	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_51514974_51515055_51515211_51515301_51515405_51516495_51516662_51517562_51517730_51517825_51517927_51518448_51518590_51518706_51518853_51520302_51520489_51526416
ENSMUST00000001083.4	chr11	+	825	3	FSM	ENSMUSG00000001056.4	ENSMUST00000001083.4	825	3	0	0	0	0	multi-exon	FALSE	canonical	3	5400	junction_2	19.5	17883	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACGTGGCAAGTGTGTGG	NA	False	NA	16	True	AGTAAA	-11	NA	51510597	51514256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_51510979_51513311_51513418_51513918
ENSMUST00000001109.11	chr5	-	1907	13	FSM	ENSMUSG00000001082.13	ENSMUST00000001109.11	1907	13	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_12	65.1670929227321	1308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCGTCTTACTATTCTTT	NA	False	NA	0	True	AATAAA	-24	NA	34794533	34790985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794270
ENSMUST00000001126.4	chr11	+	1978	5	FSM	ENSMUSG00000020829.10	ENSMUST00000001126.4	1978	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	12.7549010188241	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGCTTTGGGGCTTTCTG	8337	False	NA	26	True	AGTAAA	-27	NA	78356522	78362771	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78356832_78357176_78358030_78359450_78359535_78361520_78361678_78362196
ENSMUST00000001127.11	chr11	+	2054	11	FSM	ENSMUSG00000001100.11	ENSMUST00000001127.11	2054	11	0	0	0	0	multi-exon	FALSE	canonical	3	1074	junction_9	50.3904752904753	4687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGAGTATTGTTCTTAA	1635	False	NA	18	True	ATTAAA	-15	NA	78403018	78413562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412058_78412619
ENSMUST00000001148.11	chr10	-	2013	16	FSM	ENSMUSG00000001120.16	ENSMUST00000001148.11	2013	16	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	18.4407760742931	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTCTGACTTCTCTCTG	1236	False	NA	-3	True	AATAAA	-18	NA	76797622	76597690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606874_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
ENSMUST00000001155.11	chrX	+	2358	16	FSM	ENSMUSG00000001127.13	ENSMUST00000001155.11	2358	16	0	0	0	0	multi-exon	FALSE	non_canonical	1	66	junction_12	87.7031356337959	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGCTTGTTTATTTTG	6273	False	NA	23	True	NA	NA	NA	20714781	20726758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
ENSMUST00000001156.8	chrX	-	1636	9	FSM	ENSMUSG00000001128.8	ENSMUST00000001156.8	1636	9	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	23.4837044564949	327	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATAATATTGTGAAATAT	NA	False	NA	73	True	AATAGA	-13	NA	20797794	20791692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_20791999_20793519_20793632_20793773_20793963_20794191_20794366_20794566_20794759_20794881_20795053_20795834_20796011_20797390_20797542_20797629
ENSMUST00000001162.10	chrX	-	636	7	FSM	ENSMUSG00000001134.10	ENSMUST00000001162.10	636	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_5	225.323039705713	2302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAATCACATAGTCCTTT	NA	False	NA	-14	True	ATTAAA	-14	NA	20828239	20818167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827873_20828026_20828172
ENSMUST00000001171.13	chr1	-	2174	7	FSM	ENSMUSG00000001143.14	ENSMUST00000001171.13	2174	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	67.569717082926	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTCTGGCTCAGTGGCC	NA	False	NA	-3	True	CATAAA	-21	NA	36484352	36462266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_36463585_36463918_36464039_36467182_36467298_36467380_36467543_36478689_36478808_36482571_36482691_36484130
ENSMUST00000001186.11	chr6	-	885	6	FSM	ENSMUSG00000001158.14	ENSMUST00000001186.11	885	6	0	0	0	0	multi-exon	FALSE	canonical	3	1763	junction_5	100.541732628794	11483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATAGACTTGTTTTGTTT	7646	False	NA	1	True	ATTAAA	-29	NA	86661504	86652132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837_86659959_86661428
ENSMUST00000001187.15	chr6	-	2002	13	FSM	ENSMUSG00000029994.18	ENSMUST00000001187.15	2002	13	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_5	17.8737858950537	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTATTCTTTCTCTGAT	4606	False	NA	-2	True	ATTAAA	-18	NA	86770566	86713822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_86714806_86718817_86718941_86720099_86720159_86721606_86721703_86725868_86725963_86728044_86728102_86729134_86729215_86730784_86730876_86731834_86731949_86734800_86734896_86737655_86737744_86742743_86742790_86770490
ENSMUST00000001226.11	chr15	+	2375	18	FSM	ENSMUSG00000022436.17	ENSMUST00000001226.11	2375	18	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_17	50.4832700370451	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGTAACTGGCCAAACG	4533	False	NA	83	True	AATAAA	-16	NA	78784102	78796247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78795538
ENSMUST00000001242.9	chr10	-	1378	7	FSM	ENSMUSG00000053329.8	ENSMUST00000001242.9	1378	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	5.05799696849784	1462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATGTCTCAGGCCTTGTG	4131	False	NA	-2	True	AATAAA	-29	NA	78005616	77997899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_77998553_77999230_77999388_78000671_78000765_78003228_78003349_78004642_78004757_78005206_78005260_78005428
ENSMUST00000001258.15	chr17	+	3586	17	FSM	ENSMUSG00000001228.15	ENSMUST00000001258.15	3586	17	0	0	0	0	multi-exon	TRUE	canonical	3	1413	junction_6	319.856779473251	772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	420	False	NA	36	True	AATAAA	-20	NA	56610320	56630486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ENSMUST00000001279.15	chr7	-	2167	10	FSM	ENSMUSG00000001247.17	ENSMUST00000001279.15	2167	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_7	47.1029867208513	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAAGCCTCTTGTTTTGCT	NA	False	NA	-3	True	AATAAA	-17	NA	30672889	30657199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30662235_30662293_30665393_30665514_30671292_30671638_30672504
ENSMUST00000001304.9	chr12	-	1472	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	0	0	0	0	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	17078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638772	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
ENSMUST00000001335.7	chr15	+	570	5	FSM	ENSMUSG00000001289.13	ENSMUST00000001335.7	570	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	370.883741892254	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATGGGGTGGTCTATTCT	407	False	NA	26	True	AATAAA	-14	NA	102234623	102239921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102234696_102234867_102234971_102236956_102237032_102237146_102237253_102239707
ENSMUST00000001339.6	chr1	-	1321	5	FSM	ENSMUSG00000001305.6	ENSMUST00000001339.6	1321	5	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_3	58.7962583843564	9909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTTATCTTTTCTATT	NA	False	NA	-30	True	CATAAA	-6	NA	186481555	186453174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_186453744_186468312_186468512_186469784_186469883_186471800_186472061_186481360
ENSMUST00000001347.7	chr11	+	1394	5	FSM	ENSMUSG00000001313.13	ENSMUST00000001347.7	1394	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	23.8051990119806	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGACTTAGTTTTGTT	NA	False	NA	21	True	AATAAA	-21	NA	101359000	101362679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101359266_101359758_101359847_101360838_101360949_101361543_101361679_101361883
ENSMUST00000001402.14	chr9	-	1850	13	FSM	ENSMUSG00000001366.15	ENSMUST00000001402.14	1850	13	0	0	0	0	multi-exon	FALSE	non_canonical	2	18	junction_12	15.7920514464996	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGTGTGGATGGCCTT	NA	False	NA	0	True	AATAAA	-28	NA	78016347	77988783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78016283
ENSMUST00000001412.17	chr6	+	3788	28	FSM	ENSMUSG00000001376.18	ENSMUST00000001412.17	3788	28	0	0	0	0	multi-exon	FALSE	canonical	2	105	junction_25	21.3495308879564	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCTGTCTTTGAATTCAA	NA	False	NA	NA	False	TATAAA	-22	NA	3498381	3603531	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_3498556_3504868_3504938_3516621_3516745_3517788_3517861_3519216_3519271_3520206_3520278_3522255_3522374_3522682_3522719_3524092_3524176_3532157_3532201_3533471_3533571_3536831_3536973_3545509_3545643_3551012_3551105_3554995_3555091_3555367_3555467_3562267_3562359_3565515_3565693_3567734_3567854_3571001_3571109_3578793_3578916_3588005_3588087_3592426_3592576_3594017_3594115_3594742_3594902_3598471_3598594_3600127_3600318_3602659
ENSMUST00000001416.8	chr18	-	1989	13	FSM	ENSMUSG00000001380.8	ENSMUST00000001416.8	1989	13	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_8	68.8118913334671	2089	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCTGTGTCCTTGATGC	NA	False	NA	-2	True	AATAAA	-16	NA	36916258	36899580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36903952_36904148_36904248_36904380_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
ENSMUST00000001419.10	chr18	+	2310	6	FSM	ENSMUSG00000001383.10	ENSMUST00000001419.10	2310	6	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_5	81.4331627778266	4875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGACTTTTCTTTGAT	6616	False	NA	22	True	AATAAA	-22	NA	36926928	36932719	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_36927013_36927349_36927444_36928093_36928218_36929089_36929164_36929551_36929698_36930931
ENSMUST00000001452.14	chr3	+	1977	14	FSM	ENSMUSG00000001416.14	ENSMUST00000001452.14	1977	14	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_3	121.304155843285	10534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3804	False	NA	23	True	ATTAAA	-15	NA	88204422	88229074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
ENSMUST00000001460.14	chr6	+	3482	24	FSM	ENSMUSG00000001424.15	ENSMUST00000001460.14	3482	24	0	0	0	0	multi-exon	FALSE	canonical	3	582	junction_3	55.1049865830108	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTGGAGCCAGAACACTG	-7	True	NA	30	True	AATAAA	-31	NA	28480346	28888831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233
ENSMUST00000001485.10	chr11	+	1708	5	FSM	ENSMUSG00000001445.11	ENSMUST00000001485.10	1708	5	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_1	35.8643276808586	1741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTATGTTTATATCTGTA	873	False	NA	10	True	NA	NA	NA	96932385	96940039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_96932479_96935353_96935524_96937855_96938021_96938238_96938384_96938904
ENSMUST00000001507.5	chr5	-	3931	10	FSM	ENSMUSG00000001467.6	ENSMUST00000001507.5	3931	10	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_6	50.6347365275053	2912	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGATTTTCTTTGCCAAT	NA	False	NA	-22	True	ATTAAA	-22	NA	4154746	4131144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
ENSMUST00000001513.8	chr18	+	1758	4	FSM	ENSMUSG00000001473.8	ENSMUST00000001513.8	1758	4	0	0	0	0	multi-exon	FALSE	canonical	3	606	junction_3	34.2928563989645	767	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCGGTCTCTTGAACTTC	NA	False	NA	12	True	AATAAA	-14	NA	67523786	67535819	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_67523885_67524394_67524504_67526015_67526127_67534379
ENSMUST00000001559.11	chr6	-	2320	12	FSM	ENSMUSG00000001518.13	ENSMUST00000001559.11	2320	12	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_3	19.6628609101919	521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCTCTCCAATCTGGAC	NA	False	NA	0	True	AATAAA	-24	NA	128401894	128386406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_128387381_128387455_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
ENSMUST00000001565.15	chr17	-	1679	14	FSM	ENSMUSG00000001524.15	ENSMUST00000001565.15	1679	14	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_8	17.8418429806661	511	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGCGGCTTCAGACGTCTG	NA	False	NA	-1	True	AATAAA	-17	NA	35984631	35978621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520_35980654_35980839_35980924_35981081_35981151_35981256_35981369_35981548_35981638_35981757_35981855_35982117_35982250_35982884_35982990_35983577_35983721_35984447
ENSMUST00000001566.10	chr17	-	2649	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	0	0	0	0	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	35189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGAGGCTGTGTGCTC	NA	False	NA	-7	True	AATAAA	-16	NA	36149198	36144812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
ENSMUST00000001569.15	chr17	+	1825	13	FSM	ENSMUSG00000059714.14	ENSMUST00000001569.15	1825	13	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_8	11.7434970184448	1293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATACTTCTTTCCTCACT	NA	False	NA	25	True	ATTAAA	-23	NA	36134121	36143683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_36134394_36134698_36134756_36135018_36135095_36135170_36135262_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36140917_36141010_36141057_36141545_36141684_36141834_36142000_36143398
ENSMUST00000001592.15	chr11	-	3205	14	FSM	ENSMUSG00000001552.15	ENSMUST00000001592.15	3205	14	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_13	65.0294425807792	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	NA	False	NA	-17	True	AATAAA	-18	NA	100288575	100261444	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277215_100288461
ENSMUST00000001620.13	chr3	+	2459	17	FSM	ENSMUSG00000027680.16	ENSMUST00000001620.13	2459	17	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_14	394.615947591769	2668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTTATTTTGTTTTCAA	4694	False	NA	17	True	ATTAAA	-20	NA	34074091	34123491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34119122_34119204_34122309_34122402_34123065
ENSMUST00000001631.7	chr11	-	2482	22	FSM	ENSMUSG00000001588.13	ENSMUST00000001631.7	2482	22	0	0	0	0	multi-exon	TRUE	canonical	3	20	junction_20	9.40183800238705	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTCTTAGTTCATTTA	9573	False	NA	-6	True	ATTAAA	-15	NA	69786365	69772392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69772552_69772807_69772858_69773207_69773319_69773410_69773521_69774409_69774583_69775147_69775318_69775411_69775507_69775621_69775692_69776218_69776431_69776518_69776643_69777793_69777895_69777981_69778034_69780062_69780173_69780261_69780337_69780443_69780540_69780645_69780691_69780824_69781009_69781259_69781319_69781414_69781469_69781689_69781810_69785425_69785484_69786111
ENSMUST00000001713.10	chr10	-	1037	5	FSM	ENSMUSG00000001663.11	ENSMUST00000001713.10	1037	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	2.87228132326901	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCCGTGTTGTTTCTTT	9576	False	NA	NA	False	AATAAA	-24	NA	75634418	75619646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_75620068_75622628_75622806_75629910_75630062_75632876_75632965_75634218
ENSMUST00000001715.10	chr10	-	1880	5	FSM	ENSMUSG00000001665.12	ENSMUST00000001715.10	1880	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	2.34520787991171	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTTGCTTCTGGATCCT	NA	False	NA	5	True	AATAAA	-23	NA	75617248	75609948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_75610845_75611704_75611882_75612577_75612729_75613934_75614023_75616680
ENSMUST00000001716.8	chr10	-	649	3	FSM	ENSMUSG00000001666.9	ENSMUST00000001716.8	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_2	12	5844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGACTTCTTTGCTTC	NA	False	NA	-7	True	AATAAA	-18	NA	75609248	75607066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_75607341_75608571_75608748_75609049
ENSMUST00000001724.12	chr1	-	2258	13	FSM	ENSMUSG00000001674.12	ENSMUST00000001724.12	2258	13	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_12	122.318232492135	2322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTATACCTTTCCCT	NA	False	NA	-16	True	CATAAA	-23	NA	121495718	121481563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_121481868_121482944_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121488001_121489009_121489325_121489418_121489520_121489787_121489924_121492221_121492333_121493609_121493898_121495519
ENSMUST00000001809.15	chr15	-	2817	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	0	0	0	0	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	8265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGTTATGCTTTTATTT	377	False	NA	-7	True	AATAAA	-16	NA	36609217	36595904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
ENSMUST00000001834.4	chr10	+	2009	12	Genic_Genomic	ENSMUSG00000085111.4	novel	483	3	NA	NA	9863	11617	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4174	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGGGAAGATGGCAAGC	NA	False	NA	NA	False	NA	NA	NA	85774500	85793687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr10_+_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
ENSMUST00000001836.11	chr10	+	2572	15	FSM	ENSMUSG00000001785.14	ENSMUST00000001836.11	2572	15	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	18.5957258639765	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCACCTCACTTTGACT	NA	False	NA	8	True	AATAAA	-19	NA	85707694	85724960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_85707879_85710141_85710201_85710312_85710498_85712161_85712248_85712349_85712447_85714342_85714454_85715125_85715257_85715693_85715756_85717866_85717964_85718734_85718797_85720326_85720439_85721473_85721565_85721660_85721783_85723086_85723193_85723893
ENSMUST00000001845.13	chr7	-	1600	12	FSM	ENSMUSG00000001794.14	ENSMUST00000001845.13	1600	12	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_11	486.143841584714	4438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTAACTTGGTTATTTT	8309	False	NA	-8	True	NA	NA	NA	29898236	29886366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430_29894590_29898182
ENSMUST00000001900.9	chr5	-	1364	8	FSM	ENSMUSG00000001844.11	ENSMUST00000001900.9	1364	8	0	0	0	0	multi-exon	TRUE	canonical	3	167	junction_7	40.248209492435	1606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5269	False	NA	-13	True	AATACA	-26	NA	143315011	143302243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314920
ENSMUST00000002013.11	chr9	-	696	5	FSM	ENSMUSG00000001948.11	ENSMUST00000002013.11	696	5	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_2	1.92028643696715	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTGGTTGTCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	37525018	37514585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_37514783_37517088_37517167_37518912_37518984_37523131_37523315_37524851
ENSMUST00000002048.8	chr11	+	1383	5	FSM	ENSMUSG00000001983.8	ENSMUST00000002048.8	1383	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	5.93717104351896	376	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCTTGAGGTGTCCTGA	874	False	NA	26	True	NA	NA	NA	105956886	105964438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_105957345_105960331_105960439_105962692_105962821_105963356_105963535_105963926
ENSMUST00000002064.15	chr2	+	1160	8	FSM	ENSMUSG00000001999.16	ENSMUST00000002064.15	1160	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	50.5988626152721	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGAATAGTGTTGATGACT	2211	False	NA	NA	False	AATAAA	-20	NA	126912586	126939004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126933958_126934067_126937005_126937178_126938654
ENSMUST00000002090.3	chrX	+	765	6	FSM	ENSMUSG00000002014.13	ENSMUST00000002090.3	765	6	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_1	441.755135793575	10947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5466	False	NA	48	True	AATAAA	-30	NA	72830667	72834432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_72830913_72832443_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
ENSMUST00000002091.6	chrX	-	1219	8	FSM	ENSMUSG00000002015.6	ENSMUST00000002091.6	1219	8	0	0	0	0	multi-exon	FALSE	canonical	3	2403	junction_7	231.225131040053	13332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTTGTGTCTAACTGAG	NA	False	NA	-13	True	AATAAA	-17	NA	72759781	72729783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72730202_72731442_72731544_72732265_72732387_72733152_72733289_72750602_72750751_72756050_72756152_72758398_72758535_72759723
ENSMUST00000002112.15	chr7	+	785	6	FSM	ENSMUSG00000002043.18	ENSMUST00000002112.15	785	6	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_1	62.2009646227452	5737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	507	False	NA	21	True	AGTAAA	-22	NA	19242636	19250070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_19242758_19248125_19248194_19248346_19248465_19248931_19249016_19249128_19249223_19249770
ENSMUST00000002127.14	chr11	+	1329	5	FSM	ENSMUSG00000002058.14	ENSMUST00000002127.14	1329	5	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_3	19.8557296516648	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTGTCTATAGGGAA	NA	False	NA	19	True	AATAAA	-26	NA	78234307	78239990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78234613_78238043_78238158_78238622_78238726_78238912_78239086_78239356
ENSMUST00000002128.14	chr11	+	1368	11	FSM	ENSMUSG00000002059.19	ENSMUST00000002128.14	1368	11	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	27.8790243731735	1179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	6025	False	NA	21	True	ATTAAA	-15	NA	78079255	78083014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78079338_78080003_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
ENSMUST00000002133.9	chr11	+	1268	3	FSM	ENSMUSG00000002064.11	ENSMUST00000002133.9	1268	3	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	4	2883	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTCATTTATTAAG	NA	False	NA	19	True	NA	NA	NA	78136571	78146322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78136997_78141841_78142039_78145676
ENSMUST00000002275.15	chr7	+	1969	15	FSM	ENSMUSG00000002205.17	ENSMUST00000002275.15	1969	15	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	19.1081775420785	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGAGAGTTCAGTGTTC	NA	False	NA	16	True	AATAAA	-16	NA	44397836	44426939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44398076_44401538_44401601_44403239_44403380_44407169_44407320_44409123_44409319_44410301_44410367_44412414_44412482_44413548_44413634_44414206_44414313_44416545_44416639_44417866_44418000_44418956_44419078_44420287_44420347_44424799_44424960_44426645
ENSMUST00000002280.11	chr7	+	2242	14	FSM	ENSMUSG00000002210.12	ENSMUST00000002280.11	2242	14	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_3	14.7828462881374	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGGTTTGTTCTTTCTC	NA	False	NA	19	True	AATAAA	-19	NA	24099043	24122203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_24099317_24102816_24102973_24104951_24105027_24105112_24105378_24105459_24105558_24106945_24107059_24114363_24114476_24115923_24116020_24116345_24116432_24119438_24119546_24120000_24120109_24120237_24120367_24120544_24120690_24121724
ENSMUST00000002297.12	chr3	-	3498	20	FSM	ENSMUSG00000002227.16	ENSMUST00000002297.12	3498	20	0	0	0	0	multi-exon	TRUE	canonical	2	35	junction_17	294.113899959836	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	-25	True	AAGAAA	-21	NA	104725558	104702151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711702_104711786_104712030_104712219_104712424_104725251
ENSMUST00000002298.7	chr3	+	1721	10	FSM	ENSMUSG00000002228.8	ENSMUST00000002298.7	1721	10	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	13.4200881305638	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTGTGTCATTATTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	104688371	104693334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_104688726_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692610_104692713_104692866_104693017
ENSMUST00000002303.12	chr3	+	1202	5	FSM	ENSMUSG00000002233.14	ENSMUST00000002303.12	1202	5	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	22.8965062837106	2772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCAGCTTCCTGTCTTT	NA	False	NA	13	True	AATAAA	-20	NA	104696203	104701775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_104696400_104699204_104699369_104699880_104700002_104700215_104700347_104701185
ENSMUST00000002327.6	chr17	+	2277	11	FSM	ENSMUSG00000002257.9	ENSMUST00000002327.6	2277	11	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	14.7461859475595	163	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGCCCTTCCCTCCCTC	NA	False	NA	17	True	AATAAA	-22	NA	28426751	28447582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_28426913_28435938_28436080_28436574_28436761_28438718_28438956_28439050_28439198_28442645_28442755_28442861_28443161_28444818_28444986_28445074_28445274_28446780_28446872_28447042
ENSMUST00000002389.9	chr14	-	2791	15	FSM	ENSMUSG00000022218.17	ENSMUST00000002389.9	2791	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_14	57.2163812707015	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGTCTGTCTAGGCCAA	802	False	NA	-8	True	AATAAA	-37	NA	55950545	55937475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950391
ENSMUST00000002391.15	chr14	-	2382	5	FSM	ENSMUSG00000002320.16	ENSMUST00000002391.15	2382	5	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_2	41.5060236592232	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATATTTGAACTTTTTA	5206	False	NA	-44	True	ATTAAA	-22	NA	55880797	55873516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050
ENSMUST00000002395.8	chr14	+	2184	20	FSM	ENSMUSG00000002324.9	ENSMUST00000002395.8	2184	20	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_6	6.49738920505725	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCCTCTTTTTTTTTTT	1328	False	NA	9	True	ATTAAA	-21	NA	55855493	55862852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55855811_55856002_55856116_55856198_55856268_55856354_55856498_55856577_55856654_55857036_55857158_55858691_55858777_55859671_55859752_55859883_55860020_55860101_55860175_55860250_55860343_55860620_55860671_55860953_55861092_55861377_55861445_55861532_55861700_55861805_55861855_55862179_55862244_55862341_55862459_55862529_55862637_55862732
ENSMUST00000002400.7	chr14	-	1733	6	FSM	ENSMUSG00000002329.8	ENSMUST00000002400.7	1733	6	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_4	50.5750926840476	3532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTAAGCTGTATCTG	2285	False	NA	-8	True	AATAAA	-29	NA	55897965	55895335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897556_55897624_55897686_55897794
ENSMUST00000002403.10	chr14	-	1477	9	FSM	ENSMUSG00000002332.17	ENSMUST00000002403.10	1477	9	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	15.4833580014156	838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGAGTTCTCATTCTGT	NA	False	NA	0	True	AATAAA	-20	NA	55983147	55976476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55976878_55977008_55977090_55977392_55977463_55978183_55978331_55978639_55978773_55980910_55980991_55981114_55981259_55982374_55982546_55982897
ENSMUST00000002418.15	chr8	+	810	6	FSM	ENSMUSG00000002345.19	ENSMUST00000002418.15	810	6	0	0	0	0	multi-exon	TRUE	canonical	3	86	junction_5	44.6183818621877	1042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACCGTCTCTTTCCATG	8613	False	NA	17	True	AATACA	-11	NA	70592148	70599906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673_70597785_70598460_70598541_70599739
ENSMUST00000002445.10	chr17	+	2373	16	FSM	ENSMUSG00000002372.10	ENSMUST00000002445.10	2373	16	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_2	28.8962896503263	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	ATTAAA	-14	NA	56980357	57018764	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_56980412_56993005_56993062_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
ENSMUST00000002452.8	chr17	+	545	4	FSM	ENSMUSG00000002379.8	ENSMUST00000002452.8	545	4	0	0	0	0	multi-exon	FALSE	canonical	3	2627	junction_1	54.2975342186201	44062	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATGTCTTAAAGGCAGG	NA	False	NA	18	True	AATAAA	-18	NA	57024766	57029137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57024943_57028034_57028128_57028318_57028442_57028984
ENSMUST00000002473.10	chr8	+	1433	9	FSM	ENSMUSG00000031820.10	ENSMUST00000002473.10	1433	9	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_4	29.4573314303927	935	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGTATGGCTTCAGGC	NA	False	NA	89	True	ACTAAA	-7	NA	71849504	71857263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71849665_71850322_71850670_71851035_71851095_71852169_71852291_71852372_71852452_71854323_71854349_71855389_71855520_71855619_71855707_71856838
ENSMUST00000002490.7	chr6	+	491	4	FSM	ENSMUSG00000002416.14	ENSMUST00000002490.7	491	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	1056.98470502967	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTCATTAAAGGTGTAAAT	NA	False	NA	-19	True	AAGAAA	-7	NA	39569518	39576356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_39569738_39573384_39573530_39575199_39575296_39576325
ENSMUST00000002529.7	chr2	+	3054	21	FSM	ENSMUSG00000002455.15	ENSMUST00000002529.7	3054	21	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_3	47.7921280128851	1178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGGGGCTTGGGCCTCA	2494	False	NA	28	True	ATTAAA	-16	NA	181243111	181297453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278685_181278905_181282384_181282508_181287263_181287386_181289081_181289221_181290818_181290939_181291214_181291392_181291889_181292024_181292878_181292971_181294226_181294342_181296628_181296756_181297214
ENSMUST00000002532.9	chr2	-	1511	6	FSM	ENSMUSG00000002458.14	ENSMUST00000002532.9	1511	6	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_5	20.8461027532726	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTGTTCTTTCAAGTT	NA	False	NA	-15	True	AATAAA	-14	NA	181335770	181330214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335671
ENSMUST00000002551.5	chr18	+	858	4	FSM	ENSMUSG00000002477.6	ENSMUST00000002551.5	858	4	0	0	0	0	multi-exon	FALSE	canonical	3	1823	junction_2	40.4337592722825	28902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCGGTGCATGTCTTTA	-32	True	NA	8	True	AATAAA	-15	NA	10617774	10628230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_10617927_10623630_10623708_10626825_10627018_10627793
ENSMUST00000002599.11	chr15	-	1821	11	FSM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	0	0	0	0	multi-exon	FALSE	canonical	3	1143	junction_7	140.604729650179	2944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGAAGTCCCTGTGTCT	NA	False	NA	-8	True	CATAAA	-17	NA	75952761	75942038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
ENSMUST00000002625.15	chr2	-	2005	7	FSM	ENSMUSG00000002550.17	ENSMUST00000002625.15	2005	7	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_2	20.9741904889478	329	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTGTCCTGTTTTATTT	NA	False	NA	NA	False	AATAAA	-17	NA	32150171	32145013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_32146224_32146629_32146679_32148101_32148197_32148288_32148432_32148582_32148680_32149591_32149752_32149920
ENSMUST00000002655.8	chr11	-	747	4	FSM	ENSMUSG00000002580.8	ENSMUST00000002655.8	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	749	junction_2	62.9567752950829	5961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCGTGTGTTTATGTCCA	NA	False	NA	1	True	AATAAA	-26	NA	98329817	98328533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_98328972_98329062_98329140_98329472_98329571_98329683
ENSMUST00000002683.3	chr7	-	3032	5	FSM	ENSMUSG00000002608.9	ENSMUST00000002683.3	3032	5	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	5.52268050859363	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTCATCTGTTATGTAA	NA	False	NA	-3	True	ATTAAA	-24	NA	25418513	25410530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_25412539_25413777_25413908_25414175_25414446_25415159_25415613_25418342
ENSMUST00000002710.10	chr7	-	1295	7	FSM	ENSMUSG00000002635.12	ENSMUST00000002710.10	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_2	61.3994209165599	5749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTTGGTTTATTGTTCA	5732	False	NA	-6	True	TATAAA	-15	NA	33896086	33883923	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_33884237_33885718_33885868_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
ENSMUST00000002733.7	chr17	-	1717	13	FSM	ENSMUSG00000002658.10	ENSMUST00000002733.7	1717	13	0	0	0	0	multi-exon	FALSE	canonical	3	510	junction_7	59.552672763977	1698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTGTGCGAGTCATCA	NA	False	NA	-6	True	AATAAA	-13	NA	57318288	57310404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
ENSMUST00000002735.9	chr17	+	983	6	FSM	ENSMUSG00000002660.9	ENSMUST00000002735.9	983	6	0	0	0	0	multi-exon	FALSE	canonical	3	1307	junction_4	119.017645750536	11253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGAAGCACCTTCCATT	NA	False	NA	33	True	ATTAAA	-21	NA	57297304	57303188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57297514_57297605_57297678_57298293_57298391_57299825_57300014_57300447_57300554_57302877
ENSMUST00000002737.7	chr17	+	917	4	FSM	ENSMUSG00000002661.15	ENSMUST00000002737.7	917	4	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	15.369522511198	5996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAACAAAAAACC	371	False	NA	NA	False	NA	NA	NA	57304342	57306322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57304568_57305388_57305563_57305670_57305796_57305929
ENSMUST00000002756.14	chr12	-	1003	8	FSM	ENSMUSG00000002679.15	ENSMUST00000002756.14	1003	8	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_7	64.9976451692753	3172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCATCATGCCTTTCCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	81641732	81620338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_81620735_81621298_81621327_81626343_81626460_81628574_81628684_81629406_81629490_81635756_81635849_81638027_81638188_81641713
ENSMUST00000002790.14	chr2	+	3641	25	FSM	ENSMUSG00000002718.15	ENSMUST00000002790.14	3641	25	0	0	0	0	multi-exon	FALSE	canonical	3	726	junction_12	67.9214722226255	411	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTTTTTATTGTTTTC	NA	False	NA	37	True	CATAAA	-33	NA	166747978	166788309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
ENSMUST00000002805.14	chr2	+	1172	6	FSM	ENSMUSG00000002728.15	ENSMUST00000002805.14	1172	6	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	436.248094551713	6222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTAATCATCCCTGTC	NA	False	NA	31	True	TATAAA	-16	NA	145745160	145758345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_145745283_145750510_145750536_145753592_145753714_145754312_145754449_145757453_145757600_145757723
ENSMUST00000002808.7	chr2	-	1614	8	FSM	ENSMUSG00000002731.7	ENSMUST00000002808.7	1614	8	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_1	7.52953368748825	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTAGCTTTATTCTTTGT	NA	False	NA	35	True	NA	NA	NA	76478359	76460241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_76460913_76463876_76464052_76467138_76467234_76469543_76469662_76470584_76470664_76473566_76473649_76477468_76477639_76478135
ENSMUST00000002809.14	chr2	-	860	4	FSM	ENSMUSG00000002732.15	ENSMUST00000002809.14	860	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	10.2089285540757	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGCAAATCTGACT	NA	False	NA	-13	True	AATAAA	-26	NA	76503414	76493387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_76493697_76496020_76496155_76502040_76502193_76503149
ENSMUST00000002818.9	chr11	+	2541	7	FSM	ENSMUSG00000002741.10	ENSMUST00000002818.9	2541	7	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_4	17.3205080756888	1023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTCTTGTGTTTACTTT	NA	False	NA	19	True	GATAAA	-20	NA	5905692	5917780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_5906005_5909296_5909380_5911187_5911289_5912336_5912442_5912692_5912759_5914560_5914663_5916008
ENSMUST00000002837.11	chr5	-	3800	4	FSM	ENSMUSG00000063406.12	ENSMUST00000002837.11	3800	4	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_1	14.1656862405839	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATAATTGTTACCTACTCC	NA	False	NA	0	True	AATAAA	-31	NA	108280486	108269492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_108272626_108273766_108273951_108277883_108277982_108280101
ENSMUST00000002839.9	chr17	-	2926	15	FSM	ENSMUSG00000059409.10	ENSMUST00000002839.9	2926	15	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_9	37.0099958918988	2243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGAGTCGCCTTGGTGT	1109	False	NA	NA	False	AATAAA	-15	NA	47015928	46993916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46995053_46995186_46995304_46995431_46995505_46995590_46995693_46996227_46996356_46996444_46996616_46996979_46997034_46997188_46997358_46997484_46997616_46997959_46998053_46998175_46998287_46998371_46998572_46998762_46998956_47010994_47011073_47015758
ENSMUST00000002844.14	chr17	+	1031	7	FSM	ENSMUSG00000002767.14	ENSMUST00000002844.14	1031	7	0	0	0	0	multi-exon	FALSE	canonical	3	984	junction_4	70.4430423975443	6631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTACTACCTTTTCACT	NA	False	NA	28	True	AATAAA	-17	NA	46957154	46961058	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959514_46959584_46959696_46959960_46960035_46960809
ENSMUST00000002845.8	chr17	+	859	4	FSM	ENSMUSG00000002768.9	ENSMUST00000002845.8	859	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	390.850639275699	3532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCTGTGCTCCTGAATCC	NA	False	NA	5	True	AATAAA	-30	NA	46992049	46994037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_46992132_46992542_46992824_46992934_46993038_46993644
ENSMUST00000002846.9	chr17	-	1035	6	FSM	ENSMUSG00000002769.10	ENSMUST00000002846.9	1035	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	8.1338797630651	498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCCTGGTGTTTCTT	2979	False	NA	NA	False	AGTAAA	-23	NA	47040094	47036589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_47036898_47036986_47037109_47037194_47037338_47037531_47037643_47038190_47038319_47039871
ENSMUST00000002855.14	chr7	+	1599	5	FSM	ENSMUSG00000002778.15	ENSMUST00000002855.14	1599	5	0	0	0	0	multi-exon	TRUE	canonical	3	208	junction_1	16.5378354085412	3286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCTGTTCCCTGCCCGCT	3944	False	NA	17	True	AATAAA	-21	NA	45522195	45533156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45531177_45532400
ENSMUST00000002881.5	chr12	-	734	5	FSM	ENSMUSG00000002804.5	ENSMUST00000002881.5	734	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	82.3995600716412	799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATAAAGCTTGTGTAAGT	8854	False	NA	-32	True	GGGGCT	-44	NA	112905737	112898374	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_112898671_112901975_112902178_112902414_112902480_112902898_112902943_112905610
ENSMUST00000002885.8	chr13	-	2363	3	FSM	ENSMUSG00000002808.8	ENSMUST00000002885.8	2363	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	5.5	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGAGCCTATTAAGTCTC	NA	False	NA	NA	False	AATAAA	-34	NA	19803974	19775875	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_19777519_19778616_19778826_19803463
ENSMUST00000002902.8	chr9	+	1316	10	FSM	ENSMUSG00000002825.9	ENSMUST00000002902.8	1316	10	0	0	0	0	multi-exon	FALSE	canonical	3	687	junction_5	65.5845510263914	3363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAAGCTCTTGTGTCTGTC	2369	False	NA	42	True	TATAAA	-28	NA	21323132	21331570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920_21331009_21331331
ENSMUST00000002911.10	chr17	+	2264	16	FSM	ENSMUSG00000002833.12	ENSMUST00000002911.10	2264	16	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_6	225.638196136105	2031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAAACAGCTTTTATT	NA	False	NA	NA	False	TATAAA	-14	NA	56386637	56407596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403850_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407347
ENSMUST00000002925.6	chr16	-	1573	7	FSM	ENSMUSG00000002846.10	ENSMUST00000002925.6	1573	7	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_6	22.2666916167525	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTGTCTGGATCGCCT	NA	False	NA	-16	True	AGTAAA	-22	NA	38343025	38318708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38342702
ENSMUST00000002964.14	chr8	-	2986	18	FSM	ENSMUSG00000002885.15	ENSMUST00000002964.14	2986	18	0	0	0	0	multi-exon	FALSE	canonical	2	28	junction_14	43.193056599508	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAAAGCTTTGGAACAATA	NA	False	NA	NA	False	AATAAA	-17	NA	84467955	84449879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84460042_84460196_84460637_84460755_84460924_84460982_84467735
ENSMUST00000003029.14	chr8	-	1790	13	FSM	ENSMUSG00000002949.16	ENSMUST00000003029.14	1790	13	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_5	35.4920765805553	1038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAACGGTTTGAAGTGT	NA	False	NA	-13	True	AATAAA	-22	NA	4325913	4309730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4315277_4316555_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
ENSMUST00000003061.14	chr7	-	2429	15	FSM	ENSMUSG00000002980.15	ENSMUST00000003061.14	2429	15	0	0	0	0	multi-exon	TRUE	canonical	3	510	junction_11	49.5145824737624	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCGCCAGGTTCTCTTCT	3912	False	NA	-5	True	AATAAA	-26	NA	19504472	19490055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19490545_19490632_19490751_19492348_19492494_19492583_19492729_19492884_19493022_19493971_19494114_19494218_19494338_19497964_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760_19500987_19502376_19502499_19504331
ENSMUST00000003066.16	chr7	-	1128	4	FSM	ENSMUSG00000002985.17	ENSMUST00000003066.16	1128	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4936.24555935199	37402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGAGTCTCTGTGAGT	NA	False	NA	-30	True	AATAAA	-14	NA	19432977	19430196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19431029_19431403_19431573_19432112_19432198_19432935
ENSMUST00000003071.10	chr7	-	538	3	FSM	ENSMUSG00000074336.6	ENSMUST00000003071.10	538	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	3.5	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGCATAGCTTCTCTTGA	5934	False	NA	3	True	AATAAA	-27	NA	19415404	19412007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19412238_19412534_19412668_19415229
ENSMUST00000003117.15	chr8	+	2084	12	FSM	ENSMUSG00000003033.16	ENSMUST00000003117.15	2084	12	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_9	40.3802177244139	791	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTCTTCTCTCTGTGT	NA	False	NA	19	True	ATTAAA	-20	NA	72993861	73011229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_72994088_73000482_73000640_73002956_73003025_73003592_73003724_73004524_73004673_73005586_73005714_73006678_73006822_73007052_73007125_73007318_73007478_73009540_73009667_73009950_73010027_73010578
ENSMUST00000003135.14	chr1	-	2095	9	FSM	ENSMUSG00000003051.14	ENSMUST00000003135.14	2095	9	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_7	111.074791807142	823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGAGCTCTCTGTGTAC	NA	False	NA	-6	True	AATAAA	-27	NA	135186306	135181312	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135185025_135185352_135185521_135186086
ENSMUST00000003156.15	chr10	+	931	4	FSM	ENSMUSG00000003072.16	ENSMUST00000003156.15	931	4	0	0	0	0	multi-exon	FALSE	canonical	3	2420	junction_3	40.5983031938802	33886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTTTCTAACTGCAC	4445	False	NA	20	True	ATTAAA	-19	NA	79978148	79981652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_79978441_79979665_79979820_79981052_79981142_79981256
ENSMUST00000003183.12	chr7	-	2072	13	FSM	ENSMUSG00000003099.12	ENSMUST00000003183.12	2072	13	0	0	0	0	multi-exon	FALSE	canonical	3	1050	junction_5	57.0079794609686	1729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCTCGACGTGTGTCCA	NA	False	NA	-3	True	AATAAA	-37	NA	16761841	16738564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
ENSMUST00000003268.11	chr17	-	2073	10	FSM	ENSMUSG00000003200.11	ENSMUST00000003268.11	2073	10	0	0	0	0	multi-exon	FALSE	canonical	3	585	junction_1	54.5914116159513	786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTCCCATCTTCATT	NA	False	NA	-1	True	ATTAAA	-17	NA	56343635	56323749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_56324737_56324843_56324901_56324982_56325108_56325574_56325679_56325803_56325963_56326039_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
ENSMUST00000003290.12	chr7	-	1075	7	FSM	ENSMUSG00000003190.13	ENSMUST00000003290.12	1075	7	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_2	18.8473399243029	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-21	NA	44647003	44640645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44640879_44642167_44642456_44643603_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886
ENSMUST00000003319.6	chr16	+	3090	21	FSM	ENSMUSG00000003234.17	ENSMUST00000003319.6	3090	21	0	0	0	0	multi-exon	TRUE	canonical	3	293	junction_13	17.6705970470723	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACACGTGCAAGAGCATG	NA	False	NA	10	True	AATAAA	-19	NA	20367326	20380129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_20367496_20367715_20367864_20367984_20368065_20368493_20368541_20368753_20368852_20368951_20369075_20369170_20369438_20370223_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371008_20371210_20371303_20371381_20377309_20377355_20377446_20377580_20378040_20378130_20378390_20378483_20378664_20378798_20378932_20379021_20379106
ENSMUST00000003370.14	chr2	+	2092	13	FSM	ENSMUSG00000003283.16	ENSMUST00000109799.8	2092	13	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_9	8.17346655682615	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCAGCTTCTCTGTCTCC	NA	False	NA	19	True	AATAAA	-29	NA	152950387	152993361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_152950675_152966089_152966208_152970182_152970226_152970962_152971063_152971763_152971863_152973140_152973245_152975988_152976139_152976543_152976697_152978617_152978798_152980181_152980259_152986338_152986493_152990866_152990999_152992866
ENSMUST00000003386.7	chr9	+	1288	9	FSM	ENSMUSG00000003299.11	ENSMUST00000003386.7	1288	9	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_5	79.3851371479574	3941	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGGTCACTGCTGTGG	NA	False	NA	26	True	AATAAA	-26	NA	20914033	20920135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919037_20919118_20919196_20919789
ENSMUST00000003416.15	chr17	+	2227	13	FSM	ENSMUSG00000048440.17	ENSMUST00000003416.15	2227	13	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_12	10.7625895273086	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGTCTTGGTTCCAT	NA	False	NA	20	True	NA	NA	NA	32755542	32770771	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_32755630_32755971_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
ENSMUST00000003445.8	chr15	-	734	6	FSM	ENSMUSG00000003355.8	ENSMUST00000003445.8	734	6	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_4	33.5177564881661	6103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTTGTATTTTTCACT	NA	False	NA	NA	False	AATAAA	-15	NA	98626079	98622250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98622484_98624364_98624436_98624780_98624815_98625091_98625180_98625563_98625630_98625837
ENSMUST00000003450.15	chr15	-	3187	17	FSM	ENSMUSG00000003360.16	ENSMUST00000003450.15	3187	17	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	5.44252641243017	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCAGCCCCGAGCTCC	6999	False	NA	-14	True	AATAAA	-15	NA	98560770	98543014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
ENSMUST00000003461.15	chr11	+	4127	23	FSM	ENSMUSG00000020456.18	ENSMUST00000003461.15	4127	23	0	0	0	0	multi-exon	FALSE	canonical	3	535	junction_8	60.360778272973	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCCTGCTGTCGTGTGT	NA	False	NA	14	True	CATAAA	-18	NA	6241632	6306642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_6241694_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
ENSMUST00000003502.4	chr4	+	1053	4	FSM	ENSMUSG00000003411.11	ENSMUST00000003502.4	1053	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	6.34209919681348	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGCTTGTTTCCTATC	NA	False	NA	7	True	ATTAAA	-18	NA	108747486	108798385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_108747733_108781102_108781222_108786598_108786724_108797822
ENSMUST00000003512.9	chr7	-	1770	7	FSM	ENSMUSG00000003420.9	ENSMUST00000003512.9	1770	7	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	11.6583303550151	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACACCTCTTGATTGCTA	765	False	NA	67	True	AATAAA	-26	NA	44753275	44742413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751837_44752096_44752426_44752698_44753063
ENSMUST00000003513.11	chr7	+	1814	9	FSM	ENSMUSG00000003421.14	ENSMUST00000003513.11	1814	9	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_1	63.7582102556212	944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCTTTGTTGTTTTATT	3085	False	NA	25	True	NA	NA	NA	44711879	44727634	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
ENSMUST00000003521.10	chr7	-	661	5	FSM	ENSMUSG00000003429.12	ENSMUST00000003521.10	661	5	0	0	0	0	multi-exon	FALSE	canonical	3	18027	junction_3	5229.01092463957	415456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGGAGTCTCATGTGTC	NA	False	NA	-1	True	AATAAA	-24	NA	44773863	44771802	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44771983_44772252_44772383_44772586_44772663_44772842_44772975_44773720
ENSMUST00000003527.10	chr7	-	3513	30	FSM	ENSMUSG00000003435.10	ENSMUST00000003527.10	3513	30	0	0	0	0	multi-exon	FALSE	canonical	3	628	junction_29	71.450522531579	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTACGAAGAGTTTT	NA	False	NA	-11	True	AATAAA	-18	NA	28038144	28014318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029442_28029455_28030004_28030071_28030794_28030955_28037776_28037861_28038119
ENSMUST00000003529.9	chr7	+	2003	14	FSM	ENSMUSG00000003437.15	ENSMUST00000003529.9	2003	14	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_5	16.9726546514433	1280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTAAAGTCTCTGTTCC	569	False	NA	20	True	AATAAA	-21	NA	28092375	28098813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28092680_28093093_28093124_28094467_28094561_28094842_28094965_28095053_28095121_28095195_28095298_28095376_28095483_28095558_28095628_28095708_28095813_28096034_28096152_28096245_28096375_28097872_28097979_28098083_28098175_28098250
ENSMUST00000003536.9	chr7	-	1281	4	FSM	ENSMUSG00000003444.9	ENSMUST00000003536.9	1281	4	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_2	10.3387082795139	3756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTAGCTCCAAAGCAG	NA	False	NA	NA	False	NA	NA	NA	28092133	28085570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28086450_28090236_28090322_28090514_28090574_28091875
ENSMUST00000003550.11	chr1	-	2901	17	FSM	ENSMUSG00000003458.13	ENSMUST00000003550.11	2901	17	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_8	31.8580224394108	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTGTTTGGTATTCTTC	8996	False	NA	50	True	ATTAAA	-21	NA	171910362	171893579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171908778_171908884_171910167
ENSMUST00000003572.10	chr6	+	2380	17	FSM	ENSMUSG00000029777.11	ENSMUST00000003572.10	2380	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	747.261037786495	1332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATCTGTTGTGTTTCCAT	NA	False	NA	35	True	ATTAAA	-29	NA	55014991	55056485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_55015219_55023398_55023501_55025051_55025155_55027304_55027447_55029160_55029250_55030113_55030191_55032734_55032881_55037893_55038044_55040075_55040239_55042432_55042598_55045045_55045154_55046325_55046472_55050323_55050410_55052366_55052477_55053939_55054034_55054567_55054759_55056204
ENSMUST00000003620.13	chr16	-	2386	14	FSM	ENSMUSG00000003526.13	ENSMUST00000003620.13	2386	14	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_5	13.1900087703135	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTTTCTCTTGGTACCT	7943	False	NA	0	True	AATAAA	-20	NA	17907156	17889588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_17890228_17890313_17890403_17891418_17891518_17894105_17894282_17895307_17895455_17895654_17895748_17897050_17897133_17897775_17897856_17898029_17898147_17898326_17898392_17898789_17898940_17899394_17899430_17902410_17902620_17906751
ENSMUST00000003635.7	chr17	+	1131	2	FSM	ENSMUSG00000003541.7	ENSMUST00000003635.7	1131	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	219	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTCGAAGTGTATCATTC	NA	False	NA	16	True	AATAAA	-29	NA	36132575	36133815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_36132821_36132929
ENSMUST00000003642.7	chr17	-	2322	16	FSM	ENSMUSG00000003546.11	ENSMUST00000003642.7	2322	16	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_15	25.3531501439608	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTTGTGTTCGGAGTC	NA	False	NA	-9	True	AATAAA	-11	NA	46956070	46941556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956006
ENSMUST00000003655.9	chr19	+	1736	11	FSM	ENSMUSG00000003559.9	ENSMUST00000003655.9	1736	11	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_6	16.3612346722367	1212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGGATGTCTGTAGTTT	5974	False	NA	30	True	AATAAA	-40	NA	46695896	46729534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_46695976_46696194_46696239_46696508_46696637_46697406_46697558_46697985_46698123_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
ENSMUST00000003669.8	chr8	+	2323	9	FSM	ENSMUSG00000003573.16	ENSMUST00000003669.8	2323	9	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_8	39.6192819218118	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGTGAGATCTGGCTCCC	NA	False	NA	NA	False	AATAAA	-17	NA	70737895	70747003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70737966_70738043_70738201_70738580_70738713_70742043_70742152_70742701_70742824_70743656_70743814_70743967_70744079_70744166_70744254_70745624
ENSMUST00000003720.5	chr5	-	2996	18	FSM	ENSMUSG00000003623.5	ENSMUST00000003720.5	2996	18	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_6	20.8630399507397	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGTTGAAAACAATGATTGT	NA	False	NA	-11	True	AATAAA	-30	NA	9047324	9016032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_9016973_9018646_9018767_9018869_9018964_9019047_9019127_9019915_9020040_9023585_9023717_9023944_9024053_9024132_9024217_9026007_9026110_9027454_9027581_9028197_9028292_9033688_9033798_9037767_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046548_9047103
ENSMUST00000003754.8	chr8	-	1431	11	FSM	ENSMUSG00000003657.10	ENSMUST00000003754.8	1431	11	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_9	44.1960405466372	1247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCACCCGTTTCTTGTCG	7616	False	NA	-12	True	AATAAA	-22	NA	110894838	110869169	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_110869833_110872283_110872356_110873932_110873987_110874246_110874287_110874674_110874731_110875145_110875224_110875987_110876045_110879261_110879343_110881284_110881375_110883551_110883629_110894675
ENSMUST00000003818.14	chr1	-	2697	6	FSM	ENSMUSG00000003721.15	ENSMUST00000003818.14	2697	6	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_4	17.805617091244	952	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGTCCTTTTTATTC	NA	False	NA	-1	True	ATTAAA	-17	NA	121255753	121232081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255419
ENSMUST00000003857.7	chr7	-	2358	18	FSM	ENSMUSG00000089832.9	ENSMUST00000003857.7	2358	18	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_5	29.8825845289775	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTATAGTCTTGGTTTG	NA	False	NA	-28	True	AATAAA	-17	NA	27055444	27041557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27054872_27054997_27055052_27055295
ENSMUST00000003860.13	chr7	+	2181	15	FSM	ENSMUSG00000003762.14	ENSMUST00000003860.13	2181	15	0	0	0	0	multi-exon	TRUE	canonical	3	74	junction_1	14.7544528041883	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTTTCTCTCTGTGCTA	NA	False	NA	22	True	AATAAA	-22	NA	26932447	26957375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_26932599_26932889_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949711_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
ENSMUST00000003906.13	chr8	+	1826	13	FSM	ENSMUSG00000003808.19	ENSMUST00000003906.13	1826	13	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_9	56.0676055212713	1458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTGTCATTCATTTCA	NA	False	NA	38	True	AATAAA	-38	NA	85583617	85595886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
ENSMUST00000003907.14	chr8	-	2167	11	FSM	ENSMUSG00000003809.15	ENSMUST00000003907.14	2167	11	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_6	21.1293634546808	1821	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATACTTTGGCTTCTCAA	NA	False	NA	-5	True	AATAAA	-9	NA	85620546	85613021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183
ENSMUST00000003910.13	chr8	+	1715	6	FSM	ENSMUSG00000003812.14	ENSMUST00000003910.13	1715	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_4	11.7711511756497	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGACTTGAATTTGTTT	NA	False	NA	18	True	NA	NA	NA	85635188	85638098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314
ENSMUST00000003922.6	chr8	+	685	4	FSM	ENSMUSG00000003824.13	ENSMUST00000003922.6	685	4	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_2	470.355184940062	3805	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTCCTTTGCTCTTTCCC	NA	False	NA	91	True	AAAACA	-4	NA	85598821	85614085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85598883_85599348_85599462_85612563_85612753_85613763
ENSMUST00000003946.9	chr8	-	1658	9	FSM	ENSMUSG00000003848.15	ENSMUST00000003946.9	1658	9	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	34.7902195307819	1315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTTTTTTGTTTTATTT	NA	False	NA	-3	True	AATAAA	-14	NA	108151681	108139120	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_108139816_108142737_108142883_108143625_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369_108151503_108151597
ENSMUST00000003947.9	chr8	-	1553	6	FSM	ENSMUSG00000003849.9	ENSMUST00000003947.9	1553	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_5	9.8264947972306	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGTGGCGCATGCCTTT	NA	False	NA	-2	True	AATAAA	-18	NA	108129838	108114856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_108115757_108117676_108117779_108118753_108118868_108119272_108119404_108119479_108119645_108129697
ENSMUST00000003964.17	chr7	+	3678	16	FSM	ENSMUSG00000003865.17	ENSMUST00000003964.17	3678	16	0	0	0	0	multi-exon	TRUE	canonical	3	89	junction_1	61.1041369757855	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGCTGGACATAAGCTC	1027	False	NA	25	True	AATACA	-21	NA	45084267	45106043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45084595_45085955_45086138_45087525_45087718_45088902_45089089_45089328_45089474_45091846_45091965_45092339_45092461_45092951_45093059_45094055_45094116_45094202_45094282_45097321_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
ENSMUST00000003971.10	chr7	-	735	6	FSM	ENSMUSG00000003872.10	ENSMUST00000003971.10	735	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.93907194296653	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGAGTGTCTTGTGTGTCTG	7942	False	NA	1	True	TTTAAA	-16	NA	45020007	45017314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45017423_45017727_45017892_45018564_45018775_45019338_45019411_45019550_45019670_45019945
ENSMUST00000004057.9	chr16	-	718	5	FSM	ENSMUSG00000003955.9	ENSMUST00000004057.9	718	5	0	0	0	0	multi-exon	FALSE	canonical	3	971	junction_1	40.7982842776507	3202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATAGTATTATCTCTTC	NA	False	NA	80	True	NA	NA	NA	35891885	35864130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_35864462_35866748_35866858_35870211_35870321_35872655_35872779_35891839
ENSMUST00000004072.10	chr15	+	851	6	FSM	ENSMUSG00000003970.10	ENSMUST00000004072.10	851	6	0	0	0	0	multi-exon	FALSE	canonical	3	5295	junction_1	2369.37927736359	280618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	False	NA	34	True	AATAAA	-18	NA	76788277	76790514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
ENSMUST00000004134.11	chr3	+	945	8	FSM	ENSMUSG00000004032.11	ENSMUST00000004134.11	945	8	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	3.52252228741084	405	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTCTAGATGGATTTC	NA	False	NA	11	True	AATAAA	-16	NA	107803136	107806002	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_107803315_107803613_107803690_107803941_107804007_107804603_107804686_107804777_107804879_107805282_107805379_107805481_107805593_107805766
ENSMUST00000004136.10	chr3	-	1311	8	FSM	ENSMUSG00000004038.10	ENSMUST00000004136.10	1311	8	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_5	50.6947648547014	1071	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876599	107871011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875081_107875164_107875451_107875517_107876078_107876155_107876420
ENSMUST00000004137.11	chr3	-	1377	8	FSM	ENSMUSG00000004035.13	ENSMUST00000004137.11	1377	8	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_6	2.49897938350513	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTTTTTCTTTGGTCGG	NA	False	NA	-7	True	NA	NA	NA	107839133	107833649	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_107834297_107836185_107836297_107836378_107836475_107837589_107837691_107837788_107837871_107838143_107838209_107838630_107838707_107838934
ENSMUST00000004140.11	chr3	-	1289	8	FSM	ENSMUSG00000058135.13	ENSMUST00000004140.11	1289	8	0	0	0	0	multi-exon	FALSE	canonical	3	592	junction_3	56.1666616201374	3685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGAGTTGTGTCTTTTTCT	6583	False	NA	-4	True	AATAAA	-18	NA	107925289	107919570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_107920095_107922068_107922180_107922260_107922357_107923643_107923745_107923834_107923917_107924199_107924265_107924666_107924743_107925055
ENSMUST00000004172.15	chr16	+	1730	6	FSM	ENSMUSG00000004070.16	ENSMUST00000004172.15	1730	6	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_2	14.4277510374971	2665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACCTGTGATTTTTCCT	NA	False	NA	9	True	CATAAA	-17	NA	4544226	4584606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_4544336_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
ENSMUST00000004200.9	chr9	+	1111	7	FSM	ENSMUSG00000004096.10	ENSMUST00000004200.9	1111	7	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_1	58.5484130157826	13798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATACAGCTTATAAAAAG	NA	False	NA	3	True	AATAAA	-27	NA	14411912	14421873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_14412078_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
ENSMUST00000004203.6	chr9	+	1670	11	FSM	ENSMUSG00000004100.13	ENSMUST00000004203.6	1670	11	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_9	65.2172523186925	7814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	13	True	AATAAA	-14	NA	20799470	20803474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_20799614_20799702_20799874_20800633_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
ENSMUST00000004206.10	chr9	-	1101	11	FSM	ENSMUSG00000070319.7	ENSMUST00000004206.10	1101	11	0	0	0	0	multi-exon	FALSE	canonical	3	2112	junction_10	212.212370044727	17117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCCTGCTTATTTTCT	5139	False	NA	-1	True	AGTAAA	-16	NA	20809919	20805644	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_20805739_20805928_20806036_20806128_20806266_20806384_20806493_20807123_20807314_20807411_20807517_20809002_20809063_20809183_20809273_20809379_20809464_20809673_20809721_20809839
ENSMUST00000004327.11	chrX	-	2652	13	FSM	ENSMUSG00000031400.11	ENSMUST00000004327.11	2652	13	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_8	19.8990507869653	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTCTCCTTGTTCTTTTC	NA	False	NA	-6	True	ATTAAA	-18	NA	73472800	73453088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_73453904_73454002_73454096_73454188_73454266_73454362_73454599_73454863_73455051_73455170_73455265_73455571_73455698_73455924_73456084_73457469_73457688_73458513_73458623_73458721_73458760_73471657_73471786_73472428
ENSMUST00000004375.16	chr6	+	1318	10	FSM	ENSMUSG00000004264.18	ENSMUST00000004375.16	1318	10	0	0	0	0	multi-exon	FALSE	canonical	1	924	junction_9	595.782978965236	12340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692994_124693387_124693394_124693568
ENSMUST00000004377.15	chr6	-	2308	15	FSM	ENSMUSG00000004266.16	ENSMUST00000004377.15	2308	15	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_14	38.4405185889545	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGTGCCCCTTGTATC	9009	False	NA	0	True	AATAAA	-28	NA	124715588	124697669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124715461
ENSMUST00000004379.8	chr6	-	1034	6	FSM	ENSMUSG00000004268.12	ENSMUST00000004379.8	1034	6	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_5	105.298433036774	9390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTTCAGACCTGATT	NA	False	NA	-14	True	TATAAA	-19	NA	124689141	124681343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124681622_124681901_124682052_124682120_124682180_124682477_124682620_124682703_124682806_124688838
ENSMUST00000004381.14	chr6	+	2281	13	FSM	ENSMUSG00000004270.14	ENSMUST00000004381.14	2281	13	0	0	0	0	multi-exon	FALSE	canonical	3	738	junction_2	58.4776785524946	985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTATACAGTGTTGTCTC	NA	False	NA	NA	False	AATAAA	-25	NA	124639989	124681381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
ENSMUST00000004396.13	chr6	+	703	2	FSM	ENSMUSG00000004285.13	ENSMUST00000004396.13	703	2	0	0	0	0	multi-exon	FALSE	canonical	3	1924	junction_1	0	22465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTGGTATGGATACG	NA	False	NA	37	True	ATTAAA	-19	NA	29467716	29470511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_29467974_29470065
ENSMUST00000004453.9	chr13	+	1340	5	FSM	ENSMUSG00000004341.9	ENSMUST00000004453.9	1340	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	5.71729831301464	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGACTCTGAGTGATGT	925	False	NA	NA	False	NA	NA	NA	21496294	21503794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_21496515_21497817_21497972_21501154_21501273_21501738_21501839_21503046
ENSMUST00000004473.15	chr10	-	1763	6	FSM	ENSMUSG00000004359.17	ENSMUST00000004473.15	1763	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	182.911563330479	1414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	88518885	88510633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88516340_88516437_88518836
ENSMUST00000004507.11	chr11	-	1956	14	FSM	ENSMUSG00000004393.11	ENSMUST00000004507.11	1956	14	0	0	0	0	multi-exon	FALSE	canonical	3	937	junction_7	74.9654752883426	1994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGTGTTGTCTGGCTCTG	4489	False	NA	-2	True	NA	NA	NA	6217772	6208918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217659
ENSMUST00000004508.13	chr11	-	2003	5	FSM	ENSMUSG00000004394.13	ENSMUST00000004508.13	2003	5	0	0	0	0	multi-exon	FALSE	canonical	3	418	junction_4	49.7663289785373	1572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATTCTCCCTTTGTTTT	5338	False	NA	NA	False	ATTAAA	-24	NA	6224870	6220368	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397_6224499_6224673
ENSMUST00000004554.14	chr7	+	761	6	FSM	ENSMUSG00000012848.16	ENSMUST00000004554.14	761	6	0	0	0	0	multi-exon	FALSE	canonical	3	14799	junction_5	1601.25238485381	204979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	38	True	AATAAA	-24	NA	12656216	12660613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
ENSMUST00000004565.15	chr1	-	2289	5	FSM	ENSMUSG00000004451.15	ENSMUST00000004565.15	2289	5	0	0	0	0	multi-exon	FALSE	canonical	3	967	junction_4	66.8169140263152	623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGCCCTTTTTCCTGCAT	NA	False	NA	-4	True	AATAAA	-21	NA	119432524	119398034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119432306
ENSMUST00000004574.14	chr16	+	1927	10	FSM	ENSMUSG00000004460.18	ENSMUST00000004574.14	1927	10	0	0	0	0	multi-exon	FALSE	canonical	3	939	junction_3	70.1998909640038	2819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGTATCTGTCCAAG	NA	False	NA	30	True	AATAAA	-34	NA	22676594	22691138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22676860_22681291_22681449_22684203_22684302_22685669_22685803_22687460_22687604_22687870_22687954_22688165_22688224_22689320_22689433_22689689_22689850_22690420
ENSMUST00000004614.15	chr7	+	3591	8	FSM	ENSMUSG00000058638.15	ENSMUST00000004614.15	3591	8	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_1	17.0617127163813	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCTGGACTATAGCGTGT	NA	False	NA	27	True	NA	NA	NA	12568687	12584504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_12569092_12569373_12569455_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
ENSMUST00000004646.13	chr5	-	3491	11	FSM	ENSMUSG00000004530.13	ENSMUST00000004646.13	3491	11	0	0	0	0	multi-exon	FALSE	canonical	3	905	junction_1	46.3810306051946	1106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTGTGCTGTGCTTCTTT	NA	False	NA	NA	False	GATAAA	-15	NA	114046819	113980496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_113982530_113983221_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113987589_113987710_113988711_113988894_113990231_113990362_114003699_114003823_114020018_114020219_114046671
ENSMUST00000004729.5	chr7	+	893	6	FSM	ENSMUSG00000004610.5	ENSMUST00000004729.5	893	6	0	0	0	0	multi-exon	FALSE	canonical	3	1745	junction_1	117.194539121923	23900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGGATGTCCTTGTTT	1908	False	NA	52	True	AATAAA	-35	NA	43093506	43107224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941_43104005_43105902_43106062_43106993
ENSMUST00000004745.9	chr8	+	1847	19	FSM	ENSMUSG00000004626.15	ENSMUST00000004745.9	1847	19	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_17	74.555886735479	998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTCACCTCATTTTC	4602	False	NA	16	True	AATAAA	-22	NA	3681169	3692795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691894_3692056_3692645
ENSMUST00000004756.14	chr8	+	2244	9	FSM	ENSMUSG00000004637.16	ENSMUST00000004756.14	2244	9	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_8	27.9013328534678	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTGTCTGAAGTGTAT	NA	False	NA	12	True	AATAAA	-15	NA	115166394	116079447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115406526_115406616_115432940_115433127_115438726_115438992_116078376
ENSMUST00000004786.10	chr10	-	1148	7	FSM	ENSMUSG00000004667.19	ENSMUST00000004786.10	1148	7	0	0	0	0	multi-exon	FALSE	canonical	3	2552	junction_2	153.800375667797	11114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5515	False	NA	-19	True	ATTAAA	-19	NA	79875629	79871782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416
ENSMUST00000004868.6	chr11	-	1411	4	FSM	ENSMUSG00000004748.6	ENSMUST00000004868.6	1411	4	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_3	5.18544972870135	918	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTTCATTTCCTCTT	NA	False	NA	1	True	AATAAA	-17	NA	4045445	4041479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_4042300_4043800_4044034_4044388_4044517_4045215
ENSMUST00000004910.12	chr12	+	1605	8	FSM	ENSMUSG00000004788.12	ENSMUST00000004910.12	1605	8	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_7	13.1661284657074	1132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGGAAAGGGCCCCAAAC	NA	False	NA	NA	False	AATAAA	-21	NA	85266254	85273402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_85266499_85266595_85266717_85266870_85267020_85268250_85268415_85269517_85269614_85270154_85270293_85271328_85271396_85272776
ENSMUST00000004955.14	chr11	-	1837	12	FSM	ENSMUSG00000020528.15	ENSMUST00000004955.14	1837	12	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_11	44.7137821487915	798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	242	False	NA	-7	True	AATAAA	-22	NA	61652888	61620479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652779
ENSMUST00000004965.8	chr16	-	1872	6	FSM	ENSMUSG00000004843.8	ENSMUST00000004965.8	1872	6	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_5	16.0573970493352	701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGCCTAACGCGCATCA	NA	False	NA	-8	True	AATAAA	-19	NA	65359612	65336013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_65337137_65337305_65337413_65342162_65342266_65343734_65343930_65347848_65347941_65359360
ENSMUST00000005003.12	chr1	-	3510	14	FSM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	0	0	0	0	multi-exon	FALSE	canonical	3	1956	junction_6	154.844109428974	1764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCTGTTAGAGCCTCA	NA	False	NA	-50	True	AATAAA	-33	NA	181669944	181642899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
ENSMUST00000005015.10	chr3	-	2099	7	FSM	ENSMUSG00000004895.10	ENSMUST00000005015.10	2099	7	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_5	35.6401770789964	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGTGTCTGGATCTCAGA	2299	False	NA	1	True	AATAAA	-27	NA	87792915	87766209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_87766654_87767452_87767519_87769437_87769582_87774621_87774718_87776889_87777457_87779516_87779565_87792181
ENSMUST00000005019.6	chr3	+	931	4	FSM	ENSMUSG00000004885.6	ENSMUST00000005019.6	931	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	3.29983164553722	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCTGTGGCTCCCTGAG	8831	False	NA	8	True	ATTAAA	-19	NA	87855972	87860683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_87856218_87859421_87859601_87859784_87859902_87860293
ENSMUST00000005041.15	chr7	+	2183	12	FSM	ENSMUSG00000030435.17	ENSMUST00000005041.15	2183	12	0	0	0	0	multi-exon	FALSE	canonical	3	1559	junction_7	130.155406157663	3880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATCCTCATCTGTGTCCA	72	False	NA	33	True	ATTAAA	-23	NA	5065141	5082937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180
ENSMUST00000005051.6	chr7	+	1766	8	FSM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	0	0	0	0	multi-exon	FALSE	canonical	2	26	junction_1	2898.88755580904	21289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	18	True	AATAAA	-14	NA	46496554	46505050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_46496813_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
ENSMUST00000005053.14	chr17	-	948	4	FSM	ENSMUSG00000004945.16	ENSMUST00000005053.14	948	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	16.0485374896143	8620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGGGGGCGTGTGTGTCTG	3468	False	NA	-8	True	NA	NA	NA	5490518	5461144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_5461743_5483716_5483855_5489806_5489908_5490407
ENSMUST00000005066.9	chr9	-	2436	11	FSM	ENSMUSG00000004936.9	ENSMUST00000005066.9	2436	11	0	0	0	0	multi-exon	TRUE	canonical	3	469	junction_6	51.6454257412987	775	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTTTGTGGCACACCTT	NA	False	NA	-13	True	AATAAA	-38	NA	64160913	64093051	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_64094081_64094572_64094619_64094958_64095021_64098548_64098614_64098734_64098937_64100983_64101109_64111712_64111765_64112392_64112471_64119865_64120013_64121680_64121892_64160494
ENSMUST00000005073.13	chr5	+	1323	8	FSM	ENSMUSG00000004948.13	ENSMUST00000005073.13	1323	8	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_4	3.97953950776689	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGTGTGGTTTAATG	NA	False	NA	NA	False	AATAAA	-13	NA	136008952	136017478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_136009297_136011492_136011612_136013015_136013120_136013201_136013386_136014398_136014517_136016108_136016201_136016325_136016463_136017253
ENSMUST00000005120.12	chr8	-	1441	9	FSM	ENSMUSG00000004994.13	ENSMUST00000005120.12	1441	9	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	76.6823806359714	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGCCTTGTTTCTAAACT	NA	False	NA	-22	True	ATTAAA	-15	NA	84996976	84984929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84985556_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
ENSMUST00000005185.8	chr10	+	603	3	FSM	ENSMUSG00000005054.8	ENSMUST00000005185.8	603	3	0	0	0	0	multi-exon	TRUE	canonical	3	3631	junction_2	117.5	42548	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTGTGTCCTTAGTTTT	NA	False	NA	23	True	AATATA	-18	NA	78261502	78263456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_78261692_78262760_78262863_78263144
ENSMUST00000005292.15	chr8	+	1500	6	FSM	ENSMUSG00000005161.16	ENSMUST00000005292.15	1500	6	0	0	0	0	multi-exon	FALSE	canonical	3	3496	junction_3	236.69169820676	41878	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTCTAGGCTCTGACCC	NA	False	NA	NA	False	AATAAA	-37	NA	85696239	85701463	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
ENSMUST00000005336.9	chr11	-	2313	11	FSM	ENSMUSG00000005204.13	ENSMUST00000005336.9	2313	11	0	0	0	0	multi-exon	FALSE	canonical	3	762	junction_10	82.7371742326265	2148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	8530	False	NA	-5	True	AATAAA	-17	NA	69572672	69563940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572488
ENSMUST00000005365.15	chr2	-	1352	7	FSM	ENSMUSG00000005233.17	ENSMUST00000005365.15	1352	7	0	0	0	0	multi-exon	FALSE	canonical	3	811	junction_6	34.6121365997536	4661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	-10	True	NA	NA	NA	69036538	69024238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036407
ENSMUST00000005394.13	chr16	+	1996	12	FSM	ENSMUSG00000005262.14	ENSMUST00000005394.13	1996	12	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_10	35.0072011482124	3732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGATATGGTATGTTGT	NA	False	NA	10	True	AATAAA	-20	NA	18631043	18654011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18631168_18633579_18633713_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
ENSMUST00000005487.12	chr15	-	1298	4	FSM	ENSMUSG00000005354.17	ENSMUST00000005487.12	1298	4	0	0	0	0	multi-exon	FALSE	canonical	3	1083	junction_2	92.120693778446	4702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGCTGTTCTGTGGGC	14	True	NA	-5	True	AATAAA	-19	NA	77813206	77799246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_77800058_77808742_77808867_77811891_77812155_77813106
ENSMUST00000005503.5	chr17	+	4251	10	FSM	ENSMUSG00000005370.5	ENSMUST00000005503.5	4251	10	0	0	0	0	multi-exon	FALSE	canonical	3	2207	junction_2	252.867310151411	1160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTTTCCATTTTCTTTC	NA	False	NA	31	True	AATAAA	-20	NA	88282489	88298320	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_88282834_88287618_88287819_88290872_88291043_88291873_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
ENSMUST00000005548.8	chr8	+	1569	5	FSM	ENSMUSG00000005413.9	ENSMUST00000005548.8	1569	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	104.358456772798	1318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGAAGTGCATTCATGTC	NA	False	NA	10	True	AATAAA	-19	NA	75820248	75827217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_75820401_75822483_75822605_75823477_75823970_75825393_75825494_75826513
ENSMUST00000005583.12	chr7	-	901	6	FSM	ENSMUSG00000005447.13	ENSMUST00000005583.12	901	6	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_5	66.0714764478591	3868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTTCTGCTTTATG	8499	False	NA	-2	True	ATTAAA	-15	NA	24997411	24994473	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796_24996896_24997267
ENSMUST00000005607.9	chr8	+	1788	4	FSM	ENSMUSG00000005470.9	ENSMUST00000005607.9	1788	4	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_2	3.39934634239519	1778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTGCTTTTTTCTCTC	5716	False	NA	23	True	AATAAA	-16	NA	84682135	84696826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_84682567_84691659_84691776_84694462_84694640_84695762
ENSMUST00000005647.4	chr2	-	1046	7	FSM	ENSMUSG00000005510.10	ENSMUST00000005647.4	1046	7	0	0	0	0	multi-exon	FALSE	canonical	3	1877	junction_6	40.2105569333339	9784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	-11	True	AATAAA	-16	NA	90735171	90724979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90732857_90733190_90733289_90734766_90734833_90734927
ENSMUST00000005711.6	chr7	-	949	6	FSM	ENSMUSG00000033916.6	ENSMUST00000005711.6	949	6	0	0	0	0	multi-exon	FALSE	canonical	3	2610	junction_5	213.695671458268	17449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	6935	False	NA	-11	True	AATAAA	-17	NA	12768734	12765940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768561
ENSMUST00000005798.9	chr12	-	1928	14	FSM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	0	0	0	0	multi-exon	FALSE	canonical	3	824	junction_2	126.191832929968	3174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTGAAGGTCTTTTCT	NA	False	NA	-10	True	AATAAA	-20	NA	54842488	54793133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_54793845_54798566_54798653_54798725_54798886_54801074_54801162_54803820_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
ENSMUST00000005810.9	chr6	+	2085	8	Antisense	novelGene_ENSMUSG00000108053.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6431	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCCCGCGCGCCCATTGG	5277	False	NA	NA	False	NA	NA	NA	83282672	83294588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr6_+_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
ENSMUST00000005826.9	chr10	+	2926	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	0	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_9	132.722869167299	3975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGCTTGCTCTTACGTA	NA	False	NA	18	True	AATAAA	-18	NA	128173602	128198348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
ENSMUST00000005830.15	chr3	+	1467	7	FSM	ENSMUSG00000005687.15	ENSMUST00000005830.15	1467	7	0	0	0	0	multi-exon	FALSE	canonical	3	3472	junction_4	166.601987449797	10389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAATATGTT	4929	False	NA	NA	False	NA	NA	NA	103078970	103086468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
ENSMUST00000005862.9	chr16	-	2247	7	FSM	ENSMUSG00000005718.9	ENSMUST00000005862.9	2247	7	0	0	0	0	multi-exon	TRUE	canonical	3	103	junction_5	11.6010057035299	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTAGTTATTGAGGATG	NA	False	NA	0	True	AATAAA	-22	NA	4377718	4362524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_4363612_4365118_4365275_4367194_4367336_4369093_4369265_4369609_4369709_4369798_4369965_4377291
ENSMUST00000005964.7	chr3	+	1604	9	FSM	ENSMUSG00000028138.9	ENSMUST00000005964.7	1604	9	0	0	0	0	multi-exon	FALSE	canonical	3	1845	junction_1	151.305103598656	29093	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAAGTATTCAGAAAACTT	4924	False	NA	NA	False	AATAAA	-18	NA	138148853	138161260	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
ENSMUST00000006027.7	chr18	-	2852	5	FSM	ENSMUSG00000005873.7	ENSMUST00000006027.7	2852	5	0	0	0	0	multi-exon	FALSE	canonical	3	477	junction_1	38.3495436739474	4827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTTAAAATGTTGTTTT	5561	False	NA	-7	True	AATAAA	-27	NA	34506422	34477937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_34480222_34482687_34482857_34490144_34490284_34505457_34505552_34506256
ENSMUST00000006029.11	chr15	+	1527	13	FSM	ENSMUSG00000078954.10	ENSMUST00000006029.11	1527	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	73.837800843019	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTTTTGTGCTTCTG	NA	False	NA	12	True	ATTAAA	-19	NA	84604252	84656408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_84604309_84614744_84614755_84617098_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
ENSMUST00000006035.13	chr2	+	1377	13	FSM	ENSMUSG00000005881.14	ENSMUST00000006035.13	1377	13	0	0	0	0	multi-exon	FALSE	canonical	3	758	junction_4	74.7846445171437	3341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTCTCAGTGTGATT	NA	False	NA	16	True	AATAAA	-19	NA	155849964	155860199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_155850149_155850284_155850356_155850483_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
ENSMUST00000006036.13	chr2	-	808	7	FSM	ENSMUSG00000005882.19	ENSMUST00000006036.13	808	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	160.859583350062	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGATCTGGTGGGGTTA	NA	False	NA	9	True	NA	NA	NA	155771964	155690159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155752276_155752385_155753660_155753757_155763554_155763648_155771932
ENSMUST00000006046.5	chr6	-	1384	3	FSM	ENSMUSG00000005892.5	ENSMUST00000006046.5	1384	3	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	3.5	363	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGCTTTGCTCTTCTG	NA	False	NA	-13	True	AATAAA	-15	NA	92221631	92219041	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_92220107_92220652_92220869_92221528
ENSMUST00000006123.11	chr3	-	2631	13	FSM	ENSMUSG00000005968.15	ENSMUST00000006123.11	2631	13	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_11	22.9474036294596	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCCCGTGGGTCTTTTA	6441	False	NA	-5	True	AATAAA	-16	NA	94566178	94520063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94546701_94546777_94566031
ENSMUST00000006137.9	chr16	-	2320	18	FSM	ENSMUSG00000005981.12	ENSMUST00000006137.9	2320	18	0	0	0	0	multi-exon	TRUE	canonical	3	963	junction_15	112.803285922348	1535	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGACGTTTTCTCTGTTCT	NA	False	NA	-3	True	ATTAAA	-22	NA	3895691	3857834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
ENSMUST00000006178.5	chr7	+	1630	12	FSM	ENSMUSG00000006021.6	ENSMUST00000006178.5	1630	12	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_5	5.62609034427847	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTTTGTCTGGCAAGCA	NA	False	NA	32	True	NA	NA	NA	15853819	15861441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_15854107_15854414_15854498_15854636_15854722_15854794_15854850_15856959_15857036_15857124_15857199_15857696_15857807_15857879_15857958_15858641_15858718_15859637_15859774_15859861_15860033_15861042
ENSMUST00000006181.7	chr7	+	2517	11	FSM	ENSMUSG00000006024.14	ENSMUST00000006181.7	2517	11	0	0	0	0	multi-exon	TRUE	canonical	3	1130	junction_8	65.9754499795189	3042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGCACATCTCATTCAT	NA	False	NA	2	True	AATAAA	-17	NA	15832382	15851900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508_15846556_15847036_15847115_15847274_15847331_15847400_15847486_15848045_15848151_15849127_15849197_15849524_15849576_15850388
ENSMUST00000006209.5	chr18	-	695	5	FSM	ENSMUSG00000006050.13	ENSMUST00000006209.5	695	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_2	590.993443280042	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGACTTCCTATGCCTT	NA	False	NA	NA	False	NA	NA	NA	36803338	36800481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_36800713_36800843_36800947_36801704_36801902_36803056_36803183_36803300
ENSMUST00000006217.10	chr11	+	1004	8	FSM	ENSMUSG00000006058.11	ENSMUST00000006217.10	1004	8	0	0	0	0	multi-exon	FALSE	canonical	3	665	junction_5	23.859281341282	4690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTTCCCCCAGTAT	3197	False	NA	21	True	AATAAA	-43	NA	95925710	95938256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95932450_95932556_95934229_95934303_95935986_95936129_95937105_95937181_95938020
ENSMUST00000006254.6	chr7	-	1416	6	FSM	ENSMUSG00000006095.13	ENSMUST00000006254.6	1416	6	0	0	0	0	multi-exon	FALSE	canonical	3	839	junction_4	26.4529771481397	8950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAAGTCTCTTGATTCC	NA	False	NA	-5	True	NA	NA	NA	29931697	29923555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_29923773_29923897_29923971_29926268_29926461_29927028_29927126_29930550_29930695_29931004
ENSMUST00000006286.9	chr11	+	2679	12	FSM	ENSMUSG00000006127.10	ENSMUST00000006286.9	2679	12	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_6	22.5527847321246	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTGACTCCTTTGATGGG	5439	False	NA	27	True	TATAAA	-18	NA	75521813	75539697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_75522024_75523894_75524003_75524288_75524398_75527769_75527887_75528235_75528412_75528970_75529083_75530281_75530392_75536253_75536444_75537611_75537750_75538018_75538103_75538227_75538333_75538477
ENSMUST00000006353.14	chr13	-	2629	16	FSM	ENSMUSG00000006191.18	ENSMUST00000006353.14	2629	16	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	17.6728291138937	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGTTTATTGGACTTT	NA	False	NA	NA	False	AATAAA	-23	NA	30039657	29509283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_29510212_29538612_29538778_29541482_29541567_29627990_29628054_29658511_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
ENSMUST00000006362.4	chrX	+	1010	4	FSM	ENSMUSG00000006200.4	ENSMUST00000006362.4	1010	4	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	47.588514020367	2447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGCTCCATTGTCTTGG	NA	False	NA	14	True	AATAAA	-18	NA	36915786	36918734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_36916057_36916242_36916703_36917291_36917338_36918500
ENSMUST00000006377.13	chr4	+	2722	16	FSM	ENSMUSG00000006215.13	ENSMUST00000006377.13	2722	16	0	0	0	0	multi-exon	TRUE	canonical	3	129	junction_3	19.5436832648187	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCCTGTGGTCCCTGTG	NA	False	NA	5	True	AATAAA	-15	NA	141171964	141194536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
ENSMUST00000006435.8	chr8	+	2825	14	FSM	ENSMUSG00000006273.15	ENSMUST00000006435.8	2825	14	0	0	0	0	multi-exon	TRUE	canonical	3	1214	junction_12	88.1479391228044	1578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAAATGACTCTGTGTTT	NA	False	NA	18	True	AATAAA	-22	NA	69541297	69566363	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_69541581_69548871_69548928_69554016_69554116_69554587_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081
ENSMUST00000006451.8	chr14	-	1842	10	FSM	ENSMUSG00000006288.9	ENSMUST00000006451.8	1842	10	0	0	0	0	multi-exon	FALSE	canonical	3	788	junction_6	38.5313724991294	537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTATAGTTCTGTCTCTTT	NA	False	NA	-6	True	ATTAAA	-21	NA	51022976	51002871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_51003480_51004599_51004745_51009572_51009788_51009930_51010078_51010733_51010791_51012747_51012840_51014718_51014870_51015213_51015426_51018931_51019065_51022894
ENSMUST00000006452.13	chr14	-	1308	11	FSM	ENSMUSG00000006289.15	ENSMUST00000006452.13	1308	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	238.07706735425	2072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTTGTGTTTTTCAGTT	NA	False	NA	-1	True	AATAAA	-24	NA	51162287	51153138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154688_51154768_51154839_51154961_51155292_51155389_51157072_51157249_51157386_51157507_51162120
ENSMUST00000006462.14	chr1	-	1817	11	FSM	ENSMUSG00000006299.14	ENSMUST00000006462.14	1817	11	0	0	0	0	multi-exon	FALSE	canonical	3	1233	junction_8	50.6802722960325	3438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGTGTGCATTTTGTG	NA	False	NA	1	True	AATAAA	-19	NA	74323897	74318998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323201_74323661
ENSMUST00000006467.14	chr1	+	1404	10	FSM	ENSMUSG00000006304.15	ENSMUST00000006467.14	1404	10	0	0	0	0	multi-exon	FALSE	canonical	3	1867	junction_3	197.32307280632	1334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAATTC	7848	False	NA	17	True	NA	NA	NA	74275675	74307146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
ENSMUST00000006478.10	chr7	-	870	7	FSM	ENSMUSG00000006315.10	ENSMUST00000006478.10	870	7	0	0	0	0	multi-exon	FALSE	canonical	3	739	junction_6	21.1850314032233	6484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTTTGTTATGTCCATCT	9257	False	NA	-16	True	AGTAAA	-14	NA	30428965	30427129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428142_30428626_30428697_30428768
ENSMUST00000006496.15	chr7	+	751	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	0	0	0	0	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	139503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1264	False	NA	3	True	AATAAA	-18	NA	3706991	3709896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
ENSMUST00000006523.12	chr12	+	445	5	FSM	ENSMUSG00000006360.12	ENSMUST00000006523.12	445	5	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_4	13.838352503098	4400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCCTGTGTTTTTGTCTG	NA	False	NA	13	True	AATAAA	-13	NA	113115631	113117497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_113115774_113116900_113116996_113117074_113117133_113117237_113117285_113117394
ENSMUST00000006565.13	chr4	-	1793	10	FSM	ENSMUSG00000006398.16	ENSMUST00000006565.13	1793	10	0	0	0	0	multi-exon	FALSE	canonical	3	1043	junction_4	200.755117703013	3055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCCAGCATCCTTCCTAC	NA	False	NA	-11	True	AATAAA	-17	NA	118294549	118290097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_118290339_118290677_118290796_118291947_118292074_118292669_118292899_118292973_118293069_118293165_118293363_118293456_118293586_118293706_118293804_118293890_118294040_118294137
ENSMUST00000006611.9	chr4	+	1338	7	FSM	ENSMUSG00000006442.11	ENSMUST00000006611.9	1338	7	0	0	0	0	multi-exon	FALSE	canonical	3	3072	junction_6	112.657297440808	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCATTTTTGTTCCTA	8716	False	NA	28	True	AATACA	-36	NA	148675959	148679076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_148676244_148676500_148676622_148676938_148677032_148677744_148677899_148678224_148678455_148678539_148678663_148678743
ENSMUST00000006632.8	chr19	+	2558	3	FSM	ENSMUSG00000006463.14	ENSMUST00000006632.8	2558	3	0	0	0	0	multi-exon	TRUE	canonical	3	97	junction_1	34	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTCTTTTTGTTTGTTT	NA	False	NA	22	True	NA	NA	NA	4928699	4935425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4929058_4930148_4930427_4933503
ENSMUST00000006692.6	chr8	-	1756	10	FSM	ENSMUSG00000006517.6	ENSMUST00000006692.6	1756	10	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_4	22.2211110833319	415	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGTGTGGGCTGTGCTT	NA	False	NA	-8	True	AATAAA	-17	NA	123170161	123160339	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_123160915_123161542_123161652_123163212_123163329_123163748_123163968_123164153_123164229_123164565_123164766_123166115_123166263_123166376_123166492_123166920_123166992_123170032
ENSMUST00000006760.3	chr8	+	2189	10	FSM	ENSMUSG00000006585.4	ENSMUST00000006760.3	2189	10	0	0	0	0	multi-exon	FALSE	canonical	3	858	junction_2	66.8792905627208	573	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGAACCTGTCACCGTA	2586	False	NA	27	True	AATAAA	-36	NA	123294753	123299867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_123295011_123295825_123295985_123296062_123296215_123296642_123296841_123296932_123297079_123297179_123297278_123297979_123298169_123298434_123298588_123298675_123298878_123299232
ENSMUST00000006762.7	chr8	-	1628	3	FSM	ENSMUSG00000006587.7	ENSMUST00000006762.7	1628	3	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_2	1	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCCTTGACGTCTCGAG	NA	False	NA	NA	False	AATAAA	-27	NA	123187472	123180946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_123181774_123182861_123183468_123187277
ENSMUST00000006764.9	chr8	-	849	5	FSM	ENSMUSG00000006589.9	ENSMUST00000006764.9	849	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	617.095414016342	25270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGCTTCTCCTCAGTTT	NA	False	NA	-7	True	AATAAA	-15	NA	123303629	123301375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123303253_123303361_123303491
ENSMUST00000006774.11	chr7	+	2736	15	FSM	ENSMUSG00000006599.14	ENSMUST00000006774.11	2736	15	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_5	47.1406925910002	576	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCTCTCTTGGAGTCTT	4706	False	NA	4	True	AATAAA	-15	NA	46445526	46473224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_46445713_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
ENSMUST00000006856.3	chrX	-	5346	37	FSM	ENSMUSG00000006678.7	ENSMUST00000006856.3	5346	37	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_20	43.7489682418023	1404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTACTGTGTTTTGTTTTG	4277	False	NA	-2	True	AATAAA	-19	NA	92675761	92348372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_92349423_92419196_92419291_92464172_92464290_92504974_92505107_92506899_92507079_92517918_92518094_92524084_92524217_92531700_92531834_92534348_92534555_92536324_92536418_92537154_92537188_92604973_92605097_92605475_92605626_92616713_92616839_92619384_92619485_92621102_92621223_92621682_92621813_92624327_92624504_92625623_92625741_92628191_92628282_92629449_92629512_92630603_92630689_92635011_92635167_92637424_92637564_92638379_92638455_92639720_92639838_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
ENSMUST00000006898.10	chr13	-	1127	7	FSM	ENSMUSG00000006715.12	ENSMUST00000006898.10	1127	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	603.044060487199	12164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCGTGGAGAATTAAGTGT	NA	False	NA	-8	True	AATAAA	-26	NA	24945844	24935827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945569
ENSMUST00000006900.7	chr13	-	721	3	FSM	ENSMUSG00000006717.8	ENSMUST00000006900.7	721	3	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_1	3	1464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAAGGAAGTATTTTCTTT	4817	False	NA	-3	True	AATAAA	-19	NA	25015500	25001930	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_25002175_25004697_25004883_25015208
ENSMUST00000006914.11	chr10	+	2395	11	FSM	ENSMUSG00000006731.11	ENSMUST00000006914.11	2395	11	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_6	12.214745187682	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTACTTGTGTCTCTGTG	354	False	NA	8	True	GGGGCT	-23	NA	127001093	127008199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569_127003751_127005612_127005712_127005846_127006038_127006459_127006601_127006787_127007029_127007484
ENSMUST00000006915.14	chr10	+	1791	6	FSM	ENSMUSG00000006732.15	ENSMUST00000006915.14	1791	6	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_3	29.1245600825146	2109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTGAGTGTTTGCCTG	NA	False	NA	13	True	TTTAAA	-18	NA	126877800	126882234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126881147
ENSMUST00000006956.9	chr7	-	555	4	FSM	ENSMUSG00000040026.9	ENSMUST00000006956.9	555	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	7.31816613336672	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCGCTGTCACTGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	46365124	46361421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_46361689_46362012_46362152_46364433_46364529_46365070
ENSMUST00000007005.14	chr17	-	2250	9	FSM	ENSMUSG00000023832.15	ENSMUST00000007005.14	2250	9	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_2	90.2592619901138	859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGCTGGGAGGTATGCA	NA	False	NA	NA	False	AATAAA	-19	NA	13179634	13161776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
ENSMUST00000007042.6	chr18	+	1996	20	FSM	ENSMUSG00000024474.8	ENSMUST00000007042.6	1996	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_14	168.043095646503	5220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTGTTGGGCATTCC	NA	False	NA	10	True	ATTAAA	-20	NA	36877708	36890692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882039_36882266_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888477_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
ENSMUST00000007130.15	chr9	+	3623	15	FSM	ENSMUSG00000006932.18	ENSMUST00000007130.15	3623	15	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	74.0160283248135	13637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTCATTTTGTTTGTT	NA	False	NA	27	True	ATTAAA	-16	NA	120762465	120789573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_120762705_120779238_120779300_120779587_120779816_120779959_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785039_120786172_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
ENSMUST00000007212.9	chr16	+	2961	21	FSM	ENSMUSG00000006998.17	ENSMUST00000007212.9	2961	21	0	0	0	0	multi-exon	FALSE	canonical	3	2673	junction_8	225.447882003801	5845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	23	True	AATAAA	-16	NA	20470401	20482164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
ENSMUST00000007251.14	chr17	+	1945	20	FSM	ENSMUSG00000007036.16	ENSMUST00000007251.14	1945	20	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	22.1293102285439	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTGCTTATGAGATGT	NA	False	NA	32	True	AATAAA	-19	NA	35308266	35321963	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35308433_35309344_35309402_35309997_35310065_35310546_35310634_35313226_35313313_35315279_35315354_35315457_35315581_35317669_35317785_35317874_35317977_35319310_35319375_35319614_35319665_35319937_35320062_35320217_35320323_35320517_35320582_35320803_35320861_35320945_35321009_35321121_35321199_35321273_35321373_35321450_35321498_35321645
ENSMUST00000007255.13	chr17	+	1342	7	FSM	ENSMUSG00000007039.13	ENSMUST00000007255.13	1342	7	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_1	36.6488593122472	6164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGGGCTGTGACTGGTTT	NA	False	NA	13	True	AATAAA	-19	NA	35278010	35281067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
ENSMUST00000007266.14	chr17	+	873	5	FSM	ENSMUSG00000007050.18	ENSMUST00000007266.14	873	5	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_1	596.250995806296	2670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	243	False	NA	26	True	AATAAA	-20	NA	35201104	35204867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35201344_35201595_35201664_35204084_35204116_35204224_35204285_35204392
ENSMUST00000007317.8	chr11	-	1576	6	FSM	ENSMUSG00000020911.15	ENSMUST00000007317.8	1576	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_5	2.56124969497314	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATACCTTGCTTATTTCAG	9599	False	NA	NA	False	AATAAA	-21	NA	100036946	100031635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100031994_100032105_100032232_100032348_100032511_100032877_100033035_100033251_100033335_100036256
ENSMUST00000007444.14	chr11	-	2099	13	FSM	ENSMUSG00000069631.15	ENSMUST00000007444.14	2099	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	54.9804889635102	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATTAAAATTTTCAGAGA	NA	False	NA	-34	True	NA	NA	NA	106084362	106054176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106071780_106071810_106075387_106075446_106077926_106078007_106084291
ENSMUST00000007482.8	chr19	-	1764	4	FSM	ENSMUSG00000007338.11	ENSMUST00000007482.8	1764	4	0	0	0	0	multi-exon	FALSE	canonical	3	907	junction_2	10.0332779621949	6533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGAAACTCCTGTAACAC	NA	False	NA	0	True	ATTAAA	-42	NA	6107815	6103651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6105013_6105105_6105231_6106958_6107110_6107688
ENSMUST00000007533.15	chr11	+	615	6	FSM	ENSMUSG00000078656.12	ENSMUST00000007533.15	615	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	475.771541813926	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTCTGTGACTCTTTA	NA	False	NA	1	True	AGTAAA	-17	NA	101144532	101148875	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101148726
ENSMUST00000007602.15	chr6	+	2515	7	FSM	ENSMUSG00000007458.15	ENSMUST00000007602.15	2515	7	0	0	0	0	multi-exon	FALSE	canonical	3	1209	junction_5	55.6586820620906	7737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTTGTCGTTTGTGCT	2664	False	NA	6	True	ATTAAA	-15	NA	122285678	122294639	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
ENSMUST00000007708.14	chr17	+	2410	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	0	0	0	0	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	1577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTTAGTAATCGGAATGG	NA	False	NA	39	True	AATAAA	-24	NA	21165572	21186178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
ENSMUST00000007747.10	chr17	+	2025	13	FSM	ENSMUSG00000007603.10	ENSMUST00000007747.10	2025	13	0	0	0	0	multi-exon	TRUE	canonical	3	220	junction_6	33.8230690505755	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTATTTTGTTGGTT	9244	False	NA	16	True	AATAAA	-17	NA	57071777	57076841	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
ENSMUST00000007800.8	chr9	+	4046	3	FSM	ENSMUSG00000007656.14	ENSMUST00000007800.8	4046	3	0	0	0	0	multi-exon	FALSE	canonical	3	5814	junction_2	96	9674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGTTTTGTCTTATTT	NA	False	NA	20	True	AATAAA	-30	NA	74944999	74967595	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_74945244_74959514_74959638_74963916
ENSMUST00000007803.12	chr2	-	2417	3	FSM	ENSMUSG00000007659.19	ENSMUST00000007803.12	2417	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_2	89.5	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCCTTGGCTCTGCGC	NA	False	NA	-5	True	AATAAA	-22	NA	152673648	152622587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_152624203_152671346_152672023_152673522
ENSMUST00000007921.9	chr11	-	813	2	FSM	ENSMUSG00000007777.10	ENSMUST00000007921.9	813	2	0	0	0	0	multi-exon	FALSE	canonical	3	574	junction_1	0	3594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTATGTGTATGAATGCT	5184	False	NA	-12	True	ATTAAA	-14	NA	51579480	51576212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_51576920_51579374
ENSMUST00000007981.9	chr7	-	1295	7	FSM	ENSMUSG00000007837.12	ENSMUST00000007981.9	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	9.01233722306385	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAATAAAAATGCAA	NA	False	NA	-53	True	AATAAA	-15	NA	44711076	44703036	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44709628_44709811_44710164_44710317_44711011
ENSMUST00000008004.10	chr8	-	2137	13	FSM	ENSMUSG00000057788.14	ENSMUST00000008004.10	2137	13	0	0	0	0	multi-exon	TRUE	canonical	3	250	junction_9	19.6148682268211	1081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGGAATCCAATAGCTAC	9931	False	NA	-24	True	NA	NA	NA	70755139	70745515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70746338_70746477_70746550_70746648_70746738_70747336_70747412_70748016_70748115_70748224_70748302_70749032_70749109_70749552_70749694_70749780_70749969_70750525_70750648_70750730_70750817_70753628_70753753_70754972
ENSMUST00000008036.9	chr9	+	499	3	Antisense	novelGene_ENSMUSG00000007892.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	355647	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATACGCCTGCGCGCAGCT	NA	False	NA	NA	False	NA	NA	NA	61820565	61821824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr9_+_61820804_61821169_61821245_61821638
ENSMUST00000008094.10	chr8	-	1978	5	FSM	ENSMUSG00000007950.10	ENSMUST00000008094.10	1978	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	6.41774882649672	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCCTCCAATTTGTGATT	NA	False	NA	-6	True	NA	NA	NA	71916299	71909348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71910022_71910681_71910899_71911021_71911193_71913889_71914617_71916109
ENSMUST00000008528.8	chr7	+	1233	2	FSM	ENSMUSG00000008384.9	ENSMUST00000008528.8	1233	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	508	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGCTTCTTTGCAT	6589	False	NA	12	True	ATTAAA	-22	NA	27186334	27189741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27186504_27188677
ENSMUST00000008537.10	chr16	-	2858	4	FSM	ENSMUSG00000008393.10	ENSMUST00000008537.10	2858	4	0	0	0	0	multi-exon	TRUE	canonical	3	300	junction_3	44.5146667465405	1795	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACTGTAAAAGGTTGTG	NA	False	NA	-11	True	AATAAA	-21	NA	8490019	8476443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_8478968_8481450_8481574_8482118_8482287_8489976
ENSMUST00000008594.9	chr8	+	948	5	FSM	ENSMUSG00000008450.9	ENSMUST00000008594.9	948	5	0	0	0	0	multi-exon	FALSE	canonical	3	2641	junction_1	453.90775494587	8934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAACAGTTTAAATTGTTT	NA	False	NA	-8	True	AATAAA	-15	NA	106587211	106605962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106603241_106605436
ENSMUST00000008745.13	chr3	-	1081	5	FSM	ENSMUSG00000008601.13	ENSMUST00000008745.13	1081	5	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_4	5.2618912949623	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTGCTGCCTTCCATCTG	5701	False	NA	0	True	AATAAA	-24	NA	88455607	88449335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88449678_88450007_88450089_88450626_88450821_88452367_88452564_88455339
ENSMUST00000008812.9	chr17	-	560	5	FSM	ENSMUSG00000008668.16	ENSMUST00000008812.9	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	20050	junction_4	1387.25833481007	153874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174651	34170972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051_34174151_34174591
ENSMUST00000008826.14	chrX	+	799	7	FSM	ENSMUSG00000008682.14	ENSMUST00000008826.14	799	7	0	0	0	0	multi-exon	FALSE	canonical	3	2920	junction_1	2439.95592514838	377505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTCTGATTCTT	NA	False	NA	12	True	AATAAA	-22	NA	73314417	73316741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73314481_73314584_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
ENSMUST00000008893.9	chr19	+	1888	11	FSM	ENSMUSG00000024835.16	ENSMUST00000008893.9	1888	11	0	0	0	0	multi-exon	TRUE	canonical	3	251	junction_1	114.751906302248	1786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3575	False	NA	18	True	AATAAA	-19	NA	4198617	4204034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4198736_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
ENSMUST00000008966.13	chr12	-	648	3	FSM	ENSMUSG00000008822.16	ENSMUST00000008966.13	648	3	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_2	28.5	5082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGCTTCCCCCCCTCCCT	4291	False	NA	0	True	AATAAA	-24	NA	85327209	85319171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_85319602_85326764_85326857_85327083
ENSMUST00000009036.11	chr8	-	1354	9	FSM	ENSMUSG00000008892.13	ENSMUST00000009036.11	1354	9	0	0	0	0	multi-exon	FALSE	canonical	3	2053	junction_8	117.712573669936	11080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCATCTGACTTCTTAG	NA	False	NA	-11	True	AATAAA	-22	NA	23083774	23067101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
ENSMUST00000009039.6	chr15	-	570	4	FSM	ENSMUSG00000058600.14	ENSMUST00000009039.6	570	4	0	0	0	0	multi-exon	FALSE	canonical	3	4307	junction_1	558.07426825548	17861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGTGTCTGTTTG	361	False	NA	-25	True	AATAAA	-22	NA	34443368	34440655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170
ENSMUST00000009102.9	chr3	+	1456	6	FSM	ENSMUSG00000008958.15	ENSMUST00000009102.9	1456	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	358.969413738831	3726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAATAA	2560	False	NA	NA	False	NA	NA	NA	95018332	95030362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95018526_95025535_95025689_95025959_95026075_95026441_95026619_95028572_95028718_95029689
ENSMUST00000009220.5	chr11	+	792	6	FSM	ENSMUSG00000009076.11	ENSMUST00000009220.5	792	6	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	205.698225563567	5049	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654677	4687669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_4654722_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
ENSMUST00000009396.13	chr7	+	1582	9	FSM	ENSMUSG00000000244.18	ENSMUST00000009396.13	1582	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	3.07205143186113	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTAGAATCCTTTCTT	3169	False	NA	NA	False	NA	NA	NA	142558782	142573223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_142558913_142559640_142559756_142560644_142560743_142564770_142564846_142568695_142568798_142569317_142569405_142570937_142571022_142571315_142571411_142572427
ENSMUST00000009435.12	chr10	+	2294	6	FSM	ENSMUSG00000009291.14	ENSMUST00000009435.12	2294	6	0	0	0	0	multi-exon	FALSE	canonical	3	637	junction_4	46.3188946327522	840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGATTTCTTTGTTTTGT	1291	False	NA	32	True	AATAAA	-15	NA	77417553	77434566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_77417762_77423084_77423138_77425467_77425577_77428679_77428852_77429697_77429745_77432861
ENSMUST00000009530.5	chrX	+	833	6	FSM	ENSMUSG00000001131.12	ENSMUST00000009530.5	833	6	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_1	211.264384125673	4168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTCTGTATAGTGTTT	NA	False	NA	18	True	AATAAA	-19	NA	20736459	20740974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_20736564_20737269_20737402_20739015_20739096_20739288_20739416_20739606_20739732_20740709
ENSMUST00000009693.15	chr2	-	798	5	FSM	ENSMUSG00000009549.15	ENSMUST00000009693.15	798	5	0	0	0	0	multi-exon	FALSE	canonical	3	1430	junction_1	23.7421039505769	12197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTGGTTTGTTTTTCTTG	NA	False	NA	-2	True	ATTAAA	-16	NA	118310192	118306330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_118306789_118307307_118307341_118309401_118309515_118309858_118309932_118310071
ENSMUST00000009699.16	chr2	-	1733	7	FSM	ENSMUSG00000009555.17	ENSMUST00000009699.16	1733	7	0	0	0	0	multi-exon	FALSE	canonical	3	1063	junction_2	88.3259430870807	588	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGCGTTTCCTGTGTTC	NA	False	NA	NA	False	ATTAAA	-25	NA	32602796	32597449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_32598302_32599478_32599628_32599784_32599957_32600054_32600222_32600488_32600580_32602042_32602125_32602576
ENSMUST00000009707.14	chr2	+	1536	5	FSM	ENSMUSG00000009563.17	ENSMUST00000009707.14	1536	5	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_1	20.9105236663265	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGACCAAAGTTTCTTAC	589	False	NA	9	True	AATAAA	-20	NA	32647245	32652256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_32647463_32648682_32648949_32649538_32649715_32650600_32650729_32651507
ENSMUST00000009728.13	chr15	+	819	4	FSM	ENSMUSG00000022415.13	ENSMUST00000009728.13	819	4	0	0	0	0	multi-exon	FALSE	canonical	3	1267	junction_2	72.7232195840274	5097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGCCTGTGTGGATTA	NA	False	NA	18	True	NA	NA	NA	79975534	79997642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_79975694_79994644_79994883_79995799_79995946_79997366
ENSMUST00000009740.9	chrX	-	1933	13	FSM	ENSMUSG00000009596.10	ENSMUST00000009740.9	1933	13	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	4.16999866773227	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACGTCTCTAATTTCT	NA	False	NA	NA	False	NA	NA	NA	133377239	133360866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_133361415_133365048_133365109_133366370_133366484_133366656_133366891_133367272_133367375_133367824_133367898_133368646_133368689_133370864_133370921_133371128_133371259_133372140_133372275_133372779_133372859_133373654_133373717_133376939
ENSMUST00000009777.4	chr1	-	871	2	FSM	ENSMUSG00000009633.4	ENSMUST00000009777.4	871	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCATTATTTAATTCTTG	NA	False	NA	-1	True	AATAAA	-16	NA	192955525	192954468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_192955111_192955296
ENSMUST00000010007.9	chr4	+	1142	8	FSM	ENSMUSG00000009863.15	ENSMUST00000010007.9	1142	8	0	0	0	0	multi-exon	FALSE	canonical	3	2820	junction_2	205.868890316143	26056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCGTTACTCTCCATTAT	NA	False	NA	NA	False	AATAAA	-14	NA	140688513	140706504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425_140703528_140704688_140704812_140706335
ENSMUST00000010020.12	chr2	+	727	5	FSM	ENSMUSG00000009876.14	ENSMUST00000010020.12	727	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	3.69966214673719	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTGGACTATCTGTTAT	NA	False	NA	NA	False	AATAAA	-31	NA	152596092	152606957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_152596145_152597074_152597160_152598929_152599095_152602557_152602690_152606664
ENSMUST00000010085.4	chrX	-	2393	22	FSM	ENSMUSG00000009941.11	ENSMUST00000010085.4	2393	22	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_3	6.66632652193486	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTATGTCTTGAAGTGCT	NA	False	NA	-2	True	AATAAA	-18	NA	133865503	133845276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_133845538_133845640_133845702_133850435_133850634_133851095_133851169_133851717_133851761_133851850_133851967_133852078_133852138_133852238_133852347_133852497_133852554_133852635_133852891_133853240_133853278_133855976_133856087_133856257_133856366_133856471_133856561_133856713_133856784_133856913_133856995_133857111_133857217_133857340_133857425_133857798_133857953_133858216_133858320_133862672_133862768_133865376
ENSMUST00000010127.12	chrX	+	2473	13	FSM	ENSMUSG00000031397.12	ENSMUST00000010127.12	2473	13	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_9	3.8151743807532	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTATGCAGTTTGTGCC	6476	False	NA	6	True	AATAAA	-18	NA	73220864	73252106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73221030_73225389_73225505_73234827_73234926_73237124_73237317_73237399_73237528_73240589_73240784_73241245_73241411_73244203_73244361_73246136_73246268_73248479_73248564_73249479_73249577_73249950_73250071_73251279
ENSMUST00000010189.3	chr9	+	2194	2	FSM	ENSMUSG00000010045.3	ENSMUST00000010189.3	2194	2	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	0	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTTGTGCAGCCCTCTC	NA	False	NA	33	True	AATAAA	-38	NA	107411143	107415872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_107412529_107415063
ENSMUST00000010191.13	chr9	+	1893	4	FSM	ENSMUSG00000010047.13	ENSMUST00000010191.13	1893	4	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_3	7.31816613336672	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTCTTGTCTTTTTCTGC	NA	False	NA	15	True	ATTAAA	-17	NA	107446315	107449975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_107446433_107447302_107448270_107448690_107448781_107449256
ENSMUST00000010192.11	chr9	+	2056	12	FSM	ENSMUSG00000010048.11	ENSMUST00000010192.11	2056	12	0	0	0	0	multi-exon	TRUE	canonical	3	631	junction_11	35.5716016363504	1560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCCTTTATCCTGAGTC	NA	False	NA	21	True	ATTAAA	-33	NA	107464840	107470237	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
ENSMUST00000010201.9	chr9	+	1441	11	FSM	ENSMUSG00000010057.9	ENSMUST00000010201.9	1441	11	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_4	11.6721891691319	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGAGTACTGCTTCAGCC	NA	False	NA	13	True	AATAAA	-24	NA	107419424	107422905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107421834_107421945_107422040_107422112_107422231_107422443_107422587_107422689
ENSMUST00000010211.7	chr9	+	1727	5	FSM	ENSMUSG00000010067.14	ENSMUST00000010211.7	1727	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	9.63068014212911	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTTGGACTCTATAGA	NA	False	NA	9	True	AATAAA	-16	NA	107431781	107439462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_107432125_107434651_107434757_107434968_107435267_107435385_107435502_107438597
ENSMUST00000010239.6	chr19	-	1819	9	FSM	ENSMUSG00000010095.14	ENSMUST00000010239.6	1819	9	0	0	0	0	multi-exon	FALSE	canonical	3	2610	junction_8	198.183902915953	3627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATACTGGGTGTTTTTGTCT	NA	False	NA	-18	True	TTTAAA	-26	NA	8691243	8684980	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
ENSMUST00000010241.14	chr19	+	2326	21	FSM	ENSMUSG00000010097.16	ENSMUST00000010241.14	2326	21	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_4	71.7857924661976	520	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGGCTTGTTTCCCTCA	8569	False	NA	47	True	GATAAA	-26	NA	8734436	8748286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8742396_8744160_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364_8746548_8747623_8747685_8747937
ENSMUST00000010248.4	chr19	+	748	2	FSM	ENSMUSG00000117924.2	ENSMUST00000010248.4	748	2	0	0	0	0	multi-exon	FALSE	canonical	3	838	junction_1	0	4519	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCATTCTGTCCTCTCTCTC	6519	False	NA	NA	False	AATAAA	-38	NA	8748359	8749839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8748680_8749411
ENSMUST00000010249.7	chr19	-	818	5	FSM	ENSMUSG00000118346.2	ENSMUST00000010249.7	818	5	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	40.2833712591188	2735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAATATATTACTTTTC	5074	False	NA	-31	True	NA	NA	NA	8751831	8749915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8751057_8751698
ENSMUST00000010254.16	chr19	+	1780	11	FSM	ENSMUSG00000010110.18	ENSMUST00000010254.16	1780	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	60.8157874239905	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6625	False	NA	12	True	NA	NA	NA	8718852	8733006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732240
ENSMUST00000010348.7	chr9	+	812	5	Antisense	novelGene_ENSMUSG00000079677.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3085	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTCCTCAGCGACAGTAAAC	2896	False	NA	NA	False	NA	NA	NA	20978815	20984840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr9_+_20979222_20979325_20979414_20984370_20984478_20984559_20984615_20984684
ENSMUST00000010434.8	chr1	+	3458	4	FSM	ENSMUSG00000010290.8	ENSMUST00000010434.8	3458	4	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_3	24.6080384337223	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGCAGGCCTGTCATTT	NA	False	NA	NA	False	AATAAA	-15	NA	43137869	43155107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_43138023_43139874_43140042_43150157_43150534_43152345
ENSMUST00000010451.8	chr7	+	1831	3	FSM	ENSMUSG00000010307.8	ENSMUST00000010451.8	1831	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	1	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTTCCTGACTTGTCTG	NA	False	NA	NA	False	AATAAA	-24	NA	46700348	46704525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_46700550_46702597_46702863_46703160
ENSMUST00000010502.13	chr11	+	1362	7	FSM	ENSMUSG00000010358.14	ENSMUST00000010502.13	1362	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	8.33499983336666	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCCATTCTCCAGCAAC	981	False	NA	NA	False	NA	NA	NA	101339232	101349524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101339449_101347391_101347491_101348015_101348164_101348241_101348349_101348445_101348633_101348716_101348824_101349026
ENSMUST00000010506.10	chr11	-	1124	7	Antisense	novelGene_ENSMUSG00000010362.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8997	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTACCGCGAAATTTAAACC	NA	False	NA	NA	False	NA	NA	NA	101526926	101518767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr11_-_101518891_101519098_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
ENSMUST00000010520.10	chr14	-	824	4	FSM	ENSMUSG00000010376.16	ENSMUST00000010520.10	824	4	0	0	0	0	multi-exon	FALSE	canonical	3	1795	junction_3	42.0502345085283	28808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGACTCTTTCTTCTTGA	NA	False	NA	-11	True	AATAAA	-15	NA	55909581	55899719	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55900083_55900871_55900955_55901268_55901317_55909251
ENSMUST00000010550.12	chr14	+	418	5	FSM	ENSMUSG00000010406.13	ENSMUST00000010550.12	418	5	0	0	0	0	multi-exon	FALSE	canonical	3	1056	junction_1	196.876230154887	19730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTGGCTTTCTTTTC	NA	False	NA	27	True	AATAAA	-28	NA	54664365	54667213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_54664418_54664490_54664549_54664627_54664696_54666040_54666106_54667038
ENSMUST00000010736.9	chr17	-	2976	11	FSM	ENSMUSG00000010592.10	ENSMUST00000010736.9	2976	11	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_4	74.6324996231534	873	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCACTGACTTACTGTCC	NA	False	NA	-5	True	AATAAA	-16	NA	50600664	50586424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_50588340_50590155_50590255_50591265_50591380_50592023_50592075_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
ENSMUST00000010795.5	chr9	-	1689	12	FSM	ENSMUSG00000010651.5	ENSMUST00000010795.5	1689	12	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_6	59.9400526973023	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGGTCCAGCTCTTGCT	NA	False	NA	NA	False	AGTAAA	-35	NA	118986161	118977090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_118977482_118977801_118977948_118978029_118978086_118978338_118978519_118978667_118978859_118979891_118979973_118980883_118980983_118982737_118982781_118982993_118983074_118984812_118984871_118985658_118985753_118985891
ENSMUST00000010804.4	chr9	-	2657	15	FSM	ENSMUSG00000010660.4	ENSMUST00000010804.4	2657	15	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_14	9.15540433686184	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTCTAGTCTCTTTACAA	2838	False	NA	NA	False	TATAAA	-25	NA	118922570	118900594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_118900956_118901090_118901241_118901317_118901451_118901542_118901722_118902523_118902641_118902830_118902991_118903232_118903392_118903477_118903628_118903703_118903849_118903940_118904143_118904831_118905064_118905151_118905282_118909989_118910219_118913657_118913823_118922425
ENSMUST00000010807.6	chr19	+	3460	12	FSM	ENSMUSG00000010663.6	ENSMUST00000010807.6	3460	12	0	0	0	0	multi-exon	TRUE	canonical	3	652	junction_7	60.0436480355873	658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	18	True	AATAAA	-19	NA	10160251	10174238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
ENSMUST00000010904.5	chr7	-	757	2	FSM	ENSMUSG00000010760.6	ENSMUST00000010904.5	757	2	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	0	435	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTCTGTGTAGTTC	NA	False	NA	2	True	AATAAA	-27	NA	143056278	143055281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_143055554_143055793
ENSMUST00000010940.11	chr6	-	1736	13	FSM	ENSMUSG00000010796.12	ENSMUST00000010940.11	1736	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	5.42307313450798	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACTGTGCTCATTTGTC	-6	True	NA	NA	False	AATAAA	-24	NA	18109056	18050962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_18051403_18054526_18054641_18055433_18055540_18071963_18072074_18073760_18073818_18074824_18074901_18075759_18075885_18076503_18076639_18077151_18077264_18103498_18103611_18104774_18104898_18108401_18108502_18108930
ENSMUST00000010974.9	chr15	+	1411	5	FSM	ENSMUSG00000010830.9	ENSMUST00000010974.9	1411	5	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	14.7986485869487	605	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCAAGTATTTATTTATA	NA	False	NA	11	True	AATAAA	-16	NA	79400611	79411940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_79400842_79407011_79407113_79409004_79409164_79409867_79410121_79411272
ENSMUST00000011055.7	chr2	+	919	7	FSM	ENSMUSG00000010911.13	ENSMUST00000011055.7	919	7	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_6	40.9691618442729	2717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGAAATTTTCTTGATGT	4593	False	NA	25	True	AATAAA	-21	NA	102904019	102922989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093_102922262_102922809
ENSMUST00000011058.9	chr2	-	2506	11	FSM	ENSMUSG00000010914.11	ENSMUST00000011058.9	2506	11	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	20.370567002418	967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTGATATGACATGCAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	102903858	102851419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_102852615_102854509_102854575_102858620_102858780_102860622_102860682_102863507_102863656_102865559_102865735_102871387_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
ENSMUST00000011450.8	chr8	+	2681	14	FSM	ENSMUSG00000011306.8	ENSMUST00000011450.8	2681	14	0	0	0	0	multi-exon	FALSE	canonical	3	384	junction_4	56.2515483021626	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGCTCCTCTGGTCTTC	2157	False	NA	NA	False	GATAAA	-14	NA	70495462	70524997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
ENSMUST00000011493.6	chr7	+	1619	9	FSM	ENSMUSG00000011349.6	ENSMUST00000011493.6	1619	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.69771416230941	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCGAGAGTTGATTATC	NA	False	NA	4	True	NA	NA	NA	24569481	24577076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_24569598_24571902_24572131_24572204_24572360_24573346_24573424_24573622_24573804_24574331_24574459_24575172_24575234_24575373_24575549_24576577
ENSMUST00000011733.9	chr17	+	1748	13	FSM	ENSMUSG00000011589.10	ENSMUST00000011733.9	1748	13	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_12	6.07533721057706	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCTGCACTGGTTCTT	3933	False	NA	6	True	AATAAA	-16	NA	56293510	56303881	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_56293654_56294742_56294839_56295123_56295256_56295673_56295776_56297211_56297235_56297418_56297541_56298166_56298377_56300842_56300942_56302356_56302517_56302857_56302938_56303071_56303324_56303420_56303510_56303641
ENSMUST00000011896.8	chr19	+	1775	4	FSM	ENSMUSG00000011752.8	ENSMUST00000011896.8	1775	4	0	0	0	0	multi-exon	FALSE	canonical	3	5418	junction_2	350.959003620398	22193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTACTGTTTGTCTTGTGT	4060	False	NA	0	True	AATAAA	-17	NA	41900361	41907099	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_41900626_41904043_41904319_41905081_41905263_41906044
ENSMUST00000011981.5	chr8	+	1536	5	FSM	ENSMUSG00000011837.5	ENSMUST00000011981.5	1536	5	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_3	11.3880419739304	376	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGATTCCCCCTTTGAC	NA	False	NA	16	True	AATAAA	-16	NA	4303079	4306220	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_4303305_4304281_4304402_4304550_4304620_4304991_4305374_4305480
ENSMUST00000012028.14	chr5	-	1762	5	FSM	ENSMUSG00000011884.14	ENSMUST00000012028.14	1762	5	0	0	0	0	multi-exon	TRUE	canonical	3	1353	junction_4	27.6541136180497	370	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTCTGTGGCGCTTGAT	NA	False	NA	3	True	AATAAA	-29	NA	114829045	114807458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_114808651_114812114_114812266_114814325_114814460_114815681_114815741_114828819
ENSMUST00000012104.7	chr15	-	2175	9	FSM	ENSMUSG00000011960.13	ENSMUST00000012104.7	2175	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	11.1439445440113	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98465517	98441091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98442490_98444404_98444476_98444625_98444790_98446546_98446593_98449794_98449858_98452481_98452543_98458077_98458207_98462927_98463010_98465356
ENSMUST00000012152.13	chr16	-	4045	10	FSM	ENSMUSG00000003166.21	ENSMUST00000012152.13	4045	10	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_7	135.772503989233	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTCAGTTCTTGCTGT	NA	False	NA	-2	True	AATAAA	-18	NA	17709557	17658218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676444_17677267_17677391_17690426_17690550_17709249
ENSMUST00000012348.9	chr3	-	1064	8	FSM	ENSMUSG00000040562.13	ENSMUST00000012348.9	1064	8	0	0	0	0	multi-exon	FALSE	canonical	3	626	junction_6	40.3692143766479	3259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTCAGTGTATTATTTT	2042	False	NA	-4	True	AATAAA	-13	NA	107893769	107889017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_107889455_107891251_107891363_107891444_107891541_107892364_107892466_107892562_107892645_107892933_107892999_107893349_107893426_107893673
ENSMUST00000012440.14	chr17	-	2426	10	FSM	ENSMUSG00000012296.17	ENSMUST00000012440.14	2426	10	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_7	101.660412679532	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAATTTCTTTCTCCTTCCC	5822	False	NA	-27	True	AATAAA	-21	NA	46593936	46568796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46593271_46593366_46593885
ENSMUST00000012540.5	chr6	-	2211	4	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4989	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAAGGGTAGGTCCTGCT	7472	False	NA	NA	False	NA	NA	NA	122691592	122684526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr6_-_122684893_122688496_122688763_122689587_122689675_122690100
ENSMUST00000012627.5	chr6	-	670	4	FSM	ENSMUSG00000012483.5	ENSMUST00000012627.5	670	4	0	0	0	0	multi-exon	FALSE	canonical	3	1410	junction_2	59.4474557908074	12304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTGGTCAATTGTTTT	NA	False	NA	-11	True	AATAAA	-14	NA	8259173	8255935	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_8256248_8256694_8256804_8257686_8257762_8258999
ENSMUST00000012679.15	chr6	-	4251	23	FSM	ENSMUSG00000012535.15	ENSMUST00000012679.15	4251	23	0	0	0	0	multi-exon	FALSE	canonical	3	521	junction_17	54.5301683125804	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	NA	False	NA	-2	True	TTTAAA	-5	NA	29609886	29540825	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
ENSMUST00000013299.11	chr8	-	1275	7	FSM	ENSMUSG00000013155.11	ENSMUST00000013299.11	1275	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	11.5854314646552	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTGTTCCATAGGAG	NA	False	NA	-15	True	ATTAAA	-14	NA	106434565	106430283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455
ENSMUST00000013304.8	chr8	-	1629	8	FSM	ENSMUSG00000013160.8	ENSMUST00000013304.8	1629	8	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_1	38.5115938016444	1158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCTGTCTGTCTGCTCC	NA	False	NA	-10	True	AATAAA	-18	NA	106292679	106251096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_106251697_106251788_106251867_106251954_106252132_106252255_106252334_106255805_106255886_106257446_106257626_106265952_106266125_106292414
ENSMUST00000013338.14	chr9	-	3924	16	FSM	ENSMUSG00000064145.13	ENSMUST00000013338.14	3924	16	0	0	0	0	multi-exon	TRUE	canonical	3	517	junction_5	114.47891605978	819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGAGTCTTTTTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	108526579	108480140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108526427
ENSMUST00000013737.13	chr1	-	1623	13	FSM	ENSMUSG00000013593.13	ENSMUST00000013737.13	1623	13	0	0	0	0	multi-exon	FALSE	canonical	3	1142	junction_12	107.460457843804	8564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTAATGTGTCTTTCTT	NA	False	NA	-1	True	ATTAAA	-28	NA	171074691	171062421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066083_171066162_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
ENSMUST00000013766.13	chr5	+	966	7	FSM	ENSMUSG00000013622.16	ENSMUST00000013766.13	966	7	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_6	22.1108319357027	1856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGTACCTGTGCGTG	908	False	NA	12	True	AATAAA	-25	NA	31205978	31211967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31206101_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
ENSMUST00000013845.13	chr14	-	1173	7	FSM	ENSMUSG00000013701.14	ENSMUST00000013845.13	1173	7	0	0	0	0	multi-exon	FALSE	canonical	3	3717	junction_4	299.373048590253	27299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTATCTCCATTTAATA	NA	False	NA	NA	False	AATAAA	-40	NA	31923855	31902118	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31915810_31915905_31920925_31920985_31923599
ENSMUST00000013851.4	chr3	-	1122	2	FSM	ENSMUSG00000013707.4	ENSMUST00000013851.4	1122	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGGGCTCACGGTTTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	95049671	95046831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95047908_95049625
ENSMUST00000013882.10	chr6	-	2072	11	FSM	ENSMUSG00000005362.15	ENSMUST00000013882.10	2072	11	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	56.1066840937869	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGCTCCTTAATGTCATT	NA	False	NA	-33	True	AATAAA	-17	NA	106777026	106757161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_106758072_106758663_106758796_106759423_106759489_106759871_106759988_106760385_106760471_106761377_106761441_106767792_106767953_106771148_106771299_106771955_106772159_106772842_106772956_106776951
ENSMUST00000013910.5	chr17	+	1142	3	FSM	ENSMUSG00000013766.12	ENSMUST00000013910.5	1142	3	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	34.5	1328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGAGAGCTGTCTGTG	NA	False	NA	20	True	NA	NA	NA	35295912	35297780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35296183_35296812_35296939_35297034
ENSMUST00000013966.8	chr9	-	888	3	FSM	ENSMUSG00000013822.8	ENSMUST00000013966.8	888	3	0	0	0	0	multi-exon	FALSE	canonical	3	357	junction_2	52.5	2546	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCGCCGCTGTACTTCTT	7944	False	NA	-8	True	AATAAA	-15	NA	22028468	22024286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_22024976_22025103_22025240_22028405
ENSMUST00000013970.9	chr10	-	3307	10	FSM	ENSMUSG00000025417.9	ENSMUST00000013970.9	3307	10	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_3	43.7148447820759	353	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAGAAGTTTTTGTTTT	NA	False	NA	-4	True	AATAAA	-23	NA	127047424	127032935	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_127035014_127035181_127035286_127035457_127035726_127036052_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482_127042580_127044738_127044837_127047206
ENSMUST00000014058.11	chr7	+	1373	6	FSM	ENSMUSG00000030693.11	ENSMUST00000014058.11	1373	6	0	0	0	0	multi-exon	FALSE	canonical	2	31	junction_4	14.5134420452214	216	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCAATGTGTGTGCCTCT	355	False	NA	9	True	ATTAAA	-16	NA	43430458	43434834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_43430571_43430922_43431050_43432159_43432344_43432880_43433156_43433739_43433874_43434293
ENSMUST00000014220.15	chr16	+	838	5	FSM	ENSMUSG00000014075.16	ENSMUST00000014220.15	838	5	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_3	20.9568008054665	4510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGAATAGTTTTTATG	NA	False	NA	9	True	AATAAA	-21	NA	32238519	32247917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32238746_32241637_32241772_32244058_32244129_32245675_32245740_32247573
ENSMUST00000014221.13	chr2	+	2609	7	FSM	ENSMUSG00000014077.14	ENSMUST00000014221.13	2609	7	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_2	25.1197133741609	1494	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTGAGTTTTACCCGG	NA	False	NA	NA	False	AATAAA	-25	NA	119378177	119417508	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_119378399_119391211_119391285_119397130_119397212_119402248_119402377_119411175_119411238_119415010_119415134_119415587
ENSMUST00000014321.5	chr11	+	1784	7	FSM	ENSMUSG00000014177.11	ENSMUST00000014321.5	1784	7	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_1	45.7666181111663	2759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGATGTGTGGTCCCATT	9241	False	NA	10	True	TATAAA	-18	NA	62770280	62786011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_62770422_62772762_62772846_62774452_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
ENSMUST00000014389.6	chr11	+	2174	7	FSM	ENSMUSG00000014245.9	ENSMUST00000014389.6	2174	7	0	0	0	0	multi-exon	TRUE	canonical	3	156	junction_1	58.9736287580211	908	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGTTTACATAAAGCAGTAT	NA	False	NA	NA	False	GATAAA	-4	NA	62349285	62405243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403729
ENSMUST00000014438.5	chr18	-	572	3	FSM	ENSMUSG00000014294.5	ENSMUST00000014438.5	572	3	0	0	0	0	multi-exon	FALSE	canonical	3	2929	junction_2	68.5	43167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGATGTCGTACGTCAT	NA	False	NA	NA	False	NA	NA	NA	36877610	36875384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_36875712_36877233_36877341_36877472
ENSMUST00000014445.7	chr16	-	596	5	FSM	ENSMUSG00000014301.14	ENSMUST00000014445.7	596	5	0	0	0	0	multi-exon	FALSE	canonical	3	1132	junction_4	70.3491293478462	12164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCCTGTTTGAGAAGGT	NA	False	NA	-15	True	AATAAA	-28	NA	4442852	4434327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_4434498_4434676_4434743_4434989_4435127_4435782_4435868_4442714
ENSMUST00000014457.15	chr15	-	503	4	FSM	ENSMUSG00000014313.16	ENSMUST00000014457.15	503	4	0	0	0	0	multi-exon	FALSE	canonical	3	8539	junction_3	472.446822404384	167271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGCTTGGTTATTAAT	NA	False	NA	-1	True	AATAAA	-22	NA	35938392	35932121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_35932244_35935430_35935560_35937300_35937431_35938270
ENSMUST00000014546.15	chr7	-	1949	10	FSM	ENSMUSG00000014402.16	ENSMUST00000014546.15	1949	10	0	0	0	0	multi-exon	FALSE	canonical	3	992	junction_2	86.0289931030289	3286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGTACTCTTTGCAAACG	NA	False	NA	NA	False	AATAAA	-30	NA	46569717	46538696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
ENSMUST00000014684.6	chr17	-	1046	8	FSM	ENSMUSG00000061613.14	ENSMUST00000014684.6	1046	8	0	0	0	0	multi-exon	FALSE	canonical	3	4626	junction_6	706.208473585007	27957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877866	31866054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
ENSMUST00000014698.10	chr6	-	1107	7	FSM	ENSMUSG00000014554.14	ENSMUST00000014698.10	1107	7	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_5	13.5369863706809	1541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483951	83457198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
ENSMUST00000014750.15	chr11	-	1711	8	FSM	ENSMUSG00000014606.15	ENSMUST00000014750.15	1711	8	0	0	0	0	multi-exon	FALSE	canonical	3	687	junction_5	58.5020495018625	3488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGTAAAGTCGTAACT	NA	False	NA	0	True	ATTAAA	-28	NA	70537884	70535021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70535748_70535864_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70537593
ENSMUST00000014812.13	chr5	+	3146	18	FSM	ENSMUSG00000014668.16	ENSMUST00000014812.13	3146	18	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_11	67.7699140155478	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTGTACTCCTGTGC	NA	False	NA	22	True	AATAAA	-22	NA	110283725	110319838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306667_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
ENSMUST00000014892.8	chr6	-	2984	6	FSM	ENSMUSG00000014748.14	ENSMUST00000014892.8	2984	6	0	0	0	0	multi-exon	FALSE	canonical	3	526	junction_1	47.9474712576169	2498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCTGTAGTGTGTGACC	9712	False	NA	-4	True	NA	NA	NA	83752795	83745866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83748286_83748428_83748532_83749223_83749292_83750691_83750846_83751999_83752080_83752635
ENSMUST00000014911.12	chr17	+	1891	9	FSM	ENSMUSG00000014767.18	ENSMUST00000014911.12	1891	9	0	0	0	0	multi-exon	TRUE	canonical	3	123	junction_2	77.8728932299295	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	23	True	AAGAAA	-31	NA	15720149	15737689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_15720287_15721415_15721465_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
ENSMUST00000015000.12	chr8	+	785	6	FSM	ENSMUSG00000014856.13	ENSMUST00000015000.12	785	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_4	56.0556865982391	4455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCGTGTGGGTGATGATG	251	False	NA	18	True	AATAAA	-20	NA	106052985	106055689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055091_106055239_106055325_106055403
ENSMUST00000015003.10	chr8	+	1993	10	FSM	ENSMUSG00000014859.10	ENSMUST00000015003.10	1993	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	369.398142461925	235	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGATCTGGTTCTTTGG	NA	False	NA	21	True	AATAAA	-17	NA	106024294	106032002	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106024508_106024912_106025023_106025166_106025329_106025627_106025672_106026689_106026752_106026950_106027249_106027884_106028098_106030816_106030865_106031064_106031110_106031204
ENSMUST00000015017.8	chr2	+	1203	6	FSM	ENSMUSG00000014873.16	ENSMUST00000015017.8	1203	6	0	0	0	0	multi-exon	TRUE	canonical	3	245	junction_5	33.4388995034227	2232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATATGTGTATCATTGTT	NA	False	NA	37	True	CATAAA	-32	NA	26806378	26810195	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_26806516_26806716_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809738
ENSMUST00000015124.15	chr1	-	1133	5	FSM	ENSMUSG00000014980.15	ENSMUST00000015124.15	1133	5	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_4	96.4219243740758	4426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTCGTAATCATCCATCA	NA	False	NA	-5	True	AATAAA	-29	NA	152262433	152246485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_152247035_152247504_152247647_152259012_152259149_152259449_152259532_152262209
ENSMUST00000015171.11	chr8	-	2557	14	FSM	ENSMUSG00000015027.12	ENSMUST00000015171.11	2557	14	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_10	4.2966892442366	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTATCCTGGTCTTTTGTT	NA	False	NA	-4	True	NA	NA	NA	123338202	123304980	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_123305937_123307789_123307908_123311650_123311773_123318176_123318280_123318939_123319077_123322504_123322609_123325258_123325399_123325777_123325906_123326011_123326079_123327213_123327358_123330116_123330220_123330877_123330953_123331878_123332003_123337966
ENSMUST00000015236.4	chr2	+	722	5	FSM	ENSMUSG00000015092.10	ENSMUST00000015236.4	722	5	0	0	0	0	multi-exon	FALSE	canonical	3	2396	junction_4	232.166965781095	22571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCTCCTGGATTTTTCCT	NA	False	NA	17	True	NA	NA	NA	25447858	25452094	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_25448042_25450162_25450215_25450551_25450713_25450980_25451075_25451862
ENSMUST00000015239.10	chr2	+	2388	9	FSM	ENSMUSG00000015095.13	ENSMUST00000015239.10	2388	9	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	35.5176012703561	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCATCTAGTCTGTTTG	NA	False	NA	16	True	AATAAA	-16	NA	25390761	25395483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_25390899_25391947_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
ENSMUST00000015256.15	chr6	-	3067	18	FSM	ENSMUSG00000015112.16	ENSMUST00000015256.15	3067	18	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_9	125.074538329783	994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	20	False	6217138	-3	True	AATAAA	-16	NA	6217118	6041217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
ENSMUST00000015361.11	chrX	+	1544	5	FSM	ENSMUSG00000015217.12	ENSMUST00000015361.11	1544	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	352.483687565822	4141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599546	70604282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_70599615_70601662_70601814_70602038_70602179_70602703_70602879_70603272
ENSMUST00000015391.10	chr4	+	1552	6	FSM	ENSMUSG00000015247.11	ENSMUST00000015391.10	1552	6	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_3	32.5785205311721	1620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTATCAAGTGAGTCTT	NA	False	NA	10	True	AATAAA	-21	NA	53011879	53022060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_53012048_53015014_53015226_53017048_53017208_53020181_53020332_53021110_53021198_53021283
ENSMUST00000015433.4	chrX	-	761	3	FSM	ENSMUSG00000015289.5	ENSMUST00000015433.4	761	3	0	0	0	0	multi-exon	FALSE	canonical	3	1433	junction_2	31	18729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGCCTCTAAATTTTC	4493	False	NA	-18	True	AATAAA	-30	NA	73397224	73395766	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_73396105_73396479_73396609_73396930
ENSMUST00000015435.11	chrX	+	2666	11	FSM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	0	0	0	0	multi-exon	FALSE	canonical	3	553	junction_5	84.5884152824723	911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	5948	False	NA	15	True	AATAAA	-16	NA	73348603	73355468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
ENSMUST00000015456.10	chr10	+	1284	4	FSM	ENSMUSG00000015312.10	ENSMUST00000015456.10	1284	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_3	10.2089285540757	1617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTCTCGTTGTATTTTA	248	False	NA	5	True	AATAAA	-14	NA	80765906	80768038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80766194_80766281_80766384_80766862_80767086_80767366
ENSMUST00000015467.9	chr3	+	2364	4	FSM	ENSMUSG00000052310.10	ENSMUST00000015467.9	2364	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	8.60232526704263	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTATGGTATCTGATTCT	NA	False	NA	-1	True	AATAAA	-16	NA	90155478	90160919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_90155567_90156252_90156471_90156632_90156764_90158992
ENSMUST00000015605.15	chr17	+	2566	18	FSM	ENSMUSG00000015461.16	ENSMUST00000015605.15	2566	18	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_9	22.8588265568706	595	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCGGCCACCTTCCTAGTG	9741	False	NA	11	True	AATAAA	-24	NA	34866119	34874048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34866291_34866633_34866714_34867192_34867272_34867550_34867643_34868091_34868228_34869274_34869361_34869473_34869610_34869693_34869826_34869959_34870094_34870535_34870722_34870803_34870896_34871621_34871802_34871962_34872071_34872187_34872270_34872475_34872547_34872677_34872790_34872894_34872980_34873444
ENSMUST00000015666.17	chr3	+	2603	22	FSM	ENSMUSG00000015522.19	ENSMUST00000015666.17	2603	22	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_4	103.930445082112	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAGGATCCTCTGAAATT	NA	False	NA	2	True	ATTAAA	-15	NA	95341738	95402882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95372936_95372949_95377514_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
ENSMUST00000015680.11	chr13	+	1152	7	FSM	ENSMUSG00000015536.15	ENSMUST00000015680.11	1152	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	16.9844700306551	728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATAGATCCTGTCTCC	NA	False	NA	NA	False	AATAAA	-18	NA	114954812	114965259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746_114961898_114962693_114962818_114964824
ENSMUST00000015719.16	chr17	+	823	4	FSM	ENSMUSG00000015575.16	ENSMUST00000015719.16	823	4	0	0	0	0	multi-exon	FALSE	canonical	3	1134	junction_3	173.829418300432	12647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCTCCAGTGTTTAAAA	NA	False	NA	37	True	AATAAA	-25	NA	26895343	26918621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26895553_26901651_26901700_26914328_26914459_26918185
ENSMUST00000015725.16	chr17	+	1098	6	FSM	ENSMUSG00000024191.16	ENSMUST00000015725.16	1098	6	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	9.09945053286186	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGTGGTAAATGCTTAAC	1994	False	NA	15	True	AATAAA	-15	NA	27000039	27011495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_27000151_27002418_27002512_27005670_27005763_27008668_27008771_27009899_27010019_27010914
ENSMUST00000015796.9	chr5	-	1230	5	FSM	ENSMUSG00000015652.10	ENSMUST00000015796.9	1230	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	6.38357266740185	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTATCACAACTGTTTA	NA	False	NA	NA	False	AATAAA	-26	NA	5799326	5786316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_5786674_5789795_5789961_5790349_5790863_5792825_5792941_5799246
ENSMUST00000015800.16	chr9	+	2394	9	FSM	ENSMUSG00000015656.18	ENSMUST00000015800.16	2394	9	0	0	0	0	multi-exon	FALSE	canonical	3	3928	junction_3	6050.21958150074	76529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2167	False	NA	10	True	AATAAA	-20	NA	40712279	40716496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
ENSMUST00000015812.12	chrX	-	1626	7	FSM	ENSMUSG00000015668.14	ENSMUST00000015812.12	1626	7	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_6	98.6728601659713	2572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTACTGCTTGAATATAA	NA	False	NA	-7	True	AATAAA	-14	NA	99670174	99666491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669491
ENSMUST00000015858.12	chr3	+	2216	11	FSM	ENSMUSG00000015714.12	ENSMUST00000015858.12	2216	11	0	0	0	0	multi-exon	FALSE	canonical	3	406	junction_10	31.9782738746168	1033	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGGGTTAGTTTTTTTCT	4318	False	NA	45	True	AATAAA	-31	NA	95222394	95230910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228559_95228646_95228698_95228885_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
ENSMUST00000015893.13	chr3	+	1381	7	FSM	ENSMUSG00000015749.13	ENSMUST00000015893.13	1381	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_5	557.690301352123	5122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGGTGTAGTTTGGTGC	NA	False	NA	12	True	ATTAAA	-15	NA	95836589	95852877	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845316_95851618_95851674_95852491
ENSMUST00000015903.12	chr14	-	1538	5	FSM	ENSMUSG00000015759.12	ENSMUST00000015903.12	1538	5	0	0	0	0	multi-exon	FALSE	canonical	3	505	junction_4	16.1322658049017	5076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTACATTGTCTATTTTC	NA	False	NA	NA	False	AATAAA	-31	NA	47025868	47013023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_47014007_47016345_47016490_47017569_47017683_47021568_47021638_47025639
ENSMUST00000015934.13	chr2	-	1173	9	FSM	ENSMUSG00000015790.17	ENSMUST00000015934.13	1173	9	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_4	27.1834048639974	3556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	-5	True	AATAAA	-19	NA	26806542	26803394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
ENSMUST00000015950.12	chr5	-	1380	7	FSM	ENSMUSG00000015806.13	ENSMUST00000015950.12	1380	7	0	0	0	0	multi-exon	FALSE	canonical	3	819	junction_4	94.8542741964395	6654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	False	NA	-19	True	AATAAA	-15	NA	45607578	45591394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607348
ENSMUST00000016033.9	chr10	+	2029	19	FSM	ENSMUSG00000015889.9	ENSMUST00000016033.9	2029	19	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_6	42.1416262935671	651	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAAAGTGTCATTTTTG	NA	False	NA	21	True	AATACA	-20	NA	93289272	93320736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318111_93318195_93318823_93318929_93320524
ENSMUST00000016087.4	chr3	-	729	2	FSM	ENSMUSG00000015943.12	ENSMUST00000016087.4	729	2	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	0	4036	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACGGTGCTCTTAATAC	NA	False	NA	NA	False	AATAAA	-21	NA	96104902	96103903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_96104596_96104865
ENSMUST00000016105.9	chr1	-	2771	13	FSM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_9	76.3848079718008	1597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCCTAAAAGACCAATGGC	NA	False	NA	NA	False	AATAAA	-16	NA	177624077	177590527	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
ENSMUST00000016115.6	chr14	+	2119	13	FSM	ENSMUSG00000015971.6	ENSMUST00000016115.6	2119	13	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_4	26.6816364232448	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACACTGATTTGAGATAAT	NA	False	NA	21	True	ATTAAA	-25	NA	29700293	29715176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917
ENSMUST00000016144.12	chr13	+	1598	6	FSM	ENSMUSG00000021759.15	ENSMUST00000016144.12	1598	6	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_2	66.7730484551964	958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTTGTAGTCAGTTGCAA	9637	False	NA	14	True	AATAAA	-29	NA	112937325	113004428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_112937801_112971392_112971548_112993279_112993561_112996177_112996236_113003329_113003507_113003976
ENSMUST00000016309.16	chr1	-	2378	12	FSM	ENSMUSG00000006301.18	ENSMUST00000016309.16	2378	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	38.8406364690682	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGAGTTGCTGTGGCTT	NA	False	NA	-6	True	AATAAA	-22	NA	74343564	74327405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066_74333162_74334356_74334599_74343281
ENSMUST00000016396.8	chr2	-	421	3	FSM	ENSMUSG00000016252.8	ENSMUST00000016396.8	421	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1326.5	41518	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTTTGTTTCTGTTCTA	NA	False	NA	-4	True	AATAAA	-22	NA	174305898	174302864	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_174303015_174304292_174304423_174305757
ENSMUST00000016400.9	chr2	-	1441	6	FSM	ENSMUSG00000016256.11	ENSMUST00000016400.9	1441	6	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_4	13.5292276202302	4316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTACTTTATTTACA	5329	False	NA	0	True	AGTAAA	-17	NA	174280832	174269285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_174269776_174270370_174270537_174270848_174271000_174275280_174275461_174279957_174280122_174280542
ENSMUST00000016401.15	chr2	-	1553	6	FSM	ENSMUSG00000016257.16	ENSMUST00000016401.15	1553	6	0	0	0	0	multi-exon	FALSE	canonical	3	812	junction_2	54.463198583998	4000	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCAGCTCTTCCCAT	NA	False	NA	-4	True	AATAAA	-45	NA	174314874	174306859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174311129_174311299_174314624
ENSMUST00000016452.11	chrX	+	1732	6	FSM	ENSMUSG00000016308.13	ENSMUST00000016452.11	1732	6	0	0	0	0	multi-exon	FALSE	canonical	3	837	junction_1	46.7435557055729	14641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTTCACACTTTTATTA	NA	False	NA	7	True	AATAAA	-16	NA	36137947	36147875	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_36138183_36138363_36138445_36138819_36138846_36145309_36145400_36146251_36146341_36146664
ENSMUST00000016463.4	chrX	+	1240	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	22381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	29	True	AATAAA	-31	NA	36059303	36062460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
ENSMUST00000016571.8	chrX	-	419	3	FSM	ENSMUSG00000016427.8	ENSMUST00000016571.8	419	3	0	0	0	0	multi-exon	FALSE	canonical	3	2951	junction_1	110	40977	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTTTTATTTTTATGAA	2312	False	NA	-1	True	AATAAA	-20	NA	36454816	36451240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_36451395_36453526_36453617_36454641
ENSMUST00000016678.14	chrX	-	1769	9	FSM	ENSMUSG00000016534.16	ENSMUST00000016678.14	1769	9	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	278.250982702667	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTGTTTCAATTTGTAA	NA	False	NA	-1	True	AATAAA	-18	NA	37545331	37493938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_37494449_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
ENSMUST00000016703.8	chr11	-	1993	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	0	0	0	0	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	48386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTAGCCTTGGCCACAA	NA	False	NA	9	True	AATAAA	-39	NA	115915330	115912786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
ENSMUST00000016781.8	chr15	+	1013	7	Antisense	novelGene_ENSMUSG00000016637.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1016	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCTCCATATTGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	78043662	78058307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr15_+_78043909_78048389_78048500_78049346_78049465_78050173_78050234_78051269_78051330_78052112_78052193_78057968
ENSMUST00000016897.12	chr15	-	2060	12	FSM	ENSMUSG00000022442.17	ENSMUST00000016897.12	2060	12	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_11	7.21110255092798	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACTTTATCTTATTATT	NA	False	NA	NA	False	NA	NA	NA	83395094	83367969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_83368515_83373669_83373834_83376743_83376831_83380472_83380617_83381520_83381630_83382352_83382488_83384122_83384304_83386281_83386491_83389450_83389568_83389683_83389845_83390480_83390529_83394934
ENSMUST00000016902.5	chr15	+	942	5	FSM	ENSMUSG00000016758.5	ENSMUST00000016902.5	942	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	7.58287544405155	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCCTTAGGTCGTCCTCT	NA	False	NA	NA	False	AATAAA	-16	NA	83411062	83428835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_83411138_83425495_83425644_83427265_83427365_83427780_83427899_83428333
ENSMUST00000016977.15	chr5	-	638	6	Antisense	novelGene_ENSMUSG00000104761.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16345	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCGCGCTTCCCGGGCCG	NA	False	NA	NA	False	NA	NA	NA	100952337	100946492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr5_-_100946727_100947417_100947480_100949773_100949858_100950918_100950977_100951835_100951896_100952197
ENSMUST00000017153.4	chr2	-	2458	5	FSM	ENSMUSG00000017009.4	ENSMUST00000017153.4	2458	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	6.36396103067893	1157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTCAGTTTTATTTTTG	NA	False	NA	47	True	AATAAA	-24	NA	164285106	164266166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_164268158_164270812_164271009_164271599_164271647_164273106_164273234_164285009
ENSMUST00000017188.14	chr13	-	1504	8	FSM	ENSMUSG00000060147.16	ENSMUST00000017188.14	1504	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_7	171.60728779539	2244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8459	False	NA	-7	True	AATAAA	-19	NA	34119979	34101909	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119609_34119778_34119904
ENSMUST00000017270.8	chr11	-	1542	8	FSM	ENSMUSG00000053654.8	ENSMUST00000017270.8	1542	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	18.9510648023497	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGAATTCATCATTTGT	NA	False	NA	-11	True	AATAAA	-18	NA	100160697	100153712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425_100156588_100157760_100157918_100158025_100158109_100160235
ENSMUST00000017288.9	chr2	-	2828	5	FSM	ENSMUSG00000017144.9	ENSMUST00000017288.9	2828	5	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_2	50.2792203599061	1566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGGGATGTTTTCTGC	NA	False	NA	-9	True	AATAAA	-16	NA	51039123	51020449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_51022558_51024094_51024230_51027147_51027258_51038235_51038324_51038736
ENSMUST00000017354.13	chr11	-	3410	26	FSM	ENSMUSG00000017210.15	ENSMUST00000017354.13	3410	26	0	0	0	0	multi-exon	TRUE	canonical	3	102	junction_19	25.7353919729232	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTGTGTGGGGACAGTT	NA	False	NA	-2	True	AATAAA	-23	NA	98620261	98595416	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610_98619814_98620197
ENSMUST00000017365.15	chr11	+	2148	12	FSM	ENSMUSG00000017221.15	ENSMUST00000017365.15	2148	12	0	0	0	0	multi-exon	FALSE	canonical	3	1019	junction_3	95.9435956889203	10690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTGTGCACGGTGTCAG	NA	False	NA	16	True	AATAAA	-14	NA	98573379	98586805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581480_98581741_98581846_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
ENSMUST00000017408.14	chr4	+	2790	25	FSM	ENSMUSG00000017264.17	ENSMUST00000017408.14	2790	25	0	0	0	0	multi-exon	TRUE	canonical	3	466	junction_4	49.4747234847138	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	NA	False	NA	NA	False	ATTAAA	-22	NA	148642885	148666858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
ENSMUST00000017451.7	chr2	-	1055	6	FSM	ENSMUSG00000017307.17	ENSMUST00000017451.7	1055	6	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_1	116.717779279765	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCTGACCTTTAATAGAA	8166	False	NA	-1	True	AATAAA	-19	NA	164646802	164634687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_164634931_164637001_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
ENSMUST00000017530.4	chr11	-	2078	7	FSM	ENSMUSG00000017386.11	ENSMUST00000017530.4	2078	7	0	0	0	0	multi-exon	FALSE	canonical	3	457	junction_4	31.7525152109596	668	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGCCTGTCTCCTCCCA	NA	False	NA	1	True	NA	NA	NA	78056415	78050225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_78051375_78051618_78051775_78051858_78052021_78052112_78052275_78052343_78052449_78053207_78053260_78056123
ENSMUST00000017548.7	chr11	+	751	6	FSM	ENSMUSG00000017404.13	ENSMUST00000017548.7	751	6	0	0	0	0	multi-exon	FALSE	canonical	3	9068	junction_1	2898.60244945732	106407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917749	97921318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
ENSMUST00000017549.13	chr11	-	2809	15	FSM	ENSMUSG00000017405.15	ENSMUST00000017549.13	2809	15	0	0	0	0	multi-exon	FALSE	canonical	1	11	junction_10	13.5103890486136	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCTTATGATCTCTT	6248	False	NA	0	True	AATAAA	-14	NA	78067501	78056931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78061621_78061698_78061779_78061915_78062125_78062936_78063069_78063276_78063510_78063750_78063957_78067385
ENSMUST00000017567.14	chr11	+	2245	11	FSM	ENSMUSG00000017421.19	ENSMUST00000017567.14	2245	11	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_8	108.208317610062	1942	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGATACATGATTGAAT	NA	False	NA	130	True	AATAAA	-18	NA	80274128	80287074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215
ENSMUST00000017572.14	chr11	+	2848	14	FSM	ENSMUSG00000017428.17	ENSMUST00000017572.14	2848	14	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_5	68.6804624122448	7662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCCTTTCTTGAGTGCT	NA	False	NA	16	True	AATAAA	-20	NA	80319450	80364074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80362535
ENSMUST00000017604.10	chr8	-	744	6	FSM	ENSMUSG00000006519.12	ENSMUST00000017604.10	744	6	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_1	96.6531944635044	11039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGGACAAGAAATTCTCCAT	NA	False	NA	NA	False	AATAAA	-18	NA	123159669	123151514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_123151827_123152924_123153007_123153674_123153759_123153967_123154043_123154393_123154464_123159548
ENSMUST00000017808.14	chr2	-	1843	11	FSM	ENSMUSG00000017664.17	ENSMUST00000017808.14	1843	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_9	88.3464204141854	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5702	False	NA	-34	True	AATAAA	-18	NA	165129747	165118473	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125328_165125447_165125521_165129703
ENSMUST00000017821.12	chr11	-	2476	9	FSM	ENSMUSG00000017677.12	ENSMUST00000017821.12	2476	9	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_4	86.5338625914734	1004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTCATGGGTTGCATT	975	False	NA	-8	True	ATTAAA	-28	NA	79145497	79130197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
ENSMUST00000017831.16	chr11	+	3029	20	FSM	ENSMUSG00000017686.18	ENSMUST00000017831.16	3029	20	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_18	134.011803341732	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACCTTTTCAAGTATTTA	NA	False	NA	34	True	AATAAA	-45	NA	80099944	80157593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80146687_80146784_80156567
ENSMUST00000017839.3	chr11	+	1984	5	FSM	ENSMUSG00000020707.7	ENSMUST00000017839.3	1984	5	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	3.96074487943871	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGAGTTCATTGGGT	NA	False	NA	34	True	NA	NA	NA	80074676	80090583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_80075082_80080049_80080194_80084711_80084875_80087698_80087774_80089386
ENSMUST00000017859.10	chr11	+	2197	10	FSM	ENSMUSG00000017715.12	ENSMUST00000017859.10	2197	10	0	0	0	0	multi-exon	TRUE	canonical	1	46	junction_7	99.2782596518803	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117877710	117914837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_117877840_117888266_117888457_117891024_117891103_117892441_117892542_117893176_117893367_117894166_117894346_117896195_117896718_117905472_117905549_117910432_117910559_117914230
ENSMUST00000017867.10	chr2	+	849	5	FSM	ENSMUSG00000017723.12	ENSMUST00000017867.10	849	5	0	0	0	0	multi-exon	FALSE	canonical	3	478	junction_3	30.4251129825347	6847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	113	False	NA	26	True	AATAAA	-32	NA	164404498	164410430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_164404725_164405227_164405372_164405976_164406133_164407711_164407859_164410254
ENSMUST00000017945.15	chr11	+	1965	8	FSM	ENSMUSG00000017801.16	ENSMUST00000017945.15	1965	8	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_1	39.4052726193346	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTTAAGTCCTTGT	8246	False	NA	18	True	AATAAA	-22	NA	100978125	100983033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_100978356_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
ENSMUST00000017946.6	chr11	-	3165	9	FSM	ENSMUSG00000017802.15	ENSMUST00000017946.6	3165	9	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_5	11.6162601554889	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTTCGTTGTGTACT	9795	False	NA	1	True	AATAAA	-29	NA	101010719	100987338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100989447_100989833_100989967_100990498_100990582_100991747_100991886_100992831_100992917_100993708_100993836_100994715_100994747_100997132_100997240_101010366
ENSMUST00000017981.10	chr11	+	2097	4	FSM	ENSMUSG00000017837.13	ENSMUST00000017981.10	2097	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_1	10.0332779621949	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCCGTCCCCTACCCCT	NA	False	NA	17	True	AATAAA	-24	NA	100513701	100518433	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_100513835_100515017_100515126_100515768_100516011_100516819
ENSMUST00000018002.13	chr2	+	2248	13	FSM	ENSMUSG00000017858.13	ENSMUST00000018002.13	2248	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	53.5787971122906	1589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162859273	162888061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_162859454_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
ENSMUST00000018143.16	chr2	+	2714	21	FSM	ENSMUSG00000017999.17	ENSMUST00000018143.16	2714	21	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_12	71.8993045863449	2273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCTGTTGTCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	166857112	166876867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876465_166876558
ENSMUST00000018295.14	chr15	+	1977	13	FSM	ENSMUSG00000068206.14	ENSMUST00000018295.14	1977	13	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_9	26.1878894826512	704	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGGCTCCTTGCAATG	4383	False	NA	18	True	AATAAA	-18	NA	79113581	79133666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_79113771_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132920
ENSMUST00000018311.5	chr11	+	2070	15	FSM	ENSMUSG00000018167.11	ENSMUST00000018311.5	2070	15	0	0	0	0	multi-exon	TRUE	canonical	3	120	junction_11	11.573412528335	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAAATGCAGGGTGTG	875	False	NA	-2	True	AATAAA	-1	NA	98249193	98271925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_98249335_98262895_98263169_98265905_98265984_98266301_98266380_98266500_98266555_98267315_98267434_98267577_98267677_98267890_98267947_98268275_98268369_98268981_98269045_98269160_98269257_98269563_98269644_98269719_98269825_98270798_98270893_98271283
ENSMUST00000018313.6	chr15	-	1865	8	FSM	ENSMUSG00000018169.13	ENSMUST00000018313.6	1865	8	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_5	11.4749060731561	404	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTCCAGCTTCCTGCT	NA	False	NA	-4	True	ATTAAA	-17	NA	78657675	78640081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_78640845_78641496_78641583_78643392_78643559_78645005_78645092_78648514_78648669_78651017_78651121_78651341_78651391_78657217
ENSMUST00000018333.13	chr1	+	1845	11	FSM	ENSMUSG00000018189.13	ENSMUST00000018333.13	1845	11	0	0	0	0	multi-exon	FALSE	canonical	3	576	junction_8	227.497274708951	6453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTTTGTTACCTAATTC	NA	False	NA	NA	False	ATTAAA	-13	NA	143653018	143683204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143682421
ENSMUST00000018383.10	chr11	+	1267	4	FSM	ENSMUSG00000018239.10	ENSMUST00000018383.10	1267	4	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_3	30.2691628926573	1236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGATGTAAGTTTCAAGT	NA	False	NA	14	True	TATAAA	-27	NA	53215505	53224128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_53215569_53218095_53218255_53221513_53221559_53223128
ENSMUST00000018430.7	chr11	+	798	6	FSM	ENSMUSG00000018286.7	ENSMUST00000018430.7	798	6	0	0	0	0	multi-exon	FALSE	canonical	3	5742	junction_5	304.149305440601	53913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACGTTTCTGTGTGAAGG	NA	False	NA	23	True	AATAAA	-13	NA	70416211	70418475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70416322_70416710_70416779_70417119_70417252_70417369_70417500_70418004_70418150_70418262
ENSMUST00000018431.13	chr11	-	1159	7	FSM	ENSMUSG00000018287.13	ENSMUST00000018431.13	1159	7	0	0	0	0	multi-exon	FALSE	canonical	3	730	junction_3	39.5179284207392	5942	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGTGGATACTAGTCC	NA	False	NA	-9	True	AATAAA	-33	NA	70560242	70554596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70555047_70555145_70555303_70555403_70555494_70555608_70555694_70555813_70555903_70556122_70556191_70560022
ENSMUST00000018437.3	chr11	-	861	3	FSM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	0	0	0	0	multi-exon	FALSE	canonical	3	9692	junction_2	172	23782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGACCTGTGTTGGTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	70545470	70542675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70543048_70543612_70543806_70545174
ENSMUST00000018470.10	chr2	+	3013	6	FSM	ENSMUSG00000018326.10	ENSMUST00000018470.10	3013	6	0	0	0	0	multi-exon	FALSE	canonical	3	1292	junction_3	139.446620611616	2046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTGTGGATTGATGTG	NA	False	NA	21	True	AATAAA	-16	NA	163836879	163860508	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_163837286_163853521_163853825_163855925_163856050_163857150_163857315_163858022_163858119_163858588
ENSMUST00000018476.14	chr15	-	2914	11	FSM	ENSMUSG00000022329.16	ENSMUST00000018476.14	2914	11	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_2	35.5343495789637	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCGTTGTTGTTATTGT	NA	False	NA	2	True	AATAAA	-21	NA	35155952	34875641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073368_35099579_35099695_35114674_35114804_35115710_35115792_35155672
ENSMUST00000018506.13	chr11	-	2054	11	FSM	ENSMUSG00000018362.15	ENSMUST00000018506.13	2054	11	0	0	0	0	multi-exon	FALSE	canonical	3	2002	junction_5	417.039386629129	3276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTTTTCTTAATTGA	9666	False	NA	NA	False	AATAAA	-27	NA	106890367	106879454	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106890184
ENSMUST00000018516.11	chr11	+	2696	20	FSM	ENSMUSG00000018372.14	ENSMUST00000018516.11	2696	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	15.3330523078346	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTTACTGCTTTTGAAT	5119	False	NA	10	True	AATAAA	-12	NA	106680100	106709679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_106680204_106681556_106681686_106683302_106683411_106686948_106687060_106690869_106690970_106692288_106692405_106695818_106695948_106697061_106697256_106700017_106700128_106700453_106700584_106702021_106702176_106703221_106703362_106704586_106704689_106705429_106705563_106706293_106706464_106706559_106706635_106707478_106707632_106708659_106708807_106709021_106709094_106709359
ENSMUST00000018547.9	chr11	-	2478	15	FSM	ENSMUSG00000020530.15	ENSMUST00000018547.9	2478	15	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	203.856892581686	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCATTCGTTTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	84761472	84723686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84745080_84745207_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761463
ENSMUST00000018549.8	chr11	-	2477	5	FSM	ENSMUSG00000018405.8	ENSMUST00000018549.8	2477	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	44.51404272811	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCTGGAGTTGATTTGT	NA	False	NA	-4	True	AATAAA	-23	NA	84710341	84703886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_84705338_84705514_84705635_84705733_84705867_84709425_84709520_84709662
ENSMUST00000018568.4	chr11	+	1788	13	FSM	ENSMUSG00000020537.10	ENSMUST00000018568.4	1788	13	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_10	43.4117879536576	1489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGGAACTTGTGTTTCT	NA	False	NA	40	True	NA	NA	NA	60345416	60359580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_60345570_60347376_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
ENSMUST00000018572.11	chr11	-	3758	11	FSM	ENSMUSG00000018428.16	ENSMUST00000018572.11	3758	11	0	0	0	0	multi-exon	FALSE	canonical	3	816	junction_2	49.6891336209437	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGTCCATTTTTTCTT	NA	False	NA	92	True	TATAAA	-7	NA	88755412	88721617	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
ENSMUST00000018593.10	chr11	+	1100	7	FSM	ENSMUSG00000018449.13	ENSMUST00000018593.10	1100	7	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_4	48.3922055248111	2354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAACTTTCCTGGAGATT	NA	False	NA	45	True	NA	NA	NA	70861038	70868659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70864959_70865725_70865867_70868483
ENSMUST00000018614.3	chr11	+	2538	14	FSM	ENSMUSG00000018470.9	ENSMUST00000018614.3	2538	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	7.85293824331087	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACCACGTCTGAAATTGCA	NA	False	NA	11	True	AATAAA	-20	NA	69217083	69223868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69217750_69218945_69218990_69219076_69219115_69219334_69219415_69220675_69220721_69220808_69220854_69221008_69221053_69221222_69221310_69221565_69221652_69221876_69221998_69222087_69222183_69222285_69222407_69222561_69222651_69222891
ENSMUST00000018644.3	chr11	+	1845	2	FSM	ENSMUSG00000018500.3	ENSMUST00000018644.3	1845	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACGCACTGGCTTCTTGCA	8723	False	NA	NA	False	AATAAA	-20	NA	62139809	62157279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_62140263_62155887
ENSMUST00000018685.9	chr11	-	3105	10	FSM	ENSMUSG00000018541.11	ENSMUST00000018685.9	3105	10	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_2	12.1969435556112	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTAGAGCGATCTAC	7435	False	NA	-21	True	AATAAA	-19	NA	97657382	97636440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_97638296_97638786_97638949_97641697_97641788_97643395_97643590_97644041_97644106_97644730_97644859_97646976_97647047_97648398_97648636_97654034_97654208_97657250
ENSMUST00000018713.13	chr11	+	1335	4	FSM	ENSMUSG00000018569.13	ENSMUST00000018713.13	1335	4	0	0	0	0	multi-exon	TRUE	canonical	3	113	junction_1	5.71547606649408	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTTCCAGGCCGCTTTT	8743	False	NA	9	True	AATAAA	-19	NA	69856221	69858711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69856976_69857768_69857934_69858045_69858131_69858380
ENSMUST00000018714.13	chr11	-	1485	8	FSM	ENSMUSG00000018570.18	ENSMUST00000018714.13	1485	8	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_7	3.28260722659316	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTGCTGGGAGCTGCG	9745	False	NA	-13	True	AATAAA	-15	NA	69791764	69788188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69788319_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790637_69791128
ENSMUST00000018716.10	chr11	+	2006	5	FSM	ENSMUSG00000018572.11	ENSMUST00000018716.10	2006	5	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_3	63.9193828192982	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCTTGTCCTATTTGG	2317	False	NA	16	True	AATAAA	-26	NA	69886602	69890835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889126_69889959_69890063
ENSMUST00000018737.13	chr11	-	2300	10	FSM	ENSMUSG00000018593.14	ENSMUST00000018737.13	2300	10	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_9	66.8521493786341	2738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGTCCCGGGTGATGG	3676	False	NA	-2	True	AATAAA	-22	NA	55310906	55285325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613
ENSMUST00000018743.5	chr11	+	2522	4	FSM	ENSMUSG00000018599.6	ENSMUST00000018743.5	2522	4	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	26.4701089281224	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTGTAATTCTTGCTG	NA	False	NA	14	True	AATAAA	-17	NA	60619223	60623777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_60619394_60621108_60621262_60621455_60621619_60621741
ENSMUST00000018744.15	chr11	-	2858	12	FSM	ENSMUSG00000020534.15	ENSMUST00000018744.15	2858	12	0	0	0	0	multi-exon	FALSE	canonical	3	983	junction_2	78.1211180853749	2365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCCTCATATTATTTATT	NA	False	NA	-8	True	AATAAA	-19	NA	60702091	60678929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
ENSMUST00000018755.10	chr11	-	1182	7	FSM	ENSMUSG00000020388.13	ENSMUST00000018755.10	1182	7	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_5	18.9245578254523	841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTAGTGTCTGGCCTGA	NA	False	NA	-2	True	AATAAA	-22	NA	53959840	53945753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_53946066_53946182_53946301_53946615_53946780_53946968_53947151_53950763_53950843_53954460_53954613_53959665
ENSMUST00000018792.12	chr11	-	1571	4	FSM	ENSMUSG00000018648.16	ENSMUST00000018792.12	1571	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	40.077702307171	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTTATTAATCATTTTG	NA	False	NA	-14	True	AATAAA	-15	NA	83959627	83938866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_83940137_83941657_83941747_83959306_83959407_83959515
ENSMUST00000018795.13	chr11	+	2151	16	Antisense	novelGene_ENSMUSG00000018651.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2378	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCGCGCCGCGGCCTGCGTG	5297	False	NA	NA	False	NA	NA	NA	83969745	84020426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr11_+_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813_84017922_84020362
ENSMUST00000018803.12	chr11	-	1994	7	FSM	ENSMUSG00000018659.13	ENSMUST00000018803.12	1994	7	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_4	10.434983894999	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTTAACTTGATTCCAT	NA	False	NA	-2	True	AATAAA	-25	NA	96834812	96828650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_96829910_96830080_96830152_96830473_96830603_96830841_96830896_96831681_96831782_96833235_96833361_96834556
ENSMUST00000018816.14	chr11	+	930	9	FSM	ENSMUSG00000018672.16	ENSMUST00000018816.14	930	9	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_8	11.8420595759353	456	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCCTTTCTTGACTTTG	775	False	NA	11	True	AATAAA	-22	NA	96740701	96752029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_96740823_96741498_96741568_96744260_96744343_96744883_96744976_96745409_96745466_96746081_96746160_96747497_96747550_96748378_96748418_96751688
ENSMUST00000018841.3	chr11	-	1822	13	FSM	ENSMUSG00000018697.15	ENSMUST00000018841.3	1822	13	0	0	0	0	multi-exon	TRUE	canonical	3	481	junction_8	26.3136793744665	809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTCTTCACTGTGAGT	NA	False	NA	0	True	AATAAA	-44	NA	84404348	84313680	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_84313846_84333391_84333464_84336452_84336534_84339945_84340014_84358286_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84400484_84400623_84401024_84401244_84402308_84402405_84402966_84403156_84404117
ENSMUST00000018871.8	chr11	-	1235	7	FSM	ENSMUSG00000018727.20	ENSMUST00000018871.8	1235	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	88.6372131531422	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600843	113588997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_113589493_113590661_113590809_113593238_113593336_113594096_113594193_113597242_113597396_113599629_113599681_113600647
ENSMUST00000018880.14	chr11	-	2382	9	FSM	ENSMUSG00000018736.15	ENSMUST00000018880.14	2382	9	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_5	15.9530561335438	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCGAGATTGCTTTATTT	NA	False	NA	NA	False	AATAAA	-24	NA	68743961	68712259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_68713492_68720740_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
ENSMUST00000018905.12	chr11	-	1321	7	FSM	ENSMUSG00000018761.15	ENSMUST00000018905.12	1321	7	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_4	37.1427426738163	3848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTAGTGTGCATTCT	6761	False	NA	-4	True	AATAAA	-33	NA	69553468	69547522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69548848_69549391_69549525_69549636_69549703_69553294
ENSMUST00000018914.3	chr2	-	714	5	FSM	ENSMUSG00000018770.10	ENSMUST00000018914.3	714	5	0	0	0	0	multi-exon	FALSE	canonical	3	2058	junction_4	989.165146727279	35621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	-21	True	ATTAAA	-15	NA	73741670	73738790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741595
ENSMUST00000018918.12	chr11	-	1230	6	FSM	ENSMUSG00000018774.14	ENSMUST00000018918.12	1230	6	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_5	17.4653943556966	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTTCTTTCCTCATTAA	3250	False	NA	-1	True	AATAAA	-19	NA	69556979	69555038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69555331_69555576_69555748_69555860_69555940_69556072_69556193_69556328_69556763_69556845
ENSMUST00000018965.4	chr19	-	1044	3	FSM	ENSMUSG00000018821.4	ENSMUST00000018965.4	1044	3	0	0	0	0	multi-exon	FALSE	canonical	3	851	junction_1	12	5204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGTCAGAGTGTGCTAC	NA	False	NA	-5	True	AATAAA	-15	NA	42117498	42111711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_42112288_42113186_42113466_42117309
ENSMUST00000018992.4	chr11	-	2109	15	FSM	ENSMUSG00000018848.5	ENSMUST00000018992.4	2109	15	0	0	0	0	multi-exon	FALSE	canonical	3	825	junction_11	73.3093807511866	3986	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCAGGTGTGTTTCTTTGT	NA	False	NA	-1	True	AGTAAA	-17	NA	35725333	35699207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
ENSMUST00000019026.10	chr11	+	2431	8	FSM	ENSMUSG00000018882.13	ENSMUST00000019026.10	2431	8	0	0	0	0	multi-exon	FALSE	canonical	3	2561	junction_3	172.211545276531	4138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACCCAGCTTAAAATTACT	NA	False	NA	14	True	NA	NA	NA	97206541	97220746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607_97217758_97218911_97219086_97219307
ENSMUST00000019043.13	chr11	+	2069	10	FSM	ENSMUSG00000018899.18	ENSMUST00000019043.13	2069	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	21.2573879677132	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGTGTGGCTTTTTATTTA	NA	False	NA	10	True	TATAAA	-17	NA	53661320	53668149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_53661518_53662109_53662202_53663664_53663765_53664481_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
ENSMUST00000019050.12	chr11	+	2230	16	FSM	ENSMUSG00000018906.15	ENSMUST00000019050.12	2230	16	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_12	14.0816665680357	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAATAGCCTTATTTT	NA	False	NA	15	True	AATAAA	-17	NA	53991788	54022478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001909_54002248_54002401_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017171_54017238_54019873_54019943_54020291_54020389_54022015
ENSMUST00000019063.3	chr11	+	1000	5	FSM	ENSMUSG00000018919.11	ENSMUST00000019063.3	1000	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	5.95818764390649	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAATGTGCCAGTGATGAA	NA	False	NA	NA	False	AATAAA	-20	NA	70396069	70402004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70396331_70400619_70400701_70401040_70401178_70401394_70401579_70401667
ENSMUST00000019065.10	chr11	-	3435	17	FSM	ENSMUSG00000018921.12	ENSMUST00000019065.10	3435	17	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_9	48.6591701917532	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGTGCTGCTTTGGCT	NA	False	NA	-27	True	AATAAA	-13	NA	70300854	70283708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70283849_70284587_70286019_70286127_70286335_70286485_70286542_70287111_70287272_70287381_70287530_70287643_70287761_70287840_70287930_70288275_70288364_70288468_70288599_70288891_70289043_70289306_70289367_70292475_70292548_70292742_70292893_70296452_70296559_70297082_70297148_70300589
ENSMUST00000019067.8	chr11	+	902	3	FSM	ENSMUSG00000018923.14	ENSMUST00000019067.8	902	3	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_2	11	1113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAGAGTCTCTCTCTCGC	NA	False	NA	NA	False	AATAAA	-20	NA	70342744	70344553	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70342890_70343033_70343165_70343927
ENSMUST00000019135.14	chr11	-	3816	17	FSM	ENSMUSG00000020740.14	ENSMUST00000019135.14	3816	17	0	0	0	0	multi-exon	TRUE	canonical	3	352	junction_6	42.6075385788712	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCATCTTTCAATACAG	3381	False	NA	-2	True	AATAAA	-15	NA	115494877	115475080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482580_115483257_115483357_115485531_115485608_115485734_115485820_115494653
ENSMUST00000019169.8	chr8	+	854	8	FSM	ENSMUSG00000002395.15	ENSMUST00000019169.8	854	8	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	107.997165495683	6360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819860	71822376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
ENSMUST00000019198.7	chr5	+	786	5	FSM	ENSMUSG00000019054.14	ENSMUST00000019198.7	786	5	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	76.6823806359714	2729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGTGTGAGCGAGCA	3268	False	NA	20	True	AATAAA	-21	NA	136990930	136995088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_136991083_136991852_136991986_136993946_136994024_136994418_136994525_136994770
ENSMUST00000019229.15	chr4	+	1145	7	FSM	ENSMUSG00000006392.17	ENSMUST00000019229.15	1145	7	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_1	88.2754527349226	3449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	False	NA	32	True	NA	NA	NA	118266562	118272308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_118266584_118268081_118268201_118268854_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
ENSMUST00000019231.12	chrX	+	2189	10	FSM	ENSMUSG00000019087.14	ENSMUST00000019231.12	2189	10	0	0	0	0	multi-exon	TRUE	canonical	3	647	junction_4	26.5934179176579	5152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACAGTAGATTTTTTTTTC	NA	False	NA	46	True	NA	NA	NA	73340702	73348327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347402
ENSMUST00000019283.10	chr8	+	1836	11	FSM	ENSMUSG00000019139.11	ENSMUST00000019283.10	1836	11	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	49.1426495012225	924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTCCTTGTGTGCTTTT	NA	False	NA	18	True	AATAAA	-14	NA	71047130	71049938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71047922_71048010_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
ENSMUST00000019323.11	chr5	+	1456	9	FSM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	0	0	0	0	multi-exon	FALSE	canonical	3	4657	junction_8	277.596267085853	10643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTGTAGATTTCCTTT	453	False	NA	38	True	AGTAAA	-25	NA	135807333	135819245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
ENSMUST00000019354.11	chr6	-	1312	9	FSM	ENSMUSG00000019210.11	ENSMUST00000019354.11	1312	9	0	0	0	0	multi-exon	FALSE	canonical	3	841	junction_3	98.1488028454754	5823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTTGTTGTTCCTTATG	NA	False	NA	-3	True	ATTAAA	-19	NA	120799754	120772204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_120772726_120774837_120774926_120778003_120778099_120780268_120780338_120781003_120781094_120784546_120784614_120785322_120785433_120795294_120795361_120799548
ENSMUST00000019362.15	chr11	+	2968	15	FSM	ENSMUSG00000020888.17	ENSMUST00000019362.15	2968	15	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_4	30.5160546571265	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCAAGCCTCTGGCTCC	7135	False	NA	12	True	AATAAA	-16	NA	69891420	69900937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339_69897417_69898278_69898347_69898640_69898770_69898845_69898978_69899106_69899287_69899602_69899822_69899969
ENSMUST00000019382.17	chr8	-	1158	13	FSM	ENSMUSG00000031708.18	ENSMUST00000019382.17	1158	13	0	0	0	0	multi-exon	FALSE	canonical	3	3555	junction_3	302.48290814891	12720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84321106	84298328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
ENSMUST00000019443.15	chr14	+	3485	21	FSM	ENSMUSG00000047098.19	ENSMUST00000019443.15	3485	21	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_6	30.6031044176894	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCCTCAGCATCCCGGGG	4174	False	NA	38	True	AATAAA	-41	NA	55829164	55841150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55829530_55829625_55829773_55829917_55830074_55830289_55830350_55830462_55830533_55831751_55831930_55832379_55832759_55832926_55833218_55833463_55833713_55833798_55833985_55834108_55834316_55836094_55836269_55836360_55836460_55836552_55836643_55838505_55838621_55838735_55838855_55839098_55839213_55839337_55839396_55840059_55840157_55840712_55840882_55840988
ENSMUST00000019447.15	chr11	-	1291	8	FSM	ENSMUSG00000019303.15	ENSMUST00000019447.15	1291	8	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_7	41.1021624139417	2705	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCTTTGCCTTTGGGA	NA	False	NA	NA	False	GATAAA	-14	NA	100986262	100982648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983_100986085_100986168
ENSMUST00000019470.14	chr11	+	2664	11	FSM	ENSMUSG00000078652.10	ENSMUST00000019470.14	2664	11	0	0	0	0	multi-exon	FALSE	canonical	3	1173	junction_6	119.560068584791	1672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGGTGCTGTACTCTG	NA	False	NA	34	True	ATTAAA	-35	NA	101207038	101214363	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
ENSMUST00000019506.9	chr8	-	616	3	FSM	ENSMUSG00000019362.9	ENSMUST00000019506.9	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	1764	junction_2	46	12554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCTGTGTGCTGTTTGGT	9834	False	NA	-7	True	AATAAA	-12	NA	84976348	84972866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84973323_84976102_84976159_84976244
ENSMUST00000019514.10	chr7	-	2290	6	FSM	ENSMUSG00000019370.11	ENSMUST00000019514.10	2290	6	0	0	0	0	multi-exon	FALSE	canonical	3	2296	junction_1	82.9925297843125	9841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGACTCTTCCGTCTG	NA	False	NA	-14	True	AATAAA	-15	NA	16658039	16649303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_16650902_16650999_16651136_16651310_16651418_16651509_16651654_16653559_16653591_16657765
ENSMUST00000019517.10	chr11	-	1646	12	FSM	ENSMUSG00000019373.12	ENSMUST00000019517.10	1646	12	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_5	45.2577558304642	1337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAATGTGTGTTCTCTCA	NA	False	NA	-4	True	ATTAAA	-27	NA	59730664	59708620	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59715100_59715275_59717115_59717257_59718671_59718852_59720972_59721066_59723709_59723760_59723857_59723971_59727716_59727847_59730495
ENSMUST00000019576.15	chr8	+	1656	11	FSM	ENSMUSG00000005481.19	ENSMUST00000019576.15	1656	11	0	0	0	0	multi-exon	FALSE	canonical	3	2216	junction_5	95.6715736256073	6270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAACGTGCCATCTTTTT	NA	False	NA	99	True	NA	NA	NA	84441805	84449977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ENSMUST00000019577.10	chr8	+	1522	7	FSM	ENSMUSG00000019433.10	ENSMUST00000019577.10	1522	7	0	0	0	0	multi-exon	FALSE	canonical	3	964	junction_1	101.245027312731	1105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAACTCATTCTGTAGAC	NA	False	NA	16	True	NA	NA	NA	84379305	84391323	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_84379367_84387587_84387910_84388583_84388770_84388863_84389045_84389677_84389791_84390548_84390631_84390746
ENSMUST00000019605.4	chr11	+	1927	7	FSM	ENSMUSG00000019461.13	ENSMUST00000019605.4	1927	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_4	3.33749739908346	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCCGGATGTGATGGGA	NA	False	NA	22	True	TATAAA	-22	NA	69737501	69741869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
ENSMUST00000019614.13	chr8	-	2677	19	FSM	ENSMUSG00000019470.13	ENSMUST00000019614.13	2677	19	0	0	0	0	multi-exon	FALSE	canonical	3	374	junction_12	44.2084358744927	607	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGGTCTTGACCTCCTTC	1011	False	NA	-4	True	AATACA	-16	NA	3671316	3660086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
ENSMUST00000019638.15	chr5	+	1787	10	FSM	ENSMUSG00000019494.15	ENSMUST00000019638.15	1787	10	0	0	0	0	multi-exon	FALSE	canonical	3	3954	junction_1	284.410501446999	17941	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGAGATTTTTTCTTGAG	NA	False	NA	NA	False	AATAAA	-17	NA	138159332	138162908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_138159445_138159636_138159760_138159935_138160068_138160398_138160488_138160583_138160647_138160996_138161045_138161391_138161507_138161588_138161682_138161770_138161872_138161997
ENSMUST00000019649.4	chr11	+	1499	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	0	0	0	0	multi-exon	FALSE	canonical	3	35417	junction_1	0	92889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	25	True	AATAAA	-24	NA	62441996	62444039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_62442422_62442965
ENSMUST00000019662.11	chr5	+	3479	15	FSM	ENSMUSG00000019518.12	ENSMUST00000019662.11	3479	15	0	0	0	0	multi-exon	TRUE	canonical	3	48	junction_6	9.89356624586021	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTGGTGCATTCCTATA	8077	False	NA	18	True	NA	NA	NA	138170263	138178691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174526_138174873_138174981_138175078_138175174_138175417_138175463_138176184_138176236_138176330_138176443_138176538
ENSMUST00000019677.12	chr4	+	2543	13	FSM	ENSMUSG00000028708.17	ENSMUST00000019677.12	2543	13	0	0	0	0	multi-exon	TRUE	canonical	3	99	junction_1	27.9607860325055	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696394	115736447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
ENSMUST00000019701.9	chrX	+	2722	4	FSM	ENSMUSG00000031383.9	ENSMUST00000019701.9	2722	4	0	0	0	0	multi-exon	TRUE	canonical	3	583	junction_1	9.62635271879577	1294	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGAGGTTGTTGCTTCTT	NA	False	NA	28	True	AATAAA	-22	NA	72683024	72687120	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_72683248_72683798_72684411_72684952_72685409_72685689
ENSMUST00000019723.8	chr17	-	1710	6	FSM	ENSMUSG00000019579.14	ENSMUST00000019723.8	1710	6	0	0	0	0	multi-exon	FALSE	canonical	3	1137	junction_1	57.4505004329814	6365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAACCACCTGAAGCCA	NA	False	NA	-29	True	NA	NA	NA	56490920	56482743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_56484004_56484698_56484772_56485263_56485346_56486363_56486426_56489664_56489716_56490738
ENSMUST00000019803.9	chr9	+	834	7	FSM	ENSMUSG00000019659.9	ENSMUST00000019803.9	834	7	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_3	22.4258035902098	6977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCTAGTTGCTCTGGAT	8482	False	NA	29	True	AATAAA	-29	NA	110485570	110540674	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_110485727_110521383_110521452_110537513_110537594_110538961_110539024_110539194_110539230_110540153_110540231_110540318
ENSMUST00000019833.5	chr6	+	479	2	FSM	ENSMUSG00000019689.5	ENSMUST00000019833.5	479	2	0	0	0	0	multi-exon	FALSE	canonical	3	741	junction_1	0	3609	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTTGGTTTTTGTGTGCT	9929	False	NA	9	True	ATTAAA	-17	NA	38511757	38516384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_38511946_38516093
ENSMUST00000019854.13	chr3	+	1226	6	FSM	ENSMUSG00000019710.14	ENSMUST00000019854.13	1226	6	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_1	297.101329515706	3586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTTAAAAGCTTTATAAAT	NA	False	NA	26	True	AATAAA	-28	NA	87826812	87830979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_87827013_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUST00000019862.3	chr12	-	1831	5	FSM	ENSMUSG00000019718.9	ENSMUST00000019862.3	1831	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	3.20156211871642	373	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAAGGAGTCAACTTCT	NA	False	NA	NA	False	CATAAA	-14	NA	72132213	72120201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_72120811_72123917_72124056_72124137_72124261_72126260_72126431_72131422
ENSMUST00000019882.16	chr7	+	819	6	FSM	ENSMUSG00000019738.16	ENSMUST00000019882.16	819	6	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_5	44.9239357136037	14024	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTCCCGTGTTTATTTC	NA	False	NA	18	True	AATAAA	-18	NA	29931372	29932815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_29931830_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
ENSMUST00000019907.8	chr10	-	1940	5	FSM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	0	0	0	0	multi-exon	FALSE	canonical	3	762	junction_1	15.5623744974859	1800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGATGTGTGCAGGTTTTT	NA	False	NA	-9	True	AATAAA	-45	NA	5755600	5749159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
ENSMUST00000019911.14	chr10	+	2005	14	FSM	ENSMUSG00000019777.17	ENSMUST00000019911.14	2005	14	0	0	0	0	multi-exon	TRUE	canonical	3	1084	junction_4	88.4199902429095	869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTTCTGTCTGTTTATT	NA	False	NA	14	True	ATTAAA	-15	NA	36850539	36877885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_36850800_36861122_36861236_36862302_36862421_36864075_36864151_36865145_36865285_36867752_36867895_36869603_36869697_36869771_36869881_36872984_36873126_36873389_36873499_36873962_36874094_36874409_36874566_36876364_36876423_36877524
ENSMUST00000019939.12	chr10	+	1401	4	FSM	ENSMUSG00000019804.13	ENSMUST00000019939.12	1401	4	0	0	0	0	multi-exon	FALSE	canonical	3	2006	junction_3	141.176800108548	12159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGCTCTGGTTGC	NA	False	NA	12	True	AATAAA	-13	NA	42378026	42411366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_42378489_42401949_42402046_42409144_42409270_42410648
ENSMUST00000019945.15	chr10	-	2129	12	FSM	ENSMUSG00000019809.17	ENSMUST00000019945.15	2129	12	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_6	16.7987602848376	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTTTAGCCATTAATTT	NA	False	NA	NA	False	AATAAA	-34	NA	13428883	13399859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428569
ENSMUST00000019950.6	chr10	-	2297	11	FSM	ENSMUSG00000019814.6	ENSMUST00000019950.6	2297	11	0	0	0	0	multi-exon	FALSE	canonical	3	645	junction_7	42.5845042239545	2081	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTAGGTTTTGATGAGAT	NA	False	NA	NA	False	ATTAAA	-16	NA	13068912	13053883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_13054741_13054866_13055068_13055398_13055452_13055738_13055879_13056633_13056762_13058022_13058273_13058604_13058741_13061167_13061256_13066318_13066490_13067851_13067984_13068771
ENSMUST00000019951.16	chr10	-	2177	11	FSM	ENSMUSG00000019813.17	ENSMUST00000019951.16	2177	11	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_4	38.3583107031579	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGCCTGTGGAAATATT	390	False	NA	-1	True	AATAAA	-20	NA	41685603	41594841	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568
ENSMUST00000019962.15	chr10	+	2922	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	0	0	0	0	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	1400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCATATTTTGATTATGA	NA	False	NA	20	True	AATAAA	-25	NA	41395409	41407044	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
ENSMUST00000019965.13	chr10	-	1602	10	FSM	ENSMUSG00000019822.13	ENSMUST00000019965.13	1602	10	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_9	17.8020667408847	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTCTACCTTGTTCCTT	NA	False	NA	0	True	AATAAA	-20	NA	41366336	41363167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41364306_41364428_41364512_41364729_41364820_41364926_41365021_41365270_41365348_41365459_41365557_41365978
ENSMUST00000019967.16	chr10	+	3563	24	FSM	ENSMUSG00000019823.18	ENSMUST00000019967.16	3563	24	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_2	27.5095446574272	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9093	False	NA	29	True	AATAAA	-18	NA	41352309	41363026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
ENSMUST00000019982.9	chr10	-	887	6	FSM	ENSMUSG00000019837.9	ENSMUST00000019982.9	887	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_5	179.465205541353	754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGACCTGGATTCGATTT	8581	False	NA	NA	False	NA	NA	NA	40133672	40125345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133571
ENSMUST00000019991.8	chr10	+	2929	12	FSM	ENSMUSG00000019845.9	ENSMUST00000019991.8	2929	12	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	7.58423767804153	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATCTCTGTGTTAAGTCC	NA	False	NA	NA	False	AATATA	-18	NA	39010018	39027054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_39010104_39010201_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39020559_39020751_39020928_39021568_39021710_39023307_39023449_39023758_39023934_39025454
ENSMUST00000019998.9	chr10	+	1952	3	FSM	ENSMUSG00000019851.9	ENSMUST00000019998.9	1952	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	1	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTCTGCTTTGTAGT	NA	False	NA	12	True	AATAAA	-14	NA	18720767	18732821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_18721155_18729284_18729426_18731397
ENSMUST00000020002.9	chr10	-	846	3	FSM	ENSMUSG00000078453.4	ENSMUST00000020002.9	846	3	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	12	3773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTGGTGGCTGTGTTTT	NA	False	NA	-4	True	AATAAA	-22	NA	17899036	17887007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_17887565_17894586_17894654_17898814
ENSMUST00000020012.7	chr10	-	1981	11	FSM	ENSMUSG00000019863.8	ENSMUST00000020012.7	1981	11	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	11.040380428228	359	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGGATTTTACTATAAT	NA	False	NA	NA	False	TATAAA	-6	NA	43777741	43750183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_43750703_43752467_43752674_43757468_43757587_43758061_43758255_43760744_43760858_43760938_43761115_43764964_43765133_43770510_43770608_43771429_43771529_43772004_43772165_43777609
ENSMUST00000020027.11	chr10	-	2880	9	FSM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_6	44.2279252848243	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGGTGGTAGCATTACA	NA	False	NA	NA	False	AATAAA	-16	NA	57408626	57391869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_57393389_57395458_57395690_57395793_57395939_57399051_57399313_57400056_57400195_57400415_57400496_57401420_57401591_57403760_57403923_57408452
ENSMUST00000020078.14	chr10	+	4327	10	FSM	ENSMUSG00000019920.19	ENSMUST00000020078.14	4327	10	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	23.8875968642854	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTACATATCATTTAG	NA	False	NA	10	True	AATAAA	-19	NA	58159287	58260513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_58159510_58234842_58235003_58243891_58243959_58245381_58245503_58245874_58246025_58248224_58248376_58249794_58249888_58252455_58252505_58254220_58254297_58257275
ENSMUST00000020081.11	chr10	+	1834	8	FSM	ENSMUSG00000019923.15	ENSMUST00000020081.11	1834	8	0	0	0	0	multi-exon	FALSE	canonical	3	928	junction_7	94.1772102940808	2390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTCCTTGTTGCATT	NA	False	NA	10	True	AATAAA	-23	NA	72490676	72510796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72509797
ENSMUST00000020085.7	chr10	-	1431	7	FSM	ENSMUSG00000019927.7	ENSMUST00000020085.7	1431	7	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_2	5.39804491356722	296	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCTTGACTACTTAATGCA	NA	False	NA	0	True	AATAAA	-18	NA	71121092	71090809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_71091705_71092444_71092539_71094030_71094137_71095571_71095650_71097913_71097946_71098028_71098093_71120930
ENSMUST00000020109.5	chr10	-	1705	11	FSM	ENSMUSG00000019948.5	ENSMUST00000020109.5	1705	11	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_5	22.702422778197	1867	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATCTGTTTAATGTTTA	NA	False	NA	-18	True	AATAAA	-21	NA	89568157	89547832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_89548423_89550731_89550871_89552934_89553107_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561766_89562498_89562623_89564015_89564085_89564761_89564880_89568035
ENSMUST00000020113.15	chr10	+	2862	12	FSM	ENSMUSG00000019952.16	ENSMUST00000020113.15	2862	12	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_11	10.2158522093674	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAATGAAATGTA	NA	False	NA	NA	False	NA	NA	NA	98942897	99033850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_98943086_98943653_98943739_98960692_98960865_98965344_98965525_98980096_98980205_98980340_98980457_98988662_98988797_98990930_98991000_98992063_98992214_99000730_99000812_99028643_99028860_99032487
ENSMUST00000020145.12	chr10	+	2456	12	FSM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	0	0	0	0	multi-exon	FALSE	canonical	3	717	junction_1	88.4218850289119	1368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	18	True	AATAAA	-24	NA	21870564	21875802	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ENSMUST00000020150.10	chr10	+	1328	3	FSM	ENSMUSG00000019975.13	ENSMUST00000020150.10	1328	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	32.5	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTATTTTGCTCCATAAT	638	False	NA	12	True	AATAAA	-17	NA	90918801	90938469	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_90919159_90929000_90929119_90937616
ENSMUST00000020153.10	chr10	+	2793	18	FSM	ENSMUSG00000019977.17	ENSMUST00000020153.10	2793	18	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	231.196571495514	675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTTTATTTCTTAGACA	NA	False	NA	27	True	AATAAA	-29	NA	21171877	21244797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212874_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
ENSMUST00000020203.7	chr10	-	861	4	FSM	ENSMUSG00000020018.7	ENSMUST00000020203.7	861	4	0	0	0	0	multi-exon	FALSE	canonical	3	2132	junction_3	195.841772867792	35826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTGTTCACTTGAAAG	NA	False	NA	NA	False	GATAAA	-36	NA	93425568	93418890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_93419393_93419891_93419957_93423859_93423986_93425400
ENSMUST00000020209.16	chr10	+	1110	4	FSM	ENSMUSG00000020022.18	ENSMUST00000020209.16	1110	4	0	0	0	0	multi-exon	FALSE	canonical	3	3293	junction_3	309.018877524767	30140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGCAAGATGTTCTATTT	NA	False	NA	11	True	NA	NA	NA	94034816	94057305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_94034993_94035811_94035895_94039149_94039238_94056542
ENSMUST00000020215.16	chr10	-	2222	3	FSM	ENSMUSG00000020027.19	ENSMUST00000020215.16	2222	3	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_2	23.5	1196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTGAGTTGTAGGTGTA	NA	False	NA	2	True	AATAAA	-32	NA	95252719	95247351	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_95248973_95250692_95251054_95252479
ENSMUST00000020238.14	chr10	-	2825	18	FSM	ENSMUSG00000020048.14	ENSMUST00000020238.14	2825	18	0	0	0	0	multi-exon	FALSE	canonical	3	2860	junction_11	342.987041630793	6048	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	-40	True	AATAAA	-16	NA	86541373	86526703	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
ENSMUST00000020248.16	chr10	+	1052	7	FSM	ENSMUSG00000020056.17	ENSMUST00000020248.16	1052	7	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_4	34.2377309736236	3747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGAATGTGTCTTAAGTT	NA	False	NA	NA	False	AATATA	-17	NA	88036954	88082020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055111_88055223_88070255_88070321_88081617
ENSMUST00000020252.10	chr10	+	1139	9	FSM	ENSMUSG00000020059.10	ENSMUST00000020252.10	1139	9	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	7.47391296443837	1259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTGGTTTCAGTATAT	NA	False	NA	3	True	AATAAA	-15	NA	88295430	88309097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88302300_88302419_88303144_88303245_88305407_88305507_88308537_88308643_88308766
ENSMUST00000020258.10	chr10	+	3898	25	FSM	ENSMUSG00000020064.10	ENSMUST00000020258.10	3898	25	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_7	41.1321548993809	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATACCAGTAGTTTCTATG	NA	False	NA	13	True	AATAAA	-27	NA	63079689	63153653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
ENSMUST00000020263.14	chr10	-	2213	10	FSM	ENSMUSG00000020069.17	ENSMUST00000020263.14	2213	10	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_6	80.8621750760186	2469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTCTGTCCTAGAATAT	5781	False	NA	-15	True	AATAAA	-15	NA	62859673	62850442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859498
ENSMUST00000020270.6	chr10	-	2535	15	FSM	ENSMUSG00000020076.8	ENSMUST00000020270.6	2535	15	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_9	23.4748019486984	2116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGAGTTTTCT	8106	False	NA	-11	True	ATTAAA	-28	NA	62486997	62451793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62486803
ENSMUST00000020271.13	chr10	-	938	3	FSM	ENSMUSG00000020077.15	ENSMUST00000020271.13	938	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	2	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTGGCTATGTGACATGG	NA	False	NA	-2	True	AATAAA	-21	NA	62343534	62330206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_62330886_62333557_62333703_62343420
ENSMUST00000020283.5	chr10	-	2175	9	FSM	ENSMUSG00000020086.7	ENSMUST00000020283.5	2175	9	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_7	26.0813031691286	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCAGCGTCTTTCTTATA	NA	False	NA	-26	True	NA	NA	NA	61619926	61574443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_61575242_61576913_61577089_61582411_61582502_61583450_61583551_61585054_61585166_61587455_61587654_61589240_61589348_61593502_61593734_61619561
ENSMUST00000020285.10	chr10	+	2613	7	FSM	ENSMUSG00000020088.11	ENSMUST00000020285.10	2613	7	0	0	0	0	multi-exon	FALSE	canonical	3	1130	junction_5	94.5492229241233	3395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTCTCCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	61516088	61529076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_61516193_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
ENSMUST00000020286.7	chr10	-	1364	11	Antisense	novelGene_ENSMUSG00000020089.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCGCGCAGGCGCACTCTG	NA	False	NA	NA	False	GGGGCT	-28	NA	61509947	61484330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr10_-_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
ENSMUST00000020298.8	chr10	+	789	4	FSM	ENSMUSG00000020098.8	ENSMUST00000020298.8	789	4	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_3	1.24721912892465	652	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAGCTTCTAGAACCTTC	NA	False	NA	6	True	AATAAA	-17	NA	60925137	60930103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_60925196_60927842_60927975_60928382_60928464_60929585
ENSMUST00000020307.11	chr10	-	1379	5	FSM	ENSMUSG00000020107.11	ENSMUST00000020307.11	1379	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	152.559004978402	1990	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGCTGTGCGTATCCTTT	NA	False	NA	-4	True	AATAAA	-18	NA	59838933	59823729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838239_59838290_59838777
ENSMUST00000020308.5	chr10	-	1755	3	FSM	ENSMUSG00000020108.5	ENSMUST00000020308.5	1755	3	0	0	0	0	multi-exon	FALSE	canonical	3	721	junction_1	4.5	4104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGTCTCATCGGCGCCA	NA	False	NA	-4	True	AATAAA	-17	NA	59787656	59785490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_59786852_59787138_59787395_59787518
ENSMUST00000020311.13	chr10	+	2336	14	FSM	ENSMUSG00000020111.16	ENSMUST00000020311.13	2336	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	77.7733773527424	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGCTCTGTGTCCTTTCT	NA	False	NA	25	True	NA	NA	NA	59538420	59699952	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_59538510_59563778_59563941_59568804_59568980_59576481_59576645_59586325_59586370_59592527_59592540_59602905_59602912_59603959_59604075_59623762_59623846_59624700_59624899_59663010_59663149_59675496_59675606_59697384_59697475_59699000
ENSMUST00000020317.8	chr11	-	1544	7	FSM	ENSMUSG00000020116.8	ENSMUST00000020317.8	1544	7	0	0	0	0	multi-exon	FALSE	canonical	3	1392	junction_5	81.0276016072438	2263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCAGTCTCTTTTTCTAA	NA	False	NA	48	True	AGTAAA	-19	NA	17161568	17153197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_17154002_17154500_17154572_17158788_17158907_17159076_17159138_17159310_17159395_17160987_17161138_17161312
ENSMUST00000020341.9	chr10	-	1649	2	FSM	ENSMUSG00000020133.9	ENSMUST00000020341.9	1649	2	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_1	0	1485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTGGCTCGCTTTATTA	8717	False	NA	NA	False	GATAAA	-19	NA	80156371	80154087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80155382_80156016
ENSMUST00000020358.12	chr11	+	2827	6	FSM	ENSMUSG00000020149.18	ENSMUST00000020358.12	2827	6	0	0	0	0	multi-exon	FALSE	canonical	3	1848	junction_1	130.08397287906	7329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCGCTTGTTGGGTCTAT	NA	False	NA	NA	False	AATAAA	-24	NA	20151431	20176856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
ENSMUST00000020361.7	chr10	+	758	8	FSM	ENSMUSG00000020153.15	ENSMUST00000020361.7	758	8	0	0	0	0	multi-exon	FALSE	canonical	3	1255	junction_1	343.259525783067	18416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTGTGTTCTGTGTGGA	9692	False	NA	23	True	AATAAA	-14	NA	80085285	80092626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
ENSMUST00000020365.15	chr10	+	2640	14	FSM	ENSMUSG00000020156.17	ENSMUST00000020365.15	2640	14	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	105.419758317817	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATAGTCATTGCACA	8218	False	NA	19	True	TATAAA	-17	NA	80062267	80079737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80062539_80064155_80064273_80064828_80064915_80065890_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
ENSMUST00000020372.6	chr10	-	445	3	FSM	ENSMUSG00000020163.13	ENSMUST00000020372.6	445	3	0	0	0	0	multi-exon	FALSE	canonical	3	4161	junction_1	104.5	50419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGCTCCTTCCTCATC	NA	False	NA	-1	True	ATTAAA	-21	NA	80242664	80238830	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80238990_80239969_80240121_80242529
ENSMUST00000020382.8	chr10	-	1327	7	FSM	ENSMUSG00000020171.9	ENSMUST00000020382.8	1327	7	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_4	39.2074256005444	1784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTGTCTGCCTCTTGTG	3371	False	NA	-14	True	AATAAA	-14	NA	117060412	117051126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_117051742_117053116_117053205_117053333_117053427_117056237_117056333_117056436_117056504_117058078_117058199_117060163
ENSMUST00000020408.16	chr10	-	3099	12	FSM	ENSMUSG00000020184.16	ENSMUST00000020408.16	3099	12	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_11	63.7658423031336	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTCAGTGATTTTG	NA	False	NA	1	True	AATAAA	-41	NA	117546663	117524779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850_117545934_117546456
ENSMUST00000020444.16	chr10	+	1664	3	FSM	ENSMUSG00000020224.16	ENSMUST00000020444.16	1664	3	0	0	0	0	multi-exon	FALSE	canonical	3	990	junction_2	137	27767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCATTCTCAGAATCGGTT	NA	False	NA	NA	False	NA	NA	NA	120062974	120068487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_120063029_120063878_120064109_120067107
ENSMUST00000020446.11	chr10	+	904	7	FSM	ENSMUSG00000020225.11	ENSMUST00000020446.11	904	7	0	0	0	0	multi-exon	FALSE	canonical	3	514	junction_6	43.3628104870214	4763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTCTTCTATAATT	NA	False	NA	31	True	ATTAAA	-43	NA	120044654	120060822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_120044848_120051445_120051555_120053408_120053515_120056655_120056690_120057910_120058029_120059741_120059788_120060524
ENSMUST00000020454.11	chr10	-	1621	9	FSM	ENSMUSG00000020232.18	ENSMUST00000020454.11	1621	9	0	0	0	0	multi-exon	FALSE	canonical	3	490	junction_7	50.249222630803	998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	False	NA	-11	True	AATAAA	-17	NA	81186258	81181884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967
ENSMUST00000020484.9	chr10	+	3325	14	FSM	ENSMUSG00000020250.12	ENSMUST00000020484.9	3325	14	0	0	0	0	multi-exon	FALSE	canonical	1	113	junction_1	208.745903123884	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTGCCTTCTGACTGAGT	NA	False	NA	15	True	AATAAA	-16	NA	82695012	82733546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_82695135_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
ENSMUST00000020493.9	chr10	+	2290	9	FSM	ENSMUSG00000020260.10	ENSMUST00000020493.9	2290	9	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	28.5938695352693	1938	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCAGTCCTAGAAATGGT	NA	False	NA	16	True	AATAAA	-17	NA	77095051	77105409	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_77095288_77096407_77096659_77098270_77098416_77099098_77099210_77100789_77100857_77101669_77101796_77102746_77102928_77103017_77103142_77104360
ENSMUST00000020504.6	chr11	-	636	3	Antisense	novelGene_ENSMUSG00000020267.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	84457	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGCCGGCGTGCGGCGAGC	2867	False	NA	NA	False	NA	NA	NA	54761327	54757208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr11_-_54757427_54760673_54760779_54761014
ENSMUST00000020513.10	chr11	-	3747	22	FSM	ENSMUSG00000020273.14	ENSMUST00000020513.10	3747	22	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	18.5612914946701	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGTCTTTAATTTTTT	1269	False	NA	-1	True	TTTAAA	-8	NA	23845253	23812645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_23814057_23816410_23816468_23816629_23816696_23817197_23817419_23817501_23817591_23817956_23818127_23818358_23818481_23820192_23820303_23820742_23820863_23822426_23822481_23823227_23823313_23823789_23823911_23824474_23824548_23826319_23826459_23829873_23829964_23832182_23832295_23834060_23834115_23835163_23835274_23835490_23835573_23840228_23840296_23841742_23841905_23845021
ENSMUST00000020528.14	chr11	+	1737	4	FSM	ENSMUSG00000020287.16	ENSMUST00000020528.14	1737	4	0	0	0	0	multi-exon	FALSE	canonical	3	333	junction_1	11.8977121983832	2037	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGATGGCACGCGTGTGT	NA	False	NA	6	True	NA	NA	NA	32176510	32182700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_32176718_32177751_32177950_32179848_32180054_32181573
ENSMUST00000020535.2	chr11	+	604	3	FSM	ENSMUSG00000020295.2	ENSMUST00000020535.2	604	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTGAGCCTGGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	32250068	32250873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_32250213_32250307_32250513_32250618
ENSMUST00000020537.9	chr11	+	2239	5	FSM	ENSMUSG00000020297.11	ENSMUST00000020537.9	2239	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	2.06155281280883	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGACTGTCTGTCCAT	NA	False	NA	21	True	AATAAA	-17	NA	31950462	32009202	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_31950597_31951730_31951881_31967650_31967735_32005012_32005124_32007442
ENSMUST00000020552.8	chr10	+	1143	2	FSM	ENSMUSG00000020308.8	ENSMUST00000020552.8	1143	2	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_1	0	899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTTGCTGGTCACCTG	7965	False	NA	11	True	AATAAA	-13	NA	79505202	79511961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_79505618_79511233
ENSMUST00000020562.5	chr11	+	1634	13	FSM	ENSMUSG00000007739.11	ENSMUST00000020562.5	1634	13	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_2	1486.11417938416	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGATAAAAGGATGGTTG	NA	False	NA	NA	False	NA	NA	NA	22940649	22953151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_22940881_22943266_22943320_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
ENSMUST00000020576.8	chr11	-	3512	6	FSM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_3	51.9422756528822	1617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTTGTTTTGGTTTCT	NA	False	NA	-5	True	AATAAA	-16	NA	40646138	40639378	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
ENSMUST00000020578.11	chr11	+	1577	4	FSM	ENSMUSG00000020328.11	ENSMUST00000020578.11	1577	4	0	0	0	0	multi-exon	FALSE	canonical	3	1122	junction_2	37.9326889224701	8130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTACTTTTTCTTTTCT	NA	False	NA	29	True	AATAAA	-21	NA	40624493	40630873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_40624982_40626844_40626894_40627319_40627472_40629985
ENSMUST00000020579.9	chr11	-	3892	18	FSM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	0	0	0	0	multi-exon	TRUE	canonical	3	534	junction_10	59.4855104336938	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCCAATCAGTGATTAA	NA	False	NA	-8	True	AATAAA	-17	NA	40624249	40592221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
ENSMUST00000020629.5	chr11	+	2947	19	FSM	ENSMUSG00000020363.7	ENSMUST00000020629.5	2947	19	0	0	0	0	multi-exon	FALSE	canonical	2	320	junction_10	53.5808204583287	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCGACTTGTTTGAATT	NA	False	NA	27	True	AATAAA	-17	NA	49685013	49729440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_49685071_49695778_49695887_49698521_49698621_49699860_49699987_49701790_49701850_49702496_49702632_49706106_49706169_49709406_49709487_49709963_49710082_49714038_49714203_49714560_49714657_49714767_49714866_49715158_49715280_49717570_49717729_49717957_49718073_49720566_49720695_49723687_49723856_49726438_49726601_49728547
ENSMUST00000020637.9	chr11	-	3779	15	FSM	ENSMUSG00000020368.16	ENSMUST00000020637.9	3779	15	0	0	0	0	multi-exon	FALSE	canonical	3	3893	junction_7	208.647160908319	2047	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTCTGCAGGTTTCTC	8136	False	NA	-54	True	AATAAA	-22	NA	50216500	50185293	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
ENSMUST00000020640.8	chr11	+	1447	8	FSM	ENSMUSG00000020372.16	ENSMUST00000020640.8	1447	8	0	0	0	0	multi-exon	FALSE	canonical	1	1907	junction_2	1651.73542626153	64145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACCCACCTTTCCCCAAG	NA	False	NA	NA	False	AATAAA	-23	NA	48691186	48697261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_48691400_48692489_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
ENSMUST00000020647.10	chr11	+	1142	7	FSM	ENSMUSG00000020381.11	ENSMUST00000020647.10	1142	7	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_2	8.63616427202108	851	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCTTGCTGCTACACTC	NA	False	NA	7	True	AATAAA	-17	NA	50065675	50090942	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_50065779_50067653_50067714_50073318_50073408_50085034_50085111_50087770_50087920_50088445_50088531_50090362
ENSMUST00000020653.6	chr11	+	1201	7	FSM	ENSMUSG00000020386.6	ENSMUST00000020653.6	1201	7	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_5	46.9006041183551	3249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGTGTTGGGCAGCTGT	3565	False	NA	12	True	AATAAA	-18	NA	51654513	51682752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_51654619_51668313_51668389_51670515_51670636_51673598_51673665_51678976_51679081_51680023_51680156_51682153
ENSMUST00000020657.13	chr11	-	1792	6	FSM	ENSMUSG00000020390.13	ENSMUST00000020657.13	1792	6	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_4	76.342910607338	5322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACACCAGCCTCCTAGAGA	NA	False	NA	58	True	NA	NA	NA	51891311	51876323	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119
ENSMUST00000020665.13	chr11	+	1193	3	FSM	ENSMUSG00000020397.16	ENSMUST00000020665.13	1193	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	179.5	1190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAATTGTCATTCTTGGA	NA	False	NA	12	True	AATAAA	-14	NA	46327778	46332354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_46327837_46330632_46330803_46331389
ENSMUST00000020677.8	chr11	+	1277	9	FSM	ENSMUSG00000020407.14	ENSMUST00000020677.8	1277	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	932.389931506663	4052	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGTGTGACTCTGC	NA	False	NA	20	True	AATAAA	-14	NA	9068102	9086164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_9068285_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ENSMUST00000020685.10	chr11	-	634	5	FSM	ENSMUSG00000020415.17	ENSMUST00000020685.10	634	5	0	0	0	0	multi-exon	FALSE	canonical	3	2427	junction_4	3215.28008111269	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTGAGTCTCTGGGCAGC	NA	False	NA	NA	False	NA	NA	NA	43317054	43311857	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317027
ENSMUST00000020687.15	chr11	-	741	6	FSM	ENSMUSG00000020415.17	ENSMUST00000020687.15	741	6	0	0	0	0	multi-exon	FALSE	canonical	3	2427	junction_5	2882.94754721622	25774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAACCCCTGATTGGTAT	NA	False	NA	-12	True	AATAAA	-34	NA	43317078	43311076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317027
ENSMUST00000020689.10	chr11	-	1915	12	FSM	ENSMUSG00000020419.12	ENSMUST00000020689.10	1915	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_8	65.3129782200057	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTTTGATAATTTATGT	NA	False	NA	-20	True	AATAAA	-11	NA	4391103	4295813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_4296667_4358589_4358844_4359006_4359159_4362212_4362281_4370703_4370731_4371588_4371610_4374270_4374308_4374755_4374820_4375505_4375627_4377243_4377386_4385001_4385090_4391015
ENSMUST00000020699.4	chr11	+	1574	9	FSM	ENSMUSG00000020424.4	ENSMUST00000020699.4	1574	9	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_3	11.4229757506527	510	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGTGACAGCTGGCG	7118	False	NA	17	True	AATAAA	-25	NA	4168224	4172409	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_4168427_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842
ENSMUST00000020710.11	chr11	-	1897	10	FSM	ENSMUSG00000020432.13	ENSMUST00000020710.11	1897	10	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_9	45.2714719535328	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3881995	3867191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881585_3881975
ENSMUST00000020717.12	chr6	+	1116	6	FSM	ENSMUSG00000020440.14	ENSMUST00000020717.12	1116	6	0	0	0	0	multi-exon	TRUE	canonical	3	1725	junction_4	143.712769091685	622	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGGTGTTGTCTGTTGCCT	-31	True	NA	17	True	AATAAA	-17	NA	28423558	28426601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_28423755_28424288_28424370_28424720_28424831_28425171_28425244_28425737_28425864_28426070
ENSMUST00000020719.7	chr11	+	1285	7	FSM	ENSMUSG00000020441.7	ENSMUST00000020719.7	1285	7	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_6	17.464249196573	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTATATTATCTCGCT	NA	False	NA	7	True	AGTAAA	-15	NA	59099146	59101564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_59099500_59099645_59099692_59099794_59099878_59099953_59100027_59100133_59100220_59100798_59100931_59101052
ENSMUST00000020741.12	chr11	-	1546	9	FSM	ENSMUSG00000020457.14	ENSMUST00000020741.12	1546	9	0	0	0	0	multi-exon	FALSE	canonical	3	1733	junction_5	106.427719016241	7686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTGAGGTTTGCTGTG	NA	False	NA	-1	True	TATAAA	-34	NA	3216393	3199906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_3200366_3202159_3202283_3202643_3202812_3204511_3204643_3206542_3206713_3209305_3209376_3212488_3212665_3214766_3214891_3216268
ENSMUST00000020749.13	chr11	+	2425	14	FSM	ENSMUSG00000020459.15	ENSMUST00000020749.13	2425	14	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	55.902387454177	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAATGGGCTGGAGAGAT	NA	False	NA	NA	False	NA	NA	NA	29476447	29495279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_29476488_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
ENSMUST00000020756.9	chr11	+	2707	28	FSM	ENSMUSG00000020464.16	ENSMUST00000020756.9	2707	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	125.489275633577	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGCTTGCCTACTATT	NA	False	NA	NA	False	NA	NA	NA	29080747	29111828	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
ENSMUST00000020768.4	chr11	-	840	3	FSM	ENSMUSG00000020475.4	ENSMUST00000020768.4	840	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	6	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCACGTTTCATATAGCT	8648	False	NA	NA	False	AATAAA	-15	NA	5753733	5751639	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_5751840_5752998_5753180_5753274
ENSMUST00000020770.11	chr11	-	700	3	FSM	ENSMUSG00000020477.11	ENSMUST00000020770.11	700	3	0	0	0	0	multi-exon	FALSE	canonical	3	2385	junction_2	231.5	955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCTGGGTCTCTCTCTC	NA	False	NA	-25	True	AATAAA	-18	NA	5657667	5654325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_5654733_5657297_5657410_5657486
ENSMUST00000020794.6	chr11	+	3037	4	FSM	ENSMUSG00000020492.12	ENSMUST00000020794.6	3037	4	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_1	6.12825877028341	1692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGCCTCCATGTTATATT	NA	False	NA	13	True	AATAAA	-21	NA	87000059	87015461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_87000131_87006929_87007017_87008493_87008671_87012759
ENSMUST00000020801.14	chr11	-	3218	4	FSM	ENSMUSG00000020495.14	ENSMUST00000020801.14	3218	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	5.65685424949238	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTATCTGTTTTGTC	NA	False	NA	1	True	AATAAA	-35	NA	86977600	86968557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_86968977_86970991_86971865_86974425_86974572_86975820
ENSMUST00000020804.8	chr11	-	2336	10	FSM	ENSMUSG00000061666.7	ENSMUST00000020804.8	2336	10	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_6	8.73053390247253	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTGATTCCAGTGTGT	NA	False	NA	-8	True	AATAAA	-39	NA	86964888	86924692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_86926122_86926417_86926470_86928656_86928717_86932613_86932748_86935952_86936043_86936581_86936701_86947617_86947664_86950250_86950387_86954724_86954768_86964661
ENSMUST00000020820.2	chr11	+	722	7	FSM	ENSMUSG00000020514.9	ENSMUST00000020820.2	722	7	0	0	0	0	multi-exon	TRUE	canonical	3	1080	junction_1	114.661821603066	11617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTTTCATTGAATTATT	1481	False	NA	12	True	AGTAAA	-15	NA	58062486	58070391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_58062540_58062619_58062669_58063858_58063977_58066102_58066169_58066957_58067036_58068042_58068113_58070103
ENSMUST00000020822.12	chr11	+	2035	7	FSM	ENSMUSG00000020515.14	ENSMUST00000020822.12	2035	7	0	0	0	0	multi-exon	FALSE	canonical	3	691	junction_3	50.6603614497787	2319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGAAGTGTGGTCTTTG	NA	False	NA	14	True	AATAAA	-19	NA	57994978	58009420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_57995035_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
ENSMUST00000020824.15	chr11	-	2771	15	FSM	ENSMUSG00000020516.16	ENSMUST00000020824.15	2771	15	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_9	88.8732472774156	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCTGTGGCTTGTCTG	NA	False	NA	-4	True	AATAAA	-21	NA	86435631	86392858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86407569_86407814_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
ENSMUST00000020831.13	chr11	-	2557	14	FSM	ENSMUSG00000020523.15	ENSMUST00000020831.13	2557	14	0	0	0	0	multi-exon	TRUE	canonical	3	63	junction_13	118.75144346678	904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCGTGGTATTTAATAGC	NA	False	NA	NA	False	AATAAA	-21	NA	57409443	57373818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405115_57409398
ENSMUST00000020851.15	chr11	+	1224	4	FSM	ENSMUSG00000020544.15	ENSMUST00000020851.15	1224	4	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_3	41.2876091178294	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAGGCCTGACAACTTGA	NA	False	NA	10	True	NA	NA	NA	90528998	90535757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_90529379_90531202_90531359_90534478_90534605_90535195
ENSMUST00000020856.6	chr12	-	1871	12	FSM	ENSMUSG00000020547.6	ENSMUST00000020856.6	1871	12	0	0	0	0	multi-exon	FALSE	canonical	3	931	junction_9	81.950499068161	2094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATATGGTCAGAGCGTGT	NA	False	NA	-11	True	AATAAA	-21	NA	36206824	36141833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
ENSMUST00000020885.13	chr12	+	2019	5	FSM	ENSMUSG00000020570.16	ENSMUST00000020885.13	2019	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_3	20.9806458432528	844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAGAATGCCCCGTT	8425	False	NA	NA	False	AATAAA	-7	NA	33004182	33026903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_33004359_33015371_33015500_33017534_33017743_33024126_33024319_33025588
ENSMUST00000020896.17	chr12	-	1932	6	FSM	ENSMUSG00000020577.18	ENSMUST00000020896.17	1932	6	0	0	0	0	multi-exon	FALSE	canonical	3	804	junction_3	64.3913037606787	1558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATGGGTGTTTAAATCAA	NA	False	NA	-4	True	AATAAA	-20	NA	36092488	36064555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_36065772_36070488_36070603_36071799_36071914_36072751_36072833_36073903_36074072_36092249
ENSMUST00000020909.4	chr12	+	1773	7	FSM	ENSMUSG00000020585.5	ENSMUST00000020909.4	1773	7	0	0	0	0	multi-exon	FALSE	canonical	3	924	junction_4	59.5158708991886	8033	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCTCATGTTTATGCTA	NA	False	NA	38	True	AATAAA	-29	NA	8971663	8988742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_8972295_8981627_8981749_8984695_8984773_8984865_8984989_8985986_8986083_8986696_8986796_8988116
ENSMUST00000020927.10	chr12	+	2959	7	FSM	ENSMUSG00000020605.10	ENSMUST00000020927.10	2959	7	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	12.8765506078125	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCAGTGTTGTTCTTTTCC	NA	False	NA	NA	False	AGTAAA	-24	NA	8363431	8393824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_8363498_8367784_8367951_8371518_8371727_8373869_8374102_8386237_8386396_8387632_8387769_8391831
ENSMUST00000020947.7	chr12	+	1480	2	FSM	ENSMUSG00000020621.7	ENSMUST00000020947.7	1480	2	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	0	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGTGCATTTCTTTAA	NA	False	NA	11	True	AATAAA	-17	NA	10440771	10445562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_10441227_10444537
ENSMUST00000020949.12	chr11	+	2068	12	FSM	ENSMUSG00000020623.12	ENSMUST00000020949.12	2068	12	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_7	8.31308835611224	693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGCATAGTATTAGTG	NA	False	NA	14	True	AGTAAA	-24	NA	110289947	110404467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_110290252_110373364_110373432_110380970_110381020_110381587_110381702_110383338_110383459_110383721_110383839_110385120_110385173_110387164_110387293_110388722_110388801_110390208_110390349_110397531_110397578_110403614
ENSMUST00000020957.13	chr12	+	1652	4	FSM	ENSMUSG00000020629.13	ENSMUST00000020957.13	1652	4	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_2	13.6950923894494	2383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTCTCTCGAGAGTTCT	NA	False	NA	15	True	NA	NA	NA	28725229	28732174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_28725372_28727776_28727897_28729388_28729569_28730964
ENSMUST00000020959.9	chr12	+	1455	8	FSM	ENSMUSG00000020630.10	ENSMUST00000020959.9	1455	8	0	0	0	0	multi-exon	TRUE	canonical	3	155	junction_3	35.1318217284442	1751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACATCTAGTTTGAGTTA	NA	False	NA	13	True	AATAAA	-21	NA	28699600	28709588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_28699816_28702023_28702140_28703061_28703224_28705583_28705684_28707270_28707326_28707631_28707717_28708169_28708295_28708991
ENSMUST00000020962.12	chr12	-	2696	7	FSM	ENSMUSG00000020634.13	ENSMUST00000020962.12	2696	7	0	0	0	0	multi-exon	FALSE	canonical	3	1036	junction_3	130.609362434534	1403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGGTGTGGTTGTACATG	NA	False	NA	-6	True	GATAAA	-13	NA	4957705	4929031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_4930772_4933822_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957348
ENSMUST00000020964.7	chr12	-	976	4	FSM	ENSMUSG00000020635.9	ENSMUST00000020964.7	976	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	6.34209919681348	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGTTGTGGGAGGTTCTT	NA	False	NA	0	True	AATAAA	-29	NA	4891591	4883173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_4883796_4884738_4884852_4888168_4888217_4891398
ENSMUST00000020974.7	chr12	-	1270	3	FSM	ENSMUSG00000020644.10	ENSMUST00000020974.7	1270	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCCGGGATTCTGAATGG	NA	False	NA	NA	False	AATAAA	-15	NA	25146091	25143799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_25144576_25145309_25145374_25145661
ENSMUST00000020977.4	chr12	-	1773	7	FSM	ENSMUSG00000020648.4	ENSMUST00000020977.4	1773	7	0	0	0	0	multi-exon	FALSE	canonical	2	86	junction_6	14.7016627933336	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGGTATGACTCGCCTGTA	9060	False	NA	-5	True	AATAAA	-17	NA	31704825	31690048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_31690944_31691500_31691728_31692762_31692886_31696619_31696738_31698764_31698887_31702289_31702441_31704688
ENSMUST00000020980.12	chr12	+	2193	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	0	0	0	0	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	3344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTTTGGGTAAAATGTAC	NA	False	NA	72	True	ATTAAA	-26	NA	24758239	24764145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
ENSMUST00000020997.15	chr12	+	1750	10	FSM	ENSMUSG00000020669.16	ENSMUST00000020997.15	1750	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	6.36153564813317	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTTTGTGTTCACTCAAT	8039	False	NA	16	True	AATAAA	-24	NA	30961666	31010161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_30962227_30972233_30972345_30974762_30974877_30976808_30976874_30989572_30989686_30990289_30990419_30991965_30992129_30992788_30992868_31008846_31008904_31009802
ENSMUST00000021001.10	chr12	-	3513	6	FSM	ENSMUSG00000020671.10	ENSMUST00000021001.10	3513	6	0	0	0	0	multi-exon	FALSE	canonical	3	1286	junction_2	62.4422933595492	487	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTTTGGTTTTCAT	NA	False	NA	-2	True	TATAAA	-19	NA	3359969	3297427	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_3299871_3302611_3302714_3303268_3303359_3306866_3307006_3314688_3314750_3359291
ENSMUST00000021018.11	chr11	+	2068	16	FSM	ENSMUSG00000020680.16	ENSMUST00000021018.11	2068	16	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	25.2651714597168	964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGAGTGCATTATTTGTC	8660	False	NA	41	True	AATAAA	-21	NA	83363917	83397569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750_83379872_83388087_83388123_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
ENSMUST00000021030.8	chr11	+	1867	9	FSM	ENSMUSG00000020691.14	ENSMUST00000021030.8	1867	9	0	0	0	0	multi-exon	TRUE	canonical	3	226	junction_6	21.0698243941424	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAATAAGAAA	NA	False	NA	NA	False	NA	NA	NA	105017250	105031220	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_105017433_105017601_105017694_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
ENSMUST00000021046.6	chr11	+	4011	18	FSM	ENSMUSG00000020705.7	ENSMUST00000021046.6	4011	18	0	0	0	0	multi-exon	FALSE	canonical	2	294	junction_3	62.7187383355908	807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTTTATCTTTTTATT	NA	False	NA	28	True	ATTAAA	-15	NA	106107751	106139965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_106107983_106114906_106115145_106115609_106115761_106119588_106119651_106121155_106121193_106121957_106122108_106123631_106123737_106125677_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
ENSMUST00000021048.7	chr11	-	3144	21	FSM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_7	76.5847732907789	1649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTTTTCTGATAGTTTA	NA	False	NA	-14	True	AATAAA	-13	NA	106146905	106139967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
ENSMUST00000021049.9	chr11	+	1316	11	FSM	ENSMUSG00000020708.13	ENSMUST00000021049.9	1316	11	0	0	0	0	multi-exon	FALSE	canonical	3	2261	junction_6	178.766439803449	19978	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4536	False	NA	15	True	AATAAA	-19	NA	106146979	106153946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
ENSMUST00000021060.6	chr11	-	1506	8	FSM	ENSMUSG00000020718.13	ENSMUST00000021060.6	1506	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	14.9652659072089	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	4319	False	NA	NA	False	AATAAA	-33	NA	106670341	106659078	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669784
ENSMUST00000021062.12	chr11	-	3559	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	0	0	0	0	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	7171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTCATTTATTTATTC	9616	False	NA	-8	True	AATAAA	-18	NA	106679358	106671180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
ENSMUST00000021063.13	chr11	+	1904	11	FSM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	0	0	0	0	multi-exon	FALSE	canonical	3	2673	junction_3	110.503800839609	15731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTGCGTGGAGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	107370309	107388999	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
ENSMUST00000021077.4	chr11	+	1925	6	FSM	ENSMUSG00000020733.4	ENSMUST00000021077.4	1925	6	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	12.6964561984831	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTCTGTGTCCTCCTTT	NA	False	NA	10	True	NA	NA	NA	115054166	115072007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_115054778_115067176_115067339_115068049_115068204_115069875_115069917_115070832_115070923_115071140
ENSMUST00000021078.3	chr11	-	1948	12	FSM	ENSMUSG00000018861.9	ENSMUST00000021078.3	1948	12	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_7	15.1766458254911	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGGCTGATAGCTACCA	NA	False	NA	0	True	AATAAA	-17	NA	115167876	115158849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115159281_115159403_115159575_115160270_115160443_115160522_115160723_115160840_115160926_115161148_115161257_115162087_115162190_115162482_115162597_115162702_115162826_115163012_115163109_115166904_115167009_115167634
ENSMUST00000021082.7	chr11	-	858	5	FSM	ENSMUSG00000020736.13	ENSMUST00000021082.7	858	5	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_4	11.1214882097676	1547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGATCTTTGATGCT	NA	False	NA	-8	True	AATAAA	-19	NA	115382688	115381245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115381571_115381678_115381794_115381963_115382025_115382096_115382198_115382432
ENSMUST00000021083.7	chr11	-	1375	5	FSM	ENSMUSG00000020737.13	ENSMUST00000021083.7	1375	5	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_2	125.475844288851	14635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCGTGTTTTGTCTTTCT	NA	False	NA	NA	False	AGTAAA	-19	NA	115405213	115388178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115389126_115391491_115391511_115392830_115392929_115393857_115394001_115405045
ENSMUST00000021084.10	chr11	-	1000	4	FSM	ENSMUSG00000020738.17	ENSMUST00000021084.10	1000	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1872.39424860851	10115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115427055	115413927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115414596_115421171_115421244_115425381_115425510_115426923
ENSMUST00000021085.11	chr11	+	2230	19	FSM	ENSMUSG00000020739.12	ENSMUST00000021085.11	2230	19	0	0	0	0	multi-exon	TRUE	canonical	3	862	junction_16	81.0315439264927	1809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGATGGATGTTTCCAC	NA	False	NA	91	True	AATGAA	-12	NA	115455259	115474811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
ENSMUST00000021087.14	chr11	-	1372	6	FSM	ENSMUSG00000020743.16	ENSMUST00000021087.14	1372	6	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	38.1030182531515	1955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503795	115498743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728_115502861_115503610
ENSMUST00000021089.11	chr11	-	2307	7	FSM	ENSMUSG00000020744.14	ENSMUST00000021089.11	2307	7	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_6	21.3053201493586	960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTGACTGCAGACCATT	NA	False	NA	-13	True	AATAAA	-17	NA	115518971	115505003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115515024_115515195_115518890
ENSMUST00000021090.14	chr11	-	2709	6	FSM	ENSMUSG00000059923.14	ENSMUST00000021090.14	2709	6	0	0	0	0	multi-exon	FALSE	canonical	3	859	junction_5	53.4714877294432	705	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGTCTTCATTTCTCC	4470	False	NA	-1	True	AATAAA	-19	NA	115599423	115534870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115536781_115537535_115537705_115540596_115540720_115546183_115546282_115589977_115590183_115599219
ENSMUST00000021114.5	chr11	-	1406	8	FSM	ENSMUSG00000020766.5	ENSMUST00000021114.5	1406	8	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_4	62.9907670591006	4614	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTTCCTACTGCAGG	NA	False	NA	9	True	NA	NA	NA	115903545	115899282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115899541_115899628_115899792_115899873_115900025_115900746_115900929_115901066_115901203_115901388_115901509_115901852_115902043_115903339
ENSMUST00000021119.9	chr11	-	1530	6	FSM	ENSMUSG00000020774.10	ENSMUST00000021119.9	1530	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	4.1182520563948	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAGTGATGACTGTGATA	NA	False	NA	NA	False	ATTAAA	-16	NA	73215460	73195817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_73196460_73199534_73199645_73204335_73204444_73210620_73210715_73212911_73213108_73215080
ENSMUST00000021130.7	chr11	+	902	4	FSM	ENSMUSG00000020778.13	ENSMUST00000021130.7	902	4	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_3	16.0277537068951	2098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGTGTGCTGATGCGG	9067	False	NA	7	True	AATAAA	-14	NA	116089680	116106144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116089810_116095670_116095806_116096436_116096595_116105664
ENSMUST00000021134.10	chr11	+	1979	11	FSM	ENSMUSG00000020781.15	ENSMUST00000021134.10	1979	11	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	26.8730348118704	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTCAATACTTACAGGGG	5932	False	NA	NA	False	ATTAAA	-21	NA	115705549	115713920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_115705646_115705740_115705906_115706000_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
ENSMUST00000021157.9	chr11	-	1161	4	FSM	ENSMUSG00000020801.9	ENSMUST00000021157.9	1161	4	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_2	14.0079342596338	3503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGATTGCTCCACTTTGA	NA	False	NA	-5	True	AATAAA	-15	NA	72106418	72102549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_72102904_72104602_72104700_72104963_72105042_72105786
ENSMUST00000021158.4	chr11	+	981	4	FSM	ENSMUSG00000020803.4	ENSMUST00000021158.4	981	4	0	0	0	0	multi-exon	FALSE	canonical	3	1302	junction_3	85.4959388249264	20735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAACTCAGGCAGTTTTC	NA	False	NA	NA	False	ATTAAA	-29	NA	72098372	72100841	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_72098595_72099078_72099161_72099555_72099632_72100240
ENSMUST00000021164.4	chr11	+	1513	6	FSM	ENSMUSG00000020808.4	ENSMUST00000021164.4	1513	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	92.1316449435263	1176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCATGTTTTTAGATATCT	NA	False	NA	14	True	AATAAA	-18	NA	71933280	71938196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_71933361_71933842_71934164_71935806_71936085_71936504_71936601_71937165_71937220_71937512
ENSMUST00000021181.13	chr11	-	779	5	FSM	ENSMUSG00000020831.19	ENSMUST00000021181.13	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_1	106.829303096107	3724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70126295_70126849_70127038_70127702_70127805_70128356_70128452_70128609
ENSMUST00000021183.4	chr11	-	2014	10	FSM	ENSMUSG00000020832.15	ENSMUST00000021183.4	2014	10	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_8	16.2890556304942	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATCTTTTATTTCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	77971209	77964201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_77965001_77965105_77965187_77965303_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
ENSMUST00000021197.10	chr11	+	2497	12	FSM	ENSMUSG00000020840.11	ENSMUST00000021197.10	2497	12	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_4	56.5853410915431	3237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCCGGCGTGTCTGGTC	NA	False	NA	30	True	AATAAA	-19	NA	76836329	76878205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
ENSMUST00000021226.14	chr11	-	3373	11	FSM	ENSMUSG00000020863.16	ENSMUST00000021226.14	3373	11	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	62.20843994186	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGATTGTCTGTGTCAT	NA	False	NA	-5	True	AATAAA	-23	NA	94212814	94181964	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_94183859_94183963_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ENSMUST00000021239.7	chr11	+	2837	7	FSM	ENSMUSG00000020869.9	ENSMUST00000021239.7	2837	7	0	0	0	0	multi-exon	FALSE	canonical	3	2480	junction_6	120.266371026983	1130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTTCTCCTTTGTGCTG	NA	False	NA	27	True	ATTAAA	-18	NA	94520592	94536042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_94520936_94522906_94522967_94525370_94525530_94525737_94525843_94529356_94529430_94532045_94532220_94534119
ENSMUST00000021243.16	chr11	+	1523	9	FSM	ENSMUSG00000020873.16	ENSMUST00000021243.16	1523	9	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	19.5923294939627	1772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGACCCTGCTGCTGC	NA	False	NA	21	True	AATAAA	-22	NA	95275517	95282602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95275940_95276626_95276731_95277311_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
ENSMUST00000021277.6	chr11	+	1950	8	FSM	ENSMUSG00000020897.13	ENSMUST00000021277.6	1950	8	0	0	0	0	multi-exon	FALSE	canonical	3	581	junction_1	36.6756327936728	870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	16	True	AATAAA	-26	NA	68936477	68942490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
ENSMUST00000021278.14	chr11	+	4164	23	FSM	ENSMUSG00000020898.19	ENSMUST00000021278.14	4164	23	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_14	54.4241833704208	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTTCATCTCTGAGGT	5086	False	NA	21	True	AATAAA	-21	NA	68906736	68927299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922239_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
ENSMUST00000021286.11	chr11	+	1638	5	FSM	ENSMUSG00000020903.14	ENSMUST00000021286.11	1638	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_4	126.986957991756	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCTCTGGAGTGTTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	67857294	67878433	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_67857344_67860597_67860698_67864058_67864154_67875388_67875500_67877150
ENSMUST00000021296.7	chr11	-	1574	4	FSM	ENSMUSG00000020921.7	ENSMUST00000021296.7	1574	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	22.1710521977545	1253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTTTGCTTCTGTCT	4465	False	NA	0	True	AATAAA	-16	NA	102047230	102043371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102044421_102045382_102045530_102046549_102046731_102047033
ENSMUST00000021297.6	chr11	-	2256	5	FSM	ENSMUSG00000020922.12	ENSMUST00000021297.6	2256	5	0	0	0	0	multi-exon	FALSE	canonical	3	919	junction_1	21.856063231973	1944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTCAGGTTTGTGC	6356	False	NA	-1	True	AATAAA	-23	NA	102076122	102053322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
ENSMUST00000021313.9	chr11	-	1744	5	FSM	ENSMUSG00000020935.9	ENSMUST00000021313.9	1744	5	0	0	0	0	multi-exon	FALSE	canonical	3	1121	junction_2	32.0965340808007	2305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAATTCCACTTGGCCT	8193	False	NA	-5	True	NA	NA	NA	102907994	102884872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102907875
ENSMUST00000021329.14	chr11	-	3266	6	FSM	ENSMUSG00000020946.14	ENSMUST00000021329.14	3266	6	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_1	54.6867442804927	1405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTGGCATTCTTTGTCT	NA	False	NA	2	True	AATAAA	-31	NA	103588724	103567674	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103580080_103580146_103588455
ENSMUST00000021332.10	chr12	-	1022	7	FSM	ENSMUSG00000020949.10	ENSMUST00000021332.10	1022	7	0	0	0	0	multi-exon	FALSE	canonical	3	9641	junction_1	417.22073161444	73162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGTGTGTTCTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	65120781	65109197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
ENSMUST00000021335.7	chr12	+	2096	25	FSM	ENSMUSG00000020952.11	ENSMUST00000021335.7	2096	25	0	0	0	0	multi-exon	TRUE	canonical	3	358	junction_5	42.0133700610757	1214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTTATTCTTGTTTGAA	NA	False	NA	15	True	AATAAA	-15	NA	51424362	51496884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462297_51462380_51469689_51469787_51472820_51472892_51474647_51474728_51478270_51478334_51480013_51480090_51486065_51486120_51489313_51489367_51491766_51491801_51492453_51492520_51494354_51494424_51496689
ENSMUST00000021359.7	chr12	-	1706	19	FSM	ENSMUSG00000020974.7	ENSMUST00000021359.7	1706	19	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_1	34.9372011570955	1138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTACACATTGTAGTTT	NA	False	NA	-5	True	AATAAA	-20	NA	69274969	69248546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_69248657_69249680_69249749_69250864_69251042_69253183_69253293_69254632_69254711_69254794_69254855_69255690_69255746_69256085_69256176_69256595_69256769_69258146_69258220_69258996_69259046_69259760_69259818_69260602_69260687_69262084_69262160_69268750_69268845_69269172_69269251_69269877_69269954_69273111_69273213_69274870
ENSMUST00000021370.10	chr12	-	3340	10	FSM	ENSMUSG00000020988.10	ENSMUST00000021370.10	3340	10	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_5	64.6821287356699	833	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTTATGATCATATT	NA	False	NA	0	True	AATAAA	-34	NA	69771647	69737206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69752538_69752574_69753897_69754061_69759395_69759528_69768085_69768238_69768851_69768968_69771427
ENSMUST00000021372.6	chr12	+	1485	5	FSM	ENSMUSG00000054894.7	ENSMUST00000021372.6	1485	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	45.2513811943901	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAAGGCTAGTCTTTAC	NA	False	NA	2	True	AATAAA	-14	NA	69771735	69791432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_69771789_69784724_69784836_69787672_69787882_69788418_69788591_69790492
ENSMUST00000021379.8	chr12	+	1588	10	FSM	ENSMUSG00000060121.16	ENSMUST00000021379.8	1588	10	0	0	0	0	multi-exon	FALSE	canonical	1	279	junction_3	161.403565980158	5755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTTAGTTTAATTTCAC	NA	False	NA	NA	False	TTTAAA	-6	NA	59060178	59075256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
ENSMUST00000021380.10	chr12	-	1255	6	FSM	ENSMUSG00000020993.10	ENSMUST00000021380.10	1255	6	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_5	16.4146276229466	1368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCATTAATTTAATCA	NA	False	NA	31	True	AATAGA	-14	NA	59108247	59089877	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_59090463_59091038_59091133_59094908_59094993_59097053_59097172_59098426_59098495_59107941
ENSMUST00000021381.6	chr12	+	3485	9	FSM	ENSMUSG00000020994.6	ENSMUST00000021381.6	3485	9	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_8	34.8308412186671	1045	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACAAATATCTTCATTTA	NA	False	NA	9	True	ATTAAA	-43	NA	59113669	59120784	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
ENSMUST00000021405.8	chr16	+	950	5	FSM	ENSMUSG00000021018.9	ENSMUST00000021405.8	950	5	0	0	0	0	multi-exon	FALSE	canonical	3	628	junction_4	109.533955922353	10289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTCCATTGTCATTGC	904	False	NA	15	True	ATTAAA	-16	NA	20536414	20541017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_20536745_20537573_20537658_20537740_20537835_20539268_20539353_20540659
ENSMUST00000021406.6	chr12	-	1105	8	FSM	ENSMUSG00000062198.6	ENSMUST00000021406.6	1105	8	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_4	27.3898536256157	919	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGCTCTTTTATTTGT	NA	False	NA	1	True	AATAAA	-40	NA	55126895	55092445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55126765
ENSMUST00000021412.9	chr12	+	1042	7	FSM	ENSMUSG00000021024.15	ENSMUST00000021412.9	1042	7	0	0	0	0	multi-exon	FALSE	canonical	3	2423	junction_5	124.008960249743	26392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCGGTGCATCCTGTCTTT	NA	False	NA	16	True	AATAAA	-17	NA	55445559	55465239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_55445777_55454253_55454349_55454786_55454869_55456911_55457068_55458971_55459151_55461188_55461284_55465021
ENSMUST00000021413.9	chr12	-	1578	6	FSM	ENSMUSG00000021025.9	ENSMUST00000021413.9	1578	6	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_5	20.9914268214431	1346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGTCCCGCTCGTTTGC	NA	False	NA	-2	True	ATTAAA	-17	NA	55539432	55536194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_55536755_55537190_55537452_55537555_55537645_55537904_55538116_55538454_55538564_55539084
ENSMUST00000021416.9	chr12	-	1512	9	FSM	ENSMUSG00000021028.9	ENSMUST00000021416.9	1512	9	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_1	38.7193427113633	973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATGTCTTTTTTACTGT	NA	False	NA	NA	False	AATAAA	-33	NA	56392679	56375087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_56375585_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
ENSMUST00000021425.8	chr12	+	1377	9	FSM	ENSMUSG00000021037.8	ENSMUST00000021425.8	1377	9	0	0	0	0	multi-exon	TRUE	canonical	3	2699	junction_7	143.152890295656	12452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCATTTCTTACAATCTAT	NA	False	NA	-2	True	AGTAAA	-16	NA	87313471	87320753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
ENSMUST00000021428.9	chr12	-	2232	14	FSM	ENSMUSG00000021039.10	ENSMUST00000021428.9	2232	14	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_13	97.7330623652505	1711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTGTTTATTTAGTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	87519044	87496679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
ENSMUST00000021443.7	chr12	+	3241	28	FSM	ENSMUSG00000021048.8	ENSMUST00000021443.7	3241	28	0	0	0	0	multi-exon	TRUE	canonical	3	837	junction_20	135.484134190258	959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	7911	False	NA	9	True	AATAAA	-17	NA	76302071	76366577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
ENSMUST00000021471.13	chr12	+	2795	8	FSM	ENSMUSG00000021072.13	ENSMUST00000021471.13	2795	8	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_7	45.1044140108849	902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTGGTGTTCTCATAAG	NA	False	NA	13	True	ATTAAA	-16	NA	70499868	70514814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_70500095_70502785_70502902_70503354_70503401_70505552_70505682_70507118_70507165_70507252_70507355_70511173_70511241_70512751
ENSMUST00000021486.10	chr12	-	794	4	FSM	ENSMUSG00000021079.17	ENSMUST00000021486.10	794	4	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	97.112763779479	870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71183447	71169946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71183328
ENSMUST00000021539.16	chr12	+	1742	15	FSM	ENSMUSG00000021115.16	ENSMUST00000021539.16	1742	15	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_12	308.222032678671	2677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAAGCGTTTATTGAATG	NA	False	NA	23	True	AATAAA	-29	NA	105976574	106041668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106037828_106037901_106039877_106039938_106041265
ENSMUST00000021544.8	chr12	-	1583	9	FSM	ENSMUSG00000021118.8	ENSMUST00000021544.8	1583	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_6	8.60868021243675	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATGGTTCTTGTAGTTA	NA	False	NA	0	True	AATAAA	-21	NA	78953738	78935464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_78936082_78936685_78936765_78938902_78938987_78940850_78940953_78941161_78941350_78941646_78941739_78942905_78943088_78946828_78946994_78953664
ENSMUST00000021574.8	chr13	-	2442	16	FSM	ENSMUSG00000021149.9	ENSMUST00000021574.8	2442	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	264.705085372802	3028	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	AATAAA	-41	NA	9046086	9022515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037996_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9045984
ENSMUST00000021594.5	chr12	+	2019	15	FSM	ENSMUSG00000021177.17	ENSMUST00000021594.5	2019	15	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_14	30.3943469502243	757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTGTACAGGCCTGG	NA	False	NA	14	True	ATTAAA	-14	NA	99857431	99921473	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
ENSMUST00000021595.10	chr12	+	1591	11	FSM	ENSMUSG00000021178.10	ENSMUST00000021595.10	1591	11	0	0	0	0	multi-exon	FALSE	canonical	3	1446	junction_1	298.758363899657	10765	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGGGAAGAGTTCATTTT	3973	False	NA	12	True	NA	NA	NA	100076412	100089664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_100076471_100078589_100078644_100079314_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085331_100085522_100086245_100086398_100087251_100087407_100089316
ENSMUST00000021607.9	chr12	-	1990	14	FSM	ENSMUSG00000021190.15	ENSMUST00000021607.9	1990	14	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_3	48.4071734133467	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTTGTTTCTGGACTCT	7489	False	NA	-17	True	AAAACA	-15	NA	102406072	102360356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_102360872_102361100_102361169_102361902_102362074_102364441_102364643_102366163_102366254_102366396_102366516_102368143_102368211_102368928_102368992_102369685_102369762_102370518_102370605_102372054_102372137_102379723_102379822_102389843_102390015_102405889
ENSMUST00000021610.7	chr12	+	1883	8	FSM	ENSMUSG00000021194.7	ENSMUST00000021610.7	1883	8	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_1	6.51841974088562	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTTTGATTTATTTTCG	NA	False	NA	24	True	AATAAA	-18	NA	102521227	102531287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_102521430_102522143_102522191_102524724_102524819_102525547_102525617_102527603_102527763_102527925_102528343_102528856_102529333_102530868
ENSMUST00000021614.14	chr13	-	2679	22	FSM	ENSMUSG00000021196.15	ENSMUST00000021614.14	2679	22	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_7	371.222751277127	1865	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCCCATGGTACTTGG	NA	False	NA	-14	True	ATTAAA	-10	NA	6698761	6631217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6643136_6643290_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
ENSMUST00000021620.13	chr12	+	2791	6	FSM	ENSMUSG00000021203.16	ENSMUST00000021620.13	2791	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	8.60232526704263	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCAGTCTGGCTTCTTAA	8176	False	NA	NA	False	ATTAAA	-16	NA	103354956	103372604	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_103355133_103366454_103366551_103367207_103367327_103369075_103369161_103369492_103369688_103370484
ENSMUST00000021645.9	chr12	+	2008	14	FSM	ENSMUSG00000021222.10	ENSMUST00000021645.9	2008	14	0	0	0	0	multi-exon	TRUE	canonical	3	216	junction_9	23.528907060372	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTCTAATTTTGCCAAA	NA	False	NA	10	True	NA	NA	NA	83567239	83588689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_83567392_83572917_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580640_83580785_83581633_83581684_83582673_83582754_83584486_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
ENSMUST00000021661.13	chr12	+	1602	12	FSM	ENSMUSG00000021235.14	ENSMUST00000021661.13	1602	12	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_6	16.3656564409681	1961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTTTTCCTCTTCTGA	NA	False	NA	17	True	AATAAA	-17	NA	84408741	84420570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
ENSMUST00000021667.7	chr12	+	883	4	FSM	ENSMUSG00000021241.8	ENSMUST00000021667.7	883	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	133.217449641137	3161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTTCTTATCGTGTTTTC	NA	False	NA	12	True	TATAAA	-15	NA	84820024	84821859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84820146_84820348_84820452_84820566_84820683_84821316
ENSMUST00000021669.15	chr12	+	749	8	FSM	ENSMUSG00000021243.15	ENSMUST00000021669.15	749	8	0	0	0	0	multi-exon	FALSE	canonical	3	1900	junction_1	151.77601649692	9692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTTGTCTCAATTCTTA	4629	False	NA	23	True	ATTAAA	-25	NA	85017670	85030077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_85017740_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
ENSMUST00000021676.12	chr12	-	1169	5	FSM	ENSMUSG00000021252.12	ENSMUST00000021676.12	1169	5	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_4	65.9104506129339	4816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCGTCTGTGTACTTTGGC	NA	False	NA	-4	True	AATAAA	-21	NA	85871296	85862221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_85862968_85863089_85863209_85866252_85866344_85868861_85869023_85871244
ENSMUST00000021698.13	chr12	-	2852	11	FSM	ENSMUSG00000021270.14	ENSMUST00000021698.13	2852	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_10	4154.7402337571	48209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGAATGTGTCTTTTCT	NA	False	NA	-5	True	GATAAA	-21	NA	110662723	110657461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662215_110662685
ENSMUST00000021714.9	chr12	+	1308	7	FSM	ENSMUSG00000021286.9	ENSMUST00000021714.9	1308	7	0	0	0	0	multi-exon	FALSE	canonical	3	470	junction_5	111.029525602677	4974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCAGGCTCTGGCCTCA	NA	False	NA	16	True	ATTAAA	-17	NA	111780603	111794820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111793976_111794120_111794251
ENSMUST00000021715.6	chr12	-	2422	8	FSM	ENSMUSG00000021287.13	ENSMUST00000021715.6	2422	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_7	12.8809303758284	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAACACTTGCAAATTATT	NA	False	NA	NA	False	AATAAA	-22	NA	111780275	111769626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_111771107_111771177_111771225_111771348_111771562_111774266_111774422_111776185_111776399_111777291_111777430_111778494_111778654_111780258
ENSMUST00000021719.7	chr12	-	366	4	FSM	ENSMUSG00000021290.7	ENSMUST00000021719.7	366	4	0	0	0	0	multi-exon	TRUE	canonical	3	2424	junction_1	129.659382828839	35513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGCTTCCCCTGAGTA	NA	False	NA	-7	True	AATAAA	-18	NA	111933411	111927808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_111927973_111928866_111928891_111929663_111929788_111933357
ENSMUST00000021726.8	chr12	+	1777	13	FSM	ENSMUSG00000011148.15	ENSMUST00000021726.8	1777	13	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	10.1005362893924	296	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCACCGAGAGGTCATTAC	NA	False	NA	NA	False	AATAAA	-19	NA	112586478	112607773	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_112586745_112594734_112594838_112598687_112598751_112599128_112599180_112599502_112599570_112600577_112600686_112600813_112600896_112601034_112601162_112601864_112602020_112602827_112602953_112604618_112604717_112606045_112606196_112607391
ENSMUST00000021790.7	chr13	-	914	6	Antisense	novelGene_ENSMUSG00000021361.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11363	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCGTGCGCTGCGTCCTAG	8939	False	NA	NA	False	NA	NA	NA	41176062	41169767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr13_-_41169875_41170590_41170650_41171181_41171259_41171831_41171934_41174594_41174683_41175581
ENSMUST00000021797.9	chr13	-	1239	8	FSM	ENSMUSG00000021368.16	ENSMUST00000021797.9	1239	8	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_7	94.4833426632246	1591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGCCTGGCGTGGCCAT	NA	False	NA	-21	True	AGTAAA	-12	NA	43324977	43305219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_43305457_43306545_43306676_43308164_43308311_43312738_43312877_43318754_43318943_43322249_43322331_43323277_43323424_43324804
ENSMUST00000021806.11	chr13	-	2708	9	FSM	ENSMUSG00000021376.12	ENSMUST00000021806.11	2708	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_8	22.6436387314407	1428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGAGCTTGGTAATTT	NA	False	NA	NA	False	AATAAA	-16	NA	47196686	47177018	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196579
ENSMUST00000021807.13	chr13	-	2556	11	FSM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	0	0	0	0	multi-exon	FALSE	canonical	3	1333	junction_10	113.482333426838	1011	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTTGTATTTAATCTTT	NA	False	NA	-15	True	AATAAA	-20	NA	47259666	47238257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
ENSMUST00000021818.9	chr13	-	1144	8	FSM	ENSMUSG00000021391.11	ENSMUST00000021818.9	1144	8	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_6	22.1387092889263	1271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAGTGCTTTGTACAGTT	NA	False	NA	-4	True	AATAAA	-21	NA	49806261	49617498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49794701_49794791_49801041_49801131_49803596_49803776_49806058
ENSMUST00000021843.13	chr13	+	1063	8	FSM	ENSMUSG00000046949.17	ENSMUST00000021843.13	1063	8	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	70.4179939898249	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTTGCACTGTATTAG	NA	False	NA	13	True	AATACA	-25	NA	34148733	34169629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_34148784_34150027_34150110_34152172_34152261_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
ENSMUST00000021854.14	chr13	-	1746	10	FSM	ENSMUSG00000021417.16	ENSMUST00000021854.14	1746	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_9	45.5959170795038	498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTTAAGAATTCATGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	35178264	35161731	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177214_35177812
ENSMUST00000021866.10	chr13	+	2738	17	FSM	ENSMUSG00000021428.10	ENSMUST00000021866.10	2738	17	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	18.4889113727661	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTTGCATTCTTGCTA	4488	False	NA	18	True	AATAAA	-19	NA	38220970	38245409	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241233_38242663_38242718_38243915_38244069_38244730
ENSMUST00000021903.3	chr13	+	1071	4	FSM	ENSMUSG00000021453.3	ENSMUST00000021903.3	1071	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	4.02768199119819	252	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAACTTAATGCCTTTT	NA	False	NA	NA	False	AATAAA	-8	NA	52000713	52002504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_52000869_52001387_52001490_52001591_52001806_52001904
ENSMUST00000021907.9	chr13	-	1354	7	FSM	ENSMUSG00000021456.9	ENSMUST00000021907.9	1354	7	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_2	7.5	906	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTTATGGGTCTTCTG	NA	False	NA	2	True	AATAAA	-20	NA	63006236	62984690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_62985095_62988084_62988205_62989599_62989738_62997190_62997332_63001787_63001881_63002717_63002881_63005941
ENSMUST00000021913.16	chr13	-	1320	10	FSM	ENSMUSG00000021460.18	ENSMUST00000021913.16	1320	10	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_3	77.7090172246741	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGTTATACCAAATGT	NA	False	NA	-14	True	AATAAA	-22	NA	53083697	52989154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53041276_53041334_53043138_53043232_53052685_53052773_53073036_53073125_53073234_53073303_53083490
ENSMUST00000021930.10	chr13	+	2783	11	FSM	ENSMUSG00000021474.10	ENSMUST00000021930.10	2783	11	0	0	0	0	multi-exon	FALSE	canonical	3	779	junction_1	55.358919787149	3065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTGTCTCTTACTTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	54225887	54262361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
ENSMUST00000021933.8	chr13	+	1971	8	Antisense	novelGene_ENSMUSG00000021477.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23432	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGAACAGCGCCGGGCTC	757	False	NA	NA	False	NA	NA	NA	64511027	64518120	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr13_+_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
ENSMUST00000021941.8	chr13	-	1327	6	FSM	ENSMUSG00000021485.15	ENSMUST00000021941.8	1327	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	5.62138772902208	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCGTACAGTCTATCACC	6155	False	NA	-7	True	NA	NA	NA	55477571	55472980	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_55473712_55473825_55474010_55476182_55476298_55476426_55476457_55477081_55477188_55477410
ENSMUST00000021956.9	chr13	-	2205	17	FSM	ENSMUSG00000021494.10	ENSMUST00000021956.9	2205	17	0	0	0	0	multi-exon	FALSE	canonical	3	642	junction_9	44.9861089671023	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTCTCTCACCCACCTG	NA	False	NA	1	True	ATTAAA	-27	NA	55684471	55678222	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
ENSMUST00000021959.11	chr13	+	1527	5	FSM	ENSMUSG00000021497.11	ENSMUST00000021959.11	1527	5	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_2	13.4257215820976	1972	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAAGTGGTTTCGCTTGT	NA	False	NA	18	True	AATAAA	-14	NA	55862462	55874040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_55862658_55865604_55866081_55869391_55869556_55872320_55872452_55873479
ENSMUST00000021963.5	chr13	+	1382	4	FSM	ENSMUSG00000021501.5	ENSMUST00000021963.5	1382	4	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	4.49691252107735	431	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAGAAGTCTGTACATT	NA	False	NA	NA	False	AATAAA	-21	NA	55770817	55780224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_55771070_55772523_55772985_55776389_55776456_55779621
ENSMUST00000021991.11	chr13	-	1479	8	FSM	ENSMUSG00000021519.12	ENSMUST00000021991.11	1479	8	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_6	16.4005973012185	1751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTTTCAATATTA	377	False	NA	NA	False	AATAAA	-18	NA	67081152	67060181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67080998
ENSMUST00000021993.5	chr13	+	535	4	NIC	ENSMUSG00000074826.11	novel	2067	3	NA	NA	-4297	-3788	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	83765	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCCTGGATACTTTAGGAA	NA	False	NA	NA	False	NA	NA	NA	67048680	67053442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr13_+_67048891_67049465_67049633_67050793_67050866_67053356
ENSMUST00000021997.8	chr13	+	2591	4	FSM	ENSMUSG00000058900.6	ENSMUST00000021997.8	2591	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	10.6144555520604	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGTATCTCATCTTA	NA	False	NA	NA	False	AATAAA	-25	NA	67321245	67332108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_67321318_67324511_67324639_67325128_67325225_67329812
ENSMUST00000022030.11	chr13	+	2045	9	FSM	ENSMUSG00000021548.11	ENSMUST00000022030.11	2045	9	0	0	0	0	multi-exon	FALSE	canonical	3	824	junction_5	83.2840583485219	3029	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCAGTGTTTTGTTTTGA	NA	False	NA	8	True	AATAAA	-19	NA	85337526	85361842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
ENSMUST00000022060.7	chr13	-	1131	6	FSM	ENSMUSG00000021576.7	ENSMUST00000022060.7	1131	6	0	0	0	0	multi-exon	FALSE	canonical	3	601	junction_2	85.1666601435092	6079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGGCTGGTTTTTTGCT	NA	False	NA	1	True	AATAAA	-25	NA	74465440	74451627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_74452168_74453659_74453770_74457802_74457962_74459786_74459832_74464448_74464511_74465225
ENSMUST00000022062.8	chr13	-	2900	15	FSM	ENSMUSG00000021577.15	ENSMUST00000022062.8	2900	15	0	0	0	0	multi-exon	FALSE	canonical	3	1480	junction_7	176.694897308026	5927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	NA	False	NA	-8	True	NA	NA	NA	74498399	74470372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
ENSMUST00000022082.8	chr13	+	1345	3	FSM	ENSMUSG00000021591.9	ENSMUST00000022082.8	1345	3	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_1	16	1257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTTTGTCCGGTTCTGT	NA	False	NA	30	True	ATTAAA	-22	NA	75987986	75998270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_75988295_75995288_75995418_75997362
ENSMUST00000022089.10	chr13	+	913	4	FSM	ENSMUSG00000021598.10	ENSMUST00000022089.10	913	4	0	0	0	0	multi-exon	FALSE	canonical	3	786	junction_3	16.1314048434171	10590	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCATGTAATTCTTAAAAT	NA	False	NA	27	True	AATAAA	-23	NA	69957959	69964223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_69958172_69959725_69959810_69961822_69961926_69963709
ENSMUST00000022097.6	chr13	-	568	4	FSM	ENSMUSG00000021606.9	ENSMUST00000022097.6	568	4	0	0	0	0	multi-exon	FALSE	canonical	3	2374	junction_2	33.95094500403	49512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGAGTTGTTTCTTCCTT	NA	False	NA	-3	True	AATAAA	-19	NA	73476661	73467992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_73468180_73468412_73468536_73475534_73475589_73476457
ENSMUST00000022098.10	chr13	+	923	2	FSM	ENSMUSG00000021607.10	ENSMUST00000022098.10	923	2	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_1	0	4465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGAGTAGTAGTGTTCT	NA	False	NA	13	True	ATTAAA	-26	NA	73479106	73480297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_73479211_73479478
ENSMUST00000022115.14	chr13	-	1540	8	FSM	ENSMUSG00000021615.14	ENSMUST00000022115.14	1540	8	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	13.6993966796993	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAATGTTATTTAACTG	NA	False	NA	-7	True	AATAAA	-14	NA	90237727	89997039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_89997583_90089080_90089229_90139191_90139284_90140572_90140726_90149036_90149204_90210127_90210304_90219659_90219809_90237615
ENSMUST00000022121.13	chr13	-	1541	6	FSM	ENSMUSG00000021621.16	ENSMUST00000022121.13	1541	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	29.1108227296997	1098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTTGTTGAACTGATCA	NA	False	NA	NA	False	AATAAA	-16	NA	91955824	91944651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_91945374_91946941_91947011_91948729_91948823_91948984_91949136_91953869_91954280_91955728
ENSMUST00000022145.15	chr13	+	601	3	FSM	ENSMUSG00000021643.16	ENSMUST00000022145.15	601	3	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	3	709	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTGAATATTATTTTTAT	NA	False	NA	NA	False	AATAAA	-25	NA	100244519	100250746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_100244738_100245530_100245640_100250472
ENSMUST00000022147.15	chr13	+	1222	9	FSM	ENSMUSG00000021645.17	ENSMUST00000022147.15	1222	9	0	0	0	0	multi-exon	TRUE	canonical	3	544	junction_6	97.8154352594722	6400	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTTGACTTTATAGATA	NA	False	NA	17	True	AATAAA	-13	NA	100261359	100274198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_100261474_100263094_100263167_100263377_100263498_100264312_100264514_100264722_100264870_100267587_100267684_100268863_100268975_100272196_100272248_100273888
ENSMUST00000022153.8	chr13	-	1704	10	FSM	ENSMUSG00000021650.8	ENSMUST00000022153.8	1704	10	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_5	28.5894740191448	939	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGGGTTGTGTTTCTTTTC	NA	False	NA	-11	True	AATAAA	-16	NA	99481213	99456154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_99456902_99458068_99458183_99463145_99463221_99466459_99466574_99468943_99469036_99469395_99469475_99473170_99473289_99476408_99476539_99479820_99479914_99481071
ENSMUST00000022163.15	chr13	-	1091	6	FSM	ENSMUSG00000021660.15	ENSMUST00000022163.15	1091	6	0	0	0	0	multi-exon	FALSE	canonical	3	579	junction_5	2432.68485422999	5291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTTATCATTTTACTTA	NA	False	NA	-16	True	AATAAA	-37	NA	98453475	98446403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453132
ENSMUST00000022164.16	chr13	+	1755	9	FSM	ENSMUSG00000021661.17	ENSMUST00000022164.16	1755	9	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	23.3559414282533	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399749	98410426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98409885
ENSMUST00000022169.10	chr13	-	1905	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	0	0	0	0	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	3324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGCTGCCCTGTGTGGAT	NA	False	NA	1	True	AATAAA	-27	NA	97334865	97312838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
ENSMUST00000022176.15	chr13	-	4425	20	FSM	ENSMUSG00000021670.15	ENSMUST00000022176.15	4425	20	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_19	35.2932314809179	511	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGTGTAAGCAGTGGCT	NA	False	NA	-5	True	AGTAAA	-22	NA	96807444	96785474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
ENSMUST00000022185.10	chr13	-	2741	2	FSM	ENSMUSG00000021678.10	ENSMUST00000022185.10	2741	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACAAGTT	9826	False	NA	NA	False	AATAAA	-16	NA	95661735	95648239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_95650790_95661544
ENSMUST00000022203.10	chr13	+	2051	12	FSM	ENSMUSG00000021692.10	ENSMUST00000022203.10	2051	12	0	0	0	0	multi-exon	FALSE	canonical	3	504	junction_4	50.5395680025492	4302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCGCCTACAGTTTTTCC	NA	False	NA	NA	False	AGTAAA	-13	NA	107083666	107096268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086125_107086199_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
ENSMUST00000022224.16	chr13	-	2342	13	FSM	ENSMUSG00000021711.18	ENSMUST00000022224.16	2342	13	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_6	196.200152905139	3183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGATTTTTTTCTTTC	NA	False	NA	-2	True	AATAAA	-42	NA	104314931	104279824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104288672_104288691_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
ENSMUST00000022225.12	chr13	+	3416	11	FSM	ENSMUSG00000021712.16	ENSMUST00000022225.12	3416	11	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_1	34.1	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTGACTGTGACGTATA	NA	False	NA	11	True	AATATA	-25	NA	104315304	104339525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_104315470_104317581_104317745_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
ENSMUST00000022226.6	chr13	-	2342	11	FSM	ENSMUSG00000021713.10	ENSMUST00000022226.6	2342	11	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_6	27.1368752806951	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATACGTGTCAAATGAC	NA	False	NA	-13	True	TATAAA	-11	NA	104365330	104341631	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_104342156_104343606_104343790_104344504_104344587_104346121_104346304_104350033_104350224_104353596_104353788_104356544_104356993_104359345_104359467_104359599_104359701_104361857_104361961_104365113
ENSMUST00000022228.13	chr13	-	2071	14	FSM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_8	84.1316241226496	4778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGCCTCCCGCTTTATT	NA	False	NA	1	True	AATAAA	-37	NA	104953461	104767647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
ENSMUST00000022230.15	chr13	+	2365	5	FSM	ENSMUSG00000021716.15	ENSMUST00000022230.15	2365	5	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	17.2536228079786	3437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATAAAAGTCATTTTTA	NA	False	NA	NA	False	AATAAA	-18	NA	104953684	104975782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_104953875_104963562_104963611_104969361_104969506_104970755_104970829_104973872
ENSMUST00000022256.5	chr14	+	1387	8	FSM	ENSMUSG00000021737.5	ENSMUST00000022256.5	1387	8	0	0	0	0	multi-exon	FALSE	canonical	3	1151	junction_1	36.7689975886408	9638	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTCTTAAACATACA	NA	False	NA	25	True	AATAAA	-27	NA	8348778	8357589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_8349025_8349570_8349777_8352792_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
ENSMUST00000022268.10	chr14	+	1513	10	FSM	ENSMUSG00000021748.10	ENSMUST00000022268.10	1513	10	0	0	0	0	multi-exon	FALSE	canonical	3	2290	junction_6	170.664134819183	14436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCTTGGAGTACTATT	NA	False	NA	NA	False	AATAAA	-16	NA	14296747	14303777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
ENSMUST00000022281.5	chr13	-	3689	27	FSM	ENSMUSG00000016018.5	ENSMUST00000022281.5	3689	27	0	0	0	0	multi-exon	TRUE	canonical	3	524	junction_21	59.6473487509525	1125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTGAATTTCAGGAACC	7236	False	NA	NA	False	AAAAAG	-14	NA	113063932	113003951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_113004530_113005544_113005650_113009432_113009596_113011129_113011187_113012969_113013076_113017512_113017677_113019633_113019823_113023288_113023400_113023968_113024098_113027812_113027882_113028421_113028595_113032006_113032158_113035298_113035425_113038006_113038109_113039932_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113046349_113046449_113047443_113047569_113049633_113049725_113050889_113051065_113054122_113054236_113055101_113055165_113056893_113056961_113058163_113058302_113063763
ENSMUST00000022282.6	chr13	-	1042	3	FSM	ENSMUSG00000021760.6	ENSMUST00000022282.6	1042	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	4	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAAGTGCATTTTTTTTT	NA	False	NA	NA	False	AATAAA	-23	NA	113182944	113179292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_113179834_113181965_113182228_113182705
ENSMUST00000022292.10	chr14	+	1574	6	FSM	ENSMUSG00000021770.12	ENSMUST00000022292.10	1574	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	7.55248303539968	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGTCCCAGGCTCCTG	2614	False	NA	NA	False	AATATA	-25	NA	21800598	21843370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_21800849_21825030_21825624_21830153_21830250_21833746_21833865_21842471_21842623_21843004
ENSMUST00000022294.15	chr14	-	1199	5	FSM	ENSMUSG00000021772.16	ENSMUST00000022294.15	1199	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	46.4885738649832	911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATACCATGGGAACTCTT	NA	False	NA	-39	True	AATAAA	-14	NA	4198469	4189258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_4189750_4191150_4191393_4191594_4191853_4192889_4193001_4198372
ENSMUST00000022295.4	chr14	-	981	6	FSM	ENSMUSG00000021773.12	ENSMUST00000022295.4	981	6	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_1	9.09065454189081	815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGAGCATCCTCTTCC	NA	False	NA	-10	True	AATAAA	-17	NA	21898962	21897246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_21897496_21897681_21897816_21897940_21898189_21898277_21898384_21898608_21898737_21898846
ENSMUST00000022296.7	chr14	+	1408	6	FSM	ENSMUSG00000021774.14	ENSMUST00000022296.7	1408	6	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_1	27.2073519475895	3296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGCTGTGTTCATTTC	NA	False	NA	24	True	AATAAA	-21	NA	4137836	4186974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_4138010_4138561_4138747_4143265_4143317_4184427_4184561_4185274_4185423_4186256
ENSMUST00000022317.15	chr14	-	1537	6	FSM	ENSMUSG00000021792.16	ENSMUST00000022317.15	1537	6	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_5	72.4911029023562	1624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATCACCTCTGTGCACA	NA	False	NA	-22	True	AATAAA	-11	NA	40735732	40715696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726161_40735654
ENSMUST00000022340.5	chr14	+	4876	21	FSM	ENSMUSG00000021806.5	ENSMUST00000022340.5	4876	21	0	0	0	0	multi-exon	FALSE	canonical	3	1309	junction_14	132.834897523204	2189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGGTCTAAATATCTAT	NA	False	NA	24	True	AATAAA	-16	NA	19801332	19861855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021_19861135_19861253
ENSMUST00000022345.7	chr14	-	1631	5	FSM	ENSMUSG00000021811.8	ENSMUST00000022345.7	1631	5	0	0	0	0	multi-exon	TRUE	canonical	3	896	junction_2	62.1711347813437	3592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTATGTGTTTTGAAC	NA	False	NA	NA	False	ATTAAA	-23	NA	20438978	20434705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_20435547_20435867_20435955_20438024_20438280_20438367_20438509_20438671
ENSMUST00000022380.9	chr14	+	2234	14	FSM	ENSMUSG00000021832.9	ENSMUST00000022380.9	2234	14	0	0	0	0	multi-exon	FALSE	canonical	3	1632	junction_5	93.5359944006622	11538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATAAATGATCCAGCTAGG	NA	False	NA	NA	False	AATAAA	-39	NA	45567244	45587162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
ENSMUST00000022416.15	chr14	+	2394	15	FSM	ENSMUSG00000021866.16	ENSMUST00000022416.15	2394	15	0	0	0	0	multi-exon	TRUE	canonical	3	387	junction_6	25.4603533329122	662	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTGCCAGCATGTTT	336	False	NA	26	True	AATAAA	-34	NA	25842579	25887228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
ENSMUST00000022419.7	chr14	+	1549	6	FSM	ENSMUSG00000021868.8	ENSMUST00000022419.7	1549	6	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_3	21.4532048887806	426	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGTCTCTGGTTTTGGA	392	False	NA	NA	False	AATAAA	-18	NA	25694593	25700892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_25694848_25695896_25695928_25696427_25696517_25697996_25698094_25698689_25698766_25699890
ENSMUST00000022429.9	chr14	+	2165	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	0	0	0	0	multi-exon	FALSE	canonical	3	1593	junction_4	101.482215190643	2750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	1686	False	NA	NA	False	NA	NA	NA	26359228	26378413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
ENSMUST00000022458.11	chr14	+	3460	17	FSM	ENSMUSG00000021901.11	ENSMUST00000022458.11	3460	17	0	0	0	0	multi-exon	TRUE	canonical	3	305	junction_12	31.9899886683318	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGAGGTCGGTAGGCTGG	NA	False	NA	25	True	AATAAA	-32	NA	30973406	30981901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_30973612_30973706_30973737_30973856_30973912_30974884_30975018_30975412_30975533_30975989_30976052_30976123_30976267_30976517_30976597_30977042_30977167_30977469_30977618_30978067_30978253_30978617_30978749_30979245_30979725_30979837_30979999_30980240_30980334_30980414_30980488_30980662
ENSMUST00000022470.15	chr14	+	4413	18	FSM	ENSMUSG00000021911.17	ENSMUST00000022470.15	4413	18	0	0	0	0	multi-exon	FALSE	canonical	1	134	junction_15	83.8243756407233	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTGTTAGATGCTCTGA	NA	False	NA	NA	False	AATAAA	-23	NA	31923905	32019507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_31924423_31930113_31930181_31930668_31931632_31932411_31932596_31936280_31936404_31936523_31936608_31939616_31939692_31960487_31960581_31964145_31964304_31971973_31972054_31976492_31976554_31980034_31980111_31984640_31984789_31993586_31993666_31996806_31996916_32006055_32006162_32017155_32017285_32018146
ENSMUST00000022496.9	chr14	-	4069	17	FSM	ENSMUSG00000021929.10	ENSMUST00000022496.9	4069	17	0	0	0	0	multi-exon	TRUE	canonical	2	379	junction_16	73.5790391347971	376	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATTGAAAGACTTATT	6546	False	NA	-12	True	AATAAA	-22	NA	61677323	61602659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_61605179_61605576_61605672_61607831_61607995_61608150_61608223_61608319_61608425_61610406_61610536_61611732_61611865_61620683_61620729_61622036_61622207_61622551_61622639_61624872_61624959_61628612_61628709_61628847_61628901_61628996_61629027_61629204_61629295_61640446_61640492_61677171
ENSMUST00000022499.13	chr14	-	1494	11	Antisense	novelGene_ENSMUSG00000021932.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7894	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCCTGCCTCCATTTCC	NA	False	NA	NA	False	NA	NA	NA	62610441	62569516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr14_-_62569626_62584016_62584092_62585969_62586078_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
ENSMUST00000022517.9	chr14	-	1497	8	FSM	ENSMUSG00000021947.12	ENSMUST00000022517.9	1497	8	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_7	4.40778532015472	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACAATCTATTTCTACAC	NA	False	NA	37	True	AATAAA	-16	NA	57635986	57512449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_57513020_57513373_57513481_57523821_57523928_57541049_57541245_57550424_57550587_57600378_57600506_57620214_57620323_57635864
ENSMUST00000022518.8	chr14	-	836	5	FSM	ENSMUSG00000021951.8	ENSMUST00000022518.8	836	5	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_4	52.3115665986023	2226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTGTCATGAGGTTGAG	NA	False	NA	-9	True	AATAAA	-19	NA	57809026	57787054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_57787337_57787818_57788100_57795490_57795574_57803378_57803542_57808999
ENSMUST00000022522.15	chr14	-	1881	9	FSM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	0	0	0	0	multi-exon	FALSE	canonical	3	2964	junction_2	186.921733286956	25210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	-16	True	ATTAAA	-18	NA	63746541	63729795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
ENSMUST00000022528.6	chr14	+	1295	7	FSM	ENSMUSG00000021958.6	ENSMUST00000022528.6	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	11.9443152447793	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGAGCCTTTCACATGA	4087	False	NA	NA	False	AATAAA	-39	NA	64097812	64157304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_64097897_64101664_64101775_64103551_64103645_64105967_64106047_64109750_64109844_64115560_64115638_64156545
ENSMUST00000022536.3	chr14	-	2260	9	FSM	ENSMUSG00000021965.4	ENSMUST00000022536.3	2260	9	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_3	28.547110186497	457	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTTATGTTGCCAACTC	NA	False	NA	-7	True	AATAAA	-19	NA	58063620	58044017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_58044989_58045431_58045536_58047399_58047601_58049036_58049123_58054101_58054209_58057610_58058020_58059492_58059659_58060357_58060420_58063466
ENSMUST00000022553.6	chr14	+	3037	11	FSM	ENSMUSG00000021981.11	ENSMUST00000022553.6	3037	11	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_1	43.2892596379287	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTGGTCTCATTCCTCT	NA	False	NA	5	True	AATAAA	-12	NA	59678429	59786352	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59784434
ENSMUST00000022587.10	chr14	+	1762	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	0	0	0	0	multi-exon	FALSE	canonical	3	2255	junction_1	40	1357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGTGTTTCTATATGACGC	6539	False	NA	31	True	AATAAA	-21	NA	76741917	76745205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_76742282_76742688_76742738_76743856
ENSMUST00000022590.5	chr14	-	674	5	FSM	ENSMUSG00000022013.5	ENSMUST00000022590.5	674	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	265.32856989024	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTCCTTCAGAAGAATG	NA	False	NA	-139	True	NA	NA	NA	78112565	78063786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_78063911_78077607_78077679_78081835_78081913_78090337_78090412_78112237
ENSMUST00000022595.8	chr14	-	918	5	FSM	ENSMUSG00000022018.8	ENSMUST00000022595.8	918	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	11.7046999107196	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTACTTTGAAAGCTGCC	NA	False	NA	-11	True	AATAAA	-14	NA	79539085	79526195	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_79526560_79527683_79527747_79529110_79529219_79538154_79538341_79538888
ENSMUST00000022600.4	chr14	+	1799	11	FSM	ENSMUSG00000022022.4	ENSMUST00000022600.4	1799	11	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_10	10.5683489722851	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGATGTGCCTACAGAGT	NA	False	NA	1	True	AATAAA	-12	NA	79635211	79661027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_79635477_79637131_79637240_79638861_79639288_79640264_79640357_79644016_79644099_79644285_79644394_79649081_79649255_79650426_79650545_79653317_79653455_79656627_79656727_79660836
ENSMUST00000022609.7	chr14	-	2851	15	FSM	ENSMUSG00000022031.7	ENSMUST00000022609.7	2851	15	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_14	46.0192949772602	939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCGTCGTGTGGTGCTTT	3444	False	NA	NA	False	AATAAA	-16	NA	65830524	65767897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830373
ENSMUST00000022612.10	chr14	+	1720	8	FSM	ENSMUSG00000022033.10	ENSMUST00000022612.10	1720	8	0	0	0	0	multi-exon	FALSE	canonical	3	729	junction_5	59.6342594316319	3720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGCATTATCTGTTTTT	NA	False	NA	25	True	AATAAA	-41	NA	66043285	66055271	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_66043584_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
ENSMUST00000022613.10	chr14	-	2913	11	FSM	ENSMUSG00000022034.11	ENSMUST00000022613.10	2913	11	0	0	0	0	multi-exon	FALSE	canonical	3	933	junction_8	61.5078043828586	678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTGTTCAGTGGCTTG	6344	False	NA	-11	True	ATTAAA	-14	NA	66071443	66056486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
ENSMUST00000022614.7	chr14	+	2230	9	FSM	ENSMUSG00000022035.7	ENSMUST00000022614.7	2230	9	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_2	11.4229757506527	1293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCATTGATATCTGAATTC	NA	False	NA	31	True	AATAAA	-20	NA	66074750	66104056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_66074934_66077896_66077945_66083744_66083785_66089065_66089118_66091550_66091627_66093872_66093977_66094142_66094346_66097618_66097665_66102578
ENSMUST00000022650.9	chr14	+	2797	18	FSM	ENSMUSG00000022064.11	ENSMUST00000022650.9	2797	18	0	0	0	0	multi-exon	FALSE	canonical	2	66	junction_8	18.7005171736119	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGACTGTAGAGTTTTTA	NA	False	NA	15	True	AATAAA	-17	NA	99337342	99491929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671_99370806_99373888_99373998_99374477_99374660_99377972_99378099_99388078_99388178_99416750_99416917_99423916_99424068_99425153_99425245_99433784_99433888_99448375_99448507_99458994_99459080_99480274_99480446_99491596
ENSMUST00000022656.8	chr14	+	2726	12	FSM	ENSMUSG00000022070.8	ENSMUST00000022656.8	2726	12	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_1	51.3357124417381	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTTTTCCTTGTTCTGT	NA	False	NA	5	True	AATAAA	-16	NA	99283812	99311976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291000_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
ENSMUST00000022697.7	chr14	-	1689	5	FSM	ENSMUSG00000022101.7	ENSMUST00000022697.7	1689	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	15.3195136998535	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGTCCGCTGAAGAAAGG	NA	False	NA	0	True	AATAAA	-16	NA	70879708	70873642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_70874464_70875906_70876014_70876241_70876420_70878971_70879009_70879162
ENSMUST00000022704.9	chr14	-	1796	6	FSM	ENSMUSG00000022108.9	ENSMUST00000022704.9	1796	6	0	0	0	0	multi-exon	FALSE	canonical	3	633	junction_1	88.6128658830082	2348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTGGATGCTGTTTC	NA	False	NA	NA	False	AATAAA	-26	NA	73622729	73599665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_73600584_73601981_73602133_73603191_73603303_73603760_73603968_73605738_73605868_73622449
ENSMUST00000022705.7	chr14	+	1328	7	FSM	ENSMUSG00000022109.7	ENSMUST00000022705.7	1328	7	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_6	14.7356333046425	1774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTTTTTTCAATTTTT	NA	False	NA	15	True	AATAAA	-17	NA	73747464	73755985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333
ENSMUST00000022721.8	chr14	+	2445	4	FSM	ENSMUSG00000022125.8	ENSMUST00000022721.8	2445	4	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	4.96655480858378	894	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTGCATCTTGTATCTT	NA	False	NA	6	True	NA	NA	NA	103307651	103315064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_103307904_103309069_103309236_103310622_103310849_103313263
ENSMUST00000022727.10	chr14	-	1682	12	FSM	ENSMUSG00000022130.11	ENSMUST00000022727.10	1682	12	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_8	15.4084875183551	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTAATGTCTTTTTATTT	250	False	NA	-4	True	ATTAAA	-20	NA	118370159	118349887	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_118350570_118351724_118351823_118352528_118352588_118353490_118353657_118354381_118354426_118355148_118355209_118357051_118357151_118359130_118359274_118364906_118364998_118365634_118365704_118368018_118368086_118370055
ENSMUST00000022728.4	chr14	+	1875	9	FSM	ENSMUSG00000022131.4	ENSMUST00000022728.4	1875	9	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_5	22.6463987203264	258	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATTAGCATTTGTTTATT	NA	False	NA	5	True	AATAAA	-24	NA	118374569	118400673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_118374753_118377148_118377308_118385496_118385698_118390980_118391162_118391288_118391339_118395308_118395467_118397404_118397597_118398968_118399047_118400000
ENSMUST00000022751.15	chr15	+	1832	5	FSM	ENSMUSG00000022151.17	ENSMUST00000022751.15	1832	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	41.1430431543414	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTCCTTTTATTCTT	NA	False	NA	31	True	AGTAAA	-31	NA	5215040	5247817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_5215250_5219062_5219285_5237849_5237932_5241479_5241612_5246630
ENSMUST00000022765.14	chr14	-	2906	8	FSM	ENSMUSG00000022159.17	ENSMUST00000022765.14	2906	8	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_5	9.75202752335772	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTGTCATTTCTGAC	NA	False	NA	1	True	ATTAAA	-27	NA	52517002	52499215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098_52506192_52506374_52506458_52512899_52512968_52516370_52516443_52516652
ENSMUST00000022767.16	chr14	-	2025	11	FSM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	19.5910693939866	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGCTTTCCACTTAGTG	NA	False	NA	-16	True	AATAAA	-39	NA	52542585	52532297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52532551_52533530_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542344
ENSMUST00000022781.8	chr14	+	878	3	Antisense	novelGene_ENSMUSG00000022174.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17973	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGACGCCCTCTGTTGCTC	3596	False	NA	NA	False	NA	NA	NA	54472935	54491561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr14_+_54473171_54480155_54480326_54491088
ENSMUST00000022784.9	chr14	-	1587	10	FSM	ENSMUSG00000022177.10	ENSMUST00000022784.9	1587	10	0	0	0	0	multi-exon	FALSE	canonical	3	401	junction_5	37.1423687391577	846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTAGTCATTTTTCCT	NA	False	NA	-1	True	AATAAA	-20	NA	54791818	54779241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_54779715_54779839_54779909_54781235_54781367_54781661_54781808_54783182_54783280_54786322_54786458_54787125_54787258_54787350_54787494_54789593_54789668_54791631
ENSMUST00000022803.6	chr14	-	899	3	FSM	ENSMUSG00000022193.8	ENSMUST00000022803.6	899	3	0	0	0	0	multi-exon	FALSE	canonical	3	1854	junction_2	4.5	49960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGTCCACAGTTATT	8624	False	NA	-17	True	AATAAA	-18	NA	54855479	54851575	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_54851939_54853971_54854279_54855250
ENSMUST00000022815.10	chr14	+	1200	11	FSM	ENSMUSG00000022204.10	ENSMUST00000022815.10	1200	11	0	0	0	0	multi-exon	FALSE	canonical	3	1001	junction_1	176.552230232303	7619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55252910	55261594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
ENSMUST00000022816.15	chr15	-	3372	5	FSM	ENSMUSG00000022205.16	ENSMUST00000022816.15	3372	5	0	0	0	0	multi-exon	FALSE	canonical	3	7728	junction_1	236.548620794965	101669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCTTTGTGTTATCCCA	809	False	NA	NA	False	AATAAA	-11	NA	11996144	11981424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874_11993948_11996036
ENSMUST00000022821.8	chr14	+	1392	8	FSM	ENSMUSG00000022210.8	ENSMUST00000022821.8	1392	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	11.5987332172483	786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGCGTGTTTATTTCTC	NA	False	NA	11	True	AATAAA	-26	NA	55716214	55727797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724621_55724716_55724769_55725040_55725176_55725616_55725673_55727275
ENSMUST00000022826.7	chr14	+	971	2	FSM	ENSMUSG00000022215.7	ENSMUST00000022826.7	971	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCCTCCGATTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	55813073	55814411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55813405_55813771
ENSMUST00000022828.9	chr14	-	855	5	FSM	ENSMUSG00000022217.15	ENSMUST00000022828.9	855	5	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	3.69966214673719	928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTATGTATTTATTGTGT	NA	False	NA	-5	True	AATAAA	-17	NA	55822759	55818978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55819201_55819337_55819433_55819512_55819583_55822135_55822213_55822368
ENSMUST00000022830.14	chr14	-	1892	10	FSM	ENSMUSG00000022221.15	ENSMUST00000022830.14	1892	10	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_2	8.73194786861711	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTCTGAGGTGTCAATC	NA	False	NA	-1	True	AATAAA	-20	NA	56026322	56022451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_56022809_56023318_56023377_56023482_56023816_56024039_56024108_56024213_56024382_56024570_56024618_56024738_56024897_56025280_56025591_56025694_56025839_56026073
ENSMUST00000022842.16	chr15	-	1853	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	0	0	0	0	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	21026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGAGCTTGATAGAGGAT	NA	False	NA	-3	True	AATAAA	-30	NA	31601950	31590945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
ENSMUST00000022855.12	chr15	-	2664	10	FSM	ENSMUSG00000022247.13	ENSMUST00000022855.12	2664	10	0	0	0	0	multi-exon	FALSE	canonical	3	2074	junction_1	190.855449147086	12398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATAAGGCTTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	10486033	10474864	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
ENSMUST00000022856.15	chr15	+	1514	6	FSM	ENSMUSG00000022248.15	ENSMUST00000022856.15	1514	6	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_1	183.88039590995	1039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTACTGTCCTGTGTCTTT	4	True	NA	27	True	AATAAA	-32	NA	10486103	10493775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_10486351_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239
ENSMUST00000022867.5	chr15	+	1902	7	FSM	ENSMUSG00000022257.5	ENSMUST00000022867.5	1902	7	0	0	0	0	multi-exon	FALSE	canonical	3	358	junction_4	34.9698282650757	1522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCGTGGCTCCGCTGACT	31	True	NA	NA	False	ATTAAA	-22	NA	34238173	34284448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_34238569_34258826_34258939_34272489_34272564_34273373_34273497_34276281_34276381_34277577_34277674_34283445
ENSMUST00000022904.8	chr15	+	2071	13	FSM	ENSMUSG00000022295.9	ENSMUST00000022904.8	2071	13	0	0	0	0	multi-exon	FALSE	canonical	3	1269	junction_12	107.259679697866	3139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGCTAGTCATTTATTTT	184	False	NA	31	True	AATAAA	-17	NA	38662176	38692690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
ENSMUST00000022909.10	chr15	+	1551	11	FSM	ENSMUSG00000022300.11	ENSMUST00000022909.10	1551	11	0	0	0	0	multi-exon	FALSE	canonical	2	478	junction_2	96.4514903980234	3547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCAGTTGTGTGTTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	38976259	39010251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_38976447_38982105_38982306_38982739_38982848_38986607_38986698_38987723_38987880_38991284_38991363_38993610_38993694_39001478_39001644_39007017_39007154_39008485_39008650_39010067
ENSMUST00000022925.10	chr15	-	1295	8	FSM	ENSMUSG00000022312.12	ENSMUST00000022925.10	1295	8	0	0	0	0	multi-exon	FALSE	canonical	3	1820	junction_5	77.7200628104822	19291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGTGTATTTATGGTG	NA	False	NA	-12	True	AATAAA	-24	NA	51728919	51649953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
ENSMUST00000022945.9	chr8	-	2156	13	FSM	ENSMUSG00000022322.9	ENSMUST00000022945.9	2156	13	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_9	39.0672497112351	1475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTGAAATGTGGATT	NA	False	NA	-5	True	TATAAA	-15	NA	4829554	4785975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_4786408_4789124_4789267_4789594_4789682_4791847_4791967_4794446_4794579_4798704_4798826_4799291_4799461_4799551_4799786_4804219_4804313_4814880_4815090_4817906_4818023_4818143_4818312_4829420
ENSMUST00000022946.6	chr15	-	1004	6	FSM	ENSMUSG00000022323.12	ENSMUST00000022946.6	1004	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	17.7245592328836	1413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTTTTAATTTTGTTC	NA	False	NA	-10	True	AATAAA	-21	NA	34495401	34484166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_34484682_34485745_34485802_34486756_34486826_34487887_34487943_34488719_34488826_34495198
ENSMUST00000022952.6	chr15	+	1724	4	FSM	ENSMUSG00000022330.6	ENSMUST00000022952.6	1724	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	10.1434160364686	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTCTTGAGATTCATCT	117	False	NA	13	True	AATAAA	-16	NA	35296243	35303451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_35296614_35300334_35301102_35302057_35302158_35302964
ENSMUST00000022960.4	chr15	+	1506	13	Antisense	novelGene_ENSMUSG00000022336.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10734	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAAAACTTTATTGACAGC	NA	False	NA	NA	False	NA	NA	NA	43113453	43146115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr15_+_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
ENSMUST00000022962.8	chr15	+	1231	11	FSM	ENSMUSG00000022337.8	ENSMUST00000022962.8	1231	11	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_9	74.0384359640315	3713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATGAAAATTCTAGTTTC	NA	False	NA	10	True	AATAAA	-20	NA	43340624	43391159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_43340722_43355565_43355680_43358135_43358201_43358559_43358646_43360456_43360515_43371040_43371127_43371257_43371318_43374210_43374293_43375095_43375207_43377140_43377246_43390792
ENSMUST00000022977.14	chr15	+	2758	11	FSM	ENSMUSG00000022351.15	ENSMUST00000022977.14	2758	11	0	0	0	0	multi-exon	FALSE	canonical	3	657	junction_1	53.8835782033822	581	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTCTTTTGGTTTTTGTT	NA	False	NA	13	True	AATAAA	-18	NA	59186929	59203041	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59195577_59195655_59195828_59196310_59196407_59197883_59198027_59198418_59198516_59201588_59201677_59202573
ENSMUST00000022980.5	chr15	+	704	4	FSM	ENSMUSG00000022354.5	ENSMUST00000022980.5	704	4	0	0	0	0	multi-exon	FALSE	canonical	3	3308	junction_3	178.75557489364	19311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCTGTGCCTGAAGTGT	2816	False	NA	13	True	AATAAA	-14	NA	58805604	58811337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_58805788_58808116_58808310_58809200_58809315_58811123
ENSMUST00000022992.13	chr15	+	3311	21	FSM	ENSMUSG00000022364.15	ENSMUST00000022992.13	3311	21	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	36.9403234961471	1035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCTGAACTGTCTTC	NA	False	NA	8	True	AATAAA	-15	NA	57775594	57833457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
ENSMUST00000022993.7	chr15	-	3175	8	FSM	ENSMUSG00000022365.7	ENSMUST00000022993.7	3175	8	0	0	0	0	multi-exon	TRUE	canonical	3	365	junction_5	42.5977866628236	877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAAGATGGTATGTGAG	NA	False	NA	NA	False	NA	NA	NA	57755844	57732897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_57735303_57738892_57739004_57740813_57740867_57741880_57741977_57742444_57742472_57743395_57743461_57746830_57746943_57755538
ENSMUST00000022998.14	chr15	+	3144	22	FSM	ENSMUSG00000022369.14	ENSMUST00000022998.14	3144	22	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_14	23.9707872097639	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGGATTGCATGTCCT	NA	False	NA	NA	False	AATAAA	-17	NA	55420803	55489819	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_55421134_55421896_55421978_55426098_55426173_55426332_55426485_55428008_55428068_55429589_55429735_55430573_55430692_55432441_55432556_55434690_55434786_55436291_55436365_55440843_55440962_55449706_55449881_55452051_55452160_55460737_55460900_55466579_55466698_55470039_55470196_55474333_55474430_55480877_55481145_55483033_55483272_55484018_55484133_55488786_55488853_55489533
ENSMUST00000023019.12	chr15	+	1526	11	FSM	ENSMUSG00000022386.13	ENSMUST00000023019.12	1526	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_4	10.36532681588	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCATGTGTCTGGGGCTTG	NA	False	NA	NA	False	AATAAA	-14	NA	85763520	85781593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_85763660_85766874_85767041_85769286_85769394_85774405_85774529_85776767_85776941_85778026_85778081_85778154_85778222_85779126_85779228_85780560_85780706_85781035_85781119_85781225
ENSMUST00000023036.7	chr15	+	1675	5	FSM	ENSMUSG00000022400.10	ENSMUST00000023036.7	1675	5	0	0	0	0	multi-exon	FALSE	canonical	3	4160	junction_1	231.400491572512	57299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGTGTCATTTTCACC	NA	False	NA	17	True	NA	NA	NA	81350496	81360570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_81350652_81352355_81352435_81355152_81355224_81358043_81358130_81359286
ENSMUST00000023039.15	chr15	-	1089	12	FSM	ENSMUSG00000022403.16	ENSMUST00000023039.15	1089	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	740.766712477045	7455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCAAAGCCCTTGCTGAAT	NA	False	NA	NA	False	AGTAAA	-31	NA	81283795	81249650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273898_81276465_81276524_81283685
ENSMUST00000023040.9	chr15	-	1724	9	FSM	ENSMUSG00000022404.9	ENSMUST00000023040.9	1724	9	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_6	19.7638400873919	1620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAAGTTGCTCTTGATT	6848	False	NA	-10	True	AATAAA	-27	NA	81245013	81203111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136_81222289_81224174_81224242_81228301_81228363_81244877
ENSMUST00000023055.8	chr15	-	1472	4	FSM	ENSMUSG00000022420.17	ENSMUST00000023055.8	1472	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	38.6091526281874	833	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	243	False	NA	NA	False	ATTAAA	-17	NA	79658668	79645653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_79646727_79647710_79647795_79649016_79649223_79658559
ENSMUST00000023059.13	chr15	-	1324	9	FSM	ENSMUSG00000022422.14	ENSMUST00000023059.13	1324	9	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_7	27.4268914571083	1859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATCCCTGACTTCTTT	NA	False	NA	-5	True	AATAAA	-17	NA	54953887	54939494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
ENSMUST00000023062.5	chr15	+	1569	4	FSM	ENSMUSG00000022427.5	ENSMUST00000023062.5	1569	4	0	0	0	0	multi-exon	FALSE	canonical	3	903	junction_3	55.9305124437656	2665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTTGTTTTTATTGGTG	8178	False	NA	NA	False	AATAGA	-12	NA	79555061	79557601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_79555210_79555373_79555493_79556097_79556216_79556417
ENSMUST00000023064.9	chr15	+	1147	5	FSM	ENSMUSG00000022428.9	ENSMUST00000023064.9	1147	5	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_3	15.1224171348366	1593	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTGTGTAGCAAAAATAG	9559	False	NA	NA	False	ATTAAA	-14	NA	79543399	79551861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_79543495_79545571_79545726_79549846_79549953_79550031_79550151_79551188
ENSMUST00000023065.8	chr15	-	2219	14	FSM	ENSMUSG00000022429.12	ENSMUST00000023065.8	2219	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	20.9451241307391	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTGATTCTGCATTCA	NA	False	NA	NA	False	AGTAAA	-16	NA	79489309	79445697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79469869_79469962_79472951_79473025_79475805_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
ENSMUST00000023069.9	chr15	+	2518	9	FSM	ENSMUSG00000022434.9	ENSMUST00000023069.9	2518	9	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	15.0742951742362	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGCTCAGTTTTTC	NA	False	NA	8	True	AATAAA	-15	NA	84921289	84947031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_84921446_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84945732
ENSMUST00000023085.7	chr15	-	590	3	FSM	ENSMUSG00000022450.7	ENSMUST00000023085.7	590	3	0	0	0	0	multi-exon	FALSE	canonical	3	3916	junction_1	175	33041	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTCTCTCTTACTT	6212	False	NA	-13	True	GATAAA	-21	NA	82238523	82234340	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_82234573_82235179_82235296_82238281
ENSMUST00000023086.15	chr15	+	705	3	FSM	ENSMUSG00000022452.17	ENSMUST00000023086.15	705	3	0	0	0	0	multi-exon	FALSE	canonical	3	1353	junction_2	125	20193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGCTTGGTTGCACTTT	NA	False	NA	61	True	AATAAA	-43	NA	82230154	82233291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_82230471_82232100_82232242_82233043
ENSMUST00000023087.13	chr15	-	3025	9	FSM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_8	20.6333316505115	891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGTGTATGTTGGCTT	NA	False	NA	-12	True	AATAAA	-12	NA	94487760	94475831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
ENSMUST00000023088.8	chr15	-	1913	10	FSM	ENSMUSG00000022453.9	ENSMUST00000023088.8	1913	10	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_2	15.084944665313	706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGGTACTATGACCTG	1344	False	NA	0	True	AATAAA	-31	NA	82223027	82213732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
ENSMUST00000023089.5	chr15	+	1413	6	FSM	ENSMUSG00000022455.5	ENSMUST00000023089.5	1413	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	3.32264954516723	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGCCTCCTGCCTTATT	2000	False	NA	NA	False	TTTAAA	-23	NA	82183154	82198824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_82183270_82189871_82189981_82190244_82190387_82190546_82190640_82192723_82192829_82197975
ENSMUST00000023101.10	chr15	-	3932	16	FSM	ENSMUSG00000022464.15	ENSMUST00000023101.10	3932	16	0	0	0	0	multi-exon	FALSE	canonical	3	1416	junction_8	94.9644143877063	1776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGCTATGATCTTCTTT	NA	False	NA	-12	True	AATAAA	-16	NA	96953837	96892703	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
ENSMUST00000023104.7	chr15	-	2271	17	FSM	ENSMUSG00000022466.7	ENSMUST00000023104.7	2271	17	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_16	35.978292066189	713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGGTCGATATTTCATTT	NA	False	NA	-3	True	AATAAA	-25	NA	97603706	97572977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_97573261_97576266_97576368_97576950_97577049_97578215_97578403_97579499_97579721_97581707_97581807_97581913_97581985_97584322_97584445_97585991_97586120_97589062_97589192_97591094_97591166_97591984_97592107_97594378_97594507_97596796_97596920_97598948_97599093_97601082_97601251_97603630
ENSMUST00000023112.12	chr15	-	1300	8	FSM	ENSMUSG00000022474.16	ENSMUST00000023112.12	1300	8	0	0	0	0	multi-exon	FALSE	canonical	3	940	junction_3	83.919543587405	5062	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845131	81835308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
ENSMUST00000023129.15	chr15	-	819	9	FSM	ENSMUSG00000022487.15	ENSMUST00000023129.15	819	9	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_8	17.7019596372831	999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGCCAAATATTTATATAT	8362	False	NA	54	True	TTTAAA	-29	NA	103338897	103310831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338782
ENSMUST00000023133.8	chr15	-	1306	7	FSM	ENSMUSG00000022490.8	ENSMUST00000023133.8	1306	7	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_5	12.4688500761787	499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCTTTCACCCCCTTTTC	2052	False	NA	NA	False	ATTAAA	-21	NA	103446430	103438705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_103439377_103439780_103439888_103440752_103440909_103441464_103441529_103441883_103441922_103442776_103442838_103446221
ENSMUST00000023143.14	chr16	-	2235	4	FSM	ENSMUSG00000022500.16	ENSMUST00000023143.14	2235	4	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_3	22.4548930574657	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTCCCCATTCATTCT	NA	False	NA	-11	True	AATAAA	-13	NA	10810985	10777138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_10778916_10781120_10781278_10784288_10784514_10810909
ENSMUST00000023146.5	chr16	+	2121	11	FSM	ENSMUSG00000022503.11	ENSMUST00000023146.5	2121	11	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_1	76.2262422004391	2687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTTTGTCATTCTTTC	NA	False	NA	NA	False	AAGAAA	-25	NA	10229811	10242292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119_10238211_10238837_10238993_10239090_10239202_10239440_10239544_10240685_10240770_10241104
ENSMUST00000023157.6	chr16	-	2398	17	FSM	ENSMUSG00000022515.7	ENSMUST00000023157.6	2398	17	0	0	0	0	multi-exon	TRUE	canonical	3	59	junction_1	12.8608842522589	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGGGGGCTCATTTGT	8223	False	NA	-5	True	AATAAA	-13	NA	4782037	4759299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
ENSMUST00000023179.7	chr15	+	2772	5	FSM	ENSMUSG00000033669.9	ENSMUST00000023179.7	2772	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	13.4976849866931	258	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTAGCCTGTACTTTGAA	NA	False	NA	NA	False	AATAAA	-19	NA	76763458	76776595	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76763554_76764938_76764983_76765311_76765439_76772430_76772548_76774206
ENSMUST00000023189.15	chr16	-	3280	16	FSM	ENSMUSG00000022536.15	ENSMUST00000023189.15	3280	16	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_6	221.604291976086	1953	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAACTGTATCATTGTA	8110	False	NA	-8	True	AATAAA	-13	NA	4867727	4831772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839295_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
ENSMUST00000023191.17	chr16	-	1431	11	FSM	ENSMUSG00000022540.17	ENSMUST00000023191.17	1431	11	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	153.714052708267	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831391	4826593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829623_4830104_4830160_4830290_4830374_4831166_4831239_4831326
ENSMUST00000023207.15	chr16	-	979	5	FSM	ENSMUSG00000022548.15	ENSMUST00000023207.15	979	5	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	27.2614654778499	1017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTTGCTAGCCCAATAAT	8710	False	NA	-38	True	NA	NA	NA	31133412	31115973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216
ENSMUST00000023210.8	chr15	+	1520	7	FSM	ENSMUSG00000022551.9	ENSMUST00000023210.8	1520	7	0	0	0	0	multi-exon	FALSE	canonical	3	4240	junction_5	258.32822575596	17154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCCATGGTGTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	76227722	76230460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76227893_76228501_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
ENSMUST00000023211.16	chr15	-	1734	9	FSM	ENSMUSG00000022552.17	ENSMUST00000023211.16	1734	9	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	14.1862609591111	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTTCTGTTCTTGGA	8113	False	NA	-3	True	ATTAAA	-16	NA	76235311	76231239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76231386_76231458_76231588_76231681_76231795_76231863_76232018_76232095_76232205_76232285_76232428_76232500_76232636_76234254_76234430_76234680
ENSMUST00000023212.15	chr15	-	1686	8	Antisense	novelGene_ENSMUSG00000022553.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCTCTGAATGGTCCACT	9585	False	NA	NA	False	NA	NA	NA	76238573	76235505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr15_-_76235860_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
ENSMUST00000023213.8	chr15	+	1993	6	FSM	ENSMUSG00000022554.8	ENSMUST00000023213.8	1993	6	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	14.4858551697855	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGACTCTCCTGCAAGAG	3544	False	NA	NA	False	NA	NA	NA	76253097	76255637	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76253770_76253851_76253953_76254055_76254155_76254361_76254454_76254531_76254655_76254731
ENSMUST00000023217.11	chr15	-	2491	16	FSM	ENSMUSG00000022557.12	ENSMUST00000023217.11	2491	16	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_11	43.9047453775405	1002	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGGCTGGCAGCAGAGT	NA	False	NA	-34	True	AATAAA	-20	NA	76361477	76337188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76337579_76337662_76337771_76337843_76337929_76338016_76338306_76338377_76338559_76338651_76338785_76338873_76338944_76339017_76339099_76339169_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
ENSMUST00000023219.9	chr15	-	1710	9	FSM	ENSMUSG00000022559.9	ENSMUST00000023219.9	1710	9	0	0	0	0	multi-exon	TRUE	canonical	3	128	junction_8	22.8988946239769	360	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTATTTATTATATGT	NA	False	NA	NA	False	AATAAA	-21	NA	76422935	76419920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116_76422276_76422524
ENSMUST00000023221.13	chr15	+	2107	12	FSM	ENSMUSG00000022561.14	ENSMUST00000023221.13	2107	12	0	0	0	0	multi-exon	TRUE	non_canonical	3	197	junction_6	31.5777932223483	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGGCCCGCTGTCTTCT	4713	False	NA	24	True	AATAAA	-27	NA	76215430	76219107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76215664_76216095_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217300_76217376_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
ENSMUST00000023225.8	chr15	+	1725	7	FSM	ENSMUSG00000022564.8	ENSMUST00000023225.8	1725	7	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	10.0567832276971	295	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTGCTTCTCCTTGTCT	NA	False	NA	13	True	AATAAA	-14	NA	76130974	76134104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76131101_76132050_76132378_76132458_76132569_76132648_76132850_76132971_76133101_76133177_76133322_76133416
ENSMUST00000023231.7	chr15	-	1335	11	FSM	ENSMUSG00000022570.8	ENSMUST00000023231.7	1335	11	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_10	87.2147349935778	1302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGACTCAGAAGCTGGG	8919	False	NA	-29	True	AATAAA	-15	NA	75801602	75796531	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
ENSMUST00000023235.13	chr15	-	824	7	FSM	ENSMUSG00000055762.17	ENSMUST00000023235.13	824	7	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_6	1073.10918984665	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTGTGGTGGAGGATGA	NA	False	NA	NA	False	NA	NA	NA	75781178	75767652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773102_75781093
ENSMUST00000023237.8	chr15	-	1898	13	FSM	ENSMUSG00000022574.8	ENSMUST00000023237.8	1898	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_8	7.1351049201972	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGTGTCGTTAGTTCAC	NA	False	NA	NA	False	CATAAA	-30	NA	75766330	75762804	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75762910_75762997_75763106_75763195_75763351_75763428_75763532_75763632_75763714_75763811_75763897_75764190_75764332_75764405_75764603_75764953_75765070_75765154_75765286_75765401_75765485_75765568_75765697_75765865
ENSMUST00000023247.13	chr15	+	877	4	FSM	ENSMUSG00000022583.13	ENSMUST00000023247.13	877	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.89897948556636	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCAAGATCTCAGTTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	75140269	75144083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_75140330_75140550_75140649_75141628_75141746_75143481
ENSMUST00000023248.13	chr15	-	819	3	FSM	ENSMUSG00000075602.11	ENSMUST00000023248.13	819	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	8	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAGTTCTCCATTTTTC	9905	False	NA	-4	True	AATAAA	-15	NA	74869483	74866726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_74867329_74868300_74868418_74869383
ENSMUST00000023260.5	chr15	-	513	3	FSM	ENSMUSG00000022595.8	ENSMUST00000023260.5	513	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	1.5	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGAGTCTCGTTTCTGG	NA	False	NA	NA	False	AATACA	-19	NA	74606178	74604095	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_74604389_74604815_74604936_74606078
ENSMUST00000023265.5	chr15	+	860	3	FSM	ENSMUSG00000022598.7	ENSMUST00000023265.5	860	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAACCTGTGTCCTTAAG	NA	False	NA	NA	False	AATAAA	-19	NA	74586687	74588918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_74586756_74587869_74587978_74588234
ENSMUST00000023269.5	chr16	+	677	6	FSM	ENSMUSG00000098274.8	ENSMUST00000023269.5	677	6	0	0	0	0	multi-exon	FALSE	canonical	3	9815	junction_1	1495.09793659145	99533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786637	55791798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_55786802_55786909_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
ENSMUST00000023283.6	chr15	-	2906	14	FSM	ENSMUSG00000022614.9	ENSMUST00000023283.6	2906	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	66.7675469479281	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCTGCGGTGTGGCGAG	NA	False	NA	NA	False	AATAAA	-19	NA	89239862	89235206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766_89239021_89239558
ENSMUST00000023289.13	chr15	-	1707	11	FSM	ENSMUSG00000022617.16	ENSMUST00000023289.13	1707	11	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_8	79.2225346729073	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1180	False	NA	NA	False	AATAAA	-23	NA	89314102	89310569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312748_89312916_89313031_89313251_89313361_89313579
ENSMUST00000023330.8	chr16	+	3045	27	FSM	ENSMUSG00000022652.8	ENSMUST00000023330.8	3045	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	334.347850609362	2212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAGAAAACATTTCCTT	NA	False	NA	11	True	AATAAA	-16	NA	48251599	48451263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
ENSMUST00000023348.11	chr16	-	836	6	FSM	ENSMUSG00000022668.11	ENSMUST00000023348.11	836	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	38.0473389345431	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTAAGGGTTACAAATAAT	NA	False	NA	-72	True	NA	NA	NA	44566722	44559504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565757_44565857_44566562
ENSMUST00000023351.11	chr16	-	1035	3	FSM	ENSMUSG00000022671.14	ENSMUST00000023351.11	1035	3	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_1	21	8542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTGGAGTCCTGGTTT	NA	False	NA	-2	True	ATTAAA	-22	NA	15681211	15666304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_15666594_15680261_15680408_15680611
ENSMUST00000023353.4	chr16	-	3589	16	FSM	ENSMUSG00000022673.6	ENSMUST00000023353.4	3589	16	0	0	0	0	multi-exon	TRUE	canonical	3	1276	junction_6	130.715909088714	1061	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGAAGTAGGCATTAATG	NA	False	NA	NA	False	AATAAA	-20	NA	15455264	15441760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
ENSMUST00000023357.14	chr16	-	1465	5	FSM	ENSMUSG00000022677.16	ENSMUST00000023357.14	1465	5	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_3	56.7384349449295	2039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135239	14117107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_14118074_14122317_14122452_14128910_14128996_14131679_14131878_14135157
ENSMUST00000023359.13	chr16	+	2287	9	FSM	ENSMUSG00000022678.17	ENSMUST00000023359.13	2287	9	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_8	30.8696857774743	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTGTGCATTGTATAT	NA	False	NA	96	True	AATAAA	-18	NA	13981138	14010792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009581
ENSMUST00000023362.15	chr16	+	1175	10	FSM	ENSMUSG00000022681.16	ENSMUST00000023362.15	1175	10	0	0	0	0	multi-exon	FALSE	canonical	3	538	junction_1	69.8729004852541	2976	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTAGATGACTTTTTAC	NA	False	NA	NA	False	AATAAA	-23	NA	13637114	13653315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ENSMUST00000023365.13	chr16	+	3003	8	FSM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_1	10.7760126660835	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTATAGAGAAATCTGAT	NA	False	NA	NA	False	AATAAA	-24	NA	13489721	13521476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736_13516940_13519928
ENSMUST00000023387.14	chr16	-	2838	8	FSM	ENSMUSG00000022704.17	ENSMUST00000023387.14	2838	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	53.7818723727463	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCTGTGCATTGTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	43710048	43681769	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43698319_43698397_43700661_43700718_43701355_43701577_43709929
ENSMUST00000023407.12	chr16	+	2159	10	FSM	ENSMUSG00000022724.16	ENSMUST00000023407.12	2159	10	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_9	29.2042614850793	875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGGCCGGTATATACATG	NA	False	NA	-44	True	NA	NA	NA	59292137	59312824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_59292309_59295872_59296333_59299532_59299653_59300653_59300783_59303367_59303472_59306895_59306999_59307790_59307963_59309707_59309797_59311567_59311658_59312103
ENSMUST00000023426.12	chr16	+	2147	5	FSM	ENSMUSG00000022744.13	ENSMUST00000023426.12	2147	5	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	33.101170674162	813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTGAGATCACAACATG	NA	False	NA	24	True	AATAAA	-31	NA	58548272	58554614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_58548448_58549800_58550111_58551664_58551776_58552943_58553082_58553201
ENSMUST00000023431.8	chr16	-	3690	18	FSM	ENSMUSG00000022749.9	ENSMUST00000023431.8	3690	18	0	0	0	0	multi-exon	TRUE	canonical	3	134	junction_12	18.4520326427881	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCCCTGGAGGATGTC	NA	False	NA	-4	True	AATAAA	-22	NA	57051867	56989224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_56990804_56991985_56992181_56993386_56993523_56998294_56998384_57003213_57003354_57004742_57004850_57007000_57007044_57009624_57009796_57011836_57011930_57012971_57013095_57018643_57018748_57019086_57019134_57019221_57019347_57028566_57028691_57032733_57032939_57034526_57034633_57038671_57038784_57051676
ENSMUST00000023432.10	chr16	-	1286	10	FSM	ENSMUSG00000022751.10	ENSMUST00000023432.10	1286	10	0	0	0	0	multi-exon	TRUE	canonical	3	674	junction_8	39.9499687108764	4074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGATGTTTTTCTTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	56987695	56977027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_56977530_56977846_56977903_56979780_56979880_56980429_56980509_56981492_56981568_56982053_56982148_56983880_56983970_56984560_56984682_56986460_56986580_56987643
ENSMUST00000023444.11	chr16	+	3394	21	FSM	ENSMUSG00000022761.13	ENSMUST00000023444.11	3394	21	0	0	0	0	multi-exon	FALSE	canonical	2	77	junction_5	14.8690113995518	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTCTCCGAGTCTTCT	NA	False	NA	32	True	NA	NA	NA	17326551	17344197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_17327083_17327489_17327553_17329929_17329987_17333671_17333752_17333837_17333947_17335319_17335404_17336380_17336439_17337250_17337391_17338299_17338502_17338754_17338911_17339308_17339420_17340020_17340114_17340244_17340341_17340421_17340588_17340831_17341002_17341140_17341298_17341959_17342087_17342171_17342322_17343102_17343209_17343286_17343368_17343540
ENSMUST00000023453.10	chr16	-	1108	3	FSM	ENSMUSG00000022769.10	ENSMUST00000023453.10	1108	3	0	0	0	0	multi-exon	FALSE	canonical	2	125	junction_1	37.5	313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGAGTGCATGAGATGTG	NA	False	NA	-10	True	AATAAA	-18	NA	16950247	16948001	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_16948653_16949460_16949658_16949987
ENSMUST00000023455.14	chr16	-	2333	21	FSM	ENSMUSG00000022771.18	ENSMUST00000023455.14	2333	21	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	124.441592725262	1326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCGTTCATGACCTGGTA	NA	False	NA	NA	False	AATAAA	-19	NA	16929121	16904418	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
ENSMUST00000023460.7	chr16	+	2070	4	FSM	ENSMUSG00000022774.14	ENSMUST00000023460.7	2070	4	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_1	12.2565175405668	3417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGTCTATTTCCTCGC	NA	False	NA	4	True	AATAAA	-15	NA	31767330	31777290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_31767546_31772942_31773125_31775108_31775248_31775756
ENSMUST00000023465.16	chr16	+	3073	18	FSM	ENSMUSG00000022779.17	ENSMUST00000023465.16	3073	18	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	94.325542449951	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGGACCTTTTACTG	NA	False	NA	NA	False	ATTAAA	-32	NA	16688644	16710854	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_16688920_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ENSMUST00000023474.4	chr16	+	1394	3	FSM	ENSMUSG00000022787.11	ENSMUST00000023474.4	1394	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	52	779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTAATTTTGGTTTTTTTT	NA	False	NA	18	True	AATAAA	-19	NA	32066070	32075901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32066344_32070640_32071137_32075276
ENSMUST00000023477.15	chr16	-	3951	18	FSM	ENSMUSG00000022789.16	ENSMUST00000023477.15	3951	18	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_4	261.707977990631	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTTTCTGATGTGCTTC	NA	False	NA	-7	True	AATAAA	-29	NA	16176823	16130093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
ENSMUST00000023486.15	chr16	+	4890	19	FSM	ENSMUSG00000022797.17	ENSMUST00000023486.15	4890	19	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_9	25.3592094942417	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCGGACTCATTTCATA	7957	False	NA	18	True	AATAAA	-19	NA	32427737	32451612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
ENSMUST00000023510.7	chr16	-	3484	6	FSM	ENSMUSG00000022814.7	ENSMUST00000023510.7	3484	6	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_1	75.962095811003	4562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGTCTCCTGCCTCT	8640	False	NA	NA	False	NA	NA	NA	33787408	33775151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33784141_33784296_33787195
ENSMUST00000023535.4	chr16	+	2257	15	FSM	ENSMUSG00000022837.15	ENSMUST00000023535.4	2257	15	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_14	52.2779073016196	793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGTTGTCATGTTATT	NA	False	NA	44	True	AATAAA	-11	NA	36648769	36693075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
ENSMUST00000023550.9	chr16	-	1809	17	FSM	ENSMUSG00000022844.9	ENSMUST00000023550.9	1809	17	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_7	56.9566378374812	913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGGTAGAGTATGTTT	NA	False	NA	-10	True	AATAAA	-14	NA	35311243	35217681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_35217909_35218646_35218782_35224382_35224454_35228003_35228135_35230663_35230825_35231296_35231368_35243235_35243373_35250102_35250175_35250262_35250355_35258482_35258551_35269772_35269834_35273820_35273914_35276465_35276512_35276831_35276916_35284704_35284793_35286900_35287028_35311098
ENSMUST00000023562.9	chr16	-	1360	5	FSM	ENSMUSG00000022856.10	ENSMUST00000023562.9	1360	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	14.1244468918255	869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGCAGGTTCTGAATGT	9190	False	NA	-2	True	ATTAAA	-16	NA	21766302	21753075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_21753796_21755730_21755870_21756682_21756845_21764750_21764905_21766117
ENSMUST00000023587.12	chr16	+	1544	8	FSM	ENSMUSG00000022871.14	ENSMUST00000023587.12	1544	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	202.97702694982	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTTGGCTTCAACCTG	NA	False	NA	9	True	AATAAA	-15	NA	22738986	22758502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22739246_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ENSMUST00000023598.15	chr16	-	1228	11	FSM	ENSMUSG00000022881.16	ENSMUST00000023598.15	1228	11	0	0	0	0	multi-exon	FALSE	canonical	2	1237	junction_10	165.436271718145	8366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATATACAATTTTATTTA	NA	False	NA	-26	True	AATAAA	-23	NA	22946487	22932692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
ENSMUST00000023608.14	chr16	-	809	5	FSM	ENSMUSG00000022890.14	ENSMUST00000023608.14	809	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	2792.56360715383	75821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84632513	84624758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_84624884_84625312_84625438_84628216_84628396_84631696_84631872_84632308
ENSMUST00000023615.7	chr16	-	2547	8	FSM	ENSMUSG00000022898.14	ENSMUST00000023615.7	2547	8	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_4	18.1490428150369	1036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGGACTGCATATTGT	NA	False	NA	-13	True	AATAAA	-23	NA	94327689	94298641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_94299942_94302393_94302547_94302940_94303092_94305160_94305236_94306222_94306304_94311596_94311747_94313088_94313233_94327196
ENSMUST00000023629.9	chr16	+	3303	15	FSM	ENSMUSG00000022912.9	ENSMUST00000023629.9	3303	15	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_5	24.011476847711	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGCAATTTCTTTATTT	NA	False	NA	NA	False	AATAAA	-22	NA	62674669	62749709	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_62674868_62705763_62705922_62709343_62709369_62719238_62719326_62720688_62720812_62720915_62721048_62723854_62723981_62728024_62728147_62730360_62730477_62734160_62734351_62738437_62738606_62739875_62740045_62744878_62745028_62746690_62746917_62748395
ENSMUST00000023630.16	chr16	-	1044	7	FSM	ENSMUSG00000022913.17	ENSMUST00000023630.16	1044	7	0	0	0	0	multi-exon	FALSE	canonical	3	1101	junction_3	73.0062782688357	9657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAACTTTATTTTCTTAA	NA	False	NA	-10	True	AATAAA	-16	NA	95792160	95781132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_95781312_95783301_95783439_95784992_95785192_95788492_95788556_95789159_95789312_95790691_95790799_95791953
ENSMUST00000023660.9	chr16	+	1531	4	FSM	ENSMUSG00000022941.9	ENSMUST00000023660.9	1531	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	1.63299316185545	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGACAATCATCTTTTT	NA	False	NA	7	True	AATAAA	-15	NA	94129278	94137794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_94129457_94130204_94130281_94134114_94134183_94136585
ENSMUST00000023666.11	chr16	+	1922	14	FSM	ENSMUSG00000022945.13	ENSMUST00000023666.11	1922	14	0	0	0	0	multi-exon	FALSE	canonical	3	827	junction_1	52.2487224157954	1182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGCTGACTTCGCT	4366	False	NA	21	True	AATAAA	-29	NA	93680788	93703003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_93680864_93681353_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
ENSMUST00000023669.14	chr16	-	1816	12	FSM	ENSMUSG00000022948.17	ENSMUST00000023669.14	1816	12	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_11	42.1206452981264	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93400691	93380344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024_93400099_93400453
ENSMUST00000023672.10	chr16	-	2190	4	FSM	ENSMUSG00000022951.17	ENSMUST00000023672.10	2190	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	123.764112551077	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACGTTGTTGGTCGTTTT	NA	False	NA	-5	True	AATAAA	-22	NA	92196965	92188842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92196783
ENSMUST00000023677.10	chr16	-	838	7	FSM	ENSMUSG00000022956.12	ENSMUST00000023677.10	838	7	0	0	0	0	multi-exon	FALSE	canonical	3	5653	junction_6	394.832348387684	4642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGAGGAGCCTTGTCCTTT	811	False	NA	-1	True	AATAAA	-20	NA	91728575	91722101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725898_91727241_91727293_91728407
ENSMUST00000023684.14	chr16	-	3518	22	FSM	ENSMUSG00000022962.16	ENSMUST00000023684.14	3518	22	0	0	0	0	multi-exon	FALSE	canonical	3	1247	junction_21	231.829967404665	1321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCTGAGGGCACTTAGAG	NA	False	NA	NA	False	NA	NA	NA	91443840	91418073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
ENSMUST00000023686.15	chr16	-	2347	7	FSM	ENSMUSG00000022964.15	ENSMUST00000023686.15	2347	7	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_3	6.43989302878722	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGAATCTGAGTCTTTT	NA	False	NA	-6	True	AATAAA	-24	NA	91394688	91371390	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91373047_91374861_91374920_91377089_91377183_91378582_91378651_91380163_91380277_91383829_91383970_91394469
ENSMUST00000023691.12	chr16	+	1850	7	FSM	ENSMUSG00000022969.14	ENSMUST00000023691.12	1850	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	1.63299316185545	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGGTTTGTTCTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	91203122	91222722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_91203261_91204505_91204630_91208770_91208929_91211500_91211668_91216219_91216368_91218620_91218779_91221765
ENSMUST00000023707.11	chr16	+	641	5	FSM	ENSMUSG00000022982.11	ENSMUST00000023707.11	641	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	320.427351360648	4427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACTGTGTGACTCCTTTG	NA	False	NA	19	True	ATTAAA	-18	NA	90017641	90023217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_90017818_90019667_90019765_90021243_90021314_90022032_90022151_90023037
ENSMUST00000023736.10	chr15	-	2304	17	FSM	ENSMUSG00000022999.16	ENSMUST00000023736.10	2304	17	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_9	10.4395581803063	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTGTCCCTGTGTCTAT	NA	False	NA	-3	True	AATAAA	-35	NA	98816112	98801797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98802390_98802545_98802708_98803796_98803864_98804124_98804216_98805417_98805492_98805774_98805853_98806400_98806478_98806556_98806641_98806729_98806803_98807083_98807149_98807268_98807338_98809376_98809504_98810024_98810129_98810278_98810419_98811437_98811472_98813017_98813103_98815730
ENSMUST00000023749.15	chr15	+	2452	10	FSM	ENSMUSG00000023010.16	ENSMUST00000023749.15	2452	10	0	0	0	0	multi-exon	FALSE	canonical	3	1506	junction_9	135.383406171756	2582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGTCTCAGTGTTAAAT	NA	False	NA	15	True	AATAAA	-20	NA	99290762	99307930	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ENSMUST00000023756.12	chr15	-	2933	17	FSM	ENSMUSG00000023015.15	ENSMUST00000023756.12	2933	17	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_16	66.1194172974173	872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGATGTTGGTTTTCTTGT	NA	False	NA	-1	True	AATAAA	-19	NA	99549537	99518377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99549387
ENSMUST00000023762.13	chr15	-	2096	10	FSM	ENSMUSG00000023021.16	ENSMUST00000023762.13	2096	10	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_2	16.8332416572494	1111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTCTTTAGTA	NA	False	NA	-3	True	ATTAAA	-15	NA	99670482	99633472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_99634318_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
ENSMUST00000023769.11	chr15	+	2365	7	FSM	ENSMUSG00000023027.14	ENSMUST00000023769.11	2365	7	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_1	32.1334024895521	779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTTTTCGGAATGCAAA	NA	False	NA	13	True	ATTAAA	-16	NA	100125699	100159125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695
ENSMUST00000023779.8	chr15	+	2477	7	FSM	ENSMUSG00000023034.8	ENSMUST00000023779.8	2477	7	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	46.5895195653844	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTTTTTTTCTGTTT	NA	False	NA	19	True	AATAAA	-21	NA	101164726	101172676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_101164853_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
ENSMUST00000023803.8	chr15	+	1437	7	FSM	ENSMUSG00000023043.8	ENSMUST00000023803.8	1437	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	6.13731754650732	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGTCTTCCTTGGCAG	NA	False	NA	12	True	AATAAA	-24	NA	101936614	101940462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_101937110_101937900_101937984_101938257_101938415_101939053_101939219_101939329_101939456_101939730_101939955_101940275
ENSMUST00000023806.14	chr15	+	2208	15	FSM	ENSMUSG00000023045.14	ENSMUST00000023806.14	2208	15	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_10	3.76408917893011	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATCTTGTCTCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	102058960	102071904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102059148_102059540_102059597_102061582_102061720_102062395_102062456_102062695_102062804_102065246_102065524_102066046_102066117_102066507_102066593_102066988_102067035_102067148_102067279_102069024_102069123_102069486_102069586_102070443_102070580_102070988_102071135_102071331
ENSMUST00000023810.12	chr15	+	1224	5	FSM	ENSMUSG00000023048.14	ENSMUST00000023810.12	1224	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	259.364969685576	3529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTAGTTTTGTTACTC	2378	False	NA	40	True	AATAAA	-43	NA	102367609	102371241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102367691_102367898_102368017_102368542_102368582_102368804_102369155_102370605
ENSMUST00000023813.9	chr15	+	1523	9	FSM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_3	28.7706447616316	1426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102426893	102432111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUST00000023826.5	chr14	-	852	5	FSM	ENSMUSG00000023064.5	ENSMUST00000023826.5	852	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	6.72681202353685	728	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTGCTTCTTCTTTGTGC	5954	False	NA	NA	False	AATAAA	-19	NA	34096746	34092230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_34092523_34092813_34092874_34095212_34095341_34095627_34095670_34096416
ENSMUST00000023829.8	chr17	+	1913	3	FSM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	0	0	0	0	multi-exon	FALSE	canonical	3	1159	junction_2	73.5	8903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATGTCTTGTCATTAGA	4647	False	NA	24	True	NA	NA	NA	29312742	29319696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29312836_29317370_29317812_29318317
ENSMUST00000023836.4	chrX	-	1763	6	FSM	ENSMUSG00000023074.12	ENSMUST00000023836.4	1763	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	37.7804182083788	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGCCCCCT	NA	False	NA	NA	False	AATAAA	-7	NA	52459379	52433897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_52434867_52436580_52436743_52444529_52444751_52446286_52446363_52446450_52446705_52459298
ENSMUST00000023854.10	chrX	+	2356	7	FSM	ENSMUSG00000023092.17	ENSMUST00000023854.10	2356	7	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_5	4.78423336480244	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTCCTGTCTTTTTATTC	NA	False	NA	12	True	AATAAA	-18	NA	55777146	55838706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55834679_55835236_55835407_55835823_55836011_55837203
ENSMUST00000023856.9	chr2	+	1196	5	FSM	ENSMUSG00000023094.15	ENSMUST00000023856.9	1196	5	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	15.0996688705415	885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTGTCTCAGTCTGT	4784	False	NA	19	True	AATAAA	-20	NA	19376446	19399787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_19376591_19382972_19383074_19388051_19388129_19398018_19398167_19399061
ENSMUST00000023869.15	chr5	+	2339	8	FSM	ENSMUSG00000023106.16	ENSMUST00000023869.15	2339	8	0	0	0	0	multi-exon	FALSE	canonical	3	1477	junction_4	100.760982082372	8242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTCGCTAACTGAATTTG	8978	False	NA	NA	False	AATGAA	-2	NA	124045237	124066898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124045430_124046162_124046278_124053253_124053274_124055262_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
ENSMUST00000023911.11	chr16	-	2143	10	FSM	ENSMUSG00000023143.11	ENSMUST00000023911.11	2143	10	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	7.98764478027175	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCACCAGGGGGCGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	5021876	5013152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_5013923_5015418_5015483_5015575_5015678_5016439_5016488_5016594_5016801_5017479_5017609_5017806_5017916_5019237_5019378_5021204_5021664_5021760
ENSMUST00000023913.11	chr16	+	2495	5	FSM	ENSMUSG00000023147.18	ENSMUST00000023913.11	2495	5	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_2	29.2350389088163	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGAAAGCGTGCTTC	NA	False	NA	30	True	AATAAA	-24	NA	95946606	95959052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_95946779_95953012_95953179_95954170_95954239_95955280_95955396_95957078
ENSMUST00000023918.13	chr1	+	3511	15	FSM	ENSMUSG00000023150.15	ENSMUST00000023918.13	3511	15	0	0	0	0	multi-exon	TRUE	canonical	3	1145	junction_2	98.7764172879585	2178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACTGTGGGATTTAATGT	NA	False	NA	17	True	ATTAAA	-21	NA	151220227	151240173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
ENSMUST00000023924.4	chr14	-	2401	6	FSM	ENSMUSG00000023156.5	ENSMUST00000023924.4	2401	6	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_4	6.88767014308903	1920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTGTGTATATACCTT	NA	False	NA	-15	True	NA	NA	NA	14389406	14377938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_14379866_14380975_14381055_14382232_14382310_14385771_14385857_14385978_14386066_14389260
ENSMUST00000023952.10	chr15	-	1958	9	FSM	ENSMUSG00000049382.11	ENSMUST00000023952.10	1958	9	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_8	4.93552175559991	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATGCATTCGTGTAGGT	5892	False	NA	6	True	AATAAA	-32	NA	101912917	101905132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_101905569_101906094_101906154_101906287_101906509_101906825_101906952_101907208_101907374_101907865_101907962_101909014_101909076_101909851_101910061_101912332
ENSMUST00000023994.10	chr2	-	1768	8	FSM	ENSMUSG00000023224.13	ENSMUST00000023994.10	1768	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_7	34.9080424626107	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCAGACATTTTCTTCT	NA	False	NA	-26	True	AATAAA	-1	NA	84605748	84595730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84596172_84597618_84597839_84600117_84600255_84600436_84600641_84601768_84601904_84603474_84603989_84605083_84605159_84605706
ENSMUST00000024004.9	chr8	+	1058	6	FSM	ENSMUSG00000023235.15	ENSMUST00000024004.9	1058	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	5.67097875150313	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGTCTAGTGTGCAGTA	7913	False	NA	NA	False	AATAAA	-35	NA	4399587	4410020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_4399656_4399771_4399895_4403882_4404001_4404090_4404204_4407592_4407690_4409481
ENSMUST00000024011.10	chr14	-	3392	5	FSM	ENSMUSG00000023243.10	ENSMUST00000024011.10	3392	5	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_3	12.5573683548744	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTGTGGTATGTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	20231877	20190124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_20192526_20194702_20194872_20195023_20195191_20196568_20196681_20231334
ENSMUST00000024031.13	chr9	-	1529	15	FSM	ENSMUSG00000023262.14	ENSMUST00000024031.13	1529	15	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_14	78.143510052117	1763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGGACAGTCATGGAA	NA	False	NA	-7	True	AATAAA	-27	NA	106315518	106310179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314937_106315331
ENSMUST00000024042.5	chr15	+	1366	10	FSM	ENSMUSG00000023272.5	ENSMUST00000024042.5	1366	10	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_1	99.7619388566824	2439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGACGTGTTGGTTTGTTT	NA	False	NA	17	True	AATAAA	-26	NA	88703848	88710886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_88704038_88704133_88704217_88704731_88704843_88705337_88705430_88706161_88706339_88707269_88707366_88707944_88708029_88708850_88708947_88709352_88709494_88710589
ENSMUST00000024047.12	chr9	+	1596	9	FSM	ENSMUSG00000023277.14	ENSMUST00000024047.12	1596	9	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_8	33.0111250186963	1296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGAGCCTGGGTGCCTTT	NA	False	NA	19	True	AATAAA	-16	NA	106080306	106092588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106080484_106084087_106084166_106088917_106089097_106089454_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
ENSMUST00000024171.14	chr6	+	3237	24	FSM	ENSMUSG00000023403.15	ENSMUST00000024171.14	3237	24	0	0	0	0	multi-exon	FALSE	canonical	2	108	junction_8	52.5929548855327	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	173	False	NA	NA	False	AATAAA	-22	NA	49372537	49446435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
ENSMUST00000024260.14	chr9	+	2035	13	FSM	ENSMUSG00000023495.14	ENSMUST00000024260.14	2035	13	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_11	32.902212016148	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGCAGTAATACTAGTG	1600	False	NA	27	True	AATAAA	-20	NA	106331040	106341211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106331207_106337203_106337349_106337474_106337499_106337595_106337629_106337849_106337967_106338191_106338324_106338463_106338593_106339047_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706_106339877_106340329
ENSMUST00000024338.5	chr4	+	1315	8	FSM	ENSMUSG00000023571.5	ENSMUST00000024338.5	1315	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	2.37332110369088	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGGTGCACTCTGCTTAT	NA	False	NA	10	True	AATAAA	-24	NA	156046774	156051086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_156047195_156048999_156049117_156049224_156049346_156049436_156049589_156050050_156050160_156050322_156050414_156050538_156050618_156050860
ENSMUST00000024470.13	chr5	+	1596	7	FSM	ENSMUSG00000023707.14	ENSMUST00000024470.13	1596	7	0	0	0	0	multi-exon	TRUE	canonical	3	59	junction_5	17.423642940939	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTTTGCTATTATTTAA	NA	False	NA	12	True	TATAAA	-17	NA	124250359	124253546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127_124252256_124252450_124252709_124252777
ENSMUST00000024486.14	chr11	+	1332	5	FSM	ENSMUSG00000023723.18	ENSMUST00000024486.14	1332	5	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_1	23.6999472573253	3117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTCTCTATTTGTGGG	NA	False	NA	19	True	AATAAA	-19	NA	88095213	88102333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_88095312_88096014_88096186_88100678_88100757_88100929_88101057_88101475
ENSMUST00000024518.11	chr15	-	1261	8	FSM	ENSMUSG00000023755.11	ENSMUST00000024518.11	1261	8	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_2	21.3388598283861	1091	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	-22	True	AATAAA	-20	NA	98779361	98775658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
ENSMUST00000024570.6	chr17	-	2033	16	FSM	ENSMUSG00000015659.13	ENSMUST00000024570.6	2033	16	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_12	20.0614611188274	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCTCCATCTGTTGTTA	2607	False	NA	-19	True	AATATA	-15	NA	6130002	6094340	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6111822_6111937_6115223_6115353_6116945_6117068_6117803_6117936_6121027_6121165_6122108_6122146_6124430_6124523_6129893
ENSMUST00000024594.9	chr17	+	1915	9	FSM	ENSMUSG00000023827.9	ENSMUST00000024594.9	1915	9	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_3	26.473748790075	767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGCAAGTGTTTACACAA	NA	False	NA	28	True	ATTAAA	-19	NA	12338170	12438532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_12338303_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
ENSMUST00000024636.15	chr17	+	3077	12	FSM	ENSMUSG00000069135.12	ENSMUST00000024636.15	3077	12	0	0	0	0	multi-exon	TRUE	canonical	3	299	junction_6	38.250587420542	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTACAGTGTTGGTTTT	NA	False	NA	30	True	ATTAAA	-22	NA	8384371	8415307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8401059_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
ENSMUST00000024657.12	chr17	-	1663	12	FSM	ENSMUSG00000023883.14	ENSMUST00000024657.12	1663	12	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_1	72.874056420468	1129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGATGACCTTAAACATCA	NA	False	NA	-19	True	AATAAA	-16	NA	15181535	15165270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_15165447_15166460_15166650_15166916_15167026_15170821_15170978_15172881_15173036_15174276_15174387_15175053_15175204_15175294_15175429_15176245_15176330_15176995_15177127_15179680_15179788_15181372
ENSMUST00000024697.5	chr17	+	946	3	FSM	ENSMUSG00000023904.11	ENSMUST00000024697.5	946	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	200.5	5580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892581	23894201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_23893043_23893508_23893650_23893857
ENSMUST00000024698.10	chr17	-	984	4	FSM	ENSMUSG00000023905.16	ENSMUST00000024698.10	984	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	6.34209919681348	908	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGGCCTGATCCCTAAC	NA	False	NA	-1	True	AATAAA	-18	NA	23896442	23894418	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_23895021_23895112_23895248_23895492_23895598_23896300
ENSMUST00000024699.4	chr17	+	1622	3	FSM	ENSMUSG00000023906.4	ENSMUST00000024699.4	1622	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTGATGTCTCTTGGT	NA	False	NA	9	True	AATAAA	-23	NA	23898222	23901420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_23898382_23898731_23898796_23900021
ENSMUST00000024704.10	chr17	-	694	3	FSM	ENSMUSG00000023911.13	ENSMUST00000024704.10	694	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0.5	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTAGTTTTTGTTGTTGT	NA	False	NA	0	True	AATAAA	-26	NA	24005055	23995889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_23996074_23998601_23999031_24004974
ENSMUST00000024727.10	chr17	-	3027	16	FSM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	0	0	0	0	multi-exon	FALSE	canonical	3	561	junction_9	75.0022221893014	1136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTAGCCTTTTGTTTGAA	2184	False	NA	-2	True	AATAAA	-20	NA	45744663	45702809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
ENSMUST00000024731.9	chr17	-	1160	8	FSM	ENSMUSG00000023935.11	ENSMUST00000024731.9	1160	8	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_7	6.20730313782869	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTAGCCTCTCCCATGGTA	NA	False	NA	NA	False	TATAAA	-21	NA	45785864	45759862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45760118_45760360_45760477_45763603_45763667_45765016_45765138_45768083_45768246_45772087_45772237_45775352_45775507_45785724
ENSMUST00000024734.8	chr17	+	645	3	FSM	ENSMUSG00000023939.8	ENSMUST00000024734.8	645	3	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_1	143	12736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGAGCTGTGATCG	NA	False	NA	37	True	AATAAA	-26	NA	45997247	46009421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_45997354_46006407_46006499_46008973
ENSMUST00000024736.14	chr17	-	3628	9	FSM	ENSMUSG00000023940.15	ENSMUST00000024736.14	3628	9	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_7	54.3666660279992	1627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTTGCCGCTTACTTTT	NA	False	NA	0	True	AATAAA	-30	NA	53996361	53981813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_53983740_53983934_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53995017_53995149_53996238
ENSMUST00000024739.14	chr17	-	2520	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	0	0	0	0	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	82030	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTGCTCTCCTTGTAAC	NA	False	NA	-24	True	AATAAA	-19	NA	45884197	45878700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
ENSMUST00000024762.3	chr17	-	966	5	FSM	ENSMUSG00000023966.9	ENSMUST00000024762.3	966	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.22474487139159	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTGTCTTGATTGTTGT	NA	False	NA	NA	False	CATAAA	-21	NA	46455142	46440196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46440425_46445898_46446046_46447667_46447798_46452472_46452639_46454847
ENSMUST00000024763.10	chr17	+	884	6	FSM	ENSMUSG00000023967.10	ENSMUST00000024763.10	884	6	0	0	0	0	multi-exon	FALSE	canonical	3	1040	junction_5	46.4732180938656	9063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGGTCAGTGCTTAGAA	NA	False	NA	19	True	AATAAA	-19	NA	46421911	46439836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_46422056_46428865_46428898_46433649_46433758_46436215_46436340_46436568_46436639_46439430
ENSMUST00000024766.7	chr17	-	1195	7	FSM	ENSMUSG00000023971.10	ENSMUST00000024766.7	1195	7	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_2	28.055995596109	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGGGG	NA	False	NA	NA	False	NA	NA	NA	46985181	46978383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
ENSMUST00000024774.14	chr17	+	1668	4	FSM	ENSMUSG00000023979.15	ENSMUST00000024774.14	1668	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	4.64279609239471	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTGTCCTGGAGGTGAA	1130	False	NA	NA	False	ATTAAA	-15	NA	47696317	47703892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_47696622_47700034_47700185_47701905_47702027_47702799
ENSMUST00000024778.3	chr17	+	2054	4	FSM	ENSMUSG00000092558.4	ENSMUST00000024778.3	2054	4	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_2	32.2937902527543	1263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGCTGTAGTTGCCTTCTT	NA	False	NA	NA	False	CATAAA	-16	NA	47922506	47935343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_47922618_47923887_47924043_47929733_47929988_47933809
ENSMUST00000024782.12	chr17	+	1388	9	FSM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	162.479181358721	3878	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCTGTTGAGTCATTT	NA	False	NA	16	True	AATAAA	-16	NA	48037766	48045407	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_48037890_48039666_48039827_48040176_48040295_48041018_48041138_48041523_48041724_48043309_48043430_48043885_48044037_48044681_48044781_48045109
ENSMUST00000024794.12	chr17	-	956	5	FSM	ENSMUSG00000023995.13	ENSMUST00000024794.12	956	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	2.06155281280883	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCCTGGTGTAAGGTGGA	NA	False	NA	-1	True	AATAAA	-19	NA	48758550	48755462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_48755829_48756047_48756190_48756910_48757099_48757899_48758090_48758480
ENSMUST00000024802.10	chr17	-	1462	4	FSM	ENSMUSG00000024007.16	ENSMUST00000024802.10	1462	4	0	0	0	0	multi-exon	FALSE	canonical	3	1356	junction_1	125.889722464633	6523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCGGCCTTTTCTCTTTT	9689	False	NA	1	True	NA	NA	NA	29483160	29469776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_29470700_29471223_29471293_29480710_29480866_29482845
ENSMUST00000024832.9	chr17	-	1191	9	FSM	ENSMUSG00000024033.11	ENSMUST00000024832.9	1191	9	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_8	7.5	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCTCTGATGTCGCTTC	NA	False	NA	-1	True	AATAAA	-26	NA	31496357	31473992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_31474194_31477071_31477201_31477761_31477922_31480728_31480801_31484787_31484924_31485316_31485408_31492290_31492397_31492498_31492613_31496175
ENSMUST00000024851.10	chr17	-	2201	17	FSM	ENSMUSG00000024056.11	ENSMUST00000024851.10	2201	17	0	0	0	0	multi-exon	TRUE	canonical	3	248	junction_10	48.8427003246135	883	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCCCCTCCCATTTCTG	NA	False	NA	-11	True	AATAAA	-19	NA	71833852	71803094	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_71803349_71806261_71806365_71807266_71807398_71808503_71808597_71811760_71811851_71814254_71814408_71815562_71815769_71818339_71818485_71819387_71819495_71821183_71821278_71824538_71824629_71825732_71825836_71827754_71827928_71828022_71828147_71830576_71830655_71832627_71832738_71833705
ENSMUST00000024870.9	chr17	+	2148	14	FSM	ENSMUSG00000024069.15	ENSMUST00000024870.9	2148	14	0	0	0	0	multi-exon	TRUE	canonical	3	152	junction_5	21.3572043468894	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCATTTACAATCGTAGTA	NA	False	NA	NA	False	AATAAA	-23	NA	74702602	74731216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_74702664_74708906_74708994_74710998_74711084_74712679_74712723_74714215_74714282_74715840_74715922_74716347_74716384_74717328_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
ENSMUST00000024885.10	chr17	-	4070	16	FSM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_13	57.736720454914	1964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTAGTGTCTATTAGCAT	NA	False	NA	-3	True	ATTAAA	-40	NA	79244495	79226434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
ENSMUST00000024887.6	chr17	+	1749	10	FSM	ENSMUSG00000024082.6	ENSMUST00000024887.6	1749	10	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_6	40.441391826191	2202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATTGTCTCCTTATCAA	NA	False	NA	NA	False	AGTAAA	-12	NA	79244564	79254928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724_79253899_79254303
ENSMUST00000024905.11	chr17	-	3811	10	FSM	ENSMUSG00000024096.18	ENSMUST00000024905.11	3811	10	0	0	0	0	multi-exon	FALSE	canonical	1	202	junction_3	142.261973611371	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCTTCTATTGTCCACT	NA	False	NA	NA	False	AATAAA	-31	NA	66191949	66155412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66191672
ENSMUST00000024909.15	chr17	-	927	9	FSM	ENSMUSG00000024099.16	ENSMUST00000024909.15	927	9	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_8	1803.30633403618	27892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAAGCTTTATTCGGTTT	5516	False	NA	-11	True	AATAAA	-15	NA	66408490	66386435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66407972_66408070_66408409
ENSMUST00000024930.8	chr17	-	2166	10	FSM	ENSMUSG00000024118.15	ENSMUST00000024930.8	2166	10	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_7	23.2426810463471	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCGGGCAGTGGTGGTGC	3337	False	NA	NA	False	NA	NA	NA	24439764	24434027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439108_24439225_24439285_24439490_24439590_24439664
ENSMUST00000024932.12	chr17	+	1183	3	Antisense	novelGene_ENSMUSG00000024121.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23770	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGATCTGTCCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	24382839	24388435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr17_+_24383583_24383672_24383857_24388179
ENSMUST00000024940.11	chr17	+	833	3	FSM	ENSMUSG00000024128.14	ENSMUST00000024940.11	833	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGAGTGGTCCTCACCA	9254	False	NA	NA	False	AATAAA	-18	NA	24161348	24164581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24161475_24161585_24161692_24163980
ENSMUST00000024946.7	chr17	+	1086	7	FSM	ENSMUSG00000024132.7	ENSMUST00000024946.7	1086	7	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	202.517008887868	4608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTTAGCTCTTGTGTTC	4882	False	NA	11	True	TATAAA	-24	NA	24645656	24658294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24645717_24645826_24645914_24652115_24652235_24655151_24655299_24656193_24656316_24656405_24656585_24657922
ENSMUST00000024957.7	chr17	-	988	6	FSM	ENSMUSG00000024145.7	ENSMUST00000024957.7	988	6	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_5	28.3760462362183	3345	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGGCTTCAGATGCTGTT	NA	False	NA	-12	True	AATAAA	-15	NA	87332834	87304683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_87304996_87316230_87316340_87327828_87327946_87329286_87329379_87331092_87331342_87332725
ENSMUST00000024959.10	chr17	+	1184	5	FSM	ENSMUSG00000024146.10	ENSMUST00000024959.10	1184	5	0	0	0	0	multi-exon	FALSE	canonical	3	592	junction_4	35.4427355039083	5820	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTGTGTCTTCAATGAT	NA	False	NA	4	True	AATAAA	-14	NA	87332977	87343238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_87333104_87335126_87335193_87338435_87338491_87341683_87341788_87342405
ENSMUST00000024967.14	chr17	+	3283	16	FSM	ENSMUSG00000024151.14	ENSMUST00000024967.14	3283	16	0	0	0	0	multi-exon	FALSE	canonical	3	1624	junction_8	132.693531618287	3111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4661	False	NA	19	True	AATAAA	-16	NA	87979757	88031141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
ENSMUST00000024974.16	chr17	+	1101	9	FSM	ENSMUSG00000024158.18	ENSMUST00000024974.16	1101	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	126.378152779664	817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTTATGGACTCTTT	NA	False	NA	11	True	AAAAAG	-24	NA	25069640	25083424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25069730_25071704_25071881_25072605_25072671_25075611_25075730_25076489_25076599_25079919_25080024_25080286_25080389_25082650_25082731_25083166
ENSMUST00000024978.7	chr17	+	715	5	FSM	ENSMUSG00000073435.11	ENSMUST00000024978.7	715	5	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_1	9.82344135219425	2370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGACAAAAGTAGTGTTAAG	NA	False	NA	36	True	AATAAA	-35	NA	25115473	25116496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25115534_25115601_25115733_25115825_25115928_25116001_25116115_25116187
ENSMUST00000024981.9	chr17	-	2672	5	FSM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	0	0	0	0	multi-exon	TRUE	canonical	3	1697	junction_3	70.6872513258225	881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTGCCAATATTTTTCT	4773	False	NA	-1	True	ATTAAA	-17	NA	25179663	25161443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
ENSMUST00000025007.7	chr17	-	1006	5	FSM	ENSMUSG00000024177.10	ENSMUST00000025007.7	1006	5	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	23.847169643377	3221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACTTACTAGTTCTG	NA	False	NA	0	True	ATTAAA	-22	NA	26314576	26310707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26311127_26312590_26312704_26312832_26312935_26313110_26313245_26314338
ENSMUST00000025014.10	chr17	+	1068	5	FSM	ENSMUSG00000024181.10	ENSMUST00000025014.10	1068	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	613.108677152754	7159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342473	26345587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344451_26344539_26345244
ENSMUST00000025023.15	chr17	+	1700	9	FSM	ENSMUSG00000024188.17	ENSMUST00000025023.15	1700	9	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_1	74.6521098161331	1000	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATATGTTTACATTAGTG	NA	False	NA	13	True	ATTAAA	-25	NA	26471869	26499693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
ENSMUST00000025027.10	chr17	-	741	7	FSM	ENSMUSG00000024194.17	ENSMUST00000025027.10	741	7	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_6	250.570959122472	9020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9252	False	NA	-17	True	AATAAA	-18	NA	27158543	27156945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158290_27158343_27158424
ENSMUST00000025040.6	chr6	-	390	1	FSM	ENSMUSG00000091845.2	ENSMUST00000025040.6	390	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	107055	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTGTATTTTTTCTTT	NA	False	NA	-7	True	AATAAA	-27	NA	108117470	108117080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_108117100_108117500
ENSMUST00000025045.15	chr17	-	500	4	FSM	ENSMUSG00000024208.17	ENSMUST00000025045.15	500	4	0	0	0	0	multi-exon	TRUE	canonical	3	2713	junction_1	153.559977424675	25158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTGGAACTCATTCAT	1947	False	NA	2	True	AATAAA	-24	NA	27352890	27341636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27341815_27344120_27344191_27344857_27344933_27352713
ENSMUST00000025052.14	chr17	-	522	5	FSM	ENSMUSG00000052146.17	ENSMUST00000025052.14	522	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2686.58356467838	7721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCACTTGTGTATGTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	27854214	27849395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27849481_27851252_27851331_27853045_27853218_27853299_27853450_27854177
ENSMUST00000025057.5	chr17	-	1220	5	FSM	ENSMUSG00000024218.14	ENSMUST00000025057.5	1220	5	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_3	9.9373034571759	1440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACAGGGTTTCTCTGTGT	NA	False	NA	-9	True	AATAAA	-19	NA	28126698	28120101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474
ENSMUST00000025077.7	chr18	+	2651	9	FSM	ENSMUSG00000024234.8	ENSMUST00000025077.7	2651	9	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_2	18.3711730708738	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTGATAACAGTATTTCTA	-12	True	NA	17	True	AATAAA	-18	NA	4375591	4397330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ENSMUST00000025093.6	chr17	-	1833	10	FSM	ENSMUSG00000024246.10	ENSMUST00000025093.6	1833	10	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	16.3940669785982	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTTGCTTATAGACTC	8164	False	NA	NA	False	ATTAAA	-22	NA	81372496	81333760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_81334400_81340060_81340170_81344926_81345042_81345533_81345606_81351528_81351617_81357365_81357419_81360323_81360402_81361552_81361963_81363203_81363340_81372363
ENSMUST00000025095.9	chr17	-	1076	3	FSM	ENSMUSG00000024248.15	ENSMUST00000025095.9	1076	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	644	33138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTTGTTTTTTGTTTT	9947	False	NA	-23	True	AATAAA	-23	NA	83821759	83809346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_83810167_83811528_83811658_83821632
ENSMUST00000025101.10	chr17	+	1354	13	FSM	ENSMUSG00000024253.10	ENSMUST00000025101.10	1354	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_6	7.6412622575651	954	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATCTAAGTATAAATTTT	NA	False	NA	16	True	AATAAA	-24	NA	84933923	84963016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_84934005_84935712_84935831_84939063_84939099_84940946_84941017_84943659_84943749_84950299_84950487_84951532_84951602_84952146_84952225_84954672_84954750_84955073_84955145_84956643_84956742_84957136_84957230_84962728
ENSMUST00000025106.5	chr18	+	1015	4	FSM	ENSMUSG00000024258.5	ENSMUST00000025106.5	1015	4	0	0	0	0	multi-exon	FALSE	canonical	3	694	junction_1	16.2138486760204	4814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAATTGTATTTATTT	NA	False	NA	21	True	AATAAA	-20	NA	31922211	31929754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_31922298_31924892_31925074_31928340_31928437_31929102
ENSMUST00000025120.8	chr18	+	2497	19	FSM	ENSMUSG00000024271.9	ENSMUST00000025120.8	2497	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	210.761530739142	1178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTGTCTGATTTTGCCT	NA	False	NA	90	True	TTTAAA	-10	NA	24737019	24771867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
ENSMUST00000025163.14	chr17	-	807	4	FSM	ENSMUSG00000024309.16	ENSMUST00000025163.14	807	4	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_1	64.8194072447099	13644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGATTCTGTTTTGCTTTC	NA	False	NA	83	True	NA	NA	NA	34159317	34157794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997
ENSMUST00000025170.11	chr17	+	2229	15	FSM	ENSMUSG00000024312.11	ENSMUST00000025170.11	2229	15	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_8	25.4498305996527	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCTGGACCATCCTGTA	1979	False	NA	13	True	ATTAAA	-16	NA	34159633	34168671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34159781_34159858_34160066_34160165_34160247_34160379_34160493_34160606_34160695_34160795_34160858_34162319_34162425_34162531_34162683_34162774_34162911_34163455_34163556_34167193_34167508_34167616_34167712_34167809_34167906_34168046_34168161_34168251
ENSMUST00000025181.18	chr17	-	1619	8	FSM	ENSMUSG00000061232.17	ENSMUST00000025181.18	1619	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	28.3196045170126	664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATGATAGATGAATAAA	NA	False	NA	-40	True	NA	NA	NA	34219321	34215026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
ENSMUST00000025186.16	chr17	-	2320	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_6	39.6512575112344	967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTTGTCTTTATGTG	NA	False	NA	-2	True	AATAAA	-26	NA	34250594	34247242	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
ENSMUST00000025204.7	chr18	-	1109	4	FSM	ENSMUSG00000024346.7	ENSMUST00000025204.7	1109	4	0	0	0	0	multi-exon	FALSE	canonical	3	3024	junction_2	66.9792671072342	10306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGTTGCCTTGCATTT	NA	False	NA	NA	False	NA	NA	NA	36587577	36536728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_36537514_36565358_36565444_36584132_36584300_36587505
ENSMUST00000025209.12	chr18	-	702	6	FSM	ENSMUSG00000024352.13	ENSMUST00000025209.12	702	6	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_2	20.7980768341691	1587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAATGCCCAACCTCTC	NA	False	NA	-7	True	AATAAA	-26	NA	35795239	35789741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_35789898_35790001_35790105_35793335_35793407_35793496_35793628_35793844_35793911_35795064
ENSMUST00000025211.6	chr18	-	904	4	FSM	ENSMUSG00000024353.6	ENSMUST00000025211.6	904	4	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_1	0.471404520791032	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGTGTTGGCTGTTGAA	NA	False	NA	-1	True	AATAAA	-16	NA	35782420	35780319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_35780780_35780876_35780988_35781311_35781437_35782212
ENSMUST00000025215.10	chr18	-	1703	10	FSM	ENSMUSG00000024357.11	ENSMUST00000025215.10	1703	10	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_3	10.8423039781937	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTGTCTCTTGTGTCTG	NA	False	NA	-2	True	ATTAAA	-18	NA	35631982	35399448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481814_35551109_35551249_35571319_35571434_35631843
ENSMUST00000025217.11	chr18	-	3049	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	0	0	0	0	multi-exon	TRUE	canonical	3	5978	junction_5	267.479905787332	11896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTCGTTGTAATCTTCT	199	False	NA	-19	True	CATAAA	-5	NA	35087410	35070466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
ENSMUST00000025218.8	chr18	-	3709	11	FSM	ENSMUSG00000024360.9	ENSMUST00000025218.8	3709	11	0	0	0	0	multi-exon	FALSE	canonical	3	901	junction_10	88.1591742248077	3934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGTGTGCTTGAGATT	NA	False	NA	NA	False	ATTAAA	-16	NA	35065060	35035837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886
ENSMUST00000025228.12	chr18	-	2084	17	FSM	ENSMUSG00000024370.18	ENSMUST00000025228.12	2084	17	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	259.182247655969	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATACTACTGTTCTTTCTA	NA	False	NA	NA	False	AATAAA	-14	NA	34784788	34764003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_34764355_34767135_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
ENSMUST00000025246.13	chr17	-	961	7	FSM	ENSMUSG00000024387.14	ENSMUST00000025246.13	961	7	0	0	0	0	multi-exon	FALSE	canonical	3	826	junction_1	47.9780042195264	11870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTCTCCTACTGTGT	NA	False	NA	-9	True	AATAAA	-15	NA	35340262	35335173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340097
ENSMUST00000025249.7	chr17	-	1013	6	FSM	ENSMUSG00000024391.8	ENSMUST00000025249.7	1013	6	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	5.65685424949238	318	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGGGTTTTGTCTGCA	NA	False	NA	NA	False	AATAAA	-20	NA	35351026	35347972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35348112_35349055_35349155_35349383_35349483_35349814_35349895_35350170_35350326_35350585
ENSMUST00000025250.14	chr17	+	3858	25	FSM	ENSMUSG00000024392.18	ENSMUST00000025250.14	3858	25	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_11	162.018431736091	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGAGTACCTTTTCTTTA	8488	False	NA	32	True	AATAAA	-33	NA	35354153	35366298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
ENSMUST00000025271.17	chr17	+	1362	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	0	0	0	0	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	45221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGAATTTTGTTTTCCT	3036	False	NA	0	True	AATAAA	-20	NA	35816914	35821669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
ENSMUST00000025276.15	chr18	+	2170	20	FSM	ENSMUSG00000024410.16	ENSMUST00000025276.15	2170	20	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_9	24.4724957266604	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAATGTTGCTAACTCCC	NA	False	NA	NA	False	AATAAA	-45	NA	12301773	12323054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
ENSMUST00000025278.8	chr11	+	756	4	FSM	ENSMUSG00000024414.14	ENSMUST00000025278.8	756	4	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_3	47.8632310744781	9137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGAAAGGGACAGGACAG	NA	False	NA	19	True	NA	NA	NA	94544592	94550915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_94544668_94547312_94547445_94547808_94547877_94550434
ENSMUST00000025290.7	chr18	+	3763	11	FSM	ENSMUSG00000024423.7	ENSMUST00000025290.7	3763	11	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_9	40.2394085443611	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	16	True	NA	NA	NA	13104979	13126007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
ENSMUST00000025305.16	chr17	-	1079	7	FSM	ENSMUSG00000024436.17	ENSMUST00000025305.16	1079	7	0	0	0	0	multi-exon	FALSE	canonical	3	1264	junction_4	57.4071714451542	10647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTCCCTTTGGGCTGT	4296	False	NA	-6	True	AATAAA	-21	NA	36227281	36221270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225383_36225482_36225587_36225697_36227183
ENSMUST00000025314.7	chr18	+	2394	13	FSM	ENSMUSG00000024442.7	ENSMUST00000025314.7	2394	13	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_6	27.9179104200551	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTTGCCCTTGAGTGTG	3967	False	NA	20	True	AATAAA	-21	NA	38383311	38395682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522_38387620_38390310_38390454_38391080_38391240_38391322_38391416_38392949_38393110_38394116_38394339_38394932
ENSMUST00000025363.7	chr18	-	2375	6	FSM	ENSMUSG00000024486.7	ENSMUST00000025363.7	2375	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	10.9068785635488	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTTTCATTTTTGGTT	NA	False	NA	-10	True	AATAAA	-22	NA	36648858	36637979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_36639418_36639687_36639779_36640501_36640658_36645609_36645788_36648139_36648314_36648520
ENSMUST00000025385.7	chr18	+	2684	24	FSM	ENSMUSG00000024507.7	ENSMUST00000025385.7	2684	24	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_3	18.279183363144	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGCTCCTCTTTGCAT	NA	False	NA	14	True	AATAAA	-23	NA	50261267	50329336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_50261477_50263192_50263247_50272514_50272623_50273406_50273467_50275536_50275559_50275659_50275707_50277807_50277893_50279456_50279645_50288193_50288286_50291451_50291477_50293201_50293331_50295168_50295270_50297681_50297919_50299950_50300003_50303786_50303859_50305094_50305199_50306730_50306797_50310238_50310309_50310973_50311081_50312113_50312201_50314998_50315086_50316225_50316365_50324778_50324907_50328921
ENSMUST00000025394.14	chr18	+	860	6	FSM	ENSMUSG00000024516.14	ENSMUST00000025394.14	860	6	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_3	14.5244621242922	2034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGAGTCTGCCCAGTCTC	NA	False	NA	NA	False	AATAAA	-40	NA	65933585	65950755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_65933783_65942515_65942626_65945735_65945886_65947908_65948029_65949891_65949950_65950530
ENSMUST00000025404.10	chr18	+	1115	5	FSM	ENSMUSG00000024526.10	ENSMUST00000025404.10	1115	5	0	0	0	0	multi-exon	FALSE	canonical	1	47	junction_1	40.4042077016738	1382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGCAACTGGTTTGT	6208	False	NA	28	True	AATAAA	-26	NA	67476673	67500855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_67476911_67491779_67491925_67493165_67493313_67499444_67499627_67500451
ENSMUST00000025418.4	chr18	+	1059	7	FSM	ENSMUSG00000024537.6	ENSMUST00000025418.4	1059	7	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	27.1871088733041	5140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGGTTTTATCTGGAAAG	NA	False	NA	26	True	AATAAA	-32	NA	67774668	67787232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_67774806_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786222_67786344_67786955
ENSMUST00000025419.9	chr18	-	1403	5	FSM	ENSMUSG00000024538.9	ENSMUST00000025419.9	1403	5	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_3	12.8354976529934	3384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTGCAAGACTTTG	NA	False	NA	-11	True	ATTAAA	-20	NA	53551187	53539403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_53540138_53542196_53542382_53544058_53544153_53544577_53544692_53550911
ENSMUST00000025420.14	chr18	-	1568	10	FSM	ENSMUSG00000024539.18	ENSMUST00000025420.14	1568	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	132.404915801473	1641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGTTGGTTTGTGTGTGT	NA	False	NA	-15	True	ATTAAA	-18	NA	67857658	67798581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_67798945_67805736_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
ENSMUST00000025421.9	chr18	+	3542	9	FSM	ENSMUSG00000079614.5	ENSMUST00000025421.9	3542	9	0	0	0	0	multi-exon	FALSE	canonical	3	1509	junction_8	173.331285043987	1933	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTTGTCTTATAAAAAAG	NA	False	NA	19	True	AATAAA	-21	NA	67907945	67928557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
ENSMUST00000025427.14	chr18	+	1852	10	FSM	ENSMUSG00000009535.14	ENSMUST00000025427.14	1852	10	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	337.084266125157	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGCAATTCTGAGACTC	NA	False	NA	87	True	AATAAA	-17	NA	68433470	68454977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68451064_68451183_68452188_68452291_68453296_68453331_68454388
ENSMUST00000025444.8	chr18	+	2620	15	FSM	ENSMUSG00000024560.8	ENSMUST00000025444.8	2620	15	0	0	0	0	multi-exon	TRUE	canonical	3	205	junction_6	27.3663729300567	984	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGCTCTCTCTCAATAGT	NA	False	NA	14	True	AATAAA	-17	NA	74349201	74354564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_74349554_74350237_74350357_74350459_74350561_74350831_74351068_74351156_74351349_74351699_74351727_74351802_74352049_74352201_74352310_74352453_74352639_74352908_74353117_74353191_74353303_74353427_74353478_74353579_74353677_74353898_74354052_74354129
ENSMUST00000025462.7	chr18	-	1377	6	FSM	ENSMUSG00000024570.8	ENSMUST00000025462.7	1377	6	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_3	30.0026665481587	573	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTTGTGTATACGCAC	NA	False	NA	-3	True	AATAAA	-20	NA	80243873	80235479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_80236098_80236446_80236515_80238233_80238319_80240464_80240578_80240878_80241099_80243600
ENSMUST00000025463.14	chr18	+	1650	4	FSM	ENSMUSG00000024571.16	ENSMUST00000025463.14	1650	4	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	503.796475661441	4068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAAAAGGAGTACACGTT	NA	False	NA	NA	False	AATAAA	-3	NA	80250081	80255938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_80250162_80250368_80250559_80253276_80253346_80254627
ENSMUST00000025474.14	chr18	+	3567	12	FSM	ENSMUSG00000024581.14	ENSMUST00000025474.14	3567	12	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_8	19.1691039293584	745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTCAGTTTTATTTGCT	NA	False	NA	6	True	AATAAA	-18	NA	63110901	63132521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
ENSMUST00000025483.11	chr18	-	2687	15	FSM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	0	0	0	0	multi-exon	FALSE	canonical	3	2259	junction_14	785.439045946889	13028	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAAAACACTTTGCTGA	NA	False	NA	NA	False	AATAAA	-20	NA	64649679	64632728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
ENSMUST00000025484.9	chr18	-	2059	10	FSM	ENSMUSG00000024588.11	ENSMUST00000025484.9	2059	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_9	95.9785212597583	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGCTGTGTACGCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	64622134	64590335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595286_64597156_64597256_64600798_64600906_64603752_64603888_64608127_64608277_64611721_64611842_64621971
ENSMUST00000025506.7	chr18	+	2210	11	FSM	ENSMUSG00000024604.8	ENSMUST00000025506.7	2210	11	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_10	72.8288404411329	830	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTTTAAGACTGGATTA	NA	False	NA	35	True	ATTAAA	-45	NA	60693807	60705882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_60693952_60694322_60694377_60696837_60696868_60697434_60697568_60698689_60698791_60699424_60699598_60700442_60700644_60702428_60702594_60703852_60703942_60704071_60704204_60704894
ENSMUST00000025511.11	chr18	+	597	5	FSM	ENSMUSG00000024608.12	ENSMUST00000025511.11	597	5	0	0	0	0	multi-exon	FALSE	canonical	3	20921	junction_1	2863.01274883644	618602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTGGTGTTGTGT	NA	False	NA	68	True	AATAAA	-18	NA	60907667	60911618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_60907759_60909472_60909624_60910001_60910164_60910884_60910962_60911502
ENSMUST00000025515.7	chr18	+	4611	16	FSM	ENSMUSG00000024614.8	ENSMUST00000025515.7	4611	16	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_13	15.4033185457622	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTACCTTTAATATGTGT	4742	False	NA	25	True	AATAAA	-25	NA	90528277	90561391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653_90541754_90542404_90542483_90545999_90546067_90548183_90548283_90551106_90551165_90551344_90551399_90552505_90552563_90555198_90555329_90556622_90556692_90558062
ENSMUST00000025546.17	chr18	-	2124	12	FSM	ENSMUSG00000024644.18	ENSMUST00000025546.17	2124	12	0	0	0	0	multi-exon	FALSE	canonical	3	418	junction_11	64.2627612178223	2626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCGTGGTCTGACTTTCT	NA	False	NA	2	True	AATAAA	-25	NA	84703827	84685589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832_84696996_84699059_84699204_84699962_84700053_84703727
ENSMUST00000025549.14	chr18	+	534	6	FSM	ENSMUSG00000024646.15	ENSMUST00000025549.14	534	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	482.881600394962	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCGAAGCCGAAGAACTAAA	NA	False	NA	NA	False	NA	NA	NA	84869501	84897717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_84869733_84889629_84889759_84891264_84891295_84894958_84894978_84895951_84895987_84897627
ENSMUST00000025562.9	chr19	-	3236	18	FSM	ENSMUSG00000024660.10	ENSMUST00000025562.9	3236	18	0	0	0	0	multi-exon	FALSE	canonical	3	363	junction_14	47.6890156590894	935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCAGCAGTATGTCTTG	NA	False	NA	-3	True	NA	NA	NA	9876915	9849659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855161_9855491_9855613_9855682_9855793_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636_9871374_9872202_9872317_9872684_9872836_9876702
ENSMUST00000025563.8	chr19	+	929	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	0	0	0	0	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	59098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTGTGATTGAGGAT	4869	False	NA	23	True	AATAAA	-21	NA	9960009	9962462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
ENSMUST00000025568.3	chr19	-	1590	5	FSM	ENSMUSG00000024666.7	ENSMUST00000025568.3	1590	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_4	27.5896266738062	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGTGTCTTCATGGT	1510	False	NA	-4	True	AATAAA	-15	NA	10554726	10547841	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554447
ENSMUST00000025595.5	chr19	+	3267	4	FSM	ENSMUSG00000024691.14	ENSMUST00000025595.5	3267	4	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	5.90668171555645	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTTTTCTTTAGTTATT	NA	False	NA	4	True	AATAAA	-13	NA	12550886	12567126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_12550945_12554453_12554535_12561286_12561487_12564198
ENSMUST00000025642.14	chr19	+	2134	16	FSM	ENSMUSG00000024735.14	ENSMUST00000025642.14	2134	16	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	13.7346277707115	3232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCAGCTTCTTGTGTCTG	NA	False	NA	15	True	ATTAAA	-21	NA	10872594	10882896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876346_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
ENSMUST00000025649.10	chr19	+	4459	27	FSM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	0	0	0	0	multi-exon	FALSE	canonical	3	2606	junction_4	266.254060724097	2594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTTATTGGTCTCTGC	370	False	NA	56	True	AATAAA	-16	NA	10582690	10607183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
ENSMUST00000025651.6	chr19	-	2341	2	FSM	ENSMUSG00000024742.16	ENSMUST00000025651.6	2341	2	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_1	0	922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	2030	False	NA	NA	False	AATAAA	-14	NA	10181432	10176501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10178462_10181051
ENSMUST00000025679.11	chr19	-	1713	7	FSM	ENSMUSG00000024767.12	ENSMUST00000025679.11	1713	7	0	0	0	0	multi-exon	TRUE	canonical	3	1089	junction_1	76.373351955305	2834	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTGGCCCATGCATC	NA	False	NA	2	True	AATAAA	-26	NA	7183681	7175566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_7176605_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
ENSMUST00000025698.14	chr19	+	609	4	FSM	ENSMUSG00000024784.14	ENSMUST00000025698.14	609	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2.05480466765633	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCGCTCTTTATTAAATC	239	False	NA	NA	False	AATAAA	-16	NA	6276409	6277798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6276456_6276807_6276918_6277000_6277186_6277530
ENSMUST00000025702.14	chr19	-	1635	8	FSM	ENSMUSG00000024787.15	ENSMUST00000025702.14	1635	8	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_5	6.49018096662888	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGTCCATTTGCTTATTA	NA	False	NA	1	True	NA	NA	NA	6178334	6169428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6169985_6170515_6170774_6171408_6171553_6171812_6171961_6172069_6172186_6173859_6173981_6174182_6174219_6178078
ENSMUST00000025704.3	chr19	+	2024	6	FSM	ENSMUSG00000024791.11	ENSMUST00000025704.3	2024	6	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_5	42.0218990527558	1199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGCTTTTTATT	NA	False	NA	35	True	AATAAA	-20	NA	6135012	6141807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6135239_6135427_6135520_6136431_6136498_6136581_6136618_6140080_6140555_6140677
ENSMUST00000025707.9	chr19	-	1287	8	FSM	ENSMUSG00000024792.10	ENSMUST00000025707.9	1287	8	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_7	142.172789382555	1218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGAAGCAGCTTTTTC	6440	False	NA	NA	False	AATAAA	-18	NA	6134973	6130791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134893
ENSMUST00000025713.12	chr19	-	1471	10	FSM	ENSMUSG00000024799.17	ENSMUST00000025713.12	1471	10	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_3	30.8704981223334	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTTCTTCTATCC	9961	False	NA	0	True	AATAAA	-15	NA	6117872	6112850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
ENSMUST00000025714.9	chr19	+	1145	11	FSM	ENSMUSG00000024800.9	ENSMUST00000025714.9	1145	11	0	0	0	0	multi-exon	FALSE	canonical	3	930	junction_4	72.6416547168359	4415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTTTTAAATTTTACTA	NA	False	NA	NA	False	AATAAA	-26	NA	36061130	36082177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081735
ENSMUST00000025740.8	chr19	-	2081	11	FSM	ENSMUSG00000024824.8	ENSMUST00000025740.8	2081	11	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_4	40.0660704337224	925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGTGTGTTCCCCGTGAC	5998	False	NA	0	True	AATAAA	-15	NA	4251635	4245194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
ENSMUST00000025743.7	chr19	+	802	7	FSM	ENSMUSG00000024829.13	ENSMUST00000025743.7	802	7	0	0	0	0	multi-exon	FALSE	canonical	3	1715	junction_6	72.3058703625708	13433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGACTTGCTGTTAAA	7371	False	NA	13	True	NA	NA	NA	3333059	3341201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_3333172_3334759_3334818_3335309_3335396_3336874_3337039_3337702_3337756_3338983_3339088_3340976
ENSMUST00000025755.11	chr19	+	2340	5	FSM	ENSMUSG00000024837.16	ENSMUST00000025755.11	2340	5	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	4.08503365959205	958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTGTGTGTATATTTG	NA	False	NA	12	True	AATAAA	-20	NA	25482981	25581693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_25483566_25487043_25487228_25523182_25523467_25537230_25537376_25580550
ENSMUST00000025759.9	chr19	+	2556	6	FSM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	0	0	0	0	multi-exon	FALSE	canonical	3	703	junction_2	59.7581793564697	6685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTTTTATGAAGAGTT	1792	False	NA	23	True	AATAAA	-40	NA	5416768	5421554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
ENSMUST00000025767.14	chr19	-	1261	6	FSM	ENSMUSG00000024847.16	ENSMUST00000025767.14	1261	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_5	15.3310143173894	1363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCTTTGCAGAACTAATC	3902	False	NA	-21	True	TATAAA	-17	NA	4171575	4164463	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4164797_4165080_4165223_4165319_4165497_4165981_4166171_4168086_4168267_4171335
ENSMUST00000025773.5	chr19	+	913	4	FSM	ENSMUSG00000024854.5	ENSMUST00000025773.5	913	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	2.16024689946929	392	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGACCTTACATCTCTTA	NA	False	NA	6	True	AATAAA	-18	NA	4281952	4283688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4282243_4282516_4282607_4282801_4282914_4283267
ENSMUST00000025774.11	chr19	-	3222	21	FSM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	0	0	0	0	multi-exon	FALSE	canonical	3	1448	junction_15	340.757138589935	1862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	3866	False	NA	-25	True	AATAAA	-18	NA	5345483	5323959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
ENSMUST00000025779.11	chr19	+	1080	4	FSM	ENSMUSG00000024856.11	ENSMUST00000025779.11	1080	4	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_3	36.1754981536767	919	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTTTCTGTGTGTGGTT	6876	False	NA	34	True	AATAAA	-23	NA	4147181	4149017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4147508_4147816_4147918_4148004_4148138_4148497
ENSMUST00000025802.10	chr19	+	787	4	FSM	ENSMUSG00000110949.2	ENSMUST00000025802.10	787	4	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	10.4243305140746	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGGCATCTTCCGTGT	3513	False	NA	9	True	ATTAAA	-18	NA	4050579	4052103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4050848_4051195_4051329_4051627_4051706_4051795
ENSMUST00000025804.7	chr19	-	1913	6	FSM	ENSMUSG00000024870.7	ENSMUST00000025804.7	1913	6	0	0	0	0	multi-exon	FALSE	canonical	3	994	junction_1	78.6628247649422	1205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGGTGACTGAGTGTGG	1501	False	NA	0	True	AATAAA	-43	NA	5157100	5149232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5150601_5150694_5150827_5154668_5154765_5154860_5154957_5155205_5155279_5156952
ENSMUST00000025811.6	chr19	+	1488	8	FSM	ENSMUSG00000024875.6	ENSMUST00000025811.6	1488	8	0	0	0	0	multi-exon	FALSE	canonical	3	484	junction_7	32.2509294281512	3997	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTATTCATATTTTGTC	NA	False	NA	NA	False	GGGGCT	-14	NA	5138572	5142909	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5140031_5140111_5141395_5141454_5141568_5141725_5142156_5142251_5142329
ENSMUST00000025815.10	chr19	-	1929	15	FSM	ENSMUSG00000024878.10	ENSMUST00000025815.10	1929	15	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_14	17.2858618647773	987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAGTGTGATGGTACTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	24938965	24897279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_24898067_24898384_24898515_24899960_24900027_24900119_24900189_24905690_24905740_24909027_24909085_24915759_24915805_24918112_24918200_24920046_24920094_24925432_24925471_24926565_24926626_24930623_24930716_24932699_24932797_24935267_24935355_24938747
ENSMUST00000025823.6	chr19	-	1425	8	FSM	ENSMUSG00000024889.6	ENSMUST00000025823.6	1425	8	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_6	48.136286113662	722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGGTCTTGGAACCTTG	NA	False	NA	-13	True	ATTAAA	-17	NA	4675668	4672622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675125_4675220_4675324_4675460
ENSMUST00000025826.7	chr19	+	2401	12	FSM	ENSMUSG00000024891.7	ENSMUST00000025826.7	2401	12	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_10	25.5138918569071	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCCTGGAGTGTTCACT	4269	False	NA	18	True	ATTAAA	-19	NA	5074098	5081997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080319_5080519_5081029
ENSMUST00000025847.7	chr19	+	1215	10	FSM	ENSMUSG00000024911.8	ENSMUST00000025847.7	1215	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	35.2423706830007	947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGGTCCTTGTTCCA	NA	False	NA	15	True	AATAAA	-15	NA	5510656	5515077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513354_5513631_5513741_5513814_5513879_5514156_5514244_5514361_5514460_5514952
ENSMUST00000025851.4	chr19	-	2683	18	FSM	ENSMUSG00000063904.5	ENSMUST00000025851.4	2683	18	0	0	0	0	multi-exon	TRUE	canonical	3	495	junction_17	96.7659038009169	3175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCAGTGTATGTTTCTTT	NA	False	NA	-5	True	AATAAA	-17	NA	4978315	4957256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812_4977088_4978247
ENSMUST00000025885.6	chr19	-	699	4	FSM	ENSMUSG00000079478.10	ENSMUST00000025885.6	699	4	0	0	0	0	multi-exon	FALSE	canonical	3	466	junction_2	15.6276108929747	3120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTCTTTCTTGGTTCT	NA	False	NA	3	True	AAAACA	-17	NA	5781755	5780330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5780741_5781268_5781354_5781471_5781624_5781703
ENSMUST00000025890.10	chr19	-	2586	17	FSM	ENSMUSG00000024941.10	ENSMUST00000025890.10	2586	17	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	68.5770552007011	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGGTCCCAGCTCAGTC	9907	False	NA	-11	True	AATAAA	-13	NA	5821429	5808454	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809371_5809692_5809782_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
ENSMUST00000025891.11	chr19	-	3062	22	FSM	ENSMUSG00000024942.20	ENSMUST00000025891.11	3062	22	0	0	0	0	multi-exon	TRUE	canonical	2	82	junction_11	40.0795693849892	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGTCTCTGGGTGTTAT	2594	False	NA	-6	True	AATAAA	-14	NA	6065236	6038572	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6039418_6040021_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6046808_6046821_6047720_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326_6061461_6063618_6063738_6064025_6064096_6064230_6064499_6065135
ENSMUST00000025904.12	chr19	+	1262	6	NIC	ENSMUSG00000038812.17	novel	985	4	NA	NA	-2992	-728	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTCAAAGCGGAAGTGGT	6273	False	NA	NA	False	NA	NA	NA	6884073	6887474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr19_+_6884320_6884433_6884496_6884609_6884649_6884909_6885042_6885349_6885485_6886826
ENSMUST00000025910.13	chr19	+	1452	4	FSM	ENSMUSG00000024959.15	ENSMUST00000025910.13	1452	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	43.6526695123626	840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTATCCTTCGTTTGGG	8681	False	NA	16	True	AATAAA	-21	NA	6919228	6929267	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6919809_6920234_6920415_6928007_6928199_6928766
ENSMUST00000025915.13	chr19	-	1074	6	FSM	ENSMUSG00000024963.13	ENSMUST00000025915.13	1074	6	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_3	27.3978101314685	1390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9276	False	NA	-4	True	AATAAA	-17	NA	6969871	6965278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969526
ENSMUST00000025918.9	chr19	-	2108	14	FSM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	0	0	0	0	multi-exon	FALSE	canonical	3	2912	junction_9	209.620169317304	15165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3763	False	NA	-8	True	AATAAA	-29	NA	7017335	6998069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
ENSMUST00000025932.9	chr19	+	3965	9	FSM	ENSMUSG00000024976.15	ENSMUST00000025932.9	3965	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	123.021784148174	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCTTGTGTGTGTGGTGT	3932	False	NA	21	True	TATAAA	-24	NA	53933310	54021562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_53933445_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
ENSMUST00000025957.9	chr19	+	2307	9	FSM	ENSMUSG00000024993.16	ENSMUST00000025957.9	2307	9	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_1	50.1458809375207	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACTACTTGATGTC	NA	False	NA	NA	False	ATTAAA	-13	NA	60800048	60824665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_60800112_60803049_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
ENSMUST00000025961.7	chr19	-	1478	7	FSM	ENSMUSG00000024997.8	ENSMUST00000025961.7	1478	7	0	0	0	0	multi-exon	FALSE	canonical	3	658	junction_4	52.5148127251308	1460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGGCACCGTTTCTCC	1447	False	NA	-1	True	AATAAA	-34	NA	60862994	60852488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_60853158_60853603_60853770_60855953_60856058_60858441_60858578_60859857_60860000_60861565_60861702_60862869
ENSMUST00000025979.13	chr19	-	3527	19	FSM	ENSMUSG00000025007.14	ENSMUST00000025979.13	3527	19	0	0	0	0	multi-exon	FALSE	canonical	3	945	junction_12	98.5252364738204	718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	-11	True	AATAAA	-18	NA	40576907	40538700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
ENSMUST00000025981.15	chr19	-	2743	14	FSM	ENSMUSG00000025008.16	ENSMUST00000025981.15	2743	14	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_10	4.39337855732112	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGACTTTTTTTCTTG	NA	False	NA	-1	True	CATAAA	-17	NA	40600677	40584889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_40585987_40591248_40591387_40593749_40593904_40594146_40594242_40594669_40594778_40595721_40595848_40596069_40596151_40596663_40596700_40597135_40597252_40597345_40597455_40597645_40597777_40599737_40599857_40600094_40600219_40600368
ENSMUST00000025997.7	chr19	-	1948	6	FSM	ENSMUSG00000025024.8	ENSMUST00000025997.7	1948	6	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_4	26.9102211064867	1492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCAGTGTGTTAACAAAG	NA	False	NA	-8	True	AATAAA	-17	NA	53379009	53367826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_53369033_53369671_53369826_53371987_53372150_53372884_53373028_53377733_53377854_53378846
ENSMUST00000026009.10	chr19	-	843	6	FSM	ENSMUSG00000025035.10	ENSMUST00000026009.10	843	6	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	35.3870032639103	2635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTAAATGTCTCAGAGCA	NA	False	NA	-21	True	AATAAA	-35	NA	46561532	46519534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_46519826_46530790_46530977_46531920_46531972_46540011_46540129_46546676_46546821_46561478
ENSMUST00000026036.5	chrX	+	1808	2	FSM	ENSMUSG00000025056.5	ENSMUST00000026036.5	1808	2	0	0	0	0	multi-exon	FALSE	canonical	3	839	junction_1	0	2333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGACTGGAGAGTTTTCTTG	NA	False	NA	11	True	AATAAA	-23	NA	85235369	85239553	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_85236581_85238956
ENSMUST00000026050.8	chr19	+	1182	6	FSM	ENSMUSG00000025068.9	ENSMUST00000026050.8	1182	6	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_4	32.103582354622	3261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGTCCAAACCACCTCAG	8468	False	NA	21	True	ATTAAA	-30	NA	47843408	47853229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_47843562_47843653_47843763_47846297_47846521_47847870_47847970_47851817_47851922_47852735
ENSMUST00000026062.10	chr19	+	2350	7	FSM	ENSMUSG00000025076.13	ENSMUST00000026062.10	2350	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	6.36177822799744	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGACTGGTCCGGTCTG	NA	False	NA	14	True	ATTAAA	-15	NA	56385560	56430776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_56385750_56392847_56392958_56421673_56421811_56422233_56422363_56424658_56424835_56425150_56425281_56429297
ENSMUST00000026092.9	chr7	-	887	5	FSM	ENSMUSG00000025102.15	ENSMUST00000026092.9	887	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	120.296508677517	1406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTAGCAGTTTCGAGTGC	NA	False	NA	NA	False	AATAAA	-17	NA	81439226	81431929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439102
ENSMUST00000026129.16	chr11	-	1881	14	FSM	ENSMUSG00000025137.16	ENSMUST00000026129.16	1881	14	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_7	79.5574296680368	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	-6	True	AATAAA	-16	NA	120508762	120500912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120503855_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
ENSMUST00000026133.15	chr11	-	1861	8	FSM	ENSMUSG00000025140.16	ENSMUST00000026133.15	1861	8	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_7	93.9428832116752	1624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534574	120530241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
ENSMUST00000026135.15	chr11	+	1820	16	FSM	ENSMUSG00000025142.19	ENSMUST00000026135.15	1820	16	0	0	0	0	multi-exon	FALSE	canonical	3	887	junction_3	62.8477525453377	1819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120563817	120600273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUST00000026137.8	chr11	-	692	4	FSM	ENSMUSG00000025144.18	ENSMUST00000026137.8	692	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	156.895577446346	6953	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCTGCTTTCTCTTTGCC	NA	False	NA	-3	True	AATAAA	-18	NA	120604564	120601768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120602133_120602215_120602305_120602528_120602722_120604518
ENSMUST00000026139.14	chr11	+	2492	18	FSM	ENSMUSG00000025145.14	ENSMUST00000026139.14	2492	18	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_12	7.88805763716247	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCGTCCAGTTCCTTTCT	6064	False	NA	NA	False	GATAAA	-1	NA	120604750	120611954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120604880_120605098_120605355_120605743_120605806_120605975_120606047_120606246_120606426_120606631_120606761_120607881_120607995_120608305_120608365_120608650_120608729_120608862_120608999_120609069_120609148_120609267_120609380_120609475_120609547_120609865_120609959_120610291_120610385_120610759_120610934_120611011_120611160_120611443
ENSMUST00000026142.8	chrX	-	2821	13	FSM	ENSMUSG00000025151.17	ENSMUST00000026142.8	2821	13	0	0	0	0	multi-exon	TRUE	canonical	3	1240	junction_10	166.264514821681	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGTGCTTCTCATCTT	NA	False	NA	-2	True	AATAAA	-21	NA	93585749	93579079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
ENSMUST00000026144.5	chr11	-	892	8	FSM	ENSMUSG00000039450.12	ENSMUST00000026144.5	892	8	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	11.7438650940369	1134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGATCTGTGCTATCTG	9984	False	NA	-4	True	AATAAA	-37	NA	120618107	120616224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120616434_120616563_120616682_120616767_120616833_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
ENSMUST00000026154.9	chr19	+	1821	11	FSM	ENSMUSG00000025157.9	ENSMUST00000026154.9	1821	11	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_7	37.0513157661101	851	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4139	False	NA	18	True	AATAAA	-24	NA	41921928	41932543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
ENSMUST00000026159.6	chr11	-	982	4	FSM	ENSMUSG00000025163.7	ENSMUST00000026159.6	982	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	2.49443825784929	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTTGTTTTTGTTGCTTT	7896	False	NA	NA	False	AATAAA	-22	NA	120930244	120927572	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120927977_120928505_120928643_120928861_120929177_120930118
ENSMUST00000026169.7	chr11	-	1308	9	FSM	ENSMUSG00000025169.7	ENSMUST00000026169.7	1308	9	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_7	19.9483708607996	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGATCTGGGCGCTGC	NA	False	NA	-7	True	AGTAAA	-41	NA	121095537	121068416	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_121068765_121074236_121074361_121085905_121086060_121087562_121087620_121088256_121088322_121090591_121090635_121091736_121091813_121093716_121093935_121095314
ENSMUST00000026170.3	chr19	+	1529	3	FSM	ENSMUSG00000025171.3	ENSMUST00000026170.3	1529	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	5.5	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTAGCACATGACTTCC	NA	False	NA	10	True	AATAAA	-16	NA	41970201	42023082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_41970448_42020327_42020556_42022027
ENSMUST00000026173.13	chr11	-	2321	10	FSM	ENSMUSG00000025173.14	ENSMUST00000026173.13	2321	10	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_4	31.7350139610984	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAGAGCCATATGTAATG	NA	False	NA	1	True	AATAAA	-33	NA	121245271	121218049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221059_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
ENSMUST00000026196.14	chr19	-	2058	9	FSM	ENSMUSG00000025190.14	ENSMUST00000026196.14	2058	9	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_5	49.6934351801121	1994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTTTGTGATCCATTCA	8317	False	NA	-3	True	NA	NA	NA	43513044	43488190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_43488997_43491346_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
ENSMUST00000026199.14	chr19	+	1298	9	FSM	ENSMUSG00000025193.15	ENSMUST00000026199.14	1298	9	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	8.4400459121974	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGTTATAGTCTCAGG	9172	False	NA	9	True	AATAAA	-12	NA	43741434	43757070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_43741660_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751341_43751446_43753398_43753427_43755639_43755746_43756613
ENSMUST00000026221.7	chr19	+	5455	6	FSM	ENSMUSG00000025203.7	ENSMUST00000026221.7	5455	6	0	0	0	0	multi-exon	FALSE	canonical	3	2597	junction_1	100.817458805507	1689	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1067	False	NA	22	True	AATAAA	-23	NA	44282112	44295303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
ENSMUST00000026222.11	chr19	-	680	5	FSM	ENSMUSG00000025204.11	ENSMUST00000026222.11	680	5	0	0	0	0	multi-exon	FALSE	canonical	3	4404	junction_1	502.944517317765	56027	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCTCTTTCTCCAGG	1974	False	NA	-7	True	AATAAA	-29	NA	44543879	44538678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_44538852_44541136_44541293_44542107_44542208_44543369_44543497_44543755
ENSMUST00000026239.7	chr19	-	2324	9	FSM	ENSMUSG00000025218.7	ENSMUST00000026239.7	2324	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	11.9973955507018	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGCTGTCTGTGAGCT	NA	False	NA	2	True	AATAAA	-19	NA	45548970	45540713	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_45541610_45541947_45542117_45543529_45543659_45544360_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
ENSMUST00000026256.9	chr19	+	1348	4	FSM	ENSMUSG00000025226.12	ENSMUST00000026256.9	1348	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	4.08248290463863	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGTGGTGCATAGGGGAC	6313	False	NA	9	True	AATAAA	-18	NA	46316622	46318885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_46316966_46317113_46317268_46317526_46318033_46318540
ENSMUST00000026262.8	chr9	+	1996	14	FSM	ENSMUSG00000025232.9	ENSMUST00000026262.8	1996	14	0	0	0	0	multi-exon	FALSE	canonical	3	1100	junction_8	84.5408762866438	3249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTTGGGTTGCTTGTGT	NA	False	NA	32	True	AATAAA	-24	NA	59446822	59472392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59469578_59469652_59470149_59470334_59470506_59470598_59471165_59471271_59472103
ENSMUST00000026265.8	chr9	-	2518	16	FSM	ENSMUSG00000025235.9	ENSMUST00000026265.8	2518	16	0	0	0	0	multi-exon	TRUE	canonical	3	108	junction_2	13.5581054068119	330	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGATCACTGTCTGTCTT	NA	False	NA	-18	True	AATAAA	-2	NA	59260791	59229272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_59230266_59230670_59230873_59231319_59231462_59232072_59232143_59234469_59234642_59234738_59234892_59235862_59235932_59237700_59237756_59240762_59240891_59243646_59243701_59247093_59247167_59248369_59248482_59249770_59249835_59251342_59251423_59253082_59253135_59260692
ENSMUST00000026288.5	chrX	-	1508	8	FSM	ENSMUSG00000025257.6	ENSMUST00000026288.5	1508	8	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_7	14.6816559150582	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTGTCGTAAGAGTA	NA	False	NA	-2	True	AATAAA	-17	NA	150799291	150787577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_150787807_150787914_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799158
ENSMUST00000026289.10	chrX	-	962	6	Antisense	novelGene_ENSMUSG00000025260.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17493	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCGACGCAGAGCCGCCTA	NA	False	NA	NA	False	NA	NA	NA	150787438	150784840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chrX_-_150784931_150785273_150785439_150786356_150786522_150786648_150786778_150786857_150786967_150787134
ENSMUST00000026303.16	chrX	-	1884	6	FSM	ENSMUSG00000025269.17	ENSMUST00000026303.16	1884	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	8.28009661779378	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCATGTTGAGTGGATAT	NA	False	NA	-4	True	AATAAA	-21	NA	149371145	149354503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369042_149370038_149370123_149370918
ENSMUST00000026318.15	chrX	-	1162	6	FSM	ENSMUSG00000025283.16	ENSMUST00000026318.15	1162	6	0	0	0	0	multi-exon	FALSE	canonical	3	1003	junction_1	103.839106313566	9031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGCATTTTTACTAGT	NA	False	NA	-7	True	AATAAA	-24	NA	153999445	153996127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998596_153998681_153998780_153998833_153999098
ENSMUST00000026324.10	chrX	+	1752	15	FSM	ENSMUSG00000025287.16	ENSMUST00000026324.10	1752	15	0	0	0	0	multi-exon	FALSE	canonical	2	666	junction_2	111.349262068796	6058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGAGTCTCCCATGTTGT	NA	False	NA	26	True	AATAAA	-20	NA	154045438	154080650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ENSMUST00000026328.11	chrX	-	990	7	FSM	ENSMUSG00000025289.16	ENSMUST00000026328.11	990	7	0	0	0	0	multi-exon	FALSE	canonical	3	951	junction_2	71.6488349909163	8673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGTTTGCCATTGTAATTT	NA	False	NA	-1	True	AATAAA	-22	NA	154121463	154106913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_154107025_154109590_154109626_154111441_154111573_154113298_154113422_154115351_154115469_154117833_154117952_154121108
ENSMUST00000026387.11	chr5	-	1548	5	FSM	ENSMUSG00000025337.11	ENSMUST00000026387.11	1548	5	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_4	74.8765650921568	4059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTTGCATTTCTAGT	NA	False	NA	0	True	AATAAA	-17	NA	130284371	130274571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130284050
ENSMUST00000026405.10	chr10	-	550	4	FSM	ENSMUSG00000090247.8	ENSMUST00000026405.10	550	4	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_1	37.4788829431544	6146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGTGTGTTTGAAGGAG	NA	False	NA	-1	True	AATAAA	-19	NA	128759393	128755782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128755977_128756427_128756561_128758522_128758596_128759243
ENSMUST00000026409.5	chr10	-	1573	4	FSM	ENSMUSG00000025353.6	ENSMUST00000026409.5	1573	4	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_3	176.577335905703	5452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATCAGTTTCCACTC	NA	False	NA	NA	False	AATAAA	-15	NA	128657463	128653770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128654885_128655822_128655975_128656129_128656384_128657410
ENSMUST00000026414.9	chr10	-	2834	24	FSM	ENSMUSG00000025357.9	ENSMUST00000026414.9	2834	24	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_14	14.5196561901106	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTCCCGCAAGGTTCTGA	9991	False	NA	-10	True	AATAAA	-16	NA	128579944	128556002	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128556376_128556585_128556647_128556820_128556942_128557046_128557246_128558322_128558414_128559053_128559119_128559387_128559549_128563936_128564027_128564124_128564211_128565467_128565540_128565743_128565818_128566059_128566129_128566473_128566573_128566936_128567057_128567192_128567282_128568851_128568967_128569133_128569254_128569433_128569509_128569956_128570007_128571699_128571778_128572009_128572146_128572513_128572588_128572877_128573014_128579664
ENSMUST00000026415.9	chr10	-	2240	7	FSM	ENSMUSG00000025358.17	ENSMUST00000026415.9	2240	7	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_2	273.112309011024	743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTGAATCTCTTTCATAT	8275	False	NA	-16	True	ATTAAA	-20	NA	128540872	128533807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128535080_128535340_128535545_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
ENSMUST00000026416.15	chr10	-	2406	8	FSM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	0	0	0	0	multi-exon	FALSE	canonical	3	682	junction_2	218.467295455575	789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGAGTGAATCTCTTT	8248	False	NA	-21	True	ATTAAA	-15	NA	128540899	128533812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
ENSMUST00000026420.7	chr10	-	681	4	FSM	ENSMUSG00000025362.7	ENSMUST00000026420.7	681	4	0	0	0	0	multi-exon	FALSE	canonical	3	11844	junction_3	3964.03030036631	303594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCATCGGAGTGTGTT	NA	False	NA	-12	True	NA	NA	NA	128462616	128460405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128460506_128461075_128461207_128461931_128462110_128462344
ENSMUST00000026425.13	chr10	-	2432	12	FSM	ENSMUSG00000025364.14	ENSMUST00000026425.13	2432	12	0	0	0	0	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	18003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTTGTGTGTTCTCTTTG	8745	False	NA	-5	True	AATAAA	-14	NA	128401803	128393634	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
ENSMUST00000026428.4	chr10	-	1026	7	FSM	ENSMUSG00000039824.5	ENSMUST00000026428.4	1026	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.63299316185545	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGTTTCCGACAGTTTT	3414	False	NA	-10	True	AATAAA	-14	NA	128334554	128330025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128330353_128330458_128330537_128330922_128331097_128332121_128332266_128332482_128332511_128333069_128333287_128334496
ENSMUST00000026434.13	chr11	+	1557	8	FSM	ENSMUSG00000025371.13	ENSMUST00000026434.13	1557	8	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_5	11.6303613925986	1054	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTTTAGTGTCTTGGT	NA	False	NA	18	True	ATTAAA	-33	NA	119804635	119810374	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_119804764_119806238_119806349_119806457_119806546_119806850_119806938_119807506_119807573_119807754_119807836_119808809_119808865_119809432
ENSMUST00000026439.14	chr10	-	1130	7	FSM	ENSMUSG00000025374.14	ENSMUST00000026439.14	1130	7	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	32.5444140965679	1825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTCTGTGTTTCTC	NA	False	NA	-7	True	AATAAA	-13	NA	128245743	128237263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115_128245218_128245604
ENSMUST00000026446.4	chr10	+	763	6	FSM	ENSMUSG00000025381.4	ENSMUST00000026446.4	763	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	1015.96602305392	1865	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACTGTGTTGTCTTTTTT	NA	False	NA	33	True	AATGAA	-29	NA	128158336	128163056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128158400_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
ENSMUST00000026459.6	chr10	+	1916	10	FSM	ENSMUSG00000025393.13	ENSMUST00000026459.6	1916	10	0	0	0	0	multi-exon	FALSE	canonical	3	8904	junction_3	854.417771581948	31172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATGGGCCTTGTGTTTC	NA	False	NA	11	True	ATTAAA	-22	NA	127919141	127926260	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
ENSMUST00000026461.8	chr10	+	1583	13	FSM	ENSMUSG00000025395.15	ENSMUST00000026461.8	1583	13	0	0	0	0	multi-exon	FALSE	canonical	2	393	junction_7	89.7794751970998	5470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTGCTCGGTTCTACCC	984	False	NA	18	True	TATAAA	-20	NA	127851040	127865906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
ENSMUST00000026470.6	chr10	-	2289	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	0	0	0	0	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	3543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTATTTTGCCCACGG	NA	False	NA	-21	True	NA	NA	NA	127358313	127353007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
ENSMUST00000026475.15	chr10	+	890	4	FSM	ENSMUSG00000025408.16	ENSMUST00000026475.15	890	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	321.555593949165	12084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCACTTTTTCTTCTT	NA	False	NA	29	True	AGTAAA	-18	NA	127126642	127132157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127126761_127129580_127129629_127131189_127131348_127131591
ENSMUST00000026479.11	chr10	+	1784	14	FSM	ENSMUSG00000025410.11	ENSMUST00000026479.11	1784	14	0	0	0	0	multi-exon	FALSE	canonical	3	604	junction_8	36.9826442582377	1742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAACCAGAGTTTCAAAATA	9216	False	NA	16	True	AATAAA	-18	NA	127102255	127117819	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
ENSMUST00000026480.13	chr4	-	2121	10	FSM	ENSMUSG00000025413.14	ENSMUST00000026480.13	2121	10	0	0	0	0	multi-exon	TRUE	canonical	3	276	junction_4	15.561903466677	347	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTGTTTGTGTCCT	NA	False	NA	1	True	ATTAAA	-41	NA	106536141	106519452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_106520429_106522852_106522936_106524692_106524775_106525233_106525452_106527645_106527733_106528820_106528946_106531607_106531686_106533794_106533957_106535381_106535500_106535949
ENSMUST00000026485.15	chr18	+	1640	8	FSM	ENSMUSG00000025421.16	ENSMUST00000026485.15	1640	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	170.606361581991	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAATTAGACATTGTT	NA	False	NA	19	True	NA	NA	NA	77032079	77059101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_77032224_77033038_77033054_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
ENSMUST00000026487.6	chr18	+	1402	3	FSM	ENSMUSG00000090000.3	ENSMUST00000026487.6	1402	3	0	0	0	0	multi-exon	FALSE	canonical	3	1641	junction_2	78	15083	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGTCTGATTTATGCCTT	NA	False	NA	15	True	AATAAA	-17	NA	77017712	77029308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_77017913_77027263_77027366_77028208
ENSMUST00000026495.15	chr18	+	2471	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	0	0	0	0	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	35974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTGGTTGATGAGTC	NA	False	NA	20	True	ATTAAA	-22	NA	77861428	77870569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
ENSMUST00000026504.13	chr10	-	903	6	FSM	ENSMUSG00000025436.13	ENSMUST00000026504.13	903	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	67.2767418949521	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGTTTGACACATTACT	NA	False	NA	-26	True	AATAAA	-19	NA	126737224	126704295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_126704595_126727508_126727593_126730093_126730232_126734755_126734838_126735449_126735496_126736970
ENSMUST00000026506.5	chr7	+	1504	7	FSM	ENSMUSG00000025439.6	ENSMUST00000026506.5	1504	7	0	0	0	0	multi-exon	FALSE	canonical	3	1088	junction_4	64.1950153828161	5544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGCTGTGATTTTGCTCT	NA	False	NA	11	True	AATAAA	-17	NA	97345840	97368086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_97346077_97354795_97354933_97360906_97361006_97361833_97361942_97363113_97363288_97365657_97365747_97367425
ENSMUST00000026519.10	chr13	+	2565	13	FSM	ENSMUSG00000062822.9	ENSMUST00000026519.10	2565	13	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	23.5189049253763	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	9	True	AATAAA	-19	NA	119599303	119622653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
ENSMUST00000026538.13	chr7	-	1557	8	FSM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	0	0	0	0	multi-exon	FALSE	canonical	3	1613	junction_2	95.2071854602651	7822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTTTTTAACT	NA	False	NA	-1	True	NA	NA	NA	139696389	139685622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139691709_139692331_139692460_139692848_139693047_139696219
ENSMUST00000026539.14	chr7	-	685	6	FSM	ENSMUSG00000025466.20	ENSMUST00000026539.14	685	6	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_5	86.8506764510214	2340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1471	False	NA	0	True	NA	NA	NA	139682354	139679382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
ENSMUST00000026540.9	chr7	+	620	5	FSM	ENSMUSG00000025467.9	ENSMUST00000026540.9	620	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	1.08972473588517	274	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAATGCGTGTCTTTAAG	NA	False	NA	NA	False	AATAAA	-18	NA	139673307	139677113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_139673382_139674944_139675012_139676062_139676116_139676586_139676694_139676794
ENSMUST00000026547.9	chr7	-	2960	18	FSM	ENSMUSG00000025474.10	ENSMUST00000026547.9	2960	18	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_17	73.93539684464	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGCATTATTACTG	NA	False	NA	NA	False	NA	NA	NA	139616179	139575908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616008
ENSMUST00000026553.6	chr7	-	1460	13	FSM	ENSMUSG00000025480.6	ENSMUST00000026553.6	1460	13	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_11	16.7779617355625	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTATATTGTGTGTG	NA	False	NA	0	True	AATAAA	-18	NA	140367765	140357141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360445_140360787_140360848_140361939_140362003_140367648
ENSMUST00000026554.11	chr7	+	890	3	FSM	ENSMUSG00000025481.13	ENSMUST00000026554.11	890	3	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	2	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAATCTGAACCTATCATT	NA	False	NA	27	True	AATAAA	-17	NA	140415191	140417879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140415665_140416659_140416796_140417598
ENSMUST00000026559.14	chr7	-	1461	7	FSM	ENSMUSG00000025486.18	ENSMUST00000026559.14	1461	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_6	79.4187215543875	845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	False	NA	-14	True	AATAAA	-14	NA	140462222	140443582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458059_140462070
ENSMUST00000026560.14	chr7	+	1989	13	FSM	ENSMUSG00000025487.16	ENSMUST00000026560.14	1989	13	0	0	0	0	multi-exon	FALSE	canonical	3	1065	junction_10	109.792987025584	8150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTGCTTCTGTTCTT	NA	False	NA	28	True	AATAAA	-16	NA	140461880	140478555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
ENSMUST00000026564.9	chr7	+	736	2	FSM	ENSMUSG00000025491.15	ENSMUST00000026564.9	736	2	0	0	0	0	multi-exon	FALSE	canonical	3	1139	junction_1	0	12441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTAGTCCTGTGTTGAGT	NA	False	NA	24	True	AATAAA	-28	NA	140547952	140549738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140548352_140549401
ENSMUST00000026565.7	chr7	-	678	2	FSM	ENSMUSG00000025492.7	ENSMUST00000026565.7	678	2	0	0	0	0	multi-exon	FALSE	canonical	3	1854	junction_1	0	22402	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTGCTTTTATTCCTC	NA	False	NA	2	True	AATAAA	-23	NA	140590683	140589498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140589803_140590309
ENSMUST00000026576.5	chr7	+	1229	8	FSM	ENSMUSG00000025503.6	ENSMUST00000026576.5	1229	8	0	0	0	0	multi-exon	FALSE	canonical	3	3267	junction_3	222.11993450864	18392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTCATTTCACCGTC	3840	False	NA	18	True	ATTAAA	-17	NA	140972111	140982881	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140972232_140975961_140976086_140978407_140978516_140980200_140980333_140981493_140981670_140981784_140981983_140982096_140982243_140982656
ENSMUST00000026585.14	chr7	+	1466	8	FSM	ENSMUSG00000025511.16	ENSMUST00000026585.14	1466	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	68.6787850082111	657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGAAGTTCTTTCATTT	3491	False	NA	45	True	NA	NA	NA	141055152	141073340	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_141055411_141062399_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
ENSMUST00000026595.13	chr8	+	1122	6	FSM	ENSMUSG00000025521.16	ENSMUST00000026595.13	1122	6	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_4	36.201657420621	642	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTTTTGTATGTTGTGA	NA	False	NA	25	True	TATAAA	-17	NA	65399836	65421685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_65399986_65409037_65409185_65411996_65412262_65416849_65416985_65418190_65418294_65421362
ENSMUST00000026599.10	chrX	+	1359	9	FSM	ENSMUSG00000025525.13	ENSMUST00000026599.10	1359	9	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_1	40.3205902734571	3494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGCTTTGTTTATTTAT	NA	False	NA	7	True	AATAAA	-20	NA	111221030	111282452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_111221134_111243497_111243603_111255934_111256055_111259497_111259553_111260996_111261096_111263857_111263950_111273853_111273968_111274158_111274268_111281890
ENSMUST00000026608.11	chr5	+	1492	6	FSM	ENSMUSG00000025532.14	ENSMUST00000026608.11	1492	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_4	51.2382669496149	903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGCCACCATACCTGG	NA	False	NA	5	True	AAAACA	-1	NA	130058130	130089630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545
ENSMUST00000026613.14	chr5	-	2687	12	FSM	ENSMUSG00000025534.18	ENSMUST00000026613.14	2687	12	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_6	16.6092675514317	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTCTTTCGTTACTATC	NA	False	NA	NA	False	NA	NA	NA	130031890	130017851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767_130028911_130029201_130029384_130029597_130029784_130031447
ENSMUST00000026624.11	chr14	+	3107	17	FSM	ENSMUSG00000025544.14	ENSMUST00000026624.11	3107	17	0	0	0	0	multi-exon	TRUE	canonical	3	817	junction_12	125.603480743967	762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTCCAAAGTGTAGTAATT	NA	False	NA	18	True	ATTAAA	-20	NA	122344449	122397016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
ENSMUST00000026625.7	chr14	+	1231	8	FSM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	0	0	0	0	multi-exon	FALSE	canonical	3	643	junction_7	45.2372430997437	1167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	12	True	AATAAA	-22	NA	122419115	122639646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_122419194_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
ENSMUST00000026649.14	chr11	+	1520	4	FSM	ENSMUSG00000048277.16	ENSMUST00000026649.14	1520	4	0	0	0	0	multi-exon	FALSE	canonical	3	588	junction_1	45.536310297998	2661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTTGTGCTGGGTGGCGC	NA	False	NA	14	True	AATAAA	-14	NA	117700493	117705109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_117700630_117703284_117703523_117703871_117704012_117704103
ENSMUST00000026667.15	chr11	-	1509	12	FSM	ENSMUSG00000025580.16	ENSMUST00000026667.15	1509	12	0	0	0	0	multi-exon	FALSE	canonical	2	960	junction_1	150.634415963708	7742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	-10	True	ATTAAA	-20	NA	119190915	119179188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
ENSMUST00000026704.14	chr16	-	2394	15	FSM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	0	0	0	0	multi-exon	FALSE	canonical	3	4287	junction_9	381.591725405517	18980	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAGGTGAACATAATTTAT	NA	False	NA	-13	True	AATAAA	-28	NA	87292761	87280213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
ENSMUST00000026710.12	chr16	+	3205	18	FSM	ENSMUSG00000025616.15	ENSMUST00000026710.12	3205	18	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_5	31.0441141639032	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTATTAGAGTTTAAGT	NA	False	NA	10	True	AATAAA	-18	NA	87251590	87280405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241_87267338_87268599_87268731_87268968_87269057_87269994_87270074_87271469_87271562_87272304_87272362_87273601_87273776_87276013_87276678_87277762_87277858_87278601_87278689_87279747_87279905_87279994
ENSMUST00000026723.9	chrX	+	1289	9	FSM	ENSMUSG00000025630.9	ENSMUST00000026723.9	1289	9	0	0	0	0	multi-exon	FALSE	canonical	3	2155	junction_4	129.05328356923	10341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCACTTTTTGAATTCTTT	NA	False	NA	12	True	AATAAA	-16	NA	52077013	52110536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52101153_52101172_52105223_52105307_52108981_52109029_52109199_52109277_52109943
ENSMUST00000026735.9	chr9	+	1526	4	FSM	ENSMUSG00000025645.9	ENSMUST00000026735.9	1526	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	5.71547606649408	658	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAGTTATATCAGACTCAG	NA	False	NA	14	True	ATTAAA	-28	NA	108911560	108921557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108911636_108918404_108918716_108919908_108920074_108920582
ENSMUST00000026737.12	chr9	+	1834	6	FSM	ENSMUSG00000025647.17	ENSMUST00000026737.12	1834	6	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	42.9678949914934	957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCTTTCTTCAGCGCCT	NA	False	NA	18	True	AATAAA	-18	NA	108867652	108886792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108867833_108869937_108870095_108880434_108880522_108885045_108885162_108885354_108885574_108885717
ENSMUST00000026743.14	chr9	+	1653	13	FSM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	0	0	0	0	multi-exon	FALSE	canonical	3	5755	junction_3	194.83802033142	16970	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	18	True	AATAAA	-14	NA	108765700	108778691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
ENSMUST00000026760.3	chrX	+	4007	3	FSM	ENSMUSG00000025666.17	ENSMUST00000026760.3	4007	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_2	10.5	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTACTTTGTGTCTTC	NA	False	NA	18	True	ATTAAA	-24	NA	80114321	80141478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_80114767_80127896_80128038_80138057
ENSMUST00000026816.15	chr7	-	2114	8	FSM	ENSMUSG00000025722.17	ENSMUST00000026816.15	2114	8	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_7	16.071269840486	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTGTGTGTATGAGT	NA	False	NA	-3	True	AATAAA	-16	NA	80551017	80540470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391_80550460_80550932
ENSMUST00000026817.11	chr7	-	705	3	FSM	ENSMUSG00000025723.13	ENSMUST00000026817.11	705	3	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	1.5	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTCTGGGCCTCTCCTTCC	NA	False	NA	NA	False	AATAAA	-21	NA	80554824	80551975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_80552252_80553881_80554055_80554568
ENSMUST00000026818.12	chr7	-	1345	6	FSM	ENSMUSG00000025724.13	ENSMUST00000026818.12	1345	6	0	0	0	0	multi-exon	FALSE	canonical	3	936	junction_3	43.4391528462515	8136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTCCCTGAATTCTGT	1385	False	NA	-5	True	AATAAA	-18	NA	80597528	80565124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_80565653_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
ENSMUST00000026828.7	chr17	-	842	5	FSM	ENSMUSG00000025732.7	ENSMUST00000026828.7	842	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	22.6770809408971	1547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCGGGTGTTGGTGATTG	7762	False	NA	-4	True	AATAAA	-15	NA	26087738	26082671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26083014_26083224_26083327_26083567_26083696_26087387_26087518_26087598
ENSMUST00000026833.6	chr17	+	3099	9	FSM	ENSMUSG00000025737.6	ENSMUST00000026833.6	3099	9	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	16.5529453572468	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTGTCACTTTCATTG	NA	False	NA	18	True	AATAAA	-20	NA	26042600	26047704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26043661_26044627_26044806_26044925_26045599_26046008_26046128_26046208_26046331_26046401_26046507_26046626_26046968_26047127_26047313_26047388
ENSMUST00000026839.5	chrX	-	3699	7	FSM	ENSMUSG00000025742.6	ENSMUST00000026839.5	3699	7	0	0	0	0	multi-exon	TRUE	canonical	3	187	junction_5	11.6535640709422	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTCTTGTCATCCTTTTG	NA	False	NA	-3	True	AATAAA	-24	NA	166165745	166129317	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156998_166157183_166165465
ENSMUST00000026841.15	chr5	+	2033	16	FSM	ENSMUSG00000059447.14	ENSMUST00000026841.15	2033	16	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_6	59.1301389591918	1579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAGTCTCGTTATTAGTGG	NA	False	NA	10	True	AATAAA	-25	NA	30360245	30389591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_30360338_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
ENSMUST00000026843.12	chr5	-	2552	20	FSM	ENSMUSG00000025745.13	ENSMUST00000026843.12	2552	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	102.267992951223	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGGCCTGTTTTCTTCT	NA	False	NA	-3	True	AATAAA	-23	NA	30359974	30324423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_30324959_30325042_30325064_30325717_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
ENSMUST00000026858.11	chr3	+	3479	16	FSM	ENSMUSG00000025758.11	ENSMUST00000026858.11	3479	16	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_10	36.6472675955824	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTTTATTGGCTAAATA	7785	False	NA	27	True	AATAAA	-23	NA	40754453	40771318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_40754719_40755434_40755531_40756219_40756316_40756392_40756508_40759442_40760356_40760921_40761023_40763181_40763544_40764711_40764817_40765096_40765200_40765668_40765819_40766314_40766449_40766528_40766621_40767165_40767311_40767900_40768027_40769416_40769524_40770749
ENSMUST00000026881.11	chr1	+	632	5	FSM	ENSMUSG00000025779.11	ENSMUST00000026881.11	632	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	0.707106781186548	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTTCTGTTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	16758656	16779835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_16758844_16761907_16761998_16771018_16771148_16776396_16776450_16779662
ENSMUST00000026887.14	chr2	-	1060	9	FSM	ENSMUSG00000025781.15	ENSMUST00000026887.14	1060	9	0	0	0	0	multi-exon	TRUE	canonical	3	78	junction_1	1503.84357564209	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAATTGTAACTTTCAGAA	9587	False	NA	12	True	AATAAA	-33	NA	10085238	10060826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_10060973_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
ENSMUST00000026891.5	chr9	+	1053	8	FSM	ENSMUSG00000025785.6	ENSMUST00000026891.5	1053	8	0	0	0	0	multi-exon	FALSE	canonical	3	1140	junction_3	103.377058995362	6541	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTTGTTAGCATCTCC	NA	False	NA	15	True	AATAAA	-20	NA	122942279	122965194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_122942388_122947955_122948058_122948305_122948401_122956870_122957037_122959588_122959660_122959891_122960016_122960949_122961106_122964963
ENSMUST00000026895.14	chr7	-	1571	9	FSM	ENSMUSG00000078671.12	ENSMUST00000026895.14	1571	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	14.3330910832242	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCAGAGTTGAATAAGCAG	NA	False	NA	NA	False	NA	NA	NA	73191493	73150727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
ENSMUST00000026899.4	chr11	+	2023	11	FSM	ENSMUSG00000025792.10	ENSMUST00000026899.4	2023	11	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_8	8.74356906531881	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGGGGGCTGGCAGATC	NA	False	NA	23	True	AATAAA	-37	NA	120382665	120390013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120382903_120385302_120385423_120385785_120385901_120385985_120386035_120386271_120386314_120387248_120387293_120387461_120387533_120387839_120387933_120388209_120388288_120388745_120388803_120388896
ENSMUST00000026901.12	chr7	+	653	1	FSM	ENSMUSG00000046721.12	ENSMUST00000026901.12	653	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTACACAGAATAATAAAAGT	NA	False	NA	NA	False	AAGAAA	-9	NA	44974388	44975041	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44974400_44975000
ENSMUST00000026986.7	chr13	+	648	2	FSM	ENSMUSG00000025868.7	ENSMUST00000026986.7	648	2	0	0	0	0	multi-exon	FALSE	canonical	3	1416	junction_1	0	14599	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTCTTAATCTCATTCC	5978	False	NA	23	True	AATAAA	-27	NA	54738019	54738971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_54738233_54738536
ENSMUST00000026987.12	chr13	-	1756	5	FSM	ENSMUSG00000025869.12	ENSMUST00000026987.12	1756	5	0	0	0	0	multi-exon	FALSE	canonical	3	1006	junction_4	30.4302481094059	4883	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGATGCACTTTTATTT	NA	False	NA	-3	True	NA	NA	NA	54737903	54731997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_54733238_54733632_54733740_54736410_54736481_54737475_54737585_54737673
ENSMUST00000026989.15	chr13	-	2727	9	FSM	ENSMUSG00000025871.19	ENSMUST00000026989.15	2727	9	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_7	24.8696602308918	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTCTTGTCCATTCTG	NA	False	NA	NA	False	AATAAA	-26	NA	54713248	54699030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54711997_54712086_54712327_54712435_54712994
ENSMUST00000026990.6	chr13	-	2335	6	FSM	ENSMUSG00000025872.6	ENSMUST00000026990.6	2335	6	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_3	36.0699320764539	2469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTGTCTAAAGTTACTA	NA	False	NA	-3	True	AATAAA	-15	NA	54616662	54606649	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_54608051_54611284_54611386_54611494_54611657_54613992_54614198_54615638_54615796_54616353
ENSMUST00000026991.16	chr13	+	1748	11	FSM	ENSMUSG00000025873.17	ENSMUST00000026991.16	1748	11	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_3	87.926617130423	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAATGAGGCTGACTTA	NA	False	NA	1	True	NA	NA	NA	54769636	54809399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_54769717_54786062_54786132_54789231_54789310_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
ENSMUST00000026993.14	chr13	+	1585	8	FSM	ENSMUSG00000025875.15	ENSMUST00000026993.14	1585	8	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_3	20.9606044468071	1221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGGTTTATGTTCACCGT	NA	False	NA	18	True	AATAAA	-19	NA	54937189	54944589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969
ENSMUST00000027036.11	chr1	+	2507	9	FSM	ENSMUSG00000025903.15	ENSMUST00000027036.11	2507	9	0	0	0	0	multi-exon	FALSE	canonical	3	734	junction_8	45.3636349403352	2484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTTATATAGTACTGTT	NA	False	NA	21	True	AATAAA	-22	NA	4878045	4916962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
ENSMUST00000027050.10	chr1	-	1698	8	FSM	ENSMUSG00000025917.10	ENSMUST00000027050.10	1698	8	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_7	104.105715501119	7830	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCTGACTGGCCTGAGT	NA	False	NA	-1	True	AGTAAA	-40	NA	10108352	10094825	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107894
ENSMUST00000027057.8	chr1	+	1581	9	FSM	ENSMUSG00000025925.15	ENSMUST00000027057.8	1581	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	336.315978656977	4033	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCCACCTAGCATTGA	NA	False	NA	51	True	TATAAA	-11	NA	15875887	15913694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_15876182_15877864_15877961_15883264_15883387_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
ENSMUST00000027062.7	chr1	-	1741	2	FSM	ENSMUSG00000025930.7	ENSMUST00000027062.7	1741	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCATTGTAAAAGTTCTT	NA	False	NA	4	True	AATAAA	-21	NA	14826214	14823569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_14824550_14825453
ENSMUST00000027089.15	chr1	-	783	3	FSM	ENSMUSG00000025952.16	ENSMUST00000027089.15	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	198	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTTATTCTTTCATTG	688	False	NA	6	True	AATAAA	-32	NA	65112848	65110683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_65111031_65112320_65112564_65112655
ENSMUST00000027108.13	chr1	+	802	6	FSM	ENSMUSG00000025967.17	ENSMUST00000027108.13	802	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	1594.84562262308	1299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTCAGTGCACTTAAATAAA	NA	False	NA	-4	True	TTTAAA	-10	NA	63216303	63218781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_63216451_63216881_63217036_63217581_63217725_63217990_63218058_63218406_63218533_63218616
ENSMUST00000027111.15	chr1	-	2661	19	FSM	ENSMUSG00000025968.17	ENSMUST00000027111.15	2661	19	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_18	130.918608680223	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-31	NA	63215981	63182754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215744
ENSMUST00000027123.15	chr1	-	2423	12	FSM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	0	0	0	0	multi-exon	FALSE	canonical	2	4506	junction_7	645.86437693097	11626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4455	False	NA	-6	True	AATAAA	-16	NA	55127183	55116993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
ENSMUST00000027125.7	chr1	+	1733	5	FSM	ENSMUSG00000025981.14	ENSMUST00000027125.7	1733	5	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_4	22.7486263321547	789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGTTATTTAAATCTTT	3559	False	NA	22	True	AATAAA	-28	NA	55091928	55111861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_55092150_55100433_55100584_55103339_55103533_55106655_55106758_55110794
ENSMUST00000027139.15	chr1	+	2953	21	FSM	ENSMUSG00000025995.17	ENSMUST00000027139.15	2953	21	0	0	0	0	multi-exon	FALSE	canonical	3	530	junction_5	51.2145243070752	934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAGCCTTGTGTTTAT	NA	False	NA	8	True	TATAAA	-24	NA	45834325	45862779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846920_45851200_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648_45858819_45859290_45859351_45861607_45861755_45862042_45862135_45862467
ENSMUST00000027153.6	chr1	-	1916	11	FSM	ENSMUSG00000026003.6	ENSMUST00000027153.6	1916	11	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_4	12.5315601582564	2403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGCCCTGGGGAATGAGA	NA	False	NA	-19	True	AATAAA	-29	NA	66902436	66869997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_66870687_66876120_66876208_66877437_66877566_66880780_66880895_66882239_66882342_66884326_66884492_66887558_66887626_66892285_66892451_66893782_66893921_66896557_66896714_66902331
ENSMUST00000027157.10	chr1	+	2692	6	FSM	ENSMUSG00000026005.16	ENSMUST00000027157.10	2692	6	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_1	56.5840967056999	2613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAACTTGAATTCTTGAT	NA	False	NA	5	True	ATTAAA	-12	NA	66739989	66758964	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_66740188_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
ENSMUST00000027193.9	chr1	+	763	3	FSM	ENSMUSG00000026032.9	ENSMUST00000027193.9	763	3	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_1	90.5	19260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTCCCTCTAACCTCA	NA	False	NA	52	True	AATAAA	-20	NA	58625542	58635123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_58625830_58630248_58630409_58634807
ENSMUST00000027198.12	chr1	-	3561	18	FSM	ENSMUSG00000026037.15	ENSMUST00000027198.12	3561	18	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_12	52.5802073093293	985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTAGTTTTGTTTTGA	NA	False	NA	0	True	AATAAA	-23	NA	58544268	58501929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
ENSMUST00000027215.12	chr1	-	1272	8	FSM	ENSMUSG00000026049.12	ENSMUST00000027215.12	1272	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	186.541782812039	3670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCCTTTGTTTTACTCT	NA	False	NA	0	True	ATTAAA	-20	NA	44141551	44125772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44140626_44140683_44141059_44141118_44141487
ENSMUST00000027217.9	chr1	+	902	4	FSM	ENSMUSG00000026051.9	ENSMUST00000027217.9	902	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	0.816496580927726	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCAGAATTCACTTGGGA	NA	False	NA	NA	False	AATAAA	-22	NA	43769761	43781738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_43770124_43776359_43776408_43777719_43777878_43781404
ENSMUST00000027256.12	chr1	+	969	6	FSM	ENSMUSG00000026087.12	ENSMUST00000027256.12	969	6	0	0	0	0	multi-exon	FALSE	canonical	3	545	junction_1	191.904559612324	8951	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGTAGTCAGTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	37929557	37937616	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_37929666_37932023_37932105_37933019_37933097_37934410_37934492_37936768_37936916_37937141
ENSMUST00000027257.10	chr1	-	1231	7	FSM	ENSMUSG00000026088.16	ENSMUST00000027257.10	1231	7	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_5	18.2543754267908	1561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGATCCACTCACCTG	NA	False	NA	0	True	AATAAA	-19	NA	37929492	37917968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_37918445_37918640_37918702_37920013_37920130_37920779_37920867_37921642_37921780_37924295_37924398_37929240
ENSMUST00000027264.10	chr1	-	2442	6	FSM	ENSMUSG00000026095.16	ENSMUST00000027264.10	2442	6	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_1	45.94344349306	1606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTGTTAATTTTTACCT	NA	False	NA	-2	True	AATAAA	-41	NA	53391911	53383775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_53384139_53385738_53385921_53386173_53387718_53389145_53389222_53390038_53390093_53391688
ENSMUST00000027266.4	chr1	+	1910	4	FSM	ENSMUSG00000026097.10	ENSMUST00000027266.4	1910	4	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_2	12.7104506432917	724	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTTCCTCTGTTTAA	NA	False	NA	93	True	TATAAA	-8	NA	53336253	53349468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_53336348_53338130_53338312_53344613_53344766_53347985
ENSMUST00000027267.14	chr1	-	3054	13	FSM	ENSMUSG00000026098.14	ENSMUST00000027267.14	3054	13	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_1	15.4495145554804	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTCACGTCCAACC	6052	False	NA	NA	False	AATAAA	-18	NA	53336177	53228345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_53228658_53231258_53231420_53234086_53234218_53235981_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53336044
ENSMUST00000027279.12	chr1	-	2838	6	FSM	ENSMUSG00000026107.12	ENSMUST00000027279.12	2838	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	8.25590697622012	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATATAGGAGTAACAGAACT	NA	False	NA	-1	True	AATAAA	-32	NA	51517558	51508646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51516983
ENSMUST00000027285.13	chr1	+	1414	6	FSM	ENSMUSG00000026111.16	ENSMUST00000027285.13	1414	6	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	129.498416978741	2612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTCAGCAAGCGGTAT	NA	False	NA	NA	False	AATGAA	-44	NA	37469250	37478205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_37469575_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
ENSMUST00000027286.7	chr1	-	3863	3	FSM	ENSMUSG00000026112.8	ENSMUST00000027286.7	3863	3	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_2	27.5	1604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTCTGTTTCAAGATTA	6272	False	NA	-3	True	NA	NA	NA	37469184	37456164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_37459709_37467422_37467507_37468949
ENSMUST00000027297.11	chr1	+	3279	8	FSM	ENSMUSG00000026123.12	ENSMUST00000027297.11	3279	8	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	21.365621823817	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTCTCATTGTGACTTC	NA	False	NA	18	True	ATTAAA	-18	NA	34889072	34918661	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_34889145_34900953_34900999_34902086_34902240_34902551_34902655_34903553_34903594_34905221_34905312_34908380_34908487_34915991
ENSMUST00000027312.11	chr1	-	1975	14	FSM	ENSMUSG00000026134.12	ENSMUST00000027312.11	1975	14	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_10	82.0868352460372	1359	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	NA	False	NA	-2	True	AATAAA	-18	NA	33708876	33492890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33701326_33701448_33702857_33702938_33706125_33706230_33707938_33708102_33708704
ENSMUST00000027338.4	chr1	-	683	3	FSM	ENSMUSG00000026154.5	ENSMUST00000027338.4	683	3	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_1	0.5	3056	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTATTATTTTATTTTTA	NA	False	NA	-1	True	AATAAA	-23	NA	24044737	24035019	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_24035442_24042237_24042388_24044626
ENSMUST00000027357.12	chr1	-	1479	10	FSM	ENSMUSG00000026171.13	ENSMUST00000027357.12	1479	10	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_3	8.63384096891663	1252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTATGTGGTATGACTCTT	NA	False	NA	NA	False	AATAAA	-30	NA	74640556	74632906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_74633562_74633718_74633854_74634367_74634461_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851_74637952_74638224_74638300_74640483
ENSMUST00000027358.11	chr1	+	1890	8	FSM	ENSMUSG00000026172.13	ENSMUST00000027358.11	1890	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	42.4562199476696	831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCTCTGCCTTCTGA	1142	False	NA	NA	False	NA	NA	NA	74627458	74631602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_74627647_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
ENSMUST00000027370.13	chr1	+	2937	10	FSM	ENSMUSG00000026179.15	ENSMUST00000027370.13	2937	10	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	408.826988068106	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAAGGTCTGAGCTCTCA	NA	False	NA	3	True	NA	NA	NA	74324203	74392843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_74324297_74325000_74325170_74386543_74386660_74386810_74386924_74387921_74387981_74388466_74388560_74388872_74389037_74389775_74389863_74390695_74390812_74390916
ENSMUST00000027379.10	chr1	+	2549	21	FSM	ENSMUSG00000026187.10	ENSMUST00000027379.10	2549	21	0	0	0	0	multi-exon	FALSE	canonical	3	464	junction_5	74.8852455427636	1547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTGTGTGAAGTCTCA	322	False	NA	22	True	TATAAA	-28	NA	72346585	72434111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
ENSMUST00000027381.13	chr1	-	1186	8	FSM	ENSMUSG00000026189.14	ENSMUST00000027381.13	1186	8	0	0	0	0	multi-exon	FALSE	canonical	1	70	junction_5	66.3254191429636	2172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTTATCTTTTAAGGATT	NA	False	NA	-6	True	AATAAA	-19	NA	72323473	72298330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_72298593_72301110_72301223_72306565_72306677_72309435_72309533_72314044_72314127_72315324_72315491_72316445_72316580_72323251
ENSMUST00000027384.6	chr1	+	2845	16	FSM	ENSMUSG00000026192.14	ENSMUST00000027384.6	2845	16	0	0	0	0	multi-exon	TRUE	canonical	3	576	junction_4	38.3577313661217	5381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTTCTGTGCTGGCTGA	NA	False	NA	15	True	AATAAA	-15	NA	71596308	71618790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71615959_71616944_71617101_71617710
ENSMUST00000027394.12	chr1	+	1316	9	FSM	ENSMUSG00000026197.13	ENSMUST00000027394.12	1316	9	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_8	17.9304210770411	1137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGAGTGCTGTTTCTT	2041	False	NA	12	True	AGTAAA	-18	NA	75145298	75148269	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
ENSMUST00000027396.15	chr1	-	2966	19	FSM	ENSMUSG00000026198.16	ENSMUST00000027396.15	2966	19	0	0	0	0	multi-exon	TRUE	canonical	3	123	junction_18	16.1765910736914	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCTGTGGTTTGGTTGTG	NA	False	NA	-2	True	AATAAA	-15	NA	75157036	75148360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_75148633_75148757_75148827_75148909_75149005_75149198_75149312_75149434_75149610_75150188_75150294_75150505_75150564_75150782_75150869_75150969_75151034_75151121_75151199_75151345_75151472_75151616_75151683_75152151_75152262_75152733_75152856_75153946_75154131_75154308_75154411_75154565_75154747_75155574_75155713_75156213
ENSMUST00000027432.9	chr1	+	3112	25	FSM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	0	0	0	0	multi-exon	FALSE	canonical	3	1352	junction_6	102.249660417801	3716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTCAATCCACACACCA	NA	False	NA	NA	False	NA	NA	NA	85992340	86066873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
ENSMUST00000027444.15	chr1	-	1159	5	FSM	ENSMUSG00000026239.15	ENSMUST00000027444.15	1159	5	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	25.5391855782443	1287	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTGGACTGTGACTCT	NA	False	NA	17	True	ATTAAA	-43	NA	86510269	86470715	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_86471306_86473423_86473530_86474378_86474505_86475250_86475340_86510021
ENSMUST00000027464.9	chr1	+	1424	4	FSM	ENSMUSG00000026248.10	ENSMUST00000027464.9	1424	4	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_2	2.44948974278318	829	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCTTTCCTTTCTTTAT	NA	False	NA	13	True	AATAAA	-15	NA	79753734	79759162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_79754029_79755574_79756044_79757204_79757384_79758680
ENSMUST00000027467.11	chr1	-	2210	9	FSM	ENSMUSG00000026249.11	ENSMUST00000027467.11	2210	9	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_4	6.12244844812923	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCGGGCGTGGTGGTGCAC	NA	False	NA	NA	False	TATAAA	-35	NA	79836413	79771913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_79772760_79774542_79774627_79777184_79777272_79779172_79779274_79780563_79780763_79788270_79788469_79794444_79794673_79798993_79799275_79836227
ENSMUST00000027472.7	chr1	+	1854	4	FSM	ENSMUSG00000026255.16	ENSMUST00000027472.7	1854	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	0.942809041582063	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCAGTGTGCCTTTTTGGT	1408	False	NA	NA	False	AATAAA	-25	NA	87192084	87238561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_87192477_87217189_87217338_87225350_87225486_87237382
ENSMUST00000027492.14	chr1	-	1366	4	FSM	ENSMUSG00000026273.14	ENSMUST00000027492.14	1366	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	7.36357401145817	881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGGAGTCTTTTTCTCT	NA	False	NA	1	True	AATAAA	-39	NA	93233637	93228926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_93229518_93230439_93230625_93232329_93232829_93233546
ENSMUST00000027499.13	chr1	+	1468	5	FSM	ENSMUSG00000026278.15	ENSMUST00000027499.13	1468	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	2.9474565306379	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAGACTCTACTCTGCT	NA	False	NA	6	True	AATAAA	-16	NA	93613381	93623486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_93613577_93614139_93614392_93616878_93617008_93621781_93621946_93622758
ENSMUST00000027503.14	chr1	-	1003	5	FSM	ENSMUSG00000026281.16	ENSMUST00000027503.14	1003	5	0	0	0	0	multi-exon	FALSE	canonical	3	1212	junction_3	505.005136112495	11652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGCTTTGGTTCTGCCCCT	2310	False	NA	-20	True	AATAAA	-24	NA	93729656	93720297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_93720666_93722447_93722646_93726101_93726193_93728523_93728633_93729419
ENSMUST00000027532.13	chr1	+	2202	12	FSM	ENSMUSG00000026307.13	ENSMUST00000027532.13	2202	12	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_11	10.6693350656825	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGAAGTGGCCTGGGC	NA	False	NA	15	True	ATTAAA	-24	NA	91226059	91248797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_91226171_91228249_91228363_91230490_91230592_91232995_91233177_91236035_91236164_91236372_91236538_91237518_91237626_91243210_91243248_91244785_91244870_91245313_91245414_91246759_91246836_91247798
ENSMUST00000027534.13	chr1	-	1368	12	FSM	ENSMUSG00000026309.15	ENSMUST00000027534.13	1368	12	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_9	38.9197096809944	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGAGTGACTGGTCC	NA	False	NA	-8	True	AATAAA	-18	NA	91326505	91303552	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316066_91316187_91318328_91318386_91318853_91318920_91326372
ENSMUST00000027579.17	chr1	-	2554	13	FSM	ENSMUSG00000026341.17	ENSMUST00000027579.17	2554	13	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_12	606.954190107366	2856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATGGTTTTTCTTCGTGC	NA	False	NA	-3	True	AATAAA	-21	NA	125363464	125320641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021_125363195_125363386
ENSMUST00000027580.11	chr1	+	2733	16	FSM	ENSMUSG00000026342.11	ENSMUST00000027580.11	2733	16	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	11.5808270669912	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGCTTAAGCGATGACAT	NA	False	NA	NA	False	TTTAAA	-41	NA	125488752	125523557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_125489022_125490011_125490103_125490236_125490379_125494204_125494349_125496283_125496347_125498283_125498366_125500049_125500241_125502402_125502485_125503908_125503997_125506999_125507065_125512189_125512295_125512810_125512971_125515101_125515193_125517547_125517703_125518769_125518867_125522649
ENSMUST00000027601.11	chr1	-	2910	17	FSM	ENSMUSG00000026355.12	ENSMUST00000027601.11	2910	17	0	0	0	0	multi-exon	FALSE	canonical	3	2842	junction_6	235.478734443261	2476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	-21	True	AATAAA	-17	NA	128287401	128259326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
ENSMUST00000027602.15	chr1	-	2175	16	FSM	ENSMUSG00000026356.16	ENSMUST00000027602.15	2175	16	0	0	0	0	multi-exon	FALSE	canonical	3	1712	junction_8	135.919976456737	5749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTGTGTGACTTT	NA	False	NA	-4	True	AATAAA	-14	NA	128345096	128291443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
ENSMUST00000027626.13	chr1	+	1889	7	FSM	ENSMUSG00000026377.13	ENSMUST00000027626.13	1889	7	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_6	29.1985539976821	1981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTGGGACTTTTTTTAA	NA	False	NA	6	True	NA	NA	NA	118249568	118261552	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_118249728_118251311_118251456_118255354_118255464_118257082_118257295_118258335_118258393_118260073_118260209_118260479
ENSMUST00000027634.13	chr1	-	569	4	FSM	ENSMUSG00000026385.17	ENSMUST00000027634.13	569	4	0	0	0	0	multi-exon	FALSE	canonical	3	2709	junction_1	24.2532930181083	22741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTGTTGTCTGGGTGCGT	NA	False	NA	-1	True	ATTAAA	-29	NA	120048808	120041009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_120041264_120044115_120044179_120047624_120047743_120048674
ENSMUST00000027655.8	chr1	+	2166	8	FSM	ENSMUSG00000026404.13	ENSMUST00000027655.8	2166	8	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	8.75750407085377	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTATTTATTTCAGTCCT	NA	False	NA	10	True	AATAAA	-16	NA	136343008	136367896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_136343162_136344319_136345135_136347147_136347316_136352532_136352623_136360049_136360302_136361450_136361604_136362243_136362373_136367490
ENSMUST00000027677.8	chr1	-	1823	6	Antisense	novelGene_ENSMUSG00000026421.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2828	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACACTGCACCACAACAGG	8865	False	NA	NA	False	NA	NA	NA	135679970	135656884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr1_-_135657013_135667137_135667251_135672996_135673166_135674457_135674588_135678302_135678397_135678781
ENSMUST00000027684.11	chr1	+	1713	7	FSM	ENSMUSG00000026426.11	ENSMUST00000027684.11	1713	7	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_3	43.3720980457354	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGTGTGTATGGTGCTGGT	NA	False	NA	15	True	AATAAA	-19	NA	135074561	135084007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_135074839_135080208_135080290_135080530_135080605_135081913_135082008_135082145_135082214_135082450_135082522_135082959
ENSMUST00000027687.8	chr1	+	1116	7	FSM	ENSMUSG00000026429.10	ENSMUST00000027687.8	1116	7	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_1	158.492902049272	3687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGTTTATATGAAACG	NA	False	NA	15	True	AATAAA	-17	NA	134890302	134901900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_134890525_134895464_134895637_134896978_134897049_134898987_134899094_134899638_134899738_134899843_134899928_134901537
ENSMUST00000027693.8	chr1	+	1226	6	FSM	ENSMUSG00000026433.14	ENSMUST00000027693.8	1226	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	27.6506781110337	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGGTTGTGATGCTGGG	NA	False	NA	15	True	ATTAAA	-17	NA	131794977	131800625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_131795149_131795256_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
ENSMUST00000027769.6	chr1	-	2449	8	FSM	ENSMUSG00000026492.12	ENSMUST00000027769.6	2449	8	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	6.92820323027551	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGTGTATATGTGTGT	7878	False	NA	NA	False	AATAAA	-15	NA	179373832	179355619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_179356920_179358868_179359030_179359629_179359693_179361197_179361288_179365263_179365413_179369871_179370023_179372462_179372552_179373386
ENSMUST00000027777.12	chr1	+	3873	23	FSM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	0	0	0	0	multi-exon	FALSE	canonical	3	1402	junction_6	226.960257925668	1193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCGTGTTGTGTGCCTCA	3147	False	NA	10	True	ATTAAA	-18	NA	180396493	180428819	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
ENSMUST00000027781.7	chr1	+	471	4	FSM	ENSMUSG00000026500.7	ENSMUST00000027781.7	471	4	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	43.5150037981793	4235	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTTTTACATGAAATCC	NA	False	NA	20	True	ATTAAA	-23	NA	178146694	178150258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_178146774_178149309_178149425_178149506_178149571_178150045
ENSMUST00000027792.6	chr1	+	1367	3	FSM	ENSMUSG00000026511.8	ENSMUST00000027792.6	1367	3	0	0	0	0	multi-exon	FALSE	canonical	3	1020	junction_2	65.5	10076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTATAGGTTTCTTT	NA	False	NA	26	True	AATAAA	-34	NA	181952314	181959972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_181952541_181956248_181956318_181958900
ENSMUST00000027802.9	chr1	+	1580	7	FSM	ENSMUSG00000026520.9	ENSMUST00000027802.9	1580	7	0	0	0	0	multi-exon	FALSE	canonical	3	1025	junction_3	51.6120679255884	3319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTAGTCTCACTGTGTAG	16	False	NA	32	True	NA	NA	NA	180731857	180735653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180732096_180732308_180732380_180733438_180733619_180733727_180733950_180734159_180734253_180734354_180734519_180735041
ENSMUST00000027846.8	chr1	+	2215	8	FSM	ENSMUSG00000026563.14	ENSMUST00000027846.8	2215	8	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_4	12.2357789173508	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTTCCTGTTTATTCAA	NA	False	NA	15	True	AATAAA	-15	NA	166206665	166221190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_166207046_166209695_166209788_166209965_166210032_166214234_166214333_166216130_166216341_166217404_166217557_166219391_166219555_166220136
ENSMUST00000027847.7	chr1	+	787	4	FSM	ENSMUSG00000000544.15	ENSMUST00000027847.7	787	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	86.0736119067085	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTTTTCTTTCTCGGTG	NA	False	NA	NA	False	AATAAA	-20	NA	165957985	165981705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165981478
ENSMUST00000027853.6	chr1	+	1025	5	FSM	ENSMUSG00000026568.7	ENSMUST00000027853.6	1025	5	0	0	0	0	multi-exon	FALSE	canonical	3	408	junction_4	28.8704000665041	3080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACCCCCCACTTCATCTT	NA	False	NA	107	True	AATAAA	-16	NA	165288605	165308783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_165289081_165302522_165302564_165305789_165305875_165307035_165307148_165308471
ENSMUST00000027867.7	chr1	+	1909	6	FSM	ENSMUSG00000026578.7	ENSMUST00000027867.7	1909	6	0	0	0	0	multi-exon	FALSE	canonical	2	28	junction_1	8.97552226892675	232	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGTGTCATCTTGTAG	NA	False	NA	20	True	AATAAA	-20	NA	164103153	164115416	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_164103331_164105742_164105884_164107435_164108384_164109959_164110107_164113809_164113965_164115075
ENSMUST00000027877.7	chr1	+	3946	20	FSM	ENSMUSG00000026585.14	ENSMUST00000027877.7	3946	20	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_2	20.2454468052323	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAACTCTCATTTTTATG	NA	False	NA	18	True	ATTAAA	-25	NA	163607151	163744678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_163607472_163610553_163610686_163621517_163621673_163623553_163623610_163624820_163624963_163641937_163642038_163643393_163643519_163645401_163645501_163653256_163653436_163656701_163656865_163676229_163676331_163683604_163683714_163685040_163685154_163689523_163689690_163690279_163690406_163693007_163693107_163696269_163696356_163710951_163711142_163715774_163715875_163743293
ENSMUST00000027897.8	chr1	-	1680	12	FSM	ENSMUSG00000026603.14	ENSMUST00000027897.8	1680	12	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_3	24.6985126865085	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGTTTCTGAATGTCT	NA	False	NA	-6	True	AATAAA	-17	NA	189654560	189612688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_189613064_189614305_189614415_189616020_189616196_189617495_189617617_189618717_189618829_189621011_189621115_189623596_189623665_189628767_189628893_189629619_189629681_189632014_189632126_189642047_189642112_189654303
ENSMUST00000027940.6	chr1	+	2246	8	FSM	ENSMUSG00000026627.8	ENSMUST00000027940.6	2246	8	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_7	21.6248156769306	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCCTGCTACCTTTGTCT	NA	False	NA	6	True	AATAAA	-15	NA	191058108	191083111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_191058274_191060379_191060477_191070978_191071189_191072923_191073076_191077173_191077317_191078956_191079102_191080564_191080673_191081885
ENSMUST00000027941.14	chr1	-	1984	4	FSM	ENSMUSG00000026628.14	ENSMUST00000027941.14	1984	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_2	6.37704215656966	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTAGTGTGGCACTGGTTT	NA	False	NA	0	True	AATAAA	-23	NA	190915537	190902492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_190903877_190904571_190904680_190909427_190909672_190915289
ENSMUST00000027943.6	chr1	+	801	3	FSM	ENSMUSG00000026630.10	ENSMUST00000027943.6	801	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	4.5	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTTCCTTTGTCCATCT	NA	False	NA	NA	False	AATAAA	-12	NA	190830521	190841140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_190830725_190832924_190833030_190840647
ENSMUST00000027945.6	chr1	-	1196	10	FSM	ENSMUSG00000026632.18	ENSMUST00000027945.6	1196	10	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_3	9.99011857466179	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTATTTTTAAAAAAGGAA	NA	False	NA	-4	True	TATAAA	-16	NA	190795102	190778038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_190778518_190781478_190781557_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
ENSMUST00000027961.12	chr2	-	1795	14	FSM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_5	73.9537677425134	4483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGAGTCTTTGTTTTCTT	3942	False	NA	-5	True	ATTAAA	-20	NA	3513851	3489886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
ENSMUST00000027965.11	chr2	+	3156	4	FSM	ENSMUSG00000026655.16	ENSMUST00000027965.11	3156	4	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	8.49836585598797	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATGTTTGTCTCGTTTGT	944	False	NA	19	True	AATAAA	-25	NA	3714494	3783179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_3714674_3773832_3774017_3779454_3779606_3780537
ENSMUST00000027970.14	chr1	-	1374	6	FSM	ENSMUSG00000026659.14	ENSMUST00000027970.14	1374	6	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_3	62.7917191992702	1313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTGTGTTAGATGGTTT	NA	False	NA	-2	True	ATTAAA	-16	NA	170713109	170701756	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708598_170712635
ENSMUST00000027975.8	chr2	+	1438	9	FSM	ENSMUSG00000026664.8	ENSMUST00000027975.8	1438	9	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_4	31.960669188864	3569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCATATTAAGTCAATTTCT	991	False	NA	9	True	AATAAA	-20	NA	4923829	4943541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_4923956_4927638_4927698_4930408_4930520_4932160_4932330_4933481_4933564_4935523_4935706_4940779_4940930_4942486_4942622_4943117
ENSMUST00000027980.8	chr2	-	3494	20	FSM	ENSMUSG00000026669.15	ENSMUST00000027980.8	3494	20	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_19	72.612354435182	218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	0	True	AATAAA	-38	NA	5017602	4995534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
ENSMUST00000028000.13	chr1	-	2068	15	FSM	ENSMUSG00000026683.15	ENSMUST00000028000.13	2068	15	0	0	0	0	multi-exon	TRUE	canonical	3	87	junction_14	29.0531708199618	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTTATCCAGGATGTT	NA	False	NA	-9	True	AATAAA	-26	NA	169358997	169325879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_169326490_169332033_169332170_169333550_169333727_169334812_169334954_169337968_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169356304_169356381_169358890
ENSMUST00000028059.9	chr2	-	1546	9	FSM	ENSMUSG00000026727.11	ENSMUST00000028059.9	1546	9	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_5	20.3588893361106	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCACACGTTTCTTCTTG	7043	False	NA	-7	True	AATAAA	-12	NA	13276226	13081822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555_13246607_13275721_13275834_13276010
ENSMUST00000028105.13	chr2	-	2344	15	FSM	ENSMUSG00000026767.13	ENSMUST00000028105.13	2344	15	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_11	25.5990473355904	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	12424281	12352073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12423969
ENSMUST00000028139.11	chr2	+	1254	8	FSM	ENSMUSG00000026799.16	ENSMUST00000028139.11	1254	8	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_3	14.0393034305954	1056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGTGTTCTGCTTCTT	NA	False	NA	32	True	AATAAA	-20	NA	29236830	29414805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29237060_29239857_29240003_29303399_29303531_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
ENSMUST00000028148.11	chr2	-	2273	15	FSM	ENSMUSG00000009566.13	ENSMUST00000028148.11	2273	15	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_8	41.2442327446381	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTATTCTCCTAGCTCCC	NA	False	NA	-13	True	AATAAA	-20	NA	32584197	32572620	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_32573481_32574761_32574829_32575325_32575402_32575730_32575882_32576565_32576656_32576749_32576898_32577156_32577235_32577424_32577528_32577613_32577676_32577771_32577850_32577931_32578047_32581201_32581267_32582462_32582517_32582604_32582734_32584000
ENSMUST00000028151.7	chr2	+	869	4	FSM	ENSMUSG00000026810.13	ENSMUST00000028151.7	869	4	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	58.5965490072202	2151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCATCCTTGCTCTG	4773	False	NA	23	True	AATAAA	-24	NA	32460869	32463591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_32460925_32461217_32461308_32462308_32462412_32462970
ENSMUST00000028199.12	chr2	+	3039	5	FSM	ENSMUSG00000026848.15	ENSMUST00000028199.12	3039	5	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_2	34.4990941910074	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTGAGCTTTTCCTTG	NA	False	NA	13	True	AATAAA	-18	NA	30842970	30849027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_30843236_30843763_30844030_30845789_30845966_30846459_30846588_30846823
ENSMUST00000028200.9	chr2	-	1401	5	FSM	ENSMUSG00000026849.19	ENSMUST00000028200.9	1401	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	220.841996685413	2159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGTGGCTTTGTGTGTCTT	NA	False	NA	-8	True	TTTAAA	-30	NA	30857945	30850638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_30851210_30853486_30853615_30853705_30853882_30857101_30857368_30857685
ENSMUST00000028214.15	chr2	-	1810	11	FSM	ENSMUSG00000026860.17	ENSMUST00000028214.15	1810	11	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_5	55.8	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGATCTCAGTCCATGAG	NA	False	NA	-10	True	AATAAA	-16	NA	30249328	30234820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ENSMUST00000028238.15	chr2	-	3081	8	FSM	ENSMUSG00000026878.18	ENSMUST00000028238.15	3081	8	0	0	0	0	multi-exon	FALSE	canonical	3	853	junction_1	102.482054178141	975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGCATTATTTTTGA	9552	False	NA	NA	False	AATAAA	-26	NA	35091132	35070216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
ENSMUST00000028241.7	chr2	-	2787	7	FSM	ENSMUSG00000026880.12	ENSMUST00000028241.7	2787	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	5.5876848714134	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGTGAGTCTTGTTTCT	NA	False	NA	0	True	AATAAA	-20	NA	35226988	35203997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_35206068_35210342_35210478_35211494_35211699_35213675_35213759_35215325_35215399_35216432_35216537_35226870
ENSMUST00000028251.10	chr2	-	2617	6	FSM	ENSMUSG00000026889.13	ENSMUST00000028251.10	2617	6	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_3	16.6300932047899	1190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTGGTCTTATTGTCT	NA	False	NA	-23	True	AATAAA	-16	NA	36026785	36006090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_36007987_36010824_36010911_36012863_36012951_36017136_36017264_36024146_36024276_36026493
ENSMUST00000028257.3	chr2	+	3330	8	FSM	ENSMUSG00000026893.5	ENSMUST00000028257.3	3330	8	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_6	22.3332825667003	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCTCCAATTCCCAGACT	NA	False	NA	NA	False	TTTAAA	-18	NA	62494628	62524453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_62494804_62502620_62502795_62509499_62509570_62516308_62516353_62516620_62516769_62520304_62520419_62520734_62520794_62521907
ENSMUST00000028278.14	chr2	+	1541	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	0	0	0	0	multi-exon	FALSE	canonical	3	1717	junction_5	150.997564426748	15761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8547	False	NA	31	True	AATAAA	-17	NA	61542037	61630720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
ENSMUST00000028286.12	chr2	-	1489	6	FSM	ENSMUSG00000026922.14	ENSMUST00000028286.12	1489	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	292.487674954006	1815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAGAGTTCTTTCTCC	9481	False	NA	1	True	TATAAA	-45	NA	26494344	26483068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494040
ENSMUST00000028332.8	chr2	-	1682	13	FSM	ENSMUSG00000026958.14	ENSMUST00000028332.8	1682	13	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_10	27.0014145719977	1289	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCTAGTAGGATCCATG	9001	False	NA	-17	True	AATAAA	-17	NA	25246371	25242301	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25242579_25242697_25242769_25243164_25243230_25243371_25243529_25243619_25243739_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
ENSMUST00000028336.7	chr2	+	2548	4	FSM	ENSMUSG00000026960.7	ENSMUST00000028336.7	2548	4	0	0	0	0	multi-exon	FALSE	canonical	3	497	junction_2	8.2192186706253	1744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTGTGTAATGGCAAGG	NA	False	NA	24	True	ATTAAA	-17	NA	53082099	53109232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_53082535_53084295_53084350_53092930_53093064_53107306
ENSMUST00000028342.7	chr2	-	862	3	FSM	ENSMUSG00000026966.7	ENSMUST00000028342.7	862	3	0	0	0	0	multi-exon	FALSE	canonical	3	707	junction_2	68	5709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCTGCTAGCTACCA	NA	False	NA	-6	True	AATAAA	-16	NA	25162428	25161050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25161594_25161940_25162141_25162309
ENSMUST00000028349.14	chr2	-	1666	8	FSM	ENSMUSG00000026972.16	ENSMUST00000028349.14	1666	8	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	7.55658923167897	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCGAGTGGCTGGCCT	9317	False	NA	-31	True	AATAAA	-17	NA	24825264	24815363	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_24815689_24815767_24816207_24816283_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
ENSMUST00000028351.9	chr2	+	1666	9	FSM	ENSMUSG00000026975.11	ENSMUST00000028351.9	1666	9	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	22.9945645751338	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852411	24862175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_24852638_24853034_24853169_24853467_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ENSMUST00000028368.14	chr2	-	2072	11	FSM	ENSMUSG00000026988.16	ENSMUST00000028368.14	2072	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_10	21.0228447171167	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712928	59682707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712744
ENSMUST00000028382.13	chr2	+	1559	9	FSM	ENSMUSG00000026999.15	ENSMUST00000028382.13	1559	9	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_4	57.0169930810105	1491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACATTTGTTTGGAAGGT	NA	False	NA	12	True	AATAAA	-21	NA	80469159	80489246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_80469277_80472968_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80485136_80485207_80486292_80486422_80487532_80487698_80488664
ENSMUST00000028408.3	chr2	+	1576	11	FSM	ENSMUSG00000027018.12	ENSMUST00000028408.3	1576	11	0	0	0	0	multi-exon	FALSE	canonical	3	1873	junction_8	150.054156890104	32332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAACTTTGCATTTGAGTT	5118	False	NA	59	True	GATAAA	-16	NA	71219603	71271966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
ENSMUST00000028430.6	chr2	-	655	4	FSM	ENSMUSG00000056436.5	ENSMUST00000028430.6	655	4	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_3	45.146674542232	2693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCGTTATGTTTATGA	NA	False	NA	1	True	AATAAA	-30	NA	76190794	76184285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_76184581_76186423_76186617_76187916_76187946_76190656
ENSMUST00000028470.10	chr2	+	690	3	FSM	ENSMUSG00000027076.11	ENSMUST00000028470.10	690	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_1	17.5	8046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGTGTCTTTACTTGAGA	6417	False	NA	10	True	ATTAAA	-15	NA	84657340	84660557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_84657492_84657942_84658058_84660133
ENSMUST00000028471.6	chr2	-	1761	8	FSM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	63.4909603078763	1584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	NA	False	NA	-19	True	AATAAA	-19	NA	84652996	84641519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227_84646384_84647321_84647368_84647467_84647601_84648619_84649255_84652836
ENSMUST00000028475.9	chr2	-	1912	3	FSM	ENSMUSG00000027079.16	ENSMUST00000028475.9	1912	3	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	30.5	1670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTATGATTCTTTTTTT	NA	False	NA	-21	True	AATAAA	-17	NA	84557694	84553465	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84554562_84555872_84556501_84557506
ENSMUST00000028487.10	chr2	-	1492	9	FSM	ENSMUSG00000027082.16	ENSMUST00000028487.10	1492	9	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_8	57.5972004527998	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATCATGTTGACTGTCC	NA	False	NA	-7	True	AATAAA	-14	NA	84304518	84263203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84304286
ENSMUST00000028509.11	chr2	+	2238	10	FSM	ENSMUSG00000014959.13	ENSMUST00000028509.11	2238	10	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_9	56.2121203045731	926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGCGTGTACTTCATGTGT	NA	False	NA	38	True	AATAAA	-38	NA	70491919	70522087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526_70519647_70521001
ENSMUST00000028517.13	chr2	-	2175	11	FSM	ENSMUSG00000027108.16	ENSMUST00000028517.13	2175	11	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_4	35.4120036145937	4120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTCGTTTCTAAGGGGT	NA	False	NA	-13	True	ATTAAA	-14	NA	73044791	72923144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
ENSMUST00000028527.8	chr2	+	3369	17	FSM	ENSMUSG00000027115.15	ENSMUST00000028527.8	3369	17	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_13	41.1567126967157	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTTGGTTTTCCTGTTTT	1376	False	NA	25	True	ATTAAA	-16	NA	109111082	109172092	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194_109137360_109140891_109141014_109148219_109148456_109163600_109164013_109164665_109164774_109168911_109169022_109171502
ENSMUST00000028536.13	chr2	-	3337	5	FSM	ENSMUSG00000027122.16	ENSMUST00000028536.13	3337	5	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	43.6863823176056	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGACTTACTGTTTATTA	NA	False	NA	NA	False	AATAAA	-19	NA	106804769	106792871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804616
ENSMUST00000028551.4	chr2	-	983	5	FSM	ENSMUSG00000027131.4	ENSMUST00000028551.4	983	5	0	0	0	0	multi-exon	FALSE	canonical	3	778	junction_3	24.5395089600424	6933	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAAGTTCCCCTTCAGT	4997	False	NA	-5	True	AATAAA	-29	NA	112198372	112193355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_112193700_112194136_112194298_112194496_112194651_112197746_112197862_112198163
ENSMUST00000028552.4	chr2	+	2886	10	FSM	ENSMUSG00000027132.4	ENSMUST00000028552.4	2886	10	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_7	47.4201082523719	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTGTGCATAGTTT	NA	False	NA	10	True	AATAAA	-20	NA	112209555	112244585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418_112236699_112237930_112238050_112238727_112238779_112238868_112238959_112239485_112239576_112240487_112240582_112242727
ENSMUST00000028553.4	chr2	+	1109	2	FSM	ENSMUSG00000027133.4	ENSMUST00000028553.4	1109	2	0	0	0	0	multi-exon	FALSE	canonical	3	3938	junction_1	0	15610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTCTGGTAGGAGATAT	NA	False	NA	NA	False	NA	NA	NA	112092270	112093614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_112092423_112092657
ENSMUST00000028580.12	chr2	+	2070	6	FSM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	0	0	0	0	multi-exon	FALSE	canonical	3	423	junction_3	38.5455574612691	2127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATCACCATTTTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	109848161	109875661	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_109848560_109852226_109852360_109862676_109862785_109870918_109871078_109871605_109871748_109874531
ENSMUST00000028583.8	chr2	+	4228	5	FSM	ENSMUSG00000027162.8	ENSMUST00000028583.8	4228	5	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_4	22.349496638627	1013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGGGGTAATGTGGTTG	NA	False	NA	31	True	AGTAAA	-21	NA	109721197	109731348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580_109726791_109727590
ENSMUST00000028584.8	chr2	+	1191	6	FSM	ENSMUSG00000027163.14	ENSMUST00000028584.8	1191	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	9.72830920561225	908	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGCTGGTCGTGGTTCTT	NA	False	NA	29	True	AATAAA	-25	NA	101716597	101731991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_101716665_101725479_101725606_101727384_101727525_101729212_101729248_101730213_101730318_101731272
ENSMUST00000028592.12	chr2	+	1283	11	NIC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	7466	-771	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	6263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTCAGCCACAGAGGGCGG	8631	False	NA	NA	False	NA	NA	NA	104830000	104847425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_+_104830187_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
ENSMUST00000028595.8	chr2	-	1801	9	FSM	ENSMUSG00000027173.8	ENSMUST00000028595.8	1801	9	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_7	14.7394029729837	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTACTCAGAATGGTGTG	NA	False	NA	-9	True	AATAAA	-24	NA	104573223	104552128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_104552464_104553220_104553300_104553383_104553510_104553652_104553796_104554914_104555127_104557466_104557657_104558427_104558556_104560528_104560920_104573026
ENSMUST00000028599.8	chr2	+	2817	21	FSM	ENSMUSG00000027176.9	ENSMUST00000028599.8	2817	21	0	0	0	0	multi-exon	TRUE	canonical	3	179	junction_7	45.0891062231222	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCCTGTTTCTTTGTATG	6900	False	NA	19	True	AATAAA	-20	NA	104420867	104495774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_104421048_104439215_104439318_104439435_104439532_104474633_104474667_104475323_104475422_104476744_104476812_104476953_104476989_104477068_104477196_104478514_104478593_104479797_104479961_104481986_104482097_104482789_104482907_104483348_104483424_104484505_104484650_104486033_104486137_104489610_104489681_104490863_104491060_104493638_104493793_104494413_104494509_104494641_104494703_104495061
ENSMUST00000028617.7	chr2	-	3736	14	FSM	ENSMUSG00000027193.13	ENSMUST00000028617.7	3736	14	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_1	163.356364354585	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGATATTAGCATTTATT	NA	False	NA	44	True	NA	NA	NA	94268481	94242026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_94244127_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
ENSMUST00000028619.5	chr2	-	1902	11	FSM	ENSMUSG00000027195.11	ENSMUST00000028619.5	1902	11	0	0	0	0	multi-exon	TRUE	canonical	3	670	junction_5	45.0653969249135	2482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATTTTTGATAGTGGAA	NA	False	NA	NA	False	AATAAA	-31	NA	93988309	93863033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988054
ENSMUST00000028623.13	chr2	-	2871	14	FSM	ENSMUSG00000027198.17	ENSMUST00000028623.13	2871	14	0	0	0	0	multi-exon	TRUE	canonical	3	390	junction_9	31.3157237855525	301	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTCTAGAATGCTGGT	NA	False	NA	-11	True	ATTAAA	-19	NA	93652913	93525975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93652731
ENSMUST00000028635.6	chr2	-	2073	13	FSM	ENSMUSG00000027206.14	ENSMUST00000028635.6	2073	13	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_9	116.017838666685	1232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTTGGTTCTTGATGTG	NA	False	NA	NA	False	AATAAA	-19	NA	125701059	125673521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125686729_125686856_125690126_125690205_125691659_125691774_125700855
ENSMUST00000028640.14	chr2	-	2632	8	FSM	ENSMUSG00000057147.14	ENSMUST00000028640.14	2632	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	75.5804747488748	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTGTGAATGTCAGTT	NA	False	NA	-2	True	NA	NA	NA	114485434	114346896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_114348774_114350192_114350281_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
ENSMUST00000028644.11	chr2	-	1824	10	FSM	ENSMUSG00000027215.14	ENSMUST00000028644.11	1824	10	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_8	1.4229164972073	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGTCTGAAGAGGCGGTA	NA	False	NA	NA	False	ATTAAA	-17	NA	93292847	93249455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205_93264279_93267732_93267816_93273713_93273790_93292674
ENSMUST00000028650.9	chr2	+	1392	11	FSM	ENSMUSG00000027222.15	ENSMUST00000028650.9	1392	11	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	17.2869893272368	1148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGTGGCTCTGTGTCATC	NA	False	NA	21	True	AATAAA	-21	NA	92205650	92211562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_92206021_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
ENSMUST00000028661.6	chr2	+	2115	7	FSM	ENSMUSG00000027229.6	ENSMUST00000028661.6	2115	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	42.3910367884533	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	1945	False	NA	NA	False	AATAAA	-15	NA	122016752	122036878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_122016834_122016944_122017027_122018390_122018531_122021087_122021150_122023712_122023787_122028866_122028956_122035291
ENSMUST00000028672.13	chr2	-	1054	5	FSM	ENSMUSG00000027239.15	ENSMUST00000028672.13	1054	5	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	1100.19691419309	3151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762642	91760172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91762274
ENSMUST00000028677.5	chr2	+	425	3	FSM	ENSMUSG00000027245.12	ENSMUST00000028677.5	425	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2285	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCAGTTTCTATGTTGG	NA	False	NA	-61	True	NA	NA	NA	121287614	121288844	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_121287773_121288472_121288525_121288629
ENSMUST00000028694.12	chr2	+	1862	11	FSM	ENSMUSG00000027257.14	ENSMUST00000028694.12	1862	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	20.1345474247622	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGCGTCTTTTGATAGC	4750	False	NA	19	True	AATAAA	-16	NA	91087157	91095023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_91087272_91090208_91090273_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
ENSMUST00000028743.10	chr2	+	2658	8	FSM	ENSMUSG00000027287.15	ENSMUST00000028743.10	2658	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	118.449334729914	1361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGACCAGTAATGCCC	NA	False	NA	10	True	NA	NA	NA	120398171	120431736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_120398243_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
ENSMUST00000028768.2	chr2	-	1451	5	FSM	ENSMUSG00000027305.10	ENSMUST00000028768.2	1451	5	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	75.083287088406	1926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTACCCTCAGCCTTTTTC	NA	False	NA	-6	True	AATAAA	-16	NA	119493279	119485931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493089
ENSMUST00000028780.4	chr2	+	1637	3	FSM	ENSMUSG00000027313.4	ENSMUST00000028780.4	1637	3	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_2	33	1216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAAGTAGGGAAAGCCTC	7152	False	NA	81	True	GATAAA	-13	NA	119181709	119184862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_119182118_119182837_119182874_119183669
ENSMUST00000028783.14	chr2	+	2273	11	FSM	ENSMUSG00000027315.14	ENSMUST00000028783.14	2273	11	0	0	0	0	multi-exon	TRUE	canonical	3	163	junction_1	46.3102580429002	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTTTGTTGAGCTC	NA	False	NA	13	True	AATAAA	-1	NA	119067842	119079995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_119067954_119068181_119068725_119075635_119075764_119075990_119076130_119076217_119076389_119076540_119076568_119076839_119076966_119077077_119077129_119078491_119078663_119078836_119078885_119079237
ENSMUST00000028800.12	chr2	-	832	6	FSM	ENSMUSG00000027327.17	ENSMUST00000028800.12	832	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	282.042124513343	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCTGTGTGACGGTGTG	NA	False	NA	NA	False	NA	NA	NA	131002001	130988723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130993537_130993681_130995504_130995631_131001872
ENSMUST00000028804.15	chr2	+	3089	16	FSM	ENSMUSG00000027330.17	ENSMUST00000028804.15	3089	16	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_7	16.6951756171922	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATCTGTTTGTTATGCA	NA	False	NA	NA	False	AATAAA	-16	NA	131028868	131040415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_131029301_131030025_131030148_131030998_131031051_131033064_131033107_131033269_131033307_131033515_131033642_131033732_131033856_131034476_131034609_131034987_131035069_131035158_131035333_131035514_131035608_131036034_131036098_131036258_131036358_131036545_131036680_131038896_131039009_131039148
ENSMUST00000028806.12	chr2	+	2270	7	FSM	ENSMUSG00000027333.19	ENSMUST00000028806.12	2270	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_6	10.8269211792745	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTCAGTTCAAAGGCTC	NA	False	NA	31	True	AATAAA	-32	NA	131333683	131367103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131363978_131364140_131366662
ENSMUST00000028816.9	chr2	-	1612	4	FSM	ENSMUSG00000027341.11	ENSMUST00000028816.9	1612	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_2	26.7332502076846	2749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	4870	False	NA	-2	True	TATAAA	-20	NA	132089727	132081411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089492
ENSMUST00000028817.7	chr2	-	1518	6	FSM	ENSMUSG00000027342.15	ENSMUST00000028817.7	1518	6	0	0	0	0	multi-exon	FALSE	canonical	3	1968	junction_1	234.222629137323	17306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGTTGTGCAAAGTTTTC	8225	False	NA	-10	True	AATAAA	-27	NA	132095234	132091081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093679_132093822_132093921_132094735
ENSMUST00000028820.7	chr2	-	1025	6	FSM	ENSMUSG00000027344.15	ENSMUST00000028820.7	1025	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	2.68328157299975	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTCGGTTTTGTGTATA	NA	False	NA	NA	False	AATAAA	-21	NA	118087437	118075144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_118075447_118078775_118078873_118080286_118080442_118082119_118082301_118083766_118083900_118087280
ENSMUST00000028821.10	chr2	-	1673	11	FSM	ENSMUSG00000027344.15	ENSMUST00000028821.10	1673	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.92574776766556	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACCTGGCTTTATTGTCT	NA	False	NA	NA	False	NA	NA	NA	118087447	118035368	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_118035656_118052806_118052942_118063384_118063541_118067394_118067506_118070872_118071031_118072123_118072217_118078775_118078873_118080286_118080442_118082119_118082301_118083766_118083900_118087280
ENSMUST00000028831.15	chr2	+	3179	19	FSM	ENSMUSG00000027353.15	ENSMUST00000028831.15	3179	19	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	21.8867032185704	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTGTTCAGGTCACAAAA	NA	False	NA	2	True	ATTAAA	-14	NA	132658060	132685815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_132658386_132658993_132659166_132659624_132659709_132661522_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132673567_132673599_132674682_132674824_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
ENSMUST00000028841.14	chr2	+	4145	19	FSM	ENSMUSG00000027363.16	ENSMUST00000028841.14	4145	19	0	0	0	0	multi-exon	TRUE	canonical	3	323	junction_9	42.2163738639668	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTGAAACCTTGTACAT	3576	False	NA	6	True	ATTAAA	-20	NA	126549262	126601217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598036_126600039_126600173_126600340
ENSMUST00000028848.4	chr2	-	1211	8	FSM	ENSMUSG00000027371.11	ENSMUST00000028848.4	1211	8	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_6	10.321366781822	727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGCTTCCACTGTCTTT	NA	False	NA	-4	True	AATAAA	-19	NA	127286470	127278134	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_127278327_127278465_127278554_127278656_127278766_127280032_127280193_127280429_127280490_127282305_127282523_127283793_127284045_127286336
ENSMUST00000028856.3	chr2	-	2006	4	FSM	ENSMUSG00000027377.3	ENSMUST00000028856.3	2006	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	4.54606056566195	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGAGTCTATCGCTTTG	NA	False	NA	2	True	AATAAA	-21	NA	127571852	127546305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_127547844_127550756_127550880_127554188_127554357_127571675
ENSMUST00000028858.8	chr2	-	3421	25	FSM	ENSMUSG00000027379.15	ENSMUST00000028858.9	3418	25	0	-3	0	3	multi-exon	TRUE	canonical	0	0	junction_18	145.15221297161	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGACCTAGTTGTTCTAA	NA	False	NA	-5	True	AATAAA	-18	NA	127673785	127643041	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663780_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
ENSMUST00000028866.9	chr2	-	1624	9	FSM	ENSMUSG00000027387.12	ENSMUST00000028866.9	1624	9	0	0	0	0	multi-exon	FALSE	canonical	2	159	junction_3	33.6115214621415	1314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTTCATACTTGATT	NA	False	NA	1	True	AATAAA	-22	NA	128785997	128768187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_128768732_128770806_128770849_128771766_128771877_128772711_128772824_128773197_128773321_128775118_128775253_128777231_128777467_128781762_128781857_128785767
ENSMUST00000028880.10	chr2	+	3316	11	FSM	ENSMUSG00000027397.15	ENSMUST00000028880.10	3316	11	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_5	146.125973050652	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTGTGCTTTTTGTTT	NA	False	NA	22	True	AATAAA	-24	NA	129040683	129053536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
ENSMUST00000028892.11	chr2	-	1616	12	FSM	ENSMUSG00000027406.14	ENSMUST00000028892.11	1616	12	0	0	0	0	multi-exon	FALSE	canonical	3	745	junction_6	49.1089192551946	5293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTTTGTGTTTTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	130126467	130121228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
ENSMUST00000028897.8	chr2	-	2366	14	FSM	ENSMUSG00000027408.8	ENSMUST00000028897.8	2366	14	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_8	18.681383322448	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTCTTGAGTTCCTATTC	NA	False	NA	-3	True	ATTAAA	-19	NA	130239494	130232694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_130233063_130233157_130233261_130234990_130235131_130235303_130235602_130235685_130235866_130235951_130236149_130236229_130236354_130236656_130236746_130236841_130236993_130237555_130237644_130237748_130237889_130238027_130238138_130238250_130238413_130239278
ENSMUST00000028909.5	chr2	-	2419	13	FSM	ENSMUSG00000027423.16	ENSMUST00000028909.5	2419	13	0	0	0	0	multi-exon	FALSE	canonical	3	1195	junction_10	117.133352305064	1692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTTCTGACTGTTTT	NA	False	NA	NA	False	AAGAAA	-16	NA	144112492	144092042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296
ENSMUST00000028915.6	chr2	-	2170	5	FSM	ENSMUSG00000027428.10	ENSMUST00000028915.6	2170	5	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	20.0873094266007	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTGACTGCTGTGGTGC	NA	False	NA	-9	True	AATAAA	-20	NA	144392789	144384184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_144385930_144386293_144386380_144389913_144390020_144391023_144391067_144392599
ENSMUST00000028916.15	chr2	+	2779	20	FSM	ENSMUSG00000027429.17	ENSMUST00000028916.15	2779	20	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	107.06740569791	1058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGATTTTGTCTCATTTT	NA	False	NA	NA	False	AATAAA	-37	NA	144398175	144432669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_144398263_144401126_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
ENSMUST00000028917.7	chr2	+	1350	6	FSM	ENSMUSG00000027430.13	ENSMUST00000028917.7	1350	6	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_5	10.373041983912	1258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTTTTCTGTAGAAATG	NA	False	NA	NA	False	ATTAAA	-20	NA	144441816	144610678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_144442012_144445707_144445799_144459111_144459348_144477677_144477785_144588820_144588994_144610130
ENSMUST00000028921.6	chr2	+	3434	30	FSM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	0	0	0	0	multi-exon	FALSE	canonical	3	956	junction_9	74.1082057489866	1795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTGTCTGGTGTCTGA	NA	False	NA	10	True	AATAAA	-22	NA	146854915	146919920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
ENSMUST00000028938.7	chr2	-	860	3	FSM	ENSMUSG00000027447.7	ENSMUST00000028938.7	860	3	0	0	0	0	multi-exon	FALSE	canonical	3	2071	junction_1	68	29946	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTGAGTTGTTTCTGT	NA	False	NA	-6	True	ATTAAA	-20	NA	148717496	148713641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_148713964_148714736_148714851_148717072
ENSMUST00000028948.5	chr2	+	1087	7	FSM	ENSMUSG00000027454.11	ENSMUST00000028948.5	1087	7	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_1	28.3058690419888	2384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAATCTCCTGGTAGCTT	2422	False	NA	23	True	AATAAA	-30	NA	150751513	150773200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767801_150767919_150769961_150770037_150772760
ENSMUST00000028949.16	chr2	-	1364	9	Antisense	novelGene_ENSMUSG00000027455.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCAAACCGCTCCGGCGG	NA	False	NA	NA	False	NA	NA	NA	151353225	151336212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr2_-_151336333_151338503_151338602_151342634_151342710_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
ENSMUST00000028950.9	chr2	+	1399	9	FSM	ENSMUSG00000027456.9	ENSMUST00000028950.9	1399	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	9.20258115965298	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCGGTCATGAAAGTTCC	NA	False	NA	19	True	AATAAA	-19	NA	151414541	151431925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_151414625_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
ENSMUST00000028964.14	chr2	-	2252	13	FSM	ENSMUSG00000027466.16	ENSMUST00000028964.14	2252	13	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_12	150.053231295505	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152174573	152158253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953_152174043_152174415
ENSMUST00000028990.10	chr2	-	1970	14	FSM	ENSMUSG00000027487.12	ENSMUST00000028990.10	1970	14	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_3	9.02265393460642	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCTTCCTTGTCTACTT	5680	False	NA	-15	True	AATAAA	-12	NA	154214639	154177305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214600
ENSMUST00000028997.8	chr2	-	1905	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109139.8	1905	9	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_8	405.788969169937	6763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGAGTACGTGGGTAATC	NA	False	NA	-8	True	AATATA	-16	NA	172212426	172198115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212314
ENSMUST00000029005.4	chr2	+	2173	9	FSM	ENSMUSG00000027502.12	ENSMUST00000029005.4	2173	9	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_4	19.7416912902618	2022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGGGTTGGTTTTGCTT	NA	False	NA	16	True	AATAAA	-16	NA	172282475	172311828	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_172282660_172286566_172286662_172287246_172287341_172288541_172288682_172288954_172289034_172305096_172305211_172308193_172308252_172308348_172308445_172310515
ENSMUST00000029023.4	chr2	+	646	4	FSM	ENSMUSG00000027518.4	ENSMUST00000029023.4	646	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGTATGTTTGTTGA	NA	False	NA	NA	False	AATAGA	-17	NA	173364378	173370294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_173364525_173367796_173367879_173369637_173369740_173369978
ENSMUST00000029047.12	chr3	-	2288	8	FSM	ENSMUSG00000027534.17	ENSMUST00000029047.12	2288	8	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_2	14.2771402841703	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGTGAGTTTCTTTAGT	NA	False	NA	1	True	ATTAAA	-20	NA	10505147	10483205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_10484284_10485256_10485377_10485799_10485937_10491222_10491293_10499417_10499567_10500505_10500593_10502870_10503345_10504974
ENSMUST00000029071.9	chr3	+	2299	7	FSM	ENSMUSG00000027555.9	ENSMUST00000029071.9	2299	7	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_4	16.344384016808	661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTATCTTTTGGAAGAT	2179	False	NA	NA	False	AATAAA	-15	NA	14706786	14728062	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_14706906_14710096_14710295_14715718_14715838_14719943_14720040_14721288_14721352_14721968_14722125_14726514
ENSMUST00000029078.9	chr3	+	1788	7	FSM	ENSMUSG00000027562.13	ENSMUST00000029078.9	1788	7	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_4	9.4339811320566	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGTGCCTGATTGTCT	NA	False	NA	11	True	AATAAA	-14	NA	14951487	14965830	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_14951847_14952893_14953092_14960081_14960201_14960594_14960688_14961759_14961823_14962973_14963130_14965030
ENSMUST00000029082.9	chr2	-	914	7	FSM	ENSMUSG00000027566.16	ENSMUST00000029082.9	914	7	0	0	0	0	multi-exon	FALSE	canonical	3	3926	junction_1	568.041078326794	18740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGATGAGAACCTGTC	NA	False	NA	-12	True	AATAAA	-17	NA	179684226	179678166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_179678367_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179684070
ENSMUST00000029085.9	chr2	+	1510	5	FSM	ENSMUSG00000027569.16	ENSMUST00000029085.9	1510	5	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_3	10.4253297309965	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACTAAAAAAAAAAAAAACCT	NA	False	NA	NA	False	ATTAAA	-3	NA	180224504	180228080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_180224749_180225193_180225316_180226198_180226281_180226589_180226665_180227093
ENSMUST00000029087.4	chr2	+	2449	7	FSM	ENSMUSG00000049401.11	ENSMUST00000029087.4	2449	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_6	11.4370256428652	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGGCCGTGTTCTGTTTG	NA	False	NA	22	True	AATAAA	-22	NA	180231037	180237629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_180231415_180232779_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000
ENSMUST00000029092.13	chr2	+	2714	14	FSM	ENSMUSG00000027575.20	ENSMUST00000029092.13	2714	14	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	25.5745805752046	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCAGTGCTTGCTTCAC	4034	False	NA	25	True	NA	NA	NA	180609026	180624319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_180609123_180609394_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180621453_180621514_180622190_180622268_180622829
ENSMUST00000029116.14	chr2	+	3569	7	FSM	ENSMUSG00000027589.15	ENSMUST00000029116.14	3569	7	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_6	11.3431330181157	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCTGTGTTGAGTATG	NA	False	NA	26	True	AATAAA	-29	NA	181479646	181499254	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_181479778_181482947_181483132_181484167_181484499_181486188_181486292_181488260_181488433_181493378_181493503_181496730
ENSMUST00000029135.15	chr2	+	2931	18	FSM	ENSMUSG00000027605.19	ENSMUST00000029135.15	2931	18	0	0	0	0	multi-exon	FALSE	canonical	2	49	junction_8	8.02030295659528	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTTTTTTAGGTATCTG	2007	False	NA	19	True	AATAAA	-23	NA	155359867	155404666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_155360205_155363900_155364097_155391110_155391203_155391395_155391500_155391718_155391792_155392022_155392099_155392274_155392390_155397773_155397912_155398252_155398424_155398697_155398832_155399016_155399150_155399229_155399287_155399468_155399550_155400510_155400620_155402541_155402611_155402949_155403127_155403665_155403741_155403872
ENSMUST00000029147.16	chr2	-	2051	13	FSM	ENSMUSG00000027618.18	ENSMUST00000029147.16	2051	13	0	0	0	0	multi-exon	TRUE	canonical	3	228	junction_1	23.0952135493242	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTGAATTTTTGAGC	3106	False	NA	-2	True	AATAAA	-17	NA	155986106	155965558	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970357_155970516_155973572_155973708_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939
ENSMUST00000029149.13	chr2	-	2711	17	FSM	ENSMUSG00000027620.17	ENSMUST00000029149.13	2711	17	0	0	0	0	multi-exon	FALSE	canonical	3	1090	junction_5	453.136943808105	3127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAGAAAATTTTCGTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	156022087	155989168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
ENSMUST00000029178.7	chr2	+	2442	16	FSM	ENSMUSG00000027649.16	ENSMUST00000029178.7	2442	16	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_9	43.3601968015214	2688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGCTTCTCTAGTCTTGC	NA	False	NA	NA	False	GGGGCT	-25	NA	157579320	157733534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_157579480_157616330_157616520_157621731_157621839_157630911_157631052_157641346_157641445_157648594_157648689_157651384_157651477_157659674_157659748_157659970_157660030_157661373_157661523_157678429_157678612_157710219_157710318_157713027_157713109_157726052_157726191_157726347_157726421_157732824
ENSMUST00000029179.11	chr2	-	3830	8	FSM	ENSMUSG00000027650.13	ENSMUST00000029179.11	3830	8	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_3	12.5746749055231	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGAGAGATTTATTTCT	NA	False	NA	-8	True	NA	NA	NA	157870353	157823722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_157824381_157834887_157834976_157835273_157835479_157837300_157837442_157838996_157839146_157842539_157842729_157848938_157851279_157870293
ENSMUST00000029183.3	chr2	+	2266	4	FSM	ENSMUSG00000027654.3	ENSMUST00000029183.3	2266	4	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_3	16.3571255285137	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGATTCTTTTTGTT	406	False	NA	8	True	AATAAA	-16	NA	158610012	158628557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_158610508_158621764_158621933_158625052_158625178_158627079
ENSMUST00000029214.14	chr3	+	2010	14	FSM	ENSMUSG00000027671.15	ENSMUST00000029214.14	2010	14	0	0	0	0	multi-exon	FALSE	canonical	3	1234	junction_9	101.670310666418	8043	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGCTGGATTTGTCTGTG	NA	False	NA	23	True	AATAAA	-20	NA	32762655	32781122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
ENSMUST00000029252.8	chr3	-	1891	11	FSM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_6	40.0710618776194	1338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	-18	True	AATAAA	-19	NA	30702018	30678415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
ENSMUST00000029259.10	chr3	-	2455	19	FSM	ENSMUSG00000027709.10	ENSMUST00000029259.10	2455	19	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_8	26.6884748788316	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGAGCTGTAGTTTTTTT	NA	False	NA	NA	False	TATAAA	-28	NA	36054827	36013981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_36014279_36015081_36015154_36017733_36017842_36018475_36018614_36022572_36022623_36026626_36026714_36028222_36028440_36029943_36030054_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044968_36048064_36048161_36049929_36050067_36051673_36051721_36054629
ENSMUST00000029266.14	chr3	-	1731	13	FSM	ENSMUSG00000027712.14	ENSMUST00000029266.14	1731	13	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	8.69985632065266	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTAGGTTTGTGTTT	NA	False	NA	3	True	AATAAA	-21	NA	36530043	36503071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_36503556_36504460_36504584_36504786_36504846_36506335_36506432_36507619_36507714_36511141_36511199_36511607_36511688_36514591_36514683_36516029_36516144_36518116_36518212_36519399_36519485_36529578_36529610_36529721
ENSMUST00000029269.12	chr3	+	1617	12	FSM	ENSMUSG00000027714.12	ENSMUST00000029269.12	1617	12	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_11	43.5980892749872	1917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTGAGAGCCGAATGAGT	NA	False	NA	15	True	AATAAA	-23	NA	36606754	36619876	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_36606901_36607183_36607279_36607954_36608075_36608188_36608292_36608786_36608925_36609630_36609714_36611011_36611145_36615251_36615341_36616166_36616314_36617221_36617407_36619366_36619446_36619577
ENSMUST00000029277.13	chr3	+	2890	16	FSM	ENSMUSG00000027722.15	ENSMUST00000029277.13	2890	16	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	86.3305276249369	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGTTTTATCTTGTGCTT	NA	False	NA	11	True	AATAAA	-20	NA	37474446	37633245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_37474650_37478662_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37632900
ENSMUST00000029316.16	chr3	-	1300	11	FSM	ENSMUSG00000027752.16	ENSMUST00000029316.16	1300	11	0	0	0	0	multi-exon	FALSE	canonical	3	1645	junction_10	187.140588863026	19840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGTCCTTACGTTGTT	NA	False	NA	-12	True	AATAAA	-27	NA	54642814	54636098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
ENSMUST00000029344.10	chr3	+	3011	16	FSM	ENSMUSG00000027775.10	ENSMUST00000029344.10	3011	16	0	0	0	0	multi-exon	FALSE	canonical	3	661	junction_4	69.2886394407882	1626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAGGATAAATGACTGC	NA	False	NA	19	True	AATAAA	-20	NA	67490073	67511570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_67490311_67491976_67492030_67492930_67493044_67494633_67494677_67495250_67495319_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027
ENSMUST00000029369.5	chr3	+	2364	11	FSM	ENSMUSG00000027794.5	ENSMUST00000029369.5	2364	11	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_8	29.6317397396778	373	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGTGCAAGGAATCTGAT	NA	False	NA	20	True	AATAAA	-22	NA	55089448	55117378	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_55089536_55096541_55096757_55097730_55097793_55097874_55097980_55099659_55099757_55102493_55102605_55104147_55104296_55104418_55104508_55111754_55111877_55115013_55115271_55116307
ENSMUST00000029382.13	chr3	+	1752	10	FSM	ENSMUSG00000027804.14	ENSMUST00000029382.13	1752	10	0	0	0	0	multi-exon	FALSE	canonical	3	2177	junction_5	219.851352699843	13240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGGATGTCCTTTCCTG	NA	False	NA	29	True	AATAAA	-19	NA	79498671	79510957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_79498865_79500916_79501058_79502508_79502616_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
ENSMUST00000029386.14	chr3	-	2377	13	FSM	ENSMUSG00000027809.15	ENSMUST00000029386.14	2377	13	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_10	10.8790701195767	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTACCTTTCAAGTCCTTC	3584	False	NA	0	True	AATAAA	-30	NA	79536170	79511094	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_79511473_79512211_79512434_79512936_79513120_79517105_79517275_79519218_79519363_79520928_79521070_79522306_79522454_79523230_79523309_79525613_79525733_79526145_79526228_79530044_79530275_79530847_79530986_79535824
ENSMUST00000029387.15	chr3	+	2299	14	FSM	ENSMUSG00000027810.15	ENSMUST00000029387.15	2299	14	0	0	0	0	multi-exon	TRUE	canonical	3	611	junction_6	73.3195163601748	1754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	False	NA	5	True	AATAAA	-16	NA	58433241	58464922	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_58433508_58438507_58438578_58444954_58445030_58446948_58447068_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
ENSMUST00000029388.10	chr3	+	1970	2	FSM	ENSMUSG00000027811.10	ENSMUST00000029388.10	1970	2	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	0	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGTTTCTTTAGACTCA	4369	False	NA	NA	False	AATAAA	-14	NA	79536385	79540127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_79536664_79538435
ENSMUST00000029414.12	chr3	-	2957	5	FSM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	0	0	0	0	multi-exon	FALSE	canonical	3	545	junction_4	56.4225132371822	1409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTTTTCTGTAATTCT	2716	False	NA	-1	True	ATTAAA	-20	NA	65300044	65287075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
ENSMUST00000029424.12	chr3	-	907	8	FSM	ENSMUSG00000027835.12	ENSMUST00000029424.12	907	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	493.920757091372	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTAAAGTTTGACTGT	NA	False	NA	NA	False	ATTAAA	-15	NA	75464118	75424767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_75424909_75428008_75428092_75428337_75428417_75434894_75435022_75436116_75436235_75440847_75440898_75448466_75448686_75464028
ENSMUST00000029446.13	chr3	+	4318	20	FSM	ENSMUSG00000068823.11	ENSMUST00000029446.13	4318	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	4594.89725408776	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	22	True	AATAAA	-25	NA	102927741	102965502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ENSMUST00000029476.9	chr3	+	2810	5	FSM	ENSMUSG00000027879.10	ENSMUST00000029476.9	2810	5	0	0	0	0	multi-exon	FALSE	canonical	3	330	junction_4	8.07774721070176	2012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCAGTGTGAAGTTCTGT	NA	False	NA	18	True	AATAAA	-17	NA	97808505	97830592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_97808737_97814536_97814647_97819894_97820056_97821815_97821963_97828431
ENSMUST00000029480.9	chr3	-	3026	6	FSM	ENSMUSG00000027881.15	ENSMUST00000029480.9	3026	6	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_4	114.013332553697	1012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCTGGGTGTTGGTTTCC	6850	False	NA	-9	True	AATAAA	-18	NA	108819043	108810122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_108812079_108812426_108812651_108815102_108815164_108815247_108815400_108815651_108815721_108818479
ENSMUST00000029489.15	chr3	-	1707	8	FSM	ENSMUSG00000027890.18	ENSMUST00000029489.15	1707	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_7	25.3175747621437	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGATGTCTTTTCCTAC	NA	False	NA	-4	True	AATAAA	-20	NA	107952210	107947723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950835_107950918_107951210_107951276_107951668_107951745_107951952
ENSMUST00000029515.5	chr3	+	511	3	FSM	ENSMUSG00000027907.5	ENSMUST00000029515.5	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	9.5	7987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGAGAGTCAGTAGATT	NA	False	NA	7	True	AATAAA	-25	NA	93427794	93433594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_93427861_93431357_93431507_93433298
ENSMUST00000029546.15	chr3	+	1101	5	FSM	ENSMUSG00000027937.16	ENSMUST00000029546.15	1101	5	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_4	18.2260116317312	1977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTAGTGTAATCATTTG	NA	False	NA	4	True	AATAAA	-14	NA	90138903	90143145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_90139348_90139501_90139540_90139735_90139819_90141229_90141310_90142689
ENSMUST00000029549.16	chr3	+	2230	8	FSM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	0	0	0	0	multi-exon	FALSE	canonical	3	3249	junction_3	140.088164659085	5017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCGGCTTGACTTTGTTA	NA	False	NA	18	True	AATAAA	-21	NA	89986846	90008208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
ENSMUST00000029564.12	chr3	+	1194	5	FSM	ENSMUSG00000027952.17	ENSMUST00000029564.12	1194	5	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_1	43.1878165690279	6332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTGGAGACTGATGATT	140	False	NA	21	True	AATAAA	-20	NA	89366424	89376320	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89366772_89369188_89369253_89371602_89371756_89374853_89374984_89375820
ENSMUST00000029565.11	chr3	-	1022	6	FSM	ENSMUSG00000027953.14	ENSMUST00000029565.11	1022	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_5	11.5481600266016	699	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177877	89175552	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177258_89177368_89177447_89177692
ENSMUST00000029566.9	chr3	-	1480	5	FSM	ENSMUSG00000027954.10	ENSMUST00000029566.9	1480	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	2.77263412660235	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTCTGCCCCACCATG	1666	False	NA	NA	False	AATAAA	-21	NA	89186952	89179039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89179912_89180078_89180130_89180263_89180330_89183436_89183733_89186757
ENSMUST00000029570.9	chr3	-	2782	12	FSM	ENSMUSG00000089911.5	ENSMUST00000029570.9	2782	12	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_3	57.2050104723397	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTGATCTGTGAGTCCC	NA	False	NA	-1	True	AATAAA	-36	NA	116456326	116424812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_116426130_116427370_116427535_116428551_116428650_116429926_116430040_116434035_116434108_116434895_116435010_116435358_116435578_116439014_116439130_116441430_116441559_116442167_116442231_116445052_116445149_116456043
ENSMUST00000029588.10	chr3	+	2121	13	Intergenic	novelGene_2	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2454	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGAGCATCTCGGGGGCG	NA	False	NA	NA	False	NA	NA	NA	127330362	127346998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Intergenic_chr3_+_127330684_127334193_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
ENSMUST00000029610.9	chr3	-	1789	8	FSM	ENSMUSG00000027984.9	ENSMUST00000029610.9	1789	8	0	0	0	0	multi-exon	FALSE	canonical	3	722	junction_3	33.5492327841959	2119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGCCTGTCTTCTCTGA	NA	False	NA	NA	False	AATAAA	-43	NA	131065750	131027067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
ENSMUST00000029626.9	chr3	+	1456	7	FSM	ENSMUSG00000027997.10	ENSMUST00000029626.9	1456	7	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_5	8.11206234909197	1287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGGCACTCTGAGGAT	NA	False	NA	NA	False	AATAAA	-14	NA	129695073	129707752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_129695156_129699114_129699157_129699551_129699702_129700049_129700127_129704171_129704348_129705766_129705924_129706980
ENSMUST00000029643.15	chr3	-	1271	7	FSM	ENSMUSG00000028010.17	ENSMUST00000029643.15	1271	7	0	0	0	0	multi-exon	FALSE	canonical	3	868	junction_6	342.204130113397	11093	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTTATTGAACGGAACCTA	NA	False	NA	-1	True	AATAAA	-22	NA	129625045	129618560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_129618859_129619196_129619266_129620472_129620624_129622553_129622614_129622985_129623141_129624243_129624503_129624766
ENSMUST00000029644.16	chr3	+	1226	12	FSM	ENSMUSG00000028013.17	ENSMUST00000029644.16	1226	12	0	0	0	0	multi-exon	TRUE	canonical	3	471	junction_4	36.8801946894343	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCTTTTATATATTTAT	NA	False	NA	21	True	AATAAA	-28	NA	133015870	133083839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_133016043_133026696_133026762_133028332_133028378_133032408_133032463_133036153_133036274_133045023_133045111_133053824_133053952_133073583_133073712_133076140_133076227_133079383_133079454_133082309_133082350_133083607
ENSMUST00000029663.11	chr3	-	1126	7	FSM	ENSMUSG00000028029.12	ENSMUST00000029663.11	1126	7	0	0	0	0	multi-exon	FALSE	canonical	3	854	junction_6	52.4195150259477	9737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCTTGCTCATTTTTTG	NA	False	NA	-16	True	AATAAA	-31	NA	132389645	132366259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_132366503_132373145_132373315_132377739_132377949_132379725_132379891_132380509_132380624_132382765_132382900_132389553
ENSMUST00000029666.14	chr3	+	2600	12	FSM	ENSMUSG00000028032.14	ENSMUST00000029666.14	2600	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	6.54292880561694	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGGTTTGTGTGCATAT	NA	False	NA	7	True	AATAAA	-18	NA	131270528	131349432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_131270745_131285071_131285187_131288141_131288378_131288847_131288987_131290808_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
ENSMUST00000029674.8	chr3	-	1599	4	FSM	ENSMUSG00000028040.8	ENSMUST00000029674.8	1599	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	2.62466929133727	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCCTTCTTTGTGTGGCC	1612	False	NA	NA	False	AATAAA	-14	NA	89245335	89240696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89241740_89242088_89242158_89242483_89242780_89245144
ENSMUST00000029679.4	chr3	-	849	3	FSM	ENSMUSG00000028044.7	ENSMUST00000029679.4	849	3	0	0	0	0	multi-exon	FALSE	canonical	3	2335	junction_2	153.5	24322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGTGGTTATAAGACTGT	NA	False	NA	-12	True	ATTAAA	-22	NA	89325690	89322778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89323271_89323580_89323709_89325461
ENSMUST00000029684.15	chr3	+	1489	9	FSM	ENSMUSG00000028049.16	ENSMUST00000029684.15	1489	9	0	0	0	0	multi-exon	TRUE	canonical	3	743	junction_2	141.598022585063	1823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCATTTCCTGTATCT	NA	False	NA	18	True	ATTAAA	-22	NA	89084779	89090072	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
ENSMUST00000029692.15	chr3	+	1204	6	FSM	ENSMUSG00000028057.15	ENSMUST00000029692.15	1204	6	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	6.67532770731145	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCCTTCAACCTGAACT	2217	False	NA	74	True	NA	NA	NA	88624144	88637034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_88624265_88624632_88624778_88624908_88624966_88633301_88633376_88633586_88633779_88636418
ENSMUST00000029696.11	chr3	+	2981	14	FSM	ENSMUSG00000028060.15	ENSMUST00000029696.11	2981	14	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_11	33.2047619027415	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTAATGTGCATTGTT	8	True	NA	16	True	AATAAA	-16	NA	88593109	88620231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88616249_88617136_88617250_88618067_88618160_88618936
ENSMUST00000029698.15	chr3	-	668	4	FSM	ENSMUSG00000028062.16	ENSMUST00000029698.15	668	4	0	0	0	0	multi-exon	FALSE	canonical	3	2467	junction_3	160.918889161244	14985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCACCTGCTTTC	977	False	NA	-6	True	AATAAA	-14	NA	88460331	88457125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460102
ENSMUST00000029707.13	chr3	+	1630	8	FSM	ENSMUSG00000028069.17	ENSMUST00000029707.13	1630	8	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	22.2417148068898	1251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGTCTTTGTTTTGTTTT	1719	False	NA	36	True	TTTAAA	-25	NA	87950414	87963297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_87950487_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
ENSMUST00000029708.8	chr3	-	908	6	FSM	ENSMUSG00000028070.8	ENSMUST00000029708.8	908	6	0	0	0	0	multi-exon	TRUE	canonical	3	839	junction_3	34.2963554915096	7207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	-4	True	AATAAA	-25	NA	87965802	87963826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_87964084_87964292_87964441_87965030_87965145_87965227_87965339_87965436_87965546_87965633
ENSMUST00000029717.4	chr3	-	1946	6	FSM	ENSMUSG00000028076.13	ENSMUST00000029717.4	1946	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	13.2	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATCCAGAGGTTTTACTT	NA	False	NA	NA	False	AATAAA	-20	NA	86906748	86903140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_86903909_86903996_86904094_86904644_86904924_86905378_86905658_86905939_86906213_86906498
ENSMUST00000029722.7	chr3	-	977	6	FSM	ENSMUSG00000028081.7	ENSMUST00000029722.7	977	6	0	0	0	0	multi-exon	FALSE	canonical	3	3673	junction_2	2509.92074775281	325979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTGTCCATTGATTTG	NA	False	NA	NA	False	AATAAA	-21	NA	86050009	86045246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
ENSMUST00000029726.6	chr3	+	1856	13	FSM	ENSMUSG00000028085.13	ENSMUST00000029726.6	1856	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	49.5044189946716	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCAGATGCCGTGGGTGC	NA	False	NA	9	True	AATAAA	-13	NA	85481501	85561465	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_85481627_85483170_85483322_85509166_85509281_85511760_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85559587_85559723_85561030
ENSMUST00000029741.9	chr3	-	2390	15	FSM	ENSMUSG00000028099.9	ENSMUST00000029741.9	2390	15	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_5	23.0394515240839	1150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGGTCAGCACGATAAGGA	NA	False	NA	NA	False	CATAAA	-34	NA	96634944	96618805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96633149_96633316_96634664
ENSMUST00000029752.15	chr3	-	2400	18	FSM	ENSMUSG00000028107.15	ENSMUST00000029752.15	2400	18	0	0	0	0	multi-exon	FALSE	canonical	1	178	junction_5	104.738626737206	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662183	95647287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
ENSMUST00000029754.13	chr3	+	1385	15	FSM	ENSMUSG00000028109.15	ENSMUST00000029754.13	1385	15	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_6	50.4359059821958	1003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATATTGTGTTTACCTGA	NA	False	NA	NA	False	AATAAA	-11	NA	95466988	95494903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
ENSMUST00000029773.13	chr3	+	2049	7	FSM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	0	0	0	0	multi-exon	FALSE	canonical	3	4254	junction_2	486.023204750098	8915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGGCTGGTTATTTTCT	NA	False	NA	27	True	AATAAA	-27	NA	121220145	121251856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
ENSMUST00000029786.14	chr3	+	1612	7	FSM	ENSMUSG00000028140.14	ENSMUST00000029786.14	1612	7	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_4	26.1002341411379	1914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAAAAGAACTTC	8490	False	NA	NA	False	NA	NA	NA	94350631	94356015	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942_94354045_94354566_94354651_94355092
ENSMUST00000029804.13	chr3	-	2686	11	FSM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_4	33.5143252953121	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACTTTTTCTAGTTGTA	NA	False	NA	-9	True	ATTAAA	-15	NA	138195276	138164716	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_138166262_138168125_138168192_138171984_138172129_138174594_138174727_138177911_138178051_138179664_138179749_138180747_138180840_138184630_138184692_138186448_138186562_138188827_138188880_138195018
ENSMUST00000029814.10	chr3	+	3675	17	FSM	ENSMUSG00000028164.16	ENSMUST00000029814.10	3675	17	0	0	0	0	multi-exon	TRUE	canonical	3	85	junction_8	25.1755554804656	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCATTGAACACCATGTC	NA	False	NA	11	True	AATAAA	-19	NA	135191371	135277165	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135191619_135212669_135212765_135216735_135216842_135217563_135217735_135223663_135223788_135228752_135228929_135230277_135230389_135248072_135248225_135250486_135250605_135253310_135253398_135254960_135255129_135256823_135257043_135260520_135260686_135268965_135269111_135272248_135272392_135273224_135273483_135275975
ENSMUST00000029817.11	chr3	+	1059	10	FSM	ENSMUSG00000028167.16	ENSMUST00000029817.11	1059	10	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	15.3099660916801	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTAGTTTTTTTTCTTAA	NA	False	NA	21	True	AATAAA	-31	NA	134987021	135010187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_134987130_134991348_134991429_134994021_134994101_134995315_134995413_134996754_134996864_135000988_135001050_135002580_135002695_135006434_135006494_135007322_135007416_135009928
ENSMUST00000029842.9	chr3	+	1949	3	FSM	ENSMUSG00000028191.12	ENSMUST00000029842.9	1949	3	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_2	11.5	1955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAATATTTCAGAG	NA	False	NA	87	True	AATATA	-9	NA	145630016	145640111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_145630271_145636160_145636450_145638705
ENSMUST00000029846.5	chr3	-	2019	5	FSM	ENSMUSG00000028195.5	ENSMUST00000029846.5	2019	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	2.58602010819715	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGAATGTATGTTGTTT	NA	False	NA	NA	False	AATAAA	-16	NA	145355736	145352730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_145353724_145353951_145354167_145354287_145354633_145354976_145355191_145355484
ENSMUST00000029891.12	chr4	-	2690	8	FSM	ENSMUSG00000028232.14	ENSMUST00000029891.12	2690	8	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	11.6233403467474	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGAAAACTATTTTTGG	280	False	NA	NA	False	AATAAA	-14	NA	3574853	3549040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_3550580_3551751_3551892_3554353_3554415_3560498_3560693_3564092_3564258_3569363_3569753_3570320_3570373_3574703
ENSMUST00000029909.3	chr4	+	2651	7	FSM	ENSMUSG00000028247.3	ENSMUST00000029909.3	2651	7	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_5	29.1414176426306	3151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTGGCCATTGTGC	-10	True	NA	11	True	NA	NA	NA	21879672	21912162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_21879797_21892808_21892936_21896554_21896708_21899057_21899158_21900263_21900507_21908482_21908643_21910418
ENSMUST00000029912.11	chr4	+	2745	9	FSM	ENSMUSG00000028249.16	ENSMUST00000029912.11	2745	9	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_4	40.7944542799631	1465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGTAACAGACTTAATGTT	7849	False	NA	NA	False	TATAAA	-13	NA	6365649	6396284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_6365760_6377076_6377143_6378965_6379048_6380989_6381100_6385025_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
ENSMUST00000029915.6	chr4	-	1588	4	FSM	ENSMUSG00000028251.6	ENSMUST00000029915.6	1588	4	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_1	27.288581250528	1413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGCATGTATTTCTTTAA	-17	True	NA	0	True	AATAAA	-24	NA	21767212	21757381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_21758476_21759369_21759530_21759622_21759794_21767049
ENSMUST00000029920.15	chr3	+	2239	15	FSM	ENSMUSG00000028256.17	ENSMUST00000029920.15	2239	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	27.9021614260419	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAATAACAGTATAAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	144824380	144859650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_144824544_144829971_144830137_144831853_144831987_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
ENSMUST00000029938.10	chr3	+	1455	7	FSM	ENSMUSG00000028271.10	ENSMUST00000029938.10	1455	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	21.5129160170246	2472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTGTTATAGTATTAAT	NA	False	NA	8	True	AATAAA	-15	NA	142470805	142489367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_142471050_142477146_142477254_142483951_142484086_142485452_142485600_142485730_142485861_142487100_142487383_142488956
ENSMUST00000029968.14	chr4	+	1868	20	FSM	ENSMUSG00000028292.15	ENSMUST00000029968.14	1868	20	0	0	0	0	multi-exon	TRUE	canonical	3	576	junction_1	51.5992441268264	1895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTAGTAGTGTGTTTT	-12	True	NA	12	True	AATAGA	-27	NA	34614956	34660167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
ENSMUST00000029970.14	chr4	-	2039	8	FSM	ENSMUSG00000028293.15	ENSMUST00000029970.14	2039	8	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_4	17.6831523646385	786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTGCAGTTACTTTGT	-21	True	NA	-13	True	AATAAA	-14	NA	34687438	34663256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34675029_34675183_34675471_34675632_34683284_34683463_34687243
ENSMUST00000029972.4	chr4	-	786	3	FSM	ENSMUSG00000028295.15	ENSMUST00000029972.4	786	3	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	5.5	1932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	NA	False	NA	NA	False	AATAAA	-6	NA	34778423	34768663	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_34769148_34771257_34771415_34778278
ENSMUST00000030003.10	chr4	-	1077	4	FSM	ENSMUSG00000028322.12	ENSMUST00000030003.10	1077	4	0	0	0	0	multi-exon	FALSE	canonical	3	481	junction_1	46.9065264352651	5367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTGTAGTTCTACAGT	-22	True	NA	-1	True	AATAAA	-17	NA	45320629	45316612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_45317029_45317677_45317830_45319549_45319700_45320270
ENSMUST00000030014.9	chr4	+	3010	23	FSM	ENSMUSG00000028330.9	ENSMUST00000030014.9	3010	23	0	0	0	0	multi-exon	TRUE	canonical	3	296	junction_19	36.3529529761015	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGGAGTCATGGTTTAT	27	False	NA	21	True	AATAAA	-21	NA	46138612	46172403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_46138887_46144784_46144874_46145373_46145475_46147378_46147536_46149861_46149970_46150638_46150761_46152015_46152086_46152909_46153126_46155749_46155848_46156759_46156824_46157822_46157934_46159658_46159724_46161260_46161324_46162091_46162167_46162960_46163065_46165165_46165289_46166737_46166841_46167301_46167396_46168450_46168555_46169128_46169244_46169944_46170074_46170471_46170586_46171892
ENSMUST00000030015.6	chr4	-	1527	5	FSM	ENSMUSG00000028331.13	ENSMUST00000030015.6	1527	5	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	13.5346776836392	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTCTGAGCTTTGAAT	-14	True	NA	NA	False	ATTAAA	-27	NA	46389437	46379863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_46380311_46382058_46382686_46386093_46386252_46387567_46387743_46389317
ENSMUST00000030018.5	chr4	+	2179	6	FSM	ENSMUSG00000028334.11	ENSMUST00000030018.5	2179	6	0	0	0	0	multi-exon	FALSE	canonical	3	811	junction_3	76.1377698648969	3322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTACTTTGATGTGTGTGT	NA	False	NA	14	True	NA	NA	NA	46489247	46503632	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_46489491_46492705_46492922_46499042_46499143_46500065_46500221_46500712_46500980_46502434
ENSMUST00000030028.5	chr4	-	2624	12	FSM	ENSMUSG00000028343.11	ENSMUST00000030028.5	2624	12	0	0	0	0	multi-exon	TRUE	canonical	3	625	junction_9	43.7020339182862	1531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCAGCTTCCAGTTCTTA	20	True	NA	NA	False	AATAAA	-29	NA	48279558	48193322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48236872_48236989_48241295_48241336_48243476_48243550_48279383
ENSMUST00000030030.15	chr4	-	3102	15	FSM	ENSMUSG00000028345.16	ENSMUST00000030030.15	3102	15	0	0	0	0	multi-exon	FALSE	canonical	3	662	junction_12	54.2776309771327	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATGAGCTTCCTTCATA	NA	False	NA	-3	True	ATTAAA	-18	NA	48473459	48430857	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468280_48468994_48469883_48470073_48473265
ENSMUST00000030078.12	chr4	+	2611	11	FSM	ENSMUSG00000028383.18	ENSMUST00000030078.12	2611	11	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	12.963024338479	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTATGTGCCTTTTATTTC	0	True	NA	20	True	NA	NA	NA	59581562	59618689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_59581776_59592154_59592319_59593236_59593336_59594395_59594511_59596862_59596967_59597256_59597356_59601372_59601568_59606471_59606544_59610509_59610876_59612681_59612811_59617634
ENSMUST00000030090.4	chr4	-	1206	12	FSM	ENSMUSG00000028393.11	ENSMUST00000030090.4	1206	12	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	45.4718149012465	1529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGTGCCCTCTTCCTGC	NA	False	NA	-1	True	AGTAAA	-18	NA	62438155	62427405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62438096
ENSMUST00000030091.10	chr4	-	1805	4	FSM	ENSMUSG00000028394.10	ENSMUST00000030091.10	1805	4	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_3	9.56846672960488	4501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCATACAATGTGCTTT	NA	False	NA	1	True	AATAAA	-22	NA	62443305	62440885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_62442348_62442554_62442674_62442986_62443073_62443167
ENSMUST00000030103.9	chr4	-	741	2	FSM	ENSMUSG00000028398.9	ENSMUST00000030103.9	741	2	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_1	0	4756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTAGTTCTTTTAATTTT	NA	False	NA	NA	False	AATAAA	-16	NA	75196542	75195590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_75196007_75196217
ENSMUST00000030117.5	chr4	-	2418	12	FSM	ENSMUSG00000028409.12	ENSMUST00000030117.5	2418	12	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_8	75.1643928360578	6867	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTTCCATGTTGATGTCC	8535	False	NA	61	True	ACTAAA	-34	NA	40757923	40736541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626_40755838_40757776
ENSMUST00000030125.5	chr4	-	1295	7	FSM	ENSMUSG00000028416.14	ENSMUST00000030125.5	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	1821	junction_3	173.811599791907	874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTTGGCTCTGTGGTGG	3	True	NA	-9	True	AAAAAG	-37	NA	40948243	40936400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_40936677_40937131_40937195_40939076_40939185_40941524_40941639_40943624_40943708_40946168_40946298_40947721
ENSMUST00000030127.13	chr4	+	2862	6	FSM	ENSMUSG00000028420.14	ENSMUST00000030127.13	2862	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_3	9.52050418832952	678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGGTATTCTTCTTC	-16	True	NA	NA	False	ATTAAA	-31	NA	53826044	53862019	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_53826221_53840626_53840784_53848865_53849051_53850473_53850562_53854311_53854430_53859881
ENSMUST00000030128.6	chr4	+	1519	8	FSM	ENSMUSG00000028419.6	ENSMUST00000030128.6	1519	8	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_1	44.0352363547231	833	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAATTGTAGTATCGCTTT	0	True	NA	14	True	AATAAA	-16	NA	40948406	40965303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_40948677_40949453_40949559_40950513_40950561_40952367_40952462_40952981_40953054_40958889_40958999_40960858_40960972_40964594
ENSMUST00000030145.9	chr4	-	3442	9	FSM	ENSMUSG00000028436.9	ENSMUST00000030145.9	3442	9	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_1	50.3213113402264	1171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTTTGAGTGACTATATA	1860	False	NA	0	True	AATAAA	-18	NA	41314889	41291299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
ENSMUST00000030154.7	chr4	+	845	3	FSM	ENSMUSG00000028443.7	ENSMUST00000030154.7	845	3	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	26.5	2742	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGATGCTTTCTTGGAC	4	True	NA	32	True	AATAAA	-28	NA	41465150	41480926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_41465181_41477513_41477648_41480245
ENSMUST00000030165.5	chr4	-	2771	14	FSM	ENSMUSG00000028453.11	ENSMUST00000030165.5	2771	14	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_11	17.9578731229673	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGTTGTATGTGTGTG	163	False	NA	-6	True	ATTAAA	-16	NA	43010355	43002342	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005034_43005210_43005278_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43008914_43009147_43009280_43009706_43009801_43010001
ENSMUST00000030181.12	chr4	+	817	6	FSM	ENSMUSG00000028461.13	ENSMUST00000030181.12	817	6	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_5	16.9162643630324	2022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTCCTCTGTGCTT	-26	True	NA	14	True	AGTAAA	-45	NA	43493361	43495921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341_43495433_43495508_43495622_43495696
ENSMUST00000030192.5	chr4	-	610	5	FSM	ENSMUSG00000028470.11	ENSMUST00000030192.5	610	5	0	0	0	0	multi-exon	FALSE	canonical	3	693	junction_3	25.1433390781734	5102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGTATCCCTGTCTTA	-12	True	NA	-7	True	AATAAA	-14	NA	43656466	43654228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_43654412_43654512_43654586_43654715_43654821_43654905_43655047_43656358
ENSMUST00000030205.14	chr4	-	842	7	FSM	ENSMUSG00000038172.15	ENSMUST00000030205.14	842	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	86.0905531015647	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATGCTCTATTTTTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	83242426	83177434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_83177704_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
ENSMUST00000030206.10	chr4	+	1405	9	FSM	ENSMUSG00000028483.14	ENSMUST00000030206.10	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_6	50.2767341819255	1717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGATTCTTTTCTCCAA	NA	False	NA	18	True	TATAAA	-18	NA	83335960	83371577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123_83360207_83368307_83368473_83369441_83369550_83371277
ENSMUST00000030254.15	chr4	+	1898	4	FSM	ENSMUSG00000035212.15	ENSMUST00000030254.15	1898	4	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_3	48.8011839564939	2808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGTTGCATTTCATAAA	8215	False	NA	8	True	AATAAA	-20	NA	101504914	101516561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_101505023_101509595_101509672_101513305_101513493_101515034
ENSMUST00000030261.6	chr4	+	958	3	FSM	ENSMUSG00000028536.13	ENSMUST00000030261.6	958	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTTTTTATATTTTTC	8940	False	NA	NA	False	NA	NA	NA	118384439	118387425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_118384535_118386395_118386509_118386675
ENSMUST00000030288.14	chr4	-	2871	24	FSM	ENSMUSG00000028559.18	ENSMUST00000030288.14	2871	24	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_18	119.667039647815	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTTCTTTCATT	NA	False	NA	-6	True	CATAAA	-20	NA	109059469	108918851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
ENSMUST00000030292.12	chr4	-	952	7	FSM	ENSMUSG00000028563.17	ENSMUST00000030292.12	952	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	263.049266614957	2681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTGACCTGTTATTAA	NA	False	NA	-4	True	AATAAA	-18	NA	98271483	98243606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_98243918_98246154_98246285_98253799_98253874_98258728_98258821_98263156_98263251_98268854_98268929_98271306
ENSMUST00000030296.9	chr4	+	1359	7	FSM	ENSMUSG00000028567.9	ENSMUST00000030296.9	1359	7	0	0	0	0	multi-exon	FALSE	canonical	3	773	junction_6	37.6592913133296	6735	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGCCTTTGGTTACTGG	NA	False	NA	28	True	ATTAAA	-22	NA	108691797	108719324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_108692054_108703147_108703209_108710365_108710419_108713344_108713419_108715121_108715192_108716471_108716556_108718563
ENSMUST00000030316.7	chr4	+	1322	8	FSM	ENSMUSG00000028581.18	ENSMUST00000030316.7	1322	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	165.980574226047	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAGAAATAGAAACGG	NA	False	NA	NA	False	GATAAA	-20	NA	130643259	130662389	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_130643355_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771
ENSMUST00000030317.14	chr4	-	1817	6	FSM	ENSMUSG00000028583.15	ENSMUST00000030317.14	1817	6	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_2	58.6153563496802	1410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGCCAACATTTGACACT	NA	False	NA	-23	True	AATAAA	-20	NA	143026134	142994000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_142994997_142995757_142995870_142997092_142997132_143000469_143000627_143002640_143002778_143025758
ENSMUST00000030326.10	chr4	-	2460	4	FSM	ENSMUSG00000028591.12	ENSMUST00000030326.10	2460	4	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_3	9.80929264637478	1249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGGTTTTGCTT	NA	False	NA	-4	True	AATAAA	-15	NA	144135034	144118243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_144119688_144121144_144121730_144122249_144122573_144134926
ENSMUST00000030340.15	chr4	-	2640	16	FSM	ENSMUSG00000028603.16	ENSMUST00000030340.15	2640	16	0	0	0	0	multi-exon	TRUE	canonical	3	305	junction_7	132.795314509043	2309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGGCTTTTACTGTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	107975729	107901035	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_107902043_107904786_107904867_107912635_107912766_107921082_107921186_107928453_107928608_107931552_107931661_107942351_107942500_107944208_107944360_107948433_107948521_107950020_107950085_107955218_107955346_107959487_107959553_107962240_107962373_107964813_107964886_107969423_107969482_107975575
ENSMUST00000030345.15	chr4	-	2372	5	FSM	ENSMUSG00000028607.17	ENSMUST00000030345.15	2372	5	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_2	11.5866302262565	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGTTCCTTTTTCCTTA	NA	False	NA	0	True	AATAAA	-18	NA	107780807	107761177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_107761761_107764117_107765423_107769837_107769945_107771460_107771542_107780511
ENSMUST00000030348.6	chr4	+	692	5	FSM	ENSMUSG00000028609.7	ENSMUST00000030348.6	692	5	0	0	0	0	multi-exon	FALSE	canonical	3	977	junction_1	47.9446295219809	16768	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGAATATGTGAATTCTC	NA	False	NA	50	True	AATAAA	-35	NA	107736951	107744621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_107737143_107738089_107738149_107740264_107740376_107742113_107742197_107744373
ENSMUST00000030360.11	chr4	-	1755	8	FSM	ENSMUSG00000028617.11	ENSMUST00000030360.11	1755	8	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_4	9.55755924781585	2412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCTTTTGAATTGCAGA	NA	False	NA	-5	True	AATAAA	-20	NA	107110729	107090710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_107091182_107092996_107093082_107096274_107096389_107096908_107096998_107098098_107098218_107100404_107100537_107104490_107104978_107110471
ENSMUST00000030361.11	chr4	+	1775	8	FSM	ENSMUSG00000028618.12	ENSMUST00000030361.11	1775	8	0	0	0	0	multi-exon	FALSE	canonical	3	1513	junction_5	112.332959889567	4437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGAGTGTTGGGCTTTCT	NA	False	NA	15	True	ATTAAA	-27	NA	107035595	107058193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_107036115_107042974_107043081_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
ENSMUST00000030365.6	chr4	-	1498	7	FSM	ENSMUSG00000028622.12	ENSMUST00000030365.6	1498	7	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_3	34.5976877840124	2228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTGTCTGTGAGATATTA	NA	False	NA	-8	True	AATAAA	-23	NA	106924065	106913070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_106913302_106914568_106914773_106917679_106917838_106919079_106919266_106921581_106921698_106921783_106921968_106923646
ENSMUST00000030375.9	chr4	-	1996	2	FSM	ENSMUSG00000028629.10	ENSMUST00000030375.9	1996	2	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	0	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGATGTTTGTGTG	NA	False	NA	-9	True	AATAAA	-22	NA	120782202	120778392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_120779894_120781707
ENSMUST00000030381.8	chr4	-	2705	19	FSM	ENSMUSG00000028633.8	ENSMUST00000030381.8	2705	19	0	0	0	0	multi-exon	TRUE	canonical	3	663	junction_8	52.1791784782653	969	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTGCTTTCTCTTGTC	NA	False	NA	-18	True	AATAAA	-14	NA	120427473	120397064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
ENSMUST00000030395.9	chr4	+	733	3	FSM	ENSMUSG00000028643.12	ENSMUST00000030395.9	733	3	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_2	4.5	3285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTTCTTGCTTTAGAG	NA	False	NA	11	True	AATAAA	-14	NA	119052502	119058495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_119052684_119053068_119053219_119058093
ENSMUST00000030401.14	chr4	-	525	3	FSM	ENSMUSG00000028648.14	ENSMUST00000030401.14	525	3	0	0	0	0	multi-exon	FALSE	canonical	3	1318	junction_2	395	32861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGCTTTTGGGTCA	1832	False	NA	-25	True	AATAAA	-17	NA	123611995	123606502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_123606720_123609656_123609875_123611905
ENSMUST00000030404.5	chr4	-	1188	10	FSM	ENSMUSG00000028651.13	ENSMUST00000030404.5	1188	10	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_9	90.3078411481501	2396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGCCTCCTGCAAGTTG	NA	False	NA	-14	True	AATAAA	-25	NA	123033744	123020907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030664_123030692_123031318_123031363_123032658_123032758_123033694
ENSMUST00000030412.11	chr4	+	2381	9	FSM	ENSMUSG00000028657.15	ENSMUST00000030412.11	2381	9	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_2	20.6579282601136	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTCTGTATAATTTTAAG	NA	False	NA	103	True	ACTAAA	-25	NA	122730034	122752871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225_122742329_122747383_122747475_122748172_122748272_122749598_122749671_122751302
ENSMUST00000030417.10	chr4	-	1448	6	FSM	ENSMUSG00000006699.18	ENSMUST00000030417.10	1448	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	708.103664727136	960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCTGGTGAAGCTTTATTC	NA	False	NA	NA	False	ATTAAA	-23	NA	137085010	137049072	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_137049931_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
ENSMUST00000030432.8	chr4	+	1418	9	FSM	ENSMUSG00000028672.14	ENSMUST00000030432.8	1418	9	0	0	0	0	multi-exon	FALSE	canonical	3	659	junction_3	79.965617611571	1536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAACGTGTGTTTATGGG	NA	False	NA	NA	False	ATTAAA	-23	NA	135673758	135689928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_135673852_135677860_135677945_135679681_135679790_135681167_135681264_135682897_135683047_135686033_135686098_135687287_135687477_135688093_135688220_135689419
ENSMUST00000030436.12	chr4	-	1919	3	FSM	ENSMUSG00000028675.13	ENSMUST00000030436.12	1919	3	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_2	18.5	982	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACATTCTTTTTATGTAAG	NA	False	NA	-2	True	AATAAA	-27	NA	135601161	135598228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135599766_135600205_135600411_135600984
ENSMUST00000030438.15	chr4	+	2493	7	FSM	ENSMUSG00000028676.18	ENSMUST00000030438.15	2493	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	609.139283470264	1638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGGATTCCTTAGTTC	4452	False	NA	14	True	AATAAA	-21	NA	135583188	135595693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_135583603_135585615_135585783_135586152_135586513_135589110_135589189_135590350_135590514_135590833_135590888_135594436
ENSMUST00000030446.15	chr4	-	1489	10	FSM	ENSMUSG00000028684.15	ENSMUST00000030446.15	1489	10	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_9	15.6331398550769	3857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCGGCTCCTTTGTTCCT	NA	False	NA	-8	True	NA	NA	NA	116851610	116847161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116849760_116849923_116850022_116850221_116850444_116850508_116850584_116850665_116850781_116850895_116851527
ENSMUST00000030451.10	chr4	-	2090	8	FSM	ENSMUSG00000028688.14	ENSMUST00000030451.10	2090	8	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	11.8252583351856	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	1939	False	NA	0	True	TTTAAA	-42	NA	116664837	116661198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
ENSMUST00000030453.5	chr4	-	2106	4	FSM	ENSMUSG00000028690.5	ENSMUST00000030453.5	2106	4	0	0	0	0	multi-exon	TRUE	canonical	3	184	junction_2	7.07106781186548	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATCATGTTTCCTTGAAC	NA	False	NA	NA	False	ACTAAA	-25	NA	116565603	116559475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_116561065_116561703_116561857_116563077_116563273_116565434
ENSMUST00000030455.15	chr4	+	1420	9	Antisense	novelGene_ENSMUSG00000028692.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11631	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCACAGTGCACCGCGCA	NA	False	NA	NA	False	NA	NA	NA	116493706	116508877	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr4_+_116493867_116494958_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
ENSMUST00000030456.14	chr4	-	2520	16	FSM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_15	334.076930594669	2260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	-7	True	AATAAA	-15	NA	116485138	116458805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528_116484627_116485086
ENSMUST00000030457.12	chr4	-	2118	14	FSM	ENSMUSG00000028693.16	ENSMUST00000030457.12	2118	14	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_9	345.747385294336	1760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCTTGTTCTGGAATT	NA	False	NA	NA	False	AATAAA	-16	NA	116484694	116458248	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
ENSMUST00000030461.5	chr4	+	2115	9	FSM	ENSMUSG00000028696.13	ENSMUST00000030461.5	2115	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	27.3698625316241	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAACAGTACAAATGGTATT	NA	False	NA	NA	False	AATAAA	-27	NA	116364748	116395440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_116364848_116367726_116368061_116372264_116372697_116377855_116378012_116381382_116381551_116386867_116387006_116387609_116387733_116389754_116389976_116394996
ENSMUST00000030471.9	chr4	+	3065	10	FSM	ENSMUSG00000028703.15	ENSMUST00000030471.9	3065	10	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_3	24.5573151707401	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCCTTCTTGATGATT	NA	False	NA	9	True	AATAAA	-17	NA	115932465	115954240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_115932805_115936585_115936673_115937745_115937817_115945643_115946767_115950068_115950330_115952073_115952239_115952329_115952429_115952988_115953112_115953339_115953416_115953519
ENSMUST00000030513.13	chr4	-	930	8	FSM	ENSMUSG00000028741.14	ENSMUST00000030513.13	930	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	364.486667262665	2331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGACTCTTTCTTTTTTTT	5974	False	NA	-12	True	AATAAA	-34	NA	139079609	139074755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_139075114_139075231_139075309_139075631_139075784_139075992_139076061_139076316_139076399_139076924_139077029_139077746_139077806_139079579
ENSMUST00000030524.14	chr4	-	2131	6	FSM	ENSMUSG00000041193.16	ENSMUST00000030524.14	2131	6	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	8.52291030106501	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCACATGTTTTGGTGTA	NA	False	NA	-5	True	AATAAA	-24	NA	138590780	138526559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_138527973_138528662_138528770_138531817_138531963_138533495_138533546_138546310_138546427_138590480
ENSMUST00000030530.6	chr4	+	1618	6	FSM	ENSMUSG00000028750.13	ENSMUST00000030530.6	1618	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.01980390271856	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGCTGGTGTCTGAAGTT	NA	False	NA	NA	False	AGTAAA	-15	NA	138452635	138471886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_138452800_138453041_138453169_138458834_138458936_138461572_138461718_138463292_138463397_138470909
ENSMUST00000030538.5	chr4	+	2120	11	FSM	ENSMUSG00000028757.5	ENSMUST00000030538.5	2120	11	0	0	0	0	multi-exon	FALSE	canonical	3	2240	junction_8	67.8427593778437	1915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGTGTTCTTTTAGTTC	NA	False	NA	37	True	NA	NA	NA	138032040	138039939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_138032350_138032465_138032577_138035553_138035641_138036660_138036765_138036900_138036996_138037494_138037589_138037913_138038063_138038151_138038300_138038720_138038842_138038950_138039058_138039144
ENSMUST00000030551.11	chr4	+	2522	12	Antisense	novelGene_ENSMUSG00000028766.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2292	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGGCCGCCCCGCCCCCGGC	244	False	NA	NA	False	NA	NA	NA	137469043	137523695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr4_+_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
ENSMUST00000030563.6	chr4	+	1551	5	FSM	ENSMUSG00000028779.17	ENSMUST00000030563.6	1551	5	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	25.1047804212664	1328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTCTTGACTGTGTGT	9278	False	NA	25	True	AATAAA	-32	NA	130001348	130021927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_130001444_130014960_130015235_130018855_130019012_130019446_130019591_130021045
ENSMUST00000030583.13	chr4	+	986	6	FSM	ENSMUSG00000028792.15	ENSMUST00000030583.13	986	6	0	0	0	0	multi-exon	FALSE	canonical	3	1917	junction_3	119.822535443046	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGCACTCATCTATGT	2869	False	NA	22	True	ATTAAA	-26	NA	128887016	128902194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826
ENSMUST00000030586.15	chr4	-	879	6	FSM	ENSMUSG00000028795.16	ENSMUST00000030586.15	879	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	6.82934843158555	977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTCGGTGCTCTCCTTGT	NA	False	NA	-2	True	ATTAAA	-16	NA	129517740	129513066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_129513240_129514249_129514273_129514475_129514670_129514776_129514944_129516392_129516581_129517606
ENSMUST00000030610.3	chr4	-	2321	5	FSM	ENSMUSG00000028807.3	ENSMUST00000030610.3	2321	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_4	9.35414346693485	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTCGTGACACTTTTA	NA	False	NA	0	True	AATAAA	-24	NA	129271909	129247420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_129248298_129251497_129251668_129253690_129254494_129263021_129263116_129271532
ENSMUST00000030622.3	chr4	+	1369	7	FSM	ENSMUSG00000028821.9	ENSMUST00000030622.3	1369	7	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_5	39.6628149390445	6302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGTCTGTAACTTAAACA	NA	False	NA	NA	False	AATAAA	-24	NA	134658208	134664859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_134658330_134658490_134658596_134661766_134661893_134662242_134662361_134662684_134662776_134663293_134663393_134664150
ENSMUST00000030626.12	chr4	-	1204	7	FSM	ENSMUSG00000028822.12	ENSMUST00000030626.12	1204	7	0	0	0	0	multi-exon	FALSE	canonical	3	544	junction_1	61.5938759582116	5034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTTCTCGTTATACCTT	NA	False	NA	-20	True	ATTAAA	-19	NA	134642335	134625159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640507_134642199
ENSMUST00000030636.11	chr4	+	1060	5	FSM	ENSMUSG00000028832.12	ENSMUST00000030636.11	1060	5	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_1	251.409029273016	36325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTCTGTTCAGGTAGT	NA	False	NA	11	True	AATAAA	-27	NA	134195630	134201154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_134195741_134197413_134197487_134197977_134198151_134200114_134200307_134200642
ENSMUST00000030642.3	chr4	+	859	6	FSM	ENSMUSG00000028837.9	ENSMUST00000030642.3	859	6	0	0	0	0	multi-exon	FALSE	canonical	3	3349	junction_3	129.102439945959	13749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGGGTTTGGCCTTA	5380	False	NA	19	True	AATAAA	-21	NA	126571422	126603507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_126571639_126577914_126578038_126580821_126580893_126599850_126600014_126601346_126601397_126603271
ENSMUST00000030644.8	chr4	-	1994	3	FSM	ENSMUSG00000028840.11	ENSMUST00000030644.8	1994	3	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_2	27	8455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTTATCTCTTGCTTT	7668	False	NA	7	True	NA	NA	NA	133972903	133970599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_133972242_133972335_133972399_133972614
ENSMUST00000030651.9	chr4	-	743	3	FSM	ENSMUSG00000028843.9	ENSMUST00000030651.9	743	3	0	0	0	0	multi-exon	FALSE	canonical	3	1437	junction_2	42.5	10926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGTGGTGTCCGGGTC	9226	False	NA	-5	True	ATTAAA	-22	NA	133856100	133854716	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_133855118_133855228_133855397_133855926
ENSMUST00000030658.13	chr4	-	1492	10	FSM	ENSMUSG00000028845.16	ENSMUST00000030658.13	1492	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_7	3.60383883116152	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCAGGCTCTTTTCTGCT	3580	False	NA	NA	False	AATAAA	-13	NA	126218992	126215915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_126216213_126216364_126216445_126216612_126216757_126216912_126217021_126217149_126217265_126217431_126217576_126218022_126218229_126218386_126218513_126218595_126218802_126218926
ENSMUST00000030661.14	chr4	+	1367	5	FSM	ENSMUSG00000028848.14	ENSMUST00000030661.14	1367	5	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_3	14.7394029729837	770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTTTTTTTAGTGTGTGT	NA	False	NA	41	True	NA	NA	NA	133311672	133319046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_133312181_133313220_133313378_133315810_133315972_133317077_133317209_133318636
ENSMUST00000030665.7	chr4	+	1316	8	Antisense	novelGene_ENSMUSG00000028851.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19027	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGAGCCGCCCGGCCGTG	8317	False	NA	NA	False	NA	NA	NA	133259852	133273307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr4_+_133260111_133260505_133260625_133260716_133260801_133261538_133261854_133262820_133262887_133262978_133263183_133268449_133268528_133273115
ENSMUST00000030675.8	chr4	+	937	8	FSM	ENSMUSG00000028861.14	ENSMUST00000030675.8	937	8	0	0	0	0	multi-exon	FALSE	canonical	3	1282	junction_7	51.9186962510439	9189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGAATGATGGAAGATGG	NA	False	NA	27	True	AATAAA	-12	NA	125940717	125949325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_125940993_125941226_125941272_125942427_125942507_125944272_125944322_125945117_125945203_125947292_125947352_125948753_125948946_125949172
ENSMUST00000030684.8	chr4	+	2366	16	FSM	ENSMUSG00000028869.14	ENSMUST00000030684.8	2366	16	0	0	0	0	multi-exon	FALSE	canonical	3	650	junction_4	51.4673575083168	1122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGGAACTGTGTTCGCTT	NA	False	NA	24	True	ATTAAA	-18	NA	124923784	124949169	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
ENSMUST00000030696.11	chr4	-	3053	9	FSM	ENSMUSG00000028878.12	ENSMUST00000030696.11	3053	9	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	24.0676130931175	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTTGTGATTCAGTTG	NA	False	NA	0	True	AATAAA	-19	NA	132649869	132626523	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132628620_132629313_132629416_132631208_132631345_132638002_132638090_132640979_132641138_132643429_132643583_132645032_132645088_132648037_132648103_132649668
ENSMUST00000030698.5	chr4	-	2934	9	FSM	ENSMUSG00000028879.5	ENSMUST00000030698.5	2934	9	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_5	25.18928343562	1151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTTGCACTTGATTGT	6093	False	NA	-4	True	AATAAA	-14	NA	132611820	132580811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132582870_132584610_132584694_132585729_132585803_132587854_132587961_132590136_132590181_132590469_132590608_132595478_132595579_132598898_132598969_132611558
ENSMUST00000030724.9	chr4	-	3475	10	FSM	ENSMUSG00000028893.9	ENSMUST00000030724.9	3475	10	0	0	0	0	multi-exon	TRUE	canonical	3	666	junction_4	59.9637750728526	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGCTAATGGGATGTT	NA	False	NA	-31	True	AATAAA	-22	NA	132237812	132219342	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132221114_132221774_132221920_132224195_132224387_132224682_132224802_132225263_132225415_132226247_132226461_132226555_132226739_132227076_132227275_132229873_132229940_132237374
ENSMUST00000030726.13	chr4	-	2278	11	FSM	ENSMUSG00000028896.14	ENSMUST00000030726.13	2278	11	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_9	136.55039362814	2520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	5481	False	NA	-14	True	AATAAA	-17	NA	132073016	132059233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132066513_132066553_132067235_132067318_132072956
ENSMUST00000030730.14	chr4	-	1130	9	FSM	ENSMUSG00000028898.16	ENSMUST00000030730.14	1130	9	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_8	39.2324801663112	2004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2316	False	NA	0	True	AATAAA	-17	NA	132056849	132039073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132053256_132053357_132055779_132055878_132056663
ENSMUST00000030734.5	chr4	+	1820	17	FSM	ENSMUSG00000028902.5	ENSMUST00000030734.5	1820	17	0	0	0	0	multi-exon	FALSE	canonical	3	1027	junction_12	104.342509913266	5269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTATGAATTTTTTGTT	NA	False	NA	51	True	AATAAA	-38	NA	124608568	124626253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120_124612213_124615816_124615900_124616670_124616810_124617463_124617533_124618551_124618620_124618867_124618976_124620771_124620842_124621866_124622032_124622111_124622223_124623251_124623343_124625163_124625220_124625980
ENSMUST00000030738.8	chr4	-	1603	8	FSM	ENSMUSG00000028907.8	ENSMUST00000030738.8	1603	8	0	0	0	0	multi-exon	FALSE	canonical	3	1259	junction_4	134.593264834372	11881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATCCTTGTGTGTGTGTG	NA	False	NA	NA	False	TATAAA	-16	NA	124587393	124571952	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_124572780_124573494_124573606_124575985_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
ENSMUST00000030742.11	chr4	+	1337	10	FSM	ENSMUSG00000028910.13	ENSMUST00000030742.11	1337	10	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_6	17.6243378301319	697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCATGCGTGTGGAGGAA	NA	False	NA	33	True	AATAAA	-33	NA	131570780	131595097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_131570990_131581026_131581125_131581895_131582028_131585067_131585212_131588071_131588175_131589086_131589190_131590228_131590303_131592367_131592429_131592566_131592640_131594757
ENSMUST00000030760.15	chr4	-	1906	8	FSM	ENSMUSG00000028923.15	ENSMUST00000030760.15	1906	8	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_3	45.6883855200484	1459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGATGGATATGTTTTT	8485	False	NA	-10	True	AATAAA	-22	NA	140805668	140793822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_140794924_140795505_140795591_140797366_140797545_140799839_140799949_140800818_140800901_140800985_140801091_140802270_140802372_140805523
ENSMUST00000030769.7	chr5	+	1785	13	FSM	ENSMUSG00000028932.9	ENSMUST00000030769.7	1785	13	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	502.901056095752	16973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGCTTCCAGATCTCTG	NA	False	NA	21	True	AATAAA	-17	NA	21990280	22008785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_21990516_21991647_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
ENSMUST00000030771.12	chr5	-	2133	17	FSM	ENSMUSG00000029014.15	ENSMUST00000030771.12	2133	17	0	0	0	0	multi-exon	FALSE	canonical	3	849	junction_11	91.8299209136107	3059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTATAGTCATCATTTAA	NA	False	NA	3	True	AATAAA	-30	NA	21990249	21962264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
ENSMUST00000030795.10	chr5	-	2569	14	FSM	ENSMUSG00000028953.11	ENSMUST00000030795.10	2569	14	0	0	0	0	multi-exon	FALSE	canonical	3	1197	junction_13	122.348082348837	946	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCCTGGGTCTCTGAGC	NA	False	NA	-29	True	AATAAA	-21	NA	24782465	24770342	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
ENSMUST00000030797.4	chr4	-	2120	5	FSM	ENSMUSG00000028955.4	ENSMUST00000030797.4	2120	5	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_4	30.2685893295343	846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCGTGTTTCTTGGAGTG	NA	False	NA	3	True	AATAAA	-22	NA	151142410	151131756	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_151133504_151134451_151134504_151135373_151135533_151140618_151140701_151142330
ENSMUST00000030799.15	chr5	-	1333	3	FSM	ENSMUSG00000028958.16	ENSMUST00000030799.15	1333	3	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	11	218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTGTGTGTTGCTTGA	NA	False	NA	4	True	ATTAAA	-26	NA	24652852	24650455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_24651272_24651531_24651951_24652754
ENSMUST00000030800.13	chr5	-	1893	10	FSM	ENSMUSG00000028959.15	ENSMUST00000030800.13	1893	10	0	0	0	0	multi-exon	FALSE	canonical	3	1073	junction_9	118.54686003725	1029	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	False	NA	-4	True	NA	NA	NA	24650285	24646036	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
ENSMUST00000030805.14	chr4	-	908	7	FSM	ENSMUSG00000028964.15	ENSMUST00000030805.14	908	7	0	0	0	0	multi-exon	FALSE	canonical	3	5402	junction_3	199.85446093484	60374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	NA	False	NA	-1	True	AATAAA	-26	NA	150994383	150981589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994239
ENSMUST00000030811.2	chr4	+	3043	4	FSM	ENSMUSG00000028967.11	ENSMUST00000030811.2	3043	4	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_2	19.3275853524323	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATGTGTCTTGTCTAAA	3781	False	NA	NA	False	AATAAA	-28	NA	150939529	150953344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_150939729_150949531_150949727_150949820_150949898_150950772
ENSMUST00000030814.11	chr5	-	2059	12	FSM	ENSMUSG00000028969.11	ENSMUST00000030814.11	2059	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	52.4982486917657	1493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGGAAGCCAACCATGCC	NA	False	NA	-11	True	TATAAA	-5	NA	24628528	24623238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_24624461_24624597_24624679_24624780_24624842_24625256_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627387_24627495_24627557_24627645_24627714_24627795_24627885_24628446
ENSMUST00000030816.4	chr4	+	2457	6	FSM	ENSMUSG00000028974.14	ENSMUST00000030816.4	2457	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	2.13541565040626	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGCTGCCTTTGTTTGTC	NA	False	NA	6	True	AATAAA	-16	NA	149188602	149205104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228_149202381_149203535
ENSMUST00000030841.10	chr5	+	2966	11	FSM	ENSMUSG00000028986.13	ENSMUST00000030841.10	2966	11	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	4.51220566907139	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGATTTGCTTTGTTTA	NA	False	NA	6	True	ATTAAA	-13	NA	24305602	24365783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_24305873_24331819_24331923_24332666_24332761_24332977_24333103_24339961_24340138_24343303_24343479_24346148_24346292_24354122_24354364_24361887_24362090_24363536_24363635_24364444
ENSMUST00000030842.8	chr4	+	1817	7	FSM	ENSMUSG00000028990.14	ENSMUST00000030842.8	1817	7	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_3	14.9517743280039	1150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569750	149581125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
ENSMUST00000030845.13	chr4	-	1238	5	FSM	ENSMUSG00000028992.14	ENSMUST00000030845.13	1238	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	4.60298815988049	242	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTTAAATCAATTTTTCT	1652	False	NA	34	True	ACTAAA	-20	NA	149569655	149553015	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_149553669_149554096_149554240_149557741_149557926_149558884_149559053_149569565
ENSMUST00000030851.7	chr5	-	1125	3	FSM	ENSMUSG00000028998.7	ENSMUST00000030851.7	1125	3	0	0	0	0	multi-exon	FALSE	canonical	3	3790	junction_2	61.5	71978	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATTAGTGTAGTCCTAG	NA	False	NA	NA	False	AATAAA	-15	NA	24049159	24043941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_24044827_24046707_24046757_24048968
ENSMUST00000030872.12	chr5	-	2103	14	FSM	ENSMUSG00000029012.12	ENSMUST00000030872.12	2103	14	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_10	41.6678895284064	1071	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTAGCTGTGTTCTTTGGT	NA	False	NA	-7	True	AATAAA	-14	NA	22755373	22691486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
ENSMUST00000030882.12	chr5	+	1615	13	FSM	ENSMUSG00000029017.14	ENSMUST00000030882.12	1615	13	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_5	33.8430815184827	2132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTAGTCTGTTATATGT	NA	False	NA	16	True	AATAAA	-18	NA	21942138	21962150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_21942275_21943866_21944008_21945037_21945125_21945482_21945613_21947755_21947955_21948376_21948457_21950975_21951089_21951975_21952120_21953746_21953908_21961399_21961486_21961584_21961674_21961812_21961889_21961977
ENSMUST00000030886.15	chr4	-	1813	10	FSM	ENSMUSG00000029022.19	ENSMUST00000030886.15	1813	10	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_4	26.1538657058192	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAAGCCTCTCTTTTTTTT	NA	False	NA	1	True	AATAAA	-29	NA	147953176	147945234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
ENSMUST00000030893.3	chr4	-	2093	7	FSM	ENSMUSG00000029027.10	ENSMUST00000030893.3	2093	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	5.79271573232759	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATGTCAAAATTTTTTGA	NA	False	NA	NA	False	AATAAA	-15	NA	154059583	154048905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_154050071_154053549_154053651_154054397_154054569_154056037_154056118_154057236_154057426_154059025_154059153_154059323
ENSMUST00000030895.12	chr4	+	1598	12	FSM	ENSMUSG00000029029.15	ENSMUST00000030895.12	1598	12	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	6.78354840224641	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAACAGTGGTGGTTGTTT	NA	False	NA	25	True	TATAAA	-30	NA	154226828	154241273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_154226971_154229699_154229853_154230947_154231065_154233166_154233240_154236084_154236189_154236794_154236882_154237017_154237153_154237249_154237328_154238991_154239098_154239697_154239824_154240557_154240750_154240988
ENSMUST00000030901.9	chr4	+	2368	17	FSM	ENSMUSG00000029034.10	ENSMUST00000030901.9	2368	17	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_2	75.0722308430354	1360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCACTGTGTACCGTCA	9960	False	NA	21	True	AATAAA	-21	NA	155954002	155973560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
ENSMUST00000030903.12	chr4	-	2413	16	FSM	ENSMUSG00000029036.19	ENSMUST00000030903.12	2413	16	0	0	0	0	multi-exon	FALSE	canonical	3	684	junction_5	53.203759265676	809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGCTTGATGGCTGAGG	NA	False	NA	-9	True	AATAAA	-19	NA	155845550	155825097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835056_155835324_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517_155840620_155841548_155841626_155845258
ENSMUST00000030914.4	chr4	-	1596	7	FSM	ENSMUSG00000029048.4	ENSMUST00000030914.4	1596	7	0	0	0	0	multi-exon	FALSE	canonical	3	1097	junction_6	206.502959354635	4900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTCGTCTACACGAGTC	NA	False	NA	-13	True	ATTAAA	-22	NA	155170830	155158566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155170661
ENSMUST00000030915.11	chr4	+	1659	14	FSM	ENSMUSG00000029049.15	ENSMUST00000030915.11	1659	14	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_9	6.41927570616156	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGCACCTTTTGTGGG	NA	False	NA	17	True	AATAAA	-18	NA	155171033	155229962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155171139_155171877_155171950_155173942_155174042_155175339_155175451_155176725_155176817_155177518_155177607_155185722_155185820_155186546_155186658_155195384_155195509_155195873_155196047_155213135_155213258_155213339_155213423_155226858_155226903_155229623
ENSMUST00000030935.10	chr4	-	883	7	FSM	ENSMUSG00000029059.10	ENSMUST00000030935.10	883	7	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_6	8.17856276425687	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCGTCCTTCCCACAGCA	NA	False	NA	-6	True	ATTAAA	-45	NA	154983567	154980855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_154981055_154981496_154981616_154981805_154981882_154981962_154982027_154982584_154982637_154982932_154983138_154983399
ENSMUST00000030942.13	chr4	+	764	4	FSM	ENSMUSG00000029066.13	ENSMUST00000030942.13	764	4	0	0	0	0	multi-exon	FALSE	canonical	3	1236	junction_3	66.873013989202	8590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGAGTTATTTCCTGGC	NA	False	NA	22	True	AATAAA	-18	NA	155887977	155893288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155888200_155888289_155888401_155891364_155891443_155892935
ENSMUST00000030968.7	chr5	+	1616	9	FSM	ENSMUSG00000029089.9	ENSMUST00000030968.7	1616	9	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_5	8.92941067484299	605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTAGTTCTACATATAT	NA	False	NA	13	True	ATTAAA	-21	NA	48529670	48546187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48534416_48534508_48536671_48536807_48537465_48537574_48539128_48539210_48545444
ENSMUST00000030993.8	chr5	-	2580	11	FSM	ENSMUSG00000029111.8	ENSMUST00000030993.8	2580	11	0	0	0	0	multi-exon	FALSE	canonical	3	561	junction_5	32.3241395863834	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTCCACTTTAAATGCT	NA	False	NA	0	True	AATAAA	-29	NA	34093757	34055259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
ENSMUST00000031008.13	chr5	+	1471	11	FSM	ENSMUSG00000029125.15	ENSMUST00000031008.13	1471	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_10	31.04834939252	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTATTGCAGTCAGTGAG	NA	False	NA	13	True	AATAAA	-13	NA	38196576	38294161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_38196844_38249856_38249925_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293698
ENSMUST00000031011.12	chr5	-	1635	7	FSM	ENSMUSG00000029128.13	ENSMUST00000031011.12	1635	7	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_3	45.374980869295	1139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGATTTTCATT	NA	False	NA	-4	True	AATAAA	-14	NA	41865497	41782318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_41783206_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
ENSMUST00000031018.10	chr5	-	1042	8	FSM	ENSMUSG00000029136.10	ENSMUST00000031018.10	1042	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	7.57816411992848	349	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGTGTGGCTACTCATC	NA	False	NA	-31	True	AATAAA	-23	NA	31854971	31781782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31782001_31805064_31805254_31809152_31809245_31817250_31817416_31823062_31823126_31824204_31824269_31830656_31830790_31854853
ENSMUST00000031024.14	chr5	+	478	4	FSM	ENSMUSG00000106918.4	ENSMUST00000031024.14	478	4	0	0	0	0	multi-exon	FALSE	canonical	3	1273	junction_1	440.713814926043	13016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTCTTAGAGGTAT	NA	False	NA	19	True	AATAAA	-22	NA	31771282	31779988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31771367_31771946_31771966_31773724_31773832_31779720
ENSMUST00000031029.15	chr5	+	2018	15	FSM	ENSMUSG00000029146.15	ENSMUST00000031029.15	2018	15	0	0	0	0	multi-exon	TRUE	canonical	3	351	junction_8	24.4791664857432	1344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGTTCCCTCTCACTG	NA	False	NA	21	True	ATTAAA	-21	NA	31350570	31356244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31350810_31351212_31351288_31352139_31352258_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
ENSMUST00000031034.12	chr5	+	2203	18	FSM	ENSMUSG00000029148.16	ENSMUST00000031034.12	2203	18	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_13	30.9676692663879	710	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTGTGCTTGCGGC	NA	False	NA	33	True	AATAAA	-21	NA	31398207	31408910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31398347_31401106_31401336_31401509_31401633_31401801_31401904_31402220_31402311_31402706_31402748_31403094_31403190_31404685_31404770_31405027_31405087_31405241_31405341_31406892_31407026_31407232_31407339_31407433_31407485_31407573_31407710_31407887_31407942_31408024_31408089_31408235_31408292_31408368
ENSMUST00000031037.14	chr5	-	2089	8	FSM	ENSMUSG00000029151.15	ENSMUST00000031037.14	2089	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	6.02037357305871	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCAGTCCAATTCCTC	3744	False	NA	0	True	AATAAA	-19	NA	31250959	31243449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31244263_31245300_31245436_31245648_31245755_31245951_31246151_31246662_31246817_31246897_31247045_31247399_31247582_31250606
ENSMUST00000031038.11	chr5	+	1523	9	FSM	ENSMUSG00000029152.14	ENSMUST00000031038.11	1523	9	0	0	0	0	multi-exon	FALSE	canonical	3	746	junction_1	106.002063659157	6557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGTCTTTTTTTTAAAG	NA	False	NA	14	True	AATACA	-7	NA	73450134	73471412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
ENSMUST00000031061.12	chr5	-	3010	14	FSM	ENSMUSG00000029169.12	ENSMUST00000031061.12	3010	14	0	0	0	0	multi-exon	FALSE	canonical	3	749	junction_10	48.0023421519305	954	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTCTGTATCTTTTATT	NA	False	NA	2	True	AATAAA	-27	NA	52347856	52307544	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314920_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
ENSMUST00000031073.10	chr5	+	993	7	FSM	ENSMUSG00000029177.10	ENSMUST00000031073.10	993	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	786.892358161733	1192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTGGCAGTCCCGCCATA	9263	False	NA	40	True	AATAAA	-24	NA	30824317	30831753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_30824458_30826342_30826397_30827081_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
ENSMUST00000031103.14	chr5	-	2550	12	FSM	ENSMUSG00000029201.15	ENSMUST00000031103.14	2550	12	0	0	0	0	multi-exon	FALSE	canonical	3	385	junction_10	43.2746370854342	773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCTTCAATTTACGTATG	NA	False	NA	-13	True	AATAAA	-22	NA	65593292	65570563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_65571407_65574167_65574279_65574363_65574456_65574853_65574988_65575820_65575952_65577591_65577687_65579977_65580126_65580503_65580702_65580792_65580994_65581384_65581487_65584758_65584928_65592966
ENSMUST00000031117.13	chr5	-	1894	7	FSM	ENSMUSG00000029209.16	ENSMUST00000031117.13	1894	7	0	0	0	0	multi-exon	TRUE	canonical	3	104	junction_4	11.5998084275369	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTATCTCATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-45	NA	69749683	69732343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_69733297_69735320_69735496_69736850_69737036_69742316_69742500_69743807_69743910_69747003_69747167_69749550
ENSMUST00000031131.11	chr5	+	1177	9	FSM	ENSMUSG00000029223.13	ENSMUST00000031131.11	1177	9	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_4	35.1227757302865	6741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTTATTTTCTCTT	NA	False	NA	33	True	AATAAA	-22	NA	66833433	66844577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_66833666_66833778_66833791_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
ENSMUST00000031143.13	chr5	+	1747	6	FSM	ENSMUSG00000029233.16	ENSMUST00000031143.13	1747	6	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_4	4.14728827066554	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCCTGGACTGGGTAACAT	NA	False	NA	15	True	AATAAA	-27	NA	76288117	76303326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_76288396_76295532_76295676_76297049_76297086_76297599_76297798_76301370_76301506_76302369
ENSMUST00000031145.7	chr5	-	1181	6	FSM	ENSMUSG00000029235.15	ENSMUST00000031145.7	1181	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	18.0554700852678	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGTGCACCATGTGT	NA	False	NA	NA	False	AATAAA	-31	NA	76479003	76459973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_76460446_76465647_76465857_76466973_76467118_76472152_76472244_76472839_76472961_76478859
ENSMUST00000031160.16	chr5	+	2482	9	FSM	ENSMUSG00000029247.18	ENSMUST00000031160.16	2482	9	0	0	0	0	multi-exon	FALSE	canonical	3	3017	junction_4	215.03720608304	6759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	286	False	NA	15	True	ATTAAA	-18	NA	77099153	77115352	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ENSMUST00000031170.10	chr5	-	3192	19	FSM	ENSMUSG00000029253.13	ENSMUST00000031170.10	3192	19	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_10	17.8879399334224	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCATCTTGTCTGTGGTG	NA	False	NA	-6	True	ATTAAA	-17	NA	86213442	86159882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_86160187_86161278_86161370_86164060_86164216_86166247_86166344_86168687_86168811_86170237_86170343_86176992_86177050_86180247_86180331_86181423_86181571_86182089_86182370_86183274_86183449_86185170_86185773_86193150_86193361_86194237_86194440_86195442_86195543_86200029_86200101_86206013_86206106_86209862_86209907_86213186
ENSMUST00000031190.5	chr5	+	3085	3	FSM	ENSMUSG00000029265.5	ENSMUST00000031190.5	3085	3	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	9	317	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTTTATATTTAATGAT	NA	False	NA	NA	False	AATAAA	-21	NA	108416762	108428392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_108417676_108423434_108423599_108426384
ENSMUST00000031243.15	chr5	+	1410	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	0	0	0	0	multi-exon	FALSE	canonical	3	5474	junction_3	341.773032223953	20829	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	31	True	AATAAA	-18	NA	104582983	104588916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ENSMUST00000031250.14	chr5	+	1488	8	FSM	ENSMUSG00000029310.14	ENSMUST00000031250.14	1488	8	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_1	16.2468207250979	1035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTTCAAGTTCTCCC	NA	False	NA	20	True	AATAAA	-23	NA	104194734	104213245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_104195013_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
ENSMUST00000031268.8	chr5	+	1420	7	FSM	ENSMUSG00000029326.14	ENSMUST00000031268.8	1420	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_6	172.72618021983	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTTTCATACAGACGT	NA	False	NA	15	True	AATAAA	-15	NA	100187902	100216619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657_100215801_100216154
ENSMUST00000031287.12	chr5	+	1835	7	FSM	ENSMUSG00000029344.16	ENSMUST00000031287.12	1835	7	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	59.7847992571876	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTAGCTTTCTTCTCTT	NA	False	NA	27	True	AATAAA	-37	NA	112424556	112463227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_112424638_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ENSMUST00000031311.10	chr5	+	3078	7	FSM	ENSMUSG00000029366.11	ENSMUST00000031311.10	3078	7	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_6	17.3052657368277	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGACTTTAAAATTTTC	NA	False	NA	27	True	AATAAA	-24	NA	88912854	88931140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_88913206_88917462_88917579_88920488_88920683_88921940_88922089_88924715_88924832_88926220_88926312_88929078
ENSMUST00000031347.8	chr5	-	1391	4	FSM	ENSMUSG00000029401.9	ENSMUST00000031347.8	1391	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	3.55902608401044	241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAACGCATGTGTATCCAA	NA	False	NA	48	True	AATAAA	-24	NA	124616429	124601327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_124601875_124606649_124606755_124607760_124607913_124615842
ENSMUST00000031349.9	chr5	+	1115	2	FSM	ENSMUSG00000029402.9	ENSMUST00000031349.9	1115	2	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	0	674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTGAGGTGGGGTTTGT	2220	False	NA	10	True	AATAAA	-24	NA	124621196	124629187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124621310_124628185
ENSMUST00000031351.11	chr5	+	1192	5	FSM	ENSMUSG00000029404.16	ENSMUST00000031351.11	1192	5	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_1	46.874833333037	2506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	24	True	ATTAAA	-17	NA	124254161	124256259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
ENSMUST00000031383.14	chr5	+	2377	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	0	0	0	0	multi-exon	FALSE	canonical	3	11744	junction_1	1335.32560531962	64375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGAGTCATCTCTAGT	342	False	NA	21	True	AATATA	-23	NA	129097132	129101387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ENSMUST00000031385.7	chr5	-	681	5	FSM	ENSMUSG00000029433.17	ENSMUST00000031385.7	681	5	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_2	56.3493566955294	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCATAACATTATTTCCTT	8965	False	NA	NA	False	NA	NA	NA	123662196	123655648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
ENSMUST00000031419.6	chr5	-	1388	7	FSM	ENSMUSG00000029463.6	ENSMUST00000031419.6	1388	7	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_4	23.7235232534199	1385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAATTTTAAATTATCTTT	NA	False	NA	-20	True	ATTAAA	-21	NA	122510427	122502642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_122502983_122504376_122504460_122505410_122505583_122505661_122505792_122507579_122507702_122508577_122508637_122509945
ENSMUST00000031420.11	chr5	+	1592	8	FSM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_4	35.5154464814327	2016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTGAGGTTTGTAAA	8039	False	NA	NA	False	AATAAA	-42	NA	122510513	122520965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519369_122519460_122519558_122520110_122520240_122520323
ENSMUST00000031426.14	chr5	-	2950	19	FSM	ENSMUSG00000029469.15	ENSMUST00000031426.14	2950	19	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	9.90510530540242	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTCTTTTTACTTCATT	1243	False	NA	NA	False	ATTAAA	-20	NA	122752581	122688266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_122689267_122693559_122693606_122697217_122697304_122697759_122697832_122698721_122698809_122705323_122705414_122706973_122707103_122710702_122710853_122729142_122729290_122731112_122731209_122732587_122732752_122738502_122738588_122740330_122740442_122740747_122740814_122745030_122745121_122747235_122747417_122748140_122748245_122749005_122749171_122752500
ENSMUST00000031435.14	chr5	-	3532	12	FSM	ENSMUSG00000029475.18	ENSMUST00000031435.14	3532	12	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_11	40.2726246663991	284	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACACTGTGTTTGAGGGT	8594	False	NA	NA	False	TATAAA	-21	NA	123038418	123008730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123038211
ENSMUST00000031445.5	chr5	+	3239	18	FSM	ENSMUSG00000029482.5	ENSMUST00000031445.5	3239	18	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_4	14.7470013373196	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTACGCGTGTGTTTCTC	NA	False	NA	10	True	AATAAA	-27	NA	125552877	125594474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_125553174_125559893_125559998_125561600_125561722_125566846_125566961_125571970_125572069_125580246_125580362_125580612_125580695_125583212_125583361_125585740_125585822_125586842_125586968_125588703_125588769_125588909_125589033_125589688_125589803_125590165_125590292_125590982_125591053_125591232_125591292_125591991_125592195_125593279
ENSMUST00000031472.12	chr5	-	1041	5	FSM	ENSMUSG00000029499.12	ENSMUST00000031472.12	1041	5	0	0	0	0	multi-exon	FALSE	canonical	3	476	junction_4	29.6004645233821	3267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTTTCTCAGCACAGTT	NA	False	NA	4	True	AATAAA	-28	NA	110434052	110422147	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_110422495_110425520_110425641_110429062_110429226_110431511_110431620_110433749
ENSMUST00000031481.13	chr5	-	1563	6	FSM	ENSMUSG00000029507.17	ENSMUST00000031481.13	1563	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	204.990146104636	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110928525	110921532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928419
ENSMUST00000031483.15	chr5	-	1814	6	FSM	ENSMUSG00000029507.17	ENSMUST00000031483.15	1814	6	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_5	100.055184773204	666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110928462	110921532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928105
ENSMUST00000031486.14	chr5	-	2089	7	FSM	ENSMUSG00000029513.15	ENSMUST00000031486.14	2089	7	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_6	10.0788557551606	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGACTCGGCACATTTT	NA	False	NA	0	True	AATAAA	-25	NA	116162521	116151644	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541_116159706_116162149
ENSMUST00000031495.11	chr5	+	557	4	FSM	ENSMUSG00000029522.13	ENSMUST00000031495.11	557	4	0	0	0	0	multi-exon	FALSE	canonical	3	2118	junction_3	35.2640830811685	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGTGATTGTTATCTC	NA	False	NA	30	True	AATAAA	-21	NA	115604324	115612781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_115604380_115608840_115609001_115610051_115610180_115612567
ENSMUST00000031508.5	chr5	+	1088	2	FSM	ENSMUSG00000029535.5	ENSMUST00000031508.5	1088	2	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_1	0	1626	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCACTTTATTGAGCAT	2414	False	NA	44	True	AATAAA	-36	NA	115479283	115481628	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_115479477_115480733
ENSMUST00000031519.14	chr5	-	1370	7	FSM	ENSMUSG00000029544.17	ENSMUST00000031519.14	1370	7	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_6	80.5826008239716	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	9907	False	NA	-1	True	AATAAA	-20	NA	115324367	115306747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115318850_115319031_115324070
ENSMUST00000031524.11	chr5	-	1870	10	FSM	ENSMUSG00000029545.14	ENSMUST00000031524.11	1870	10	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_3	13.7822573362984	3898	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGCCTGTGTCTGTCTT	9774	False	NA	-4	True	AATAAA	-18	NA	115257405	115248357	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_115249066_115249152_115249210_115249377_115249474_115249695_115249834_115249915_115250087_115250298_115250451_115250823_115250936_115251122_115251273_115255623_115255788_115257283
ENSMUST00000031531.14	chr5	-	883	3	FSM	ENSMUSG00000029551.14	ENSMUST00000031531.14	883	3	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_2	27	2515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGAGACATCATGGGCAT	7313	False	NA	-12	True	AATAAA	-31	NA	139812640	139809346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_139809829_139811882_139812120_139812476
ENSMUST00000031534.9	chr5	-	2640	18	FSM	ENSMUSG00000029554.16	ENSMUST00000031534.9	2640	18	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_17	17.902078903461	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTCCAAGGCTCCAAGC	NA	False	NA	1	True	AATAAA	-27	NA	140307307	139994443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_139995030_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523_140118581_140129674_140129816_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300908_140307261
ENSMUST00000031536.8	chr5	-	1443	3	FSM	ENSMUSG00000029557.8	ENSMUST00000031536.8	1443	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	12	503	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTACTTGTCTGTTT	3901	False	NA	-5	True	AAAACA	-37	NA	140317653	140313428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_140314536_140316734_140317025_140317607
ENSMUST00000031539.12	chr5	-	2627	11	FSM	ENSMUSG00000029560.13	ENSMUST00000031539.12	2627	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_10	18.7160359050735	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGGTTTCCACGCTGCA	7720	False	NA	-12	True	AATAAA	-14	NA	140375017	140326057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946_140346138_140374902
ENSMUST00000031540.11	chr5	+	2125	7	FSM	ENSMUSG00000041827.16	ENSMUST00000031540.11	2125	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.62167810425171	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGTGGTCCTCATTTGT	7834	False	NA	3	True	NA	NA	NA	115061298	115075971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_115061392_115061468_115061669_115066081_115066365_115067898_115068063_115070781_115071024_115073979_115074128_115074976
ENSMUST00000031560.14	chr5	-	3020	9	FSM	ENSMUSG00000029575.18	ENSMUST00000031560.14	3020	9	0	0	0	0	multi-exon	TRUE	canonical	3	162	junction_1	19.5604032422647	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTTGTGGCTCATCTCTC	NA	False	NA	2	True	AATAAA	-36	NA	114582121	114569094	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_114571420_114573338_114573399_114574539_114574605_114574770_114574869_114575110_114575184_114575878_114575937_114576581_114576676_114580821_114580884_114581936
ENSMUST00000031565.15	chr5	+	2675	5	FSM	ENSMUSG00000029581.15	ENSMUST00000031565.15	2675	5	0	0	0	0	multi-exon	FALSE	canonical	3	2634	junction_2	132.012310032057	772	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGTGTGTGTCTCAGGGG	NA	False	NA	18	True	AATAAA	-18	NA	142946097	142958940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_142947036_142955659_142955817_142955921_142956044_142956272_142956441_142957650
ENSMUST00000031587.13	chr5	+	1985	7	FSM	ENSMUSG00000029591.15	ENSMUST00000031587.13	1985	7	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_1	117.255656106172	3482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGCCGACTATTCTTCA	NA	False	NA	23	True	AATAAA	-19	NA	114268446	114277384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_114268687_114269379_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
ENSMUST00000031599.9	chr5	-	1573	3	FSM	ENSMUSG00000029600.11	ENSMUST00000031599.9	1573	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	1.5	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGTAGTGTGTTACTTTTT	6315	False	NA	NA	False	ATTAAA	-20	NA	120750654	120747122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_120748028_120749442_120749795_120750338
ENSMUST00000031613.11	chr5	-	1185	4	FSM	ENSMUSG00000029610.14	ENSMUST00000031613.11	1185	4	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_3	88.5023540176569	2718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTATTTTATTTTAA	NA	False	NA	-18	True	AATAAA	-16	NA	143846657	143839521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_143840009_143841382_143841615_143843366_143843574_143846398
ENSMUST00000031617.13	chr5	+	1270	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	0	0	0	0	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	118772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTGACTATAGACTCA	NA	False	NA	NA	False	AATAGA	-23	NA	121342543	121347304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
ENSMUST00000031621.11	chr5	-	1769	15	FSM	ENSMUSG00000029617.11	ENSMUST00000031621.11	1769	15	0	0	0	0	multi-exon	FALSE	canonical	3	726	junction_9	71.895615943093	1151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTCCTGTTGAGTCCT	NA	False	NA	1	True	AATAAA	-22	NA	143951671	143924726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_143925068_143927455_143927584_143928289_143928449_143929326_143929445_143930043_143930078_143934980_143935093_143935361_143935424_143938194_143938277_143940860_143941037_143946020_143946105_143947848_143947897_143948269_143948348_143949620_143949715_143949811_143949910_143951516
ENSMUST00000031625.15	chr5	+	1632	10	FSM	ENSMUSG00000029621.15	ENSMUST00000031625.15	1632	10	0	0	0	0	multi-exon	TRUE	canonical	3	332	junction_5	31.8084545015595	2955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTTTTCTTTATACTCT	NA	False	NA	22	True	ATTAAA	-23	NA	145020639	145045571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034025_145034134_145037866_145038080_145041251_145041328_145041507_145041702_145043854_145043946_145045186
ENSMUST00000031628.10	chr5	-	3087	9	FSM	ENSMUSG00000029624.11	ENSMUST00000031628.10	3087	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_5	16.4350045634311	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGTGCGTCTCATATATA	NA	False	NA	2	True	AATAAA	-30	NA	145103918	145084323	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_145085316_145088095_145088279_145088927_145089045_145091483_145092189_145095549_145095652_145096284_145096504_145097848_145097990_145101870_145102344_145103763
ENSMUST00000031637.8	chr6	-	468	4	FSM	ENSMUSG00000029632.8	ENSMUST00000031637.8	468	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4249.68315158776	19353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCGTGTCACTATTTAATG	2	True	NA	-12	True	AATAAA	-14	NA	11907449	11900371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_11900591_11905200_11905262_11906018_11906080_11907322
ENSMUST00000031646.8	chr5	+	1126	4	FSM	ENSMUSG00000029641.9	ENSMUST00000031646.8	1126	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0.816496580927726	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTGTTTTCTGAATGT	NA	False	NA	NA	False	ATTAAA	-18	NA	146781880	146784536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_146782151_146782469_146782527_146782649_146782730_146783817
ENSMUST00000031692.12	chr5	+	1758	6	FSM	ENSMUSG00000029681.13	ENSMUST00000031692.12	1758	6	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_5	29.6445610525776	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACAGCTTCTTTCTACA	8669	False	NA	29	True	ATTAAA	-24	NA	135197136	135210709	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_135197453_135199940_135200017_135205982_135206080_135208803_135208975_135209369_135209450_135209691
ENSMUST00000031697.9	chr6	+	3161	22	FSM	ENSMUSG00000029686.16	ENSMUST00000031697.9	3161	22	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_1	65.0983905600956	570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTATATTCCCATTGTCTT	NA	False	NA	19	True	AATAAA	-20	NA	47431253	47503073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_47431418_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
ENSMUST00000031728.5	chr5	-	881	2	FSM	ENSMUSG00000029715.6	ENSMUST00000031728.5	881	2	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_1	0	3072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGGCTTCGAATGGCCTC	1639	False	NA	-33	True	AATAAA	-19	NA	137500780	137499700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_137500342_137500540
ENSMUST00000031731.14	chr5	-	1626	9	FSM	ENSMUSG00000029718.15	ENSMUST00000031731.14	1626	9	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_8	116.165560731225	1300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGTGTCTGAGGTTCTGT	4023	False	NA	-2	True	AATAAA	-21	NA	137609749	137603364	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658_137608768_137609498
ENSMUST00000031739.6	chr5	+	956	4	FSM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_1	53.8970211504206	1466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777165	137778372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_137777484_137777563_137777808_137777887_137778025_137778115
ENSMUST00000031766.12	chr6	+	2001	12	Antisense	novelGene_ENSMUSG00000029752.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18699	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCAGGGGCGTGGCCCGCAG	NA	False	NA	NA	False	NA	NA	NA	7675168	7693254	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr6_+_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
ENSMUST00000031779.17	chr6	+	3229	7	FSM	ENSMUSG00000029767.17	ENSMUST00000031779.17	3229	7	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_2	154.523730647863	1296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTGTCTTTTATTCTC	NA	False	NA	118	True	AATAAA	-22	NA	29348104	29376674	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_29348208_29356469_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29372469_29372670_29374397
ENSMUST00000031788.9	chr6	-	1825	8	FSM	ENSMUSG00000029776.12	ENSMUST00000031788.9	1825	8	0	0	0	0	multi-exon	FALSE	canonical	3	833	junction_5	85.7178570684555	2420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGAGCTTTTTGTTTT	2839	False	NA	-1	True	AATAAA	-20	NA	52617374	52523212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_52524048_52525799_52525957_52533422_52533500_52534763_52534898_52596961_52597084_52599835_52599946_52607173_52607335_52617145
ENSMUST00000031793.8	chr6	-	1676	9	FSM	ENSMUSG00000029780.15	ENSMUST00000031793.8	1676	9	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_8	16.5486970786222	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTTGTCCAGATCATAT	1204	False	NA	0	True	AATAAA	-26	NA	56900917	56859384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56900656
ENSMUST00000031795.8	chr6	+	3009	10	FSM	ENSMUSG00000029781.8	ENSMUST00000031795.8	3009	10	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_6	57.9369602069757	3312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTGGCTTTATGGTATT	NA	False	NA	36	True	CATAAA	-14	NA	56809043	56856343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_56809413_56826622_56826769_56827547_56827738_56828346_56828493_56833217_56833408_56837640_56837787_56845704_56845892_56850351_56850498_56852653_56852818_56855018
ENSMUST00000031810.15	chr6	-	3447	11	FSM	ENSMUSG00000029790.17	ENSMUST00000031810.15	3447	11	0	0	0	0	multi-exon	TRUE	canonical	3	75	junction_8	9.18095855561934	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCGTTTGCTATTAATG	NA	False	NA	0	True	ATTAAA	-16	NA	30693748	30653455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_30655850_30656477_30656694_30657296_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
ENSMUST00000031838.9	chr6	-	4345	15	FSM	ENSMUSG00000029814.11	ENSMUST00000031838.9	4345	15	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_14	48.9016610043012	836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAGCTTCTGTAGTATGT	NA	False	NA	-24	True	AATAAA	-15	NA	49191891	49062156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49094085_49094368_49111628_49111693_49111780_49111833_49145403_49145453_49190200_49190262_49191230
ENSMUST00000031841.9	chr6	-	1799	8	FSM	ENSMUSG00000029817.12	ENSMUST00000031841.9	1799	8	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_7	100.796420409392	1098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	4593	False	NA	-8	True	AATAAA	-11	NA	49240964	49220861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
ENSMUST00000031897.8	chr6	+	930	8	FSM	ENSMUSG00000029864.8	ENSMUST00000031897.8	930	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	4.42165358301205	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAAGCATTTCTGGGTC	NA	False	NA	2	True	AATAAA	-13	NA	42222868	42227375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_42223028_42223483_42223566_42223744_42223874_42224417_42224519_42224667_42224704_42226312_42226430_42226772_42226867_42227163
ENSMUST00000031971.13	chr6	+	1063	6	FSM	ENSMUSG00000029911.15	ENSMUST00000031971.13	1063	6	0	0	0	0	multi-exon	FALSE	canonical	3	1713	junction_1	476.592320542411	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGACATGTTTTATTATTT	NA	False	NA	NA	False	NA	NA	NA	40448348	40455521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_40448394_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856
ENSMUST00000031976.14	chr6	+	2155	15	FSM	ENSMUSG00000029913.15	ENSMUST00000031976.14	2155	15	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	23.473389188611	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGCTCTTGACTTTCTT	NA	False	NA	NA	False	ATTAAA	-14	NA	65755971	65913360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_65756178_65771283_65771368_65808232_65808356_65832932_65833108_65834626_65834802_65836340_65836463_65839898_65839979_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
ENSMUST00000031978.9	chr6	-	1107	3	FSM	ENSMUSG00000029918.10	ENSMUST00000031978.9	1107	3	0	0	0	0	multi-exon	FALSE	canonical	3	1131	junction_2	267.5	10906	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTTTTGAGACAGTGGA	NA	False	NA	NA	False	AATAAA	-19	NA	39787922	39778737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_39779479_39782304_39782546_39787797
ENSMUST00000031985.13	chr6	-	3046	8	FSM	ENSMUSG00000029922.16	ENSMUST00000031985.13	3046	8	0	0	0	0	multi-exon	FALSE	canonical	3	1453	junction_3	1193.53149458715	3639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTTGTGTGATGACCT	NA	False	NA	4	True	AATAAA	-24	NA	39397396	39374737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
ENSMUST00000032078.9	chr6	+	2441	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	0	0	0	0	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	57788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCTGCTGTGATGG	4610	False	NA	16	True	AGTAAA	-18	NA	85428495	85445457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
ENSMUST00000032080.9	chr6	-	1038	5	FSM	ENSMUSG00000030008.10	ENSMUST00000032080.9	1038	5	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_4	18.9786063766547	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGGTTTGTGCCTGTGTCC	NA	False	NA	NA	False	AATAAA	-16	NA	85428265	85423791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_85424280_85424502_85424671_85424917_85425028_85425472_85425574_85428094
ENSMUST00000032111.11	chr6	-	1419	5	FSM	ENSMUSG00000030035.15	ENSMUST00000032111.11	1419	5	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_4	18.4390889145858	1005	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGATTCTGGGTAGAG	NA	False	NA	-7	True	ATTAAA	-17	NA	83098540	83096024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83097752_83097858_83098183
ENSMUST00000032130.8	chr6	-	1889	11	FSM	ENSMUSG00000030051.11	ENSMUST00000032130.8	1889	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	20.4511613362176	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACCTTTGATCTTCTGC	NA	False	NA	-12	True	AATAAA	-15	NA	87649175	87606730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_87606904_87606997_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
ENSMUST00000032141.14	chr6	+	1464	7	FSM	ENSMUSG00000030060.15	ENSMUST00000032141.14	1464	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	428.702078630629	4677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGGCTCTCACCCAGTA	2964	False	NA	44	True	AATAAA	-30	NA	87890916	87913611	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_87890994_87891472_87891678_87894820_87894965_87898507_87898634_87902613_87902793_87910223_87910417_87913071
ENSMUST00000032165.16	chr6	+	1675	11	FSM	ENSMUSG00000030079.16	ENSMUST00000032165.16	1675	11	0	0	0	0	multi-exon	FALSE	canonical	3	1160	junction_1	83.5499850388975	5915	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGGTTTTTATATTTTAC	NA	False	NA	31	True	AATAAA	-31	NA	88442390	88474554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_88442651_88444547_88444635_88450058_88450192_88456108_88456261_88459099_88459190_88459944_88460095_88461389_88461454_88462694_88462894_88468497_88468601_88473389_88473482_88474209
ENSMUST00000032168.7	chr6	-	3172	12	FSM	ENSMUSG00000030082.15	ENSMUST00000032168.7	3172	12	0	0	0	0	multi-exon	FALSE	canonical	3	923	junction_2	46.8136802778528	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCAGAAAGCTTGTTGT	9095	False	NA	5	True	AATAAA	-39	NA	88495887	88480560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
ENSMUST00000032169.8	chr6	-	1845	12	FSM	ENSMUSG00000030083.12	ENSMUST00000032169.8	1845	12	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_10	111.135015794021	1936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCCTGTTGTTGGGGT	6964	False	NA	-4	True	AATAAA	-21	NA	88818882	88812895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817819_88817883_88818750
ENSMUST00000032172.14	chr6	-	1121	8	FSM	ENSMUSG00000030086.17	ENSMUST00000032172.14	1121	8	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_4	25.4486277245203	1610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCACCCAGTCACTTCTG	NA	False	NA	-5	True	AATAAA	-32	NA	89572634	89360132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_89360331_89361585_89361722_89396729_89396801_89444371_89444456_89544568_89544714_89546324_89546395_89551349_89551573_89572440
ENSMUST00000032175.11	chr6	+	3052	23	FSM	ENSMUSG00000030088.16	ENSMUST00000032175.11	3052	23	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	30.2788691558217	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	NA	False	NA	13	True	AATAAA	-23	NA	90527786	90576151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_90527880_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
ENSMUST00000032183.6	chr6	+	2903	12	FSM	ENSMUSG00000030095.11	ENSMUST00000032183.6	2903	12	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_7	13.7209497779825	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTCGTTTGCTGTTGCA	9688	False	NA	NA	False	AATAAA	-30	NA	91450684	91465445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_91450881_91454226_91454377_91455187_91455323_91455687_91455783_91456554_91456605_91456862_91456933_91457631_91457703_91458913_91459036_91459235_91459311_91459642_91459745_91462298_91462417_91463726
ENSMUST00000032211.5	chr6	-	2125	2	FSM	ENSMUSG00000030117.6	ENSMUST00000032211.5	2125	2	0	0	0	0	multi-exon	FALSE	canonical	3	704	junction_1	0	4983	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAGATTTTGTTAAGGTG	9980	False	NA	NA	False	NA	NA	NA	122587046	122582361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_122584095_122586654
ENSMUST00000032214.14	chr6	+	1451	9	FSM	ENSMUSG00000030120.15	ENSMUST00000032214.14	1451	9	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_8	1260.71298651795	12006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGATTCTGGCTGTACT	NA	False	NA	26	True	AATAAA	-16	NA	124908438	124913107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912564
ENSMUST00000032220.15	chr6	-	1817	8	FSM	ENSMUSG00000030127.16	ENSMUST00000032220.15	1817	8	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_7	625.057254520393	1963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942411	124935778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942247
ENSMUST00000032264.9	chr6	+	1820	4	FSM	ENSMUSG00000030161.9	ENSMUST00000032264.9	1820	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	5.71547606649408	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGGCCTCTTTCTTTTTC	NA	False	NA	34	True	AATAAA	-38	NA	129510122	129519309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_129510500_129514453_129514533_129515532_129515652_129518064
ENSMUST00000032283.12	chr6	-	2610	12	FSM	ENSMUSG00000030177.15	ENSMUST00000032283.12	2610	12	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_10	52.5397920824409	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	NA	False	NA	-14	True	AATAAA	-18	NA	120334390	120301283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327406_120330961_120331016_120334287
ENSMUST00000032307.12	chr6	-	767	5	FSM	ENSMUSG00000030188.13	ENSMUST00000032307.12	767	5	0	0	0	0	multi-exon	FALSE	canonical	2	356	junction_3	64.3059095262636	5893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTAGAATAGGTATTTGC	NA	False	NA	NA	False	AATAAA	-16	NA	131270207	131261350	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_131261692_131262605_131262689_131264998_131265110_131266351_131266411_131270034
ENSMUST00000032326.11	chr6	+	1764	12	FSM	ENSMUSG00000030204.11	ENSMUST00000032326.11	1764	12	0	0	0	0	multi-exon	TRUE	canonical	3	485	junction_5	30.2182146373304	1337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTCTGTGTGTGCACT	6574	False	NA	20	True	ATTAAA	-20	NA	134988574	135000739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992611_134992784_134992904_134993544_134993617_134994083_134994201_134995013_134995161_134995936_134996075_134997578_134997650_134998411_134998542_135000241
ENSMUST00000032336.7	chr6	-	2010	11	FSM	ENSMUSG00000030214.8	ENSMUST00000032336.7	2010	11	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	4.98497743224581	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGGTCCTGCGTTTAGC	NA	False	NA	0	True	AATAAA	-17	NA	136638926	136589067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_136589347_136589734_136589842_136590789_136590976_136593924_136594066_136594199_136594401_136611428_136611574_136612489_136612631_136617114_136617254_136618128_136618213_136628728_136628949_136638559
ENSMUST00000032344.12	chr6	-	1193	6	FSM	ENSMUSG00000030220.14	ENSMUST00000032344.12	1193	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	3.18747549010185	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGAGTTGTCTTATGC	5571	False	NA	NA	False	AATAAA	-20	NA	136918754	136900652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_136901325_136903669_136903734_136906609_136906687_136909257_136909342_136910581_136910772_136918648
ENSMUST00000032372.7	chr6	-	2818	5	Antisense	novelGene_ENSMUSG00000030245.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1491	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGGCCGCAAGGCCGCGC	NA	False	NA	NA	False	NA	NA	NA	142349584	142332946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr6_-_142333096_142338055_142338148_142339653_142339833_142341913_142341996_142347268
ENSMUST00000032373.12	chr6	-	1304	8	FSM	ENSMUSG00000030246.13	ENSMUST00000239395.2	1304	8	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_1	65.6636450839754	4987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGCCTGCCTTTTTCTC	NA	False	NA	-4	True	AATAAA	-19	NA	142453683	142435974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_142436331_142438218_142438343_142439825_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
ENSMUST00000032398.15	chr6	+	2163	10	FSM	ENSMUSG00000030264.15	ENSMUST00000032398.15	2163	10	0	0	0	0	multi-exon	TRUE	canonical	3	600	junction_1	54.2445309298778	2209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	3	True	ATTAAA	-16	NA	113023185	113045234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_113023352_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
ENSMUST00000032406.15	chr6	+	1549	7	FSM	ENSMUSG00000030271.15	ENSMUST00000032406.15	1549	7	0	0	0	0	multi-exon	FALSE	canonical	3	196	junction_2	21.4534379529249	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGTGAAGAGTGAGAGGG	2308	False	NA	14	True	AATAAA	-23	NA	113303932	113311149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_113304324_113305325_113305574_113306189_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
ENSMUST00000032409.15	chr6	-	1496	12	FSM	ENSMUSG00000030272.16	ENSMUST00000032409.15	1496	12	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	8.10570659096682	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCGTTTGCTCAAATAGC	5793	False	NA	NA	False	AATAAA	-20	NA	113320945	113311084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_113311370_113311474_113311593_113313134_113313223_113313318_113313398_113314153_113314267_113315071_113315148_113315240_113315368_113316245_113316385_113316467_113316543_113317252_113317385_113318828_113318944_113320796
ENSMUST00000032425.7	chr6	-	1985	8	FSM	ENSMUSG00000030286.7	ENSMUST00000032425.7	1985	8	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_2	13.3386044002714	902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTGCTTCTGTGGGTTCT	NA	False	NA	2	True	ATTAAA	-29	NA	113508613	113491834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_113492993_113494057_113494141_113494842_113494923_113496875_113496958_113497437_113497543_113499274_113499369_113499710_113499769_113508288
ENSMUST00000032429.9	chr6	+	814	4	FSM	ENSMUSG00000030291.13	ENSMUST00000032429.9	814	4	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_3	35.4902177445498	3268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTTTGTTTGTCCTT	NA	False	NA	36	True	AATAAA	-21	NA	146544044	146552100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_146544151_146549662_146549778_146550647_146550749_146551608
ENSMUST00000032440.6	chr6	-	1353	9	FSM	ENSMUSG00000030298.11	ENSMUST00000032440.6	1353	9	0	0	0	0	multi-exon	FALSE	canonical	3	942	junction_8	78.4968152220203	7277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCATCCCACACAGTGAG	-11	True	NA	-10	True	AATAAA	-23	NA	113717704	113705022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_113705425_113706556_113706704_113707295_113707420_113707734_113707869_113711506_113711641_113712017_113712170_113713332_113713449_113714914_113714960_113717605
ENSMUST00000032441.14	chr6	+	2459	13	FSM	ENSMUSG00000030301.18	ENSMUST00000032441.14	2459	13	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	9.07683253612673	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGATTGTCATGTTTTTG	NA	False	NA	17	True	AATAAA	-18	NA	147377368	147534110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_147377558_147409281_147409326_147412321_147412401_147435526_147435688_147437085_147437290_147438873_147438979_147464132_147464211_147476970_147477079_147491884_147491978_147492066_147492136_147493536_147493714_147508379_147508494_147533072
ENSMUST00000032446.12	chr6	-	1661	13	FSM	ENSMUSG00000030304.12	ENSMUST00000032446.12	1661	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	272.167381097246	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGACTGGCCCTGTGTTAC	NA	False	NA	29	True	AATAAA	-7	NA	148113605	148082713	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148108030_148108174_148113467
ENSMUST00000032461.12	chr6	-	1168	8	FSM	ENSMUSG00000030316.14	ENSMUST00000032461.12	1168	8	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_6	13.6695699587494	1975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCACTCTGACTGGCT	NA	False	NA	-34	True	AATAAA	-25	NA	115014837	114981341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002386_115009180_115009274_115011911_115012095_115014610
ENSMUST00000032476.11	chr6	-	3959	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	0	0	0	0	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	3855	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTATTTTTCCCCCTCTTG	9816	False	NA	-4	True	AATAAA	-29	NA	122719704	122704767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
ENSMUST00000032477.6	chr6	+	2476	8	FSM	ENSMUSG00000030327.9	ENSMUST00000032477.6	2476	8	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_7	29.158959137102	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGTTTTTCATCTTTTA	788	False	NA	9	True	ATTAAA	-15	NA	122851432	122865900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_122851623_122857371_122857473_122857616_122857722_122858459_122858542_122859226_122859336_122859772_122859957_122863710_122863814_122864298
ENSMUST00000032480.14	chr6	+	1629	8	FSM	ENSMUSG00000030330.16	ENSMUST00000032480.14	1629	8	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	19.3527933964298	696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGTGCGGTGATAG	7107	False	NA	6	True	AATAAA	-16	NA	125016798	125026227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024551_125024755_125024904_125025138_125025201_125025330
ENSMUST00000032481.8	chr6	+	584	4	FSM	ENSMUSG00000072770.10	ENSMUST00000032481.8	584	4	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_3	54.0514158515349	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCATTTTGGAGAGTATT	NA	False	NA	NA	False	NA	NA	NA	125026929	125028510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_125027016_125027396_125027613_125027809_125027905_125028323
ENSMUST00000032491.15	chr6	+	2156	10	FSM	ENSMUSG00000030341.18	ENSMUST00000032491.15	2156	10	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_1	4.54062594260057	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTGACCCTGGAAAGAGTG	3776	False	NA	15	True	AATACA	-20	NA	125326685	125339447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_125327026_125333787_125333942_125334275_125334405_125334683_125334834_125335016_125335096_125337459_125337537_125337672_125337787_125338054_125338084_125338261_125338548_125338649
ENSMUST00000032492.9	chr6	-	1228	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	0	0	0	0	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	20577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	9966	False	NA	-10	True	AATAAA	-15	NA	125471754	125437228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
ENSMUST00000032508.11	chr6	-	2217	10	FSM	ENSMUSG00000030357.11	ENSMUST00000032508.11	2217	10	0	0	0	0	multi-exon	FALSE	canonical	3	5250	junction_7	195.172162050601	6460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9269	False	NA	-21	True	AATAAA	-16	NA	128415640	128407065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
ENSMUST00000032560.6	chr7	-	1648	5	FSM	ENSMUSG00000030402.6	ENSMUST00000032560.6	1648	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	5.35607132140714	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTTTCTTCGTTGTTGT	9555	False	NA	1	True	AATAAA	-17	NA	19013989	19010729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19011135_19011874_19011936_19012009_19012116_19012194_19012313_19013031
ENSMUST00000032561.9	chr7	-	2215	13	FSM	ENSMUSG00000030403.10	ENSMUST00000032561.9	2215	13	0	0	0	0	multi-exon	FALSE	canonical	3	1236	junction_9	117.461666323765	2094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005742	18990853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
ENSMUST00000032573.8	chr7	+	694	3	FSM	ENSMUSG00000030413.8	ENSMUST00000032573.8	694	3	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	21	2354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTCCCTCCGGTGAATC	NA	False	NA	6	True	AATAAA	-15	NA	18618604	18624366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_18618899_18623202_18623325_18624088
ENSMUST00000032597.12	chr7	+	1106	5	FSM	ENSMUSG00000030432.13	ENSMUST00000032597.12	1106	5	0	0	0	0	multi-exon	FALSE	canonical	3	3938	junction_1	1160.31525888441	292693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCATGTCCTTTATATT	2693	False	NA	NA	False	NA	NA	NA	4795872	4798065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_4795998_4796319_4796409_4796501_4796626_4797062_4797182_4797416
ENSMUST00000032635.14	chr7	-	3197	7	FSM	ENSMUSG00000030452.17	ENSMUST00000032635.14	3197	7	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_5	25.3837218179946	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612224	55581034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55611947
ENSMUST00000032661.14	chr7	+	2362	5	FSM	ENSMUSG00000055102.16	ENSMUST00000032661.14	2362	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	20.1416856295594	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCACATTCATCCATTGC	2892	False	NA	7	True	AATAAA	-21	NA	43256648	43267709	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_43256699_43259209_43259403_43261406_43261534_43261970_43262064_43265810
ENSMUST00000032701.14	chr7	-	1620	12	FSM	ENSMUSG00000030491.17	ENSMUST00000032701.14	1620	12	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_6	48.0311538018523	1455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAAATTCTCTTAAAATA	NA	False	NA	-13	True	AATAAA	-33	NA	35237170	35193036	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
ENSMUST00000032704.12	chr7	-	1857	4	FSM	ENSMUSG00000030493.14	ENSMUST00000032704.12	1857	4	0	0	0	0	multi-exon	TRUE	canonical	3	143	junction_2	4.92160768674447	787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGATCCACAGGCTATAT	NA	False	NA	NA	False	AATAGA	-24	NA	35096261	35091576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_35092517_35094399_35094553_35094661_35094802_35095637
ENSMUST00000032705.13	chr7	+	3508	15	FSM	ENSMUSG00000030494.14	ENSMUST00000032705.13	3508	15	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_1	11.3992928531124	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTCTTTTGCTTT	NA	False	NA	26	True	AATAAA	-26	NA	35033594	35091714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_35033837_35053156_35053273_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179
ENSMUST00000032723.9	chr7	+	955	8	FSM	ENSMUSG00000030512.14	ENSMUST00000032723.9	955	8	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_5	1022.69418095299	7643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGTGTGCTGTGT	NA	False	NA	16	True	AATAAA	-16	NA	65710291	65724328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65719275_65720337_65720414_65720979_65721074_65724069
ENSMUST00000032726.14	chr7	+	908	5	FSM	ENSMUSG00000078681.11	ENSMUST00000032726.14	908	5	0	0	0	0	multi-exon	FALSE	canonical	3	473	junction_3	21.6333076527839	968	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGACAACCCAGAACTTT	NA	False	NA	17	True	AATAAA	-17	NA	65343155	65351650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_65343318_65344890_65345076_65347443_65347619_65348839_65348916_65351340
ENSMUST00000032735.8	chr7	-	2248	11	FSM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_4	61.7421250039226	1386	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACGGGCTTATTTCATC	NA	False	NA	-3	True	NA	NA	NA	64042016	64026274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_64026553_64026915_64027144_64028485_64028594_64030677_64030789_64032638_64032777_64034049_64034118_64035426_64035569_64037196_64037366_64038613_64038772_64039194_64039880_64041853
ENSMUST00000032749.12	chr7	+	2574	23	FSM	ENSMUSG00000030534.14	ENSMUST00000032749.12	2574	23	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_6	14.9188576657057	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTGTTTTTTGTTTGT	NA	False	NA	17	True	AATAAA	-21	NA	79919396	79941327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_79919828_79923976_79924058_79924371_79924434_79925793_79925844_79926145_79926214_79929719_79929766_79932232_79932328_79933175_79933281_79933727_79933825_79934031_79934110_79934289_79934364_79934765_79934853_79934997_79935089_79935303_79935379_79935581_79935647_79935758_79935814_79936855_79936903_79937525_79937659_79938147_79938222_79939729_79939832_79940015_79940092_79940195_79940313_79940862
ENSMUST00000032761.8	chr7	-	2241	3	FSM	ENSMUSG00000030545.10	ENSMUST00000032761.8	2241	3	0	0	0	0	multi-exon	TRUE	canonical	3	20	junction_1	0	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCGTCTGTGAGTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	79392828	79385704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_79387659_79389912_79390029_79392657
ENSMUST00000032809.10	chr7	+	1111	8	FSM	ENSMUSG00000030588.13	ENSMUST00000032809.10	1111	8	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_1	365.371993833067	6311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6061	False	NA	12	True	AATAAA	-15	NA	28937777	28946954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28937871_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ENSMUST00000032818.13	chr7	+	1958	7	FSM	ENSMUSG00000030598.16	ENSMUST00000032818.13	1958	7	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_6	22.6838170411321	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	28416228	28437569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763
ENSMUST00000032823.5	chr7	-	2611	8	FSM	ENSMUSG00000030602.14	ENSMUST00000032823.5	2611	8	0	0	0	0	multi-exon	FALSE	canonical	3	646	junction_7	25.4076960861894	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTGTATGTGTGTG	NA	False	NA	-5	True	ATTAAA	-19	NA	28267662	28258245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28259231_28259569_28259705_28260223_28260350_28261962_28262090_28262372_28262507_28263630_28264072_28264237_28264697_28267458
ENSMUST00000032824.10	chr7	-	1440	11	FSM	ENSMUSG00000030603.17	ENSMUST00000032824.10	1440	11	0	0	0	0	multi-exon	FALSE	canonical	3	2113	junction_5	109.082033351052	19899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTCTTAGGTGTTTAAC	NA	False	NA	-4	True	AATAAA	-24	NA	27749526	27741131	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
ENSMUST00000032825.14	chr7	-	2125	10	FSM	ENSMUSG00000030605.16	ENSMUST00000032825.14	2125	10	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_6	379.595691346581	2314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTCTGTGCCTCCTCATT	NA	False	NA	-6	True	AATACA	-18	NA	78798808	78783516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78793025_78793137_78794994_78795127_78795369_78795493_78798642
ENSMUST00000032839.13	chr7	-	2269	5	FSM	ENSMUSG00000030610.14	ENSMUST00000032839.13	2269	5	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_2	8.89873586527884	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACACTGTCTCTTCCTTGA	NA	False	NA	-3	True	AATAAA	-18	NA	78497011	78477221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_78477861_78483858_78484051_78489752_78489941_78492919_78494013_78496854
ENSMUST00000032840.5	chr7	+	1056	6	FSM	ENSMUSG00000030611.11	ENSMUST00000032840.5	1056	6	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_2	39.2153031353833	3009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGTGAGTTTTTGTTC	NA	False	NA	3	True	AATAAA	-16	NA	78432866	78442737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_78433172_78433320_78433429_78438422_78438522_78440384_78440515_78441621_78441688_78442389
ENSMUST00000032841.7	chr7	-	1134	4	FSM	ENSMUSG00000030612.7	ENSMUST00000032841.7	1134	4	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_2	24.7296493213219	5328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAACAGACCTACTGGGC	NA	False	NA	NA	False	AGTAAA	-18	NA	78432837	78424983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_78425474_78430185_78430360_78431147_78431335_78432554
ENSMUST00000032842.13	chr7	+	1596	9	FSM	ENSMUSG00000030613.14	ENSMUST00000032842.13	1596	9	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_4	17.8658193207029	1902	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTGTAAATGTGTTAT	NA	False	NA	10	True	AATAAA	-18	NA	92210356	92231502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_92210844_92216829_92216950_92217679_92217784_92221746_92221849_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231002
ENSMUST00000032843.9	chr7	-	2259	5	FSM	ENSMUSG00000030614.9	ENSMUST00000032843.9	2259	5	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_1	24.1389208540896	1407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGCATGGAGGTCCCTG	6020	False	NA	NA	False	NA	NA	NA	90125209	90116645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_90118370_90118777_90118890_90119972_90120167_90121805_90121928_90125102
ENSMUST00000032844.7	chr7	-	799	5	FSM	ENSMUSG00000030615.13	ENSMUST00000032844.7	799	5	0	0	0	0	multi-exon	FALSE	canonical	3	739	junction_4	32.5297940356222	6921	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGCAACATTAAAATACTT	1645	False	NA	NA	False	AATAAA	-19	NA	90106437	90099907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_90100144_90100750_90100866_90101914_90102109_90104631_90104728_90106279
ENSMUST00000032877.11	chr7	-	3387	6	FSM	ENSMUSG00000030641.11	ENSMUST00000032877.11	3387	6	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_4	35.6168499449348	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTTTTTGTTATAATTT	NA	False	NA	-1	True	AGTAAA	-18	NA	92523455	92506732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_92509521_92510607_92510726_92511532_92511695_92515778_92515908_92521969_92522053_92523348
ENSMUST00000032882.9	chr7	+	683	3	FSM	ENSMUSG00000030647.9	ENSMUST00000032882.9	683	3	0	0	0	0	multi-exon	FALSE	canonical	3	2164	junction_2	233	29519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCCTTTCCTGGTTCTGC	NA	False	NA	21	True	ATTAAA	-20	NA	97049209	97057009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_97049565_97056072_97056217_97056825
ENSMUST00000032884.16	chr7	+	937	5	FSM	ENSMUSG00000030649.19	ENSMUST00000032884.16	937	5	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	120.728000066265	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	7837	False	NA	19	True	AATAAA	-19	NA	101545634	101548745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_101545658_101546939_101547025_101547148_101547279_101547760_101547821_101548106
ENSMUST00000032887.4	chr7	-	914	6	FSM	ENSMUSG00000030652.12	ENSMUST00000032887.4	914	6	0	0	0	0	multi-exon	FALSE	canonical	3	921	junction_3	42.5234053198941	7292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTGGTTTTCTTGTGCT	6625	False	NA	-2	True	AATAAA	-16	NA	118132579	118124284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_118124518_118125046_118125116_118126559_118126700_118127526_118127642_118128781_118128961_118132401
ENSMUST00000032888.10	chr7	-	2171	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	0	0	0	0	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	11250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTTTGTTAACTCTGA	NA	False	NA	-11	True	ATTAAA	-25	NA	117728885	117718113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
ENSMUST00000032895.15	chr7	+	1685	14	FSM	ENSMUSG00000030659.15	ENSMUST00000032895.15	1685	14	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	11.132340009308	326	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACACACGTTTTTATCTT	NA	False	NA	NA	False	AATAAA	-44	NA	116103603	116139819	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_116103720_116108689_116108861_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179_116139262_116139676
ENSMUST00000032899.12	chr7	+	1479	5	FSM	ENSMUSG00000030663.13	ENSMUST00000032899.12	1479	5	0	0	0	0	multi-exon	FALSE	canonical	3	1664	junction_2	78.2527954772224	11821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	False	NA	29	True	AATAAA	-20	NA	115692535	115704445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_115692761_115698674_115698759_115701178_115701240_115702445_115702556_115703446
ENSMUST00000032906.11	chr7	-	994	5	FSM	ENSMUSG00000030669.14	ENSMUST00000032906.11	994	5	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	7.39932429347437	1412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGTCTTTGCTGTTACT	2034	False	NA	0	True	ATTAAA	-27	NA	114235592	114230712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_114231141_114231650_114231835_114233702_114233844_114234361_114234457_114235446
ENSMUST00000032907.9	chr7	-	830	4	FSM	ENSMUSG00000030669.14	ENSMUST00000032907.9	830	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	40.2022663816634	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGAACCATGGTGGTCA	2079	False	NA	NA	False	AATAAA	-16	NA	114235547	114232527	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_114233021_114233702_114233844_114234361_114234457_114235446
ENSMUST00000032910.13	chr7	+	766	7	FSM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	683.213892000318	8755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGTGTGTTCATGCGCA	2960	False	NA	42	True	AATAAA	-34	NA	126810779	126813470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126810936_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUST00000032915.8	chr7	-	2115	14	FSM	ENSMUSG00000030677.9	ENSMUST00000032915.8	2115	14	0	0	0	0	multi-exon	FALSE	canonical	3	689	junction_8	49.8885147636753	996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGAGCCTGGTTTTTGA	7925	False	NA	-6	True	AATACA	-13	NA	126641643	126626902	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
ENSMUST00000032924.6	chr7	+	1676	6	FSM	ENSMUSG00000030685.6	ENSMUST00000032924.6	1676	6	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_2	8.49470423263812	242	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGACTCTCGGGTGAG	NA	False	NA	25	True	AATAAA	-17	NA	126528050	126544803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126528471_126529804_126529975_126540504_126540595_126540682_126540736_126541318_126541515_126544056
ENSMUST00000032926.12	chr7	-	941	6	FSM	ENSMUSG00000060538.15	ENSMUST00000032926.12	941	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	14.8781719307178	855	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGTGTAAGGTACTTAC	6219	False	NA	-2	True	AATAAA	-14	NA	126497448	126485391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126496197_126496400_126497395
ENSMUST00000032934.12	chr7	-	1511	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	0	0	0	0	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	28520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126398426	126394405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
ENSMUST00000032936.8	chr7	-	1359	9	FSM	ENSMUSG00000030697.8	ENSMUST00000032936.8	1359	9	0	0	0	0	multi-exon	FALSE	canonical	3	1828	junction_8	282.244574792856	8864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGGTTCTGTCAGGTTTG	5070	False	NA	NA	False	AATAAA	-15	NA	126391668	126385037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232_126391396_126391594
ENSMUST00000032944.9	chr7	+	1148	10	FSM	ENSMUSG00000030703.9	ENSMUST00000032944.9	1148	10	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_3	2.43938871112224	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTTCATGGAACAAGGG	NA	False	NA	12	True	AATAAA	-18	NA	126365505	126374817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126365782_126366073_126366117_126366346_126366483_126366562_126366609_126366738_126366858_126366934_126367025_126367741_126367876_126370159_126370220_126370333_126370386_126374625
ENSMUST00000032956.10	chr7	+	1312	10	FSM	ENSMUSG00000030714.15	ENSMUST00000032956.10	1312	10	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_3	31.8433666561813	1972	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTTTGTACTTTAGGT	111	False	NA	NA	False	AATACA	-18	NA	126248480	126272097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
ENSMUST00000032961.4	chr7	-	829	3	FSM	ENSMUSG00000030717.10	ENSMUST00000032961.4	829	3	0	0	0	0	multi-exon	FALSE	canonical	3	3716	junction_2	16	15558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTGGCGTGTGTTGTGT	NA	False	NA	-8	True	AATAAA	-16	NA	126224848	126222420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126222752_126224061_126224206_126224494
ENSMUST00000032969.14	chr7	-	3069	12	FSM	ENSMUSG00000030726.17	ENSMUST00000032969.14	3069	12	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_4	47.2898570362863	650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTGCGAGTTGGAGT	NA	False	NA	-4	True	AATAAA	-18	NA	99770772	99731317	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742689_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99768880_99768937_99770570
ENSMUST00000032988.10	chr7	-	1852	6	FSM	ENSMUSG00000030800.11	ENSMUST00000032988.10	1852	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	2.78567765543682	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTACACATATTTACAG	NA	False	NA	NA	False	AATAAA	-14	NA	127529276	127524887	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127525813_127525916_127526084_127526170_127526443_127526980_127527144_127528728_127528747_127528969
ENSMUST00000032994.15	chr7	-	2219	12	FSM	ENSMUSG00000030741.16	ENSMUST00000032994.15	2219	12	0	0	0	0	multi-exon	TRUE	canonical	3	348	junction_9	48.6508899292612	553	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACTGCTTGTCTCTCTGT	NA	False	NA	1	True	AATAAA	-21	NA	125976622	125969231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008
ENSMUST00000032998.13	chr7	-	1908	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	0	0	0	0	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	405468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGTATGCAATTATT	8335	False	NA	-12	True	AATAAA	-29	NA	99132945	99127102	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
ENSMUST00000033001.6	chr7	-	2262	8	FSM	ENSMUSG00000030747.6	ENSMUST00000033001.6	2262	8	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	10.965623464226	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTTGTTGCTTAATGC	NA	False	NA	NA	False	AATAAA	-18	NA	98831926	98802864	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_98803908_98806183_98806387_98807359_98807535_98808039_98808245_98813841_98813913_98814288_98814397_98818904_98819034_98831598
ENSMUST00000033006.14	chr7	-	1120	8	FSM	ENSMUSG00000030750.14	ENSMUST00000033006.14	1120	8	0	0	0	0	multi-exon	FALSE	canonical	3	553	junction_7	177.832872698624	6520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTGTGTGAGGTTGGGT	NA	False	NA	-11	True	AGTAAA	-33	NA	125090768	125066811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_125067016_125067450_125067572_125068200_125068318_125070284_125070432_125071046_125071125_125071279_125071402_125085509_125085657_125090584
ENSMUST00000033008.10	chr7	-	1201	10	FSM	ENSMUSG00000030751.19	ENSMUST00000033008.10	1201	10	0	0	0	0	multi-exon	FALSE	canonical	3	2548	junction_6	196.061655709387	33071	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875353	113863840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
ENSMUST00000033010.9	chr7	+	2389	8	FSM	ENSMUSG00000030752.9	ENSMUST00000033010.9	2389	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_7	4.74664220738176	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAAGAAACATTTCTTTA	NA	False	NA	NA	False	AATAAA	-27	NA	125043847	125061441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_125043965_125051399_125051901_125054262_125054430_125055604_125055738_125056135_125056181_125059046_125059197_125060086_125060180_125060258
ENSMUST00000033012.9	chr7	-	3346	22	FSM	ENSMUSG00000030754.10	ENSMUST00000033012.9	3346	22	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_12	34.3731688854697	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTATCTGTGGGATTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	113853946	113814793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_113815173_113815697_113815854_113816856_113816947_113818760_113818907_113820877_113820998_113822437_113822583_113825837_113826018_113826181_113826410_113831409_113831531_113832431_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853840
ENSMUST00000033023.10	chr7	+	1487	6	FSM	ENSMUSG00000030762.12	ENSMUST00000033023.10	1487	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	2.57681974534503	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCTGTTGACTTGTCTT	4376	False	NA	7	True	AATAAA	-21	NA	123061513	123067227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_123061682_123061796_123062042_123063411_123063539_123064331_123064547_123065808_123065944_123066630
ENSMUST00000033025.7	chr7	+	1369	11	FSM	ENSMUSG00000030763.8	ENSMUST00000033025.7	1369	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	88.7783757454483	2548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCTGTACAATGACATTC	6824	False	NA	31	True	AATAAA	-31	NA	122977204	123029581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_122977479_122999660_122999753_123000666_123000789_123002057_123002135_123003645_123003708_123009946_123010050_123017440_123017562_123020760_123020863_123021929_123022022_123027316_123027415_123029355
ENSMUST00000033049.9	chr7	-	680	3	FSM	ENSMUSG00000030785.9	ENSMUST00000033049.9	680	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	3.5	782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTCTTGTGTTAGTTCT	5383	False	NA	NA	False	AATACA	-20	NA	127805559	127804606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127804985_127805071_127805209_127805394
ENSMUST00000033054.10	chr7	+	1390	4	FSM	ENSMUSG00000030790.16	ENSMUST00000033054.10	1390	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.24721912892465	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCGGTTCATGCAT	5113	False	NA	NA	False	AATAAA	-16	NA	110226867	110229027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_110227029_110227463_110227584_110227731_110227882_110228068
ENSMUST00000033060.14	chr7	+	2140	12	FSM	ENSMUSG00000030796.18	ENSMUST00000033060.14	2140	12	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	60.1724793633042	987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAAGGGGATTTATTTGA	5430	False	NA	NA	False	AATAAA	-38	NA	44865176	44883068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44865257_44866636_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
ENSMUST00000033063.15	chr7	-	1268	9	FSM	ENSMUSG00000030798.16	ENSMUST00000033063.15	1268	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	25.228641957109	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTTTTTTTTTTTTTTTT	4144	False	NA	-22	True	AATAAA	-16	NA	44888539	44883064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44883403_44884107_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083_44888159_44888383
ENSMUST00000033070.9	chr7	+	1579	11	FSM	ENSMUSG00000030801.11	ENSMUST00000033070.9	1579	11	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_2	15.0053323855222	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGATTCCTCGCTCCTTT	NA	False	NA	92	True	NA	NA	NA	127511687	127525009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_127511915_127514399_127514475_127514550_127514727_127519407_127519462_127519593_127519759_127521330_127521421_127523549_127523691_127523775_127523870_127523967_127524119_127524280_127524436_127524758
ENSMUST00000033074.8	chr7	-	748	3	FSM	ENSMUSG00000096145.3	ENSMUST00000033074.8	748	3	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_2	18.5	5069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTAGCATATGTCTGCC	NA	False	NA	-11	True	AATAAA	-19	NA	127494789	127492234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127492664_127493676_127493787_127494580
ENSMUST00000033075.14	chr7	-	1456	11	Antisense	novelGene_ENSMUSG00000030805.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	907	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGCGAGGGCTCGGCTCG	946	False	NA	NA	False	NA	NA	NA	127448191	127440935	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr7_-_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447671_127447740_127447840_127447922
ENSMUST00000033086.8	chr7	+	1570	10	FSM	ENSMUSG00000030815.12	ENSMUST00000033086.8	1570	10	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	31.2018517968975	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATGTCTGCTGTCTAGT	NA	False	NA	26	True	AATAAA	-27	NA	127172575	127182479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_127172629_127173025_127173139_127176706_127176883_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUST00000033093.10	chr7	-	867	6	FSM	ENSMUSG00000003873.12	ENSMUST00000033093.10	867	6	0	0	0	0	multi-exon	FALSE	canonical	3	2296	junction_5	352.488638114762	13217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCCCTTGTCCGCCCA	9915	False	NA	-2	True	AATAAA	-22	NA	45116322	45111120	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45111391_45112822_45112928_45114612_45114749_45115400_45115548_45115643_45115696_45116165
ENSMUST00000033095.10	chr7	+	2402	11	FSM	ENSMUSG00000030822.16	ENSMUST00000033095.10	2402	11	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_10	17.7132718603876	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGACTCCTTTGTGC	NA	False	NA	8	True	TATAAA	-13	NA	127070661	127075930	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
ENSMUST00000033096.16	chr7	-	2111	13	FSM	ENSMUSG00000030824.18	ENSMUST00000033096.16	2111	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	147.246014848922	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCCTGCCCTCTTCCAA	NA	False	NA	-4	True	AATAAA	-19	NA	45159750	45142531	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45143374_45143540_45143626_45144041_45144213_45144476_45144570_45144645_45144739_45144978_45145038_45147823_45147915_45148148_45148335_45149225_45149330_45151006_45151140_45152601_45152710_45159129_45159272_45159746
ENSMUST00000033098.16	chr7	+	1772	11	FSM	ENSMUSG00000030826.20	ENSMUST00000033098.16	1772	11	0	0	0	0	multi-exon	TRUE	canonical	3	349	junction_4	47.8895604490164	1284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGCTATCATGCTCTAAG	2255	False	NA	NA	False	AATAAA	-18	NA	45219576	45239135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45219824_45224854_45224930_45225222_45225427_45234340_45234452_45234534_45234655_45234837_45235002_45237072_45237216_45237358_45237445_45237662_45237804_45237877_45237953_45238729
ENSMUST00000033099.6	chr7	-	951	3	FSM	ENSMUSG00000030827.6	ENSMUST00000033099.6	951	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4.5	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAACTGAGATATGTTTC	NA	False	NA	NA	False	AATAAA	-29	NA	45264914	45263309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45263735_45264289_45264394_45264492
ENSMUST00000033131.12	chr7	+	1119	5	FSM	ENSMUSG00000030842.13	ENSMUST00000033131.12	1119	5	0	0	0	0	multi-exon	FALSE	canonical	3	733	junction_4	69.0230939613692	3125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTCTGTCCTGCCCACT	7027	False	NA	28	True	GATAAA	-32	NA	101555110	101561110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_101555248_101558870_101559017_101559235_101559314_101559626_101559754_101560479
ENSMUST00000033133.12	chr7	-	880	5	FSM	ENSMUSG00000030844.12	ENSMUST00000033133.12	880	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	4.32290411644765	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTAGTCATTTCTACTT	NA	False	NA	NA	False	ATTAAA	-24	NA	128019897	127975344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127975767_127990687_127990832_128004893_128004981_128006082_128006202_128019789
ENSMUST00000033135.9	chr7	-	1580	12	FSM	ENSMUSG00000030846.16	ENSMUST00000033135.9	1580	12	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_7	29.2730095977351	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGACTATAAATTTTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	128063079	128044003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
ENSMUST00000033136.9	chr7	+	2562	4	FSM	ENSMUSG00000030847.9	ENSMUST00000033136.9	2562	4	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_2	8.2192186706253	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTTGTGGTTTCTAA	7142	False	NA	17	True	AATAAA	-22	NA	128125339	128148705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_128125769_128141696_128142036_128143530_128143933_128147313
ENSMUST00000033154.8	chr7	+	2199	10	FSM	ENSMUSG00000030867.8	ENSMUST00000033154.8	2199	10	0	0	0	0	multi-exon	FALSE	canonical	3	1108	junction_2	92.3724345606776	1632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTTTCTCTTTTTG	NA	False	NA	56	True	ATTAAA	-14	NA	121758661	121769096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
ENSMUST00000033156.5	chr7	+	1532	6	FSM	ENSMUSG00000030868.7	ENSMUST00000033156.5	1532	6	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_5	42.3008274150755	1705	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTAGGCTCATTCATT	NA	False	NA	14	True	AATAAA	-15	NA	121732263	121748267	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121743007_121743111_121747279
ENSMUST00000033176.7	chr7	+	1896	14	FSM	ENSMUSG00000030884.13	ENSMUST00000033176.7	1896	14	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_9	72.1248916810278	3461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACATCCTCTCAGCTGGT	NA	False	NA	22	True	AGTAAA	-14	NA	120234398	120258747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
ENSMUST00000033182.10	chr7	+	1795	13	FSM	ENSMUSG00000030890.17	ENSMUST00000033182.10	1795	13	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	33.4937805171846	1003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGTGTGGGGACAGAGGG	NA	False	NA	28	True	AATAAA	-18	NA	105385798	105392132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_105385924_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
ENSMUST00000033210.13	chr7	+	1484	5	FSM	ENSMUSG00000030917.14	ENSMUST00000033210.13	1484	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8.8423695919137	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTTTTCTTTTTCTT	NA	False	NA	5	True	ATTAAA	-14	NA	119701575	119720209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_119701739_119703852_119704053_119714608_119714778_119715442_119715582_119719396
ENSMUST00000033236.9	chr7	-	2689	4	FSM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_1	48.9239773072014	837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCATTCTTTTTTATT	NA	False	NA	-1	True	AATAAA	-20	NA	119320021	119314315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_119316293_119317244_119317494_119318349_119318525_119319733
ENSMUST00000033241.6	chr7	+	1612	7	FSM	ENSMUSG00000030946.14	ENSMUST00000033241.6	1612	7	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_6	19.9979165581484	1035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGACTCAGCCTTTCTTA	NA	False	NA	12	True	AATAAA	-20	NA	132212367	132308149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_132212560_132232210_132232399_132235729_132235884_132243252_132243317_132244215_132244309_132251986_132252079_132307320
ENSMUST00000033257.15	chr7	-	1107	6	FSM	ENSMUSG00000030960.17	ENSMUST00000033257.15	1107	6	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_3	60.7651215747982	1633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTTTTGGTTTTTGTGC	NA	False	NA	NA	False	AGTAAA	-18	NA	132454402	132429185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_132429612_132433088_132433306_132438828_132438937_132452323_132452439_132453154_132453221_132454227
ENSMUST00000033282.5	chr7	+	1244	7	FSM	ENSMUSG00000030983.5	ENSMUST00000033282.5	1244	7	0	0	0	0	multi-exon	FALSE	canonical	3	1578	junction_1	47.9215214931895	9099	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGAAGTGTTCATGTCC	1307	False	NA	23	True	AATAAA	-24	NA	133311061	133322874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_133311258_133315916_133315992_133316627_133316709_133318589_133318680_133319327_133319516_133320832_133321008_133322435
ENSMUST00000033290.12	chr7	-	2955	12	FSM	ENSMUSG00000030986.14	ENSMUST00000033290.12	2955	12	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_11	48.5725154403017	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTCAATGGGTTTCTTG	NA	False	NA	-9	True	AATAAA	-19	NA	133378532	133322670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128_133361643_133378330
ENSMUST00000033313.3	chrX	-	2324	9	Antisense	novelGene_ENSMUSG00000031007.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5544	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTCCGATCCCCAAGCCCC	NA	False	NA	NA	False	NA	NA	NA	12483288	12454039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chrX_-_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
ENSMUST00000033333.13	chr7	-	1703	5	FSM	ENSMUSG00000031021.14	ENSMUST00000033333.13	1703	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_4	15.7698287879102	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGTTTCTGTTCTCCAG	NA	False	NA	2	True	AATAAA	-19	NA	109351486	109335040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_109336199_109342753_109342889_109344516_109344626_109349219_109349312_109351277
ENSMUST00000033335.6	chr7	+	1028	6	FSM	ENSMUSG00000031023.6	ENSMUST00000033335.6	1028	6	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	91.1249691357972	2228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTTTATTGCTATTAAA	NA	False	NA	NA	False	AATAAA	-25	NA	109302896	109311396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_109302984_109303152_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
ENSMUST00000033383.3	chrX	+	3467	21	FSM	ENSMUSG00000031066.11	ENSMUST00000033383.3	3467	21	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_13	34.5694590643244	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTAGCTGTTTTGAGTGTT	NA	False	NA	3	True	NA	NA	NA	20570144	20586778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_20570359_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20583993_20584044_20584232_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
ENSMUST00000033388.12	chr7	+	2015	5	FSM	ENSMUSG00000031072.15	ENSMUST00000033388.12	2015	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_3	3.69966214673719	432	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTCTGTCTGGGATCATT	NA	False	NA	8	True	AATAAA	-18	NA	144468871	144474871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_144469067_144470164_144470271_144471346_144471418_144472960_144473079_144473346
ENSMUST00000033389.7	chr7	+	1810	3	FSM	ENSMUSG00000031073.7	ENSMUST00000033389.7	1810	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	1.5	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTGTTCTATTCCAAG	NA	False	NA	NA	False	ATTAAA	-23	NA	144450267	144454690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_144450669_144450852_144450957_144453385
ENSMUST00000033407.13	chr7	-	2913	17	FSM	ENSMUSG00000031078.16	ENSMUST00000033407.13	2913	17	0	0	0	0	multi-exon	TRUE	canonical	3	340	junction_7	190.956545694956	890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGATCTTCTGCAG	NA	False	NA	-18	True	AATAAA	-16	NA	144024482	143989469	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
ENSMUST00000033430.3	chrX	+	1158	2	FSM	ENSMUSG00000031104.3	ENSMUST00000033430.3	1158	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCACGTGGCTTTGTGTCTT	NA	False	NA	6	True	AATAAA	-14	NA	47608161	47619109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_47608736_47618525
ENSMUST00000033431.14	chrX	+	1760	11	FSM	ENSMUSG00000031105.17	ENSMUST00000033431.14	1760	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	43.9708994677161	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	14	True	ATTAAA	-17	NA	47712454	47751171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_47712706_47712838_47713075_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
ENSMUST00000033433.3	chrX	+	1747	6	FSM	ENSMUSG00000031107.7	ENSMUST00000033433.3	1747	6	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	50.9768574943572	2225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGGCATTTGGTCCACTCA	NA	False	NA	NA	False	NA	NA	NA	47783880	47799600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_47783998_47784196_47784313_47786277_47786330_47795181_47795312_47797766_47797951_47798452
ENSMUST00000033437.15	chrX	-	3170	16	FSM	ENSMUSG00000031109.17	ENSMUST00000033437.15	3170	16	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_15	15.0814087169896	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACAGGGACTCCTCTGG	NA	False	NA	45	True	NA	NA	NA	48377119	48099334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_48100512_48102009_48102058_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375721_48375782_48377033
ENSMUST00000033449.8	chrX	-	1454	4	FSM	ENSMUSG00000031118.9	ENSMUST00000033449.8	1454	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	37.249906785864	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGTTGCTCCGTTTCA	NA	False	NA	-2	True	CATAAA	-17	NA	51061649	51057571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_51058747_51059091_51059163_51059786_51059953_51061607
ENSMUST00000033458.3	chrX	+	1022	8	FSM	ENSMUSG00000031125.3	ENSMUST00000033458.3	1022	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	16.2819544532076	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTGGCAAATAGTCCTT	NA	False	NA	NA	False	AATAAA	-15	NA	55181931	55198858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_55181986_55183330_55183457_55183770_55183835_55184104_55184140_55192435_55192554_55193247_55193348_55198014_55198114_55198432
ENSMUST00000033473.12	chrX	-	2499	5	FSM	ENSMUSG00000031137.18	ENSMUST00000033473.12	2499	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	5.62916512459885	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACTTCAATGTGTGTT	NA	False	NA	NA	False	AATAAA	-25	NA	58179796	58107504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_58109030_58112760_58112960_58171253_58171358_58177199_58177311_58179236
ENSMUST00000033483.5	chrX	-	2353	17	FSM	ENSMUSG00000031143.5	ENSMUST00000033483.5	2353	17	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_12	25.3807721267498	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACGCTTAGGCATGGATT	NA	False	NA	-9	True	AATAAA	-19	NA	7471756	7460047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_7460407_7460768_7460844_7460922_7460983_7461198_7461295_7461534_7461643_7461724_7461827_7461943_7462061_7462141_7462262_7462732_7462853_7462969_7463033_7463776_7463972_7465396_7465576_7465672_7465740_7465867_7465975_7466859_7466993_7470398_7470577_7471482
ENSMUST00000033485.14	chrX	+	2301	9	FSM	ENSMUSG00000031145.16	ENSMUST00000033485.14	2301	9	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	5.54526825320471	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATTGTTTATTTAGCC	NA	False	NA	97	True	AAAAAG	-31	NA	7523498	7534197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7523740_7524859_7524946_7525774_7525959_7529703_7529818_7530091_7530230_7531168_7531373_7531465_7531653_7532510_7532811_7533350
ENSMUST00000033486.6	chrX	-	1157	5	FSM	ENSMUSG00000031146.7	ENSMUST00000033486.6	1157	5	0	0	0	0	multi-exon	FALSE	canonical	3	2052	junction_4	105.587641322268	19576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAAGTTAACTTTTTTT	NA	False	NA	NA	False	AATAAA	-28	NA	7537629	7534179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537381
ENSMUST00000033489.8	chrX	+	1339	3	FSM	ENSMUSG00000031149.8	ENSMUST00000033489.8	1339	3	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_2	75.5	1100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCCTCCTGTGTGAAG	1170	False	NA	7	True	AATAAA	-20	NA	7594677	7597303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7595002_7595954_7596173_7596506
ENSMUST00000033495.15	chrX	+	2045	6	FSM	ENSMUSG00000031155.18	ENSMUST00000033495.15	2045	6	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_5	7.30479294709987	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGATTGCCATTTATAGAA	NA	False	NA	5	True	AATAAA	-15	NA	7744540	7749671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7744796_7744922_7745033_7745866_7745918_7747486_7747860_7748311_7748489_7748592
ENSMUST00000033497.9	chrX	-	1104	7	FSM	ENSMUSG00000031157.11	ENSMUST00000033497.9	1104	7	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_6	154.654902569847	2532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGGCTTGAGTGCTTC	296	False	NA	-1	True	AATAAA	-22	NA	7765508	7760757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765407
ENSMUST00000033500.5	chrX	-	1077	2	FSM	ENSMUSG00000031160.5	ENSMUST00000033500.5	1077	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	422	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCTTTGTTTTTCTTTT	NA	False	NA	NA	False	AATAAA	-31	NA	7794846	7790514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_7791453_7794707
ENSMUST00000033503.3	chrX	-	673	4	FSM	ENSMUSG00000031163.3	ENSMUST00000033503.3	673	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	18.5472369909914	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCACTCTTGGCAGAG	NA	False	NA	-9	True	AATAAA	-21	NA	7884731	7870438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_7870742_7871941_7872098_7881456_7881595_7884655
ENSMUST00000033519.3	chrX	-	2176	5	FSM	ENSMUSG00000031176.9	ENSMUST00000033519.3	2176	5	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_4	27.1523479647709	832	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGGCTCTGGTTGATCC	NA	False	NA	-1	True	AATAAA	-21	NA	9529242	9520505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_9522303_9522618_9522697_9523279_9523404_9527218_9527261_9529107
ENSMUST00000033522.15	chrX	+	1649	4	FSM	ENSMUSG00000031179.15	ENSMUST00000033522.15	1649	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1.69967317119759	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTTTAGTCTCCCGTT	NA	False	NA	NA	False	AATAAA	-20	NA	63217153	63222384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_63217298_63219533_63219620_63220397_63220469_63221036
ENSMUST00000033540.6	chrX	+	1595	6	FSM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	0	0	0	0	multi-exon	FALSE	canonical	3	1794	junction_5	66.7580706731403	15878	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGACAATTTTTTCATT	NA	False	NA	14	True	ATTAAA	-20	NA	74557904	74578548	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
ENSMUST00000033541.5	chrX	+	2562	5	FSM	ENSMUSG00000031198.5	ENSMUST00000033541.5	2562	5	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	30.589009464185	3669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTCAGACTCCACTTGT	537	False	NA	NA	False	AATAAA	-21	NA	74426004	74440065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_74426058_74430707_74430859_74434389_74434466_74435245_74435378_74437915
ENSMUST00000033543.14	chrX	-	992	3	FSM	ENSMUSG00000090110.9	ENSMUST00000033543.14	992	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	10	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGGTTTGTTACTAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	74460171	74448451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_74448825_74453151_74453220_74459620
ENSMUST00000033570.6	chrX	+	1518	6	FSM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_5	20.4743742273116	5312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGGACTTTGTCCT	NA	False	NA	NA	False	NA	NA	NA	99537896	99559731	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_99538163_99538510_99538805_99546600_99546797_99548795_99548876_99549545_99549659_99559162
ENSMUST00000033582.5	chrX	+	1001	3	FSM	ENSMUSG00000031231.5	ENSMUST00000033582.5	1001	3	0	0	0	0	multi-exon	FALSE	canonical	3	7724	junction_1	851.5	73184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGGGTTTAAAGTGATAA	NA	False	NA	NA	False	AATAAA	-14	NA	105059305	105066056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_105059477_105063184_105063310_105065351
ENSMUST00000033591.6	chrX	-	1744	6	FSM	ENSMUSG00000031239.6	ENSMUST00000033591.6	1744	6	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	8.06473806146238	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCATTCCCATCTCTAC	NA	False	NA	NA	False	TATAAA	-18	NA	106446982	106440704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_106441586_106441701_106441853_106442376_106442488_106442701_106442900_106443172_106443305_106446711
ENSMUST00000033597.9	chrX	-	1934	6	FSM	ENSMUSG00000031245.9	ENSMUST00000033597.9	1934	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	41.3424721079908	995	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTTTGCAATATTTCA	NA	False	NA	1	True	AATAAA	-19	NA	108057010	108048139	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_108049678_108051767_108051903_108054159_108054214_108054462_108054493_108055027_108055052_108056857
ENSMUST00000033598.9	chrX	+	2882	4	FSM	ENSMUSG00000031246.15	ENSMUST00000033598.9	2882	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	2.86744175568088	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGATTACTTTTAATTT	NA	False	NA	NA	False	AATAAA	-18	NA	108138970	108206077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_108139244_108193520_108193707_108197911_108197993_108203735
ENSMUST00000033662.9	chrX	-	2848	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	0	0	0	0	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	3167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTCTTGAGTTCCCTTTC	NA	False	NA	-1	True	ATTAAA	-24	NA	158921409	158905204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
ENSMUST00000033664.14	chrX	-	1670	8	FSM	ENSMUSG00000031304.19	ENSMUST00000033664.14	1670	8	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	5.61702950038214	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTTACAGGGGTTGGG	NA	False	NA	NA	False	AATAAA	-26	NA	100311861	100307983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_100308644_100308981_100309049_100309235_100309333_100309786_100309950_100310583_100310727_100310916_100311102_100311316_100311471_100311660
ENSMUST00000033673.7	chrX	+	2562	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	0	0	0	0	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	13631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	20	True	ATTAAA	-21	NA	100473160	100492197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
ENSMUST00000033683.8	chrX	-	975	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	0	0	0	0	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	396885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTTGCTGTTGCTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	101233000	101228546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
ENSMUST00000033691.5	chrX	+	812	7	FSM	ENSMUSG00000031329.5	ENSMUST00000033691.5	812	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	4.2687494916219	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTTTGCGTTTCTGTGT	NA	False	NA	1	True	AATAAA	-10	NA	102458072	102468186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_102458253_102459640_102459677_102460356_102460394_102461814_102461897_102464105_102464207_102465593_102465653_102467869
ENSMUST00000033700.12	chrX	+	3316	15	FSM	ENSMUSG00000031337.17	ENSMUST00000033700.12	3316	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_10	89.0701683952556	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAAATATATTAACTAAA	NA	False	NA	-14	True	AATAAA	-18	NA	70258644	70358871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339954_70343171_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
ENSMUST00000033713.11	chrX	-	1026	4	FSM	ENSMUSG00000031347.13	ENSMUST00000033713.11	1026	4	0	0	0	0	multi-exon	FALSE	canonical	3	611	junction_2	29.9146935282461	2702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTCATTCTTTAAAGGAT	NA	False	NA	-13	True	AATAAA	-17	NA	71960462	71957309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293
ENSMUST00000033715.5	chrX	+	2168	8	FSM	ENSMUSG00000031349.5	ENSMUST00000033715.5	2168	8	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_6	28.7537042866494	1338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTTTGTGTTGCTGGCT	NA	False	NA	NA	False	AATAAA	-6	NA	71962162	72002120	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_71962300_71969899_71970017_71973229_71973389_71992770_71992918_71996448_71996578_71998677_71998821_71999942_72000046_72000887
ENSMUST00000033720.12	chrX	+	2244	12	FSM	ENSMUSG00000031353.14	ENSMUST00000033720.12	2244	12	0	0	0	0	multi-exon	FALSE	canonical	3	2711	junction_3	173.446540695797	17909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTATATCTGCATCATTT	NA	False	NA	NA	False	AATAAA	-17	NA	161543397	161562088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
ENSMUST00000033723.4	chrX	-	2087	9	FSM	ENSMUSG00000031357.4	ENSMUST00000033723.4	2087	9	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	15.2105021284637	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTTATAGAATGGTCTT	NA	False	NA	NA	False	TATAAA	-15	NA	161671443	161640052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_161641005_161642294_161642443_161642868_161642928_161646055_161646205_161655510_161655651_161661326_161661401_161665675_161665743_161665963_161666083_161671064
ENSMUST00000033725.16	chrX	-	2399	13	FSM	ENSMUSG00000031358.18	ENSMUST00000033725.16	2399	13	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_12	12.277746354912	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAGAGGAGTTTTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	167456894	167437112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167455258_167455342_167456723
ENSMUST00000033737.15	chrX	+	1380	10	Antisense	novelGene_ENSMUSG00000031371.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2511	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCGGCAGGAGCGAAGCCA	NA	False	NA	NA	False	NA	NA	NA	72480920	72502650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chrX_+_72481172_72489415_72489531_72490533_72490744_72491565_72491663_72491797_72491957_72492416_72492509_72496604_72496667_72498472_72498541_72501579_72501696_72502440
ENSMUST00000033749.9	chrX	+	1599	10	FSM	ENSMUSG00000031379.14	ENSMUST00000033749.9	1599	10	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_3	17.8270151493682	2260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGTGCTTTTTTATATG	NA	False	NA	NA	False	TATAAA	-15	NA	163052426	163156007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
ENSMUST00000033754.15	chrX	+	3594	6	FSM	ENSMUSG00000031381.17	ENSMUST00000033754.15	3594	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	38.4052079801685	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTCTCAGTTTGTCTT	NA	False	NA	28	True	AATAAA	-28	NA	163202782	163216912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_163202837_163205579_163206360_163210927_163211061_163211535_163211669_163211806_163212014_163214625
ENSMUST00000033763.15	chrX	-	962	8	FSM	ENSMUSG00000031388.15	ENSMUST00000033763.15	962	8	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_1	315.02562254068	1733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGGGTATGCTTTTTTT	NA	False	NA	-1	True	AATAAA	-38	NA	72965550	72960478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72960802_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUST00000033776.15	chrX	+	2804	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	0	0	0	0	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	6772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	34	True	ATTAAA	-21	NA	74139459	74153383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
ENSMUST00000033805.15	chrX	-	1430	5	FSM	ENSMUSG00000031429.15	ENSMUST00000033805.15	1430	5	0	0	0	0	multi-exon	FALSE	canonical	3	522	junction_1	39.0024037720754	3330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCCCAATTTCTCATTC	NA	False	NA	-8	True	AATAAA	-11	NA	139857438	139849177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_139850059_139852895_139853063_139853153_139853301_139854548_139854648_139857302
ENSMUST00000033809.4	chrX	+	1965	7	FSM	ENSMUSG00000031432.4	ENSMUST00000033809.4	1965	7	0	0	0	0	multi-exon	FALSE	canonical	3	1771	junction_6	191.019850626403	12508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	27	True	AATAAA	-19	NA	139357361	139376889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917
ENSMUST00000033839.9	chr8	-	793	4	FSM	ENSMUSG00000031458.9	ENSMUST00000033839.9	793	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	307.613393726606	5235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGTATGCTCTGTCTGCG	NA	False	NA	-8	True	AATAAA	-16	NA	13940268	13934793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_13935202_13935665_13935882_13937759_13937827_13940166
ENSMUST00000033847.5	chr8	+	2841	8	FSM	ENSMUSG00000031467.11	ENSMUST00000033847.5	2841	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	241.544266446259	1207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTCTTGTTTTTTCAA	NA	False	NA	15	True	AATAAA	-25	NA	18896294	18933437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_18896795_18911492_18911563_18918908_18919025_18920853_18920944_18926055_18926147_18928022_18928185_18929620_18929749_18931753
ENSMUST00000033866.9	chr8	+	3574	14	FSM	ENSMUSG00000031479.10	ENSMUST00000033866.9	3574	14	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_5	36.370219952707	2162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGAATTTTTCTGTTTT	NA	False	NA	9	True	GATAAA	-22	NA	22682824	22710859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_22682983_22688913_22688983_22692289_22692361_22695682_22695798_22696792_22696883_22697872_22697960_22700284_22700318_22700404_22700483_22701553_22701689_22703510_22703577_22706527_22706593_22707140_22707226_22708227_22708305_22708414
ENSMUST00000033877.6	chr8	-	1899	4	FSM	ENSMUSG00000031487.6	ENSMUST00000033877.6	1899	4	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	8.9938250421547	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAACCAGAGCTTTTAAA	NA	False	NA	-26	True	ATTAAA	-35	NA	27618708	27613391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_27614649_27615847_27616170_27617487_27617548_27618448
ENSMUST00000033880.7	chr8	+	1997	3	FSM	ENSMUSG00000031490.7	ENSMUST00000033880.7	1997	3	0	0	0	0	multi-exon	FALSE	canonical	3	14377	junction_1	319.5	84856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGATTGGTTCCCAGTGG	NA	False	NA	15	True	NA	NA	NA	27750356	27766702	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_27750579_27763350_27763531_27765107
ENSMUST00000033901.11	chr8	+	1359	10	FSM	ENSMUSG00000031505.12	ENSMUST00000033901.11	1359	10	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	63.9388210675343	1394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	33	True	NA	NA	NA	11547567	11563287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_11547741_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
ENSMUST00000033905.13	chr8	-	2285	6	FSM	ENSMUSG00000031508.15	ENSMUST00000033905.13	2285	6	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_3	111.790876193006	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGTCTCTGAAACTGC	NA	False	NA	-3	True	AATAAA	-14	NA	11685754	11661583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
ENSMUST00000033910.9	chr8	-	2879	4	FSM	ENSMUSG00000031513.9	ENSMUST00000033910.9	2879	4	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_3	12.9614813968157	2810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTAGCTTGTGGGTGTTTT	8786	False	NA	-4	True	AATAAA	-16	NA	34614187	34602725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_34604993_34606007_34606195_34607914_34607991_34613838
ENSMUST00000033920.6	chr8	+	1181	9	FSM	ENSMUSG00000031521.6	ENSMUST00000033920.6	1181	9	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_3	34.8440723079264	1422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTGACATTATGGAATGT	NA	False	NA	-61	True	NA	NA	NA	53964761	53976373	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950_53972027_53973271_53973380_53974084_53974219_53976210
ENSMUST00000033933.8	chr8	+	1860	6	FSM	ENSMUSG00000031532.8	ENSMUST00000033933.8	1860	6	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	37.2633868562695	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTCTTGTTCTTTGTACT	NA	False	NA	9	True	AATAAA	-16	NA	34621729	34637975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_34621991_34628348_34628528_34632294_34632695_34634872_34635012_34635610_34635766_34637249
ENSMUST00000033934.5	chr8	+	1515	7	FSM	ENSMUSG00000031533.5	ENSMUST00000033934.5	1515	7	0	0	0	0	multi-exon	FALSE	canonical	3	683	junction_2	48.7100263463968	3452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCCTTGTGTAATTTGC	NA	False	NA	NA	False	NA	NA	NA	22901376	22919681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911467_22914362_22914437_22917763_22917908_22919196
ENSMUST00000033938.7	chr8	-	1201	14	FSM	ENSMUSG00000031536.7	ENSMUST00000033938.7	1201	14	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_8	16.1157058899497	1117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCTTAACAAATGTGTTT	NA	False	NA	NA	False	AATAAA	-20	NA	23143434	23118141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_23118386_23120358_23120499_23121470_23121536_23127083_23127171_23129949_23130021_23130374_23130448_23130528_23130584_23132320_23132373_23135060_23135111_23137428_23137488_23138197_23138273_23140504_23140572_23143075_23143134_23143329
ENSMUST00000033950.7	chr8	+	1349	8	Antisense	novelGene_ENSMUSG00000031546.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGTCGACAGGAAAACGTC	NA	False	NA	NA	False	NA	NA	NA	23716631	23727675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr8_+_23717192_23717264_23717356_23719431_23719521_23719621_23719720_23722620_23722735_23724769_23724857_23726995_23727116_23727485
ENSMUST00000033961.7	chr8	+	1281	4	FSM	ENSMUSG00000031556.7	ENSMUST00000033961.7	1281	4	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_1	26.3185612575358	1821	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGAGTATTTC	NA	False	NA	14	True	AATAAA	-14	NA	25507226	25513276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_25507609_25508081_25508170_25510454_25510571_25512581
ENSMUST00000033973.14	chr8	+	2921	8	FSM	ENSMUSG00000031568.17	ENSMUST00000033973.14	2921	8	0	0	0	0	multi-exon	FALSE	canonical	2	108	junction_6	33.1305395830075	1244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTCTATATGTTTTGT	NA	False	NA	7	True	AATAAA	-17	NA	47986698	48005860	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_47986979_47990313_47990395_47995726_47995837_47995916_47996065_47997145_47997264_48000823_48000874_48001006_48001010_48003729
ENSMUST00000033983.6	chr8	-	1902	10	FSM	ENSMUSG00000031578.6	ENSMUST00000033983.6	1902	10	0	0	0	0	multi-exon	FALSE	canonical	3	742	junction_2	38.8285245790727	2622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGTCTTGAGAATTCTG	NA	False	NA	-2	True	TATAAA	-20	NA	31658792	31649490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
ENSMUST00000033999.8	chr8	-	1039	9	FSM	ENSMUSG00000031590.9	ENSMUST00000033999.8	1039	9	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_1	88.4737778949221	7490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGTTCTCGAGTCCTTT	NA	False	NA	-7	True	AATAAA	-23	NA	41870111	41850495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_41850682_41851992_41852104_41852601_41852694_41853798_41853904_41860681_41860797_41863300_41863359_41864259_41864386_41867839_41867911_41869936
ENSMUST00000034000.15	chr8	-	2773	14	FSM	ENSMUSG00000031591.15	ENSMUST00000034000.15	2773	14	0	0	0	0	multi-exon	FALSE	canonical	3	999	junction_6	169.669117600863	3466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATTTTTTTAAATAACTT	7501	False	NA	NA	False	NA	NA	NA	41827810	41793233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827546
ENSMUST00000034012.10	chr8	-	2615	7	FSM	ENSMUSG00000031601.17	ENSMUST00000034012.10	2615	7	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_2	67.4388612003495	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGTGACTGATGGCTT	NA	False	NA	-1	True	AATAAA	-23	NA	40964795	40945580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
ENSMUST00000034015.11	chr8	-	2044	6	FSM	ENSMUSG00000031604.11	ENSMUST00000034015.11	2044	6	0	0	0	0	multi-exon	FALSE	canonical	3	690	junction_2	21.3822356174466	3234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGGTTCTGTTTTTTCC	NA	False	NA	-17	True	AATAAA	-1	NA	65186826	65171172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657_65180943_65186541
ENSMUST00000034030.15	chr8	-	2678	10	FSM	ENSMUSG00000031617.17	ENSMUST00000034030.15	2678	10	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_5	10.9927024053615	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTCTTACGTGTCTTCT	NA	False	NA	-4	True	TTTAAA	-6	NA	78337282	78322610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_78323810_78324437_78324610_78325182_78325283_78326285_78326399_78328043_78328138_78329486_78329562_78331250_78331457_78332792_78332830_78332915_78333047_78336731
ENSMUST00000034051.7	chr8	+	1640	12	FSM	ENSMUSG00000031634.14	ENSMUST00000034051.7	1640	12	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_6	20.6765727613893	1285	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGTAGTCATGTAAATAC	8860	False	NA	104	True	AGTAAA	-19	NA	46428564	46449995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_46428626_46432245_46432333_46433351_46433530_46433609_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
ENSMUST00000034079.14	chr8	+	3251	15	FSM	ENSMUSG00000031657.17	ENSMUST00000034079.14	3251	15	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_7	19.6926641267291	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTGTCATACAGATT	NA	False	NA	NA	False	AATAAA	-16	NA	88864482	88898655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_88864786_88864902_88865076_88866519_88866608_88868299_88868410_88871156_88871267_88874174_88874316_88876719_88876998_88883089_88883181_88883297_88883456_88883680_88883764_88884756_88884894_88888505_88888595_88891515_88891660_88893623_88893801_88897486
ENSMUST00000034094.11	chr8	+	2519	3	FSM	ENSMUSG00000031669.11	ENSMUST00000034094.11	2519	3	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_2	2	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTGTTGTCACTAACTG	NA	False	NA	NA	False	AATAAA	-14	NA	96360080	96371688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_96360412_96364437_96364672_96369734
ENSMUST00000034097.8	chr8	-	2530	10	FSM	ENSMUSG00000031672.9	ENSMUST00000034097.8	2530	10	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_1	94.2456731822753	3010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGTCTGCTTTTCTACT	NA	False	NA	-4	True	AATAAA	-17	NA	96615175	96590761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_96591880_96593448_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
ENSMUST00000034111.10	chr8	+	3595	12	FSM	ENSMUSG00000031684.12	ENSMUST00000034111.10	3595	12	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_5	15.4524062690615	243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCTGGAAATGTCGTGG	NA	False	NA	32	True	ATTAAA	-17	NA	79235996	79460632	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_79236304_79242214_79242298_79251790_79251928_79257711_79257788_79305347_79305387_79389615_79389652_79413213_79413298_79423794_79423961_79425148_79425201_79433503_79433578_79456246_79456393_79458237
ENSMUST00000034132.13	chr8	+	1287	7	FSM	ENSMUSG00000031697.13	ENSMUST00000034132.13	1287	7	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_2	81.7626986399598	4589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATGTGTATGAGTAT	NA	False	NA	9	True	AATAAA	-17	NA	86026419	86034700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
ENSMUST00000034136.12	chr8	+	3639	12	FSM	ENSMUSG00000031700.12	ENSMUST00000034136.12	3639	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	271.645643020279	810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGCAGCTTGGTCAATAA	NA	False	NA	13	True	AATAAA	-19	NA	86219204	86254189	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_86219319_86219533_86219799_86229893_86229984_86232207_86232317_86235807_86235939_86238741_86238986_86242786_86242867_86244605_86244743_86246076_86246252_86247967_86248124_86249884_86249998_86252164
ENSMUST00000034138.7	chr8	-	2919	9	FSM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	0	0	0	0	multi-exon	FALSE	canonical	3	694	junction_1	52.4486355875918	3931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCAGCATTCTTCAGT	NA	False	NA	NA	False	AATAAA	-15	NA	86281973	86264261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
ENSMUST00000034141.18	chr8	+	2859	15	FSM	ENSMUSG00000047866.21	ENSMUST00000034141.18	2859	15	0	0	0	0	multi-exon	TRUE	canonical	3	174	junction_5	34.038693468775	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAATTCTGGTCTCCAGTG	NA	False	NA	NA	False	AATAAA	-12	NA	87350671	87443259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_87351045_87358013_87358249_87360496_87360629_87361424_87361548_87363106_87363271_87364530_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
ENSMUST00000034147.4	chr8	-	1675	10	FSM	ENSMUSG00000031711.8	ENSMUST00000034147.4	1675	10	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	43.069567612422	2904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTTTGGTACTGAGTT	NA	False	NA	-17	True	AATAAA	-17	NA	83500789	83490249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
ENSMUST00000034164.6	chr8	-	2304	10	FSM	ENSMUSG00000031729.7	ENSMUST00000034164.6	2304	10	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_2	71.0226880807973	660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGTGTTGGTCAAATGAG	NA	False	NA	-13	True	AATAAA	-20	NA	110419892	110397956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_110399274_110402007_110402057_110403389_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
ENSMUST00000034203.17	chr8	+	2737	19	FSM	ENSMUSG00000031753.17	ENSMUST00000034203.17	2737	19	0	0	0	0	multi-exon	FALSE	canonical	3	332	junction_8	32.668367302671	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATTGTGTTGGGTCCAG	9628	False	NA	13	True	AATAAA	-18	NA	111573665	111608859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_111573842_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
ENSMUST00000034205.5	chr8	+	1768	12	FSM	ENSMUSG00000031756.6	ENSMUST00000034205.5	1768	12	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	41.3065540194129	733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATCAGTTCCTTTGGATG	NA	False	NA	8	True	AATAAA	-16	NA	117648478	117668242	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_117648523_117649066_117649181_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117662991_117663900_117664014_117667182_117667310_117667573
ENSMUST00000034207.8	chr8	+	398	3	FSM	ENSMUSG00000031757.8	ENSMUST00000034207.8	398	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGTGGCTCAGAGTAT	6281	False	NA	NA	False	AATAAA	-16	NA	94863824	94865659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_94863901_94864858_94864925_94865403
ENSMUST00000034214.8	chr8	+	511	3	FSM	ENSMUSG00000031762.8	ENSMUST00000034214.8	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	13494	junction_2	132	170900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTCTCTGTGCATTGGT	NA	False	NA	37	True	AATAAA	-23	NA	94899291	94900196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_94899504_94899754_94899821_94899963
ENSMUST00000034215.8	chr8	-	549	3	Antisense	novelGene_ENSMUSG00000031765.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	202762	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCGCCAGTGTGCACAGC	NA	False	NA	NA	False	NA	NA	NA	94906955	94905709	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr8_-_94905967_94906450_94906517_94906729
ENSMUST00000034220.8	chr8	+	1873	8	FSM	ENSMUSG00000031770.17	ENSMUST00000034220.8	1873	8	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	160.784175279808	795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGAGACTCCCATTGTCC	NA	False	NA	28	True	AATAAA	-21	NA	95113122	95121986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_95113367_95115983_95116062_95116151_95116224_95117345_95117477_95118359_95118483_95118801_95119153_95120423_95120530_95121218
ENSMUST00000034234.15	chr8	+	1789	9	FSM	ENSMUSG00000031782.16	ENSMUST00000034234.15	1789	9	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_5	12.7322179921646	352	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTTGTTTTGTCTAT	NA	False	NA	9	True	AATAAA	-15	NA	95564948	95581523	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_95565126_95569245_95569397_95571404_95571541_95576752_95576896_95577142_95577228_95578478_95578584_95579742_95579899_95580232_95580287_95580741
ENSMUST00000034245.16	chr8	+	1758	7	FSM	ENSMUSG00000031792.16	ENSMUST00000034245.16	1758	7	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_6	19.6185852927495	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGTGTCTTATTTTAA	NA	False	NA	12	True	AATAAA	-13	NA	96058911	96074135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_96059094_96059995_96060163_96065261_96065446_96069749_96069804_96070584_96070691_96071916_96072001_96073154
ENSMUST00000034249.8	chr8	-	1295	6	FSM	ENSMUSG00000031796.8	ENSMUST00000034249.8	1295	6	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_1	23.7200337267888	2557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTTTACTTTTTTATA	NA	False	NA	-6	True	AATAAA	-24	NA	96161497	96146876	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149523_96151244_96151325_96161115
ENSMUST00000034264.11	chr8	+	893	5	FSM	ENSMUSG00000031807.11	ENSMUST00000034264.11	893	5	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_2	58.7132864009502	1890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTTTCTGTGGTTCTT	NA	False	NA	15	True	ATTAAA	-15	NA	72044819	72048913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_72045149_72046727_72046836_72047312_72047415_72047704_72047846_72048700
ENSMUST00000034265.11	chr8	-	1084	7	FSM	ENSMUSG00000031809.11	ENSMUST00000034265.11	1084	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	4.45034330760623	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAGCCACTGACAAAAACG	NA	False	NA	NA	False	AATAAA	-22	NA	122268693	122257518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_122257781_122258436_122258654_122260433_122260471_122262161_122262309_122266605_122266747_122267275_122267320_122268457
ENSMUST00000034272.9	chr8	+	1062	9	FSM	ENSMUSG00000031813.9	ENSMUST00000034272.9	1062	9	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_1	32.3177582762171	3535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGAGTGTATTGTTTT	NA	False	NA	11	True	AGTAAA	-18	NA	71995573	72000670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71995702_71995776_71995876_71996030_71996128_71997867_71997995_71998190_71998311_71998393_71998501_71999616_71999679_72000221_72000279_72000405
ENSMUST00000034276.13	chr8	+	745	5	FSM	ENSMUSG00000031818.13	ENSMUST00000034276.13	745	5	0	0	0	0	multi-exon	FALSE	canonical	3	8115	junction_1	456.952609687263	107272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	28	True	AATAAA	-17	NA	121394960	121400946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_121395095_121396047_121396122_121399463_121399632_121399959_121400092_121400709
ENSMUST00000034285.14	chr8	-	1596	4	FSM	ENSMUSG00000031827.14	ENSMUST00000034285.14	1596	4	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	12.9185482500507	1512	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGAGTTGGGTTGTCT	NA	False	NA	NA	False	AGTAAA	-14	NA	120567283	120535960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_120537095_120549392_120549551_120566880_120566964_120567062
ENSMUST00000034300.8	chr8	+	1208	4	FSM	ENSMUSG00000031839.8	ENSMUST00000034300.8	1208	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	885.438121308692	13841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGAAGAATGGTGTGGTC	NA	False	NA	NA	False	AATAAA	-18	NA	120071226	120075661	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_120071360_120071674_120071742_120072351_120072473_120074774
ENSMUST00000034301.12	chr8	+	1363	5	FSM	ENSMUSG00000031840.15	ENSMUST00000034301.12	1363	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	7.43303437365925	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACACGCAGTCCTTGACAT	NA	False	NA	46	True	NA	NA	NA	71207359	71211281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71207513_71208502_71208731_71209093_71209213_71209783_71209909_71210543
ENSMUST00000034303.3	chr8	-	1068	5	FSM	ENSMUSG00000031843.3	ENSMUST00000034303.3	1068	5	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_1	47.4572175754121	6401	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTTGAAGTAATTTTAG	NA	False	NA	-12	True	AATAAA	-22	NA	118528682	118518383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_118519058_118519417_118519516_118521319_118521411_118525782_118525896_118528590
ENSMUST00000034311.15	chr8	+	925	5	FSM	ENSMUSG00000031848.16	ENSMUST00000034311.15	925	5	0	0	0	0	multi-exon	FALSE	canonical	3	2963	junction_1	310.191070148707	32746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTTCTTCTGCCTA	NA	False	NA	20	True	AATAAA	-20	NA	71125897	71131402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71126108_71129204_71129247_71130427_71130527_71130603_71130785_71131009
ENSMUST00000034313.13	chr8	+	1155	5	FSM	ENSMUSG00000031851.15	ENSMUST00000034313.13	1155	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	22.4388056723169	1050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGAGTCCTTGTGTGGG	NA	False	NA	23	True	AATAAA	-31	NA	126460941	126474974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126471974_126472185_126474436
ENSMUST00000034342.13	chr8	+	667	4	FSM	ENSMUSG00000054400.17	ENSMUST00000034342.13	667	4	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_3	21.1397466609439	2586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTCTGCAGATCTCCTT	4792	False	NA	10	True	ATTAAA	-22	NA	104977492	104990079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_104977728_104983916_104984076_104988105_104988202_104989902
ENSMUST00000034343.5	chr8	+	1616	5	FSM	ENSMUSG00000031875.8	ENSMUST00000034343.5	1616	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	6.68954408012983	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGAGTGCGCCTGACT	NA	False	NA	13	True	ATTAAA	-15	NA	105067225	105074304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_105067528_105070389_105070546_105071408_105071505_105071903_105072025_105073363
ENSMUST00000034349.10	chr8	-	1808	20	FSM	ENSMUSG00000031878.19	ENSMUST00000034349.10	1808	20	0	0	0	0	multi-exon	FALSE	canonical	3	645	junction_15	52.7352662859429	2797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3333	False	NA	NA	False	AATAAA	-19	NA	105261269	105237659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
ENSMUST00000034359.10	chr8	-	1689	5	FSM	ENSMUSG00000031887.14	ENSMUST00000034359.10	1689	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	9.66953980290686	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGTGCACGCCTTTAAT	505	False	NA	NA	False	AAAACA	-43	NA	105991241	105984917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_105985928_105986068_105986262_105986341_105986620_105987153_105987313_105991192
ENSMUST00000034361.10	chr8	+	2916	16	FSM	ENSMUSG00000031889.10	ENSMUST00000034361.10	2916	16	0	0	0	0	multi-exon	TRUE	canonical	3	239	junction_9	14.7126551724093	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTGTTGATTTCCTT	NA	False	NA	NA	False	ACTAAA	-2	NA	105951776	105979685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350_105977424_105978229
ENSMUST00000034371.9	chr8	-	1698	10	FSM	ENSMUSG00000031898.10	ENSMUST00000034371.9	1698	10	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	8.79955105476592	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGAGCCCTCGTCCTC	NA	False	NA	1	True	AATAAA	-21	NA	106706061	106700144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_106700484_106701326_106701463_106701813_106701890_106702751_106702837_106703892_106704070_106704191_106704262_106704531_106704674_106704773_106704904_106705343_106705471_106705645
ENSMUST00000034375.11	chr8	+	1860	16	FSM	ENSMUSG00000031901.13	ENSMUST00000034375.11	1860	16	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_9	22.4047613987146	660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCCACCTGCTTCAACCT	NA	False	NA	12	True	AATAAA	-12	NA	106738138	106780451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106758329_106758374_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
ENSMUST00000034377.8	chr8	+	2706	6	FSM	ENSMUSG00000031903.8	ENSMUST00000034377.8	2706	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_2	8.49941174435031	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCCTTGTCCTGCTCTGA	6197	False	NA	14	True	AATAAA	-20	NA	106877030	106891347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106877246_106881499_106881657_106886794_106886914_106887212_106887312_106887715_106887941_106889456
ENSMUST00000034388.10	chr8	+	2178	11	FSM	ENSMUSG00000031913.10	ENSMUST00000034388.10	2178	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_10	19.6532440070335	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTACTGGAGTCGTCTCAT	NA	False	NA	17	True	AATAAA	-17	NA	107757853	107772387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_107758124_107763268_107763381_107763474_107763623_107765559_107765622_107765721_107765842_107767505_107767663_107768823_107768973_107769245_107769328_107769543_107769764_107771086_107771228_107771670
ENSMUST00000034398.12	chr9	-	2523	11	FSM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_4	39.1587793476763	693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCTAACAAAGGCTTTAT	NA	False	NA	NA	False	AATAAA	-26	NA	13738403	13719089	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
ENSMUST00000034405.11	chr9	+	3286	20	FSM	ENSMUSG00000031928.16	ENSMUST00000034405.11	3286	20	0	0	0	0	multi-exon	TRUE	canonical	3	154	junction_1	46.9081733954962	537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAATAATCTCATTCCCT	NA	False	NA	9	True	AATAAA	-27	NA	14695949	14745942	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_14696054_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14714059_14714246_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
ENSMUST00000034426.14	chr8	-	2008	14	FSM	ENSMUSG00000031948.15	ENSMUST00000034426.14	2008	14	0	0	0	0	multi-exon	FALSE	canonical	3	1149	junction_10	189.523538373557	1720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737955	112720074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112737841
ENSMUST00000034428.8	chr8	+	1677	4	FSM	ENSMUSG00000031950.8	ENSMUST00000034428.8	1677	4	0	0	0	0	multi-exon	FALSE	canonical	3	2738	junction_1	80.3838015744189	28622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATAAAACATGTACT	NA	False	NA	NA	False	NA	NA	NA	112667334	112680244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_112667485_112667791_112667848_112669133_112669307_112678946
ENSMUST00000034429.9	chr8	-	2984	7	FSM	ENSMUSG00000031951.9	ENSMUST00000034429.9	2984	7	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	6.79256129077161	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCCCTTGGCTTCTGAA	NA	False	NA	-4	True	ATTAAA	-15	NA	112660513	112638642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_112640742_112641120_112641227_112641888_112641971_112644922_112645067_112645459_112645589_112659991_112660162_112660259
ENSMUST00000034432.7	chr8	-	1178	7	FSM	ENSMUSG00000031954.7	ENSMUST00000034432.7	1178	7	0	0	0	0	multi-exon	FALSE	canonical	3	1827	junction_5	79.8013157786261	13596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGGTTGGTGAGAGTAA	NA	False	NA	-23	True	AATAAA	-15	NA	112580923	112495122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_112495420_112505882_112506042_112557501_112557622_112566989_112567118_112568414_112568623_112571725_112571844_112580775
ENSMUST00000034463.4	chr8	+	1165	6	FSM	ENSMUSG00000031982.6	ENSMUST00000034463.4	1165	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	35.5111250173801	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAAGGTTGTCTTTTGAA	NA	False	NA	21	True	AATAAA	-30	NA	125448877	125460862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535_125458681_125460545
ENSMUST00000034465.9	chr8	-	2340	7	FSM	ENSMUSG00000031984.9	ENSMUST00000034465.9	2340	7	0	0	0	0	multi-exon	FALSE	canonical	3	1367	junction_2	144.59416385948	5882	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTCTGATGAGGCCTCC	NA	False	NA	NA	False	NA	NA	NA	125589859	125565226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
ENSMUST00000034472.16	chr9	-	1942	9	FSM	ENSMUSG00000031990.16	ENSMUST00000034472.16	1942	9	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_8	42.8396355610082	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	-1	True	ATTAAA	-14	NA	27066689	27008679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
ENSMUST00000034478.3	chr9	-	3259	19	FSM	ENSMUSG00000031995.10	ENSMUST00000034478.3	3259	19	0	0	0	0	multi-exon	FALSE	canonical	3	531	junction_11	45.3756610671839	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTTCTTGCTATACT	NA	False	NA	0	True	AGTAAA	-24	NA	31043149	31000697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011567_31011681_31011792_31014171_31014270_31014981_31015122_31017309_31017551_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31042841
ENSMUST00000034524.5	chr9	-	1077	7	FSM	ENSMUSG00000032026.8	ENSMUST00000034524.5	1077	7	0	0	0	0	multi-exon	FALSE	canonical	3	1058	junction_4	53.1959167188193	5511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCGGCACCCTCTGCTC	NA	False	NA	-1	True	AATAAA	-26	NA	48391911	48379811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_48380247_48383119_48383174_48384331_48384441_48385701_48385814_48386419_48386498_48390609_48390694_48391706
ENSMUST00000034537.8	chr9	-	2095	11	FSM	ENSMUSG00000032038.8	ENSMUST00000034537.8	2095	11	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	8.15107354892593	634	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTTGTGGGGCTCTGTGT	NA	False	NA	-2	True	ATTAAA	-24	NA	35028169	34957871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_34958816_34959114_34959259_34963535_34963680_34964373_34964564_34964667_34964764_34965358_34965420_34965730_34965829_34965997_34966079_34966493_34966579_34966869_34966946_35027993
ENSMUST00000034539.12	chr9	-	1274	6	FSM	ENSMUSG00000032040.16	ENSMUST00000034539.12	1274	6	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_4	33.1083071146804	3542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTGTAGCCCAGTAG	NA	False	NA	-3	True	AATAAA	-22	NA	35087357	35035703	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_35036141_35037602_35037714_35040756_35040871_35047639_35047786_35082372_35082548_35087066
ENSMUST00000034541.12	chr9	+	2993	14	FSM	ENSMUSG00000032042.12	ENSMUST00000034541.12	2993	14	0	0	0	0	multi-exon	FALSE	canonical	3	518	junction_4	138.528744373691	1670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAGGTTCATATTATTT	5512	False	NA	3	True	AATAAA	-18	NA	35122450	35128310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233
ENSMUST00000034543.5	chr9	+	1821	7	FSM	ENSMUSG00000032044.5	ENSMUST00000034543.5	1821	7	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_6	10.6052921799554	670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTAATTTTTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	35179160	35187261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_35179375_35179697_35179864_35181260_35181463_35183829_35183924_35183997_35184143_35184763_35184862_35186359
ENSMUST00000034552.8	chr9	-	875	4	FSM	ENSMUSG00000032051.10	ENSMUST00000034552.8	875	4	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_2	28.5929284186765	744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGTGTGTTTGGTGAT	1037	False	NA	-5	True	AATAAA	-17	NA	51874846	51854605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_51854950_51859876_51860007_51868372_51868498_51874570
ENSMUST00000034564.4	chr9	-	1257	4	FSM	ENSMUSG00000032062.4	ENSMUST00000034564.4	1257	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	2.16024689946929	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGATTGATTGTTCCTG	2116	False	NA	NA	False	AATAAA	-17	NA	50657836	50650990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_50652050_50652595_50652661_50653560_50653599_50657741
ENSMUST00000034568.7	chr9	-	895	5	FSM	ENSMUSG00000032065.7	ENSMUST00000034568.7	895	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	2.27760839478607	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATATTTCCATTTGATT	6977	False	NA	NA	False	AATAAA	-21	NA	50472610	50468224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_50468792_50469548_50469601_50469686_50469799_50470519_50470599_50472525
ENSMUST00000034570.7	chr9	-	1046	6	FSM	ENSMUSG00000032067.7	ENSMUST00000034570.7	1046	6	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_5	16.1294761229248	446	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTTTTCAGGATTTATT	7959	False	NA	NA	False	AATAAA	-18	NA	50439951	50432916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439856
ENSMUST00000034600.5	chr9	+	3107	6	FSM	ENSMUSG00000032092.6	ENSMUST00000034600.5	3107	6	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_5	54.042205728486	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGATTTTTATTATTTGC	NA	False	NA	15	True	AATAAA	-18	NA	44953722	44965313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44954093_44954997_44955165_44955450_44955662_44958461_44958610_44960949_44961023_44963175
ENSMUST00000034623.8	chr9	+	1220	5	NIC	ENSMUSG00000009927.10	novel	1280	5	NA	NA	-3380	-781	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	0	6896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGCGGAGTTTAGCCAAG	NA	False	NA	NA	False	NA	NA	NA	44315055	44318897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr9_+_44315396_44315630_44315758_44316539_44316644_44318100_44318276_44318423
ENSMUST00000034650.15	chr9	+	2989	16	FSM	ENSMUSG00000032135.16	ENSMUST00000034650.15	2989	16	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	5.20085463062456	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCTGTGTTCCATTCAT	78	False	NA	19	True	AATAAA	-21	NA	44045858	44054024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44046054_44047814_44047946_44048034_44048243_44048335_44048407_44048514_44048603_44050131_44050312_44050454_44050577_44050696_44050860_44050949_44051069_44051156_44051299_44051433_44051556_44051658_44051801_44051894_44051991_44052141_44052290_44052571_44052690_44053080
ENSMUST00000034698.9	chr9	-	1378	4	FSM	ENSMUSG00000032180.12	ENSMUST00000034698.9	1378	4	0	0	0	0	multi-exon	FALSE	canonical	3	533	junction_2	14.8548533034381	3690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGCCTGGTGACTGGGCT	NA	False	NA	-5	True	AATAAA	-19	NA	21421548	21418850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21419688_21420226_21420411_21420549_21420648_21421289
ENSMUST00000034700.15	chr9	-	2174	8	FSM	ENSMUSG00000032182.16	ENSMUST00000034700.15	2174	8	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	11.8062591493682	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACGCCCATGGTGACCA	6068	False	NA	-16	True	AATAAA	-17	NA	21504124	21499977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823
ENSMUST00000034738.14	chr9	+	1543	6	FSM	ENSMUSG00000032215.16	ENSMUST00000034738.14	1543	6	0	0	0	0	multi-exon	FALSE	canonical	3	633	junction_5	127.855230632149	1911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTACATATCTCTTATTT	8580	False	NA	13	True	AATAAA	-18	NA	73020729	73030615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_73020866_73022169_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545
ENSMUST00000034742.8	chr9	-	1531	9	FSM	ENSMUSG00000032218.8	ENSMUST00000034742.8	1531	9	0	0	0	0	multi-exon	FALSE	canonical	3	1324	junction_2	68.4557338723353	2845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGTATCCTGTGTATAT	NA	False	NA	-8	True	AATAAA	-14	NA	70328829	70314973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_70315312_70316561_70316673_70317402_70317544_70317936_70318174_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
ENSMUST00000034754.12	chr9	+	2464	11	FSM	ENSMUSG00000011958.18	ENSMUST00000034754.12	2464	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_9	104.017354321286	1518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGACTTCTCTGGTGTATA	NA	False	NA	79	True	AATGAA	-19	NA	69896747	69915599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69911587_69911624_69914345
ENSMUST00000034756.15	chr9	+	1447	13	FSM	ENSMUSG00000032231.15	ENSMUST00000034756.15	1447	13	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_7	12.0908022893437	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGTTGCCTTTGCTTTCA	NA	False	NA	NA	False	AATAAA	-25	NA	69360901	69399077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_69361022_69371741_69371807_69374572_69374673_69383334_69383430_69386959_69387074_69390255_69390347_69391061_69391142_69392479_69392540_69393751_69393846_69394834_69394931_69395336_69395396_69396933_69397057_69398727
ENSMUST00000034803.10	chr9	+	2863	16	FSM	ENSMUSG00000032264.10	ENSMUST00000034803.10	2863	16	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_12	29.9965923990635	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTGAGTGTCTTTAATAA	NA	False	NA	20	True	AGTAAA	-16	NA	48966912	48990072	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_48967088_48968942_48969078_48971869_48971972_48972167_48972246_48972354_48972515_48973492_48973646_48975309_48975502_48977978_48978143_48979959_48980143_48980873_48981113_48982881_48982954_48984502_48984673_48985318_48985450_48986204_48986337_48988751_48988955_48989498
ENSMUST00000034808.12	chr9	-	1043	3	FSM	ENSMUSG00000032271.14	ENSMUST00000034808.12	1043	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	2.5	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCAGTGCTCACTGTATG	NA	False	NA	10	True	ATTAAA	-33	NA	48516453	48503176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_48503663_48514653_48514862_48516104
ENSMUST00000034815.9	chr9	-	3398	23	FSM	ENSMUSG00000032254.11	ENSMUST00000034815.9	3398	23	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	42.1913194628531	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGTGTGGTGGCCATT	NA	False	NA	-3	True	AATAAA	-18	NA	61854056	61824561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
ENSMUST00000034830.9	chr9	+	802	4	FSM	ENSMUSG00000032291.9	ENSMUST00000034830.9	802	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	35.3679076125361	3044	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCGGGCTCTTTCTTTGA	NA	False	NA	18	True	ATTAAA	-14	NA	54672031	54680394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_54672256_54672766_54672946_54675667_54675782_54680109
ENSMUST00000034834.16	chr9	+	2432	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	0	0	0	0	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	25030	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1664	False	NA	20	True	AATAAA	-20	NA	59563650	59586658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
ENSMUST00000034843.9	chr9	+	5770	22	FSM	ENSMUSG00000032293.9	ENSMUST00000034843.9	5770	22	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_6	38.4690587449917	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGACTCGTTGTGTTTTAT	2626	False	NA	14	True	AATAAA	-19	NA	54771072	54819814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_54771181_54772590_54772681_54788636_54788803_54789602_54789741_54791180_54791400_54793158_54793229_54793773_54793958_54794551_54794692_54798286_54798459_54799758_54799857_54802662_54802780_54803723_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
ENSMUST00000034848.14	chr9	+	1165	9	FSM	ENSMUSG00000032301.14	ENSMUST00000034848.14	1165	9	0	0	0	0	multi-exon	FALSE	canonical	3	1650	junction_8	116.746252616519	10640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATGGTGAAAGGATACTT	NA	False	NA	2	True	AATAAA	-15	NA	54858073	54865314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862254_54863540_54863672_54864094_54864219_54864918
ENSMUST00000034856.15	chr9	-	1780	8	FSM	ENSMUSG00000032306.15	ENSMUST00000034856.15	1780	8	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	33.2393914333151	952	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTCAGCCTTTGGTAT	8951	False	NA	-8	True	ATTAAA	-30	NA	57460046	57451538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_57452222_57452477_57452687_57453676_57453851_57455810_57455994_57456319_57456462_57457855_57458057_57459429_57459558_57459986
ENSMUST00000034859.15	chr9	+	2112	7	FSM	ENSMUSG00000032309.16	ENSMUST00000034859.15	2112	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	369.828526331987	3619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTTGTAATTATTGCT	NA	False	NA	11	True	AATAAA	-18	NA	55116208	55131717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
ENSMUST00000034866.9	chr9	-	1392	12	FSM	ENSMUSG00000032314.15	ENSMUST00000034866.9	1392	12	0	0	0	0	multi-exon	FALSE	canonical	3	1517	junction_8	89.5680174619608	6009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTACTATCAGAAACATGC	NA	False	NA	-13	True	AATAAA	-30	NA	55419527	55361791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_55362047_55368903_55368985_55372077_55372144_55389556_55389640_55392553_55392623_55393985_55394088_55394683_55394795_55396113_55396214_55402845_55402929_55403025_55403108_55407301_55407449_55419314
ENSMUST00000034868.14	chr1	-	1796	13	FSM	ENSMUSG00000026034.18	ENSMUST00000034868.14	1796	13	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_9	59.1577458063514	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463225	58451158	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58459279_58459371_58460241_58460468_58460932_58461094_58463078
ENSMUST00000034876.10	chr9	-	1716	7	FSM	ENSMUSG00000032324.12	ENSMUST00000034876.10	1716	7	0	0	0	0	multi-exon	FALSE	canonical	3	718	junction_1	24.1522945769824	2436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGTACATTTTAATTATT	NA	False	NA	-3	True	AATAAA	-17	NA	56068341	56043167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_56044020_56052772_56052857_56053058_56053212_56053797_56053900_56054369_56054445_56054670_56054863_56068083
ENSMUST00000034878.12	chr9	-	3658	7	FSM	ENSMUSG00000032328.13	ENSMUST00000034878.12	3658	7	0	0	0	0	multi-exon	FALSE	canonical	3	408	junction_2	27.5282682992511	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCGTGCTGTTTATGTGTC	NA	False	NA	-9	True	AATAAA	-14	NA	79700712	79676224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_79678762_79681374_79681585_79682383_79682534_79683434_79683523_79684505_79684614_79687822_79687931_79700255
ENSMUST00000034883.7	chr9	+	1984	7	FSM	ENSMUSG00000032333.7	ENSMUST00000034883.7	1984	7	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	85.7729561108861	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAGTGCAGCTGGCTG	NA	False	NA	11	True	AATAAA	-22	NA	58160446	58169803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_58160683_58162216_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
ENSMUST00000034896.13	chr9	+	2366	12	FSM	ENSMUSG00000032342.14	ENSMUST00000034896.13	2366	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_9	10.2457409010559	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTAGGTGATTTTACG	NA	False	NA	19	True	AATAAA	-18	NA	78355489	78381434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_78355793_78356700_78356901_78356999_78357118_78360045_78360336_78364491_78364605_78364697_78364889_78365198_78365330_78368114_78368320_78368801_78368974_78372165_78372285_78377912_78378074_78381071
ENSMUST00000034902.12	chr9	-	870	7	FSM	ENSMUSG00000057933.11	ENSMUST00000034902.12	870	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_6	11.4260910006684	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTCATAAGTTCTA	NA	False	NA	1	True	AATAAA	-17	NA	78254440	78238299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_78238532_78239368_78239501_78241042_78241185_78244840_78244974_78245926_78245979_78249111_78249221_78254370
ENSMUST00000034903.7	chr9	+	977	7	FSM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	0	0	0	0	multi-exon	FALSE	canonical	3	2717	junction_1	326.320735201155	43606	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGTTGGAGAGGTGTTT	NA	False	NA	17	True	ATTAAA	-16	NA	78099228	78116631	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_78099347_78105551_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082_78115215_78116338
ENSMUST00000034904.14	chr9	+	2782	8	FSM	ENSMUSG00000032349.14	ENSMUST00000034904.14	2782	8	0	0	0	0	multi-exon	FALSE	canonical	3	515	junction_6	44.3764048354804	393	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCTTCTGTTGTTTG	NA	False	NA	11	True	ATTAAA	-19	NA	77824645	77891801	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946
ENSMUST00000034913.5	chr11	-	1205	5	FSM	ENSMUSG00000061111.9	ENSMUST00000034913.5	1205	5	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_4	30.2861354418156	720	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCCATGGCAGTCTGT	NA	False	NA	-24	True	AATAAA	-17	NA	120440553	120433713	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120434575_120434729_120434832_120435506_120435626_120435702_120435755_120440482
ENSMUST00000034928.12	chr9	-	1824	10	FSM	ENSMUSG00000032366.16	ENSMUST00000034928.12	1824	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	253.213616937299	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTGGTGGTCCTGTCGT	NA	False	NA	-3	True	AATAAA	-23	NA	66956491	66929874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66955405_66955532_66956300
ENSMUST00000034945.6	chr9	+	1240	5	FSM	ENSMUSG00000032381.6	ENSMUST00000034945.6	1240	5	0	0	0	0	multi-exon	FALSE	canonical	3	677	junction_3	21.6376408140999	2976	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGCTCACCTTAGGTTTT	1383	False	NA	17	True	AATAAA	-18	NA	66033892	66046237	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_66034253_66039808_66039974_66040713_66040764_66043583_66043630_66045618
ENSMUST00000034947.7	chr9	+	892	5	FSM	ENSMUSG00000032383.8	ENSMUST00000034947.7	892	5	0	0	0	0	multi-exon	FALSE	canonical	3	2090	junction_4	160.535626886994	17655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGGGTGTGGGCTGTGT	1574	False	NA	16	True	AATAAA	-16	NA	65967512	65973905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_65967683_65968748_65968863_65970270_65970365_65972768_65972954_65973576
ENSMUST00000034953.14	chr5	-	764	4	FSM	ENSMUSG00000059518.15	ENSMUST00000034953.14	764	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_3	111.749720357592	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGCTCATTCTGGG	NA	False	NA	2	True	AATAAA	-18	NA	137015683	137011047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_137011542_137011721_137011802_137013732_137013904_137015664
ENSMUST00000034964.7	chr9	+	1211	8	FSM	ENSMUSG00000032397.8	ENSMUST00000034964.7	1211	8	0	0	0	0	multi-exon	FALSE	canonical	3	540	junction_1	675.401679425976	10277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTCAGGATTTGAGTTT	9569	False	NA	14	True	AATAAA	-14	NA	64188888	64212074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUST00000034965.8	chr9	+	1228	3	FSM	ENSMUSG00000032398.8	ENSMUST00000034965.8	1228	3	0	0	0	0	multi-exon	FALSE	canonical	3	413	junction_2	26	4107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACTGCCAGCAACCTCT	1628	False	NA	NA	False	NA	NA	NA	64086555	64090414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_64086703_64087780_64087871_64089423
ENSMUST00000034966.9	chr9	+	1538	10	FSM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	0	0	0	0	multi-exon	FALSE	canonical	3	16882	junction_3	1427.06559842995	183120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTGCTTTGTTCCACATG	NA	False	NA	16	True	AATAAA	-13	NA	64080656	64085948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
ENSMUST00000034983.7	chr9	-	1994	7	FSM	ENSMUSG00000032412.9	ENSMUST00000034983.7	1994	7	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_2	81.5754592727222	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAACACATGATGGAGT	NA	False	NA	-10	True	AATAAA	-41	NA	96246495	96214707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_96215748_96217431_96217516_96220711_96220763_96222254_96222440_96225320_96225429_96227817_96227947_96246098
ENSMUST00000034986.14	chr9	-	1790	10	FSM	ENSMUSG00000032415.15	ENSMUST00000034986.14	1790	10	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_5	4.12160822022031	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTCTTTTGTTCTTTAT	NA	False	NA	0	True	ATTAAA	-26	NA	86347003	86189358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_86189930_86254393_86254533_86304893_86305058_86307314_86307424_86309420_86309491_86317336_86317407_86322638_86322808_86330815_86330907_86333866_86334064_86346793
ENSMUST00000034988.10	chr9	+	1355	3	FSM	ENSMUSG00000032417.11	ENSMUST00000034988.10	1355	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	22.5	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAACTTGTCTCAAGTCCAA	NA	False	NA	6	True	AATAAA	-19	NA	86454068	86456952	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_86454271_86454889_86455117_86456026
ENSMUST00000035007.10	chr9	+	3383	4	FSM	ENSMUSG00000032434.10	ENSMUST00000035007.10	3383	4	0	0	0	0	multi-exon	FALSE	canonical	3	606	junction_3	12.8322510366134	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTGTGCCTTCACAGTT	NA	False	NA	19	True	AATAAA	-15	NA	114560240	114578412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_114560442_114566250_114566428_114569126_114569226_114575506
ENSMUST00000035009.16	chr9	-	993	5	FSM	ENSMUSG00000032436.18	ENSMUST00000035009.16	993	5	0	0	0	0	multi-exon	FALSE	canonical	3	1122	junction_1	123.353911571543	5775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTCCTTATTGCATGAGA	NA	False	NA	-14	True	AATAAA	-16	NA	114610917	114585903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_114586360_114587872_114587955_114590974_114591074_114592286_114592461_114610735
ENSMUST00000035033.7	chr9	+	3050	22	FSM	ENSMUSG00000032458.7	ENSMUST00000035033.7	3050	22	0	0	0	0	multi-exon	TRUE	canonical	3	669	junction_10	53.4673910412871	850	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTTGAGTTTCCTTCCT	NA	False	NA	19	True	CATAAA	-20	NA	98445783	98470435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813_98469883_98470097
ENSMUST00000035034.10	chr9	-	1197	8	FSM	ENSMUSG00000032459.10	ENSMUST00000035034.10	1197	8	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_2	42.1929484387994	1628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTGTAATTCGTTTTT	NA	False	NA	-9	True	ATTAAA	-20	NA	98483713	98470782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_98470980_98472087_98472197_98474607_98474754_98476125_98476210_98476722_98476867_98478872_98479038_98480187_98480352_98483525
ENSMUST00000035038.8	chr9	+	1019	5	FSM	ENSMUSG00000032463.11	ENSMUST00000035038.8	1019	5	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_2	16.8430252627015	3323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTGGGTTTGGTTTCATG	3544	False	NA	9	True	AATAAA	-23	NA	98868425	98884074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_98868566_98874153_98874287_98874565_98874795_98881019_98881070_98883607
ENSMUST00000035053.12	chr9	+	1074	7	FSM	ENSMUSG00000032478.15	ENSMUST00000035053.12	1074	7	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	146.935359937627	2809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGTGCAAGCTTTCTCT	NA	False	NA	25	True	AATAAA	-32	NA	109661825	109672042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_109661876_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
ENSMUST00000035069.14	chr9	-	1223	5	FSM	ENSMUSG00000032491.15	ENSMUST00000035069.14	1223	5	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_3	3.96074487943871	892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGGCTCCTTGGACC	8924	False	NA	-5	True	ATTAAA	-25	NA	110453520	110450202	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_110450806_110450907_110451051_110451139_110451330_110452154_110452304_110453382
ENSMUST00000035075.13	chr9	-	1932	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	0	0	0	0	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	13178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	-15	True	AGTAAA	-21	NA	110775226	110768670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
ENSMUST00000035079.10	chr9	-	2754	19	FSM	ENSMUSG00000032498.10	ENSMUST00000035079.10	2754	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	91.190277259512	979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTTTTTTTTTTTATA	NA	False	NA	-27	True	AATAAA	-15	NA	111100859	111057322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_111057695_111058907_111059022_111059310_111059404_111059968_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111081931_111082045_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097377_111100476
ENSMUST00000035101.9	chr9	-	2906	5	FSM	ENSMUSG00000032515.9	ENSMUST00000035101.9	2906	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	11.4972822875669	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCTTCTTGGTGAGG	NA	False	NA	2	True	AATAAA	-17	NA	119813509	119800228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067_119806312_119813471
ENSMUST00000035106.12	chr9	+	1791	7	FSM	ENSMUSG00000032519.12	ENSMUST00000035106.12	1791	7	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_3	17.3173002771474	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAGCACTCTGATTGACA	1760	False	NA	NA	False	ATTAAA	-16	NA	119939439	119953570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_119939639_119945567_119945690_119946518_119946604_119949322_119949503_119949738_119949914_119951159_119951327_119952707
ENSMUST00000035113.11	chr9	+	577	3	FSM	ENSMUSG00000032526.12	ENSMUST00000035113.11	577	3	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_1	21	1745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTGTCCCATGTCAACT	NA	False	NA	11	True	AATAAA	-16	NA	121539394	121541987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_121539538_121539704_121539782_121541630
ENSMUST00000035166.12	chr9	-	2404	12	FSM	ENSMUSG00000032557.14	ENSMUST00000035166.12	2404	12	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_1	40.2171790110061	1076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGCTTTGAGATTCTAG	NA	False	NA	-13	True	AATAAA	-18	NA	103940333	103923797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
ENSMUST00000035194.8	chr9	-	2816	11	FSM	ENSMUSG00000032577.17	ENSMUST00000035194.8	2816	11	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_10	23.3752005338992	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCTGGGTTTCTTTATGT	NA	False	NA	-2	True	AATAAA	-24	NA	107167076	107132125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166723
ENSMUST00000035202.4	chr9	+	2042	6	FSM	ENSMUSG00000032583.8	ENSMUST00000035202.4	2042	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	6.62117814289874	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTTTGTCATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-22	NA	107765380	107780338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_107765602_107775870_107776011_107777225_107777715_107778393_107779160_107779814_107779963_107780060
ENSMUST00000035211.14	chr9	+	2262	18	FSM	ENSMUSG00000032591.16	ENSMUST00000035211.14	2262	18	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_13	9.09998288906715	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAGTGCTTCTTAGTTTC	6663	False	NA	18	True	CATAAA	-23	NA	107957634	107962202	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_107957730_107958343_107958492_107958583_107958697_107958782_107958898_107958981_107959119_107959199_107959321_107959401_107959521_107959663_107959860_107960018_107960150_107960227_107960331_107960452_107960590_107960677_107960714_107960792_107960902_107961062_107961141_107961259_107961407_107961486_107961594_107961691_107961832_107961972
ENSMUST00000035222.6	chr9	+	1783	9	FSM	ENSMUSG00000032602.7	ENSMUST00000035222.6	1783	9	0	0	0	0	multi-exon	FALSE	canonical	3	619	junction_8	102.171118717571	1521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATCGTGTGATATTTTCT	5077	False	NA	3	True	NA	NA	NA	108539296	108561840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108539532_108546964_108547058_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030
ENSMUST00000035227.8	chr9	+	2133	6	FSM	ENSMUSG00000032606.8	ENSMUST00000035227.8	2133	6	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_5	4.63033476111609	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTGTCAGCTGCTTGT	NA	False	NA	14	True	NA	NA	NA	108167627	108173697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108167862_108170534_108170712_108171129_108171244_108171644_108171717_108172087_108172193_108172266
ENSMUST00000035230.7	chr9	+	2082	9	FSM	ENSMUSG00000032607.13	ENSMUST00000035230.7	2082	9	0	0	0	0	multi-exon	TRUE	canonical	3	166	junction_5	15.4029218007494	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCTCTAGCTTCCTTG	NA	False	NA	21	True	AATAAA	-22	NA	108174068	108179501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
ENSMUST00000035234.6	chr9	+	1101	4	FSM	ENSMUSG00000032611.10	ENSMUST00000035234.6	1101	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	2.62466929133727	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGGGTTTATTACCTGGG	5955	False	NA	NA	False	AATAAA	-20	NA	108270032	108274969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108270059_108270433_108270839_108272492_108272585_108274391
ENSMUST00000035240.7	chr11	+	2260	3	FSM	ENSMUSG00000057219.12	ENSMUST00000035240.7	2260	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	2.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTGTGTGCTAGTCTCC	NA	False	NA	NA	False	ATTAAA	-22	NA	115366492	115381293	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_115366854_115366947_115367092_115379538
ENSMUST00000035276.5	chr7	-	676	3	FSM	ENSMUSG00000042462.5	ENSMUST00000035276.5	676	3	0	0	0	0	multi-exon	FALSE	canonical	3	3852	junction_1	65	28607	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCGATTTTTCTTGAGT	2490	False	NA	-1	True	AATAAA	-18	NA	126859881	126856130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126856509_126858529_126858641_126859694
ENSMUST00000035283.11	chr11	-	2450	17	FSM	ENSMUSG00000040667.12	ENSMUST00000035283.11	2450	17	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	230.176562664403	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTTGACTTTGCTTTA	NA	False	NA	-9	True	AATAAA	-39	NA	70860788	70833907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835407_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
ENSMUST00000035295.6	chr1	-	2048	3	FSM	ENSMUSG00000038633.6	ENSMUST00000035295.6	2048	3	0	0	0	0	multi-exon	FALSE	canonical	3	1138	junction_1	20.5	3052	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAGTGTCACTGGAGAA	NA	False	NA	NA	False	AATAAA	-16	NA	182110369	182103336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_182104459_182106540_182107284_182110186
ENSMUST00000035301.7	chr4	+	1135	3	FSM	ENSMUSG00000039105.7	ENSMUST00000035301.7	1135	3	0	0	0	0	multi-exon	FALSE	canonical	3	4249	junction_2	22.5	37296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGAGCAGAATTTCATCT	NA	False	NA	NA	False	AATACA	-20	NA	63463008	63468987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_63463237_63466821_63466923_63468181
ENSMUST00000035395.14	chr7	+	836	6	FSM	ENSMUSG00000030649.19	ENSMUST00000035395.14	836	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	222.801615793064	1031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAATGTCTATTCCCTGTT	7749	False	NA	21	True	AATAAA	-21	NA	101545546	101548747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_101545658_101546939_101546995_101547153_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUST00000035426.7	chr16	+	1611	2	FSM	ENSMUSG00000079737.5	ENSMUST00000035426.7	1611	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGTACTTTGGTATCT	NA	False	NA	NA	False	ATTAAA	-32	NA	13489883	13496249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_13489943_13494697
ENSMUST00000035481.5	chr2	+	1325	4	FSM	ENSMUSG00000037938.5	ENSMUST00000035481.5	1325	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_1	75.455652906562	4980	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCTAGGTTTGTGTGTT	3825	False	NA	45	True	NA	NA	NA	128971619	128976054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_128971778_128972097_128972239_128972320_128972487_128975194
ENSMUST00000035493.14	chr6	+	2147	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	0	0	0	0	multi-exon	FALSE	canonical	3	2150	junction_1	1335.10981654028	8871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	3734	False	NA	NA	False	AATAAA	-14	NA	117883755	117902580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
ENSMUST00000035622.8	chr7	+	2285	18	FSM	ENSMUSG00000039099.8	ENSMUST00000035622.8	2285	18	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	4.18019717751526	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGTGCGGTTCATCCTT	585	False	NA	1	True	AATAAA	-16	NA	79392910	79435698	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_79392932_79398829_79399168_79399712_79399906_79402195_79402261_79405680_79405760_79408157_79408274_79411207_79411247_79416137_79416174_79418106_79418192_79419088_79419261_79420725_79420797_79421264_79421352_79422148_79422269_79423100_79423315_79425259_79425324_79426377_79426535_79426860_79427054_79435463
ENSMUST00000035657.9	chr12	+	1747	10	FSM	ENSMUSG00000036613.9	ENSMUST00000035657.9	1747	10	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	106.926188918072	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGGCTCTTTGTTTGTTTT	1150	False	NA	7	True	NA	NA	NA	28801853	28917490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_28802004_28810068_28810153_28816770_28816904_28843853_28843936_28878706_28878864_28897555_28897656_28909250_28909388_28912953_28913122_28914668_28914834_28916919
ENSMUST00000035673.8	chr6	+	2792	3	FSM	ENSMUSG00000033933.14	ENSMUST00000035673.8	2792	3	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_1	12	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGTGTTGTGTTACCT	158	False	NA	19	True	AATAAA	-19	NA	113600919	113608594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_113601340_113605052_113605176_113606345
ENSMUST00000035721.14	chr2	-	3522	10	FSM	ENSMUSG00000039449.15	ENSMUST00000035721.14	3522	10	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	16.2305914484172	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGTGCTGCTTGATTCA	NA	False	NA	98	True	AGTAAA	-23	NA	4656897	4626868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_4629338_4638243_4638400_4640441_4640514_4640638_4640780_4641958_4642028_4643659_4643807_4648461_4648576_4650379_4650485_4653051_4653130_4656726
ENSMUST00000035725.7	chr6	+	1095	3	FSM	ENSMUSG00000033940.9	ENSMUST00000035725.7	1095	3	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_2	10.5	3429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATGTTTATGATCTGTT	NA	False	NA	11	True	AATAAA	-21	NA	113581732	113593912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_113581858_113592736_113592820_113593025
ENSMUST00000035735.11	chr10	+	934	4	FSM	ENSMUSG00000040280.11	ENSMUST00000035735.11	934	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	3.29983164553722	567	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTGCGCCTGCTAATCA	NA	False	NA	NA	False	AATACA	-21	NA	127350835	127353023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127350908_127351267_127351357_127352133_127352195_127352311
ENSMUST00000035748.14	chrX	+	2303	6	FSM	ENSMUSG00000033460.15	ENSMUST00000035748.14	2303	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	61.3286230075321	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618737	133622666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619742_133620375_133620475_133620782
ENSMUST00000035771.5	chr7	-	1309	7	FSM	ENSMUSG00000042502.11	ENSMUST00000035771.5	1309	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_6	224.819680830858	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCCTTTTGGCTTCAC	5583	False	NA	-4	True	AATAAA	-40	NA	126795047	126792829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794640_126794958
ENSMUST00000035775.9	chr10	-	468	4	FSM	ENSMUSG00000035215.10	ENSMUST00000035775.9	468	4	0	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_3	751.769616009822	35574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCCTGCTCTGTAACTTT	NA	False	NA	-13	True	AATAAA	-25	NA	80691043	80688658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80688935_80689591_80689664_80690451_80690543_80691014
ENSMUST00000035776.10	chr3	+	2429	7	FSM	ENSMUSG00000039756.13	ENSMUST00000035776.10	2429	7	0	0	0	0	multi-exon	FALSE	canonical	3	1082	junction_6	112.264073604258	4032	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGCCTCTTGGAATAA	NA	False	NA	23	True	AATAAA	-19	NA	122068036	122078920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_122068128_122068846_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
ENSMUST00000035780.4	chr4	+	1915	9	FSM	ENSMUSG00000035069.4	ENSMUST00000035780.4	1915	9	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	14.2560294261761	346	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGCCTTAGTTTGTAG	42	False	NA	16	True	AATAAA	-28	NA	103171008	103223640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_103171081_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
ENSMUST00000035785.9	chr3	+	1189	5	FSM	ENSMUSG00000041355.14	ENSMUST00000035785.9	1189	5	0	0	0	0	multi-exon	FALSE	canonical	3	4285	junction_2	286.022180083993	9396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	3620	False	NA	15	True	AATAAA	-17	NA	88486977	88495726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ENSMUST00000035804.9	chr18	-	1595	5	FSM	ENSMUSG00000033022.9	ENSMUST00000035804.9	1595	5	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	18.3166590840142	2050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGATGCACATGTTTTT	2577	False	NA	8	True	AATAAA	-30	NA	46861462	46846259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_46847029_46848663_46848834_46853353_46853509_46856384_46856463_46861039
ENSMUST00000035844.11	chr7	+	930	5	FSM	ENSMUSG00000038695.14	ENSMUST00000035844.11	930	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	25.2326673183792	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGCCTGGGCTCAGCTC	4742	False	NA	24	True	AATAAA	-16	NA	44117403	44121076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44117615_44118233_44118394_44119835_44119962_44120536_44120732_44120838
ENSMUST00000035852.14	chr5	+	2222	17	FSM	ENSMUSG00000037108.14	ENSMUST00000035852.14	2222	17	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	16.2498798072478	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGCTTTGTGTGTGTGT	7077	False	NA	32	True	AATAAA	-25	NA	137786059	137820883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_137786208_137793752_137793808_137794833_137795079_137796159_137796236_137797769_137797864_137798247_137798406_137799235_137799359_137808277_137808395_137809074_137809196_137809836_137809913_137810263_137810363_137815154_137815239_137815719_137815787_137816059_137816155_137817225_137817287_137817703_137817839_137820415
ENSMUST00000035925.7	chr8	-	1246	5	FSM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	2.91547594742265	722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCCTGGTGGTTTTTCTG	NA	False	NA	-6	True	NA	NA	NA	106937565	106927348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_106927782_106928862_106928984_106930962_106931173_106936996_106937264_106937350
ENSMUST00000035973.5	chrX	-	2996	7	FSM	ENSMUSG00000036782.14	ENSMUST00000035973.5	2996	7	0	0	0	0	multi-exon	FALSE	canonical	3	772	junction_6	147.505272975428	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	-23	True	AATAAA	-14	NA	23181418	23085524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368
ENSMUST00000036004.16	chr15	+	1918	11	FSM	ENSMUSG00000046434.17	ENSMUST00000036004.16	1918	11	0	0	0	0	multi-exon	FALSE	canonical	3	2223	junction_7	4396.07925429012	14932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	False	NA	-1	True	AATAAA	-17	NA	103148858	103153382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103152682
ENSMUST00000036023.3	chr3	-	593	2	FSM	ENSMUSG00000037910.3	ENSMUST00000036023.3	593	2	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	0	899	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAGTTTAGATGTGTCT	NA	False	NA	0	True	AATAAA	-42	NA	48563537	48560166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_48560355_48563132
ENSMUST00000036041.15	chr14	-	2673	22	FSM	ENSMUSG00000040701.17	ENSMUST00000036041.15	2673	22	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_4	12.8308372870802	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTAGCTGTGAAGTGGC	NA	False	NA	-22	True	AATAAA	-16	NA	55344050	55336306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338633_55338851_55338980_55339054_55339145_55339767_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342038_55342116_55342287_55342385_55342484_55342627_55342762_55342888_55343381_55343587_55343964
ENSMUST00000036125.10	chr5	-	2367	6	FSM	ENSMUSG00000040731.14	ENSMUST00000036125.10	2367	6	0	0	0	0	multi-exon	FALSE	canonical	3	1750	junction_2	182.920310517996	2701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTATGCTTGTCTTTCTGG	10021	False	NA	-4	True	AATAAA	-18	NA	134668201	134648730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_134650503_134650802_134650941_134654219_134654317_134654394_134654460_134656441_134656630_134668094
ENSMUST00000036126.7	chr14	+	1894	16	FSM	ENSMUSG00000036023.7	ENSMUST00000036126.7	1894	16	0	0	0	0	multi-exon	FALSE	canonical	3	692	junction_5	52.2695577431708	1747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGCTTCTTTGGGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	51045297	51058758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052424_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
ENSMUST00000036158.7	chr18	+	2462	3	FSM	ENSMUSG00000033272.13	ENSMUST00000036158.7	2462	3	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_1	96	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTACAGTTGTCCTGTCTTC	NA	False	NA	16	True	AATAAA	-34	NA	36812644	36816911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_36812677_36813568_36813668_36814580
ENSMUST00000036210.7	chr16	-	2758	11	FSM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	0	0	0	0	multi-exon	FALSE	canonical	3	749	junction_10	82.4351866620074	1202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTGGCTCCTCATTTACT	6230	False	NA	-1	True	NA	NA	NA	38370620	38345498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
ENSMUST00000036225.15	chr6	+	1896	14	FSM	ENSMUSG00000038388.15	ENSMUST00000036225.15	1896	14	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	465.128931670481	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCTGCGCATCAAGGCAT	NA	False	NA	NA	False	NA	NA	NA	50087362	50175404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_50087435_50120698_50120765_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50153856_50153899_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
ENSMUST00000036320.12	chr11	+	1790	9	FSM	ENSMUSG00000034175.14	ENSMUST00000036320.12	1790	9	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	83.1500901983876	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5049438	5056091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055180_5055314_5055432_5055718_5055799
ENSMUST00000036354.7	chrX	-	2563	2	FSM	ENSMUSG00000034403.17	ENSMUST00000036354.7	2563	2	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	0	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAATGGCATCATTTGG	NA	False	NA	-4	True	ATTAAA	-22	NA	98514298	98509719	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_98512207_98514222
ENSMUST00000036360.13	chr3	-	752	6	FSM	ENSMUSG00000038543.14	ENSMUST00000036360.13	752	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	8.93532316147547	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTTTGCCTACTTCTTA	NA	False	NA	NA	False	NA	NA	NA	95799267	95791269	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95791550_95792281_95792381_95795452_95795609_95796168_95796228_95797034_95797122_95799196
ENSMUST00000036376.13	chr11	+	1939	4	FSM	ENSMUSG00000034757.16	ENSMUST00000036376.13	1939	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	22.5437845585479	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTCTTTGTGACTGC	NA	False	NA	16	True	AATAAA	-18	NA	102175756	102180063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_102175915_102176489_102176545_102178133_102178698_102178901
ENSMUST00000036380.14	chr4	-	1000	8	FSM	ENSMUSG00000033379.14	ENSMUST00000036380.14	1000	8	0	0	0	0	multi-exon	FALSE	canonical	3	2123	junction_7	187.196393650942	10673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGCTTCTGTTGGCCCC	NA	False	NA	-1	True	AATAAA	-21	NA	117744526	117741522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744366
ENSMUST00000036381.10	chr14	-	2649	10	FSM	ENSMUSG00000034190.10	ENSMUST00000036381.10	2649	10	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_7	17.0583602471336	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGTTGTTGTCTATTC	NA	False	NA	-2	True	ATTAAA	-15	NA	69969983	69954448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_69955750_69955963_69956147_69956577_69956639_69956847_69956947_69957196_69957317_69957560_69957610_69958376_69958511_69958655_69958842_69967571_69967744_69969639
ENSMUST00000036418.10	chr3	-	1398	6	FSM	ENSMUSG00000038550.11	ENSMUST00000036418.10	1398	6	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_5	32.3604697122894	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAATGCTTTTTTTTTTTT	NA	False	NA	-3	True	ATTAAA	-13	NA	95789543	95785816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788902_95789466
ENSMUST00000036470.14	chr2	-	1870	4	FSM	ENSMUSG00000039983.14	ENSMUST00000036470.14	1870	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	9.0921211313239	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAAAAGATTTTCT	NA	False	NA	NA	False	NA	NA	NA	118859874	118848259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_118849646_118852549_118852707_118857618_118857869_118859797
ENSMUST00000036473.16	chr2	+	2918	20	FSM	ENSMUSG00000039254.17	ENSMUST00000036473.16	2918	20	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_15	17.3977423950124	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTATGTTATTTATTGA	NA	False	NA	17	True	AATAAA	-18	NA	32126601	32145017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_32126754_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630_32133725_32134245_32134402_32135558_32135690_32136026_32136123_32137548_32137642_32138626_32138724_32140481_32140575_32140800_32140922_32141273_32141372_32141921_32142036_32142887_32143015_32143727_32143906_32144284
ENSMUST00000036509.14	chr2	-	1852	10	FSM	ENSMUSG00000036352.17	ENSMUST00000036509.14	1852	10	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_2	68.2632884002073	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGTGTTACTTCATGGC	NA	False	NA	-3	True	AATAAA	-20	NA	25911759	25888554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25889080_25895337_25895477_25896538_25896626_25897730_25897966_25898872_25898982_25899172_25899276_25900533_25900642_25904903_25904978_25906307_25906429_25911408
ENSMUST00000036561.8	chr9	+	3845	19	FSM	ENSMUSG00000032512.8	ENSMUST00000036561.8	3845	19	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_17	23.7904950415284	1102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGTGTGCTGGACATGT	NA	False	NA	29	True	AATAAA	-17	NA	119723943	119755652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774
ENSMUST00000036572.4	chr4	-	1875	3	FSM	ENSMUSG00000040616.4	ENSMUST00000036572.4	1875	3	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_2	4	964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGACCTCATTCAGTCA	9800	False	NA	-6	True	AATAAA	-18	NA	141811615	141758302	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_141759406_141764715_141765245_141811372
ENSMUST00000036576.10	chr10	+	2455	16	FSM	ENSMUSG00000038010.10	ENSMUST00000036576.10	2455	16	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_12	10.0598210719674	231	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTAGAGTCCCTTCTTT	943	False	NA	NA	False	AATAAA	-24	NA	58333769	58412066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_58333885_58334990_58335036_58335183_58335242_58343342_58343464_58345326_58345455_58348900_58349080_58359959_58360119_58363163_58363284_58364144_58364223_58364726_58364835_58374070_58374233_58376619_58376737_58380738_58380932_58397722_58397900_58409410_58409550_58411510
ENSMUST00000036649.8	chr11	+	2607	7	FSM	ENSMUSG00000033983.15	ENSMUST00000036649.8	2607	7	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_2	22.1616535684702	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	NA	False	NA	15	True	AATAAA	-17	NA	88864760	88882439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
ENSMUST00000036665.10	chr3	-	3182	19	FSM	ENSMUSG00000027742.14	ENSMUST00000036665.10	3182	19	0	0	0	0	multi-exon	TRUE	canonical	3	106	junction_7	14.5610676585896	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATACATGTCATGTGTGC	NA	False	NA	NA	False	ATTAAA	-20	NA	52924658	52889295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_52890613_52893821_52893902_52896530_52896585_52897379_52897488_52900175_52900344_52900860_52900993_52903428_52903547_52905677_52905770_52907901_52907967_52909666_52909759_52909833_52909963_52914666_52914761_52916473_52916545_52916893_52916977_52917996_52918109_52920326_52920386_52921235_52921308_52922889_52923034_52924466
ENSMUST00000036680.8	chr4	-	1124	4	FSM	ENSMUSG00000039759.11	ENSMUST00000036680.8	1124	4	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	10.8730042868667	1231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGGCTGTCACTCGGTT	NA	False	NA	-3	True	AATAAA	-16	NA	152073454	152067095	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_152067810_152068091_152068194_152070125_152070319_152073339
ENSMUST00000036701.8	chr4	-	1366	8	FSM	ENSMUSG00000051435.12	ENSMUST00000036701.8	1366	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	3.33197251134017	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTTCATTGCTTC	3716	False	NA	NA	False	AGTAAA	-29	NA	141660400	141643599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_141643864_141645584_141645692_141646058_141646144_141648047_141648274_141649554_141649729_141655690_141655796_141656840_141656949_141660103
ENSMUST00000036720.9	chr17	+	1270	2	FSM	ENSMUSG00000033739.9	ENSMUST00000036720.9	1270	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTGTGGTCTGTGTTGTG	7359	False	NA	4	True	ATTAAA	-17	NA	34863737	34865298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34863928_34864218
ENSMUST00000036744.8	chr19	+	1783	4	FSM	ENSMUSG00000033760.18	ENSMUST00000036744.8	1783	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	20.1163283594862	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCTTAACTGAGTGGC	NA	False	NA	NA	False	AATAAA	-17	NA	4806598	4815968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4806690_4807273_4807698_4812004_4812676_4815371
ENSMUST00000036759.11	chr6	+	4307	31	FSM	ENSMUSG00000024104.12	ENSMUST00000036759.11	4307	31	0	0	0	0	multi-exon	TRUE	canonical	3	196	junction_27	51.0355975983648	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAGTGCATGGAAGCT	NA	False	NA	31	True	AATAAA	-34	NA	116184998	116239647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233187_116233251_116233576_116233790_116235602_116236218_116237451_116237630_116239295
ENSMUST00000036805.7	chr10	-	1260	6	FSM	ENSMUSG00000035278.10	ENSMUST00000036805.7	1260	6	0	0	0	0	multi-exon	FALSE	canonical	3	943	junction_2	140.821021158064	5143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634460	80631932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633743_80633812_80633914
ENSMUST00000036807.13	chr8	+	2295	3	FSM	ENSMUSG00000037214.13	ENSMUST00000036807.13	2295	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	13	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGGCCCTGCTTTTTT	NA	False	NA	7	True	ATTAAA	-18	NA	26648168	26654179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_26648550_26650802_26650999_26652461
ENSMUST00000036825.14	chr13	-	1351	6	FSM	ENSMUSG00000034891.14	ENSMUST00000036825.14	1351	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	35.7636687156114	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCGCCGCCTAGGCAGG	NA	False	NA	-1	True	AATAAA	-16	NA	54914408	54906672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_54907355_54907680_54907771_54910455_54910575_54910734_54910774_54913375_54913506_54914117
ENSMUST00000036880.8	chr8	+	1642	13	FSM	ENSMUSG00000033862.8	ENSMUST00000036880.8	1642	13	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_10	22.2279853638006	1427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	2125	False	NA	10	True	GATAAA	-11	NA	123951580	123958989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_123951708_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
ENSMUST00000036928.12	chr1	-	1741	9	FSM	ENSMUSG00000038776.14	ENSMUST00000036928.12	1741	9	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	19.7214984217731	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGGGCCAGATACCTT	5728	False	NA	-3	True	GATAAA	-18	NA	180845134	180817118	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_180817546_180817957_180818084_180819497_180819607_180821443_180821653_180822192_180822323_180823513_180823742_180827287_180827469_180829363_180829552_180844991
ENSMUST00000036951.13	chr5	-	1240	4	FSM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1275.14783456664	34104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTGCGGGTATTTCCTT	NA	False	NA	-17	True	AATAAA	-15	NA	117425690	117420718	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_117421531_117423785_117423887_117424199_117424310_117425473
ENSMUST00000036952.5	chr11	+	2467	3	FSM	ENSMUSG00000036275.14	ENSMUST00000036952.5	2467	3	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	2	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATCTGCTTCTGTTAGT	4558	False	NA	NA	False	AATAAA	-11	NA	52287254	52299550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_52287431_52293872_52294385_52297771
ENSMUST00000036991.5	chr5	-	1816	3	FSM	ENSMUSG00000041548.5	ENSMUST00000036991.5	1816	3	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_2	24.5	2835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGCTTCATTTAGCGA	NA	False	NA	0	True	AATAAA	-20	NA	116560923	116546549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_116547550_116553465_116553530_116560171
ENSMUST00000036996.6	chr8	+	623	3	FSM	ENSMUSG00000033938.6	ENSMUST00000036996.6	623	3	0	0	0	0	multi-exon	FALSE	canonical	3	2087	junction_2	87.5	18485	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATCTGTGCTACTTCAA	NA	False	NA	23	True	AATAAA	-23	NA	84293299	84298255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_84293560_84297458_84297628_84298061
ENSMUST00000037001.10	chr15	+	2502	9	FSM	ENSMUSG00000037353.10	ENSMUST00000037001.10	2502	9	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	24.1761116600664	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGGGAATTACTTATG	2335	False	NA	27	True	AGTAAA	-16	NA	100366903	100377045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_100367127_100367565_100367718_100369540_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
ENSMUST00000037014.11	chr12	+	1960	5	FSM	ENSMUSG00000037594.12	ENSMUST00000037014.11	1960	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	3.74165738677394	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTTGTTGACTCATT	3901	False	NA	17	True	ATTAAA	-19	NA	112772556	112779872	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_112773429_112774493_112774631_112775802_112775933_112778082_112778200_112779168
ENSMUST00000037023.9	chr12	-	390	3	FSM	ENSMUSG00000034892.9	ENSMUST00000037023.9	390	3	0	0	0	0	multi-exon	FALSE	canonical	3	25458	junction_2	210	303008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGTGTGTTTTGT	NA	False	NA	-10	True	AATAAA	-18	NA	69205960	69204495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_69204596_69205434_69205535_69205770
ENSMUST00000037056.9	chr5	-	540	5	FSM	ENSMUSG00000038690.16	ENSMUST00000037056.9	540	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	2948.80004196622	32766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATACTGCTTGCCTGGTGT	9969	False	NA	-13	True	AATAAA	-14	NA	145128402	145120518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145125002_145125069_145128312
ENSMUST00000037099.9	chr4	-	4119	6	FSM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	0	0	0	0	multi-exon	FALSE	canonical	3	1299	junction_1	75.0269284990396	978	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCTTTTTTTTTTTTTT	NA	False	NA	0	True	AATAAA	-19	NA	135000125	134941279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134999828
ENSMUST00000037127.15	chr4	+	1719	9	FSM	ENSMUSG00000033423.17	ENSMUST00000037127.15	1719	9	0	0	0	0	multi-exon	TRUE	canonical	3	273	junction_1	182.065535934179	1645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCTTGTGTCTAAGGC	NA	False	NA	25	True	AATAAA	-32	NA	117407561	117531494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_117407928_117410164_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ENSMUST00000037190.15	chr8	+	1191	8	FSM	ENSMUSG00000038005.16	ENSMUST00000037190.15	1191	8	0	0	0	0	multi-exon	FALSE	canonical	3	724	junction_4	79.3373062516324	7990	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTAGTGTTTCTTTCA	NA	False	NA	22	True	AATAAA	-35	NA	61343484	61360614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_61343571_61346734_61346895_61348494_61348685_61349771_61349871_61353117_61353269_61357033_61357122_61358581_61358755_61360370
ENSMUST00000037205.11	chr7	+	828	3	FSM	ENSMUSG00000033429.11	ENSMUST00000037205.11	828	3	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_2	55.5	4807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTTGTTATTTGAATTT	NA	False	NA	25	True	ATTAAA	-26	NA	64042392	64061873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_64042592_64049916_64050255_64061582
ENSMUST00000037210.9	chr2	+	1321	10	FSM	ENSMUSG00000041921.17	ENSMUST00000037210.9	1321	10	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_6	11.0565326201412	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTATTGTGTCCAGTCT	NA	False	NA	NA	False	NA	NA	NA	71283619	71355535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_71283743_71337128_71337287_71340084_71340235_71341755_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
ENSMUST00000037246.7	chr19	-	1067	8	FSM	ENSMUSG00000034108.7	ENSMUST00000037246.7	1067	8	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_5	30.737864703499	5505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889360	4875393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884200_4884339_4888858_4888932_4889224
ENSMUST00000037248.10	chr7	+	2766	7	FSM	ENSMUSG00000042606.10	ENSMUST00000037248.10	2766	7	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_2	39.0498257216199	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACACTCTCAGGCTCAGT	1476	False	NA	8	True	NA	NA	NA	126461143	126464549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126461689_126461771_126461893_126461989_126462099_126462340_126463423_126463491_126463658_126463734_126463834_126463905
ENSMUST00000037260.8	chr15	+	2486	2	FSM	ENSMUSG00000050846.10	ENSMUST00000037260.8	2486	2	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	0	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCTGTGTAATTGGCATA	NA	False	NA	10	True	AATAAA	-16	NA	75812800	75821249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_75813009_75818971
ENSMUST00000037290.12	chr10	-	2939	21	FSM	ENSMUSG00000040354.15	ENSMUST00000037290.12	2939	21	0	0	0	0	multi-exon	FALSE	canonical	3	1393	junction_15	206.401332360041	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCTCCTGGTCTACCCT	NA	False	NA	-6	True	AATAAA	-27	NA	127147655	127132089	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
ENSMUST00000037324.12	chr11	+	1440	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	0	0	0	0	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	32829	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTGTTTCTTAATGAA	411	False	NA	34	True	AATAAA	-41	NA	52122835	52137685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
ENSMUST00000037333.17	chr17	+	1999	7	FSM	ENSMUSG00000034165.17	ENSMUST00000037333.17	1999	7	0	0	0	0	multi-exon	FALSE	canonical	2	40	junction_1	1813.81013951908	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTCTTGTGATCCCTGGG	NA	False	NA	NA	False	AATAAA	-17	NA	47816052	47910616	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_47816192_47889633_47889699_47904578_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ENSMUST00000037349.8	chrX	-	2237	16	FSM	ENSMUSG00000036932.15	ENSMUST00000037349.8	2237	16	0	0	0	0	multi-exon	FALSE	canonical	3	1039	junction_9	82.1482129378898	2239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602440	47563820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
ENSMUST00000037360.8	chr2	-	1703	3	FSM	ENSMUSG00000034226.8	ENSMUST00000037360.8	1703	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTGGTCTCCT	NA	False	NA	-5	True	AATAAA	-17	NA	119101753	119099681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_119100969_119101162_119101222_119101396
ENSMUST00000037361.9	chr1	+	1620	4	FSM	ENSMUSG00000038793.9	ENSMUST00000037361.9	1620	4	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	33.0790299468141	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTTTGTTTCCTTATT	NA	False	NA	8	True	AATAAA	-17	NA	180762586	180765965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180762925_180764111_180764359_180764573_180764820_180765176
ENSMUST00000037376.14	chr6	+	1405	10	FSM	ENSMUSG00000034744.14	ENSMUST00000037376.14	1405	10	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	21.8281729836116	1167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTGTCATCTTCCATA	9258	False	NA	13	True	AATAAA	-21	NA	83771963	83779538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83772265_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
ENSMUST00000037383.13	chr12	+	2737	7	FSM	ENSMUSG00000037669.16	ENSMUST00000037383.13	2737	7	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_1	76.8839312788367	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTGTGGTCTGATC	NA	False	NA	18	True	AATAAA	-18	NA	8258106	8335759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_8258193_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8333899
ENSMUST00000037399.16	chr7	+	1028	5	FSM	ENSMUSG00000040466.17	ENSMUST00000037399.16	1028	5	0	0	0	0	multi-exon	FALSE	canonical	2	274	junction_1	67.0834368529222	5190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATTGATTGATTGATTG	NA	False	NA	NA	False	TTTAAA	-18	NA	27147402	27165569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27147622_27158680_27158846_27158987_27159078_27161991_27162121_27165144
ENSMUST00000037499.6	chr2	+	955	7	FSM	ENSMUSG00000042670.6	ENSMUST00000037499.6	955	7	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_1	38.970073988468	5677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGACTATCTCATATTTG	NA	False	NA	NA	False	TATAAA	-22	NA	105734982	105795903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_105735076_105738668_105738775_105761063_105761198_105763609_105763699_105767336_105767464_105794524_105794636_105795608
ENSMUST00000037534.8	chr11	+	1833	9	FSM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_5	18.8244355825082	1623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9190	False	NA	30	True	AATAAA	-31	NA	70538112	70542247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
ENSMUST00000037565.14	chr4	-	2558	5	FSM	ENSMUSG00000066000.13	ENSMUST00000037565.14	2558	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	194.56666595283	893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTGACTTGCTTGTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	147726965	147696395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
ENSMUST00000037726.14	chr14	-	3416	18	FSM	ENSMUSG00000041594.19	ENSMUST00000037726.14	3416	18	0	0	0	0	multi-exon	TRUE	canonical	3	136	junction_13	13.8696352514015	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGGTTTCTTTTTAG	NA	False	NA	4	True	AGTAAA	-26	NA	123220695	123156382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215485_123215699_123220583
ENSMUST00000037739.8	chr14	-	1947	15	FSM	ENSMUSG00000042354.8	ENSMUST00000037739.8	1947	15	0	0	0	0	multi-exon	FALSE	canonical	3	775	junction_10	82.9678140200482	5931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30741109	30734389	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
ENSMUST00000037783.7	chr6	+	1752	11	FSM	ENSMUSG00000034083.17	ENSMUST00000037783.7	1752	11	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_7	17.7876361554873	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGAGGAACTTGTTTCTT	NA	False	NA	12	True	TATAAA	-16	NA	91855033	91876824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_91855168_91857237_91857343_91858227_91858329_91862328_91862388_91865050_91865232_91867774_91867871_91869836_91869980_91870386_91870482_91872194_91872328_91875127_91875281_91876272
ENSMUST00000037796.14	chr1	+	1539	13	FSM	ENSMUSG00000033021.17	ENSMUST00000037796.14	1539	13	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	48.5514475124641	546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGCTTGGACTCCTACT	NA	False	NA	13	True	AATAAA	-17	NA	75412573	75419818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_75412656_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ENSMUST00000037807.3	chr6	+	1242	3	FSM	ENSMUSG00000034777.3	ENSMUST00000037807.3	1242	3	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	5	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTCTGTCCCTGTTCT	NA	False	NA	21	True	AATAAA	-32	NA	83688245	83715295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83688526_83710080_83710269_83714521
ENSMUST00000037836.12	chr6	+	687	5	FSM	ENSMUSG00000040242.15	ENSMUST00000037836.12	687	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	196.103289110611	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGTGTGCTTTTCATGGC	NA	False	NA	NA	False	AATAAA	-16	NA	146478700	146494363	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_146478758_146487179_146487317_146490237_146490356_146491391_146491535_146494131
ENSMUST00000037839.12	chr3	-	1610	8	FSM	ENSMUSG00000039795.15	ENSMUST00000037839.12	1610	8	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	173.164190104923	1947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTGCATTTGATCTATAA	NA	False	NA	-1	True	AATAAA	-45	NA	10416377	10405012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10413613_10416301
ENSMUST00000037843.7	chr16	-	1851	3	FSM	ENSMUSG00000039568.7	ENSMUST00000037843.7	1851	3	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_1	8.5	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTAGTCTTGCCTCAT	NA	False	NA	-1	True	NA	NA	NA	4698179	4692641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_4693734_4694225_4694286_4697480
ENSMUST00000037850.7	chr18	+	2067	15	FSM	ENSMUSG00000034484.9	ENSMUST00000037850.7	2067	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	254.699312515598	2266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTTAGGGATCTTTTTTT	NA	False	NA	38	True	AATAAA	-18	NA	53309387	53353937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_53309560_53322726_53322845_53327501_53327666_53330926_53330994_53331257_53331302_53332828_53332971_53336112_53336192_53342659_53342736_53343401_53343516_53343770_53343865_53345824_53346031_53349452_53349597_53351173_53351255_53351360_53351433_53353443
ENSMUST00000037928.9	chrX	-	1783	4	FSM	ENSMUSG00000040749.12	ENSMUST00000037928.9	1783	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	206.108385726216	1198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCAGGTTTTTCTCACTT	NA	False	NA	-18	True	AATAAA	-15	NA	162859117	162853700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859010
ENSMUST00000037941.10	chr7	+	1533	8	FSM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	0	0	0	0	multi-exon	FALSE	canonical	3	5787	junction_4	310.433666383802	3736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCAGACCTCTTCCTGT	NA	False	NA	42	True	AATAAA	-30	NA	142606475	142621671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
ENSMUST00000037967.6	chrX	-	2023	3	FSM	ENSMUSG00000032806.14	ENSMUST00000037967.6	2023	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	8.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCTCGGGTCCCTTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	73416955	73412822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_73414618_73416219_73416289_73416796
ENSMUST00000038039.3	chr13	+	1957	7	FSM	ENSMUSG00000035958.4	ENSMUST00000038039.3	1957	7	0	0	0	0	multi-exon	FALSE	canonical	3	768	junction_5	64.0791611125559	1065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGACTTTTTTCTTCATG	NA	False	NA	21	True	AATAAA	-21	NA	25015661	25026136	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_25015913_25015992_25016079_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
ENSMUST00000038069.9	chr7	+	1048	4	FSM	ENSMUSG00000054169.8	ENSMUST00000038069.9	1048	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	7.31816613336672	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGCTCCTTCGACTCTA	1107	False	NA	NA	False	AATAAA	-25	NA	24476630	24484081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_24476765_24477550_24477911_24480294_24480655_24483887
ENSMUST00000038075.12	chr14	-	1076	3	FSM	ENSMUSG00000041625.16	ENSMUST00000038075.12	1076	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	3	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTTGGTCCTTCTTTTG	NA	False	NA	-2	True	ATTAAA	-29	NA	123150574	123128271	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_123129229_123137887_123137945_123150512
ENSMUST00000038091.8	chr1	+	3213	7	FSM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_5	43.0761599444003	2836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTTGGAGTTTTTTGTT	NA	False	NA	22	True	AATAAA	-22	NA	180678691	180695678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180678858_180683367_180683486_180685687_180685800_180687465_180687636_180688662_180688784_180689922_180690407_180693636
ENSMUST00000038131.10	chr5	-	1317	9	FSM	ENSMUSG00000033970.16	ENSMUST00000038131.10	1317	9	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_1	24.5098832106561	2558	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAGTATTTTGCTTACA	NA	False	NA	60	True	TTTAAA	-40	NA	151574707	151566220	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_151566569_151567175_151567246_151568077_151568177_151568254_151568392_151568982_151569165_151570903_151571002_151571709_151571778_151573336_151573475_151574530
ENSMUST00000038154.12	chr3	-	1232	4	FSM	ENSMUSG00000037161.15	ENSMUST00000038154.12	1232	4	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_2	9.84321537348893	918	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTAGTCTTTCTTGTT	NA	False	NA	0	True	AATAAA	-17	NA	51303969	51295832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_51296745_51298646_51298741_51299245_51299350_51303847
ENSMUST00000038169.8	chr10	-	544	3	FSM	ENSMUSG00000033307.8	ENSMUST00000038169.8	544	3	0	0	0	0	multi-exon	FALSE	canonical	3	12818	junction_1	2119	38220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75696074	75695186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_75695378_75695520_75695694_75695894
ENSMUST00000038174.8	chr8	-	1356	9	FSM	ENSMUSG00000039720.8	ENSMUST00000038174.8	1356	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	19.421315609402	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27692575	27687486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399
ENSMUST00000038185.10	chr12	+	3310	9	FSM	ENSMUSG00000032705.10	ENSMUST00000038185.10	3310	9	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_6	24.0724816959116	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGTGATTGTAAATGTG	2663	False	NA	22	True	AATAAA	-19	NA	80509868	80544896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_80510055_80522496_80522963_80527228_80527486_80531019_80531147_80536175_80536508_80537554_80537662_80537868_80538005_80539315_80539673_80543554
ENSMUST00000038196.7	chr11	+	2499	18	FSM	ENSMUSG00000034121.13	ENSMUST00000038196.7	2499	18	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	22.9555008070187	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	6456	False	NA	18	True	TATAAA	-20	NA	87744040	87754629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_87744156_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
ENSMUST00000038217.14	chr10	-	1944	6	FSM	ENSMUSG00000040415.16	ENSMUST00000038217.14	1944	6	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	37.9705148766777	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031578	127026246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_127026909_127027204_127027423_127028477_127029227_127029598_127029673_127030278_127030504_127031562
ENSMUST00000038237.8	chr11	+	2235	20	FSM	ENSMUSG00000034274.12	ENSMUST00000038237.8	2235	20	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	27.0805712775824	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTGTTTGTAGCTCCTT	NA	False	NA	21	True	ATTAAA	-18	NA	4845342	4878865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_4845379_4849790_4849907_4851151_4851296_4852085_4852200_4852334_4852433_4854094_4854242_4855640_4855756_4860626_4860760_4862780_4862859_4864269_4864311_4864521_4864622_4865488_4865598_4868123_4868226_4869732_4869830_4870376_4870492_4871921_4872026_4872138_4872227_4874747_4874864_4876045_4876237_4878674
ENSMUST00000038244.15	chr17	+	1343	4	FSM	ENSMUSG00000034786.18	ENSMUST00000038244.15	1343	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	3.29983164553722	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGACTGGTATCTGGGG	NA	False	NA	5	True	AATAAA	-18	NA	34808779	34810728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34809235_34809434_34809538_34809715_34809916_34810143
ENSMUST00000038275.11	chr13	+	3065	7	FSM	ENSMUSG00000038175.11	ENSMUST00000038275.11	3065	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	5.98377435700541	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCCTTTGTGATCTTAT	4395	False	NA	NA	False	AATAAA	-15	NA	45543217	45565498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_45543520_45544664_45544856_45557875_45558062_45559368_45559567_45560032_45560198_45561831_45562253_45563896
ENSMUST00000038332.9	chr7	+	2475	3	FSM	ENSMUSG00000038888.9	ENSMUST00000038332.9	2475	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	1	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTTTTTGGTCTGGTGTT	NA	False	NA	8	True	NA	NA	NA	43321439	43327722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_43321500_43324527_43325071_43325850
ENSMUST00000038341.8	chr2	+	3668	23	FSM	ENSMUSG00000040084.10	ENSMUST00000038341.8	3668	23	0	0	0	0	multi-exon	TRUE	canonical	3	422	junction_10	74.3091181573454	385	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTTGCTGGCAATTCA	NA	False	NA	15	True	AATAAA	-16	NA	118428691	118472072	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118461425_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
ENSMUST00000038343.7	chr11	-	1722	11	FSM	ENSMUSG00000013418.9	ENSMUST00000038343.7	1722	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	6.67907179179862	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGGAGCTAGGGTAGGAC	2890	False	NA	NA	False	NA	NA	NA	95805717	95756768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_95757103_95757575_95757796_95759175_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
ENSMUST00000038368.9	chr2	+	934	2	FSM	ENSMUSG00000042745.10	ENSMUST00000038368.9	934	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	424	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGCTGTGACTTCTTGGA	4422	False	NA	13	True	ATTAAA	-17	NA	152578170	152579330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_152578666_152578891
ENSMUST00000038379.5	chr19	+	3500	10	FSM	ENSMUSG00000034820.5	ENSMUST00000038379.5	3500	10	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_5	38.5749230894635	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTTATACTGCATTGT	NA	False	NA	16	True	AATAAA	-16	NA	10502629	10525017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_10502692_10503315_10503425_10509144_10509364_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
ENSMUST00000038383.14	chr6	+	1371	10	FSM	ENSMUSG00000061758.14	ENSMUST00000038383.14	1371	10	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_8	4.10960933531265	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTTCAACTGTCAGAAT	3006	False	NA	4	True	AATAAA	-18	NA	34361152	34373885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_34361343_34364606_34364775_34365710_34365828_34366989_34367068_34368951_34369075_34369323_34369431_34369849_34369932_34370992_34371077_34371661_34371745_34373546
ENSMUST00000038406.7	chr6	+	1358	10	FSM	ENSMUSG00000029762.7	ENSMUST00000038406.7	1358	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	1.94999208608714	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGAAGTGATTTTTGAG	NA	False	NA	NA	False	AATAAA	-32	NA	34331053	34345398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_34331232_34333190_34333359_34334395_34334513_34335065_34335144_34340266_34340390_34340656_34340764_34341171_34341254_34342141_34342226_34342837_34342921_34345060
ENSMUST00000038411.5	chr10	+	1411	2	FSM	ENSMUSG00000113640.2	ENSMUST00000038411.5	1411	2	0	0	0	0	multi-exon	TRUE	canonical	3	56	junction_1	0	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCGTTTGCACTCAGGT	NA	False	NA	3	True	AATAAA	-15	NA	80438713	80443488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80438784_80442147
ENSMUST00000038434.4	chr4	-	856	2	FSM	ENSMUSG00000036114.4	ENSMUST00000038434.4	856	2	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	0	3988	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCTGTTGTGTAAG	9620	False	NA	-17	True	AATAAA	-14	NA	41713534	41712032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_41712815_41713460
ENSMUST00000038439.4	chr2	-	1008	11	FSM	ENSMUSG00000034278.4	ENSMUST00000038439.4	1008	11	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	69.3010822426317	1913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTACTTTTCTTCCTCTTG	NA	False	NA	-4	True	AATAAA	-15	NA	119039276	119002980	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_119003167_119009832_119009944_119010365_119010447_119010967_119011046_119011406_119011451_119014079_119014177_119014397_119014484_119016176_119016265_119016509_119016569_119016826_119016897_119039168
ENSMUST00000038474.14	chr2	+	1686	9	FSM	ENSMUSG00000039356.16	ENSMUST00000038474.14	1686	9	0	0	0	0	multi-exon	FALSE	canonical	3	842	junction_6	46.6797600679352	2429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGGAGTCTCACCGCGT	NA	False	NA	NA	False	AATAAA	-16	NA	31560726	31571361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31565917_31566679_31566749_31568462_31568640_31569862_31569992_31570501
ENSMUST00000038514.15	chr5	-	2352	12	FSM	ENSMUSG00000034826.15	ENSMUST00000038514.15	2352	12	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_1	63.2088235288462	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTCTGGTGTTTTATTT	NA	False	NA	0	True	AATAAA	-25	NA	92583078	92563398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481_92573670_92575958_92576186_92578659_92578813_92578897_92578982_92582862
ENSMUST00000038521.14	chr7	+	1365	5	FSM	ENSMUSG00000035585.17	ENSMUST00000038521.14	1365	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	497.531908524468	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2175	False	NA	6	True	AATAAA	-16	NA	3696763	3704011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698362_3698621_3703526
ENSMUST00000038539.8	chr14	+	1843	2	FSM	ENSMUSG00000040822.8	ENSMUST00000038539.8	1843	2	0	0	0	0	multi-exon	FALSE	canonical	3	385	junction_1	0	2530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTACTGGTGATTCACAT	NA	False	NA	NA	False	AATAAA	-26	NA	54923672	54928198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_54924578_54927260
ENSMUST00000038562.9	chr4	-	3092	3	FSM	ENSMUSG00000039911.14	ENSMUST00000038562.9	3092	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	6.5	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCGAGTCCTTTCGTGC	NA	False	NA	3	True	AATAAA	-24	NA	150039500	149980739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_149982799_149990872_149991715_150039309
ENSMUST00000038570.9	chr11	+	1926	10	FSM	ENSMUSG00000034285.16	ENSMUST00000038570.9	1926	10	0	0	0	0	multi-exon	FALSE	canonical	3	1103	junction_6	68.3294488507475	3967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTTGTGGTGTTGTCTTCA	NA	False	NA	11	True	ATTAAA	-11	NA	4823950	4844200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
ENSMUST00000038572.15	chr7	+	2142	13	FSM	ENSMUSG00000015165.17	ENSMUST00000038572.15	2142	13	0	0	0	0	multi-exon	FALSE	canonical	3	4757	junction_8	508.744178235868	6819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGGTGGGTTGTCTGCTTT	NA	False	NA	33	True	AATAAA	-36	NA	28510314	28521691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28510594_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28517958_28518068_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
ENSMUST00000038580.7	chr17	+	1438	8	FSM	ENSMUSG00000016206.7	ENSMUST00000038580.7	1438	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	3.09047252182628	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACCCCATGTGTTCAAT	NA	False	NA	NA	False	AATAAA	-13	NA	37581110	37585375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_37581226_37581412_37581683_37581888_37582165_37583159_37583436_37583538_37583644_37584609_37584643_37584756_37584804_37585059
ENSMUST00000038600.4	chr2	+	2080	4	FSM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	0	0	0	0	multi-exon	FALSE	canonical	3	508	junction_2	49.4592986426438	1255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCTCTAGAACTTTGAAC	NA	False	NA	28	True	NA	NA	NA	28358077	28361190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434
ENSMUST00000038626.10	chr8	-	980	5	FSM	ENSMUSG00000035559.10	ENSMUST00000038626.10	980	5	0	0	0	0	multi-exon	FALSE	canonical	3	649	junction_3	27.2304976083802	2272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGCGTGTGGGTGGGTT	NA	False	NA	-2	True	ATTAAA	-17	NA	71213592	71211294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71211671_71211754_71211884_71212036_71212114_71213013_71213185_71213365
ENSMUST00000038644.5	chr11	-	820	5	FSM	ENSMUSG00000032892.15	ENSMUST00000038644.5	820	5	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_2	47.2989164780759	11742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCCTTCAAATCTA	7236	False	NA	-2	True	AATAAA	-22	NA	68864669	68863309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_68863568_68863768_68863855_68863942_68864100_68864266_68864384_68864467
ENSMUST00000038673.14	chr9	+	411	4	FSM	ENSMUSG00000035048.14	ENSMUST00000038673.14	411	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	702.50282719874	1975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCCCACTTGGTTTTCGT	NA	False	NA	17	True	AATAAA	-17	NA	102503861	102511441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_102503887_102506745_102506777_102506961_102507088_102511212
ENSMUST00000038675.7	chr7	+	692	5	FSM	ENSMUSG00000037772.14	ENSMUST00000038675.7	692	5	0	0	0	0	multi-exon	FALSE	canonical	3	973	junction_1	229.96847610053	5915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGACACTTTGCCTT	NA	False	NA	2	True	AATAAA	-20	NA	142086748	142094484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_142086932_142088741_142088865_142089806_142089890_142091003_142091078_142094255
ENSMUST00000038709.14	chr11	-	2417	7	FSM	ENSMUSG00000039294.15	ENSMUST00000038709.14	2417	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	26.4790273403101	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTTTCTGTTTTCTGC	NA	False	NA	0	True	AATAAA	-22	NA	121120135	121113413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121119864
ENSMUST00000038739.5	chr8	-	4443	13	FSM	ENSMUSG00000033596.6	ENSMUST00000038739.5	4443	13	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_9	43.0880074833925	3298	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCAGTGTCTTCCGCCTG	5496	False	NA	-9	True	AATAAA	-17	NA	112026854	111997575	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_111999796_112000442_112000655_112002851_112003067_112004826_112005004_112006517_112006669_112009148_112009378_112009906_112010022_112014689_112014782_112014860_112015044_112017502_112017571_112020622_112020808_112023766_112024275_112026766
ENSMUST00000038743.15	chr7	-	2310	15	FSM	ENSMUSG00000019734.17	ENSMUST00000038743.15	2310	15	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_12	9.74077271376478	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCGTTTTGAAACCCCG	5398	False	NA	-12	True	AATAAA	-16	NA	3680552	3668788	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_3669008_3669100_3669180_3669817_3669974_3670046_3670178_3670439_3670624_3672572_3672671_3672913_3673041_3673936_3674101_3674272_3674441_3674961_3675110_3677585_3677708_3677848_3678082_3678424_3678571_3679562_3679768_3680422
ENSMUST00000038772.13	chr10	-	1546	7	FSM	ENSMUSG00000034620.18	ENSMUST00000038772.13	1546	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	137.068920214937	1328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTATTCATAAGTGTAA	NA	False	NA	-10	True	AATAAA	-19	NA	121933061	121917164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_121917595_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932000_121932252_121932367_121932804
ENSMUST00000038782.4	chr1	-	1546	12	FSM	ENSMUSG00000040629.9	ENSMUST00000038782.4	1546	12	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_10	4.55453638177285	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGCACTCTTGCTTGTT	NA	False	NA	-7	True	ATTAAA	-22	NA	166066313	166028953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_166029305_166029843_166029920_166032358_166032492_166033421_166033485_166053158_166053301_166053405_166053461_166054134_166054260_166061733_166061776_166062969_166063126_166064441_166064542_166065831_166065925_166066103
ENSMUST00000038791.15	chr7	-	1582	6	FSM	ENSMUSG00000033917.16	ENSMUST00000038791.15	1582	6	0	0	0	0	multi-exon	TRUE	canonical	3	428	junction_5	40.804901666344	923	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTACTGATCTTCTGGT	NA	False	NA	3	True	AATAAA	-28	NA	118305001	118287767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_118288374_118290805_118291018_118293715_118293809_118294258_118294365_118297777_118297954_118304612
ENSMUST00000038830.10	chr19	-	1614	4	FSM	ENSMUSG00000035171.10	ENSMUST00000038830.10	1614	4	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	6.94422221866655	1960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	453	False	NA	NA	False	AATAAA	-21	NA	21630340	21574675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_21575699_21576118_21576233_21596472_21596580_21629970
ENSMUST00000038868.14	chr4	+	2466	13	FSM	ENSMUSG00000034401.17	ENSMUST00000038868.14	2466	13	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_2	15.2103309190388	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGGTATTTTCATAGGT	NA	False	NA	20	True	AATAAA	-35	NA	111577180	111686339	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_111577455_111603337_111603476_111604951_111605001_111624859_111624902_111625912_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127_111663228_111679937_111680030_111685382
ENSMUST00000038913.16	chr7	+	2822	18	FSM	ENSMUSG00000035632.17	ENSMUST00000038913.16	2822	18	0	0	0	0	multi-exon	FALSE	canonical	3	860	junction_1	78.9623448430591	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCCTCTCCTATCCC	2812	False	NA	NA	False	AATAAA	-23	NA	3648350	3664108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3648584_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3658952_3659031_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
ENSMUST00000038945.6	chr1	+	1435	2	FSM	ENSMUSG00000041801.6	ENSMUST00000038945.6	1435	2	0	0	0	0	multi-exon	FALSE	canonical	3	639	junction_1	0	984	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCTACTGAGTGAAATTC	6745	False	NA	22	True	AATGAA	-29	NA	135693856	135696874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_135694633_135696215
ENSMUST00000038973.7	chr17	-	1234	11	FSM	ENSMUSG00000035521.14	ENSMUST00000038973.7	1234	11	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	15.4275727189989	572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATGGTTATGTATTATA	NA	False	NA	85	True	ATTAAA	-32	NA	25459090	25453290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25453697_25453781_25453864_25453953_25454086_25454155_25454239_25454318_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
ENSMUST00000039049.16	chr7	-	967	5	FSM	ENSMUSG00000040231.17	ENSMUST00000039049.16	967	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	22.466641938661	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGTCCTGTCTGTTCCTC	NA	False	NA	-3	True	AGTAAA	-29	NA	45546138	45536268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45536550_45536790_45536931_45538035_45538274_45545114_45545316_45546031
ENSMUST00000039088.9	chr11	+	1745	3	FSM	ENSMUSG00000039329.9	ENSMUST00000039088.9	1745	3	0	0	0	0	multi-exon	FALSE	canonical	3	732	junction_1	1	5495	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTATGTGTATGGTTT	NA	False	NA	26	True	AATAAA	-20	NA	121036968	121039145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_121037049_121037353_121037428_121037554
ENSMUST00000039101.12	chr16	-	2009	5	FSM	ENSMUSG00000041079.13	ENSMUST00000039101.12	2009	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	7.71362431027076	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCTTGTTATCAGTAG	NA	False	NA	-4	True	AATAAA	-17	NA	87237461	87230294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_87231515_87233460_87233824_87233951_87234020_87234181_87234403_87237324
ENSMUST00000039132.9	chr17	+	2376	4	FSM	ENSMUSG00000053600.9	ENSMUST00000039132.9	2376	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	5.18544972870135	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAAGTTGGCTGGCATAG	NA	False	NA	NA	False	AATAAA	-37	NA	33184787	33198207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_33184904_33194887_33195015_33195200_33195259_33196132
ENSMUST00000039161.10	chr9	+	918	8	FSM	ENSMUSG00000035443.11	ENSMUST00000039161.10	918	8	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_7	172.705955134082	2695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGAAGTGTTTTCTTCT	NA	False	NA	34	True	AATAAA	-15	NA	26911017	26918630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096_26918248_26918453
ENSMUST00000039234.10	chr4	+	2546	9	FSM	ENSMUSG00000040410.15	ENSMUST00000039234.10	2546	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	14.7627063914446	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTGTTAAGAATCTTT	NA	False	NA	NA	False	AATAAA	-44	NA	22357542	22434091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390676_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433566
ENSMUST00000039286.5	chr10	+	2352	8	FSM	ENSMUSG00000038160.8	ENSMUST00000039286.5	2352	8	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_3	36.7828709025918	1096	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTATGTGGTGGCTCA	NA	False	NA	NA	False	AATAAA	-18	NA	44144353	44240287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911
ENSMUST00000039388.3	chr11	+	1382	2	FSM	ENSMUSG00000034936.3	ENSMUST00000039388.3	1382	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTTGATCTGGTAACT	2550	False	NA	NA	False	ATTAAA	-18	NA	101556366	101558658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101556464_101557373
ENSMUST00000039442.12	chr3	+	2037	4	FSM	ENSMUSG00000039887.12	ENSMUST00000039442.12	2037	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	14.5143607047182	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCCAGGTATTTTAAGCA	NA	False	NA	NA	False	NA	NA	NA	121085421	121156743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_121085633_121092252_121092408_121113728_121113861_121155204
ENSMUST00000039487.10	chr17	+	2245	3	FSM	ENSMUSG00000034345.15	ENSMUST00000039487.10	2245	3	0	0	0	0	multi-exon	FALSE	canonical	3	932	junction_1	74.5	7234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGTGGAGAGAGCAAGTG	1690	False	NA	NA	False	ATTAAA	-24	NA	6130060	6136792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_6130187_6131076_6131150_6134746
ENSMUST00000039490.9	chr17	+	1290	3	FSM	ENSMUSG00000035678.9	ENSMUST00000039490.9	1290	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAGCCTTTTATTATTT	25	False	NA	NA	False	AATAAA	-10	NA	57412324	57414757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57412861_57413249_57413287_57414040
ENSMUST00000039506.15	chr1	+	2278	7	FSM	ENSMUSG00000038034.16	ENSMUST00000039506.15	2278	7	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_3	44.2329691017408	698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGTTGTGTCTTCTCTT	3743	False	NA	19	True	AATAAA	-19	NA	172139933	172147408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120_172146535_172146859_172146991_172147150
ENSMUST00000039554.7	chr2	-	2828	11	FSM	ENSMUSG00000037376.15	ENSMUST00000039554.7	2828	11	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_5	30.9683709613535	963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCATTAATGATACAATGCT	NA	False	NA	-12	True	AATAAA	-23	NA	132657974	132646126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652125_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657723
ENSMUST00000039562.8	chr14	+	1550	3	FSM	ENSMUSG00000035235.14	ENSMUST00000039562.8	1550	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	49	812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGAGTTTGTGCTGTG	NA	False	NA	18	True	AATAAA	-16	NA	61836988	61843395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_61837020_61837242_61837345_61841978
ENSMUST00000039571.14	chr3	+	1547	3	FSM	ENSMUSG00000036873.14	ENSMUST00000039571.14	1547	3	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_2	10.5	1408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTTAGCATCTTGTTT	NA	False	NA	5	True	ATTAAA	-19	NA	145643768	145650584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_145644084_145644652_145644852_145649551
ENSMUST00000039577.8	chr17	+	2574	5	FSM	ENSMUSG00000023892.9	ENSMUST00000039577.8	2574	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	22.3271135617661	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCTTCTCTCTCTCTGT	NA	False	NA	2	True	AATAAA	-18	NA	21670635	21685849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_21670684_21672698_21672790_21676558_21676651_21681922_21682050_21683633
ENSMUST00000039601.10	chr11	+	821	5	FSM	ENSMUSG00000040767.11	ENSMUST00000039601.10	821	5	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_3	16.768646337734	5993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATCAGAAAGCCATAGT	NA	False	NA	21	True	AATAAA	-22	NA	32155414	32158984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_32155664_32156959_32157051_32157556_32157663_32158333_32158409_32158684
ENSMUST00000039620.7	chr16	+	1170	3	FSM	ENSMUSG00000022947.9	ENSMUST00000039620.7	1170	3	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	11	633	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTATTTGGTTTTTGTTTGT	NA	False	NA	20	True	ATTAAA	-22	NA	93480102	93487878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_93480502_93481934_93482043_93487215
ENSMUST00000039665.8	chr15	+	2255	14	FSM	ENSMUSG00000032783.10	ENSMUST00000039665.8	2255	14	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	8.88852727732572	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAATGGGGCAGCCAGTG	NA	False	NA	8	True	AATAAA	-17	NA	98972858	98981284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_98972974_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980587_98980789_98980984_98981108
ENSMUST00000039694.13	chr13	-	1327	9	FSM	ENSMUSG00000003062.14	ENSMUST00000039694.13	1327	9	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_8	60.3857392105123	733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTGTGTTGTCTGTAT	NA	False	NA	0	True	AATAAA	-19	NA	19579965	19541845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
ENSMUST00000039758.6	chr19	-	550	2	FSM	ENSMUSG00000035885.6	ENSMUST00000039758.6	550	2	0	0	0	0	multi-exon	FALSE	canonical	3	12296	junction_1	0	166516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCATGTCCTTCTGCAC	7366	False	NA	NA	False	AATAAA	-26	NA	7194981	7192517	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_7192850_7194763
ENSMUST00000039763.14	chr10	-	1557	8	FSM	ENSMUSG00000040006.14	ENSMUST00000039763.14	1557	8	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_3	111.32321026119	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTATTTTTAATTTTT	7463	False	NA	-1	True	AATAAA	-17	NA	7656681	7643710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_7644350_7646120_7646285_7649061_7649193_7649711_7649869_7650981_7651134_7653537_7653635_7655066_7655127_7656524
ENSMUST00000039784.12	chr9	+	1762	12	FSM	ENSMUSG00000036138.17	ENSMUST00000039784.12	1762	12	0	0	0	0	multi-exon	TRUE	canonical	3	245	junction_2	23.8777880116768	1466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTTGTCATTTCCTTCA	7728	False	NA	28	True	AGTAAA	-19	NA	119170359	119179365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_119170752_119170890_119170985_119171788_119171847_119173238_119173319_119173531_119173575_119175535_119175635_119176795_119176877_119177646_119177838_119177986_119178167_119178419_119178476_119178557_119178704_119179023
ENSMUST00000039803.7	chr14	+	2139	9	FSM	ENSMUSG00000041765.7	ENSMUST00000039803.7	2139	9	0	0	0	0	multi-exon	FALSE	canonical	3	342	junction_2	40.200862863874	1554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTCAGTAGTTTTTATA	8886	False	NA	16	True	AATAAA	-16	NA	122116031	122258446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
ENSMUST00000039818.10	chr4	+	3382	15	FSM	ENSMUSG00000028737.16	ENSMUST00000039818.10	3382	15	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_3	22.7807876447301	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGATCGTGTGTGTC	NA	False	NA	26	True	NA	NA	NA	139350176	139377001	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_139350509_139361025_139361120_139361207_139361301_139361974_139362023_139362699_139362856_139364269_139364420_139364496_139364572_139365685_139365874_139367923_139367998_139369387_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468
ENSMUST00000039846.12	chr17	-	865	4	FSM	ENSMUSG00000064308.11	ENSMUST00000039846.12	865	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	4.49691252107735	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAAAATTTTGTGTGTTT	NA	False	NA	-20	True	ATTAAA	-29	NA	37292129	37288592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_37288999_37289360_37289439_37289542_37289826_37292031
ENSMUST00000039894.13	chr13	-	1844	17	FSM	ENSMUSG00000039233.13	ENSMUST00000039894.13	1844	17	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	17.0705109399221	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGATTTCTCTGCCCTTTC	NA	False	NA	-5	True	AATAAA	-14	NA	14214223	14172536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178127_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
ENSMUST00000039900.4	chr11	-	918	2	FSM	ENSMUSG00000032673.6	ENSMUST00000039900.4	918	2	0	0	0	0	multi-exon	FALSE	canonical	3	382	junction_1	0	3969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTGTCTTTAATTTG	NA	False	NA	-1	True	AATAAA	-23	NA	29465033	29462875	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_29463677_29464916
ENSMUST00000039949.5	chr11	-	2444	9	FSM	ENSMUSG00000039055.5	ENSMUST00000039949.5	2444	9	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_8	32.4422563950167	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGAGCTTGGAGGAAGAC	4403	False	NA	-5	True	AATAAA	-18	NA	94544790	94535821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_94536432_94536641_94536832_94538116_94538233_94538453_94538575_94538769_94538889_94538968_94539056_94540833_94540965_94541048_94541850_94544521
ENSMUST00000039998.11	chr7	+	1946	6	FSM	ENSMUSG00000037463.15	ENSMUST00000039998.11	1946	6	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_2	20.7460839678239	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTCATATCTTTTTCTT	8845	False	NA	NA	False	AATAAA	-19	NA	28392273	28398763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28392398_28392694_28393076_28394158_28394268_28394430_28394527_28396064_28396201_28397663
ENSMUST00000040005.13	chr2	-	1228	10	FSM	ENSMUSG00000040174.15	ENSMUST00000040005.13	1228	10	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	32.7210431781547	993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8875	False	NA	-7	True	ATTAAA	-20	NA	93841075	93810981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
ENSMUST00000040042.11	chr2	-	1150	7	FSM	ENSMUSG00000015083.12	ENSMUST00000040042.11	1150	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	2.38047614284762	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTTGTCGTTTTTTGTC	NA	False	NA	-1	True	ATTAAA	-19	NA	25390625	25388662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25388836_25388916_25388956_25389025_25389128_25389409_25389518_25389600_25389672_25389850_25389988_25390105
ENSMUST00000040077.8	chr15	+	452	5	FSM	ENSMUSG00000033020.8	ENSMUST00000040077.8	452	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	888.21224940889	1958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTTTTATATGTGTAAATA	NA	False	NA	-18	True	NA	NA	NA	79025550	79035928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_79025635_79028793_79028864_79030252_79030339_79035535_79035608_79035788
ENSMUST00000040135.9	chr10	+	1286	8	FSM	ENSMUSG00000040034.16	ENSMUST00000040135.9	1286	8	0	0	0	0	multi-exon	FALSE	canonical	3	1090	junction_2	84.4680835751418	4653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAATGTTGGCTTGCTGCT	NA	False	NA	20	True	AATAAA	-20	NA	7543266	7554645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_7543446_7543765_7543889_7545316_7545395_7546702_7546884_7549348_7549485_7550769_7550922_7552003_7552127_7554331
ENSMUST00000040148.11	chr3	-	2599	19	FSM	ENSMUSG00000037325.11	ENSMUST00000040148.11	2599	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	9.57507695872112	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTGTCTTTATATATT	NA	False	NA	NA	False	ATTAAA	-21	NA	36667538	36627290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_36627772_36629442_36629567_36629693_36629798_36629891_36630002_36632544_36632710_36636774_36636915_36644800_36644867_36646513_36646589_36648516_36648710_36652414_36652518_36653487_36653573_36656977_36657109_36658554_36658672_36659832_36659906_36661669_36661857_36664328_36664501_36664710_36664778_36666160_36666227_36667398
ENSMUST00000040154.9	chr5	-	571	3	FSM	ENSMUSG00000041697.10	ENSMUST00000040154.10	571	3	0	0	0	0	multi-exon	FALSE	canonical	3	7177	junction_2	62.5	77124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGACGGTACGATTTTAT	4854	False	NA	-26	True	AATAAA	-26	NA	115487040	115483700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_115483986_115486623_115486767_115486897
ENSMUST00000040167.11	chr11	-	1949	7	FSM	ENSMUSG00000042032.14	ENSMUST00000040167.11	1949	7	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_6	119.767367100652	1727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40583601	40570140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40583304
ENSMUST00000040177.7	chr17	+	976	3	FSM	ENSMUSG00000036214.15	ENSMUST00000040177.7	976	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	121.5	701	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTTTGCTAATGGTACC	NA	False	NA	17	True	AATAAA	-17	NA	37269483	37276514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_37269595_37275248_37275325_37275725
ENSMUST00000040248.9	chr16	-	3282	20	FSM	ENSMUSG00000041974.11	ENSMUST00000040248.9	3282	20	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_3	29.6569490345649	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGGTTTTAGTGTT	1947	False	NA	0	True	AATAAA	-18	NA	15964715	15707087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_15707650_15713006_15713061_15713389_15713505_15715087_15715182_15720772_15720920_15721920_15722126_15730382_15730443_15730532_15730674_15733163_15733252_15754416_15754558_15784465_15784717_15786391_15786582_15855353_15855574_15865867_15865969_15871129_15871381_15932690_15932846_15936670_15936848_15957869_15957937_15958571_15958728_15964608
ENSMUST00000040270.6	chr19	-	2757	11	FSM	ENSMUSG00000025228.6	ENSMUST00000040270.6	2757	11	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_3	19.222122671547	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGACCTCTTTCTGT	NA	False	NA	-2	True	AATAAA	-19	NA	46384186	46365249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_46366909_46367046_46367088_46367851_46367914_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370858_46372658_46372785_46373451_46373528_46375890_46375956_46384068
ENSMUST00000040284.6	chr18	+	979	3	FSM	ENSMUSG00000036299.6	ENSMUST00000040284.6	979	3	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	315	3277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTCCTGCTTTTTGTCTTT	NA	False	NA	26	True	ATTAAA	-17	NA	75138938	75143004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_75139086_75141721_75141898_75142348
ENSMUST00000040312.7	chr2	-	2026	4	FSM	ENSMUSG00000032715.10	ENSMUST00000040312.7	2026	4	0	0	0	0	multi-exon	FALSE	canonical	3	926	junction_3	7.71722460186015	1256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGGTGACTTTCTCT	NA	False	NA	-4	True	AATAAA	-29	NA	152185952	152179341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_152180608_152181634_152181928_152184956_152185248_152185776
ENSMUST00000040313.6	chr15	-	1276	2	FSM	ENSMUSG00000037525.6	ENSMUST00000040313.6	1276	2	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	0	445	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGTGTCGTTTCTTTGCT	NA	False	NA	0	True	ATTAAA	-19	NA	99372611	99367959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_99368961_99372336
ENSMUST00000040314.12	chr2	-	1599	12	FSM	ENSMUSG00000037197.12	ENSMUST00000040314.12	1599	12	0	0	0	0	multi-exon	FALSE	canonical	3	1239	junction_6	93.4948621914506	3487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTCTCTGGTTGTTTCT	NA	False	NA	-24	True	TATAAA	-18	NA	11608073	11590247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_11590540_11590644_11590718_11591677_11591777_11592531_11592606_11593738_11593903_11595499_11595642_11598218_11598276_11600141_11600240_11601439_11601607_11602862_11602980_11605429_11605568_11607895
ENSMUST00000040330.15	chr8	-	1690	11	FSM	ENSMUSG00000038215.16	ENSMUST00000040330.15	1690	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_10	43.9777216326631	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003892	56984556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003579
ENSMUST00000040402.14	chr17	-	1599	3	FSM	ENSMUSG00000036398.14	ENSMUST00000040402.14	1599	3	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_2	5	5696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGTGTTAAATACAGGC	NA	False	NA	NA	False	AATAAA	-15	NA	37262605	37259247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_37260447_37260768_37260878_37262314
ENSMUST00000040411.7	chr4	-	761	2	FSM	ENSMUSG00000089687.3	ENSMUST00000040411.7	761	2	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132030696	132029507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132029994_132030421
ENSMUST00000040416.8	chr8	-	2547	12	FSM	ENSMUSG00000015023.8	ENSMUST00000040416.8	2547	12	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_8	46.4642402265948	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATGTTTGTGTACACTT	7686	False	NA	-28	True	ATTAAA	-10	NA	111724432	111701627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_111702723_111703060_111703253_111703599_111703763_111705099_111705338_111705667_111705846_111707184_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111724298
ENSMUST00000040423.12	chr2	+	1691	4	FSM	ENSMUSG00000032679.13	ENSMUST00000040423.12	1691	4	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	38.5082963644055	1325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGATTATCTTGACTCTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	103926145	103945699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_103926273_103934515_103934595_103941084_103941190_103944319
ENSMUST00000040428.4	chr11	-	611	3	FSM	ENSMUSG00000093989.2	ENSMUST00000040428.4	611	3	0	0	0	0	multi-exon	FALSE	canonical	3	718	junction_2	4	8472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCTGTCTGTGCTTTCA	NA	False	NA	-1	True	AATAAA	-20	NA	70130668	70128949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70129297_70129763_70129841_70130481
ENSMUST00000040430.8	chr11	-	2766	6	FSM	ENSMUSG00000034993.8	ENSMUST00000040430.8	2766	6	0	0	0	0	multi-exon	TRUE	canonical	3	320	junction_5	13.7462722219517	921	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTGACCAGATGTTGTAT	NA	False	NA	-11	True	AATAAA	-15	NA	101357056	101349570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_101351103_101351202_101351445_101353023_101353114_101353215_101353387_101353734_101353943_101356533
ENSMUST00000040440.7	chr17	-	1205	6	FSM	ENSMUSG00000036438.15	ENSMUST00000040440.7	1205	6	0	0	0	0	multi-exon	FALSE	canonical	3	6557	junction_1	335.908082665482	6819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGCTCTGAATCTGAGT	NA	False	NA	-5	True	AATAAA	-21	NA	87754363	87740839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
ENSMUST00000040484.6	chr8	-	1443	5	FSM	ENSMUSG00000034424.6	ENSMUST00000040484.6	1443	5	0	0	0	0	multi-exon	FALSE	canonical	3	1952	junction_3	87.9982244139051	11241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGGTGTGGTGGTGCA	NA	False	NA	NA	False	NA	NA	NA	117720276	117708548	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_117709466_117710546_117710679_117714051_117714116_117715862_117715943_117720026
ENSMUST00000040518.6	chr15	+	1942	13	FSM	ENSMUSG00000033047.6	ENSMUST00000040518.6	1942	13	0	0	0	0	multi-exon	FALSE	canonical	3	1651	junction_4	129.272537257102	3155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTGGTCTCATTATTAT	NA	False	NA	30	True	AGTAAA	-20	NA	78959378	78978605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
ENSMUST00000040519.12	chr12	+	1065	5	FSM	ENSMUSG00000037787.15	ENSMUST00000040519.12	1065	5	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_3	10.0343161201947	2944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGTGCAAGTTGAGAATAA	1541	False	NA	NA	False	TTTAAA	-1	NA	111679694	111700654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_111679853_111689045_111689244_111690773_111690838_111696455_111696547_111700100
ENSMUST00000040536.6	chr12	+	955	3	FSM	ENSMUSG00000034266.7	ENSMUST00000040536.6	955	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGAAAGCGGCTTCCC	NA	False	NA	NA	False	AATAAA	-18	NA	85733442	85755861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_85733748_85736041_85736147_85755316
ENSMUST00000040538.10	chr1	+	1948	12	FSM	ENSMUSG00000038936.14	ENSMUST00000040538.10	1948	12	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_9	16.3434218576322	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCCCCTTTTTTGGT	NA	False	NA	12	True	AATAAA	-19	NA	179495774	179514754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_179496111_179498147_179498261_179503955_179504037_179505605_179505736_179506444_179506495_179507149_179507281_179508056_179508175_179508997_179509118_179509215_179509273_179511769_179511882_179513260_179513343_179514136
ENSMUST00000040560.11	chr10	-	1206	6	FSM	ENSMUSG00000040521.12	ENSMUST00000040560.11	1206	6	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_5	79.6728310027954	1972	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTGTGAGTGTGTGT	NA	False	NA	-3	True	AATAAA	-24	NA	126866709	126858200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_126858796_126860804_126860893_126864233_126864357_126865422_126865552_126866331_126866506_126866612
ENSMUST00000040577.5	chr11	+	1510	4	FSM	ENSMUSG00000038046.5	ENSMUST00000040577.5	1510	4	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	6.53197264742181	745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATATGAGTGTTTGCAGG	550	False	NA	23	True	ATTAAA	-31	NA	76134540	76141445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_76134913_76135104_76135350_76138172_76138341_76140720
ENSMUST00000040607.6	chr6	+	743	4	FSM	ENSMUSG00000034192.6	ENSMUST00000040607.6	743	4	0	0	0	0	multi-exon	FALSE	canonical	3	1484	junction_1	387.955610290089	22681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTTTTTAATGTGTCT	NA	False	NA	47	True	ATTAAA	-23	NA	91492909	91499607	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_91493061_91494029_91494141_91496530_91496627_91499222
ENSMUST00000040656.8	chr13	+	1253	7	FSM	ENSMUSG00000038286.12	ENSMUST00000040656.8	1253	7	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	28.0356915377524	1042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTCCTGTTTGCTA	NA	False	NA	15	True	AATAAA	-17	NA	34221579	34258057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416_34244549_34247892_34248017_34257658
ENSMUST00000040735.12	chr17	-	1496	11	FSM	ENSMUSG00000036820.13	ENSMUST00000040735.12	1496	11	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_8	20.5156038175824	1260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382740	24374806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382169_24382307_24382555
ENSMUST00000040746.8	chr17	-	720	4	FSM	ENSMUSG00000079707.11	ENSMUST00000040746.8	720	4	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	6.37704215656966	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGAGCCTCGTGTTACC	NA	False	NA	NA	False	AATAAA	-14	NA	15261750	15247415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_15247580_15250770_15250927_15253608_15253816_15261557
ENSMUST00000040766.9	chr12	-	1482	5	FSM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	0	0	0	0	multi-exon	FALSE	canonical	3	1293	junction_2	34.3110769285955	5869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTCCTTGTGTATGTGT	8464	False	NA	-5	True	ATTAAA	-20	NA	85421621	85389561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
ENSMUST00000040776.6	chr8	-	1814	13	FSM	ENSMUSG00000036672.6	ENSMUST00000040776.6	1814	13	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	25.0593739391514	750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAAGTTAGCGATATT	NA	False	NA	NA	False	ATTAAA	-12	NA	106578686	106571308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
ENSMUST00000040806.5	chr11	+	581	2	FSM	ENSMUSG00000038057.5	ENSMUST00000040806.5	581	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAGTGGAGTCTGTGGCA	NA	False	NA	NA	False	AATAAA	-15	NA	76108433	76109492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_76108575_76109052
ENSMUST00000040824.2	chr3	+	404	2	FSM	ENSMUSG00000042737.10	ENSMUST00000040824.2	404	2	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	0	9384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTGTGTAGTTTTGAGT	6777	False	NA	17	True	ATTAAA	-18	NA	89173858	89174384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89173914_89174035
ENSMUST00000040828.7	chr17	+	1212	6	FSM	ENSMUSG00000073421.7	ENSMUST00000040828.7	1212	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	17.3735431043872	359	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCTTTGATAATTGCTG	NA	False	NA	12	True	NA	NA	NA	34482182	34488393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34482380_34483734_34484008_34486309_34486592_34486896_34487008_34487434_34487459_34488068
ENSMUST00000040860.3	chr18	+	1692	7	FSM	ENSMUSG00000036743.5	ENSMUST00000040860.3	1692	7	0	0	0	0	multi-exon	TRUE	canonical	3	86	junction_2	7.18795288428261	718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAGAGTGTCTCCTTCAA	NA	False	NA	10	True	NA	NA	NA	14839207	14895355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_14839390_14854223_14854351_14859560_14859686_14864035_14864159_14890338_14890459_14890678_14890742_14894403
ENSMUST00000040873.12	chr5	-	3024	20	FSM	ENSMUSG00000037364.13	ENSMUST00000040873.12	3024	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	186.551382419291	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTATGTCCCTTCCCAA	8257	False	NA	-1	True	AGTAAA	-29	NA	137305936	137293965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
ENSMUST00000040881.14	chr16	+	1779	12	FSM	ENSMUSG00000014232.15	ENSMUST00000040881.14	1779	12	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_6	16.217019933921	1142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGCTGCTATTATTAT	3094	False	NA	7	True	AATACA	-17	NA	3726688	3759011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_3727018_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741703_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755422_3755479_3758631
ENSMUST00000040917.14	chr9	+	499	4	FSM	ENSMUSG00000036781.14	ENSMUST00000040917.14	499	4	0	0	0	0	multi-exon	FALSE	canonical	3	10808	junction_3	618.277355956765	102640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTCCTCCCTCTGCTT	NA	False	NA	30	True	AATAAA	-14	NA	66853367	66856794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_66853463_66854112_66854222_66854868_66854980_66856610
ENSMUST00000040924.9	chr18	-	3098	11	FSM	ENSMUSG00000037013.18	ENSMUST00000040924.9	3098	11	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_3	289.216597034126	1380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTTTCTTTAAATTAG	NA	False	NA	-13	True	AATAAA	-23	NA	14815971	14758679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ENSMUST00000041003.8	chr17	-	1402	7	FSM	ENSMUSG00000036983.8	ENSMUST00000041003.8	1402	7	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	6.8414585839246	1172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAAACCTAACAGCTCAAA	NA	False	NA	NA	False	AATAAA	-16	NA	3608056	3569530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_3570071_3571919_3572048_3586352_3586473_3593371_3593524_3595857_3595967_3605206_3605359_3607855
ENSMUST00000041005.6	chr9	+	632	6	FSM	ENSMUSG00000059412.8	ENSMUST00000041005.6	632	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	6.73498329619309	1235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGAGTGCTTATCATTC	NA	False	NA	34	True	AATGAA	-20	NA	45314435	45321576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_45314599_45319403_45319443_45319597_45319673_45320810_45320848_45321000_45321032_45321289
ENSMUST00000041008.10	chr12	+	2613	12	FSM	ENSMUSG00000033373.17	ENSMUST00000041008.10	2613	12	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_4	27.7548298231568	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGTCTTTTTTTTTTC	NA	False	NA	14	True	AATAAA	-15	NA	76884187	76968186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_76884426_76909259_76909325_76920149_76920223_76921805_76921898_76934505_76934653_76934745_76934830_76944100_76944188_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
ENSMUST00000041024.15	chr10	-	2513	13	FSM	ENSMUSG00000038302.15	ENSMUST00000041024.15	2513	13	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_11	7.72801541291309	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	1	True	AATAAA	-18	NA	42354561	42188580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42354258
ENSMUST00000041042.13	chr11	+	1957	9	FSM	ENSMUSG00000034412.14	ENSMUST00000041042.13	1957	9	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_8	26.2963875846094	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTGTGTATAGTTAGGAC	1549	False	NA	24	True	AATAAA	-15	NA	4136788	4165505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_4137100_4155756_4155857_4159925_4160034_4162140_4162248_4162784_4162900_4162977_4163044_4163556_4163747_4163836_4163992_4164700
ENSMUST00000041045.14	chr3	+	1069	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	0	0	0	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	129409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	32	True	ATTAAA	-21	NA	137570247	137572683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
ENSMUST00000041053.11	chr18	+	1516	10	FSM	ENSMUSG00000036880.11	ENSMUST00000041053.11	1516	10	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_8	17.7325814376939	1278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAACCTTTTCTTGTTGGT	NA	False	NA	13	True	AATAAA	-17	NA	74912267	74939279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_74912337_74920189_74920357_74925421_74925551_74926357_74926475_74928201_74928350_74931382_74931559_74932115_74932246_74934367_74934439_74937071_74937227_74938925
ENSMUST00000041097.13	chr7	+	2081	9	FSM	ENSMUSG00000041769.14	ENSMUST00000041097.13	2081	9	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_4	89.4111814875522	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGCAGTCTTTATTT	NA	False	NA	20	True	AATAAA	-34	NA	138448087	138484786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_138448245_138448340_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
ENSMUST00000041100.4	chr5	+	1773	3	FSM	ENSMUSG00000039754.11	ENSMUST00000041100.4	1773	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	0.5	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAATTTCTCCTTTTCC	NA	False	NA	NA	False	AATAAA	-23	NA	136165007	136170466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_136165149_136168191_136168390_136169032
ENSMUST00000041122.11	chr4	+	672	5	FSM	ENSMUSG00000042198.13	ENSMUST00000041122.11	672	5	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_1	68.1762421962372	6229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGGGGTTTTTTTTTG	-5	True	NA	30	True	ATTAAA	-23	NA	3938913	3943528	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720_3942820_3943387
ENSMUST00000041160.13	chr4	+	1192	3	FSM	ENSMUSG00000038607.13	ENSMUST00000041160.13	1192	3	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_2	16.5	839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTGTTTGGTGTCT	1876	False	NA	35	True	AATAAA	-35	NA	59035087	59041903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_59035319_59039226_59039359_59041074
ENSMUST00000041164.4	chr15	+	742	5	FSM	ENSMUSG00000033099.11	ENSMUST00000041164.4	742	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	186.959053003592	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTCTGTGCTTGTGCT	NA	False	NA	10	True	NA	NA	NA	78819194	78825064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_78819276_78820678_78820785_78821333_78821383_78824265_78824367_78824659
ENSMUST00000041190.17	chr15	-	1916	15	FSM	ENSMUSG00000037570.17	ENSMUST00000041190.17	1916	15	0	0	0	0	multi-exon	FALSE	canonical	3	647	junction_2	85.1129201923742	839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTTTTATTTTTTTTTA	NA	False	NA	1	True	AATAAA	-21	NA	99149842	99140697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149742
ENSMUST00000041208.9	chr15	-	1811	16	FSM	ENSMUSG00000036678.9	ENSMUST00000041208.9	1811	16	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_7	35.3844912669692	1570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGATGTAACTCCGAGTG	NA	False	NA	-5	True	AATAAA	-25	NA	102259194	102246686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
ENSMUST00000041262.14	chr12	+	676	4	FSM	ENSMUSG00000090258.8	ENSMUST00000041262.14	676	4	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_2	1.88561808316413	5213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGTATGTTTTCTTTT	NA	False	NA	9	True	AATGAA	-3	NA	76812311	76829954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586
ENSMUST00000041264.15	chr10	-	2035	4	FSM	ENSMUSG00000062931.16	ENSMUST00000041264.15	2035	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	52.6898683071254	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATGTTGTCATTA	NA	False	NA	NA	False	NA	NA	NA	82077107	82060683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_82062428_82063364_82063426_82063632_82063760_82077004
ENSMUST00000041314.17	chr18	+	1475	4	FSM	ENSMUSG00000037058.17	ENSMUST00000041314.17	1475	4	0	0	0	0	multi-exon	FALSE	canonical	3	2803	junction_2	114.719948860983	13417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGCTTGTGTTATTGG	4640	False	NA	22	True	AATAAA	-16	NA	35731669	35750239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35731813_35743923_35744088_35746375_35746556_35749251
ENSMUST00000041316.15	chr12	-	1398	4	FSM	ENSMUSG00000041359.15	ENSMUST00000041316.15	1398	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	814.330945555238	4466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCTCTTGGAATTATG	NA	False	NA	-2	True	AATAAA	-23	NA	105188996	105183008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_105183961_105184481_105184552_105184917_105185089_105188791
ENSMUST00000041362.12	chr2	+	2867	7	FSM	ENSMUSG00000037523.14	ENSMUST00000041362.12	2867	7	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_4	7.24377127070024	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTGAGTTCCAAATTTC	7264	False	NA	14	True	ATTAAA	-19	NA	131075986	131089945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_131076048_131080655_131080831_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
ENSMUST00000041364.13	chr5	-	2702	18	FSM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_10	61.2066102226557	1512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGGCTGTGTGGTGTGTT	NA	False	NA	-5	True	AATAAA	-16	NA	34817492	34795879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
ENSMUST00000041366.14	chr5	+	646	4	FSM	ENSMUSG00000039771.14	ENSMUST00000041366.14	646	4	0	0	0	0	multi-exon	FALSE	canonical	3	1103	junction_2	77.5471182930453	9019	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGCAGTGTGTGGACTG	9212	False	NA	30	True	AATAAA	-19	NA	136145484	136151801	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_136145660_136148848_136148939_136150942_136151118_136151595
ENSMUST00000041367.9	chr8	-	2312	13	FSM	ENSMUSG00000037103.9	ENSMUST00000041367.9	2312	13	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	56.6688112339289	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGGTGTCCTGTTCTGT	9263	False	NA	-3	True	ACTAAA	-17	NA	84831391	84823700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84824138_84824251_84824482_84824564_84824670_84824827_84824914_84824990_84825120_84825207_84825300_84825386_84825822_84828304_84828476_84828560_84828701_84828792_84828900_84829374_84829511_84829584_84829683_84831245
ENSMUST00000041370.11	chrX	-	3862	10	FSM	ENSMUSG00000038344.15	ENSMUST00000041370.11	3862	10	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	53.4535681747934	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTTCTGTGTATTATT	NA	False	NA	NA	False	AGTAAA	-17	NA	161612450	161561914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_161564415_161565224_161565321_161567317_161567411_161569612_161569688_161570554_161570675_161573607_161573803_161580635_161580807_161590480_161590573_161594287_161594592_161612234
ENSMUST00000041438.7	chr10	+	2600	10	FSM	ENSMUSG00000038332.14	ENSMUST00000041438.7	2600	10	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	20.085619202938	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCTTTATTAATTTCAT	NA	False	NA	8	True	AATAAA	-15	NA	41763434	41784420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_41763592_41770037_41770104_41770815_41771017_41772018_41772202_41774178_41774422_41778524_41778673_41779687_41779801_41781169_41781361_41782331_41782477_41783267
ENSMUST00000041466.14	chr5	+	2492	4	FSM	ENSMUSG00000034173.14	ENSMUST00000041466.14	2492	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	2120.04764097414	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTGTCTCAAAAAAAATTT	6005	False	NA	NA	False	AATAAA	-17	NA	129924563	129932464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129924694_129928023_129928274_129929185_129929337_129930503
ENSMUST00000041569.5	chr8	+	1288	9	FSM	ENSMUSG00000036598.5	ENSMUST00000041569.5	1288	9	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	2.77263412660235	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTCCTCTCACTTGTTG	NA	False	NA	NA	False	ATTAAA	-23	NA	96260712	96285518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_96260901_96263092_96263220_96264719_96264882_96267426_96267583_96269249_96269331_96272521_96272678_96277824_96277933_96283818_96283975_96285364
ENSMUST00000041621.5	chr1	+	1485	2	FSM	ENSMUSG00000037216.6	ENSMUST00000041621.5	1485	2	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	0	489	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCCTTTTCCTTAAGG	NA	False	NA	15	True	ATTAAA	-15	NA	37911286	37915309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_37911407_37913944
ENSMUST00000041640.5	chr12	+	2456	10	FSM	ENSMUSG00000036188.5	ENSMUST00000041640.5	2456	10	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_5	20.5882622678524	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTTGTTTCATAATTCGT	NA	False	NA	21	True	AATAAA	-20	NA	36207112	36247290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_36207423_36215868_36215934_36220447_36220587_36226578_36226678_36232346_36232508_36236724_36236940_36237648_36237785_36243668_36243798_36244982_36245113_36246218
ENSMUST00000041686.10	chr19	-	1000	6	FSM	ENSMUSG00000037349.10	ENSMUST00000041686.10	1000	6	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	17.04582060213	967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTTAGCTTCTGCTGCT	7045	False	NA	-3	True	AATAAA	-17	NA	6973405	6970385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6970571_6970800_6970895_6971029_6971128_6972038_6972138_6972609_6973104_6973375
ENSMUST00000041703.10	chr7	+	662	7	FSM	ENSMUSG00000060962.13	ENSMUST00000041703.10	662	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.34370962471642	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCTCTTGACTCCTTAT	NA	False	NA	NA	False	AATAAA	-22	NA	30475825	30480488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30475924_30477032_30477081_30477186_30477235_30477625_30477695_30479102_30479130_30479257_30479306_30480164
ENSMUST00000041806.13	chr12	+	2690	12	FSM	ENSMUSG00000019969.15	ENSMUST00000041806.13	2690	12	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_9	21.5122490573192	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCTCTCTGTCCTGGCTGG	3345	False	NA	9	True	ATTAAA	-20	NA	83734925	83781869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_83735068_83746128_83746196_83746285_83746426_83759077_83759329_83761537_83761680_83769764_83769833_83771269_83771491_83774999_83775099_83775471_83775559_83777312_83777487_83778447_83778567_83780689
ENSMUST00000041826.14	chr3	+	2678	10	FSM	ENSMUSG00000036503.14	ENSMUST00000041826.14	2678	10	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_9	27.8053196793192	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTCTTTGTTGAGTTTT	NA	False	NA	NA	False	AAGAAA	-42	NA	57643482	57742652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
ENSMUST00000041830.10	chr2	+	1387	4	FSM	ENSMUSG00000026857.10	ENSMUST00000041830.10	1387	4	0	0	0	0	multi-exon	FALSE	canonical	3	480	junction_2	33.3466640010661	2106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTGTGTGGATGTATGT	NA	False	NA	27	True	AATAAA	-33	NA	30697837	30713045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_30698096_30709640_30709845_30710460_30710714_30712373
ENSMUST00000041859.9	chr13	-	1713	11	FSM	ENSMUSG00000038372.15	ENSMUST00000041859.9	1713	11	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_5	9.43186089804128	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGTTTGCTGTGTATGTT	NA	False	NA	-4	True	ATTAAA	-26	NA	32522723	32003561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_32003962_32004124_32004194_32101602_32101700_32124466_32124586_32284339_32284468_32310982_32311088_32311889_32312083_32409117_32409228_32411197_32411286_32418335_32418381_32522364
ENSMUST00000041882.7	chr10	+	678	3	FSM	ENSMUSG00000035595.7	ENSMUST00000041882.7	678	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	13	585	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGTGTCCTGGTGAAGT	NA	False	NA	43	True	AATGAA	-45	NA	80008777	80010980	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80009009_80010042_80010160_80010650
ENSMUST00000041954.10	chr3	-	892	4	FSM	ENSMUSG00000036513.16	ENSMUST00000041954.10	892	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	244.439949453621	1498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCTAGACAGTTC	NA	False	NA	-11	True	AATAAA	-19	NA	57559129	57553779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_57554298_57557462_57557637_57558842_57558921_57559007
ENSMUST00000041998.2	chr2	+	737	3	FSM	ENSMUSG00000039138.2	ENSMUST00000041998.2	737	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	6	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCTTGGTAATGACCCT	NA	False	NA	7	True	AATAAA	-22	NA	179056728	179058675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_179056894_179057552_179057714_179058264
ENSMUST00000042055.10	chr2	+	2586	10	FSM	ENSMUSG00000039515.12	ENSMUST00000042055.10	2586	10	0	0	0	0	multi-exon	TRUE	canonical	3	440	junction_4	51.3501655905104	809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTGTGTGAGACATCTTT	NA	False	NA	17	True	ATTAAA	-20	NA	30306050	30337817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_30306345_30316410_30316509_30318327_30318415_30321972_30322099_30325575_30325694_30327581_30327682_30328240_30328366_30329675_30329777_30333301_30333410_30336388
ENSMUST00000042105.11	chr7	-	2333	3	FSM	ENSMUSG00000040435.13	ENSMUST00000042105.11	2333	3	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_2	34	747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTACGTGTGTTCTTTAT	3861	False	NA	44	True	AATAAA	-24	NA	45175692	45172340	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45172747_45173162_45174816_45175418
ENSMUST00000042146.15	chr5	+	1473	10	FSM	ENSMUSG00000029125.15	ENSMUST00000042146.15	1473	10	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	33.2335543660691	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAGTCAGTGAGTCTCCA	NA	False	NA	19	True	AATAAA	-19	NA	38196594	38294167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_38196844_38249856_38249925_38262221_38262338_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293606
ENSMUST00000042147.6	chr5	-	2075	15	FSM	ENSMUSG00000033294.12	ENSMUST00000042147.6	2075	15	0	0	0	0	multi-exon	FALSE	canonical	3	589	junction_9	55.5126847059778	1433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTGGCTAAATGTTTTT	8841	False	NA	NA	False	NA	NA	NA	110801283	110796283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_110796850_110796931_110797046_110797197_110797281_110797398_110797560_110797669_110797781_110797937_110797999_110798200_110798313_110798399_110798451_110798810_110798846_110798977_110799078_110799177_110799328_110799544_110799653_110800178_110800286_110800876_110800998_110801088
ENSMUST00000042148.6	chr3	-	783	3	FSM	ENSMUSG00000040269.6	ENSMUST00000042148.6	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	890	junction_1	0.5	14228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGCCGTGGTTCTTTT	NA	False	NA	-1	True	NA	NA	NA	8988978	8867205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_8867475_8965045_8965228_8988646
ENSMUST00000042166.11	chr7	+	1452	3	FSM	ENSMUSG00000038646.14	ENSMUST00000042166.11	1452	3	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	195	8170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTAGTTTTGACAGCCC	NA	False	NA	NA	False	AATAAA	-30	NA	81412672	81419239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_81412805_81417274_81417472_81418116
ENSMUST00000042191.12	chr5	+	832	4	FSM	ENSMUSG00000034211.15	ENSMUST00000042191.12	832	4	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_1	196.309845793724	3776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGGCAGCTTGATTTT	760	False	NA	23	True	CATAAA	-12	NA	129792566	129795544	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129792614_129792747_129792828_129793790_129793931_129794979
ENSMUST00000042227.15	chr11	+	2196	5	FSM	ENSMUSG00000041623.18	ENSMUST00000042227.15	2196	5	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_1	114.630929508575	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575237	113585473	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_113575637_113578599_113580048_113582554_113582660_113583220_113583329_113585337
ENSMUST00000042235.15	chr9	-	1794	8	FSM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	0	0	0	0	multi-exon	FALSE	canonical	3	9075	junction_7	2138.51814038008	263521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGGTCAATGCTGAAAGT	7100	False	NA	NA	False	ATTAAA	-22	NA	78389006	78385730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
ENSMUST00000042281.14	chr11	+	1553	7	FSM	ENSMUSG00000042569.14	ENSMUST00000042281.14	1553	7	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	30.3845721085919	1589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGCTCTTAGTTTGGC	NA	False	NA	NA	False	NA	NA	NA	60721456	60749249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_60721558_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
ENSMUST00000042329.12	chrX	+	2447	5	FSM	ENSMUSG00000042271.14	ENSMUST00000042329.12	2447	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	115.070358911407	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141010932	141022688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_141011010_141011286_141011378_141012519_141012607_141019779_141019925_141020641
ENSMUST00000042334.16	chr17	+	830	6	FSM	ENSMUSG00000037805.16	ENSMUST00000042334.16	830	6	0	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_4	1458.64553610533	170090	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGTGTGCCTGTGATTG	NA	False	NA	1	True	AATAAA	-20	NA	28547444	28550007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
ENSMUST00000042345.8	chr18	+	3733	18	FSM	ENSMUSG00000037815.8	ENSMUST00000042345.8	3733	18	0	0	0	0	multi-exon	FALSE	canonical	3	1584	junction_14	159.493141807844	684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCAGAAGTCGTTCTT	NA	False	NA	33	True	AATAAA	-21	NA	35251911	35387832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
ENSMUST00000042360.5	chr15	+	949	5	FSM	ENSMUSG00000039676.5	ENSMUST00000042360.5	949	5	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	9.67923034130297	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGCCTCCTTTGAAGCT	-3	True	NA	9	True	AATAAA	-22	NA	9436113	9466124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_9436254_9457782_9457920_9461742_9461921_9462676_9462887_9465840
ENSMUST00000042390.5	chr2	+	3755	13	FSM	ENSMUSG00000036646.14	ENSMUST00000042390.5	3755	13	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_8	34.4394597647653	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGCAGTGTTACTTT	3965	False	NA	33	True	ATTAAA	-21	NA	25222740	25242224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618_25231729_25233235_25233422_25234979_25235129_25235417_25235607_25238047_25238239_25238582_25238704_25239181_25239380_25239462_25239595_25240373
ENSMUST00000042405.8	chr7	+	1197	9	FSM	ENSMUSG00000046865.8	ENSMUST00000042405.8	1197	9	0	0	0	0	multi-exon	FALSE	canonical	3	2081	junction_3	279.620725269069	14389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGTCTGGTGCCTATT	8531	False	NA	0	True	ATTAAA	-14	NA	27869134	27878694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27869244_27873928_27874112_27874209_27874318_27874408_27874504_27875279_27875451_27876567_27876701_27877629_27877743_27878322_27878469_27878555
ENSMUST00000042477.13	chr11	+	1106	6	FSM	ENSMUSG00000078656.12	ENSMUST00000042477.13	1106	6	0	0	0	0	multi-exon	FALSE	canonical	3	1136	junction_3	45.4682306671372	8336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGCCTGTTACTACTGCTG	NA	False	NA	20	True	ATTAAA	-17	NA	101144532	101150375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149735
ENSMUST00000042493.10	chr1	-	1705	5	FSM	ENSMUSG00000042111.10	ENSMUST00000042493.10	1705	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	5.33853912601566	925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGCTCTCATTTTATTTT	7204	False	NA	1	True	AATAAA	-23	NA	34478753	34475750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_34476692_34476807_34476940_34477930_34478014_34478123_34478228_34478308
ENSMUST00000042497.14	chr19	-	1661	10	FSM	ENSMUSG00000037916.15	ENSMUST00000042497.14	1661	10	0	0	0	0	multi-exon	FALSE	canonical	3	1250	junction_6	107.070877644232	7548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAACTTTGCTTTTC	6426	False	NA	3	True	AATAAA	-30	NA	4062806	4057496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
ENSMUST00000042546.4	chr9	-	2653	13	FSM	ENSMUSG00000037949.9	ENSMUST00000042546.4	2653	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	6.44797556515911	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCAAATGTTTCAAGCTG	NA	False	NA	3	True	ATTAAA	-37	NA	122123489	122004939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_122005545_122030836_122030954_122080212_122080342_122082001_122082194_122086121_122086305_122087982_122088058_122088600_122088657_122090149_122090720_122092735_122092856_122100264_122100400_122101432_122101631_122104576_122104730_122123369
ENSMUST00000042556.11	chr10	-	3872	21	FSM	ENSMUSG00000032834.12	ENSMUST00000042556.11	3872	21	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_16	14.9260678009984	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTTTGTCTGTGTGTGG	NA	False	NA	-5	True	AATACA	-17	NA	78020983	78006742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014411_78014794_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78019891_78020005_78020904
ENSMUST00000042564.17	chr14	-	2573	9	FSM	ENSMUSG00000041028.17	ENSMUST00000042564.17	2573	9	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	1775.59757106587	8126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTATTGCTGTACTT	NA	False	NA	-18	True	AATAAA	-11	NA	36857096	36842780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36856921
ENSMUST00000042575.7	chr4	-	3856	3	FSM	ENSMUSG00000036822.7	ENSMUST00000042575.7	3856	3	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	19	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGTGCAACATTGATT	9561	False	NA	0	True	AATAAA	-28	NA	40269850	40259600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_40263082_40268303_40268502_40269673
ENSMUST00000042662.10	chr14	-	2240	3	FSM	ENSMUSG00000033186.10	ENSMUST00000042662.10	2240	3	0	0	0	0	multi-exon	FALSE	canonical	3	792	junction_1	24.5	1485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGTCCTTTTGATATAC	NA	False	NA	NA	False	AATAAA	-18	NA	99283556	99271979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_99273947_99277950_99278097_99283429
ENSMUST00000042675.9	chr4	+	1604	9	FSM	ENSMUSG00000028745.19	ENSMUST00000042675.9	1604	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	550.173836164534	6990	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAAAAAAATAAATAAAAA	NA	False	NA	-27	True	NA	NA	NA	138960693	139019094	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_138960789_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
ENSMUST00000042700.12	chr19	-	797	7	FSM	ENSMUSG00000038155.12	ENSMUST00000042700.12	797	7	0	0	0	0	multi-exon	FALSE	canonical	3	1174	junction_6	961.706469424706	22872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCCGTT	NA	False	NA	NA	False	AATAAA	-16	NA	4092263	4090284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092164
ENSMUST00000042702.7	chr15	+	1164	5	FSM	ENSMUSG00000039065.12	ENSMUST00000042702.7	1164	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	6.68954408012983	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAACCGTGACAAGGAGTG	115	False	NA	27	True	ATTAAA	-27	NA	31602263	31617681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_31602296_31606056_31606335_31608241_31608380_31609711_31609763_31617016
ENSMUST00000042706.3	chr4	+	1132	2	FSM	ENSMUSG00000037583.3	ENSMUST00000042706.3	1132	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTAGTTGCTTGTGGAA	NA	False	NA	NA	False	AATAAA	-17	NA	133280686	133283847	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_133281277_133283305
ENSMUST00000042753.14	chr5	-	2368	5	FSM	ENSMUSG00000040302.18	ENSMUST00000042753.14	2368	5	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_2	28.3813318926368	1106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGCTATCTGCGTGTC	1474	False	NA	-9	True	AATAAA	-21	NA	3646585	3633977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_3634808_3640222_3640804_3641669_3641816_3645254_3645446_3645965
ENSMUST00000042775.5	chr2	-	1014	2	FSM	ENSMUSG00000039873.5	ENSMUST00000042775.5	1014	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGGAGGGTCTCCTTGC	NA	False	NA	NA	False	AATAAA	-24	NA	164675376	164672651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_164672908_164674618
ENSMUST00000042790.5	chr9	-	773	2	FSM	ENSMUSG00000038086.5	ENSMUST00000042790.5	773	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTGCTGCTTCTGT	NA	False	NA	-7	True	AATAAA	-16	NA	50663593	50662377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_50663034_50663476
ENSMUST00000042834.4	chr13	-	1363	2	FSM	ENSMUSG00000038462.4	ENSMUST00000042834.4	1363	2	0	0	0	0	multi-exon	FALSE	canonical	3	2063	junction_1	0	3058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTATTATTTTGTTGAA	NA	False	NA	-2	True	ATTAAA	-19	NA	30729345	30724290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_30725325_30729016
ENSMUST00000042901.15	chr3	+	4316	24	FSM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	0	0	0	0	multi-exon	FALSE	canonical	3	521	junction_3	142.05353233605	930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTTTCCTGTTTTAT	NA	False	NA	20	True	TATAAA	-21	NA	68912070	68941956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
ENSMUST00000042974.15	chr6	+	1773	3	FSM	ENSMUSG00000035104.15	ENSMUST00000042974.15	1773	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	1.5	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGCTTCGTGTCTGTGTG	NA	False	NA	NA	False	AATAAA	-19	NA	82018603	82070080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_82018883_82048035_82048224_82068774
ENSMUST00000043045.10	chrX	+	1609	11	FSM	ENSMUSG00000039382.13	ENSMUST00000043045.10	1609	11	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	40.4807361593141	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGGGGCGTGCTTTCCCG	4006	False	NA	22	True	AATAAA	-35	NA	7588455	7594445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ENSMUST00000043074.14	chr19	+	508	5	FSM	ENSMUSG00000038274.14	ENSMUST00000043074.14	508	5	0	0	0	0	multi-exon	FALSE	canonical	3	1236	junction_1	5677.26170790109	233849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTCTTATGTTTTCTTC	1081	False	NA	1	True	AATAAA	-13	NA	6107972	6109546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6108032_6108275_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUST00000043087.15	chr15	-	1793	8	FSM	ENSMUSG00000035845.18	ENSMUST00000043087.15	1793	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	14.4193747210806	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGTGTCTTGTTGTTGGT	9277	False	NA	-1	True	AATAAA	-16	NA	88703488	88689447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_88690258_88690601_88690678_88690760_88690925_88698631_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
ENSMUST00000043098.9	chr6	-	1223	4	FSM	ENSMUSG00000036390.9	ENSMUST00000043098.9	1223	4	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	3.77123616632825	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATTTCTCAACGTGTGGT	NA	False	NA	-7	True	AATAAA	-19	NA	67014390	67012079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_67012757_67013661_67013900_67013993_67014096_67014184
ENSMUST00000043152.6	chr11	-	3877	19	FSM	ENSMUSG00000035575.12	ENSMUST00000043152.6	3877	19	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_5	33.8632416611651	867	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGAGAATGTTAATCTT	NA	False	NA	-14	True	NA	NA	NA	79853216	79824778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
ENSMUST00000043269.14	chr13	-	2676	16	FSM	ENSMUSG00000021546.19	ENSMUST00000043269.14	2676	16	0	0	0	0	multi-exon	FALSE	canonical	3	4513	junction_1	1087.93485507584	4160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	4765	False	NA	-23	True	AATAAA	-15	NA	58550316	58539052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUST00000043273.16	chr7	+	884	8	FSM	ENSMUSG00000078765.12	ENSMUST00000043273.16	884	8	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_1	81.3154602866678	3593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTGGTTTCCTTCCACC	NA	False	NA	36	True	AATAAA	-24	NA	30262745	30264790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUST00000043286.15	chr18	-	2591	10	FSM	ENSMUSG00000038425.19	ENSMUST00000043286.15	2591	10	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_9	76.3322820564839	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGGCTCTCACTGTAAGT	NA	False	NA	-16	True	AATAAA	-19	NA	70663505	70641754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70663258
ENSMUST00000043305.14	chr4	-	4191	16	FSM	ENSMUSG00000037622.15	ENSMUST00000043305.14	4191	16	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_15	124.591599502802	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGGCATTTGTTGGGGC	4264	False	NA	1	True	ATTAAA	-22	NA	133066635	133019769	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_133021697_133022508_133022702_133023726_133023905_133024730_133024967_133027871_133028046_133029029_133029139_133029693_133029767_133030861_133030978_133031461_133031557_133033134_133033318_133036059_133036248_133040617_133040730_133041070_133041118_133049482_133049567_133051138_133051286_133066306
ENSMUST00000043333.9	chr6	-	1708	10	FSM	ENSMUSG00000048930.13	ENSMUST00000043333.9	1708	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	139.396317502771	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATAAAAAAACCACCCGC	NA	False	NA	18	True	AATAAA	-36	NA	113354337	113343615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351796_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354276
ENSMUST00000043342.10	chr3	+	1576	8	FSM	ENSMUSG00000033554.18	ENSMUST00000043342.10	1576	8	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_6	12.9331089117215	2416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGCAGTCAGCGACTGAG	7758	False	NA	NA	False	TTTAAA	-6	NA	115681831	115722981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157
ENSMUST00000043396.15	chr12	-	2674	3	FSM	ENSMUSG00000037169.16	ENSMUST00000043396.15	2674	3	0	0	0	0	multi-exon	FALSE	canonical	3	794	junction_2	66.5	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGATGTTTTCCTTCCTAG	NA	False	NA	-18	True	AATAAA	-20	NA	12991915	12986093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_12987612_12989610_12990488_12991636
ENSMUST00000043419.10	chr11	-	1437	7	FSM	ENSMUSG00000078812.11	ENSMUST00000043419.10	1437	7	0	0	0	0	multi-exon	FALSE	canonical	3	627	junction_6	9644.56352477049	39362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9941	False	NA	-15	True	AATAAA	-20	NA	69812212	69807545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811988
ENSMUST00000043429.12	chr4	-	1932	10	FSM	ENSMUSG00000032897.18	ENSMUST00000043429.12	1932	10	0	0	0	0	multi-exon	TRUE	canonical	3	393	junction_8	23.5424491839793	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	-1	True	AATAAA	-20	NA	120682903	120614634	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682726
ENSMUST00000043498.9	chr18	-	2032	15	FSM	ENSMUSG00000024454.17	ENSMUST00000043498.9	2032	15	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_2	40.0044002681746	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTATTAGTTAGGCCATG	NA	False	NA	-5	True	AATAAA	-21	NA	38088069	38070024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_38070737_38074005_38074164_38074431_38074512_38074760_38074820_38074930_38075021_38076508_38076574_38076730_38076805_38077181_38077263_38077944_38078079_38078392_38078449_38078563_38078621_38078746_38078829_38085523_38085667_38087734_38087818_38087911
ENSMUST00000043517.8	chr7	-	2905	8	FSM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_4	10.2359909243845	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCATTGTCCGAGCCTTTG	9931	False	NA	-1	True	NA	NA	NA	19655085	19637502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19639118_19639703_19639739_19643105_19643229_19644529_19644682_19648662_19648790_19650798_19651096_19652486_19652835_19654877
ENSMUST00000043520.5	chr8	+	2012	10	FSM	ENSMUSG00000038365.9	ENSMUST00000043520.5	2012	10	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_9	11.3572731903828	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAATTTTTCTGCAACAAT	NA	False	NA	14	True	AATAAA	-20	NA	13957802	13990522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13973924_13974018_13976947_13977042_13979255_13979441_13981181_13981365_13985145_13985290_13989562
ENSMUST00000043552.17	chr13	-	1547	7	FSM	ENSMUSG00000060147.16	ENSMUST00000043552.17	1547	7	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_6	98.4119742036845	2698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTCTGCCTCACTGG	8257	False	NA	2	True	AATAAA	-28	NA	34120181	34101900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119904
ENSMUST00000043584.5	chr2	-	1598	4	FSM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	0	0	0	0	multi-exon	FALSE	canonical	3	1343	junction_2	25.8499946271217	8587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCGCCTGTCCAATTCCT	NA	False	NA	-24	True	ATTAAA	-18	NA	25114714	25112171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25113381_25113945_25114057_25114135_25114245_25114545
ENSMUST00000043627.8	chr11	+	1316	5	FSM	ENSMUSG00000039640.8	ENSMUST00000043627.8	1316	5	0	0	0	0	multi-exon	FALSE	canonical	3	1076	junction_2	33.5186515241887	6646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAAGTGTAACCCTGGCC	8955	False	NA	NA	False	NA	NA	NA	120375438	120379891	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120375595_120376068_120376256_120376481_120376569_120378922_120379061_120379143
ENSMUST00000043680.9	chr11	+	1802	11	FSM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	0	0	0	0	multi-exon	TRUE	canonical	3	373	junction_8	104.461715475096	1672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1230	False	NA	16	True	AATAAA	-19	NA	101010763	101017245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
ENSMUST00000043735.8	chr10	+	3535	28	FSM	ENSMUSG00000040675.18	ENSMUST00000043735.8	3535	28	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_27	66.4418431300526	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTCAGCTAGTAAAGCCA	NA	False	NA	14	True	AATAAA	-19	NA	3923143	4106111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105649
ENSMUST00000043757.15	chr17	-	3161	23	FSM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	0	0	0	0	multi-exon	FALSE	canonical	3	801	junction_12	70.1887066803097	3346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGGGGTGCT	NA	False	NA	-12	True	AATAAA	-18	NA	36280653	36267710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
ENSMUST00000043760.15	chr5	+	1660	11	FSM	ENSMUSG00000041939.15	ENSMUST00000043760.15	1660	11	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_10	13.5410487038486	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGGCCCTGTGGGAAG	NA	False	NA	NA	False	AATAAA	-20	NA	114582366	114598652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
ENSMUST00000043794.11	chr5	+	2383	13	FSM	ENSMUSG00000063646.19	ENSMUST00000043794.11	2383	13	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	48.883080463035	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	NA	False	NA	17	True	AATAAA	-20	NA	37208200	37282643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_37208320_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
ENSMUST00000043814.5	chr10	-	3282	23	FSM	ENSMUSG00000038417.5	ENSMUST00000043814.5	3282	23	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_19	28.6394298502739	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGTTTTGCTTCTGACT	NA	False	NA	-25	True	AATAAA	-17	NA	41179256	41064167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_41064696_41096894_41096982_41102917_41103001_41104102_41104299_41106002_41106087_41108102_41108251_41109547_41109607_41116500_41116640_41127712_41127880_41129635_41129785_41130839_41130886_41132416_41132534_41134010_41134145_41139064_41139163_41139880_41140044_41141381_41141483_41143682_41143812_41146294_41146444_41148953_41149005_41153353_41153511_41161285_41161410_41161596_41161696_41178982
ENSMUST00000043822.8	chr7	-	1662	12	FSM	ENSMUSG00000040525.14	ENSMUST00000043822.8	1662	12	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	3.71283233757493	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCCCGTGTGTGACAGAG	NA	False	NA	1	True	AATAAA	-20	NA	19530734	19513642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19513722_19514697_19514773_19514894_19515002_19518727_19518806_19519162_19519325_19520107_19520240_19522893_19522982_19524324_19524463_19526032_19526155_19526433_19526591_19526733_19526881_19530357
ENSMUST00000043839.5	chr1	+	2518	10	FSM	ENSMUSG00000038235.5	ENSMUST00000043839.5	2518	10	0	0	0	0	multi-exon	FALSE	canonical	1	67	junction_8	70.6616000978966	806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTATGTTTTTTTTT	NA	False	NA	23	True	ATTAAA	-23	NA	171265102	171292171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_171265270_171287930_171288000_171288105_171288214_171288396_171288544_171288768_171288975_171289130_171289234_171289372_171289481_171290170_171290184_171290456_171290509_171290626
ENSMUST00000043867.11	chr3	+	552	4	FSM	ENSMUSG00000039221.11	ENSMUST00000043867.11	552	4	0	0	0	0	multi-exon	FALSE	canonical	3	2038	junction_1	2670.46824857864	52262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACATGTATGGTTCA	NA	False	NA	10	True	AATAAA	-15	NA	28859584	28861564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_28859693_28860648_28860742_28860885_28861008_28861335
ENSMUST00000043898.8	chr7	-	708	4	FSM	ENSMUSG00000036835.8	ENSMUST00000043898.8	708	4	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_3	125.517595048131	10927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGAGTTCTTGGGATCTT	1290	False	NA	-5	True	AATAAA	-17	NA	30262666	30261289	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30261560_30261748_30261854_30262220_30262364_30262476
ENSMUST00000043907.14	chr17	+	918	3	FSM	ENSMUSG00000038880.14	ENSMUST00000043907.14	918	3	0	0	0	0	multi-exon	FALSE	canonical	3	645	junction_1	12	4625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGTGGTTTCATTACA	NA	False	NA	16	True	AATAAA	-16	NA	25114089	25115263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25114463_25114635_25114679_25114761
ENSMUST00000043911.8	chr9	+	1683	8	FSM	ENSMUSG00000038884.15	ENSMUST00000043911.8	1683	8	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_6	22.3469853694417	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTAATAGCCTTAATTCC	NA	False	NA	19	True	AATAAA	-28	NA	20779937	20785603	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_20780233_20780625_20780750_20780899_20780950_20782492_20782532_20782671_20782822_20784163_20784268_20784405_20784561_20784837
ENSMUST00000043914.8	chr14	+	2674	17	FSM	ENSMUSG00000021975.10	ENSMUST00000043914.8	2674	17	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_12	28.2795752266543	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCCAGTTCTATTGCACT	NA	False	NA	17	True	AATAAA	-17	NA	65187493	65277281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_65187817_65217570_65217699_65223751_65223813_65227980_65228044_65230422_65230563_65232430_65232518_65244694_65244816_65245439_65245575_65253978_65254091_65257764_65257946_65263853_65263915_65266334_65266507_65269668_65269794_65271376_65271545_65273846_65273946_65274794_65274933_65276721
ENSMUST00000043929.11	chr18	+	1618	11	FSM	ENSMUSG00000038903.14	ENSMUST00000043929.11	1618	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	8.64869932417586	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCATGTCCTTCCA	NA	False	NA	3	True	AATAAA	-14	NA	70058536	70102555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_70058692_70071912_70072042_70073170_70073258_70076798_70076934_70079494_70079621_70080121_70080251_70089052_70089136_70093471_70093578_70094530_70094615_70099860_70099938_70102048
ENSMUST00000043931.9	chr11	-	625	6	FSM	ENSMUSG00000034566.11	ENSMUST00000043931.9	625	6	0	0	0	0	multi-exon	FALSE	canonical	3	1974	junction_5	551.930285452792	57627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310788	115306514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115310717
ENSMUST00000043937.9	chr3	-	1067	4	FSM	ENSMUSG00000041084.9	ENSMUST00000043937.9	1067	4	0	0	0	0	multi-exon	FALSE	canonical	3	1781	junction_1	135.7063823931	14314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTGGACTTTTTGTTGT	NA	False	NA	1	True	AATAAA	-24	NA	130503093	130489560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_130490128_130496964_130497163_130499598_130499693_130502885
ENSMUST00000043962.9	chr8	+	2301	18	FSM	ENSMUSG00000038416.16	ENSMUST00000043962.9	2301	18	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_10	60.600055957127	360	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCCAAGCTGGTAGAGTG	NA	False	NA	17	True	AATAAA	-24	NA	13807675	13831938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_13807855_13808997_13809053_13809139_13809238_13810529_13810569_13810976_13811118_13812850_13813011_13813819_13813912_13814568_13814703_13816417_13816498_13817537_13817588_13818560_13818635_13819376_13819503_13821297_13821451_13823340_13823405_13825707_13825770_13827471_13827608_13829227_13829319_13831371
ENSMUST00000043975.11	chr7	-	998	9	FSM	ENSMUSG00000036845.13	ENSMUST00000043975.11	998	9	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_2	22.8363744933385	884	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATCTCAAGTGCATTTA	4885	False	NA	-6	True	NA	NA	NA	30259071	30254865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257384_30258866
ENSMUST00000044007.3	chr11	-	813	2	FSM	ENSMUSG00000039670.3	ENSMUST00000044007.3	813	2	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGCAGGGGCTTTTGTGT	959	False	NA	-6	True	AATAAA	-18	NA	120348894	120347431	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120347989_120348638
ENSMUST00000044011.12	chr2	+	1658	5	FSM	ENSMUSG00000032966.15	ENSMUST00000044011.12	1658	5	0	0	0	0	multi-exon	FALSE	canonical	3	2063	junction_1	209.807501057517	4513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTGTCATGGAGGTTGC	NA	False	NA	25	True	AATAAA	-26	NA	151384402	151403612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_151384665_151384737_151384786_151399305_151399419_151401377_151401541_151402540
ENSMUST00000044038.10	chr2	-	1876	13	FSM	ENSMUSG00000039648.15	ENSMUST00000044038.10	1876	13	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_12	20.7811011899434	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTTCTCTCTTCCTTT	NA	False	NA	-3	True	AATAAA	-25	NA	30095859	30075135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30095644
ENSMUST00000044051.6	chr9	+	518	2	FSM	ENSMUSG00000039016.6	ENSMUST00000044051.6	518	2	0	0	0	0	multi-exon	FALSE	canonical	3	1341	junction_1	0	18971	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGTTCTTCTAAATCCC	8813	False	NA	21	True	AATAAA	-15	NA	50515209	50516620	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_50515340_50516232
ENSMUST00000044068.10	chr16	+	4178	17	FSM	ENSMUSG00000039456.11	ENSMUST00000044068.10	4178	17	0	0	0	0	multi-exon	TRUE	non_canonical	1	193	junction_4	108.324454764379	497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGGTAACTGAAAGTTA	974	False	NA	15	True	AATAAA	-26	NA	93629008	93672960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
ENSMUST00000044103.6	chr16	+	805	3	FSM	ENSMUSG00000039209.13	ENSMUST00000044103.6	805	3	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_1	5	6687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAATTGCTCTCTGGTCCT	NA	False	NA	68	True	NA	NA	NA	9988091	9992775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_9988189_9988278_9988356_9992144
ENSMUST00000044106.6	chr8	-	1581	7	FSM	ENSMUSG00000039067.6	ENSMUST00000044106.6	1581	7	0	0	0	0	multi-exon	FALSE	canonical	3	2367	junction_5	170.70409745782	19583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGTGTCCTAGTGGTT	NA	False	NA	-6	True	ATTAAA	-14	NA	108315096	108307012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
ENSMUST00000044111.10	chr7	+	995	6	FSM	ENSMUSG00000038387.10	ENSMUST00000044111.10	995	6	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_4	17.1860408471527	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGATGCTTTTTATTTGA	NA	False	NA	9	True	AATAAA	-17	NA	44667384	44671071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44667593_44669523_44669612_44669726_44669830_44669913_44670023_44670510_44670630_44670703
ENSMUST00000044143.6	chr19	-	745	2	FSM	ENSMUSG00000039097.6	ENSMUST00000044143.6	745	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATATGGATTTGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	29312070	29309106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_29309567_29311785
ENSMUST00000044148.3	chr4	-	3021	2	FSM	ENSMUSG00000039740.7	ENSMUST00000044148.3	3021	2	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	0	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCAGTTTATGGTTGCG	-17	True	NA	-2	True	AATAAA	-15	NA	47474333	47469832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_47472459_47473938
ENSMUST00000044200.11	chr6	+	2597	16	FSM	ENSMUSG00000038279.11	ENSMUST00000044200.11	2597	16	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	206.283558885983	626	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5437	False	NA	25	True	AATATA	-17	NA	125108871	125121716	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
ENSMUST00000044220.11	chr9	-	1169	4	FSM	ENSMUSG00000039163.11	ENSMUST00000044220.11	1169	4	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	9.03081145609604	3306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGGAAGGCAAGATTTAAC	NA	False	NA	NA	False	ATTAAA	-17	NA	117979245	117893589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_117894417_117904189_117904281_117944407_117944498_117979084
ENSMUST00000044252.7	chr17	-	1427	7	FSM	ENSMUSG00000039183.7	ENSMUST00000044252.7	1427	7	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_4	56.4111888034831	3035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAAGGTGTCTGTCTTGT	NA	False	NA	-6	True	AGTAAA	-24	NA	25105322	25101585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105252
ENSMUST00000044355.11	chr7	-	736	6	FSM	ENSMUSG00000041571.11	ENSMUST00000044355.11	736	6	0	0	0	0	multi-exon	FALSE	canonical	3	1985	junction_1	35.4028247460566	9870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGATGTTTATTTTGGCT	NA	False	NA	-11	True	AATAAA	-21	NA	15656327	15651132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_15651465_15653772_15653872_15653967_15654043_15654229_15654284_15654373_15654399_15656176
ENSMUST00000044369.13	chr1	+	2049	14	FSM	ENSMUSG00000033793.13	ENSMUST00000044369.13	2049	14	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_7	59.3277926628703	1498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGGTGATGATGAGAAGT	NA	False	NA	98	True	AATAAA	-37	NA	5153302	5232752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5171292_5171347_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
ENSMUST00000044478.7	chr1	+	1830	14	FSM	ENSMUSG00000041426.13	ENSMUST00000044478.7	1830	14	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_5	8.39836557781919	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGTTCTGTCTCCAGAA	NA	False	NA	NA	False	AAAAAG	-12	NA	52884204	52960145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_52884304_52892826_52892870_52899186_52899325_52901426_52901512_52904707_52904789_52908064_52908118_52924261_52924341_52940346_52940493_52942005_52942093_52943800_52943860_52944529_52944612_52952889_52953010_52955795_52955830_52959421
ENSMUST00000044509.7	chrX	-	2696	7	FSM	ENSMUSG00000041096.14	ENSMUST00000044509.7	2696	7	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_2	16.4189930669738	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCTCTTGGAGTCTTTTG	NA	False	NA	-4	True	AATAAA	-17	NA	151125421	151119850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_151120562_151121720_151122389_151122628_151122724_151122857_151123004_151123081_151123194_151123298_151123377_151124535
ENSMUST00000044524.16	chr15	+	1555	4	FSM	ENSMUSG00000039168.16	ENSMUST00000044524.16	1555	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	1.69967317119759	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTCTTACGGTTCAG	-9	True	NA	21	True	AATAAA	-21	NA	31224459	31274487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_31224730_31235918_31236016_31272534_31272578_31273342
ENSMUST00000044567.4	chr3	+	1471	10	FSM	ENSMUSG00000036632.10	ENSMUST00000044567.4	1471	10	0	0	0	0	multi-exon	FALSE	canonical	3	432	junction_5	39.5777091521022	3328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTGTCCTCTTCCTTG	NA	False	NA	18	True	AATAAA	-22	NA	54642959	54657216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_54643071_54646202_54646375_54646682_54646730_54648799_54648869_54649567_54649661_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656115_54656649
ENSMUST00000044579.12	chr5	-	1323	8	FSM	ENSMUSG00000033467.13	ENSMUST00000044579.12	1323	8	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_7	229.794229159703	3691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGCGGCCAGCCATCAT	NA	False	NA	-11	True	NA	NA	NA	109706859	109702578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705481_109706670
ENSMUST00000044675.5	chr2	+	1373	8	FSM	ENSMUSG00000098789.8	ENSMUST00000044675.5	1373	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_5	32.3128836376389	984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857963	119863075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862055_119862133_119862321_119862482_119862594
ENSMUST00000044681.7	chr6	+	1442	3	FSM	ENSMUSG00000035199.7	ENSMUST00000044681.7	1442	3	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_2	50	1673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGTCTATATGGCACAT	8448	False	NA	10	True	AATAAA	-21	NA	97187649	97210276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_97187958_97206497_97206716_97209360
ENSMUST00000044721.13	chr11	+	4008	22	FSM	ENSMUSG00000019302.17	ENSMUST00000044721.13	4008	22	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_19	48.1567734584863	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTCTCTGAGTGTG	NA	False	NA	17	True	AATAAA	-22	NA	100900277	100954545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100939243_100939352_100940284_100940303_100945851_100945970_100946259_100946432_100953137
ENSMUST00000044725.9	chr9	-	1668	3	FSM	ENSMUSG00000039461.13	ENSMUST00000044725.9	1668	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	14.5	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGGTGTGGTTATTCAA	7285	False	NA	-2	True	ATTAAA	-13	NA	108183189	108180156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_108181453_108182524_108182628_108182920
ENSMUST00000044746.5	chr5	-	1376	2	FSM	ENSMUSG00000040429.7	ENSMUST00000044746.5	1376	2	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	0	505	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTATTTTGTATGTATTT	NA	False	NA	NA	False	AATAAA	-23	NA	3943933	3940580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_3941898_3943874
ENSMUST00000044825.5	chr2	+	1166	11	FSM	ENSMUSG00000027384.7	ENSMUST00000044825.5	1166	11	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_10	17.7042367810646	2409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAGTTTGAAGCAAGGTG	NA	False	NA	10	True	AATAAA	-21	NA	140012568	140045609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_140012854_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
ENSMUST00000044923.15	chr12	-	2850	9	FSM	ENSMUSG00000041645.15	ENSMUST00000044923.15	2850	9	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_8	40.7106788815908	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGAGGGTGTTGCAGTG	NA	False	NA	-12	True	ATTAAA	-20	NA	103392078	103374240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103392037
ENSMUST00000044972.11	chr5	-	1447	9	FSM	ENSMUSG00000040013.12	ENSMUST00000044972.11	1447	9	0	0	0	0	multi-exon	FALSE	canonical	3	793	junction_1	94.8445273856114	3441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCAGTACAATTCATTG	NA	False	NA	-1	True	AATAAA	-20	NA	135378898	135320557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_135320966_135366468_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378788
ENSMUST00000045011.9	chr9	-	2572	13	FSM	ENSMUSG00000025646.10	ENSMUST00000045011.9	2572	13	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_2	14.834971819619	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTTTCCTGAGTCCGA	NA	False	NA	1	True	ATTAAA	-26	NA	108903192	108888814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_108888977_108889330_108889581_108889696_108889778_108890177_108890270_108890599_108890737_108894195_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
ENSMUST00000045028.15	chr1	-	613	3	FSM	ENSMUSG00000067299.12	ENSMUST00000045028.15	613	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	4.5	826	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAAAATATTTTCTGTGT	7620	False	NA	-34	True	NA	NA	NA	65102611	65101030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_65101342_65102217_65102461_65102552
ENSMUST00000045035.12	chr7	-	432	4	FSM	ENSMUSG00000040564.15	ENSMUST00000045035.12	432	4	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_3	145.90027035235	9087	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGAAGTGCTTTGG	NA	False	NA	-4	True	AATAAA	-19	NA	19426585	19423405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19423562_19425812_19425961_19426335_19426412_19426533
ENSMUST00000045078.13	chr4	+	1280	9	FSM	ENSMUSG00000035637.15	ENSMUST00000045078.13	1280	9	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_3	33.5326333591622	1765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTTGTGTTTGCTGAC	-31	True	NA	13	True	NA	NA	NA	44981394	44990734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_44981535_44982878_44983010_44983873_44983947_44984429_44984547_44985306_44985396_44986285_44986391_44987215_44987352_44988919_44989051_44990376
ENSMUST00000045138.6	chr1	-	2538	5	FSM	ENSMUSG00000040124.6	ENSMUST00000045138.6	2538	5	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	10.1827059272082	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATGGTCTGTCATTTAA	NA	False	NA	-1	True	AATAAA	-18	NA	163231238	163212476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_163214267_163219978_163220120_163222159_163222262_163224380_163224739_163231091
ENSMUST00000045173.10	chr13	+	2714	17	FSM	ENSMUSG00000035493.11	ENSMUST00000045173.10	2714	17	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	6.48917367620871	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTGCTAGCTGCGTG	9425	False	NA	NA	False	AATAAA	-16	NA	56757398	56787171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_56757594_56762052_56762152_56771372_56771438_56773012_56773174_56773462_56773628_56773846_56773994_56775726_56775869_56777430_56777644_56778356_56778495_56779042_56779189_56779862_56780000_56780671_56780803_56783378_56783504_56784378_56784482_56784950_56785031_56785833_56785859_56786529
ENSMUST00000045246.8	chr2	+	3113	22	FSM	ENSMUSG00000026785.15	ENSMUST00000045246.8	3113	22	0	0	0	0	multi-exon	TRUE	canonical	2	22	junction_1	27.5708117374869	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGGGGTTGTGTAGTGTC	2218	False	NA	21	True	AATAAA	-23	NA	29968595	29981031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29968803_29969545_29969775_29969937_29970084_29970586_29970699_29970767_29970896_29971064_29971249_29972827_29972975_29973052_29973163_29973250_29973395_29974702_29974779_29974861_29975025_29975194_29975292_29975371_29975440_29976448_29976513_29976643_29976736_29977036_29977214_29978531_29978595_29978707_29978785_29979850_29979994_29980079_29980188_29980342_29980424_29980534
ENSMUST00000045356.9	chr15	+	835	4	FSM	ENSMUSG00000041841.9	ENSMUST00000045356.9	835	4	0	0	0	0	multi-exon	FALSE	canonical	3	15185	junction_3	3886.71174930972	217004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTCATAGTCCGTGTAG	2248	False	NA	NA	False	NA	NA	NA	5146126	5148622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_5146167_5146768_5146905_5147100_5147186_5148048
ENSMUST00000045388.8	chr1	-	1578	5	FSM	ENSMUSG00000039246.9	ENSMUST00000045388.8	1578	5	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_3	16.3477827242718	1042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAGTGTATAATAATA	NA	False	NA	NA	False	AATAAA	-26	NA	185849507	185819927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_185820966_185821640_185821757_185832389_185832560_185846460_185846561_185849353
ENSMUST00000045396.9	chr19	-	3676	26	FSM	ENSMUSG00000039901.11	ENSMUST00000045396.9	3676	26	0	0	0	0	multi-exon	TRUE	canonical	3	159	junction_20	17.3221707646588	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTGTCTCGTTAGTGTC	6647	False	NA	-3	True	ATTAAA	-17	NA	45986927	45805802	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_45807418_45808712_45808830_45834546_45834626_45874390_45874467_45879646_45879774_45880504_45880588_45910055_45910145_45920789_45920851_45922224_45922295_45924800_45924867_45928883_45928943_45934440_45934543_45939100_45939195_45941063_45941140_45941862_45941910_45945118_45945180_45946845_45946890_45948751_45948809_45953602_45953690_45953800_45953876_45954680_45954774_45961261_45961370_45963405_45963553_45963657_45963715_45967038_45967152_45986854
ENSMUST00000045454.9	chr10	-	2394	6	FSM	ENSMUSG00000032977.10	ENSMUST00000045454.9	2394	6	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_3	11.7881296226331	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCAGTCCCCTGGCTTTC	NA	False	NA	-7	True	AATAAA	-26	NA	77351619	77322494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_77324308_77325831_77325901_77333196_77333348_77339679_77339749_77350139_77350249_77351436
ENSMUST00000045542.13	chr4	+	3033	11	FSM	ENSMUSG00000033985.18	ENSMUST00000045542.13	3033	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_7	8.01810451416044	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGAAATATGATTTTGC	NA	False	NA	3	True	ATTAAA	-16	NA	116578144	116661439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_116578454_116598812_116599116_116608301_116608424_116628996_116629046_116649284_116649432_116657729_116657813_116658356_116658442_116658645_116658730_116658916_116659004_116659420_116659539_116659793
ENSMUST00000045602.9	chr17	-	732	4	FSM	ENSMUSG00000040048.15	ENSMUST00000045602.9	732	4	0	0	0	0	multi-exon	FALSE	canonical	3	2001	junction_1	127.206743357243	22531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTCTGGTGACTAAA	NA	False	NA	NA	False	AATAAA	-22	NA	24943452	24941033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24941195_24941354_24941495_24941628_24941768_24943160
ENSMUST00000045604.4	chr2	-	776	2	FSM	ENSMUSG00000036850.5	ENSMUST00000045604.4	776	2	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	0	4557	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGTTTTGAATCAAGT	NA	False	NA	-3	True	ATTAAA	-21	NA	24865110	24864128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_24864694_24864899
ENSMUST00000045607.12	chr4	+	2955	18	FSM	ENSMUSG00000035683.14	ENSMUST00000045607.12	2955	18	0	0	0	0	multi-exon	FALSE	canonical	2	288	junction_12	49.6985375708199	1435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATAGCACTGTTTCT	NA	False	NA	NA	False	ATTAAA	-11	NA	44300875	44364675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
ENSMUST00000045628.15	chr10	-	1898	8	FSM	ENSMUSG00000035781.15	ENSMUST00000045628.15	1898	8	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_7	14.1608831731957	433	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCCCCGTGTTTGTC	9682	False	NA	-8	True	AATAAA	-15	NA	79752840	79745885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_79746974_79747775_79747832_79747908_79747995_79748229_79748316_79748482_79748604_79749058_79749181_79749390_79749546_79752656
ENSMUST00000045633.6	chr11	+	4358	26	FSM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	0	0	0	0	multi-exon	FALSE	canonical	3	2354	junction_12	204.057066527969	1022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACACTTGGACCTGGTTC	NA	False	NA	19	True	AATAAA	-32	NA	72332180	72342594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
ENSMUST00000045693.8	chr6	+	2486	13	FSM	ENSMUSG00000033706.14	ENSMUST00000045693.8	2486	13	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_7	60.725246442938	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAACAATGCCTTGTGGGG	NA	False	NA	28	True	AATAAA	-22	NA	85408970	85423417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_85409083_85415089_85415199_85415731_85415872_85416638_85416758_85417087_85417158_85417621_85417727_85418541_85418605_85418719_85418791_85419092_85419200_85419580_85419638_85421224_85421320_85421899_85421971_85422050
ENSMUST00000045694.14	chr1	+	1513	2	FSM	ENSMUSG00000041396.14	ENSMUST00000045694.14	1513	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGACTGTTCAATTTCT	NA	False	NA	9	True	AATAAA	-16	NA	163822457	163824812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_163822641_163823482
ENSMUST00000045697.12	chr11	+	940	4	FSM	ENSMUSG00000036860.15	ENSMUST00000045697.12	940	4	0	0	0	0	multi-exon	FALSE	canonical	3	484	junction_1	41.3467720088952	4369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACACAGCTTCAGACCTCT	NA	False	NA	1	True	NA	NA	NA	59093317	59096960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_59093486_59094997_59095082_59095381_59095584_59096474
ENSMUST00000045720.14	chr7	+	3058	4	FSM	ENSMUSG00000074165.11	ENSMUST00000045720.14	3058	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	14.6363322667334	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAGAATATGTTTTCATT	NA	False	NA	53	True	NA	NA	NA	41282987	41300355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_41283119_41296914_41297042_41297242_41297304_41297616
ENSMUST00000045744.7	chr10	-	3024	21	FSM	ENSMUSG00000034917.9	ENSMUST00000045744.7	3024	21	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_20	26.4920271025077	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAATACAAGACTGAGG	7297	False	NA	8	True	AATAAA	-27	NA	81127101	81109040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_81109224_81109482_81109530_81109636_81109904_81110216_81110318_81110413_81110625_81111007_81111079_81112101_81112198_81113029_81113245_81113652_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938_81117267_81118771_81118875_81119329_81119440_81119516_81119574_81126881
ENSMUST00000045748.7	chrX	-	2115	12	FSM	ENSMUSG00000035232.9	ENSMUST00000045748.7	2115	12	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_5	23.1352473386711	552	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACACCTTGGTTTGAAAGA	NA	False	NA	-2	True	ATTAAA	-33	NA	92875807	92808212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_92808862_92812494_92812635_92820914_92821029_92825072_92825184_92825751_92825854_92827385_92827463_92832499_92832578_92843719_92843810_92845814_92846000_92852476_92852549_92857532_92857675_92875452
ENSMUST00000045756.14	chr3	+	685	3	FSM	ENSMUSG00000041959.15	ENSMUST00000045756.14	685	3	0	0	0	0	multi-exon	TRUE	canonical	3	427	junction_2	41.5	3465	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGACGTAGAGTGTTTC	NA	False	NA	20	True	AATAAA	-24	NA	93462386	93471950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_93462519_93468250_93468403_93471549
ENSMUST00000045766.8	chr15	-	2126	18	FSM	ENSMUSG00000039828.8	ENSMUST00000045766.8	2126	18	0	0	0	0	multi-exon	TRUE	canonical	3	158	junction_1	88.3053055575902	743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGATTTTGTCCTTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	8128675	7902542	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_7902735_7913761_7913925_7915043_7915161_7916809_7916890_7918556_7918658_7949967_7950107_7951549_7951635_7953688_7953789_8006448_8006624_8049069_8049147_8065211_8065366_8072191_8072326_8075912_8075973_8108643_8108849_8111945_8112067_8123159_8123244_8128439_8128506_8128602
ENSMUST00000045791.11	chr9	+	2340	9	FSM	ENSMUSG00000040188.11	ENSMUST00000045791.11	2340	9	0	0	0	0	multi-exon	TRUE	canonical	3	243	junction_4	15.3927742788621	486	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGGCCCTGATGTCAAT	NA	False	NA	13	True	AATAAA	-15	NA	57468225	57496078	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_57468394_57484475_57484545_57484921_57485021_57486715_57486834_57488066_57488196_57488772_57488933_57490134_57490237_57494362_57494484_57494704
ENSMUST00000045807.14	chr11	+	3389	15	FSM	ENSMUSG00000038335.14	ENSMUST00000045807.14	3389	15	0	0	0	0	multi-exon	FALSE	canonical	3	655	junction_8	75.3882467968452	1934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGTCTGGATTCTAGTA	NA	False	NA	26	True	AATAAA	-18	NA	74788903	74800168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
ENSMUST00000045855.9	chr6	-	1058	4	FSM	ENSMUSG00000042770.9	ENSMUST00000045855.9	1058	4	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_1	18.8738502225228	9504	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGACAGTTTTAAATTATT	NA	False	NA	-29	True	AATACA	-20	NA	135145213	135114519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_135115062_135129818_135130000_135132148_135132288_135145017
ENSMUST00000045884.17	chr8	-	2078	12	FSM	ENSMUSG00000040263.17	ENSMUST00000045884.17	2078	12	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	29.2453287927892	545	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGCAAGATGACAATGTGC	436	False	NA	-5	True	AATAAA	-37	NA	122556308	122523051	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_122523483_122523656_122523768_122524572_122524976_122526186_122526396_122527877_122527954_122531685_122531846_122533244_122533338_122540445_122540583_122546860_122546960_122548018_122548098_122548520_122548613_122556120
ENSMUST00000045887.9	chr10	-	1084	3	FSM	ENSMUSG00000037710.9	ENSMUST00000045887.9	1084	3	0	0	0	0	multi-exon	FALSE	canonical	3	1606	junction_1	82	17217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTGGCTCTGTAACGG	1253	False	NA	7	True	AATAAA	-27	NA	71180784	71166309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_71166957_71172043_71172250_71180553
ENSMUST00000045897.15	chr1	+	1216	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	0	0	0	0	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	95385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTTCTGTGTGTA	NA	False	NA	57	True	NA	NA	NA	86454447	86458434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
ENSMUST00000045905.15	chr14	-	3293	15	FSM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_11	31.8875575504085	1829	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTCTTTTGTACTTCTG	NA	False	NA	-5	True	AATAAA	-20	NA	45767575	45696251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_45697481_45699223_45699366_45699572_45699698_45702180_45702403_45702540_45702648_45704794_45704920_45705959_45706010_45706696_45706832_45710228_45710337_45713029_45713133_45713344_45713571_45719888_45720024_45741953_45742188_45766881_45767049_45767390
ENSMUST00000045909.8	chr13	+	1894	2	FSM	ENSMUSG00000041995.9	ENSMUST00000045909.8	1894	2	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	0	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGGTGTTCTGCTTGCATG	NA	False	NA	38	True	NA	NA	NA	95461744	95474349	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_95461853_95472563
ENSMUST00000045918.15	chr16	-	1451	9	FSM	ENSMUSG00000033809.16	ENSMUST00000045918.15	1451	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	107.475578621378	1659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTAGTGGTTGCTCGTGCCT	NA	False	NA	13	True	AATAAA	-36	NA	20429518	20424200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20427736_20427837_20429292
ENSMUST00000045931.12	chr12	+	2597	12	FSM	ENSMUSG00000042472.12	ENSMUST00000045931.12	2597	12	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_3	18.7929123266993	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTTTGGCTCTTGTTTT	1583	False	NA	11	True	AATAAA	-16	NA	84363625	84390497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
ENSMUST00000045956.14	chr17	+	2748	19	FSM	ENSMUSG00000040312.15	ENSMUST00000045956.14	2748	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	38.8088461978693	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTGCGATTTCCCCTGA	4508	False	NA	30	True	AATAAA	-32	NA	35828072	35841912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35828127_35828687_35828837_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
ENSMUST00000045959.8	chr2	+	1637	15	FSM	ENSMUSG00000038572.8	ENSMUST00000045959.8	1637	15	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	7.50951777032701	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTGTCTGAGTTTGCTG	NA	False	NA	5	True	AATAAA	-15	NA	154065661	154082822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_154065814_154066857_154067075_154069010_154069116_154069982_154070115_154070773_154070859_154070950_154071015_154071386_154071473_154072092_154072276_154074753_154074808_154075108_154075259_154076410_154076479_154076607_154076654_154078677_154078742_154080747_154080828_154082671
ENSMUST00000045971.9	chr11	-	2155	11	FSM	ENSMUSG00000041189.10	ENSMUST00000045971.9	2155	11	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_10	6.56429737291052	351	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTTTGTCTATTTTTAA	3	True	NA	-2	True	ATTAAA	-24	NA	69686769	69674861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69675588_69675875_69676024_69676532_69676706_69677706_69677931_69683524_69683735_69684290_69684439_69684709_69684819_69684975_69685086_69685794_69685840_69686420_69686561_69686647
ENSMUST00000045976.7	chr14	+	913	2	FSM	ENSMUSG00000071229.4	ENSMUST00000045976.7	913	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	254	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGTTCTTTGTAACTGA	NA	False	NA	NA	False	AAGAAA	-3	NA	122272085	122275832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_122272425_122275258
ENSMUST00000045986.8	chr6	-	1230	3	FSM	ENSMUSG00000033735.10	ENSMUST00000045986.8	1230	3	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_2	5	4224	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGAGTGTGCGTTGTCCTTC	7982	False	NA	NA	False	AATACA	-21	NA	85114748	85110659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_85111271_85113804_85114096_85114420
ENSMUST00000045993.15	chr5	+	1755	10	FSM	ENSMUSG00000035297.15	ENSMUST00000045993.15	1755	10	0	0	0	0	multi-exon	FALSE	canonical	3	1193	junction_9	105.134834062424	3091	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGTGTTCTATTCCTTTT	5273	False	NA	43	True	AATAAA	-45	NA	100666174	100695669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
ENSMUST00000045994.8	chr8	-	3424	11	FSM	ENSMUSG00000033931.10	ENSMUST00000045994.8	3424	11	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_8	10.5470374987482	858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTTAGTGTAATTTCTT	NA	False	NA	0	True	ATTAAA	-29	NA	127697821	127673921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127688661_127688722_127692131_127692373_127696732_127696879_127697487_127697660_127697739
ENSMUST00000046011.12	chr12	+	3021	21	FSM	ENSMUSG00000061458.10	ENSMUST00000046011.12	3021	21	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_7	25.2103153490788	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTGTTTAGCTTA	NA	False	NA	14	True	AATAAA	-17	NA	17398458	17480096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115
ENSMUST00000046030.8	chr2	-	3396	14	FSM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	0	0	0	0	multi-exon	TRUE	canonical	3	379	junction_8	12.585330053057	1347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCGTTTGTATAGCATT	6977	False	NA	-12	True	AATAAA	-16	NA	140012484	139961802	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_139962826_139965450_139965598_139966847_139966925_139971119_139971208_139980852_139980975_139990672_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012396
ENSMUST00000046094.6	chr19	+	1473	7	FSM	ENSMUSG00000040385.8	ENSMUST00000046094.6	1473	7	0	0	0	0	multi-exon	TRUE	canonical	3	3675	junction_3	183.825475806689	16445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATAGCCTCTGTCTCTCTT	3277	False	NA	31	True	AATAAA	-20	NA	4242063	4245419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244690_4244770_4244906_4244980
ENSMUST00000046114.5	chr10	-	604	3	FSM	ENSMUSG00000034932.5	ENSMUST00000046114.5	604	3	0	0	0	0	multi-exon	FALSE	canonical	3	958	junction_1	11.5	8331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTCATGCCCTGTG	3094	False	NA	0	True	AATAAA	-29	NA	81102768	81100546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_81100832_81101484_81101642_81102606
ENSMUST00000046149.9	chr2	+	1057	3	FSM	ENSMUSG00000037740.9	ENSMUST00000046149.9	1057	3	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_1	21	1676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGCCCATTTACTGGCT	385	False	NA	14	True	NA	NA	NA	130405661	130407314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_130405911_130406000_130406352_130406857
ENSMUST00000046191.9	chr14	-	2788	6	FSM	ENSMUSG00000037722.9	ENSMUST00000046191.9	2788	6	0	0	0	0	multi-exon	FALSE	canonical	3	1091	junction_1	71.0419594324368	3768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGATCCATCAGGTAAC	NA	False	NA	NA	False	ATTAAA	-11	NA	45626418	45613790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626204
ENSMUST00000046207.9	chr12	+	1180	4	FSM	ENSMUSG00000037361.9	ENSMUST00000046207.9	1180	4	0	0	0	0	multi-exon	FALSE	canonical	3	1039	junction_3	63.8609600790829	18589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTTTCTCTTGTAA	NA	False	NA	NA	False	NA	NA	NA	4867543	4877659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_4867820_4870593_4870713_4876757_4876897_4877013
ENSMUST00000046244.15	chr17	+	1519	7	FSM	ENSMUSG00000040482.17	ENSMUST00000046244.15	1519	7	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	48.3439643480847	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAAGCACTCTGGTTTGC	2976	False	NA	77	True	NA	NA	NA	35055994	35058209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35056218_35056368_35056731_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
ENSMUST00000046246.13	chr13	-	1697	13	FSM	ENSMUSG00000021493.16	ENSMUST00000046246.13	1697	13	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	33.4015967682185	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTCTGTGCCTCCCCGC	NA	False	NA	-7	True	AATAAA	-15	NA	55661259	55646228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_55646548_55646706_55646823_55646913_55647035_55652470_55652652_55653746_55653982_55654118_55654181_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
ENSMUST00000046255.14	chr6	-	1610	4	FSM	ENSMUSG00000032641.19	ENSMUST00000046255.14	1610	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	18.9267594221045	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCACTATTGATTATGGT	NA	False	NA	-18	True	ACTAAA	-19	NA	134874821	134846070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_134847446_134864592_134864749_134874124_134874177_134874794
ENSMUST00000046288.16	chr17	+	1582	4	FSM	ENSMUSG00000024038.18	ENSMUST00000046288.16	1582	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_3	1707.19269237216	1074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGTGGTTATTTCCCCTC	NA	False	NA	31	True	AATAAA	-21	NA	31739091	31750305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_31739236_31740542_31740667_31746283_31747376_31750083
ENSMUST00000046389.5	chr2	+	1898	10	FSM	ENSMUSG00000042369.9	ENSMUST00000046389.5	1898	10	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_1	22.7991769398766	756	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATGACTTATTTATATGAA	NA	False	NA	55	True	AATAAA	-21	NA	76200327	76214112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_76200773_76202378_76202502_76203903_76204031_76205699_76205823_76206662_76206849_76208724_76208855_76209021_76209107_76209261_76209426_76210708_76210910_76213798
ENSMUST00000046404.8	chr12	+	3261	11	FSM	ENSMUSG00000041712.8	ENSMUST00000046404.8	3261	11	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_2	45.0115540722602	646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTCTGATTGTTCT	NA	False	NA	33	True	ATTAAA	-14	NA	102724225	102743966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952
ENSMUST00000046485.5	chr12	-	2068	6	FSM	ENSMUSG00000021176.7	ENSMUST00000046485.5	2068	6	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_2	7.87400787401181	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCATATTTATGGTATGTA	NA	False	NA	-6	True	ATTAAA	-23	NA	99849701	99683790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_99685363_99820868_99820960_99821796_99821899_99844615_99844662_99849020_99849117_99849540
ENSMUST00000046497.8	chr17	-	1190	4	Antisense	novelGene_ENSMUSG00000040658.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10263	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTCTTCCCGAGCCAACC	1812	False	NA	NA	False	NA	NA	NA	46810550	46807636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr17_-_46807899_46809350_46809420_46809568_46809680_46809802
ENSMUST00000046514.13	chr1	+	4906	32	FSM	ENSMUSG00000026615.15	ENSMUST00000046514.13	4906	32	0	0	0	0	multi-exon	FALSE	canonical	3	1945	junction_14	331.30791485156	2772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTTGGTTCATCCTGCA	NA	False	NA	22	True	AATAAA	-24	NA	185095240	185160557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
ENSMUST00000046518.12	chr12	-	2918	10	FSM	ENSMUSG00000057963.10	ENSMUST00000046518.12	2918	10	0	0	0	0	multi-exon	TRUE	canonical	3	205	junction_5	27.4851250454756	573	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTACGTGGTCACAGTC	2407	False	NA	-1	True	AATAAA	-20	NA	102671189	102534840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_102536744_102540180_102540344_102545363_102545432_102550545_102550712_102554154_102554196_102554722_102554822_102572347_102572466_102589558_102589685_102641701_102641727_102670980
ENSMUST00000046532.4	chr4	-	1880	2	FSM	ENSMUSG00000042367.13	ENSMUST00000046532.4	1880	2	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_1	0	5020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127224637	127219027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_127220565_127224294
ENSMUST00000046534.15	chr17	-	2767	21	FSM	ENSMUSG00000040688.17	ENSMUST00000046534.15	2767	21	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_14	40.6	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCCACTCTTAATCCTGC	NA	False	NA	-11	True	AATAGA	-34	NA	24926605	24919431	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24919760_24919849_24920009_24920093_24920166_24920253_24920358_24920576_24920636_24920715_24920873_24920950_24921022_24921118_24921350_24921449_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924456_24924538_24924681_24924774_24924823_24924908_24925005_24925088_24925141_24926497
ENSMUST00000046542.13	chr3	+	3062	9	FSM	ENSMUSG00000034544.18	ENSMUST00000046542.13	3062	9	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_2	112.554153632818	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACACTGTGACTGCTT	NA	False	NA	10	True	AATAAA	-10	NA	66893035	67265723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_66893140_66901849_66902046_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
ENSMUST00000046549.5	chr17	-	1420	3	FSM	ENSMUSG00000040694.5	ENSMUST00000046549.5	1420	3	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	11.5	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGGCCTGTTCTCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	48739958	48726258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_48726662_48729968_48730534_48739506
ENSMUST00000046558.8	chr4	+	608	6	FSM	ENSMUSG00000063172.14	ENSMUST00000046558.8	608	6	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	99.534114754691	2992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCACTCTGATTCCATTTT	NA	False	NA	-2	True	ATTAAA	-9	NA	107111121	107137125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_107111193_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
ENSMUST00000046587.8	chr9	-	3225	7	FSM	ENSMUSG00000040722.8	ENSMUST00000046587.8	3225	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_3	41.0680329859288	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTCTGTGTTACTTGT	NA	False	NA	0	True	AATAAA	-20	NA	57375341	57348609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638_57358768_57359262_57359318_57375215
ENSMUST00000046614.10	chr3	-	1596	6	FSM	ENSMUSG00000039131.16	ENSMUST00000046614.10	1596	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	6.40624695121879	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTGGGTATTTTTCTT	NA	False	NA	NA	False	CATAAA	-17	NA	151871867	151799475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_151799933_151808255_151808338_151813577_151813685_151833672_151833854_151843209_151843396_151871284
ENSMUST00000046638.10	chr10	-	2033	12	FSM	ENSMUSG00000036009.17	ENSMUST00000046638.10	2033	12	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_11	25.2121576340063	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATCAATGTTCTTGAGTG	NA	False	NA	NA	False	AATAAA	-22	NA	105677239	105599049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661858_105662453_105665708_105665816_105668711_105668877_105676936
ENSMUST00000046644.7	chr13	+	559	4	FSM	ENSMUSG00000042043.7	ENSMUST00000046644.7	559	4	0	0	0	0	multi-exon	FALSE	canonical	3	1242	junction_3	49.6185449202211	29901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAATTTTCAGTTGGCCA	NA	False	NA	37	True	AATAAA	-37	NA	94925417	94979430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_94925511_94968867_94968974_94973615_94973703_94979157
ENSMUST00000046651.7	chr17	+	1135	6	FSM	ENSMUSG00000040771.15	ENSMUST00000046651.7	1135	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	381.26547181721	2366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATGAACGTCTGTGTTC	NA	False	NA	21	True	AATAAA	-29	NA	48717107	48724294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_48717266_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ENSMUST00000046675.12	chr4	-	2639	5	FSM	ENSMUSG00000040795.13	ENSMUST00000046675.12	2639	5	0	0	0	0	multi-exon	TRUE	canonical	3	109	junction_1	14.396180048888	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATGTACAAATATATGTA	NA	False	NA	NA	False	NA	NA	NA	129512892	129508918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
ENSMUST00000046709.9	chr14	-	4673	26	FSM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_21	82.6076606617086	664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTTATGACCATTT	NA	False	NA	-1	True	AATAAA	-40	NA	52434873	52397870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
ENSMUST00000046735.11	chr9	-	1391	6	FSM	ENSMUSG00000040813.17	ENSMUST00000046735.11	1391	6	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_5	67.9187750183997	795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGATTTGAGTTGGTTTT	7880	False	NA	-6	True	AATAAA	-22	NA	106563114	106535950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106563033
ENSMUST00000046748.13	chr3	+	1977	4	FSM	ENSMUSG00000037661.15	ENSMUST00000046748.13	1977	4	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	83.6341238171756	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910137	30951339	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_30910207_30931383_30931711_30944090_30944191_30949858
ENSMUST00000046765.10	chr8	+	2235	3	FSM	ENSMUSG00000033998.10	ENSMUST00000046765.10	2235	3	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_2	9	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGGTTTATTACAACT	NA	False	NA	21	True	AATAAA	-18	NA	126721908	126757424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_126722554_126751750_126752147_126756230
ENSMUST00000046831.11	chr9	-	785	4	FSM	ENSMUSG00000040883.19	ENSMUST00000046831.11	785	4	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_3	45.9879211194514	1701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCCATGGTCATTTTTT	NA	False	NA	-6	True	AATAAA	-13	NA	21838758	21832304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21838587
ENSMUST00000046863.12	chr7	+	1828	7	FSM	ENSMUSG00000042289.12	ENSMUST00000046863.12	1828	7	0	0	0	0	multi-exon	TRUE	canonical	3	65	junction_6	10.2794292967395	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1884	False	NA	14	True	AATAAA	-15	NA	127399775	127402974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407_127401571_127401957
ENSMUST00000046951.10	chr13	+	1722	10	FSM	ENSMUSG00000038683.17	ENSMUST00000046951.10	1722	10	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_5	43.1108247413169	2664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGCTTAATTACATTTAT	NA	False	NA	NA	False	AGTAAA	-28	NA	41154498	41166491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162415_41162694_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040
ENSMUST00000046974.5	chr13	+	1798	10	FSM	ENSMUSG00000037816.11	ENSMUST00000046974.5	1798	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_8	4.29469957557504	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGAGACACATTCCTGCA	NA	False	NA	NA	False	ATTAAA	-21	NA	50571899	50587805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_50572024_50573875_50573914_50577237_50577399_50577787_50577907_50579592_50579803_50580657_50580817_50585575_50585787_50586206_50586383_50586463_50586592_50587333
ENSMUST00000046983.10	chr7	+	2412	6	FSM	ENSMUSG00000037049.10	ENSMUST00000046983.10	2412	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	5.53534100123922	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTTCCTATTTCTTCTTCC	NA	False	NA	11	True	AATAAA	-21	NA	105203566	105207596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_105204045_105204428_105205202_105205713_105205886_105206124_105206202_105206556_105206703_105206830
ENSMUST00000047028.9	chr11	-	3362	5	FSM	ENSMUSG00000042363.15	ENSMUST00000047028.9	3362	5	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_4	26.8269920043228	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCTGGGTTATTACAT	NA	False	NA	-3	True	AATAAA	-17	NA	20781056	20773575	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_20776516_20779268_20779447_20780037_20780127_20780275_20780348_20780973
ENSMUST00000047057.9	chr19	+	1353	6	FSM	ENSMUSG00000041035.10	ENSMUST00000047057.9	1353	6	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_3	22.5601418435257	2965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAATGGTAGCATGTTTCC	3692	False	NA	NA	False	ATTAAA	-19	NA	45549053	45566726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_45549147_45553349_45553431_45560323_45560449_45560843_45560978_45565431_45565535_45565909
ENSMUST00000047086.10	chr17	+	3450	18	FSM	ENSMUSG00000041057.11	ENSMUST00000047086.10	3450	18	0	0	0	0	multi-exon	FALSE	canonical	3	1341	junction_7	117.232918130641	3079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTGTCTCGTGGTGTATA	NA	False	NA	18	True	AATAAA	-18	NA	71923209	71966026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
ENSMUST00000047091.14	chr7	-	2581	11	FSM	ENSMUSG00000038187.15	ENSMUST00000047091.14	2581	11	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_8	39.4138300600183	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACACCTTGGCTAGATTC	NA	False	NA	1	True	AATAAA	-34	NA	112968546	112914832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112950987_112951146_112964111_112964177_112968078_112968166_112968405
ENSMUST00000047119.5	chr5	-	768	4	FSM	ENSMUSG00000038135.5	ENSMUST00000047119.5	768	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	0.471404520791032	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGCGGGCCTCGGAG	NA	False	NA	NA	False	AATAAA	-15	NA	24963006	24956000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_24956188_24959131_24959278_24961034_24961284_24962820
ENSMUST00000047168.13	chr17	+	2089	19	FSM	ENSMUSG00000041119.13	ENSMUST00000047168.13	2089	19	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_18	8.45777456647338	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGGTGTGCATGTGTCCT	NA	False	NA	NA	False	ATTAAA	-22	NA	31605183	31695284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_31605331_31633074_31633146_31634253_31634332_31639218_31639263_31662139_31662195_31662811_31662883_31667340_31667426_31672375_31672455_31674027_31674103_31678048_31678136_31678874_31678980_31679152_31679236_31680544_31680702_31685328_31685443_31688767_31688873_31689654_31689784_31690732_31690829_31692131_31692254_31694898
ENSMUST00000047177.4	chr2	+	956	2	FSM	ENSMUSG00000036992.11	ENSMUST00000047177.4	956	2	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_1	0	4459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATGTCTAAATCTTGAGA	NA	False	NA	15	True	AATAAA	-19	NA	148514545	148517947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_148514756_148517201
ENSMUST00000047218.5	chr14	+	1565	8	FSM	ENSMUSG00000033589.5	ENSMUST00000047218.5	1565	8	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_3	37.0515360886781	1107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTCTCTTCACATCTC	6567	False	NA	30	True	AATAAA	-26	NA	70782793	70786373	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_70783179_70783916_70783990_70784369_70784447_70784554_70784676_70785106_70785221_70785379_70785516_70785624_70785780_70785869
ENSMUST00000047273.3	chr17	+	1745	6	FSM	ENSMUSG00000041199.4	ENSMUST00000047273.3	1745	6	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	16.0299719276111	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGACCATGAGCATATCT	NA	False	NA	24	True	AATAAA	-21	NA	25946690	25950438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25946822_25947176_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
ENSMUST00000047281.10	chr8	+	902	3	FSM	ENSMUSG00000041203.10	ENSMUST00000047281.10	902	3	0	0	0	0	multi-exon	FALSE	canonical	3	920	junction_1	163	4319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGCTTGGTTTATCTT	NA	False	NA	21	True	AGTAAA	-21	NA	85753451	85756915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85753864_85756167_85756246_85756503
ENSMUST00000047285.7	chr3	+	2799	10	FSM	ENSMUSG00000032952.12	ENSMUST00000047285.7	2799	10	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_7	8.73053390247253	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGCCTGTCGTCACTT	NA	False	NA	17	True	ATTAAA	-21	NA	103716943	103729341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
ENSMUST00000047322.8	chr18	+	3209	19	FSM	ENSMUSG00000041238.17	ENSMUST00000047322.8	3209	19	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	21.3625378803961	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAACTAAAATGTGGATG	3291	False	NA	9	True	ATTAAA	-31	NA	11790485	11875935	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_11790750_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
ENSMUST00000047349.8	chr9	+	4133	24	FSM	ENSMUSG00000032267.9	ENSMUST00000047349.8	4133	24	0	0	0	0	multi-exon	FALSE	canonical	3	612	junction_8	78.9995812484415	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTAGCATGACCCTTT	NA	False	NA	13	True	AATAAA	-19	NA	48896764	48953810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935205_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
ENSMUST00000047356.11	chr7	-	1816	3	FSM	ENSMUSG00000038539.16	ENSMUST00000047356.11	1816	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	35.5	467	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGTCTTATCTTTGA	9686	False	NA	0	True	AATAAA	-19	NA	44466082	44461679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44462945_44464412_44464707_44465825
ENSMUST00000047363.14	chr13	+	4396	34	FSM	ENSMUSG00000037851.14	ENSMUST00000047363.14	4396	34	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_17	328.385946197822	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAAGTAGTTATTCTC	NA	False	NA	30	True	ATTAAA	-31	NA	49835605	49887743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865312_49868288_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
ENSMUST00000047368.8	chr3	+	875	8	Antisense	novelGene_ENSMUSG00000033752.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGAGGAGCCGAGCCTGG	NA	False	NA	NA	False	NA	NA	NA	83995239	84063093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr3_+_83995482_84000861_84000907_84012241_84012357_84023733_84023809_84041324_84041474_84045475_84045534_84049005_84049072_84062968
ENSMUST00000047404.7	chr9	+	2601	13	FSM	ENSMUSG00000032435.10	ENSMUST00000047404.7	2601	13	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_8	45.3210767744986	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAGGGTCAAATAACGTG	2126	False	NA	3	True	AATAAA	-16	NA	114517857	114553370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_114518096_114518276_114518351_114534121_114534239_114535074_114535306_114538212_114538383_114542577_114542672_114544161_114544298_114544667_114544780_114546930_114546991_114548925_114548971_114549616_114549738_114550772_114550926_114552320
ENSMUST00000047419.8	chr15	+	837	4	FSM	ENSMUSG00000041736.8	ENSMUST00000047419.8	837	4	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	54.5119762580257	2299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTCTGTACTTAGTGGA	NA	False	NA	21	True	AATAAA	-21	NA	83447792	83458404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_83447846_83455585_83455797_83456400_83456540_83457970
ENSMUST00000047429.9	chr16	+	846	3	FSM	ENSMUSG00000039680.11	ENSMUST00000047429.9	846	3	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	10.5	1671	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACGGCTGTATTGCTTCT	6285	False	NA	5	True	AATAAA	-17	NA	91855157	91909115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_91855369_91896481_91896622_91908620
ENSMUST00000047436.11	chr17	-	1504	13	FSM	ENSMUSG00000041319.15	ENSMUST00000047436.11	1504	13	0	0	0	0	multi-exon	TRUE	canonical	3	423	junction_10	38.5186643070603	881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGCATTTTATTCCC	794	False	NA	-21	True	AATAAA	-14	NA	23892816	23887591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487
ENSMUST00000047498.15	chr2	+	792	5	FSM	ENSMUSG00000033213.17	ENSMUST00000047498.15	792	5	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_4	21.9146070008111	2905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCAAATGCAGATTTCTAA	NA	False	NA	NA	False	TATAAA	-16	NA	122479769	122483111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_122479862_122479991_122480054_122480176_122480263_122481135_122481197_122482620
ENSMUST00000047611.4	chr17	+	1079	6	FSM	ENSMUSG00000041429.4	ENSMUST00000047611.4	1079	6	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_2	26.3772629360971	2642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTGGCCCGTTGGCTT	908	False	NA	11	True	AATAAA	-23	NA	24851655	24857811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24851829_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
ENSMUST00000047616.10	chr11	-	1668	6	FSM	ENSMUSG00000056962.12	ENSMUST00000047616.10	1668	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_2	32.356761271796	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGACAGCTTTCTTT	NA	False	NA	-7	True	AATAAA	-16	NA	116734275	116728257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116728590_116729815_116729955_116731235_116731372_116731894_116732182_116733157_116733547_116733890
ENSMUST00000047627.14	chr13	-	3694	13	FSM	ENSMUSG00000032745.19	ENSMUST00000047627.14	3694	13	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_7	122.771100245765	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTTGTTCTTTGTAGTG	NA	False	NA	-4	True	AATAAA	-15	NA	111626645	111562213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111584429_111584490_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
ENSMUST00000047629.7	chr8	+	2232	17	FSM	ENSMUSG00000041438.9	ENSMUST00000047629.7	2232	17	0	0	0	0	multi-exon	TRUE	canonical	3	1046	junction_1	100.936996902771	2338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTAGACATTTTAAATTA	NA	False	NA	12	True	AATAAA	-17	NA	107620282	107649720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
ENSMUST00000047652.6	chr14	-	2475	9	FSM	ENSMUSG00000037824.7	ENSMUST00000047652.6	2475	9	0	0	0	0	multi-exon	TRUE	canonical	3	610	junction_1	26.6868413267663	1127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGGTGATAAATTGAGC	NA	False	NA	49	True	ATTAAA	-18	NA	40688764	40628401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40688732
ENSMUST00000047672.9	chr10	-	1959	16	FSM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	0	0	0	0	multi-exon	FALSE	canonical	3	1936	junction_8	229.468312990414	9387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTTACTGATCTGT	NA	False	NA	-11	True	AATAAA	-19	NA	116899719	116886905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
ENSMUST00000047689.11	chr11	-	2961	3	FSM	ENSMUSG00000035455.13	ENSMUST00000047689.11	2961	3	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_2	109.5	794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTTTGTAGTCTGTTTG	NA	False	NA	79	True	TTTAAA	-38	NA	11758959	11750287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_11753064_11756095_11756216_11758894
ENSMUST00000047704.8	chr19	-	2548	15	FSM	ENSMUSG00000041491.9	ENSMUST00000047704.8	2548	15	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_1	15.9123876785558	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATATTGAGTGATAAAAT	175	False	NA	NA	False	AATAAA	-16	NA	15962353	15933137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_15933768_15936895_15937065_15938306_15938474_15939735_15939814_15946435_15946565_15947896_15947943_15948259_15948396_15951719_15951832_15952251_15952317_15953612_15953727_15956144_15956320_15958455_15958560_15958828_15958902_15958991_15959165_15961976
ENSMUST00000047721.10	chr9	+	1586	15	FSM	ENSMUSG00000041506.16	ENSMUST00000047721.10	1586	15	0	0	0	0	multi-exon	FALSE	canonical	3	1203	junction_11	74.9465115388084	6432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTGTTCCTCTGGTTT	NA	False	NA	23	True	ATTAAA	-23	NA	106354467	106362623	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
ENSMUST00000047737.10	chr8	+	2847	9	FSM	ENSMUSG00000041515.11	ENSMUST00000047737.10	2847	9	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_1	7.56637297521078	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAATGTTTGTTTCTTTTTT	NA	False	NA	18	True	ATTAAA	-22	NA	121463096	121483433	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_121463149_121466555_121466731_121470444_121470629_121472358_121472448_121473941_121474048_121475037_121475086_121480091_121480473_121481126_121481243_121481737
ENSMUST00000047749.7	chr8	-	1587	4	FSM	ENSMUSG00000036934.10	ENSMUST00000047749.7	1587	4	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_1	19.3045763140937	2744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGGCATACCAGTGTGG	NA	False	NA	94	True	ATTAAA	-21	NA	86159462	86135387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_86136520_86138741_86138925_86153488_86153586_86159287
ENSMUST00000047760.10	chr6	+	1213	3	FSM	ENSMUSG00000038451.14	ENSMUST00000047760.10	1213	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	16	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTTCATTATTGTTTTT	NA	False	NA	19	True	AGTAAA	-22	NA	124785623	124787582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_124785743_124786189_124786933_124787231
ENSMUST00000047768.11	chr8	-	2253	10	FSM	ENSMUSG00000039396.12	ENSMUST00000047768.11	2253	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	6.19039478985961	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTCTTTTGTAAGTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	54092100	54039901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_54040363_54041959_54042135_54052133_54052555_54053985_54054156_54058667_54058835_54060362_54060438_54061749_54061964_54062438_54062574_54076652_54076778_54091790
ENSMUST00000047857.16	chr5	-	2858	11	FSM	ENSMUSG00000039753.17	ENSMUST00000047857.16	2858	11	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_3	32.2155242080584	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTTGTGTTGTGATTT	8828	False	NA	-1	True	AATAAA	-28	NA	43939492	43901957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_43902718_43908203_43908353_43915563_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
ENSMUST00000047860.9	chr5	-	2288	7	FSM	ENSMUSG00000036285.11	ENSMUST00000047860.9	2288	7	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_4	16.2138486760204	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGTCCATGTATCTGTGA	NA	False	NA	69	True	AATAAA	-14	NA	77457931	77442028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_77442404_77444932_77445051_77447504_77447622_77452032_77452165_77454120_77454324_77455399_77455565_77456753
ENSMUST00000047864.11	chr10	+	3089	14	FSM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	0	0	0	0	multi-exon	TRUE	canonical	3	5618	junction_10	706.418033369635	64069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2181	False	NA	32	True	AATAAA	-20	NA	81012464	81018332	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
ENSMUST00000047885.14	chr10	-	2743	12	FSM	ENSMUSG00000039480.15	ENSMUST00000047885.14	2743	12	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_7	12.7305190664984	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTTGTATTATTGAATA	NA	False	NA	-1	True	AATAAA	-17	NA	34294548	34179604	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34274109_34274195_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
ENSMUST00000047889.13	chr11	-	2842	7	FSM	ENSMUSG00000041329.14	ENSMUST00000047889.13	2842	7	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_6	5.18544972870135	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACAGAGCCCTGTGTGTG	NA	False	NA	-7	True	AATAAA	-33	NA	69496655	69490561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69492239_69492350_69492450_69493250_69493308_69493525_69493732_69493832_69493938_69494250_69494380_69496086
ENSMUST00000047899.13	chr14	+	1623	14	FSM	ENSMUSG00000004561.15	ENSMUST00000047899.13	1623	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	48.1261901412816	908	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGATGTTCTGATTGC	NA	False	NA	NA	False	AATAAA	-16	NA	52122298	52129325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126675_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
ENSMUST00000047947.9	chr9	+	1429	10	FSM	ENSMUSG00000070284.11	ENSMUST00000047947.9	1429	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	31.8309578326385	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGACTGGAAGTCAAGC	NA	False	NA	29	True	NA	NA	NA	107926523	107928901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_107926620_107926710_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
ENSMUST00000047951.9	chr4	+	1288	6	FSM	ENSMUSG00000041556.9	ENSMUST00000047951.9	1288	6	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	6.34350061086148	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCACAGATGAATGGACATC	NA	False	NA	23	True	NA	NA	NA	148245077	148250881	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_148245169_148248531_148248913_148249282_148249413_148249484_148249581_148250100_148250231_148250421
ENSMUST00000048054.14	chr17	-	3214	22	FSM	ENSMUSG00000019214.15	ENSMUST00000048054.14	3214	22	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_21	100.708127696462	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTGGGGAGTGTCAGT	5674	False	NA	NA	False	NA	NA	NA	25946393	25937899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946095_25946220
ENSMUST00000048073.9	chr11	+	2501	12	FSM	ENSMUSG00000041958.11	ENSMUST00000048073.9	2501	12	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_10	36.2694234084327	333	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCATAACTCGTTCTTGT	NA	False	NA	28	True	NA	NA	NA	78219240	78233608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78219335_78219557_78219698_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559
ENSMUST00000048138.8	chr3	+	715	4	FSM	ENSMUSG00000042312.11	ENSMUST00000048138.8	715	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	161.897772958398	7777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTATTTATTTATTTA	NA	False	NA	15	True	AATAAA	-20	NA	90421741	90431888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_90421773_90422064_90422327_90423156_90423350_90431659
ENSMUST00000048139.12	chr11	-	1891	10	FSM	ENSMUSG00000041346.12	ENSMUST00000048139.12	1891	10	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_6	29.7960143162773	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTCATTGTGTCTGTT	NA	False	NA	-4	True	TATAAA	-15	NA	69470150	69452584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454372_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
ENSMUST00000048162.10	chr4	+	2823	11	FSM	ENSMUSG00000040859.15	ENSMUST00000048162.10	2823	11	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_3	13.6088206689632	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAAGTGTCCGGGGATGT	NA	False	NA	64	True	ATTAAA	-15	NA	129355373	129382291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129355499_129355734_129355796_129359022_129359140_129360615_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833
ENSMUST00000048192.9	chr18	-	1003	9	FSM	ENSMUSG00000041840.9	ENSMUST00000048192.9	1003	9	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_6	88.5180066427165	6685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTTGTTATCTGTTGCT	NA	False	NA	-1	True	AATACA	-19	NA	77855480	77845267	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
ENSMUST00000048209.16	chr7	+	1588	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	0	0	0	0	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	21756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	19	True	AATAAA	-15	NA	46495262	46505051	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
ENSMUST00000048249.8	chr17	+	528	4	FSM	ENSMUSG00000041881.14	ENSMUST00000048249.8	528	4	0	0	0	0	multi-exon	FALSE	canonical	3	7458	junction_2	513.174650798558	31926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTTTTCTTAGTATTTA	4074	False	NA	33	True	AATATA	-24	NA	34043545	34057291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34043655_34044574_34044625_34048640_34048791_34057072
ENSMUST00000048260.15	chr18	-	3581	14	FSM	ENSMUSG00000041891.17	ENSMUST00000048260.15	3581	14	0	0	0	0	multi-exon	FALSE	canonical	3	538	junction_1	125.2370060817	1836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATGTCTGTATCCTGCTG	NA	False	NA	-3	True	AATAAA	-34	NA	66135710	66113808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_66115782_66116895_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
ENSMUST00000048274.11	chr4	-	1804	16	FSM	ENSMUSG00000038172.15	ENSMUST00000048274.11	1804	16	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_7	23.0820757780192	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAAATTCAATTTTCCAT	NA	False	NA	NA	False	AATAAA	-22	NA	83242476	83158046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_83158432_83159882_83159975_83160375_83160538_83162140_83162201_83162284_83162353_83163266_83163376_83164509_83164576_83165849_83165956_83171222_83171288_83174281_83174350_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
ENSMUST00000048363.10	chr5	-	1333	6	FSM	ENSMUSG00000035505.15	ENSMUST00000048363.10	1333	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_3	53.4714877294432	1478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGTGAGATAATTTC	NA	False	NA	-4	True	AATAAA	-16	NA	90371860	90362582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_90363035_90365375_90365484_90366770_90366893_90367218_90367383_90370089_90370191_90371474
ENSMUST00000048393.8	chr15	+	1270	3	FSM	ENSMUSG00000037204.8	ENSMUST00000048393.8	1270	3	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_2	16.5	5468	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTTGGCCTGTGTCCT	8030	False	NA	31	True	AATAAA	-23	NA	101182152	101188826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_101182427_101184813_101185132_101188148
ENSMUST00000048402.12	chr12	+	2052	12	FSM	ENSMUSG00000021007.15	ENSMUST00000048402.12	2052	12	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	12.115149999242	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCACATATTTATTATTGC	NA	False	NA	17	True	NA	NA	NA	98594415	98636074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_98594594_98598221_98598297_98600482_98600579_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
ENSMUST00000048568.6	chr9	-	1025	2	FSM	ENSMUSG00000042106.6	ENSMUST00000048568.6	1025	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGTCCCATACTCCTG	9756	False	NA	NA	False	AATAAA	-17	NA	107863078	107861421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_107862264_107862895
ENSMUST00000048578.3	chr11	-	1438	8	FSM	ENSMUSG00000041278.11	ENSMUST00000048578.3	1438	8	0	0	0	0	multi-exon	FALSE	canonical	3	649	junction_5	59.12318513416	2878	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGGGGACTATGTTGT	NA	False	NA	-10	True	AATAAA	-12	NA	43638809	43620835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_43621435_43627245_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911_43636275_43638748
ENSMUST00000048642.15	chr16	-	1348	10	FSM	ENSMUSG00000033918.17	ENSMUST00000048642.15	1348	10	0	0	0	0	multi-exon	FALSE	canonical	3	1528	junction_6	107.954723019524	15475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121137	20098569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20112103_20112153_20116342_20116484_20116880_20117077_20120958
ENSMUST00000048670.10	chr9	+	2558	8	FSM	ENSMUSG00000042195.10	ENSMUST00000048670.10	2558	8	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	9.10931346681706	657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGTAGAATCACAATGT	NA	False	NA	39	True	ATTAAA	-15	NA	53678821	53725438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_53679179_53705121_53705298_53708294_53708423_53713901_53714062_53715329_53715487_53716969_53717023_53718158_53718314_53724066
ENSMUST00000048677.9	chr17	+	3595	13	FSM	ENSMUSG00000042203.9	ENSMUST00000048677.9	3595	13	0	0	0	0	multi-exon	TRUE	canonical	3	108	junction_11	15.481844205391	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGGGGCTTTGGTTTCCTG	NA	False	NA	11	True	AATAAA	-17	NA	29768758	29825869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29768969_29783405_29783463_29787365_29787674_29789560_29789741_29790638_29790710_29791943_29792073_29794129_29794196_29797802_29797918_29813650_29813758_29814821_29814898_29818812_29818941_29819119_29819216_29823817
ENSMUST00000048685.13	chr9	-	1256	7	FSM	ENSMUSG00000042210.18	ENSMUST00000048685.13	1256	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	104.56165113888	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTTGTGTTTCCTGAC	NA	False	NA	1	True	AATAAA	-28	NA	106324877	106317249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322851_106322969_106323029_106324729
ENSMUST00000048687.11	chrX	+	1019	3	FSM	ENSMUSG00000042712.11	ENSMUST00000048687.11	1019	3	0	0	0	0	multi-exon	FALSE	canonical	3	2732	junction_2	36	21679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAACAGCCCATCAATTTA	NA	False	NA	8	True	AATAAA	-24	NA	135145827	135147888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_135145977_135146449_135146516_135147084
ENSMUST00000048698.14	chr5	-	2304	15	FSM	ENSMUSG00000036980.14	ENSMUST00000048698.14	2304	15	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_14	100.146932869985	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	1952	False	NA	-4	True	AATAAA	-18	NA	138185488	138176878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185431
ENSMUST00000048706.10	chr4	-	2300	20	FSM	ENSMUSG00000040044.12	ENSMUST00000048706.10	2300	20	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_6	85.9268193438375	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTGCTTCATTCTTGCT	NA	False	NA	-17	True	CATAAA	-21	NA	34614944	34570795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
ENSMUST00000048766.15	chr3	+	1122	5	FSM	ENSMUSG00000028102.16	ENSMUST00000048766.15	1122	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	117.48829728956	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTTTTATTCAATTCA	NA	False	NA	9	True	ATTAAA	-16	NA	96542987	96552042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96543060_96543989_96544106_96544446_96544649_96550890_96551332_96551751
ENSMUST00000048788.14	chr16	+	2866	9	FSM	ENSMUSG00000036208.14	ENSMUST00000048788.14	2866	9	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	9.69455388349562	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCAATGCCATCACCTGA	NA	False	NA	NA	False	NA	NA	NA	44544663	44557647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_44544832_44547390_44547546_44549604_44549685_44549944_44550077_44550482_44550561_44551694_44552060_44552420_44552483_44554903_44555161_44556078
ENSMUST00000048807.12	chr11	+	3003	3	FSM	ENSMUSG00000040599.14	ENSMUST00000048807.12	3003	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	24	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTATTATTGCTTAAT	NA	False	NA	16	True	AATAAA	-37	NA	70910436	70918197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70911016_70915375_70915538_70915935
ENSMUST00000048820.14	chr1	-	717	5	FSM	ENSMUSG00000073643.12	ENSMUST00000048820.14	717	5	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_1	81.1984451821585	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTAATTATTTTTATACA	NA	False	NA	NA	False	CATAAA	-18	NA	79739486	79704119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
ENSMUST00000048898.17	chr8	-	2488	14	FSM	ENSMUSG00000039431.17	ENSMUST00000048898.17	2488	14	0	0	0	0	multi-exon	TRUE	canonical	3	263	junction_13	15.5985130530912	342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAATGTAATCATTTTAT	NA	False	NA	38	True	AATAAA	-23	NA	41087819	41004141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_41004955_41007311_41007439_41008816_41008958_41011196_41011398_41013897_41013948_41015610_41015737_41017000_41017111_41034455_41034589_41040090_41040226_41043452_41043582_41050325_41050484_41059801_41059965_41061936_41062060_41087740
ENSMUST00000048914.8	chr8	+	607	2	FSM	ENSMUSG00000034880.8	ENSMUST00000048914.8	607	2	0	0	0	0	multi-exon	FALSE	canonical	3	904	junction_1	0	9402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTACGTATGTATTAACT	8920	False	NA	18	True	AATAAA	-18	NA	71917602	71918391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71917712_71917893
ENSMUST00000048937.6	chr9	+	2180	12	FSM	ENSMUSG00000042487.7	ENSMUST00000048937.6	2180	12	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_2	48.4889013457617	1361	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCCTATGCTTAAGAAAAC	926	False	NA	5	True	AATAAA	-14	NA	75348817	75373714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_75348918_75352516_75353276_75354383_75354489_75355583_75355679_75356638_75356785_75357769_75357855_75361905_75362001_75362922_75363058_75364339_75364476_75365356_75365544_75368287_75368386_75373475
ENSMUST00000048946.7	chr13	-	804	6	FSM	ENSMUSG00000037960.12	ENSMUST00000048946.7	804	6	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_5	10.4115320678563	666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCCTGTCGAATGTCTT	NA	False	NA	-7	True	ATTAAA	-13	NA	49369502	49356426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_49356712_49357193_49357266_49357404_49357465_49358667_49358822_49361479_49361623_49369412
ENSMUST00000048962.4	chrX	+	4983	30	FSM	ENSMUSG00000034311.4	ENSMUST00000048962.4	4983	30	0	0	0	0	multi-exon	TRUE	canonical	3	204	junction_20	20.3345386022518	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAAGGAGATCCTTCTAT	NA	False	NA	18	True	AATAAA	-22	NA	99669342	99770820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_99670195_99670309_99670425_99677444_99677636_99679289_99679383_99681889_99682057_99682282_99682378_99708341_99708459_99709278_99709455_99713514_99713577_99720892_99721026_99723451_99723511_99723614_99723721_99732663_99732721_99734119_99734306_99738476_99738581_99739603_99739749_99741036_99741148_99747647_99747732_99748395_99748510_99755397_99755554_99755667_99755769_99757483_99757614_99759186_99759358_99759876_99759985_99760936_99761015_99761542_99761642_99762099_99762277_99768247_99768365_99769733_99769857_99770064
ENSMUST00000048994.7	chr17	-	1447	4	FSM	ENSMUSG00000042419.9	ENSMUST00000048994.7	1447	4	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	9.89949493661167	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGAGTCTCCTCTGTTT	NA	False	NA	-1	True	NA	NA	NA	35454768	35439150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35439953_35440112_35440335_35453927_35454208_35454625
ENSMUST00000049009.7	chr5	-	1631	11	FSM	ENSMUSG00000038569.14	ENSMUST00000049009.7	1631	11	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_9	5.37494186015067	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGGTCATTTTATA	9992	False	NA	NA	False	AATAAA	-17	NA	122492296	122463570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_122464043_122469531_122469761_122471358_122471479_122472324_122472390_122472472_122472580_122477794_122477902_122482260_122482361_122489321_122489437_122489623_122489774_122490606_122490678_122492201
ENSMUST00000049022.15	chr13	+	1187	4	FSM	ENSMUSG00000037966.16	ENSMUST00000049022.15	1187	4	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_2	21.013223349966	1776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGGTTCCATGTGCCA	NA	False	NA	13	True	AATAAA	-15	NA	49340960	49349720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_49341114_49347211_49347441_49348369_49348534_49349079
ENSMUST00000049091.9	chr11	-	2915	7	FSM	ENSMUSG00000042148.9	ENSMUST00000049091.9	2915	7	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_1	27.1272720502613	948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCGTGTGTCCTGTGT	5007	False	NA	-4	True	AATAAA	-14	NA	63970292	63853452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_63855355_63867069_63867303_63884711_63884783_63936052_63936178_63962343_63962663_63964362_63964497_63970161
ENSMUST00000049093.8	chr3	+	2795	8	FSM	ENSMUSG00000038393.15	ENSMUST00000049093.8	2795	8	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	94.3746333956929	1035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAAATGTTCTTTTCT	NA	False	NA	19	True	AATAAA	-14	NA	96465275	96469173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96465802_96466207_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
ENSMUST00000049128.11	chr16	+	1130	7	FSM	ENSMUSG00000052917.16	ENSMUST00000049128.11	1130	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_6	9.3407708461347	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTAATGACATTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	55895826	55946902	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_55895942_55902718_55902772_55909746_55909828_55917702_55917795_55931968_55932167_55944141_55944334_55946503
ENSMUST00000049130.8	chrX	-	903	3	FSM	ENSMUSG00000042750.8	ENSMUST00000049130.8	903	3	0	0	0	0	multi-exon	FALSE	canonical	3	901	junction_2	34	11963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGTAGTTCTTTAAAGG	4156	False	NA	0	True	AATAAA	-18	NA	134968985	134967312	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_134967957_134968348_134968422_134968799
ENSMUST00000049166.5	chr6	-	1516	4	FSM	ENSMUSG00000032757.7	ENSMUST00000049166.5	1516	4	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_1	40.3016404408335	2551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTGTTCTTGGCAT	NA	False	NA	0	True	ATTAAA	-22	NA	4086972	4076898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_4078037_4079960_4080018_4082457_4082583_4086776
ENSMUST00000049207.9	chr16	+	1669	12	FSM	ENSMUSG00000039427.15	ENSMUST00000049207.9	1669	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	58.3112197360631	793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTGCTCTGAGCCTGTG	1297	False	NA	26	True	AATAAA	-27	NA	5051501	5062776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_5051722_5053026_5053131_5054183_5054333_5056508_5056599_5056919_5057031_5057769_5057892_5058007_5058047_5058322_5058383_5059149_5059261_5060352_5060468_5061551_5061628_5062304
ENSMUST00000049245.10	chr8	-	1695	2	FSM	ENSMUSG00000037070.11	ENSMUST00000049245.10	1695	2	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_1	0	2888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTCTTGATTTCTCC	NA	False	NA	NA	False	AGTAAA	-18	NA	79235527	79231897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_79233493_79235427
ENSMUST00000049246.7	chr6	+	1612	2	FSM	ENSMUSG00000034639.8	ENSMUST00000049246.7	1612	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACTCCCGATCTTATTA	NA	False	NA	6	True	AATAAA	-16	NA	108042005	108054083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_108042201_108052666
ENSMUST00000049257.8	chr11	+	3194	15	FSM	ENSMUSG00000020677.8	ENSMUST00000049257.8	3194	15	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_7	30.0713437392763	942	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTAATTGTTTTGTTCT	NA	False	NA	NA	False	AATAAA	-26	NA	83832887	83853914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_83833091_83834068_83834268_83835361_83835496_83836930_83837117_83839270_83839415_83840408_83840521_83842115_83842189_83842937_83843142_83844052_83844144_83845906_83846030_83846114_83846266_83846797_83846874_83848291_83848364_83850272_83850360_83852575
ENSMUST00000049312.14	chr14	-	1594	7	FSM	ENSMUSG00000035953.15	ENSMUST00000049312.14	1594	7	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_6	212.437441772082	1108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCACTTAACAACTT	NA	False	NA	-9	True	AATAAA	-18	NA	51168313	51164671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51166658_51166765_51167040_51167148_51167590_51167782_51168090
ENSMUST00000049323.9	chr18	+	1619	7	FSM	ENSMUSG00000042660.9	ENSMUST00000049323.9	1619	7	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_5	28.487814158962	2201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGGTGCCAAGCTGGGA	NA	False	NA	4	True	AATAAA	-19	NA	36893272	36896863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_36893534_36895029_36895131_36895218_36895307_36895407_36895588_36895710_36895811_36895901_36896072_36896144
ENSMUST00000049343.15	chr7	-	3454	27	FSM	ENSMUSG00000038644.15	ENSMUST00000049343.15	3454	27	0	0	0	0	multi-exon	FALSE	canonical	3	875	junction_26	151.95728923444	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGTTGTGGTCTTTG	NA	False	NA	-2	True	AATAAA	-21	NA	44198271	44182169	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
ENSMUST00000049352.8	chr11	+	1291	2	FSM	ENSMUSG00000038721.9	ENSMUST00000049352.8	1291	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACACGCTGTGTTTTCT	84	False	NA	NA	False	AATAAA	-17	NA	96177448	96180988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_96177954_96180202
ENSMUST00000049353.9	chr11	+	1860	12	FSM	ENSMUSG00000037243.18	ENSMUST00000049353.9	1860	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	44.8549544883144	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATATAAGAATCTGGGAGT	7776	False	NA	28	True	AATAAA	-35	NA	58197997	58205453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_58198083_58198337_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200492_58200779_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
ENSMUST00000049369.16	chr19	-	1992	10	FSM	ENSMUSG00000042694.18	ENSMUST00000049369.16	1992	10	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_2	7.26907877057606	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCATTTCCTTATGACTT	NA	False	NA	-10	True	AATAAA	-27	NA	47525558	47489471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_47490157_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634_47524811_47525252
ENSMUST00000049385.14	chr11	+	1322	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	0	0	0	0	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	85425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGATGTCCAGATTGCAC	3957	False	NA	21	True	AATAAA	-17	NA	100210710	100212922	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
ENSMUST00000049388.9	chr18	+	1610	7	FSM	ENSMUSG00000042705.10	ENSMUST00000049388.9	1610	7	0	0	0	0	multi-exon	FALSE	canonical	3	1216	junction_3	103.11913282973	3238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCGTACAATGTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	47091882	47221062	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47219318_47219379_47220094
ENSMUST00000049411.12	chr14	+	1239	5	FSM	ENSMUSG00000035960.15	ENSMUST00000049411.12	1239	5	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_1	194.901898400195	6373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTTTCTTTGTCCCT	179	False	NA	14	True	AATAAA	-15	NA	51162424	51164596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_51162487_51162669_51162782_51162973_51163162_51163617_51163811_51163912
ENSMUST00000049412.12	chr2	-	2840	12	FSM	ENSMUSG00000039536.17	ENSMUST00000049412.12	2840	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	83.9578800341857	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGTCTTTTTCCAATT	NA	False	NA	-21	True	AATAAA	-9	NA	166838023	166790066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_166791280_166791619_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797033_166801942_166802042_166805348_166805515_166806498_166806638_166837953
ENSMUST00000049424.11	chr19	+	1204	11	FSM	ENSMUSG00000042729.12	ENSMUST00000049424.11	1204	11	0	0	0	0	multi-exon	FALSE	canonical	3	1012	junction_8	78.6635875103596	4452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGACCTTTTGTGATGG	975	False	NA	28	True	AATAAA	-21	NA	8713202	8717988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
ENSMUST00000049460.12	chr11	+	2331	13	FSM	ENSMUSG00000034708.13	ENSMUST00000049460.12	2331	13	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_1	53.84932682959	1918	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGTATCTGATTTGTTGC	4138	False	NA	15	True	AATAAA	-17	NA	102321147	102327633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
ENSMUST00000049470.11	chr1	-	3149	8	FSM	ENSMUSG00000042305.13	ENSMUST00000049470.11	3149	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	214.632196074673	1281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGCTCAACTTGTGAGT	NA	False	NA	-9	True	AATAAA	-16	NA	134289717	134273834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
ENSMUST00000049527.7	chr11	+	3359	11	FSM	ENSMUSG00000020612.17	ENSMUST00000049527.7	3359	11	0	0	0	0	multi-exon	FALSE	canonical	3	1417	junction_9	119.858458191318	3277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGAATCAGTTTTTCTTC	NA	False	NA	20	True	AATAAA	-25	NA	109541746	109560482	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
ENSMUST00000049530.14	chr15	-	2092	3	FSM	ENSMUSG00000047878.14	ENSMUST00000049530.14	2092	3	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	20.5	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATGCCTCATGGTCACA	2223	False	NA	-8	True	AATAAA	-16	NA	83135975	83110922	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_83112796_83114714_83114859_83135900
ENSMUST00000049567.10	chr9	-	3172	6	FSM	ENSMUSG00000003308.16	ENSMUST00000049567.10	3172	6	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	30.9993548319961	516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTGGCTCTGAATTAACC	NA	False	NA	0	True	AATAAA	-17	NA	21150367	21141026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150088
ENSMUST00000049628.16	chr5	-	371	4	FSM	ENSMUSG00000050856.17	ENSMUST00000049628.16	371	4	0	0	0	0	multi-exon	FALSE	canonical	3	3979	junction_1	506.673026275877	24074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTCTCTCTTTACTGTTT	5502	False	NA	0	True	AATAAA	-24	NA	108582314	108581109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_108581204_108581596_108581696_108581891_108581947_108582191
ENSMUST00000049642.6	chr17	-	1473	1	FSM	ENSMUSG00000045316.6	ENSMUST00000049642.6	1473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	402	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACTTTCTTTTCCCAGG	NA	False	NA	3	True	AATAAA	-24	NA	25069338	25067865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25067900_25069300
ENSMUST00000049644.9	chr6	+	833	4	FSM	ENSMUSG00000046323.9	ENSMUST00000049644.9	833	4	0	0	0	0	multi-exon	FALSE	canonical	3	943	junction_3	656.420766141826	13514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCGACTCTTTGTAATTTA	680	False	NA	24	True	AATAAA	-14	NA	122603368	122607231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_122603570_122605535_122605769_122606259_122606296_122606868
ENSMUST00000049732.11	chr14	-	311	2	FSM	ENSMUSG00000058351.12	ENSMUST00000049732.11	311	2	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	0	800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATTTCAGCCATTTT	NA	False	NA	-11	True	AATAAA	-18	NA	30850795	30846461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_30846567_30850589
ENSMUST00000049821.4	chr4	-	750	5	FSM	ENSMUSG00000045699.5	ENSMUST00000049821.4	750	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	126.107840755442	1172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTGTTTTCTACCATTA	NA	False	NA	-2	True	AATACA	-20	NA	146994047	146976862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993875
ENSMUST00000049822.10	chr3	+	1781	6	FSM	ENSMUSG00000028145.10	ENSMUST00000049822.10	1781	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	4.47213595499958	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCTTCTTGTTTTCAC	NA	False	NA	17	True	AATAAA	-27	NA	94217395	94239847	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_94217596_94224696_94224884_94230888_94231049_94231583_94231692_94237068_94237194_94238846
ENSMUST00000049896.13	chrX	+	3579	11	FSM	ENSMUSG00000031148.15	ENSMUST00000049896.13	3579	11	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_9	32.218007387174	286	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCGCATTTGTGTTATC	NA	False	NA	NA	False	NA	NA	NA	7563369	7576501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7563635_7564731_7564893_7564994_7565120_7568301_7568412_7569608_7569823_7571538_7571672_7572249_7572389_7572566_7572691_7572930_7573001_7574174_7574261_7574349
ENSMUST00000049908.11	chr8	-	1475	17	FSM	ENSMUSG00000070003.8	ENSMUST00000049908.11	1475	17	0	0	0	0	multi-exon	TRUE	canonical	3	428	junction_1	289.200298236361	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTACTGCTGATGTCT	NA	False	NA	-10	True	AATAAA	-17	NA	71060964	71050139	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71050419_71050662_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
ENSMUST00000049911.16	chr17	-	1138	7	FSM	ENSMUSG00000015120.16	ENSMUST00000049911.16	1138	7	0	0	0	0	multi-exon	TRUE	canonical	3	77	junction_6	1792.78505404301	7371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTGTTGCATTATCAT	3820	False	NA	NA	False	AATAAA	-14	NA	25493284	25480889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493146
ENSMUST00000049966.6	chr6	+	921	5	FSM	ENSMUSG00000030058.18	ENSMUST00000049966.6	921	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	373.284408996679	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGCCTCTTACCCAGTT	NA	False	NA	NA	False	AAAACA	-14	NA	87864909	87867741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171
ENSMUST00000050004.3	chr18	+	1348	6	FSM	ENSMUSG00000033107.7	ENSMUST00000050004.3	1348	6	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	22.5335305711289	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGCTGGGTGTGGTGGCG	5341	False	NA	NA	False	NA	NA	NA	21077681	21116919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_21077815_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
ENSMUST00000050083.6	chrX	-	3090	23	FSM	ENSMUSG00000031095.16	ENSMUST00000050083.6	3090	23	0	0	0	0	multi-exon	FALSE	non_canonical	3	112	junction_22	288.723912992818	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATGTTATTTGACTTCT	NA	False	NA	-5	True	GATAAA	-14	NA	37665060	37622450	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37664956
ENSMUST00000050104.8	chr6	+	2083	4	FSM	ENSMUSG00000046733.8	ENSMUST00000050104.8	2083	4	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	5.71547606649408	374	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATTTATTTATTT	NA	False	NA	32	True	AATAAA	-32	NA	135042648	135061707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_135042774_135055543_135056483_135060440_135060497_135060744
ENSMUST00000050129.6	chr5	-	542	3	FSM	ENSMUSG00000049387.11	ENSMUST00000050129.6	542	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	6	501	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAATAAGTTGTTGAAAAC	NA	False	NA	NA	False	AATAAA	-15	NA	71705548	71600166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_71600613_71660793_71660857_71705515
ENSMUST00000050205.12	chr5	+	954	5	FSM	ENSMUSG00000036639.13	ENSMUST00000050205.12	954	5	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	49.2461927462418	2671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317663	140323892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_140317711_140318177_140318229_140320209_140320375_140321067_140321214_140323347
ENSMUST00000050207.10	chr11	-	1309	4	FSM	ENSMUSG00000046909.10	ENSMUST00000050207.10	1309	4	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_2	2.16024689946929	2693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCCTTCTTTGCTTAA	NA	False	NA	-4	True	AATAAA	-14	NA	80033001	80027503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_80028106_80028743_80028894_80030691_80031150_80032902
ENSMUST00000050211.7	chr8	-	2406	10	FSM	ENSMUSG00000035824.8	ENSMUST00000050211.7	2406	10	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	11.1055541659718	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCATTCATTCATTCAT	NA	False	NA	6	True	AATAAA	-30	NA	104975190	104953316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_104954984_104955844_104955926_104957176_104957257_104957791_104957881_104963403_104963478_104965375_104965466_104967747_104967802_104970016_104970092_104974278_104974317_104975032
ENSMUST00000050214.9	chr17	-	2102	14	FSM	ENSMUSG00000002625.11	ENSMUST00000050214.9	2102	14	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_6	38.0609912279546	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTTCGTTTGTGCTGTGG	NA	False	NA	0	True	AATAAA	-17	NA	32569581	32540397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
ENSMUST00000050273.9	chr16	+	444	3	FSM	ENSMUSG00000046516.11	ENSMUST00000050273.9	444	3	0	0	0	0	multi-exon	FALSE	canonical	3	2901	junction_2	455	46920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTGTTGTGTTTCTTTT	NA	False	NA	28	True	ATTAAA	-30	NA	38167352	38173125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_38167570_38169602_38169692_38172987
ENSMUST00000050323.6	chr2	+	1606	8	FSM	ENSMUSG00000002104.12	ENSMUST00000050323.6	1606	8	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	10.5791477608992	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAGTGATTCTGACCCTT	NA	False	NA	7	True	AATAAA	-15	NA	90865985	90876074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_90866334_90866891_90867231_90872198_90872358_90873304_90873404_90873484_90873608_90874035_90874090_90875184_90875385_90875790
ENSMUST00000050328.15	chrX	-	3647	12	FSM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	0	0	0	0	multi-exon	TRUE	canonical	3	1008	junction_2	64.9970120101527	1925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTGTGCCCATGTGTTT	NA	False	NA	-2	True	AATAAA	-21	NA	93256315	93232312	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
ENSMUST00000050410.11	chr2	-	775	5	FSM	ENSMUSG00000044627.12	ENSMUST00000050410.11	775	5	0	0	0	0	multi-exon	FALSE	canonical	3	3309	junction_1	124.51380445557	37261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178087	32168827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32177897
ENSMUST00000050476.11	chr18	+	2362	4	FSM	ENSMUSG00000033272.13	ENSMUST00000050476.11	2362	4	0	0	0	0	multi-exon	TRUE	canonical	3	118	junction_3	140.362229804017	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATGTACAGTTGTCCTG	NA	False	NA	11	True	AATAAA	-29	NA	36812631	36816906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_36812677_36813568_36813668_36814580_36814819_36814926
ENSMUST00000050487.16	chr18	+	1224	8	FSM	ENSMUSG00000024610.16	ENSMUST00000050487.16	1224	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	5.45108115095397	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTGCTTCTGCCTCTTCA	NA	False	NA	7	True	AATAAA	-17	NA	60936919	60945724	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_60937083_60940979_60941150_60941303_60941384_60942099_60942163_60943053_60943147_60943399_60943491_60944930_60944994_60945223
ENSMUST00000050516.14	chr10	+	1450	11	FSM	ENSMUSG00000044475.15	ENSMUST00000050516.14	1450	11	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_7	12.5797456254091	1244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTGTGGTCTGTGCA	NA	False	NA	26	True	AATAAA	-16	NA	59838660	59935808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_59838730_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
ENSMUST00000050542.6	chr18	-	565	2	FSM	ENSMUSG00000024240.14	ENSMUST00000050542.6	565	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGTTATTTAACCTTTTA	-18	True	NA	NA	False	AATAAA	-15	NA	6490856	6489159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_6489331_6490462
ENSMUST00000050551.10	chrX	-	901	3	FSM	ENSMUSG00000051159.17	ENSMUST00000050551.10	901	3	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_2	38	1622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGCCTGGGTGTGTTCTT	NA	False	NA	0	True	AATAAA	-20	NA	101295787	101290986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_101291615_101292168_101292294_101295639
ENSMUST00000050552.15	chr1	+	3876	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	0	0	0	0	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	2451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTACTGTGTCTGTGCTTT	657	False	NA	13	True	NA	NA	NA	58432056	58446512	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
ENSMUST00000050580.11	chr4	-	402	4	FSM	ENSMUSG00000063882.13	ENSMUST00000050580.11	402	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	490.539159157214	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7697	False	NA	-7	True	AATAAA	-17	NA	115932228	115924161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_115924370_115927059_115927117_115927933_115927955_115932112
ENSMUST00000050584.10	chr18	-	831	3	Antisense	novelGene_ENSMUSG00000046727.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCCGAGCCTCCTGCGCT	NA	False	NA	NA	False	NA	NA	NA	36536033	36481749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr18_-_36481870_36499567_36499795_36535549
ENSMUST00000050630.14	chr17	+	1508	12	FSM	ENSMUSG00000038954.15	ENSMUST00000050630.14	1508	12	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_7	13.7774519348892	681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGAGTGGCCTGCTTTGTTT	NA	False	NA	26	True	AATAAA	-27	NA	45088038	45430177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_45088316_45097496_45097598_45234065_45234151_45302620_45302708_45305203_45305295_45313976_45314117_45344124_45344201_45347598_45347712_45348962_45349071_45352102_45352274_45359168_45359280_45430029
ENSMUST00000050705.4	chr16	+	1271	6	FSM	ENSMUSG00000058550.16	ENSMUST00000050705.4	1271	6	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_3	211.400094607358	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104149	48114600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_48104205_48108240_48108359_48109401_48109464_48111376_48111678_48113273_48113470_48114061
ENSMUST00000050735.12	chr7	+	4006	3	FSM	ENSMUSG00000049421.14	ENSMUST00000050735.12	4006	3	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	24	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTGTTGTTTTCCTTTT	NA	False	NA	13	True	NA	NA	NA	29794218	29807047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_29794637_29798952_29799148_29803654
ENSMUST00000050813.4	chr10	-	1567	3	FSM	ENSMUSG00000049038.4	ENSMUST00000050813.4	1567	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	4.5	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTATTCCAAAACATCAT	NA	False	NA	2	True	AATAAA	-23	NA	84963891	84955296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_84956679_84962231_84962351_84963825
ENSMUST00000050827.14	chr5	-	2344	12	FSM	ENSMUSG00000029422.16	ENSMUST00000050827.14	2344	12	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_7	200.336700053759	1415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATTGTATGCTATTTGC	4346	False	NA	NA	False	AATAAA	-15	NA	123887452	123866488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
ENSMUST00000050880.8	chr11	+	2695	17	FSM	ENSMUSG00000039908.15	ENSMUST00000050880.8	2695	17	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	16.3122605346408	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGATGTGTGTGTGGTGT	NA	False	NA	NA	False	ATTAAA	-24	NA	119246382	119271905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_119246462_119247633_119247860_119248803_119248997_119250122_119250209_119253042_119253123_119254225_119254369_119259489_119259666_119260018_119260092_119261574_119261626_119263936_119263998_119265310_119265367_119265590_119265732_119267607_119267736_119267994_119268095_119268519_119268654_119270684_119270758_119271010
ENSMUST00000050881.10	chr16	+	1329	3	FSM	ENSMUSG00000022516.11	ENSMUST00000050881.10	1329	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	274	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGTTGCTTCTGAGTG	105	False	NA	9	True	AATAAA	-15	NA	4756985	4758880	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_4757158_4757241_4757578_4758059
ENSMUST00000050905.16	chr9	-	1259	10	FSM	ENSMUSG00000032366.16	ENSMUST00000050905.16	1259	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_8	231.62890712794	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGGTACTTTTTTATT	NA	False	NA	1	True	AATAAA	-22	NA	66956546	66935173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
ENSMUST00000050993.11	chr12	+	1969	11	FSM	ENSMUSG00000021282.18	ENSMUST00000050993.11	1969	11	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	700.620753332357	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGACTTTGGGCTATGA	NA	False	NA	18	True	AATAAA	-19	NA	111505215	111511357	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_111505382_111505841_111506122_111506234_111506317_111506563_111506737_111506894_111507007_111508139_111508280_111508585_111508745_111509113_111509276_111509533_111509699_111509960_111510096_111510962
ENSMUST00000051011.14	chr10	-	2335	5	FSM	ENSMUSG00000047090.14	ENSMUST00000051011.14	2335	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	8.20060973342836	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGGAGATGCGCCTCTA	5737	False	NA	-7	True	AATAAA	-18	NA	128640239	128635904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128637099_128637219_128637381_128637804_128638387_128638966_128639227_128640101
ENSMUST00000051043.4	chr4	-	913	3	FSM	ENSMUSG00000046133.4	ENSMUST00000051043.4	913	3	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	115.5	1554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTCTTCTTGATGT	NA	False	NA	-2	True	ATTAAA	-26	NA	101750986	101747216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_101747741_101747885_101748198_101750909
ENSMUST00000051064.9	chr3	+	3292	9	FSM	ENSMUSG00000043542.13	ENSMUST00000051064.9	3292	9	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_7	36.9256008752735	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCTTTTTTTTCTTGG	NA	False	NA	10	True	NA	NA	NA	7568542	7618896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_7568588_7581515_7581593_7583423_7583541_7589185_7589328_7591328_7591478_7593089_7593190_7593644_7593745_7604135_7604244_7616442
ENSMUST00000051094.9	chr8	-	1792	6	FSM	ENSMUSG00000015341.18	ENSMUST00000051094.9	1792	6	0	0	0	0	multi-exon	TRUE	canonical	3	715	junction_5	234.329170185873	3594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTCTTGTCTTAGTCTA	NA	False	NA	-19	True	AATAAA	-1	NA	23747090	23731361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689_23746823_23747035
ENSMUST00000051226.8	chr15	+	2879	23	FSM	ENSMUSG00000033065.15	ENSMUST00000051226.8	2879	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	24.5577830991277	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTGTTTTGGGCGCTCTT	1596	False	NA	1	True	AATAAA	-13	NA	98006346	98030322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_98006493_98010034_98010128_98016062_98016137_98017273_98017352_98018671_98018862_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
ENSMUST00000051256.10	chrX	+	2253	4	FSM	ENSMUSG00000033460.15	ENSMUST00000051256.10	2253	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	53.7463177033243	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618718	133622666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_133618800_133619668_133619858_133620375_133620475_133620782
ENSMUST00000051341.6	chr15	+	1754	2	FSM	ENSMUSG00000045665.6	ENSMUST00000051341.6	1754	2	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_1	0	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCCTCTCCTGTACCCA	NA	False	NA	27	True	AATAAA	-23	NA	102187888	102190189	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102188065_102188611
ENSMUST00000051356.12	chr7	+	2923	14	FSM	ENSMUSG00000004056.16	ENSMUST00000051356.12	2923	14	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_1	140.806720522774	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAGTCCACATTTCCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	27305282	27338878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27305363_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
ENSMUST00000051364.4	chr7	-	763	2	FSM	ENSMUSG00000044709.7	ENSMUST00000051364.4	763	2	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_1	0	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGCTGCTGTGTGTGTGT	2944	False	NA	-9	True	AATAAA	-19	NA	19307268	19298873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19299602_19307233
ENSMUST00000051477.13	chr4	-	2108	6	FSM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	0	0	0	0	multi-exon	FALSE	canonical	3	1589	junction_5	116.347067002138	13454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGAAGGTTATTTTCCTC	NA	False	NA	-1	True	ATTAAA	-24	NA	137085031	137047006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
ENSMUST00000051490.15	chr13	+	764	5	FSM	ENSMUSG00000050002.15	ENSMUST00000051490.15	764	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	87.5928079239386	1323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCGGGCTGTACTGTAAA	NA	False	NA	2	True	NA	NA	NA	58305462	58311760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_58305551_58307690_58307722_58307965_58308053_58310651_58310696_58311246
ENSMUST00000051493.8	chr11	-	1753	2	FSM	ENSMUSG00000043648.8	ENSMUST00000051493.8	1753	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGCATGTCTACCTTA	NA	False	NA	-13	True	AATAAA	-16	NA	59678471	59674722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_59676052_59678047
ENSMUST00000051495.7	chr7	-	699	2	FSM	ENSMUSG00000049761.7	ENSMUST00000051495.7	699	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCTGTGTCTGGGTGTA	NA	False	NA	NA	False	AATAAA	-21	NA	30371030	30370146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30370606_30370790
ENSMUST00000051589.9	chr9	-	2843	6	FSM	ENSMUSG00000025894.12	ENSMUST00000051589.9	2843	6	0	0	0	0	multi-exon	FALSE	canonical	3	643	junction_4	99.1576522513517	5979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTAGGGCTTGACATGT	1	True	NA	NA	False	AATAAA	-45	NA	4309467	4294792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309253
ENSMUST00000051594.12	chr13	+	2563	11	FSM	ENSMUSG00000021697.13	ENSMUST00000051594.12	2563	11	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	8.78009111570034	290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGTGTTTTTCTTCTT	2847	False	NA	39	True	NA	NA	NA	108452865	108526119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_108453004_108460439_108460706_108493927_108494064_108498768_108498897_108500066_108500198_108505346_108505395_108510246_108510388_108519289_108519457_108521259_108521437_108523368_108523555_108525074
ENSMUST00000051633.3	chr4	-	2992	2	FSM	ENSMUSG00000047719.3	ENSMUST00000051633.3	2992	2	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	0	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGTGGCTTTGTTTCTT	NA	False	NA	0	True	ATTAAA	-16	NA	148529228	148518951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_148521100_148528384
ENSMUST00000051667.14	chr9	+	2010	4	FSM	ENSMUSG00000057895.12	ENSMUST00000051667.14	2010	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	7.71722460186015	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTTTGTTTTAACTGTAT	4874	False	NA	11	True	AATAAA	-22	NA	122752136	122760093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_122752284_122754072_122754362_122755374_122755520_122758664
ENSMUST00000051671.11	chr6	-	1511	5	FSM	ENSMUSG00000029922.16	ENSMUST00000051671.11	1511	5	0	0	0	0	multi-exon	FALSE	canonical	3	1568	junction_2	1258.9473777724	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGAGTCTGTGTGAAATG	NA	False	NA	-5	True	AATAAA	-16	NA	39397292	39377693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
ENSMUST00000051672.9	chr8	-	792	5	FSM	ENSMUSG00000046718.9	ENSMUST00000051672.9	792	5	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_3	21.2176223927187	4000	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTGCTTCTAAGTTGCT	NA	False	NA	NA	False	AATAAA	-17	NA	71990100	71986898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71987125_71987315_71987437_71988429_71988470_71989002_71989079_71989771
ENSMUST00000051711.16	chr19	-	2867	19	FSM	ENSMUSG00000024969.16	ENSMUST00000051711.16	2867	19	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	106.764148164697	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	4132	False	NA	NA	False	AAGAAA	-13	NA	7318953	7254123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532_7318663_7318824
ENSMUST00000051772.10	chr19	-	1800	5	FSM	ENSMUSG00000049670.10	ENSMUST00000051772.10	1800	5	0	0	0	0	multi-exon	FALSE	canonical	2	63	junction_4	19.0574788468989	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTGTGTTATGAACTTT	4140	False	NA	-3	True	AATAAA	-21	NA	42074796	42063380	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42074635
ENSMUST00000051784.10	chr13	+	2421	7	FSM	ENSMUSG00000021532.12	ENSMUST00000051784.10	2421	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	41.7053154086303	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTGTACTCTTGTTAC	NA	False	NA	NA	False	AATAAA	-14	NA	68730366	68740457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_68730470_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
ENSMUST00000051803.8	chr19	-	1924	10	FSM	ENSMUSG00000024885.10	ENSMUST00000051803.8	1924	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_9	3.58322566591047	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACAGGTGTCTTGTCTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	3979808	3963490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_3964085_3965293_3965394_3968041_3968209_3968602_3968990_3970796_3970879_3971182_3971269_3971472_3971594_3971696_3971808_3973738_3973902_3979695
ENSMUST00000051822.13	chr9	-	1187	11	FSM	ENSMUSG00000061559.16	ENSMUST00000051822.13	1187	11	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_10	209.060852385137	5782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATTTGTGAACGTGCT	5423	False	NA	-3	True	AATAAA	-19	NA	54641801	54624442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637946_54638670_54638722_54641758
ENSMUST00000051867.7	chr8	-	2107	4	FSM	ENSMUSG00000031683.17	ENSMUST00000051867.7	2107	4	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_3	374.138417641861	4257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACAGTTGCCACCATCT	NA	False	NA	NA	False	AGTAAA	-27	NA	79547769	79533079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79547676
ENSMUST00000051925.5	chr1	-	959	6	FSM	ENSMUSG00000026701.16	ENSMUST00000051925.5	959	6	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_5	839.164012574419	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGATCGCTCGCTATACTA	NA	False	NA	-54	True	NA	NA	NA	161078736	161069167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161076928_161077040_161078591
ENSMUST00000051937.9	chr5	+	1812	4	FSM	ENSMUSG00000049907.9	ENSMUST00000051937.9	1812	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.4142135623731	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGACTGGGTCTTTATT	NA	False	NA	21	True	AATAAA	-23	NA	74355946	74360142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_74356252_74356763_74356821_74357927_74358005_74358769
ENSMUST00000052027.8	chr4	+	1452	3	FSM	ENSMUSG00000070890.4	ENSMUST00000052027.8	1452	3	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_2	2.5	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGGATGCTGGGAAATGA	NA	False	NA	NA	False	NA	NA	NA	101797603	101800380	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_101797891_101798317_101798903_101799800
ENSMUST00000052120.14	chr3	-	3432	27	FSM	ENSMUSG00000033285.16	ENSMUST00000052120.14	3432	27	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_13	50.4098586206493	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGGTTCCCTGAATAT	NA	False	NA	-15	True	ATTAAA	-15	NA	100069723	100045495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067292_100068335_100068539_100069659
ENSMUST00000052126.6	chr14	+	408	3	Antisense	novelGene_ENSMUSG00000043681.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36434	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCTGCCAGGCTCCAGGG	NA	False	NA	NA	False	NA	NA	NA	34073837	34077390	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr14_+_34074035_34075654_34075718_34077242
ENSMUST00000052140.3	chr11	-	2810	1	FSM	ENSMUSG00000050107.3	ENSMUST00000052140.3	2810	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	79	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGAGATTTGGCTTAT	NA	False	NA	-7	True	AATAAA	-17	NA	73029120	73026310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_73026300_73029100
ENSMUST00000052145.6	chr7	+	333	3	FSM	ENSMUSG00000047721.9	ENSMUST00000052145.6	333	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1142	3089	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCTGGTCTCAGTGTGC	1141	False	NA	18	True	ATTAAA	-13	NA	126295137	126295865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126295272_126295392_126295453_126295726
ENSMUST00000052209.9	chr8	+	2883	6	FSM	ENSMUSG00000031885.15	ENSMUST00000052209.9	2883	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	43.0748186299142	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATGACTCTTTATTGATA	3746	False	NA	82	True	ATTAAA	-22	NA	105897305	105944621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929180_105942535
ENSMUST00000052248.8	chr19	+	1864	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	0	0	0	0	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	98826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTTTTCTGTCATAGC	843	False	NA	NA	False	AAGAAA	-37	NA	8944404	8955843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
ENSMUST00000052249.7	chr13	+	1849	11	FSM	ENSMUSG00000041632.8	ENSMUST00000052249.7	1849	11	0	0	0	0	multi-exon	FALSE	canonical	3	414	junction_10	37.2860563750043	1613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGTGGTGTGATTT	NA	False	NA	20	True	AATAAA	-15	NA	99481293	99552070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
ENSMUST00000052283.7	chrX	-	1854	4	FSM	ENSMUSG00000046942.18	ENSMUST00000052283.7	1854	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	116.448367194316	2281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	0	True	AATAAA	-22	NA	78715041	78666836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_78668390_78671446_78671527_78685326_78685395_78714888
ENSMUST00000052325.7	chr16	-	923	6	FSM	ENSMUSG00000005732.15	ENSMUST00000052325.7	923	6	0	0	0	0	multi-exon	FALSE	canonical	1	140	junction_5	4913.40247079353	3857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTTTGAAAACCTGGACC	7798	False	NA	-19	True	AATAAA	-4	NA	18065931	18057665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18065890
ENSMUST00000052355.15	chr10	+	1267	10	FSM	ENSMUSG00000035351.17	ENSMUST00000052355.15	1267	10	0	0	0	0	multi-exon	FALSE	canonical	3	484	junction_1	64.7921653547559	4290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGTTCCTATTGTGTT	NA	False	NA	12	True	AATAAA	-20	NA	87982853	88014252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_87982935_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
ENSMUST00000052374.13	chr15	-	3033	16	FSM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	0	0	0	0	multi-exon	FALSE	canonical	3	698	junction_15	51.7762708412089	835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCCGGAAGCTTCTTTC	NA	False	NA	-9	True	AATAAA	-20	NA	81614204	81588453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
ENSMUST00000052396.7	chr18	+	2769	6	FSM	ENSMUSG00000024317.16	ENSMUST00000052396.7	2769	6	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_5	108.138799697426	680	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGTGTCTTAATTAAAA	NA	False	NA	3	True	ATTAAA	-15	NA	21135047	21161281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
ENSMUST00000052441.12	chr9	-	3236	11	FSM	ENSMUSG00000049624.15	ENSMUST00000052441.12	3236	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	5.61782876207526	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGTGTATGGTGTTT	NA	False	NA	-1	True	ATTAAA	-19	NA	78495323	78443769	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_78445582_78448180_78448272_78460215_78460364_78464738_78464872_78466292_78466452_78467969_78468089_78478303_78478391_78481931_78482020_78484311_78484546_78485792_78485990_78495155
ENSMUST00000052499.9	chr15	-	838	4	FSM	ENSMUSG00000051518.9	ENSMUST00000052499.9	838	4	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_3	66.5181679443043	10281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCAAGTGTGTGTGTGTG	NA	False	NA	-5	True	AATAAA	-25	NA	80148516	80144815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_80145332_80145497_80145596_80148183_80148319_80148427
ENSMUST00000052566.8	chr11	-	1347	6	FSM	ENSMUSG00000051232.14	ENSMUST00000052566.8	1347	6	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_5	35.6561355169065	2545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATCTTTGGTCTTAAA	1631	False	NA	-29	True	AATAAA	-21	NA	78402998	78397880	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_78398632_78399144_78399258_78399478_78399522_78400550_78400641_78401173_78401248_78402722
ENSMUST00000052590.8	chr5	-	1123	2	FSM	ENSMUSG00000029616.10	ENSMUST00000052590.8	1123	2	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0	1071	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGGTTTTCTTTTTAG	3222	False	NA	-41	True	AATAAA	-14	NA	121590559	121582818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_121583636_121590253
ENSMUST00000052631.8	chr2	+	1621	3	FSM	ENSMUSG00000042821.8	ENSMUST00000052631.8	1621	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	2	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTCAGTGTTGGGGTGGG	4755	False	NA	NA	False	AATAAA	-24	NA	167380114	167384734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_167380292_167380590_167381119_167383818
ENSMUST00000052645.13	chr3	-	1155	5	FSM	ENSMUSG00000050174.16	ENSMUST00000052645.13	1155	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	11.8743420870379	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGTTTTTCTCTACTGA	NA	False	NA	62	True	TATAAA	-29	NA	37473745	37459058	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_37459644_37463656_37463712_37466508_37466565_37470849_37471054_37473490
ENSMUST00000052691.9	chr17	+	2506	2	FSM	ENSMUSG00000050088.10	ENSMUST00000052691.9	2506	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTGGTGCTGTTACTTTA	NA	False	NA	9	True	AATAAA	-17	NA	15163445	15166198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_15163582_15163828
ENSMUST00000052708.7	chr2	-	3137	9	FSM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	0	0	0	0	multi-exon	TRUE	canonical	3	256	junction_2	30.0416377715996	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCCTGTTGTTCTCTT	NA	False	NA	0	True	AATAAA	-20	NA	129139132	129110129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_129111184_129112494_129112682_129114416_129114478_129117409_129117566_129123811_129124020_129126776_129128021_129132877_129132930_129138233_129138301_129139024
ENSMUST00000052727.5	chr6	+	1219	3	FSM	ENSMUSG00000038451.14	ENSMUST00000052727.5	1219	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	6.5	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTTCATTATTGTTTTT	NA	False	NA	19	True	AGTAAA	-22	NA	124785868	124787582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_124785994_124786189_124786933_124787231
ENSMUST00000052761.9	chrX	-	1331	13	FSM	ENSMUSG00000002010.18	ENSMUST00000052761.9	1331	13	0	0	0	0	multi-exon	FALSE	canonical	2	205	junction_10	445.162891535222	3383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72825903_72825916_72826280_72826323_72830380
ENSMUST00000052798.14	chr10	+	2000	8	FSM	ENSMUSG00000071072.13	ENSMUST00000052798.14	2000	8	0	0	0	0	multi-exon	FALSE	canonical	3	2953	junction_7	394.34461257812	6977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCAGTGTCACCTTGTTT	846	False	NA	39	True	AATAAA	-40	NA	127894822	127913141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
ENSMUST00000052832.6	chr17	-	755	4	FSM	ENSMUSG00000049760.7	ENSMUST00000052832.6	755	4	0	0	0	0	multi-exon	FALSE	canonical	3	1891	junction_3	98.6610358753647	17799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGTAGCTTGGATAGGAA	NA	False	NA	-32	True	TTTAAA	-27	NA	56916771	56914451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_56914842_56915637_56915693_56915845_56916024_56916639
ENSMUST00000052919.8	chr11	-	2184	4	FSM	ENSMUSG00000038150.8	ENSMUST00000052919.8	2184	4	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_2	8.33999733546454	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGCTTCCTG	1323	False	NA	1	True	AATAAA	-23	NA	98478194	98472081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_98473674_98473961_98474114_98474767_98474967_98477953
ENSMUST00000052999.13	chr4	+	1307	10	FSM	ENSMUSG00000028601.19	ENSMUST00000052999.13	1307	10	0	0	0	0	multi-exon	TRUE	canonical	3	713	junction_3	43.9463758530471	3967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGCTGGAATTGTTGG	NA	False	NA	24	True	AATAAA	-17	NA	108022633	108036505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
ENSMUST00000053150.8	chr9	-	374	1	FSM	ENSMUSG00000050621.8	ENSMUST00000053150.8	374	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	168885	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTATCCCTTGGCCAGG	7274	False	NA	NA	False	NA	NA	NA	114811807	114811433	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_114811400_114811800
ENSMUST00000053157.7	chr4	-	593	3	FSM	ENSMUSG00000059816.6	ENSMUST00000053157.7	593	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	6	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCATCATTACTTCTGGAA	NA	False	NA	-11	True	AATAAA	-6	NA	108240546	108224973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_108225239_108234543_108234684_108240358
ENSMUST00000053252.9	chr8	-	1212	2	FSM	ENSMUSG00000048644.9	ENSMUST00000053252.9	1212	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGCTGAGTTAACCAGTC	NA	False	NA	-16	True	AATAAA	-34	NA	4309274	4307659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_4308648_4309050
ENSMUST00000053266.11	chr1	-	3031	17	FSM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	0	0	0	0	multi-exon	FALSE	canonical	3	2257	junction_11	181.480370839383	1143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGTGTATGTGTG	NA	False	NA	-12	True	AATACA	-9	NA	20890536	20873191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
ENSMUST00000053289.11	chr13	-	700	3	FSM	ENSMUSG00000095432.10	ENSMUST00000053289.11	700	3	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_2	5.5	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTACATGCATGGCAAT	NA	False	NA	NA	False	AATAAA	-12	NA	67701257	67693073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_67693539_67694743_67694871_67701149
ENSMUST00000053298.8	chr7	+	760	4	FSM	ENSMUSG00000046364.15	ENSMUST00000053298.8	760	4	0	0	0	0	multi-exon	FALSE	canonical	3	7451	junction_1	4009.72894622844	3057	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118419	109120973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_109118430_109118791_109119201_109119674_109119850_109120807
ENSMUST00000053434.15	chr17	+	3198	10	FSM	ENSMUSG00000024457.17	ENSMUST00000053434.15	3198	10	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_5	42.9366458349457	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAGAAATTTCAAGACAGT	NA	False	NA	13	True	AATAAA	-20	NA	37148037	37170272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_37148157_37148356_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37165175_37165194_37167093_37167117_37167547_37167664_37167880_37167914_37168291
ENSMUST00000053536.5	chr11	-	3008	2	FSM	ENSMUSG00000041598.8	ENSMUST00000053536.5	3008	2	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	0	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTAGTGTCTGACTCTTC	7363	False	NA	-2	True	ATTAAA	-15	NA	113642707	113617677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_113620492_113642513
ENSMUST00000053540.11	chrX	+	930	3	FSM	ENSMUSG00000046432.13	ENSMUST00000053540.11	930	3	0	0	0	0	multi-exon	FALSE	canonical	3	4289	junction_2	392	41416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTGAAATTCAACAGTATT	NA	False	NA	NA	False	AATAAA	-32	NA	135171009	135172727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_135171151_135171558_135171632_135172011
ENSMUST00000053558.10	chr8	-	927	5	FSM	ENSMUSG00000050914.17	ENSMUST00000053558.10	927	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	16.393596310755	1063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTGCATTCTTTACTA	NA	False	NA	NA	False	ATTAAA	-22	NA	46452904	46449938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452653
ENSMUST00000053583.7	chr9	+	1838	2	FSM	ENSMUSG00000051238.7	ENSMUST00000053583.7	1838	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGACTCTGGTGGTCTG	NA	False	NA	8	True	NA	NA	NA	21867050	21869560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_21867301_21867972
ENSMUST00000053611.5	chr12	+	458	2	FSM	ENSMUSG00000043319.6	ENSMUST00000053611.5	458	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGCTTAGTATTGCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	102865574	102866785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_102865751_102866503
ENSMUST00000053657.13	chr5	-	1073	4	FSM	ENSMUSG00000044339.13	ENSMUST00000053657.13	1073	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	257.69534122465	2528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	8020	False	NA	-2	True	AATAAA	-22	NA	114266237	114261986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_114262316_114263592_114263792_114265586_114265831_114265936
ENSMUST00000053664.9	chr2	-	1977	8	FSM	ENSMUSG00000050043.17	ENSMUST00000053664.9	1977	8	0	0	0	0	multi-exon	FALSE	canonical	3	1517	junction_2	94.3986336808766	3042	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCCTTGCTGTTTTTCCT	5291	False	NA	-8	True	AATAAA	-16	NA	84508400	84501660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506088_84506203_84506440_84506502_84508194
ENSMUST00000053705.8	chr19	+	2032	2	FSM	ENSMUSG00000047379.8	ENSMUST00000053705.8	2032	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGGCTCTGTTACTCTC	202	False	NA	9	True	AATAAA	-16	NA	5088853	5091159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5090061_5090334
ENSMUST00000053729.14	chr2	-	1642	11	Fusion	ENSMUSG00000069136.5_ENSMUSG00000058835.15	novel	3360	10	NA	NA	6944	-201	intron_retention	FALSE	non_canonical	0	0	junction_1	0	978	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGTCGCCTGTCCTCTTCA	NA	False	NA	NA	False	NA	NA	NA	22830278	22785533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Fusion_chr2_-_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22819755_22819870_22825570_22825652_22829834
ENSMUST00000053753.8	chr4	-	1685	2	FSM	ENSMUSG00000050234.8	ENSMUST00000053753.8	1685	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGTGTGCACTGATGTT	NA	False	NA	0	True	AATAAA	-17	NA	127207832	127205213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_127206779_127207712
ENSMUST00000053811.10	chr12	+	2764	15	FSM	ENSMUSG00000004789.11	ENSMUST00000053811.10	2764	15	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_7	23.9123612470237	4518	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTCCGGGATCTGTGCTC	NA	False	NA	20	True	ATTAAA	-20	NA	85157606	85180862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
ENSMUST00000053862.12	chr4	-	1532	9	FSM	ENSMUSG00000028744.16	ENSMUST00000053862.12	1532	9	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_8	18.155147341732	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCCTGTTTCTGCTGCTC	NA	False	NA	-3	True	AGTAAA	-15	NA	139038019	139025838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_139026281_139027536_139027723_139028322_139028416_139028560_139028704_139029100_139029189_139029735_139029866_139033753_139034002_139035039_139035162_139037939
ENSMUST00000053872.12	chr3	+	2805	5	FSM	ENSMUSG00000046722.15	ENSMUST00000053872.12	2805	5	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	33.5885024971343	1228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACGGTTTCAGAGTAATC	1874	False	NA	21	True	AATAAA	-11	NA	95136042	95143720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95136177_95139095_95139404_95139859_95139971_95140798_95140891_95141560
ENSMUST00000053918.9	chr15	-	1339	6	FSM	ENSMUSG00000022571.10	ENSMUST00000053918.9	1339	6	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	15.2525407719501	1396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTGGACTTTAGTAGAG	NA	False	NA	-13	True	NA	NA	NA	75793409	75788325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75788929_75789085_75789179_75790100_75790314_75790521_75790702_75791077_75791143_75793224
ENSMUST00000053981.6	chrX	+	1094	3	FSM	ENSMUSG00000045237.6	ENSMUST00000053981.6	1094	3	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_1	1.5	1913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAAGTGTCTAGCTCCCT	NA	False	NA	14	True	AATAAA	-21	NA	69429482	69433023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_69429758_69431499_69431773_69432477
ENSMUST00000054002.4	chr11	-	2552	2	FSM	ENSMUSG00000053113.4	ENSMUST00000054002.4	2552	2	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_1	0	525	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTTGAGCCTTTCTTTC	NA	False	NA	NA	False	AATAAA	-30	NA	117860012	117856904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_117859145_117859700
ENSMUST00000054050.5	chr6	+	1384	2	FSM	ENSMUSG00000051124.7	ENSMUST00000054050.5	1384	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTATGATTGACTTCTTG	1289	False	NA	17	True	NA	NA	NA	48653062	48655633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_48653189_48654375
ENSMUST00000054080.15	chr6	-	2697	6	FSM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	0	0	0	0	multi-exon	FALSE	canonical	3	1893	junction_3	186.383046439315	1248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTCTCTGGTAAGAATTT	NA	False	NA	NA	False	AATAAA	-24	NA	148847965	148822532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
ENSMUST00000054125.9	chr10	+	2130	11	FSM	ENSMUSG00000025359.11	ENSMUST00000054125.9	2130	11	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	12.3385574521497	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCTTGTTGCGTTGCTGG	NA	False	NA	NA	False	NA	NA	NA	128542126	128556107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128542228_128549913_128550025_128550150_128550298_128551089_128551225_128551395_128551558_128551795_128552420_128553619_128553737_128553926_128554012_128554466_128554673_128554768_128554857_128555753
ENSMUST00000054289.13	chr17	+	1094	5	FSM	ENSMUSG00000044533.16	ENSMUST00000054289.13	1094	5	0	0	0	0	multi-exon	FALSE	canonical	3	8303	junction_1	1140.19655651997	352942	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTTTTTTTTGTCTGTCT	6237	False	NA	4	True	AATAAA	-23	NA	24939083	24940903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24939427_24939507_24939706_24939942_24940277_24940596_24940689_24940776
ENSMUST00000054310.4	chr7	+	1391	2	FSM	ENSMUSG00000044881.8	ENSMUST00000054310.4	1391	2	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_1	0	1111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTAGTCTGCTTCTCAT	7571	False	NA	NA	False	NA	NA	NA	100186306	100189576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_100186400_100188278
ENSMUST00000054311.6	chr11	+	1342	2	FSM	ENSMUSG00000047040.10	ENSMUST00000054311.6	1342	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGGTCTTATTTATACAC	NA	False	NA	NA	False	AATAAA	-15	NA	96820127	96826474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_96820336_96825340
ENSMUST00000054343.15	chr7	+	1592	5	FSM	ENSMUSG00000011096.18	ENSMUST00000054343.15	1592	5	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	63.711753232822	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGTGTGTGAGTGTGA	1400	False	NA	19	True	ATTAAA	-24	NA	44498647	44504845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44498773_44501994_44502384_44503203_44503282_44503362_44503533_44504015
ENSMUST00000054442.11	chr16	+	1884	6	FSM	ENSMUSG00000044442.12	ENSMUST00000054442.11	1884	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	18.2931681236466	891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCAGCCTTTGTGTAGC	NA	False	NA	1	True	AATAAA	-26	NA	87151072	87165630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87163026_87163169_87164352
ENSMUST00000054445.9	chr6	+	982	2	FSM	ENSMUSG00000043421.9	ENSMUST00000054445.9	982	2	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	0	1323	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTGTCCTGTTGACATG	1	True	NA	14	True	AATAAA	-21	NA	29272624	29275445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_29272810_29274648
ENSMUST00000054471.10	chr10	-	2564	7	FSM	ENSMUSG00000046567.11	ENSMUST00000054471.10	2564	7	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_5	5.07991688470939	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGTGAAATAAATCCATGAA	NA	False	NA	69	True	AATAAA	-25	NA	100425257	100408126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_100409623_100411578_100411749_100413022_100413221_100414176_100414294_100419775_100419872_100422052_100422171_100424888
ENSMUST00000054534.4	chrX	+	1178	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	0	0	0	0	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	18600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTTCACGTTAACGT	NA	False	NA	20	True	AATAAA	-21	NA	138234431	138238918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_138235157_138237570_138237800_138238694
ENSMUST00000054536.11	chr12	-	1928	7	FSM	ENSMUSG00000045679.15	ENSMUST00000054536.11	1928	7	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	25.4165300542777	325	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTAAGCTGTCATGAATT	NA	False	NA	1	True	AATAAA	-26	NA	17050119	17038648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_17039897_17042278_17042321_17043453_17043575_17045614_17045673_17047634_17047705_17047774_17047858_17049813
ENSMUST00000054544.7	chr12	-	526	2	FSM	ENSMUSG00000049751.7	ENSMUST00000054544.7	526	2	0	0	0	0	multi-exon	FALSE	canonical	3	5332	junction_1	0	179017	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCAAGCCTTGTGTTTTG	NA	False	NA	-8	True	AATAAA	-14	NA	69230857	69229514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_69229940_69230756
ENSMUST00000054565.8	chr12	+	773	8	FSM	ENSMUSG00000007867.10	ENSMUST00000054565.8	773	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	68.4433327353247	1249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATTTCTTCCATTCTGTC	NA	False	NA	6	True	AATAAA	-16	NA	86129336	86209232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_86129415_86131867_86131961_86158384_86158450_86186825_86186870_86207922_86207996_86208225_86208302_86208760_86208824_86208951
ENSMUST00000054594.15	chr7	+	1355	8	FSM	ENSMUSG00000019737.15	ENSMUST00000054594.15	1355	8	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	40.5593543401494	664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGAGAATATCAGTACT	NA	False	NA	11	True	ATTAAA	-18	NA	30014240	30018471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30016267_30016517_30017392_30017468_30018097_30018157_30018248
ENSMUST00000054607.16	chr2	-	2543	10	FSM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	366.363443645113	10788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTCTAAGTACCCTCTG	NA	False	NA	-8	True	AATAAA	-30	NA	154916417	154901229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
ENSMUST00000054636.7	chr12	-	2139	2	FSM	ENSMUSG00000049792.7	ENSMUST00000054636.7	2139	2	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	0	740	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCCCCCTGTGCTGTTC	NA	False	NA	NA	False	CATAAA	-20	NA	111679691	111675921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_111677847_111679477
ENSMUST00000054666.7	chr10	+	834	8	FSM	ENSMUSG00000045193.14	ENSMUST00000054666.7	834	8	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	141.847863313236	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCGACTCTGTGGCTTGG	6191	False	NA	NA	False	AATAAA	-17	NA	80003673	80008620	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80008247_80008347_80008470
ENSMUST00000054708.5	chr9	+	2205	9	FSM	ENSMUSG00000032123.6	ENSMUST00000054708.5	2205	9	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_1	28.7920887571569	940	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCACAGTGCTCCATTTTC	3774	False	NA	NA	False	AATAAA	-32	NA	44238141	44245197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44238503_44238848_44238970_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
ENSMUST00000054780.10	chr17	+	2028	4	FSM	ENSMUSG00000003198.11	ENSMUST00000054780.10	2028	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	17.3781471969828	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATATTTATGTGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	56199119	56205928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_56199187_56202820_56202948_56203140_56203202_56204155
ENSMUST00000054829.13	chr5	+	904	7	FSM	ENSMUSG00000029149.15	ENSMUST00000054829.13	904	7	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_6	21.1344899788631	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409049	31410541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410441
ENSMUST00000054835.15	chr13	+	2111	12	FSM	ENSMUSG00000021694.19	ENSMUST00000054835.15	2111	12	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_3	12.8281714780819	572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTTTCCTTTCCTTGT	NA	False	NA	7	True	ATTAAA	-18	NA	108295271	108331519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_108295405_108297168_108297265_108302923_108303026_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
ENSMUST00000054895.4	chr5	-	1191	3	FSM	ENSMUSG00000029699.14	ENSMUST00000054895.4	1191	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	7	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTTTTAACTGAGGTCAT	NA	False	NA	-8	True	AATAAA	-15	NA	135991181	135989077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_135990063_135990742_135990821_135991053
ENSMUST00000054912.15	chr2	+	677	4	FSM	ENSMUSG00000047459.15	ENSMUST00000054912.15	677	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	797.62021037584	12490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTGTGTTGTGTCTTTA	NA	False	NA	14	True	AGTAAA	-16	NA	155078452	155092192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_155078538_155084654_155084727_155089690_155089859_155091840
ENSMUST00000054952.4	chr11	-	1332	2	FSM	ENSMUSG00000047260.5	ENSMUST00000054952.4	1332	2	0	0	0	0	multi-exon	FALSE	canonical	3	946	junction_1	0	6573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTGCGCATGGAATTTG	NA	False	NA	-27	True	AATAAA	-25	NA	73067863	73066344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_73067578_73067764
ENSMUST00000054956.15	chr19	+	2024	11	FSM	ENSMUSG00000024776.19	ENSMUST00000054956.15	2024	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	15.5630973780928	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCGGTTGTCACATTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	34169628	34217733	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_34170032_34197586_34197667_34203941_34204160_34207492_34207569_34208830_34208927_34211360_34211719_34212609_34212735_34213675_34213814_34216175_34216289_34216902_34217003_34217416
ENSMUST00000055012.12	chr18	-	909	6	FSM	ENSMUSG00000047989.12	ENSMUST00000055012.12	909	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	344.638129057131	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTTGCTTTCTTCCCCTC	NA	False	NA	-124	True	NA	NA	NA	24254892	24239430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_24239716_24241793_24241940_24244771_24244840_24245717_24245830_24247133_24247245_24254705
ENSMUST00000055022.15	chr6	+	1820	12	FSM	ENSMUSG00000002871.15	ENSMUST00000055022.15	1820	12	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_1	17.59319928714	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGTGTGAGCTGATGCCT	NA	False	NA	12	True	AATAAA	-14	NA	88879232	88889213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_88879513_88882930_88883061_88884922_88885055_88885165_88885299_88886271_88886359_88886489_88886563_88886662_88886743_88887132_88887244_88887322_88887384_88887529_88887633_88887778_88887860_88888664
ENSMUST00000055040.13	chr11	-	1402	7	FSM	ENSMUSG00000049588.14	ENSMUST00000055040.13	1402	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	2.51661147842358	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGGGTGTATTTCATTC	4853	False	NA	NA	False	AATAAA	-23	NA	54968933	54940556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_54941385_54941977_54942076_54943173_54943294_54943720_54943823_54945797_54945872_54951286_54951372_54968838
ENSMUST00000055071.9	chr12	-	463	4	FSM	ENSMUSG00000079017.4	ENSMUST00000055071.9	463	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.24721912892465	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTGTGGTGGCTCTTT	6294	False	NA	NA	False	AAAACA	-28	NA	103409939	103408425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_103408643_103409090_103409253_103409740_103409771_103409885
ENSMUST00000055213.11	chr4	+	872	6	FSM	ENSMUSG00000028863.14	ENSMUST00000055213.11	872	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	98.9605982196955	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGGCAGCTGCCTCTTT	NA	False	NA	40	True	ACTAAA	-16	NA	124978943	125003682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125003369
ENSMUST00000055244.13	chr2	+	3648	18	FSM	ENSMUSG00000026843.16	ENSMUST00000055244.13	3648	18	0	0	0	0	multi-exon	FALSE	canonical	3	582	junction_10	50.5976051514182	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTAGTCTGTTTTGTTT	659	False	NA	29	True	AATAAA	-30	NA	31462828	31507531	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509
ENSMUST00000055245.13	chr5	-	2139	9	FSM	ENSMUSG00000035234.19	ENSMUST00000055245.13	2139	9	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_2	23.2725025512943	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTAATATCTTATTTTT	NA	False	NA	-3	True	AATAAA	-19	NA	100968831	100953057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
ENSMUST00000055261.11	chr6	+	4412	6	FSM	ENSMUSG00000043131.15	ENSMUST00000055261.11	4412	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	40.3554209493595	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCATTTATTATCTACGTC	NA	False	NA	98	True	ATTAAA	-21	NA	83302997	83320758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83303250_83306848_83307016_83309435_83309530_83311057_83311192_83315262_83315427_83317157
ENSMUST00000055316.10	chr8	-	1306	2	FSM	ENSMUSG00000078931.5	ENSMUST00000055316.10	1306	2	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_1	0	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAGAAAAAAAAAGCTCA	NA	False	NA	NA	False	NA	NA	NA	107775246	107773151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_107773904_107774692
ENSMUST00000055327.8	chr4	-	1765	6	FSM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	0	0	0	0	multi-exon	FALSE	canonical	3	1694	junction_1	130.458269189806	1309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	-4	True	AATAAA	-21	NA	41098183	41092721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
ENSMUST00000055413.13	chr16	+	1281	3	FSM	ENSMUSG00000071632.11	ENSMUST00000055413.13	1281	3	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	45.5	500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655327	18658910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18655370_18655455_18655624_18657839
ENSMUST00000055424.13	chr11	-	606	5	FSM	ENSMUSG00000025144.18	ENSMUST00000055424.13	606	5	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_4	137.848422189012	7974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604564	120601767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120604518
ENSMUST00000055539.11	chr10	+	4457	29	FSM	ENSMUSG00000039994.16	ENSMUST00000055539.11	4457	29	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_23	47.0561431934758	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTTTGTTGTCTTCCTCC	6591	False	NA	20	True	AATAAA	-20	NA	128067933	128088810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
ENSMUST00000055549.4	chr11	-	2602	2	FSM	ENSMUSG00000051650.12	ENSMUST00000055549.4	2602	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	246	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATATACTAGTATCTTGTAA	3582	False	NA	-18	True	AATAAA	-18	NA	22810488	22784864	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_22787196_22810217
ENSMUST00000055559.8	chr6	+	2351	3	FSM	ENSMUSG00000050786.9	ENSMUST00000055559.8	2351	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	7.5	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGTTATTTTTGGTTTG	NA	False	NA	15	True	AATAAA	-19	NA	49296207	49318516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_49296415_49310844_49311232_49316759
ENSMUST00000055575.8	chr4	+	943	2	FSM	ENSMUSG00000050188.9	ENSMUST00000055575.8	943	2	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	0	1778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGTGCCTGATGCCCTG	NA	False	NA	30	True	CATAAA	-21	NA	125990415	125992377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_125990603_125991621
ENSMUST00000055738.12	chrX	-	1974	3	FSM	ENSMUSG00000031431.14	ENSMUST00000055738.12	1974	3	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_2	61	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTGAGTGCATAA	NA	False	NA	NA	False	AATAAA	-26	NA	139443936	139440276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_139441857_139442853_139442906_139443594
ENSMUST00000055808.6	chr5	-	3520	2	FSM	ENSMUSG00000051391.10	ENSMUST00000055808.6	3520	2	0	0	0	0	multi-exon	FALSE	canonical	3	925	junction_1	0	2252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	-26	True	AATAAA	-14	NA	135963453	135937262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_135940506_135963176
ENSMUST00000055820.7	chr9	+	638	2	FSM	ENSMUSG00000079225.4	ENSMUST00000055820.7	638	2	0	0	0	0	multi-exon	FALSE	canonical	3	2455	junction_1	0	2181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	81559650	81560730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_81559913_81560354
ENSMUST00000055844.10	chr9	-	1987	8	Antisense	novelGene_ENSMUSG00000032387.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2062	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCGGCGGGGGGCGGGCGC	8970	False	NA	NA	False	NA	NA	NA	65567808	65537840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr9_-_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
ENSMUST00000055858.14	chr7	+	1982	6	FSM	ENSMUSG00000045411.17	ENSMUST00000055858.14	1982	6	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	215.342889364845	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGTGCTGTTTGATTCGG	NA	False	NA	24	True	ATTAAA	-24	NA	43896145	43901743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_43896248_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUST00000056078.9	chr7	-	722	3	FSM	ENSMUSG00000045948.9	ENSMUST00000056078.9	722	3	0	0	0	0	multi-exon	FALSE	canonical	3	503	junction_2	218	10519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGTGTGCGGTGTCTGT	1644	False	NA	-6	True	AATAAA	-23	NA	28441245	28439066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28439665_28440911_28440980_28441189
ENSMUST00000056147.14	chr17	-	1889	4	FSM	ENSMUSG00000062101.13	ENSMUST00000056147.14	1889	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	5.90668171555645	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATATTTATGTTGT	NA	False	NA	NA	False	AATAAA	-12	NA	56252259	56245380	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_56246994_56247928_56247990_56248185_56248313_56252171
ENSMUST00000056228.8	chr12	-	1346	2	FSM	ENSMUSG00000044408.8	ENSMUST00000056228.8	1346	2	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_1	0	2289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCTCTTTTATGGTTAA	NA	False	NA	NA	False	ATTAAA	-17	NA	54703358	54692176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_54693321_54703156
ENSMUST00000056232.7	chr7	+	3043	2	FSM	ENSMUSG00000045598.11	ENSMUST00000056232.7	3043	2	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGTGGTTATGTGTA	8302	False	NA	28	True	AATAAA	-18	NA	126832426	126837215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126832690_126834435
ENSMUST00000056288.7	chr7	+	1932	2	FSM	ENSMUSG00000045165.7	ENSMUST00000056288.7	1932	2	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	0	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTTTGTATGACCTCTG	NA	False	NA	6	True	NA	NA	NA	126690530	126693158	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126690645_126691340
ENSMUST00000056292.8	chr3	+	1655	4	FSM	ENSMUSG00000048100.14	ENSMUST00000056292.8	1655	4	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_1	76.856287243718	2573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTGAGTTTGTGTTTGC	NA	False	NA	14	True	AATAAA	-23	NA	108479014	108489385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_108479430_108480195_108480275_108485431_108485530_108488322
ENSMUST00000056370.13	chr3	-	1007	5	FSM	ENSMUSG00000028066.16	ENSMUST00000056370.13	1007	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	377.05205210952	4268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCTGTGAGGAGGTTT	NA	False	NA	-6	True	AATAAA	-16	NA	88317638	88301449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88301878_88303211_88303408_88306441_88306543_88307017_88307124_88317462
ENSMUST00000056391.15	chr19	+	2975	9	FSM	ENSMUSG00000024947.18	ENSMUST00000056391.15	2975	9	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_3	26.9153766460735	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGATGTATGTATGTGTT	614	False	NA	21	True	GATAAA	-21	NA	6385068	6390919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
ENSMUST00000056398.11	chr6	+	807	4	FSM	ENSMUSG00000044155.12	ENSMUST00000056398.11	807	4	0	0	0	0	multi-exon	FALSE	canonical	3	968	junction_1	14.522013940528	12233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTTTCTTTTCTTTCCT	1	True	NA	17	True	AATAAA	-17	NA	18848577	18854052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_18848763_18849624_18849666_18851634_18851763_18853599
ENSMUST00000056410.11	chrX	+	1862	4	FSM	ENSMUSG00000040621.15	ENSMUST00000056410.11	1862	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	17.1529071070248	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGACTGGATTTGATCTAC	NA	False	NA	NA	False	NA	NA	NA	164953449	164973508	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_164953547_164961787_164961827_164963348_164963806_164972239
ENSMUST00000056427.10	chr13	-	1610	4	FSM	ENSMUSG00000058672.8	ENSMUST00000056427.10	1610	4	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_2	19.2006944318862	620	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCCTTTTCTCTTCAACA	NA	False	NA	NA	False	AATAAA	-22	NA	34261990	34258256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_34259512_34260160_34260272_34260531_34260641_34261855
ENSMUST00000056458.14	chr4	-	757	10	FSM	ENSMUSG00000060288.14	ENSMUST00000056458.14	757	10	0	0	0	0	multi-exon	TRUE	canonical	2	32	junction_8	169.629516415942	5069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTCTGTAGTTACTATT	9644	False	NA	-3	True	AATAAA	-19	NA	119177681	119157206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_119157400_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
ENSMUST00000056521.12	chr16	+	2394	6	FSM	ENSMUSG00000044117.13	ENSMUST00000056521.12	2394	6	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_1	4.9152822909778	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATTTTCAAGATATTTG	NA	False	NA	NA	False	NA	NA	NA	13804467	13919364	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_13804758_13867246_13867371_13906809_13906884_13911752_13911868_13913767_13913851_13917656
ENSMUST00000056601.11	chr11	-	2833	22	FSM	ENSMUSG00000017288.16	ENSMUST00000056601.11	2833	22	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_11	13.2142642642469	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCATCCCTGAAGCTGG	NA	False	NA	68	True	ATTAAA	-16	NA	76070473	75937051	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_75937409_75937890_75937996_75939265_75939404_75953810_75953881_75957566_75957716_75967260_75967340_75967865_75967949_75971972_75972121_75973267_75973511_75983046_75983142_75992812_75992915_76004766_76004909_76007884_76008028_76008487_76008632_76012343_76012423_76025234_76025355_76027024_76027141_76029133_76029221_76054623_76054691_76057024_76057075_76065452_76065534_76070238
ENSMUST00000056937.12	chr5	-	804	6	FSM	ENSMUSG00000043510.13	ENSMUST00000056937.12	804	6	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_3	42.8691030930203	2403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTAATTGGAAATAGATAT	NA	False	NA	3	True	AATAAA	-24	NA	110987643	110976935	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_110977078_110978801_110978850_110982520_110982666_110983845_110983936_110984172_110984270_110987361
ENSMUST00000056965.12	chr4	-	1163	6	FSM	ENSMUSG00000055401.15	ENSMUST00000056965.12	1163	6	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	262.901958912443	2626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGTTTGAGGGCTTAC	NA	False	NA	-18	True	AATAAA	-16	NA	148236516	148230244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236398
ENSMUST00000056997.15	chr14	-	2202	10	FSM	ENSMUSG00000021982.15	ENSMUST00000056997.15	2202	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	34.1362556619393	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAACAAATAAAATGTTA	NA	False	NA	-32	True	NA	NA	NA	59835393	59801424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_59802045_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
ENSMUST00000057062.12	chr1	-	3430	14	FSM	ENSMUSG00000046836.14	ENSMUST00000057062.12	3430	14	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_3	13.1918030852137	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGCTGGATTTATGTGG	NA	False	NA	NA	False	AATAAA	-17	NA	183078536	183057915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078446
ENSMUST00000057089.13	chr11	+	3118	4	FSM	ENSMUSG00000020453.18	ENSMUST00000057089.13	3118	4	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_3	67.6576348652209	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	6452	False	NA	14	True	ATTAAA	-16	NA	3240438	3259083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3257647
ENSMUST00000057115.7	chr13	-	1942	4	FSM	ENSMUSG00000044792.8	ENSMUST00000057115.7	1942	4	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_3	1.63299316185545	1279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTCCTTTTCTTGTTGG	NA	False	NA	3	True	ATTAAA	-23	NA	59917624	59903222	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_59904818_59906703_59906810_59910555_59910610_59917437
ENSMUST00000057177.7	chr15	+	601	4	FSM	ENSMUSG00000045996.13	ENSMUST00000057177.7	601	4	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_1	282.916948944385	9847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTCTATTCAATGTCTT	132	False	NA	NA	False	ATTAAA	-15	NA	36174178	36177156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_36174360_36175132_36175203_36175529_36175623_36176899
ENSMUST00000057195.17	chr7	+	2722	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	0	0	0	0	multi-exon	FALSE	canonical	3	986	junction_1	0	922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTGAGTATGGGTAG	75	False	NA	21	True	AATAAA	-21	NA	44465511	44480236	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44465908_44477910
ENSMUST00000057208.13	chr1	+	1418	11	FSM	ENSMUSG00000060679.15	ENSMUST00000057208.13	1418	11	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_3	42.3685024517034	3193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGCCCTTTTTTTTTAAA	NA	False	NA	14	True	AATAAA	-16	NA	42890392	42944842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42937599_42937769_42938600_42938710_42942454_42942625_42944564
ENSMUST00000057216.15	chr2	+	1047	13	FSM	ENSMUSG00000027282.18	ENSMUST00000057216.15	1047	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	948.923465330875	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGATTGGTGTCTGCCTT	228	False	NA	51	True	NA	NA	NA	90677630	90695735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_90677708_90679714_90679800_90679941_90680049_90683159_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUST00000057256.5	chr15	-	3966	9	FSM	ENSMUSG00000022195.8	ENSMUST00000057256.5	3966	9	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_8	28.8809517675578	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCAAAAACAAAAAAGGAAAG	NA	False	NA	NA	False	NA	NA	NA	12824735	12808262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12823646_12823793_12824552
ENSMUST00000057257.10	chr12	+	1292	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_1	87.1563091360701	4374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATCCCGAAAAGTATT	NA	False	NA	NA	False	TATAAA	-27	NA	72132630	72147635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ENSMUST00000057288.7	chr12	+	2175	13	FSM	ENSMUSG00000020571.14	ENSMUST00000057288.7	2175	13	0	0	0	0	multi-exon	FALSE	canonical	3	2590	junction_6	180.731134715509	16343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACGTCTGTGATTATCTTC	NA	False	NA	NA	False	AATAAA	-12	NA	17316545	17334771	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
ENSMUST00000057330.15	chr11	+	2290	17	FSM	ENSMUSG00000018395.20	ENSMUST00000057330.15	2290	17	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_9	19.4950915296646	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAGAGAACTCCTTAAT	919	False	NA	21	True	AATAAA	-18	NA	53458205	53491932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661_53477758_53484200_53484358_53484745_53484927_53485103_53485215_53485652_53485779_53488785_53488840_53489120_53489190_53489533_53489659_53491837
ENSMUST00000057454.4	chr2	+	645	3	FSM	ENSMUSG00000046814.4	ENSMUST00000057454.4	645	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	2.5	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTTGTGCAGTGACTC	1208	False	NA	20	True	AATAAA	-27	NA	118998253	119002871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_118998355_119000156_119000252_119002422
ENSMUST00000057486.9	chr15	-	2509	5	FSM	ENSMUSG00000048307.9	ENSMUST00000057486.9	2509	5	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	35.6195171219375	453	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCATCGGCCATTTTCTTA	NA	False	NA	NA	False	AATAAA	-18	NA	36496966	36477813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_36479620_36484126_36484286_36485940_36486274_36496022_36496140_36496872
ENSMUST00000057495.10	chr13	+	2857	12	FSM	ENSMUSG00000035762.12	ENSMUST00000057495.10	2857	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	57.0470300398157	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAATACAATAAGAG	NA	False	NA	NA	False	NA	NA	NA	84370418	84444260	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
ENSMUST00000057500.6	chr9	-	1232	3	FSM	ENSMUSG00000051234.7	ENSMUST00000057500.6	1232	3	0	0	0	0	multi-exon	FALSE	canonical	3	1085	junction_1	10	9491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTCTTTATTTGGCGGT	3713	False	NA	0	True	ATTAAA	-35	NA	96360728	96352989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_96353906_96356010_96356059_96360460
ENSMUST00000057551.14	chr5	+	1906	8	Genic_Genomic	ENSMUSG00000106834.2	novel	1155	1	NA	NA	-12046	-681	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3124	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGACCTCCCCCAGCCCCC	NA	False	NA	NA	False	NA	NA	NA	33797398	33809918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_chr5_+_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
ENSMUST00000057576.8	chr7	-	2902	17	FSM	ENSMUSG00000034951.11	ENSMUST00000057576.8	2902	17	0	0	0	0	multi-exon	TRUE	canonical	3	174	junction_8	14.1585607937389	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGGTGTTTCCTTCTTCT	8924	False	NA	0	True	AATAAA	-17	NA	121580934	121522061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_121522692_121524646_121524791_121528409_121528525_121529752_121529837_121534880_121535022_121536176_121536364_121540392_121540459_121543000_121543118_121548967_121549123_121550385_121550514_121555152_121555352_121562360_121562484_121563423_121563507_121570502_121570672_121576489_121576607_121576838_121576988_121580639
ENSMUST00000057578.16	chr6	+	2283	9	FSM	ENSMUSG00000013736.17	ENSMUST00000057578.16	2283	9	0	0	0	0	multi-exon	FALSE	canonical	3	574	junction_1	132.149477392081	817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGTCGTTATTTCTGT	NA	False	NA	12	True	AATAAA	-21	NA	106746126	106759435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_106746218_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
ENSMUST00000057580.8	chr4	+	1003	5	FSM	ENSMUSG00000028991.16	ENSMUST00000057580.8	1003	5	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	19.0656759649376	843	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAGGCCTCTGACTATGG	NA	False	NA	16	True	AATAAA	-22	NA	148533081	148539430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_148533145_148536713_148536890_148537478_148537588_148538214_148538448_148539008
ENSMUST00000057623.14	chr10	-	3531	12	FSM	ENSMUSG00000062075.14	ENSMUST00000057623.14	3531	12	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_8	24.5238962565761	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAAGC	3111	False	NA	NA	False	NA	NA	NA	80754079	80737036	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80738735_80739045_80739157_80739283_80739404_80739764_80739873_80739948_80740223_80740386_80740608_80740719_80740846_80740914_80741086_80742984_80743111_80743218_80743376_80745742_80745880_80753797
ENSMUST00000057649.8	chr10	+	563	1	FSM	ENSMUSG00000045886.8	ENSMUST00000057649.8	563	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7365	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGGTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	43400079	43400642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_43400100_43400600
ENSMUST00000057669.16	chr7	+	1800	9	FSM	ENSMUSG00000063065.14	ENSMUST00000057669.16	1800	9	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_5	18.155147341732	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTCTGTCTGTGTAT	5216	False	NA	31	True	TATAAA	-24	NA	126358772	126364991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126358991_126359902_126360086_126362206_126362397_126362569_126362687_126362912_126363028_126363405_126363538_126363705_126363816_126363894_126364050_126364411
ENSMUST00000057716.6	chr19	-	784	5	FSM	ENSMUSG00000050623.6	ENSMUST00000057716.6	784	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	4.76969600708473	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTGCGTGGCTGCTTGC	7390	False	NA	1	True	ATTAAA	-22	NA	6902748	6899790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6900029_6900668_6900736_6900890_6900968_6902161_6902475_6902659
ENSMUST00000057795.12	chr5	-	2270	11	FSM	ENSMUSG00000029422.16	ENSMUST00000057795.12	2270	11	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_7	167.947640650293	1907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTCCATTGTATGCTAT	4323	False	NA	NA	False	AATAAA	-11	NA	123887475	123866492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123887351
ENSMUST00000057816.15	chr2	-	1849	15	FSM	ENSMUSG00000089917.8	ENSMUST00000057816.15	1849	15	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_14	14.4936650482413	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTGTGGCAGAATGTAACC	4547	False	NA	1	True	AATAAA	-23	NA	181223801	181210941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214262_181214280_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
ENSMUST00000057829.4	chr4	-	2114	2	FSM	ENSMUSG00000044018.4	ENSMUST00000057829.4	2114	2	0	0	0	0	multi-exon	FALSE	canonical	3	1281	junction_1	0	5702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTTTTAAAGTGTTATT	NA	False	NA	0	True	AATAAA	-21	NA	49521093	49512595	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_49514578_49520961
ENSMUST00000057885.13	chr5	-	738	8	FSM	ENSMUSG00000047215.15	ENSMUST00000057885.13	738	8	0	0	0	0	multi-exon	FALSE	canonical	3	5084	junction_7	3201.89202994551	317098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548787	65545706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
ENSMUST00000057907.10	chr4	-	1829	6	FSM	ENSMUSG00000029001.16	ENSMUST00000057907.10	1829	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	3.00665927567458	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTGCCCTGCGGCTTT	NA	False	NA	-6	True	AATAAA	-13	NA	148244540	148237259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_148238102_148240602_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148244199
ENSMUST00000057921.10	chr11	+	2242	5	FSM	ENSMUSG00000062421.14	ENSMUST00000057921.10	2242	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	7.43303437365925	267	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTCATGTTCTCCTGGA	NA	False	NA	31	True	AATAAA	-20	NA	103857564	103876163	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_103857654_103859904_103860072_103863778_103863890_103872519_103872645_103874413
ENSMUST00000057975.8	chr3	+	2433	2	FSM	ENSMUSG00000051444.10	ENSMUST00000057975.8	2433	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGCCATTCTGTTTTTT	1251	False	NA	7	True	AATAAA	-19	NA	37366702	37375599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_37366735_37373198
ENSMUST00000058030.10	chr4	+	2797	8	FSM	ENSMUSG00000062937.8	ENSMUST00000058030.10	2797	8	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_1	29.2609651521041	1897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGATCAGATTATACTTGA	5048	False	NA	NA	False	NA	NA	NA	89055358	89099318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
ENSMUST00000058125.9	chrX	-	866	3	FSM	ENSMUSG00000050071.9	ENSMUST00000058125.9	866	3	0	0	0	0	multi-exon	FALSE	canonical	3	4595	junction_1	588.5	80816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTGTACTCATCTTTTC	NA	False	NA	-2	True	AATAAA	-17	NA	135116262	135114720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135115333_135115652_135115730_135116085
ENSMUST00000058163.11	chr11	+	3559	18	FSM	ENSMUSG00000020280.13	ENSMUST00000058163.11	3559	18	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	15.9356404539699	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGCATTGTTTTTTTTT	NA	False	NA	10	True	ATTAAA	-17	NA	23616006	23682876	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_23616454_23617277_23617415_23622507_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678974_23679075_23681320
ENSMUST00000058183.9	chr4	-	1082	9	FSM	ENSMUSG00000050323.15	ENSMUST00000058183.9	1082	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	119.468549731718	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGTGGTCTGAGTTTT	-19	True	NA	-3	True	TTTAAA	-3	NA	11076204	11051044	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11066650_11066708_11070199_11070323_11073143_11073244_11075979
ENSMUST00000058230.13	chr3	+	1130	4	FSM	ENSMUSG00000038619.13	ENSMUST00000058230.13	1130	4	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	204.491781959298	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACCAAAACTAGACCT	400	False	NA	10	True	AATAAA	-21	NA	95532321	95539413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95532488_95534059_95534186_95535851_95536019_95538742
ENSMUST00000058245.5	chr6	+	918	5	FSM	ENSMUSG00000040242.15	ENSMUST00000058245.5	918	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	170.445005793658	1145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGTGTGCTTTTCATGGC	NA	False	NA	NA	False	AATAAA	-16	NA	146479418	146494363	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131
ENSMUST00000058265.8	chrX	-	1449	2	FSM	ENSMUSG00000048970.10	ENSMUST00000058265.8	1449	2	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	0	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTATTACTTTTCTGT	NA	False	NA	-2	True	ATTAAA	-18	NA	37723964	37719661	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_37721001_37723854
ENSMUST00000058333.10	chr7	+	694	4	FSM	ENSMUSG00000089847.9	ENSMUST00000058333.10	694	4	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_3	126.499011853848	1228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAAGTGCTTTCTTGTCT	NA	False	NA	NA	False	AATAAA	-11	NA	105289654	105291050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_105289830_105289968_105290065_105290234_105290436_105290828
ENSMUST00000058351.16	chr4	+	2371	11	FSM	ENSMUSG00000025791.19	ENSMUST00000058351.16	2371	11	0	0	0	0	multi-exon	TRUE	canonical	3	174	junction_5	14.102836594104	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTGTCGCTTTTATTC	NA	False	NA	16	True	ATTAAA	-19	NA	99786610	99844491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_99787009_99818652_99818816_99819240_99819388_99820714_99820841_99821871_99822063_99824255_99824411_99827183_99827300_99836061_99836198_99839080_99839265_99841165_99841301_99843871
ENSMUST00000058370.14	chr11	+	2778	6	FSM	ENSMUSG00000049957.15	ENSMUST00000058370.14	2778	6	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	16.7164589551735	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATGAGAACATTCTTGTT	208	False	NA	NA	False	AATAAA	-20	NA	120348940	120355184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120349105_120349437_120349572_120350867_120351091_120352541_120352625_120352831_120352912_120353090
ENSMUST00000058393.9	chr4	+	1098	4	FSM	ENSMUSG00000047613.11	ENSMUST00000058393.9	1098	4	0	0	0	0	multi-exon	FALSE	canonical	3	743	junction_1	42.5519290592879	5333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGTTCACAAAAGTGT	NA	False	NA	NA	False	AATAAA	-29	NA	154041693	154046382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_154041780_154044205_154044320_154044987_154045450_154045946
ENSMUST00000058407.6	chr11	-	434	2	FSM	ENSMUSG00000059534.9	ENSMUST00000058407.6	434	2	0	0	0	0	multi-exon	FALSE	canonical	3	8152	junction_1	0	50338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCTTTTGCACGAGTCCT	NA	False	NA	-6	True	AATAAA	-19	NA	4654342	4651972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_4652221_4654156
ENSMUST00000058437.14	chr1	-	1163	7	FSM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	0	0	0	0	multi-exon	FALSE	canonical	3	5309	junction_1	773.772953348289	254795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	-5	True	AATAAA	-25	NA	16174886	16171518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
ENSMUST00000058488.9	chr9	-	1346	3	FSM	ENSMUSG00000032353.10	ENSMUST00000058488.9	1346	3	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	7.5	786	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGGAGTGATGTGTGC	NA	False	NA	-12	True	AATAAA	-14	NA	89587121	89581258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_89582033_89584824_89585074_89586798
ENSMUST00000058639.11	chr12	-	1109	6	FSM	ENSMUSG00000049882.11	ENSMUST00000058639.11	1109	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	23.3837550449024	983	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAAGCAGCATGGTTGG	NA	False	NA	-5	True	AATAAA	-24	NA	69629884	69624401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629494
ENSMUST00000058659.9	chr15	-	1144	2	FSM	ENSMUSG00000044986.11	ENSMUST00000058659.9	1144	2	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_1	0	1907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTCTGCCTCCTTGCCC	8084	False	NA	-3	True	AATAAA	-17	NA	78290107	78283755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_78284231_78289438
ENSMUST00000058714.10	chr10	+	1816	2	FSM	ENSMUSG00000047139.10	ENSMUST00000058714.10	1816	2	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	0	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAGTCTGTTGAATTTAT	NA	False	NA	10	True	AATAAA	-19	NA	43455164	43460261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_43455319_43458599
ENSMUST00000058716.14	chr5	+	4134	23	FSM	ENSMUSG00000036817.15	ENSMUST00000058716.14	4134	23	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_7	179.419817953258	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTCTTATCTCTGCC	NA	False	NA	33	True	AATAAA	-19	NA	139186391	139235595	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ENSMUST00000058754.9	chr4	-	3429	10	FSM	ENSMUSG00000043207.11	ENSMUST00000058754.9	3429	10	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_3	24.0005143977796	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCCTGGTGTTGGGTTTGA	NA	False	NA	-1	True	ATTAAA	-20	NA	120955438	120916433	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017_120940171_120940505_120940623_120944505_120944593_120952748_120952896_120955073
ENSMUST00000058771.13	chr7	+	2898	3	FSM	ENSMUSG00000043831.13	ENSMUST00000058771.13	2898	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	19.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAACATGATTCTCCCT	NA	False	NA	NA	False	AATAAA	-16	NA	66872355	66878204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_66872378_66873356_66873640_66875611
ENSMUST00000058793.14	chr15	-	3299	9	FSM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_6	74.2839779158332	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	-11	True	AATAAA	-17	NA	83033585	83010176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
ENSMUST00000058884.10	chr16	-	2906	24	FSM	ENSMUSG00000022685.10	ENSMUST00000058884.10	2906	24	0	0	0	0	multi-exon	FALSE	canonical	1	121	junction_21	52.0035988284976	538	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCCTTTAACTGTTCTT	NA	False	NA	-7	True	ATTAAA	-16	NA	13486034	13355823	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483765_13483846_13485397_13485476_13485874
ENSMUST00000058914.10	chr15	+	1982	4	FSM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_1	4660.1984459415	6460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCATCTGGTTCATA	NA	False	NA	15	True	AATAAA	-22	NA	98927771	98935991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915
ENSMUST00000058981.3	chr3	-	1112	6	FSM	ENSMUSG00000047557.3	ENSMUST00000058981.3	1112	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_4	5.56417109729742	578	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAGTCTAATTGCATTGTA	NA	False	NA	-3	True	AATAAA	-18	NA	67371259	67365330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_67365661_67365926_67365990_67368254_67368392_67368644_67368823_67369691_67369755_67370918
ENSMUST00000059021.10	chr3	-	1749	5	FSM	ENSMUSG00000040374.14	ENSMUST00000059021.10	1749	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	14.3592304807744	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATTGTGCATTTATTTTT	NA	False	NA	0	True	AATAAA	-20	NA	5641299	5625559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5641097
ENSMUST00000059045.8	chr15	+	1796	3	FSM	ENSMUSG00000034259.9	ENSMUST00000059045.8	1796	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	330.5	3569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGACTAATGTCTTCTTT	879	False	NA	8	True	NA	NA	NA	76211596	76214877	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76211864_76213229_76213437_76213555
ENSMUST00000059057.14	chr9	-	1860	8	FSM	ENSMUSG00000050471.18	ENSMUST00000059057.14	1860	8	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	33.1724006256	932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGGCAATTTCTTTATGA	6364	False	NA	NA	False	TATAAA	-14	NA	35179101	35128315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35155909_35156003_35179018
ENSMUST00000059080.7	chr2	+	394	6	FSM	ENSMUSG00000039001.13	ENSMUST00000059080.7	394	6	0	0	0	0	multi-exon	FALSE	canonical	3	3954	junction_5	1417.02976680097	258639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTTTGCTGTTTTTAC	NA	False	NA	26	True	AATAAA	-27	NA	179899169	179900238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_179899241_179899413_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
ENSMUST00000059093.7	chr8	+	747	2	FSM	ENSMUSG00000051671.8	ENSMUST00000059093.7	747	2	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	0	2746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGCGTGCTTCTGGCA	NA	False	NA	7	True	AATAAA	-18	NA	127149253	127152172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_127149570_127151741
ENSMUST00000059099.7	chrX	-	1041	7	FSM	ENSMUSG00000015668.14	ENSMUST00000059099.7	1041	7	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_6	158.307366291724	1184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAATAAACGTGGCTTGAG	NA	False	NA	-29	True	AGTAAA	-10	NA	99669541	99666513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669421
ENSMUST00000059155.11	chr5	+	2697	5	FSM	ENSMUSG00000045294.12	ENSMUST00000059155.11	2697	5	0	0	0	0	multi-exon	FALSE	canonical	3	1125	junction_2	41.7215471908701	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGTATTCCTGAGGTT	NA	False	NA	14	True	ATTAAA	-13	NA	28276360	28283660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_28276794_28278544_28278670_28279479_28279647_28280059_28280160_28281788
ENSMUST00000059193.7	chr13	-	3336	2	FSM	ENSMUSG00000048376.7	ENSMUST00000059193.7	3336	2	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	0	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCATGCTTGGTGTCTG	NA	False	NA	NA	False	AATAAA	-3	NA	95754995	95738310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_95741446_95754794
ENSMUST00000059229.16	chr5	-	2044	6	FSM	ENSMUSG00000029500.17	ENSMUST00000059229.16	2044	6	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_2	111.169420255752	1056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTATTTGTTTTAAAGGG	NA	False	NA	-20	True	AATAAA	-18	NA	110417753	110407020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_110408304_110413377_110413509_110413605_110413695_110413776_110413903_110414952_110415132_110417517
ENSMUST00000059297.6	chrX	+	2364	4	FSM	ENSMUSG00000045427.14	ENSMUST00000059297.6	2364	4	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_3	339.283886377699	1992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATCTTGCATAGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	133502034	133507803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_133502083_133503440_133503512_133503666_133503712_133505603
ENSMUST00000059354.15	chr4	-	1640	4	FSM	ENSMUSG00000036078.17	ENSMUST00000059354.15	1640	4	0	0	0	0	multi-exon	FALSE	canonical	3	474	junction_2	54.2647829320883	3501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTTCCTTATGTGTCTAA	3747	False	NA	NA	False	AATAAA	-17	NA	41741359	41738492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_41739581_41740549_41740643_41740775_41740977_41741101
ENSMUST00000059462.12	chr6	+	2654	6	FSM	ENSMUSG00000053119.12	ENSMUST00000059462.12	2654	6	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_5	32.5490399243972	2461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTATATTATGCCTTTG	NA	False	NA	23	True	NA	NA	NA	71520780	71558563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_71521018_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624
ENSMUST00000059472.10	chr6	-	2804	9	FSM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	0	0	0	0	multi-exon	FALSE	canonical	3	591	junction_1	84.6271233116192	965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTGTCTATTACTTGT	NA	False	NA	-11	True	AATAAA	-17	NA	72416541	72409781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ENSMUST00000059482.6	chr17	+	1253	6	FSM	ENSMUSG00000050762.6	ENSMUST00000059482.6	1253	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	4.88262224629348	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAGAAAAAAAA	4531	False	NA	NA	False	NA	NA	NA	24257117	24264928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24257336_24261027_24261055_24261775_24261939_24263233_24263506_24263832_24264003_24264525
ENSMUST00000059515.8	chr13	+	2077	10	FSM	ENSMUSG00000021218.11	ENSMUST00000059515.8	2077	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	614.94494383694	2805	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTTGGTATTGAGTGTCT	NA	False	NA	35	True	AATAAA	-18	NA	3588129	3615820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_3588344_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
ENSMUST00000059582.9	chr19	-	999	5	FSM	ENSMUSG00000024667.13	ENSMUST00000059582.9	999	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	20.6079474960511	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTTTTAATAAAAGTAT	NA	False	NA	-34	True	NA	NA	NA	10533115	10527855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533062
ENSMUST00000059642.17	chr7	-	1540	7	FSM	ENSMUSG00000030591.18	ENSMUST00000059642.17	1540	7	0	0	0	0	multi-exon	FALSE	canonical	3	1581	junction_5	143.933626678719	4892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTATCCAGTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	28880126	28873612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
ENSMUST00000059658.6	chr10	-	1221	7	FSM	ENSMUSG00000050157.7	ENSMUST00000059658.6	1221	7	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	10.6991692304694	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAATTATGTCTCCTGT	4916	False	NA	NA	False	AGTAAA	-42	NA	75776506	75773556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_75774191_75774995_75775166_75775239_75775315_75775553_75775673_75775764_75775852_75776227_75776255_75776397
ENSMUST00000059692.4	chr8	-	1850	6	FSM	ENSMUSG00000031651.6	ENSMUST00000059692.4	1850	6	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_5	54.3963234051714	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	9272	False	NA	0	True	TATAAA	-19	NA	43594523	43582843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003
ENSMUST00000059743.12	chr1	+	1154	11	FSM	ENSMUSG00000034343.15	ENSMUST00000059743.12	1154	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	126.177692164661	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTGGCAATAAGAAACCC	311	False	NA	NA	False	NA	NA	NA	91178032	91213462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_91178160_91181481_91181550_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ENSMUST00000059775.15	chr17	-	1631	3	FSM	ENSMUSG00000047407.18	ENSMUST00000059775.15	1631	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_2	253.5	1703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAGCATTTTCTTGAAG	NA	False	NA	84	True	AATAAA	-26	NA	71158202	71151199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_71152268_71153166_71153394_71157866
ENSMUST00000059802.7	chr9	+	710	4	FSM	ENSMUSG00000048758.15	ENSMUST00000059802.7	710	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2185.50085792708	129992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGTGTCTGTTGTCATA	NA	False	NA	2	True	AATAAA	-18	NA	106306737	106308766	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106306839_106307168_106307214_106307506_106307572_106308267
ENSMUST00000059844.13	chr17	-	1908	6	FSM	ENSMUSG00000023973.14	ENSMUST00000059844.13	1908	6	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_4	48.1730214954387	1576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCAAAGGGGTTTTGACC	NA	False	NA	33	True	NA	NA	NA	47063140	47046630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_47047835_47048100_47048219_47048652_47048776_47054111_47054209_47058346_47058471_47062898
ENSMUST00000059849.15	chr2	-	2637	13	FSM	ENSMUSG00000013465.20	ENSMUST00000059849.15	2637	13	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_7	54.5501807716732	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGAGGAATCTGTTTGTC	NA	False	NA	NA	False	AATAAA	-20	NA	25101501	25089723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720_25100885_25101113
ENSMUST00000059954.14	chr2	-	1809	16	FSM	ENSMUSG00000017754.14	ENSMUST00000059954.14	1809	16	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_15	32.6696597268271	1652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTCTCTAGCTCTG	NA	False	NA	-1	True	NA	NA	NA	164699631	164681437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503
ENSMUST00000059970.9	chr14	-	2263	12	FSM	ENSMUSG00000034450.9	ENSMUST00000059970.9	2263	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	1.97086212624353	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTGCCCTTGAGGAAT	NA	False	NA	NA	False	ATTAAA	-16	NA	66246656	66224234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_66225144_66225630_66225722_66227827_66227993_66228478_66228629_66234272_66234350_66235008_66235117_66237282_66237469_66240039_66240131_66241530_66241626_66243285_66243412_66245487_66245590_66246493
ENSMUST00000059980.11	chr1	+	558	4	FSM	ENSMUSG00000046330.11	ENSMUST00000059980.11	558	4	0	0	0	0	multi-exon	FALSE	canonical	2	9164	junction_1	3956.18005993998	716020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTACATAGCTTGGTTT	NA	False	NA	19	True	AATAAA	-17	NA	72750448	72752972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_72750483_72750830_72750960_72751300_72751384_72752660
ENSMUST00000059983.10	chr6	-	820	3	FSM	ENSMUSG00000050732.10	ENSMUST00000059983.10	820	3	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	0.5	3562	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGGCGCTTTACTCCTGTG	8093	False	NA	-18	True	AATAAA	-25	NA	72367686	72362205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72362637_72365244_72365404_72367456
ENSMUST00000060049.8	chr5	-	2073	5	FSM	ENSMUSG00000079555.3	ENSMUST00000060049.8	2073	5	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_4	45.778679535347	823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTGTGTTTTTGTTTTT	9954	False	NA	0	True	NA	NA	NA	34326871	34311223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_34311451_34320866_34321096_34323259_34323700_34324748_34325788_34326733
ENSMUST00000060067.12	chr16	+	2648	12	FSM	ENSMUSG00000004069.18	ENSMUST00000060067.12	2648	12	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_10	248.960018695956	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	35	True	TTTAAA	-8	NA	4501933	4525559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4523707_4523825_4524431
ENSMUST00000060101.10	chrX	-	1250	3	FSM	ENSMUSG00000051579.11	ENSMUST00000060101.10	1250	3	0	0	0	0	multi-exon	FALSE	canonical	3	703	junction_2	29	5786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTGGTTAAGACTTGGTC	NA	False	NA	NA	False	NA	NA	NA	135073091	135070829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135071799_135072384_135072455_135072880
ENSMUST00000060108.7	chrX	-	2699	7	FSM	ENSMUSG00000044148.7	ENSMUST00000060108.7	2699	7	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_4	24.9377001523575	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTACAGTTTTTAATTTC	NA	False	NA	-3	True	AATAAA	-25	NA	12539907	12521117	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_12522726_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
ENSMUST00000060133.8	chr8	+	491	3	FSM	ENSMUSG00000048478.8	ENSMUST00000060133.8	491	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	0.5	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGGGATCCTTTCCTGTG	NA	False	NA	NA	False	AATAAA	-15	NA	123939622	123948783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_123939737_123939826_123939977_123948556
ENSMUST00000060167.6	chr8	+	617	3	FSM	ENSMUSG00000044287.7	ENSMUST00000060167.6	617	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1.5	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTTCCTTTCTCCTGGC	NA	False	NA	NA	False	ATTAAA	-21	NA	106620198	106621655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106620300_106620997_106621113_106621254
ENSMUST00000060212.13	chr10	+	2007	8	FSM	ENSMUSG00000019810.16	ENSMUST00000060212.13	2007	8	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_7	35.0731015021425	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTCCCTCATATTCA	NA	False	NA	38	True	AATGAA	-24	NA	13376744	13391287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_13377118_13378814_13379003_13381482_13381823_13382449_13382661_13382978_13383170_13388361_13388471_13390450_13390619_13390860
ENSMUST00000060226.11	chr5	+	2074	4	FSM	ENSMUSG00000029390.14	ENSMUST00000060226.11	2074	4	0	0	0	0	multi-exon	FALSE	canonical	3	3477	junction_2	89.3395520223577	1060	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGTTTTATATTAATG	NA	False	NA	12	True	AATAAA	-22	NA	124678757	124688569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124679105_124681034_124681228_124684958_124685067_124687143
ENSMUST00000060301.6	chr15	-	791	4	FSM	ENSMUSG00000044678.12	ENSMUST00000060301.6	791	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_3	10.2740233382816	1185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTTGGTTTGACTTCTG	776	False	NA	-2	True	ATTAAA	-18	NA	74671835	74668722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_74669121_74670383_74670483_74671267_74671345_74671618
ENSMUST00000060417.11	chr11	-	1463	7	FSM	ENSMUSG00000044328.14	ENSMUST00000060417.11	1463	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	13.984117975602	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTTGGGAGATTGTCTCT	NA	False	NA	1	True	ATTAAA	-21	NA	77404196	77398924	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_77399204_77399282_77399818_77399901_77400100_77400423_77400553_77403478_77403521_77403722_77403792_77403985
ENSMUST00000060419.2	chr4	-	1445	2	FSM	ENSMUSG00000046623.9	ENSMUST00000060419.2	1445	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGTAGTCAGGCGGAGAA	4504	False	NA	-10	True	AATAAA	-17	NA	127247874	127244878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_127246275_127247825
ENSMUST00000060433.10	chr7	+	1519	3	FSM	ENSMUSG00000045752.14	ENSMUST00000060433.10	1519	3	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	1	1205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGGCTTTTTCCGGGC	NA	False	NA	22	True	AATAAA	-21	NA	142622985	142624830	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_142623251_142623491_142623588_142623672
ENSMUST00000060447.13	chr2	-	968	7	FSM	ENSMUSG00000051730.16	ENSMUST00000060447.13	968	7	0	0	0	0	multi-exon	FALSE	canonical	3	432	junction_3	75.5058864519111	4612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCATTTTCTCTTTTCTT	6806	False	NA	-5	True	AATAAA	-34	NA	69715959	69701541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_69701661_69702075_69702126_69704227_69704280_69709445_69709529_69711110_69711293_69711640_69711756_69715592
ENSMUST00000060455.15	chr2	+	1569	11	FSM	ENSMUSG00000023572.17	ENSMUST00000060455.15	1569	11	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_6	15.0811140172071	384	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTGTCCTCTGAAGT	NA	False	NA	21	True	AATAAA	-30	NA	120838883	120847385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_120839091_120839198_120839259_120839523_120839604_120840307_120840390_120841914_120842012_120842163_120842238_120842833_120842911_120843179_120843458_120844438_120844500_120846611_120846659_120846879
ENSMUST00000060608.13	chr1	+	2223	13	FSM	ENSMUSG00000049439.14	ENSMUST00000060608.13	2223	13	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	9.38083151964686	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGGATTGTTTTGTTT	NA	False	NA	28	True	AATAAA	-16	NA	60382481	60427219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_60382617_60391279_60391330_60392067_60392235_60393672_60393816_60402348_60402517_60405807_60405887_60410379_60410496_60411748_60411804_60415225_60415347_60418532_60418645_60421562_60421628_60426063_60426154_60426297
ENSMUST00000060634.14	chr6	-	1224	9	FSM	ENSMUSG00000051169.15	ENSMUST00000060634.14	1224	9	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	50.3374549912885	969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAAGCAGATGTTTACC	NA	False	NA	-18	True	AATAAA	-32	NA	113396280	113392289	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_113392684_113393267_113393394_113393749_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
ENSMUST00000060645.13	chr2	-	1586	3	FSM	ENSMUSG00000078923.11	ENSMUST00000060645.13	1586	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	1070	318	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGGTGGTTTTATTTTAA	9441	False	NA	NA	False	AATAAA	-22	NA	167473892	167449763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_167451168_167459748_167459898_167473859
ENSMUST00000060738.9	chr3	-	677	3	FSM	ENSMUSG00000044080.10	ENSMUST00000060738.9	677	3	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_1	21.5	3157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAATGTCTGTACCCTCTG	NA	False	NA	-3	True	AATAAA	-20	NA	90421699	90418340	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_90418672_90419302_90419457_90421507
ENSMUST00000060833.14	chr1	+	2515	7	FSM	ENSMUSG00000000544.15	ENSMUST00000060833.14	2515	7	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_6	19.1398362932741	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	10	True	AATAAA	-19	NA	165957806	165994079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
ENSMUST00000060834.12	chr7	+	982	7	FSM	ENSMUSG00000042831.14	ENSMUST00000060834.12	982	7	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_5	88.8144132446981	1693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	9	True	AATAAA	-16	NA	30008141	30013729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30012015_30012133_30013343
ENSMUST00000060895.6	chr11	-	2044	10	FSM	ENSMUSG00000001891.17	ENSMUST00000060895.6	2044	10	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_7	61.1714853284106	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGCTGTCTAGTGCTCA	NA	False	NA	-7	True	AATAAA	-21	NA	21321201	21271672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21303348_21303457_21304278_21304407_21321014
ENSMUST00000060913.8	chr1	+	1314	2	FSM	ENSMUSG00000047067.8	ENSMUST00000060913.8	1314	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCGAGTTGCTCTTTATG	2855	False	NA	NA	False	AATAAA	-14	NA	92834702	92836157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_92835146_92835286
ENSMUST00000060956.13	chr11	+	628	4	FSM	ENSMUSG00000049299.15	ENSMUST00000060956.13	628	4	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_3	212.171314429323	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	16	True	AATAAA	-25	NA	69214900	69216619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69215083_69215220_69215292_69215649_69215789_69216383
ENSMUST00000060987.15	chr10	+	1071	6	FSM	ENSMUSG00000035242.16	ENSMUST00000060987.15	1071	6	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_2	2881.68367452085	31845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTGTGTCCTGCTGC	NA	False	NA	19	True	AATAAA	-19	NA	80662489	80665124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80662740_80664070_80664126_80664129_80664217_80664294_80664468_80664544_80664631_80664704
ENSMUST00000060991.6	chr10	-	1556	6	FSM	ENSMUSG00000006736.10	ENSMUST00000060991.6	1556	6	0	0	0	0	multi-exon	FALSE	canonical	3	545	junction_1	41.1698919114442	1030	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTCTTGTTTTCCTGTA	NA	False	NA	0	True	AATAAA	-15	NA	126906133	126903148	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_126904060_126904137_126904252_126904348_126904481_126904776_126904858_126905214_126905383_126905983
ENSMUST00000060992.6	chr11	+	1773	7	FSM	ENSMUSG00000020458.17	ENSMUST00000060992.6	1773	7	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	322.410409605866	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29668562	29692916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_29668883_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
ENSMUST00000061052.12	chr17	-	1452	13	FSM	ENSMUSG00000024426.18	ENSMUST00000061052.12	1452	13	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_5	27.2308801424657	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACTTGTCATTATTCAAA	NA	False	NA	2	True	AATAAA	-38	NA	36220967	36208486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUST00000061073.2	chr17	-	957	1	FSM	ENSMUSG00000051639.4	ENSMUST00000061073.2	957	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	654	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCAGAGCTGTCTGGATT	NA	False	NA	NA	False	NA	NA	NA	6172439	6171482	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_6171500_6172400
ENSMUST00000061086.9	chr19	+	927	2	FSM	ENSMUSG00000045826.10	ENSMUST00000061086.9	927	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCACTCTTGTGTCCCG	388	False	NA	NA	False	NA	NA	NA	4204604	4206750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4204703_4205921
ENSMUST00000061118.11	chr6	+	1922	10	FSM	ENSMUSG00000045100.12	ENSMUST00000061118.11	1922	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	7.6610285226392	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGCCTCTCAGAAGCAG	NA	False	NA	NA	False	AATAAA	-36	NA	94477311	94581653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701_94512750_94553314_94553360_94569392_94569463_94575360_94575426_94576159_94576234_94580532
ENSMUST00000061135.8	chr4	+	1589	3	FSM	ENSMUSG00000039693.12	ENSMUST00000061135.8	1589	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	140.5	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTACACTGTGTATGT	18	False	NA	14	True	NA	NA	NA	48539934	48561918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_48539998_48552379_48552831_48560843
ENSMUST00000061158.5	chr2	+	935	8	FSM	ENSMUSG00000051154.12	ENSMUST00000061158.5	935	8	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_2	22.7909756576714	2202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTTGGAGTTTGTGTG	60	False	NA	37	True	AATAAA	-31	NA	18677233	18681042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_18677415_18678705_18678818_18678935_18679000_18679091_18679127_18679466_18679528_18679619_18679677_18679760_18679821_18680677
ENSMUST00000061242.8	chr11	-	1800	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	0	0	0	0	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	6545	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	1847	False	NA	-4	True	AATAAA	-15	NA	59119096	59102239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
ENSMUST00000061251.6	chr5	-	579	2	FSM	ENSMUSG00000072694.9	ENSMUST00000061251.6	579	2	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	0	1263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTTTTGGCGTCCTTCT	750	False	NA	-3	True	NA	NA	NA	114952006	114950853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_114951267_114951840
ENSMUST00000061295.7	chr15	+	1564	3	FSM	ENSMUSG00000038009.8	ENSMUST00000061295.7	1564	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	3.5	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCACGGAATCCTAGCCCA	4023	False	NA	3	True	AATAAA	-21	NA	98997292	99002618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_98997482_98998703_98999657_99002196
ENSMUST00000061324.6	chr10	+	1998	5	FSM	ENSMUSG00000019977.17	ENSMUST00000061324.6	1998	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	490.144366488079	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTTTGCATGTTATTTA	NA	False	NA	NA	False	AATAAA	-21	NA	21171916	21187105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21185641
ENSMUST00000061437.5	chr2	+	1535	10	FSM	ENSMUSG00000039041.16	ENSMUST00000061437.5	1535	10	0	0	0	0	multi-exon	FALSE	canonical	3	1931	junction_6	170.679108342794	4569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATGGTCTGGGCCTGTGTT	NA	False	NA	2	True	AATAAA	-22	NA	179813277	179818079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_179813482_179813826_179814041_179814648_179814766_179815702_179815827_179816101_179816189_179816657_179816740_179816952_179817186_179817390_179817549_179817646_179817750_179817866
ENSMUST00000061481.7	chr11	-	1243	5	FSM	ENSMUSG00000049291.7	ENSMUST00000061481.7	1243	5	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_3	3.57071421427143	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATGCCTCAGAGCTC	NA	False	NA	NA	False	ATTAAA	-9	NA	59266483	59263494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_59263997_59264251_59264395_59264991_59265264_59265982_59266146_59266320
ENSMUST00000061522.8	chr18	-	1451	4	FSM	ENSMUSG00000044595.11	ENSMUST00000061522.8	1451	4	0	0	0	0	multi-exon	TRUE	canonical	3	43	junction_2	7.76029781788188	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTGTCTGCTTGGTAT	NA	False	NA	-8	True	ATTAAA	-14	NA	36899251	36896725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_36897541_36898148_36898611_36898945_36899064_36899195
ENSMUST00000061703.10	chr17	+	644	5	FSM	ENSMUSG00000045257.11	ENSMUST00000061703.10	644	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	10.1242283656583	983	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTTTTTGAATTATGTA	NA	False	NA	12	True	AATAAA	-15	NA	80597640	80604902	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_80597767_80599753_80599808_80601898_80602006_80602941_80603079_80604682
ENSMUST00000061706.7	chr3	-	1640	5	FSM	ENSMUSG00000048581.13	ENSMUST00000061706.7	1640	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	6.68487097856047	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTTCTGAGATCACTC	NA	False	NA	NA	False	AATAAA	-15	NA	63836893	63822104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_63823160_63827621_63827783_63832754_63832903_63834684_63834745_63836677
ENSMUST00000061755.9	chrX	-	3604	9	FSM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	0	0	0	0	multi-exon	FALSE	canonical	3	893	junction_3	45.9604109533411	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAATTTGCTCACATTTTT	NA	False	NA	-22	True	AATAAA	-19	NA	37545331	37508383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
ENSMUST00000061786.6	chr11	+	1597	6	FSM	ENSMUSG00000050270.13	ENSMUST00000061786.6	1597	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	4.45421149026402	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAATTACTGGGGAGAAT	3918	False	NA	NA	False	NA	NA	NA	66915979	66926138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_66916098_66916734_66916765_66920791_66920853_66921887_66922012_66923006_66923067_66924934
ENSMUST00000061826.3	chr3	-	2028	3	FSM	ENSMUSG00000043300.3	ENSMUST00000061826.3	2028	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	5	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTTTCTCGATGTCA	NA	False	NA	1	True	ATTAAA	-41	NA	69506293	69481490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_69483294_69486658_69486725_69506134
ENSMUST00000061891.11	chr2	+	1076	3	FSM	ENSMUSG00000044991.11	ENSMUST00000061891.11	1076	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	20.5	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGACTCAGTCTATTTC	NA	False	NA	27	True	NA	NA	NA	132528850	132592975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_132528902_132533869_132534052_132592132
ENSMUST00000061895.16	chr5	-	2183	8	FSM	ENSMUSG00000023452.20	ENSMUST00000061895.16	2183	8	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_2	53.5235976948867	1213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTAGCTTTGTATTTTGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	32942990	32893644	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
ENSMUST00000061938.14	chr11	-	819	2	FSM	ENSMUSG00000057534.14	ENSMUST00000061938.14	819	2	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	0	3971	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTCTCGCGTCATACT	6819	False	NA	0	True	AATAAA	-26	NA	88857743	88855483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_88856100_88857540
ENSMUST00000061970.12	chrX	+	3379	15	FSM	ENSMUSG00000031337.17	ENSMUST00000061970.12	3379	15	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_14	28.3207755284104	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCAGGGCTATGACTGT	NA	False	NA	16	True	AATAAA	-24	NA	70258611	70358901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
ENSMUST00000061973.5	chr9	-	1084	2	FSM	ENSMUSG00000049734.10	ENSMUST00000061973.5	1084	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGCCGCCTCTGCTTC	NA	False	NA	1	True	AATAAA	-18	NA	108888802	108887000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_108887997_108888714
ENSMUST00000061995.10	chr10	-	1583	2	FSM	ENSMUSG00000051346.10	ENSMUST00000061995.10	1583	2	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_1	0	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTGTCTATAAAATTGC	NA	False	NA	0	True	AATAAA	-41	NA	128047676	128045776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128047261_128047577
ENSMUST00000062047.6	chr2	-	1754	2	FSM	ENSMUSG00000027459.17	ENSMUST00000062047.6	1754	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGACTCTTCTCTGC	NA	False	NA	-1	True	AATAAA	-22	NA	151822139	151811317	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_151812845_151821912
ENSMUST00000062148.9	chr2	+	912	1	FSM	ENSMUSG00000042814.9	ENSMUST00000062148.9	912	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2328	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATCGGGGTGTTGTAAC	NA	False	NA	101	True	AATAAA	-23	NA	152528954	152529866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_152529000_152529900
ENSMUST00000062211.4	chr2	+	2628	22	FSM	ENSMUSG00000046338.5	ENSMUST00000062211.4	2628	22	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	53.4925768898164	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	5001	False	NA	14	True	AATAAA	-25	NA	127267118	127278012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_127267142_127269160_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
ENSMUST00000062350.15	chr5	+	2252	5	FSM	ENSMUSG00000037017.16	ENSMUST00000062350.15	2252	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	46.7566840141599	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGCGTCTCAGGACTGT	NA	False	NA	3	True	AATAAA	-12	NA	138115164	138132475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_138115251_138116097_138116183_138123239_138123953_138124715_138124909_138131300
ENSMUST00000062356.7	chr4	+	1605	2	FSM	ENSMUSG00000047945.7	ENSMUST00000062356.7	1605	2	0	0	0	0	multi-exon	FALSE	canonical	3	8029	junction_1	0	1140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTGGTCTTCTGGGGT	NA	False	NA	24	True	AATAAA	-24	NA	129407373	129409778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129407710_129408509
ENSMUST00000062389.6	chr19	+	1566	9	FSM	ENSMUSG00000024805.17	ENSMUST00000062389.6	1566	9	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	19.6580136331217	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAACCCAAAATGCC	NA	False	NA	-6	True	AATAAA	-6	NA	36387147	36433592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_36387310_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36433020
ENSMUST00000062405.8	chr11	-	1611	2	FSM	ENSMUSG00000049892.8	ENSMUST00000062405.8	1611	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCTTTGCTTTTAGGTT	NA	False	NA	NA	False	AATAAA	-20	NA	59855770	59854006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_59855193_59855345
ENSMUST00000062530.5	chr11	+	1910	3	FSM	ENSMUSG00000043372.13	ENSMUST00000062530.5	1910	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	11.5	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAGAACTTGTGGCCTG	NA	False	NA	-10	True	NA	NA	NA	103024170	103030702	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_103024284_103024860_103024968_103029012
ENSMUST00000062542.5	chrX	+	1572	2	FSM	ENSMUSG00000046180.12	ENSMUST00000062542.5	1572	2	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	0	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCAGCAGTGTTTGTTC	NA	False	NA	13	True	AATAAA	-18	NA	57956820	57965664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_57956922_57964193
ENSMUST00000062601.14	chr3	-	624	5	FSM	ENSMUSG00000062006.13	ENSMUST00000062601.14	624	5	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_4	3512.03875085398	272553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTTATCTGTGATTTG	NA	False	NA	-11	True	AATAAA	-20	NA	130523986	130520479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523769
ENSMUST00000062613.12	chr8	-	2463	3	FSM	ENSMUSG00000050052.13	ENSMUST00000062613.12	2463	3	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_2	12.5	963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTAGTGTGTATATTTA	4780	False	NA	-4	True	ATTAAA	-18	NA	14024777	14002007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_14004136_14005719_14005818_14024540
ENSMUST00000062626.4	chr6	+	3007	2	FSM	ENSMUSG00000049232.4	ENSMUST00000062626.4	3007	2	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	0	929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGATGACTTTTTCTGAA	NA	False	NA	9	True	NA	NA	NA	59185854	59189018	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_59186167_59186323
ENSMUST00000062629.5	chr14	-	997	9	FSM	ENSMUSG00000047911.7	ENSMUST00000062629.5	997	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	2.75850956133924	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCTCCCTCTGCCTCCCCC	NA	False	NA	NA	False	AATAAA	-15	NA	70890524	70884741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_70884990_70885076_70885111_70885484_70885526_70885699_70885852_70886910_70887005_70889562_70889677_70889768_70889855_70889971_70890136_70890460
ENSMUST00000062672.7	chr2	-	1042	2	FSM	ENSMUSG00000049950.7	ENSMUST00000062672.7	1042	2	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	0	1745	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTAGGATCCTGCATGGA	2317	False	NA	-15	True	AATAAA	-18	NA	3333680	3329985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_3330911_3333563
ENSMUST00000062678.11	chr10	-	1984	13	FSM	ENSMUSG00000061032.10	ENSMUST00000062678.11	1984	13	0	0	0	0	multi-exon	FALSE	canonical	3	782	junction_1	71.0948115000119	5935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTGCTTCTCCCATTT	NA	False	NA	-19	True	AATAAA	-19	NA	78248877	78236219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_78236819_78237683_78237801_78238258_78238279_78238443_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399_78241530_78244246_78244309_78244967_78245054_78246799_78246858_78247237_78247321_78248653
ENSMUST00000062755.10	chr6	+	1764	4	FSM	ENSMUSG00000042992.16	ENSMUST00000062755.10	1764	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	6.37704215656966	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTGATCTGATTCTAAT	NA	False	NA	31	True	ATTAAA	-32	NA	134617902	134688150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_134618221_134621291_134621436_134662926_134663085_134687006
ENSMUST00000062789.15	chr14	-	2444	8	FSM	ENSMUSG00000044350.15	ENSMUST00000062789.15	2444	8	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	13.9737362978714	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTATCCATTCCTTT	NA	False	NA	1	True	NA	NA	NA	77274081	77261639	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_77262415_77266967_77267129_77268176_77268403_77270625_77270792_77271444_77271624_77272232_77272846_77273251_77273431_77273936
ENSMUST00000062802.5	chr4	+	465	3	FSM	ENSMUSG00000045854.5	ENSMUST00000062802.5	465	3	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_2	3	1738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTTGGAATCCTCAATTG	-15	True	NA	22	True	ATTAAA	-22	NA	32800252	32801383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_32800336_32800609_32800751_32801142
ENSMUST00000062824.12	chr4	+	991	3	FSM	ENSMUSG00000048772.16	ENSMUST00000062824.12	991	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	3.5	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTTATCTATCCTGGGG	NA	False	NA	NA	False	AATAAA	-18	NA	117109147	117125777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_117109332_117123056_117123173_117125086
ENSMUST00000062904.11	chr4	+	3151	16	FSM	ENSMUSG00000039768.17	ENSMUST00000062904.11	3151	16	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_7	69.5258864660415	1703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGGCTATGTGGCTT	9070	False	NA	NA	False	NA	NA	NA	152018147	152066594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
ENSMUST00000063042.11	chr9	+	2396	16	FSM	ENSMUSG00000045594.11	ENSMUST00000063042.11	2396	16	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_2	39.3725228497687	757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGGGTCCTGTCATTAA	NA	False	NA	24	True	AATAAA	-15	NA	114230143	114303445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
ENSMUST00000063117.10	chr12	+	1656	9	FSM	ENSMUSG00000021033.12	ENSMUST00000063117.10	1656	9	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_5	40.5555175037873	727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTTTTGTCATGGACAA	NA	False	NA	13	True	NA	NA	NA	87194491	87211497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
ENSMUST00000063199.13	chr1	-	2947	20	FSM	ENSMUSG00000026594.15	ENSMUST00000063199.13	2947	20	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_5	55.0008310186526	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTCTTGTATGACTTCA	NA	False	NA	-31	True	AATAAA	-38	NA	156767101	156635685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
ENSMUST00000063204.9	chr10	-	745	5	FSM	ENSMUSG00000051736.9	ENSMUST00000063204.9	745	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	5.93190525885234	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGACTCTTCCATTTTA	NA	False	NA	-2	True	AATAAA	-29	NA	39009902	38994799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_38995031_38996253_38996393_38998172_38998332_39008242_39008375_39009818
ENSMUST00000063249.9	chr7	+	2155	17	FSM	ENSMUSG00000051768.10	ENSMUST00000063249.9	2155	17	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_4	31.1527862919194	878	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGTTTCTCTCTTAGGAG	NA	False	NA	7	True	AATAAA	-19	NA	24246574	24272863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_24246785_24247214_24247308_24259160_24259278_24264960_24265120_24265643_24265719_24265813_24265926_24266282_24266393_24266463_24266570_24266738_24266998_24267234_24267352_24269640_24269735_24269873_24270004_24270296_24270352_24270439_24270577_24271633_24271725_24272478_24272555_24272649
ENSMUST00000063251.3	chr2	-	488	3	FSM	ENSMUSG00000051769.3	ENSMUST00000063251.3	488	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	2.5	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTATGTAATAACTGTTT	NA	False	NA	NA	False	ATTAAA	-38	NA	164042050	164040782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_164040933_164041577_164041737_164041871
ENSMUST00000063262.11	chr5	-	2254	6	FSM	ENSMUSG00000058291.15	ENSMUST00000063262.11	2254	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	25.9584283037321	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTTGATCTTTGTTTG	1752	False	NA	-9	True	AATAAA	-10	NA	138618002	138604381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138614731_138614822_138615316_138615430_138617870
ENSMUST00000063324.14	chr7	-	553	4	FSM	ENSMUSG00000051811.15	ENSMUST00000063324.14	553	4	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_1	73.0677007226099	11398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756093	4754790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4754975_4755059_4755161_4755722_4755849_4755951
ENSMUST00000063339.14	chr15	-	2718	8	FSM	ENSMUSG00000001288.16	ENSMUST00000063339.14	2718	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	9.19183310979738	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCGGGTGTGGATCCCTC	NA	False	NA	-2	True	AATAAA	-14	NA	102154935	102143374	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_102144659_102147239_102147399_102147824_102148030_102148292_102148470_102148562_102148724_102149492_102149635_102150270_102150420_102154494
ENSMUST00000063414.9	chr15	+	3229	13	FSM	ENSMUSG00000051864.11	ENSMUST00000063414.9	3229	13	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_12	8.71779788708135	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTTTTTATTGCATT	NA	False	NA	8	True	AATAAA	-17	NA	86098659	86382704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_86098838_86118930_86118988_86119716_86120055_86123317_86123495_86176334_86176406_86183847_86183977_86185746_86185810_86195927_86196043_86235854_86235965_86250805_86250882_86275277_86275406_86333392_86333489_86381013
ENSMUST00000063417.11	chr17	+	2288	8	Antisense	novelGene_ENSMUSG00000024097.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGAGGCCGGAGTCGC	NA	False	NA	NA	False	NA	NA	NA	80507508	80514734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr17_+_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUST00000063507.11	chrX	-	4227	28	FSM	ENSMUSG00000031139.17	ENSMUST00000063507.11	4227	28	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_27	54.2283947104	736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	59224449	59101315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
ENSMUST00000063520.15	chr16	+	3557	5	FSM	ENSMUSG00000022698.18	ENSMUST00000063520.15	3557	5	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_1	525.255652040033	1608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTGATCTGTCTGTAACT	NA	False	NA	17	True	AATAAA	-17	NA	43960248	43982835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_43960475_43976775_43976910_43977436_43977557_43978242_43978310_43979825
ENSMUST00000063574.7	chr17	+	1192	6	FSM	ENSMUSG00000015126.10	ENSMUST00000063574.7	1192	6	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_2	34.9685573050991	2437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4603	False	NA	28	True	AATAAA	-18	NA	25459143	25461772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25459339_25459417_25459638_25460037_25460232_25460661_25460836_25461132_25461197_25461427
ENSMUST00000063641.11	chr16	+	517	4	FSM	ENSMUSG00000051989.12	ENSMUST00000063641.11	517	4	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	48.3482735529983	1720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTCTGCATTCTCTCT	NA	False	NA	26	True	AATAAA	-16	NA	92098173	92109929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_92098232_92102175_92102286_92107688_92107858_92109749
ENSMUST00000063661.13	chr16	-	3896	15	FSM	ENSMUSG00000052459.14	ENSMUST00000063661.13	3896	15	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_14	86.121532541792	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGCAGTTCTCTATTTA	NA	False	NA	-11	True	AATATA	-17	NA	43959559	43906007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959310
ENSMUST00000063683.8	chr17	-	2312	4	FSM	ENSMUSG00000052031.9	ENSMUST00000063683.8	2312	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	227.371941980535	848	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACACACTGTTCCATTCA	NA	False	NA	-19	True	AATAAA	-19	NA	7228555	7222409	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_7224424_7225052_7225168_7228135_7228190_7228426
ENSMUST00000063814.15	chr18	-	2289	7	FSM	ENSMUSG00000052102.16	ENSMUST00000063814.15	2289	7	0	0	0	0	multi-exon	FALSE	canonical	3	1055	junction_1	137.188434886716	1892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAATGTGTCTTTTGT	NA	False	NA	-30	True	ATTAAA	-13	NA	38472056	38460610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
ENSMUST00000063817.7	chr17	+	753	5	FSM	ENSMUSG00000062691.11	ENSMUST00000063817.7	753	5	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	562.646592009585	6200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTGTGGGTCTGCAG	NA	False	NA	NA	False	AATAAA	-22	NA	79223945	79227735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_79224123_79225785_79225902_79226484_79226530_79227187_79227273_79227405
ENSMUST00000063879.13	chr10	-	1654	6	FSM	ENSMUSG00000052151.13	ENSMUST00000063879.13	1654	6	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	6.89927532426414	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCATGTTGATTTTTCAA	NA	False	NA	0	True	TATAAA	-22	NA	79369630	79362263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366863_79369457
ENSMUST00000063902.14	chr7	-	1241	10	FSM	ENSMUSG00000030929.18	ENSMUST00000063902.14	1241	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	31.084115271666	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAAAATAATTCATT	NA	False	NA	NA	False	NA	NA	NA	119393190	119371160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_119371568_119371767_119371843_119385961_119386051_119386626_119386709_119386956_119387058_119389456_119389614_119390323_119390452_119391487_119391572_119391653_119391722_119393140
ENSMUST00000064104.13	chr11	-	3069	6	FSM	ENSMUSG00000052298.13	ENSMUST00000064104.13	3069	6	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_4	66.5263857428013	744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGTTTGGATTTTTCT	NA	False	NA	-12	True	AATAAA	-13	NA	54678501	54608281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54647231_54647386_54678385
ENSMUST00000064139.8	chr4	+	3159	6	FSM	ENSMUSG00000028517.9	ENSMUST00000064139.8	3159	6	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_2	17.8616908494129	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCACTGGTGCCTGAGCTGT	NA	False	NA	13	True	AATAAA	-23	NA	105014543	105089961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_105015161_105051999_105052158_105065720_105066002_105066396_105066455_105076524_105076702_105088093
ENSMUST00000064141.12	chr2	+	1905	15	FSM	ENSMUSG00000041966.19	ENSMUST00000064141.12	1905	15	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_14	54.6553207074357	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGCTTTATGACTATCC	NA	False	NA	12	True	AATAAA	-21	NA	70886124	70929486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132_70920278_70929358
ENSMUST00000064151.13	chr7	+	1799	8	FSM	ENSMUSG00000025509.16	ENSMUST00000064151.13	1799	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	24.6601388678083	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCCTCACTTCTGCATGT	9954	False	NA	19	True	AATAAA	-20	NA	141035119	141040007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_141035387_141037185_141037419_141037504_141037571_141037917_141038128_141038342_141038404_141038757_141038891_141039079_141039203_141039301
ENSMUST00000064162.11	chr14	+	1576	5	FSM	ENSMUSG00000052334.12	ENSMUST00000064162.11	1576	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	25.043711785596	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	41765951	41825778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
ENSMUST00000064200.9	chr15	+	1623	8	FSM	ENSMUSG00000052369.9	ENSMUST00000064200.9	1623	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	38.9117263685331	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCACTGTCTCTGACTGC	7681	False	NA	11	True	AATAAA	-17	NA	97862110	97868156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_97862385_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
ENSMUST00000064231.8	chr7	-	1780	6	FSM	ENSMUSG00000052396.8	ENSMUST00000064231.8	1780	6	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	4.4	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTCTTTTCTCTCTCC	NA	False	NA	-1	True	AATAAA	-20	NA	98887826	98868290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_98869167_98871459_98871660_98872199_98872375_98872707_98872913_98881664_98881844_98887681
ENSMUST00000064234.7	chr17	-	3164	13	FSM	ENSMUSG00000052397.9	ENSMUST00000064234.7	3164	13	0	0	0	0	multi-exon	FALSE	canonical	3	786	junction_7	74.9893973987138	4610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTGAGCGTTTATTGAGA	NA	False	NA	1	True	AATAAA	-20	NA	7050183	7005439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008981_7009752_7009884_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
ENSMUST00000064244.11	chr2	-	2281	8	FSM	ENSMUSG00000052406.15	ENSMUST00000064244.11	2281	8	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_5	23.9344342497821	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTGTGTGGAAGTTCAT	NA	False	NA	-6	True	AATAAA	-14	NA	26854398	26843574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_26844609_26845506_26845582_26846300_26846376_26848490_26848580_26850235_26850430_26850614_26850753_26852394_26852736_26854063
ENSMUST00000064272.10	chr1	+	1998	8	FSM	ENSMUSG00000052423.16	ENSMUST00000064272.10	1998	8	0	0	0	0	multi-exon	FALSE	non_canonical	1	74	junction_2	53.1005976368228	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTTGTGATTTCTGCA	NA	False	NA	15	True	AATAAA	-15	NA	171097897	171104468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_171097985_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
ENSMUST00000064314.10	chr8	-	1256	7	FSM	ENSMUSG00000052456.10	ENSMUST00000064314.10	1256	7	0	0	0	0	multi-exon	FALSE	canonical	1	664	junction_3	477.58303524681	5432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTTGTCAGTGGATG	8400	False	NA	-4	True	AATAAA	-14	NA	85751910	85744559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_85744885_85745150_85745349_85745439_85745548_85746150_85746302_85746388_85746538_85750806_85750955_85751733
ENSMUST00000064393.6	chr19	+	1803	9	FSM	ENSMUSG00000024785.8	ENSMUST00000064393.6	1803	9	0	0	0	0	multi-exon	TRUE	canonical	3	369	junction_1	16.9958634673264	1900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTGCACTGTAGTGTAAA	NA	False	NA	27	True	CATAAA	-19	NA	29078774	29121243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_29079041_29093122_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120541
ENSMUST00000064404.8	chr7	+	1685	11	FSM	ENSMUSG00000031068.9	ENSMUST00000064404.8	1685	11	0	0	0	0	multi-exon	FALSE	canonical	3	3305	junction_4	243.181434324251	28864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTGTTCCAGTAAGCTT	NA	False	NA	NA	False	TTTAAA	-17	NA	137039342	137070323	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
ENSMUST00000064495.8	chr8	+	2580	22	FSM	ENSMUSG00000052566.9	ENSMUST00000064495.8	2580	22	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_11	39.7071479254288	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCGTTTTTGCCTATCTG	NA	False	NA	18	True	AATAAA	-14	NA	85717245	85729978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85717382_85717847_85717934_85718005_85718079_85719812_85719864_85719952_85720086_85720203_85720272_85720616_85720680_85721089_85721171_85721250_85721412_85721504_85721646_85722364_85722567_85723583_85723695_85723792_85723881_85724007_85724078_85724628_85724767_85724832_85724921_85725118_85725154_85727783_85727867_85727949_85728054_85729132_85729244_85729315_85729388_85729493
ENSMUST00000064503.13	chr2	-	3195	13	FSM	ENSMUSG00000009207.16	ENSMUST00000064503.13	3195	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_6	31.6842056692114	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGTTTATTTTTATTTT	NA	False	NA	-14	True	ATTAAA	-43	NA	74409292	74350677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
ENSMUST00000064536.13	chr12	-	4443	19	FSM	ENSMUSG00000052593.17	ENSMUST00000064536.13	4443	19	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_17	16.3499537508313	709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATGAATGATACGAGCCA	NA	False	NA	NA	False	AATAAA	-36	NA	21423633	21373517	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_21375628_21376119_21376171_21378045_21378135_21379054_21379134_21380033_21380165_21382076_21382212_21382570_21382675_21383954_21384155_21386633_21386787_21390472_21390562_21390675_21390821_21392864_21392979_21395621_21395712_21397297_21397432_21399785_21399955_21401543_21401633_21403883_21404015_21411659_21411793_21423336
ENSMUST00000064547.13	chr7	-	1080	6	FSM	ENSMUSG00000052605.13	ENSMUST00000064547.13	1080	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	2.13541565040626	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACCGAACCATTATTGGGT	NA	False	NA	NA	False	AATAAA	-16	NA	4869192	4847957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4848365_4852448_4852567_4853753_4853825_4854022_4854233_4854391_4854533_4869059
ENSMUST00000064635.12	chr16	-	2170	8	FSM	ENSMUSG00000022544.15	ENSMUST00000064635.12	2170	8	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	73.3462573645565	1551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGCGCATGTGCACAG	NA	False	NA	-2	True	NA	NA	NA	5073847	5062015	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_5063250_5065316_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ENSMUST00000064703.13	chr2	+	1036	4	FSM	ENSMUSG00000035268.15	ENSMUST00000064703.13	1036	4	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_1	29.6348143611905	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTATGATCTTTTCTTT	8603	False	NA	10	True	AATAAA	-20	NA	163500318	163568074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_163500413_163545405_163545476_163563047_163563222_163567376
ENSMUST00000064740.9	chr6	+	1519	9	FSM	ENSMUSG00000052738.15	ENSMUST00000064740.9	1519	9	0	0	0	0	multi-exon	FALSE	canonical	3	1222	junction_2	134.074081667562	6132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGAAGACTTTTTATTG	2315	False	NA	19	True	AATAAA	-23	NA	73225364	73253894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_73225737_73233153_73233258_73237457_73237575_73240790_73241004_73241212_73241271_73246297_73246382_73247953_73248106_73252183_73252373_73253664
ENSMUST00000064771.12	chr1	-	3688	20	FSM	ENSMUSG00000052748.15	ENSMUST00000064771.12	3688	20	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_7	20.5845328266092	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGCTTTTCCGTTTACT	NA	False	NA	0	True	AATAAA	-18	NA	151304206	151243449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151286521_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
ENSMUST00000064798.16	chr17	+	493	3	FSM	ENSMUSG00000024038.18	ENSMUST00000064798.16	493	3	0	0	0	0	multi-exon	FALSE	canonical	3	3604	junction_2	48.5	25848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGTGGTTATTTCCCCTC	NA	False	NA	31	True	AATAAA	-21	NA	31739088	31750305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_31739236_31740542_31740667_31750083
ENSMUST00000064807.9	chr4	+	1378	3	FSM	ENSMUSG00000039693.12	ENSMUST00000064807.9	1378	3	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	89	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTGACTTTATCTTTT	2	True	NA	65	True	GATAAA	-14	NA	48540078	48561577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_48540272_48552379_48552831_48560843
ENSMUST00000064848.7	chr10	-	3114	28	FSM	ENSMUSG00000052798.14	ENSMUST00000064848.7	3114	28	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_19	68.4831139760951	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGAGTTTTCTCTTATG	NA	False	NA	-4	True	AATAAA	-29	NA	117628610	117586525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117595076_117595238_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625966_117626371_117626464_117628508
ENSMUST00000064889.13	chr17	-	1988	13	FSM	ENSMUSG00000023942.16	ENSMUST00000064889.13	1988	13	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_12	659.372555287727	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906496	45896128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
ENSMUST00000064910.7	chr6	+	2650	10	FSM	ENSMUSG00000030224.11	ENSMUST00000064910.7	2650	10	0	0	0	0	multi-exon	FALSE	canonical	3	757	junction_9	58.2073772423402	1548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGCTTGGATTCCTGAAGT	NA	False	NA	23	True	AATAAA	-26	NA	137712075	137728930	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_137712465_137713327_137713464_137716355_137716438_137716752_137716826_137718300_137718398_137718949_137719088_137722504_137722642_137725684_137725835_137726361_137726428_137727548
ENSMUST00000064922.7	chr8	-	1809	1	FSM	ENSMUSG00000052837.8	ENSMUST00000064922.7	1809	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	350	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGGTCTCTTTTTTC	NA	False	NA	-1	True	AGTAAA	-21	NA	85705347	85703538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_85703500_85705300
ENSMUST00000064941.7	chr11	-	2721	8	FSM	ENSMUSG00000020889.12	ENSMUST00000064941.7	2721	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	7.40104791256493	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCTTCTGTGATGTGTG	NA	False	NA	0	True	NA	NA	NA	98666159	98658757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_98659246_98659874_98660086_98660528_98660715_98661013_98661658_98662025_98662171_98662262_98662352_98662618_98662961_98665543
ENSMUST00000064950.11	chr1	+	1618	5	FSM	ENSMUSG00000013973.13	ENSMUST00000064950.11	1618	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	61.0184398358398	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGAGAAGCTGTGGC	1455	False	NA	18	True	NA	NA	NA	171156975	171169250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_171157095_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ENSMUST00000065049.15	chr8	-	1006	8	FSM	ENSMUSG00000052926.17	ENSMUST00000065049.15	1006	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	398.770508397182	1967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	8253	False	NA	-8	True	AATAAA	-14	NA	85692670	85684295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_85684483_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
ENSMUST00000065074.14	chr3	+	3224	10	FSM	ENSMUSG00000034544.18	ENSMUST00000065074.14	3224	10	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_4	31.3821526695165	693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGTGACTGCTTCCTCC	NA	False	NA	15	True	AATAAA	-15	NA	66893004	67265728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
ENSMUST00000065135.12	chr8	+	1497	4	FSM	ENSMUSG00000031851.15	ENSMUST00000065135.12	1497	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	41.4273125150814	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATGTCTAATTAGTTTA	NA	False	NA	NA	False	ACTAAA	-15	NA	126460976	126465918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126464793
ENSMUST00000065163.15	chr7	-	1047	7	FSM	ENSMUSG00000030538.16	ENSMUST00000065163.15	1047	7	0	0	0	0	multi-exon	FALSE	canonical	3	721	junction_2	48.5546656414763	5402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGGTAGCAGCAGGACT	2051	False	NA	0	True	AATAAA	-27	NA	79882561	79876894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882091_79882127_79882257
ENSMUST00000065210.10	chr10	+	1156	3	FSM	ENSMUSG00000064030.16	ENSMUST00000065210.10	1156	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	117	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACATGTGGTCAGGCTTTG	NA	False	NA	NA	False	AATAAA	-11	NA	128584323	128602428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128584436_128601015_128601110_128601478
ENSMUST00000065286.2	chr19	-	2035	8	FSM	ENSMUSG00000057858.9	ENSMUST00000065286.2	2035	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_7	81.0915330641484	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTGGGAAGTCATTGTC	9773	False	NA	NA	False	AATGAA	-25	NA	60215129	60187017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214663
ENSMUST00000065358.9	chr9	-	858	8	FSM	ENSMUSG00000032299.11	ENSMUST00000065358.9	858	8	0	0	0	0	multi-exon	FALSE	canonical	3	701	junction_7	157.218553197095	5773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTATGGGTCTTGCTTGC	6277	False	NA	-4	True	AATAAA	-15	NA	57065615	57062322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350_57064423_57065555
ENSMUST00000065364.5	chr6	+	998	7	FSM	ENSMUSG00000053119.12	ENSMUST00000065364.5	998	7	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_6	144.919997086515	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGTTTGTTTTTGCC	NA	False	NA	NA	False	NA	NA	NA	71520900	71559593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_71521018_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624_71556821_71559386
ENSMUST00000065373.6	chr1	+	1710	3	FSM	ENSMUSG00000025940.7	ENSMUST00000065373.6	1710	3	0	0	0	0	multi-exon	FALSE	canonical	3	512	junction_1	10.5	1404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGTGTTTTGTTTGCCTC	NA	False	NA	22	True	ATTAAA	-12	NA	16735433	16748499	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_16735730_16737891_16737998_16747191
ENSMUST00000065418.7	chr3	+	1107	8	FSM	ENSMUSG00000027935.15	ENSMUST00000065418.7	1107	8	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	3.88613443106727	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCCCATTTGCATTACT	NA	False	NA	6	True	ATTAAA	-18	NA	90128093	90133276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_90128330_90129543_90129605_90130833_90130895_90131096_90131175_90131800_90131891_90132008_90132075_90132154_90132209_90132815
ENSMUST00000065422.12	chr5	+	2268	13	FSM	ENSMUSG00000033773.15	ENSMUST00000065422.12	2268	13	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	12.1951720866178	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTTTCAGAAGCTGACA	NA	False	NA	26	True	AATAAA	-19	NA	107745600	107809704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_107745727_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107809346
ENSMUST00000065499.5	chr15	+	1830	8	FSM	ENSMUSG00000036106.16	ENSMUST00000065499.5	1830	8	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_7	10.3844467687921	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTCTGCCCCCTGGT	NA	False	NA	4	True	AATAAA	-14	NA	84565202	84587873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
ENSMUST00000065504.17	chr14	-	2851	13	FSM	ENSMUSG00000021814.18	ENSMUST00000065504.17	2851	13	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_12	120.241741458151	1478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTTGTATGTTTTTTTT	7978	False	NA	16	True	AATAAA	-41	NA	20530201	20505327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
ENSMUST00000065527.11	chr10	+	1274	7	FSM	ENSMUSG00000053219.16	ENSMUST00000065527.11	1274	7	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	14.8286509463568	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGTATGTGCTCCAGAAG	NA	False	NA	2	True	AATAAA	-12	NA	22049419	22059813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_22049436_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
ENSMUST00000065534.10	chr8	+	3127	12	FSM	ENSMUSG00000001482.16	ENSMUST00000065534.10	3127	12	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	53.2429330273546	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	31	True	TATAAA	-20	NA	124169724	124190009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_124169791_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
ENSMUST00000065625.12	chr1	+	2749	15	FSM	ENSMUSG00000053286.12	ENSMUST00000065625.12	2749	15	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_10	24.5323609686038	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	15	True	AATAAA	-16	NA	151304292	151333912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
ENSMUST00000065630.8	chr9	-	3128	18	FSM	ENSMUSG00000053289.9	ENSMUST00000065630.8	3128	18	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_8	33.3641956320396	2993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTGTTTTTATTGTAT	NA	False	NA	-3	True	AATAAA	-17	NA	53159353	53009934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_53010563_53028452_53028590_53060802_53060860_53068470_53068633_53071197_53071318_53115358_53115831_53118765_53118855_53120988_53121077_53124535_53124638_53134959_53135045_53136772_53136936_53140424_53140552_53145127_53145318_53146562_53146684_53147699_53147859_53149347_53149479_53151776_53151838_53159117
ENSMUST00000065648.15	chr1	+	2529	2	FSM	ENSMUSG00000050565.17	ENSMUST00000065648.15	2529	2	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	0	771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTGGCTTTTGTCTCTT	NA	False	NA	10	True	AATAAA	-19	NA	155916662	155929482	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_155916749_155927039
ENSMUST00000065678.6	chr4	+	564	4	FSM	ENSMUSG00000053317.12	ENSMUST00000065678.6	564	4	0	0	0	0	multi-exon	FALSE	canonical	3	2329	junction_2	60.4225859169308	29522	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTGCCTGTGCTTTATT	-22	True	NA	NA	False	AATAAA	-25	NA	47474657	47483242	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_47474754_47474911_47475010_47480130_47480233_47482974
ENSMUST00000065785.4	chr5	+	1803	6	FSM	ENSMUSG00000053388.11	ENSMUST00000065785.4	1803	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	7.17216843081644	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTGCTTCCCAACTTG	NA	False	NA	NA	False	AATAAA	-4	NA	135382149	135396859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_135382549_135387708_135387805_135392581_135392813_135392906_135392927_135395394_135395520_135395927
ENSMUST00000065793.12	chr3	-	1893	12	FSM	ENSMUSG00000053398.12	ENSMUST00000065793.12	1893	12	0	0	0	0	multi-exon	FALSE	canonical	3	1070	junction_1	240.376770374213	6906	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	False	NA	-2	True	AGTAAA	-16	NA	98247306	98220485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
ENSMUST00000065865.10	chr14	+	937	8	FSM	ENSMUSG00000053453.10	ENSMUST00000065865.10	937	8	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	118.776758531907	4509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGTGCTCATTCAAAAC	NA	False	NA	22	True	AATAAA	-16	NA	8508485	8520751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_8508579_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUST00000065896.9	chr4	-	2842	20	FSM	ENSMUSG00000028678.14	ENSMUST00000065896.9	2842	20	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_14	29.7897526488705	593	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGCAGATTCTGTGTGA	NA	False	NA	88	True	AATAAA	-17	NA	117039836	117016835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024170_117024245_117024310_117024490_117024582_117027031_117027195_117027281_117027337_117028913_117029010_117029481_117029583_117030798_117030919_117032082_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
ENSMUST00000065917.16	chr10	+	1486	16	FSM	ENSMUSG00000058799.17	ENSMUST00000065917.16	1486	16	0	0	0	0	multi-exon	FALSE	canonical	3	684	junction_15	463.449884621364	2114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	23	True	AATAAA	-25	NA	111309083	111332745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
ENSMUST00000065941.12	chr1	-	2219	13	FSM	ENSMUSG00000053483.16	ENSMUST00000065941.12	2219	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	116.920794652714	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCATGTTTGTATTTGTG	NA	False	NA	NA	False	AATAAA	-20	NA	171115564	171109518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113114_171113175_171113922_171114544_171115334
ENSMUST00000066052.12	chr5	-	1429	5	FSM	ENSMUSG00000053553.12	ENSMUST00000066052.12	1429	5	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_4	25.951878544722	3004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGACTTTTTGCCTGTC	NA	False	NA	-6	True	NA	NA	NA	139446257	139345493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_139346486_139347061_139347144_139349727_139349919_139441171_139441302_139446223
ENSMUST00000066070.7	chr7	-	774	8	FSM	ENSMUSG00000053565.11	ENSMUST00000066070.7	774	8	0	0	0	0	multi-exon	FALSE	canonical	3	2641	junction_1	370.651715060852	19957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTGTCTCTTGCCTGTA	NA	False	NA	-4	True	AATAAA	-17	NA	28681239	28670796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679868_28679968_28681098
ENSMUST00000066107.10	chr6	-	1647	3	FSM	ENSMUSG00000032641.19	ENSMUST00000066107.10	1647	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	2.5	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAATTGATTTACTTAG	NA	False	NA	-18	True	ATTAAA	-17	NA	134864795	134846119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_134847446_134854179_134854298_134864592
ENSMUST00000066160.3	chr5	+	2276	15	FSM	ENSMUSG00000029521.8	ENSMUST00000066160.3	2276	15	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	48.9833895211386	695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTTGTGGCTTTTC	9199	False	NA	31	True	AAAACA	-7	NA	110987865	111022011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
ENSMUST00000066208.13	chr18	-	1914	18	FSM	ENSMUSG00000053644.14	ENSMUST00000066208.13	1914	18	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_7	37.2351547251364	2035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGGTTTGGTGAGTTTTT	NA	False	NA	-5	True	ATTAAA	-30	NA	56695381	56659815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104
ENSMUST00000066237.10	chr11	-	1922	15	FSM	ENSMUSG00000020182.17	ENSMUST00000066237.10	1922	15	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_14	28.9743905220187	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	5550	False	NA	-1	True	AATAAA	-21	NA	11848044	11764100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11848007
ENSMUST00000066264.13	chr7	+	1267	10	FSM	ENSMUSG00000053898.13	ENSMUST00000066264.13	1267	10	0	0	0	0	multi-exon	TRUE	canonical	3	645	junction_5	36.3137901908447	3152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTCTTTACTGCAG	NA	False	NA	14	True	AATAAA	-12	NA	28524641	28531672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28524838_28525298_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813_28530886_28531141_28531293_28531428
ENSMUST00000066319.8	chr3	-	899	6	FSM	ENSMUSG00000010136.15	ENSMUST00000066319.8	899	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.2	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGTTCCTACTCTGTCT	NA	False	NA	NA	False	CATAAA	-10	NA	105908813	105904281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_105904516_105905587_105905706_105906843_105906975_105907687_105907787_105908413_105908560_105908642
ENSMUST00000066352.6	chr2	+	952	5	FSM	ENSMUSG00000053746.9	ENSMUST00000066352.6	952	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	3.34477204006491	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAAGCTTCCTGTGGGGT	8191	False	NA	6	True	ATTAAA	-16	NA	32665797	32667609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_32665908_32666315_32666536_32666718_32666819_32666994_32667041_32667133
ENSMUST00000066379.11	chr6	-	1550	8	FSM	ENSMUSG00000053768.14	ENSMUST00000066379.11	1550	8	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_3	29.0320020470023	2474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGACTAAGACTGGCC	NA	False	NA	-10	True	AATAAA	-25	NA	33037195	32769151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
ENSMUST00000066408.6	chr11	+	921	2	FSM	ENSMUSG00000053783.6	ENSMUST00000066408.6	921	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAAGGAAGCCGATGCTT	NA	False	NA	NA	False	AATAAA	-18	NA	75890737	75894395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_75891093_75893829
ENSMUST00000066469.14	chr8	+	1300	10	FSM	ENSMUSG00000055681.15	ENSMUST00000066469.14	1300	10	0	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_3	49.1055803823899	9086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	452	False	NA	26	True	AATAAA	-15	NA	70755167	70765640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
ENSMUST00000066544.5	chr5	+	1565	6	FSM	ENSMUSG00000053856.8	ENSMUST00000066544.5	1565	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	5.93295878967653	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGTGTGTGTGGGACCC	NA	False	NA	5	True	AATAAA	-17	NA	31265662	31269870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31265766_31266230_31266347_31266838_31267053_31267521_31267664_31268456_31268524_31268947
ENSMUST00000066594.4	chr8	+	2718	9	FSM	ENSMUSG00000053886.5	ENSMUST00000066594.4	2718	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	6.37867541108654	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGAGTTGCCTTGGTCA	NA	False	NA	17	True	NA	NA	NA	68729218	68800346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_68729525_68734684_68735064_68746954_68747112_68749305_68749478_68781903_68782013_68783686_68783889_68787716_68787848_68798604_68798826_68799305
ENSMUST00000066650.12	chr9	+	2261	8	FSM	ENSMUSG00000032469.13	ENSMUST00000066650.12	2261	8	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_3	17.2933867270063	1393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCCATCCTGCTGCAT	6406	False	NA	49	True	TATAAA	-1	NA	99457851	99466554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_99458179_99458628_99458754_99460493_99460575_99461409_99461496_99462191_99462417_99464074_99464156_99464369_99464516_99465364
ENSMUST00000066677.10	chr15	-	1168	3	FSM	ENSMUSG00000053929.18	ENSMUST00000066677.10	1168	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	38.5	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTATGGAATTTGTTTAT	NA	False	NA	NA	False	AATAAA	-16	NA	76544308	76542338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76543066_76543418_76543706_76544154
ENSMUST00000066701.13	chr12	+	889	6	FSM	ENSMUSG00000064215.14	ENSMUST00000066701.13	889	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	3.54400902933387	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCATTGTTCCCCTTTC	6587	False	NA	5	True	AATAAA	-19	NA	103400470	103406498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_103400610_103401680_103401833_103402821_103402942_103403934_103403965_103405659_103405822_103406212
ENSMUST00000066715.11	chr4	-	2218	11	FSM	ENSMUSG00000028952.13	ENSMUST00000066715.11	2218	11	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_10	11.2782977438973	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCAGTGTCTGTTCCTTGG	8679	False	NA	-1	True	AATAAA	-18	NA	152112118	152104230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152111999
ENSMUST00000066760.8	chr11	-	2219	11	FSM	ENSMUSG00000005204.13	ENSMUST00000066760.8	2219	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_10	281.644616493907	1933	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATATGCAAGTGGTGGTC	8292	False	NA	-11	True	AATAAA	-11	NA	69572910	69563946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572814
ENSMUST00000066804.5	chr13	+	1367	8	FSM	ENSMUSG00000054021.7	ENSMUST00000066804.5	1367	8	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_7	21.27372625027	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTATTTTTTTGTACTT	NA	False	NA	9	True	ATTAAA	-21	NA	43524185	43548678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
ENSMUST00000066819.11	chrX	-	1044	3	FSM	ENSMUSG00000054034.11	ENSMUST00000066819.11	1044	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0.5	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCAGTATCAGTCCATTT	NA	False	NA	NA	False	NA	NA	NA	135104625	135101696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135102563_135103133_135103202_135104515
ENSMUST00000066921.10	chr5	+	2784	12	FSM	ENSMUSG00000054099.12	ENSMUST00000066921.10	2784	12	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	8.37055050175789	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATTTGTGATTTGTAG	NA	False	NA	NA	False	ATTAAA	-18	NA	8472849	8504797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_8473040_8477195_8477268_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
ENSMUST00000066983.13	chr16	-	2848	5	FSM	ENSMUSG00000033157.18	ENSMUST00000066983.13	2848	5	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_3	18.7932833746528	1539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGGTGAGTCCTGTGC	NA	False	NA	-5	True	NA	NA	NA	45563318	45550087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
ENSMUST00000066984.14	chr13	-	1656	16	FSM	ENSMUSG00000021639.18	ENSMUST00000066984.14	1656	16	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_10	29.724213848122	1929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCAGTTTTTTTTCATTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	100629069	100605087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
ENSMUST00000067033.8	chr15	-	2471	9	FSM	ENSMUSG00000022329.16	ENSMUST00000067033.8	2471	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	80.4851500278157	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAGTATTAGAAAAAGAC	NA	False	NA	NA	False	ACTAAA	-33	NA	35155896	34875818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073368_35099579_35099695_35155672
ENSMUST00000067072.5	chr15	+	1166	4	FSM	ENSMUSG00000054196.8	ENSMUST00000067072.5	1166	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	1.88561808316413	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTGTTTATTTGTTTGA	NA	False	NA	NA	False	AATAAA	-18	NA	38940326	38950516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_38940555_38943877_38944100_38947660_38947878_38950017
ENSMUST00000067081.10	chr4	+	2595	20	FSM	ENSMUSG00000029062.15	ENSMUST00000067081.10	2595	20	0	0	0	0	multi-exon	TRUE	canonical	3	247	junction_2	74.7943440763884	2803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	3962	False	NA	23	True	ATTAAA	-28	NA	155709325	155734395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155709399_155709987_155710112_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
ENSMUST00000067098.8	chr19	+	1401	3	FSM	ENSMUSG00000054200.8	ENSMUST00000067098.8	1401	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAATCTCTATCTTGTGA	NA	False	NA	NA	False	NA	NA	NA	38085518	38102711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_38086142_38095829_38095959_38102062
ENSMUST00000067137.14	chr6	+	2103	6	FSM	ENSMUSG00000054226.14	ENSMUST00000067137.14	2103	6	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	21.35790251874	1833	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCCTTGGTTATTATG	3418	False	NA	22	True	NA	NA	NA	85892728	85907264	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
ENSMUST00000067167.6	chr19	-	1402	14	FSM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_2	36.3583414649629	1092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCAGAGTCTTTCCT	NA	False	NA	-7	True	AATAAA	-20	NA	38212586	38176928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_38177249_38178276_38178356_38184144_38184184_38188007_38188127_38189994_38190038_38193143_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
ENSMUST00000067215.9	chr15	-	2619	16	FSM	ENSMUSG00000054277.9	ENSMUST00000067215.9	2619	16	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_9	11.3927852413515	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGGTTGCCTGTGTTGTCA	3525	False	NA	-26	True	AATATA	-16	NA	83234448	83183939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_83184904_83187303_83187426_83191081_83191173_83192253_83192378_83194450_83194586_83197669_83197814_83198540_83198670_83206774_83206915_83208304_83208352_83211805_83211866_83214719_83214808_83216886_83216971_83218678_83218811_83220854_83220928_83227222_83227342_83234281
ENSMUST00000067272.9	chr12	-	590	3	FSM	ENSMUSG00000054302.16	ENSMUST00000067272.9	590	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	216.5	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATGAAAAGGAGTGGTTA	NA	False	NA	-10	True	ATTAAA	-14	NA	54742682	54720255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_54720576_54739658_54739742_54742495
ENSMUST00000067298.5	chr3	-	488	3	FSM	ENSMUSG00000054312.7	ENSMUST00000067298.5	488	3	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_2	92.5	9074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAGCTGTCTTATTGGTC	NA	False	NA	NA	False	AATAAA	-37	NA	95778831	95769945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95770245_95777805_95777928_95778764
ENSMUST00000067386.14	chr7	+	2701	10	FSM	ENSMUSG00000049643.16	ENSMUST00000067386.14	2701	10	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_8	25.2899238218224	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTCTGTGTATGT	396	False	NA	NA	False	AATAAA	-20	NA	27252657	27281524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27252779_27255838_27255960_27259976_27260029_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271127_27274015_27274166_27278137_27278209_27279761
ENSMUST00000067398.13	chr1	-	1914	11	FSM	ENSMUSG00000054387.14	ENSMUST00000067398.13	1914	11	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_9	94.8116026654966	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTTATTCACTTCCAAA	NA	False	NA	-58	True	AATACA	-15	NA	132953094	132919091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940453_132946514_132946623_132952985
ENSMUST00000067404.13	chr6	+	2766	6	FSM	ENSMUSG00000040242.15	ENSMUST00000067404.13	2766	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	164.658434342125	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCTCAGGGTTAATTT	NA	False	NA	29	True	AATAAA	-20	NA	146479356	146500696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146496673_146496788_146498792
ENSMUST00000067426.6	chr14	+	917	8	FSM	ENSMUSG00000037628.11	ENSMUST00000067426.6	917	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	72.4563204099335	1223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCCAGCTAGACATACACT	NA	False	NA	72	True	NA	NA	NA	46997997	47009126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_46998106_46999984_47000068_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007292_47007394_47008857
ENSMUST00000067476.9	chr8	-	3466	5	FSM	ENSMUSG00000054408.10	ENSMUST00000067476.9	3466	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	423.496753234308	1255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGGTTTATGTGTTTTT	NA	False	NA	-4	True	AATAAA	-38	NA	54983033	54973467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_54976431_54977975_54978092_54979485_54979563_54981376_54981451_54982797
ENSMUST00000067496.7	chr4	-	539	3	FSM	ENSMUSG00000054428.13	ENSMUST00000067496.7	539	3	0	0	0	0	multi-exon	FALSE	canonical	3	7869	junction_2	284	41665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATGCCTTCTACTGTCT	9241	False	NA	-20	True	AATAAA	-19	NA	132260970	132257865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132258135_132260606_132260699_132260792
ENSMUST00000067549.15	chr14	-	2933	5	FSM	ENSMUSG00000049295.18	ENSMUST00000067549.15	2933	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_4	128.195895020082	988	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	4694	False	NA	-7	True	AATAAA	-20	NA	52258190	52243538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52257979
ENSMUST00000067563.9	chr15	+	1383	6	FSM	ENSMUSG00000022359.11	ENSMUST00000067563.9	1383	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	11.5516232625549	813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTTTTGAAGAATCTG	2660	False	NA	27	True	AATAAA	-17	NA	58004772	58022050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58015992_58016142_58016975_58017101_58021297
ENSMUST00000067567.5	chr4	-	1626	10	FSM	ENSMUSG00000028670.15	ENSMUST00000067567.5	1626	10	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_1	24.7476149243608	907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCCTTATGTGGTACA	NA	False	NA	-11	True	ATTAAA	-20	NA	135699937	135695534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135696379_135696454_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
ENSMUST00000067631.7	chr2	-	3139	2	FSM	ENSMUSG00000049922.9	ENSMUST00000067631.7	3139	2	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	0	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGATACAGCATGTTTTAT	NA	False	NA	NA	False	AATAAA	-24	NA	92290139	92283108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_92285120_92289011
ENSMUST00000067646.12	chr9	+	3549	20	FSM	ENSMUSG00000032178.15	ENSMUST00000067646.12	3549	20	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_18	395.630525194118	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCCTGTCTCAGGCCTG	NA	False	NA	115	True	AATAAA	-13	NA	21279166	21316656	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
ENSMUST00000067663.14	chr2	+	1636	12	FSM	ENSMUSG00000002102.16	ENSMUST00000067663.14	1636	12	0	0	0	0	multi-exon	FALSE	canonical	3	1724	junction_1	113.356309451931	7559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAGTCTTTCTCAGCCT	NA	False	NA	18	True	AATAAA	-19	NA	90884353	90889777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
ENSMUST00000067664.10	chr11	+	2100	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	0	0	0	0	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	9987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTAACTATGGATCATTT	2991	False	NA	26	True	ATTAAA	-22	NA	75623694	75656671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
ENSMUST00000067744.8	chr16	+	4425	3	FSM	ENSMUSG00000054604.8	ENSMUST00000067744.8	4425	3	0	0	0	0	multi-exon	FALSE	canonical	3	981	junction_2	152	858	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATATTTTGTTTTGTGAGC	NA	False	NA	21	True	AATAAA	-30	NA	64672358	64679870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_64672600_64673161_64673389_64675913
ENSMUST00000067752.5	chr15	+	1946	2	FSM	ENSMUSG00000054619.8	ENSMUST00000067752.5	1946	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	451	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTGCATTTGTGTC	538	False	NA	12	True	AATAAA	-28	NA	100202641	100212236	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_100203226_100210874
ENSMUST00000067763.10	chrX	-	1032	8	FSM	ENSMUSG00000054626.12	ENSMUST00000067763.10	1032	8	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_7	69.0238054173031	1605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGTGGCAAATAGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	52799663	52785714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798236_52799598
ENSMUST00000067801.14	chr17	-	2533	17	FSM	ENSMUSG00000024039.16	ENSMUST00000067801.14	2533	17	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_16	84.4695766237762	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCCTTGGTGTGAGTGTC	1872	False	NA	1	True	NA	NA	NA	31856212	31831596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852126_31856056
ENSMUST00000067826.15	chr17	+	2087	17	FSM	ENSMUSG00000055817.19	ENSMUST00000067826.15	2087	17	0	0	0	0	multi-exon	FALSE	canonical	1	12	junction_6	449.066236066574	670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGTGTTTATTTTGTTT	NA	False	NA	NA	False	AATAAA	-18	NA	84013619	84122334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070342_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970_84100194_84107478_84107566_84111879_84112027_84122064
ENSMUST00000067837.10	chr5	-	2388	5	FSM	ENSMUSG00000029634.16	ENSMUST00000067837.10	2388	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_4	36.6401419211225	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAACCTTTAAAATGTTT	2760	False	NA	NA	False	AGTAAA	-24	NA	146157786	146146766	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146157749
ENSMUST00000067857.11	chr10	+	1442	10	FSM	ENSMUSG00000020085.16	ENSMUST00000067857.11	1442	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_9	41.9205597927	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCGATCCTCCTCCTTCG	NA	False	NA	NA	False	AATAAA	-21	NA	61551089	61575039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574806
ENSMUST00000067888.14	chr6	-	2671	9	FSM	ENSMUSG00000029735.18	ENSMUST00000067888.14	2671	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	3.903123748999	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGCAATGCTGTGGTATT	NA	False	NA	-6	True	ATTAAA	-19	NA	43643212	43321934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_43323835_43400554_43400667_43445935_43446083_43465808_43465905_43500817_43500891_43536876_43536947_43588247_43588320_43642693_43642752_43643069
ENSMUST00000067902.13	chr4	-	990	3	FSM	ENSMUSG00000043257.16	ENSMUST00000067902.13	990	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	36	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTCTGTCTTCTTGTTTT	NA	False	NA	-2	True	NA	NA	NA	133399958	133389564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_133390103_133397048_133397172_133399629
ENSMUST00000067925.8	chr8	+	2628	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	0	0	0	0	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	27565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGATGTTCTGTTTTGCTT	NA	False	NA	5	True	AAAACA	-17	NA	57964940	57969033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
ENSMUST00000067936.6	chr11	-	2150	6	FSM	ENSMUSG00000025132.14	ENSMUST00000067936.6	2150	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	1338.58961597646	6282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATTGTGTGGTCTGTGC	NA	False	NA	-15	True	AATAAA	-17	NA	120472206	120468934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120471815
ENSMUST00000067940.3	chrX	-	1224	9	FSM	ENSMUSG00000054727.3	ENSMUST00000067940.3	1224	9	0	0	0	0	multi-exon	FALSE	canonical	3	1101	junction_5	153.190241203544	11891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGACTTTAGTATATTT	NA	False	NA	-11	True	AGTAAA	-17	NA	52759798	52744867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52749908_52751980_52752016_52752989_52753054_52753476_52753824_52759728
ENSMUST00000067990.8	chr14	+	618	3	FSM	ENSMUSG00000054763.10	ENSMUST00000067990.8	618	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	3	701	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCCGTTTCAAATTCACC	NA	False	NA	28	True	AATAAA	-37	NA	63284439	63286059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_63284500_63284892_63285068_63285676
ENSMUST00000068031.8	chr11	-	5221	36	FSM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	0	0	0	0	multi-exon	FALSE	canonical	3	1094	junction_4	183.786113485769	1289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATTCCTCTTATTTTAAC	NA	False	NA	0	True	AATAAA	-22	NA	98915015	98883768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_98884240_98884589_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
ENSMUST00000068045.14	chr7	-	3877	21	FSM	ENSMUSG00000054808.16	ENSMUST00000068045.14	3877	21	0	0	0	0	multi-exon	FALSE	canonical	3	997	junction_13	138.805763569097	423	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGTGTCATCTTCTCCC	NA	False	NA	-1	True	AATAAA	-24	NA	28661765	28592672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
ENSMUST00000068056.12	chr17	+	1739	11	FSM	ENSMUSG00000019432.16	ENSMUST00000068056.12	1739	11	0	0	0	0	multi-exon	FALSE	canonical	3	2129	junction_1	149.184985839729	9713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTCTGTTCATGGCTTGA	NA	False	NA	37	True	AATGAA	-26	NA	35460721	35472683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
ENSMUST00000068326.14	chr5	+	2898	16	FSM	ENSMUSG00000032754.15	ENSMUST00000068326.14	2898	16	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	54.5084702897938	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGAGTCCCACAGGGT	-4	True	NA	6	True	AATAAA	-22	NA	120649232	120672089	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
ENSMUST00000068333.14	chr1	-	1951	17	FSM	ENSMUSG00000026245.17	ENSMUST00000068333.14	1951	17	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_9	154.241693455434	1839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGCCAGCGTGTGGAACA	NA	False	NA	15	True	AATAAA	-36	NA	78465534	78401704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
ENSMUST00000068407.6	chr15	+	1037	2	FSM	ENSMUSG00000055041.9	ENSMUST00000068407.6	1037	2	0	0	0	0	multi-exon	TRUE	canonical	3	114	junction_1	0	2194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTATTCTATTAGGGAA	NA	False	NA	NA	False	ATTAAA	-23	NA	76784109	76785505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76784193_76784551
ENSMUST00000068408.14	chr10	+	500	4	FSM	ENSMUSG00000063457.15	ENSMUST00000068408.14	500	4	0	0	0	0	multi-exon	FALSE	canonical	3	5732	junction_1	1157.99510649513	48892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGGTTTTTGTTTTTTT	6342	False	NA	30	True	AATAAA	-21	NA	80128286	80129948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80128318_80128608_80128695_80129475_80129711_80129800
ENSMUST00000068457.15	chr15	+	3351	9	FSM	ENSMUSG00000036167.17	ENSMUST00000068457.15	3351	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	61.4527257328754	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAATGTTCACT	NA	False	NA	NA	False	TATAAA	-21	NA	93296280	93389379	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93349997_93350055_93353331_93353412_93357552_93357673_93362985_93363127_93386854
ENSMUST00000068487.12	chr6	-	2577	14	FSM	ENSMUSG00000030254.17	ENSMUST00000068487.12	2577	14	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	88.4665550417034	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGCAATGTGTAATGTC	NA	False	NA	-109	True	CATAAA	-16	NA	112673631	112596935	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_112597866_112605422_112605486_112621548_112621709_112626555_112626799_112641056_112641135_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
ENSMUST00000068532.10	chr14	+	1324	6	FSM	ENSMUSG00000055128.16	ENSMUST00000068532.10	1324	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	10.2097992144802	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGACACTGTCTTTGTC	537	False	NA	14	True	AATAAA	-24	NA	47069581	47091650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_47069837_47077613_47077754_47083330_47083509_47083641_47083790_47090835_47090944_47091155
ENSMUST00000068551.9	chrX	-	1500	9	FSM	ENSMUSG00000031362.18	ENSMUST00000068551.9	1500	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	125.099897581893	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCAGCTTTGAATGTCTC	NA	False	NA	NA	False	NA	NA	NA	72286674	72277293	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285789_72286219_72286267_72286581
ENSMUST00000068586.13	chr2	-	2445	15	FSM	ENSMUSG00000040434.17	ENSMUST00000068586.13	2445	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	34.8762389144289	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGAGTGTTTTGTCTGT	NA	False	NA	0	True	NA	NA	NA	92201402	92195390	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92199718_92199834_92200007_92200204_92200329_92200521_92200605_92200910_92201009_92201083_92201239_92201325
ENSMUST00000068641.8	chr7	+	1329	2	FSM	ENSMUSG00000055200.8	ENSMUST00000068641.8	1329	2	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAATTGTAATTAAATCT	NA	False	NA	84	True	AATAAA	-16	NA	27173192	27176789	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27173297_27175564
ENSMUST00000068686.13	chr11	-	1621	6	FSM	ENSMUSG00000006056.14	ENSMUST00000068686.13	1621	6	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_5	66.2751838926155	1631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTATGTGAGTACACTATC	4211	False	NA	-2	True	NA	NA	NA	96002790	95990151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_95991229_95993473_95993579_95994042_95994177_95994283_95994387_95998256_95998431_96002762
ENSMUST00000068705.13	chr1	-	2171	5	FSM	ENSMUSG00000026566.16	ENSMUST00000068705.13	2171	5	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_1	201.827896981562	787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTGTCTGCTTGTTTT	NA	False	NA	-1	True	AATACA	-19	NA	165462090	165419808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_165421247_165432178_165432312_165433177_165433392_165436006_165436174_165461871
ENSMUST00000068755.14	chrX	+	2823	5	FSM	ENSMUSG00000072964.15	ENSMUST00000068755.14	2823	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	79.1296404642407	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGTTTGTGTATATGA	NA	False	NA	10	True	AATAAA	-21	NA	134786601	134791830	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_134786847_134787593_134787676_134788009_134788067_134789120_134789229_134789499
ENSMUST00000068795.4	chr5	-	1648	2	FSM	ENSMUSG00000055302.6	ENSMUST00000068795.4	1648	2	0	0	0	0	multi-exon	FALSE	canonical	3	1678	junction_1	0	5399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCCTGTGTTTAGTTTA	NA	False	NA	41	True	AAGAAA	-22	NA	36954116	36952210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_36953289_36953546
ENSMUST00000068798.13	chr3	+	1500	6	FSM	ENSMUSG00000027942.18	ENSMUST00000068798.13	1500	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	198.067261302821	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGATCATTTCTTTAGA	NA	False	NA	7	True	AATAAA	-17	NA	89960177	89969749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89965791_89965959_89966048_89966108_89968944
ENSMUST00000068805.14	chr1	+	2009	15	FSM	ENSMUSG00000026427.17	ENSMUST00000068805.14	2009	15	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_5	43.4650340351123	1240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTATTTCTAATCTAAA	NA	False	NA	41	True	AATAAA	-22	NA	131080917	131101215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
ENSMUST00000068825.8	chr5	+	3269	15	FSM	ENSMUSG00000028954.12	ENSMUST00000068825.8	3269	15	0	0	0	0	multi-exon	TRUE	canonical	3	384	junction_1	91.6660977100463	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGTCTGACGCAGTGA	NA	False	NA	11	True	AATAAA	-20	NA	24890821	24915376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_24891021_24894377_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
ENSMUST00000068856.5	chr9	+	1391	9	FSM	ENSMUSG00000055334.5	ENSMUST00000068856.5	1391	9	0	0	0	0	multi-exon	TRUE	canonical	3	166	junction_1	20.9105236663265	1201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTGTGGTTATTCGG	NA	False	NA	8	True	AATATA	-19	NA	56858161	56890490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_56858238_56864297_56864461_56870279_56870428_56877537_56877643_56877873_56877971_56882496_56882595_56885302_56885381_56888128_56888210_56889945
ENSMUST00000068892.15	chr8	-	3307	16	FSM	ENSMUSG00000031575.19	ENSMUST00000068892.15	3307	16	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_15	813.355748325008	6757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCAATGTTTGAATGAC	NA	False	NA	NA	False	NA	NA	NA	26330815	26306023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330609
ENSMUST00000068916.16	chr8	+	1483	7	FSM	ENSMUSG00000031570.18	ENSMUST00000068916.16	1483	7	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	15.9269164205337	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210063	26214914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
ENSMUST00000068933.12	chr11	-	1903	3	FSM	ENSMUSG00000034520.15	ENSMUST00000068933.12	1903	3	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_2	138	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTTAAAGGGTAATGT	NA	False	NA	-8	True	ATTAAA	-22	NA	102710005	102690404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102692022_102693666_102693743_102709795
ENSMUST00000068996.13	chr7	-	1126	4	FSM	ENSMUSG00000040139.15	ENSMUST00000068996.13	1126	4	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_1	38.0292285252044	1411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGTCTGGCTTGGTGT	NA	False	NA	-7	True	ATTAAA	-14	NA	137012491	136977302	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_136978081_136989099_136989163_136989268_136989431_137012368
ENSMUST00000069000.9	chr9	+	2482	7	FSM	ENSMUSG00000032392.12	ENSMUST00000069000.9	2482	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	17.0269394392142	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAAGTTGTCTGTGACTG	NA	False	NA	NA	False	AATAAA	-15	NA	65121971	65146500	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_65122146_65122630_65122915_65133334_65133473_65137087_65137295_65140950_65141123_65143922_65144065_65145135
ENSMUST00000069004.14	chr10	+	3024	11	FSM	ENSMUSG00000019891.16	ENSMUST00000069004.14	3024	11	0	0	0	0	multi-exon	TRUE	canonical	3	170	junction_2	11.5134703716994	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCCTGACTTCTATTTG	NA	False	NA	6	True	AATAAA	-16	NA	52109714	52197472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_52109932_52137822_52138036_52160198_52160334_52162443_52162496_52166946_52167020_52180682_52180817_52187495_52187537_52188909_52188998_52190450_52190501_52193127_52193248_52195571
ENSMUST00000069064.7	chr16	+	1297	5	FSM	ENSMUSG00000041774.17	ENSMUST00000069064.7	1297	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	15.4171171105366	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGGTTTATAAAGTG	NA	False	NA	12	True	AATAAA	-16	NA	16964842	16966710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_16965011_16965096_16965257_16965461_16965562_16965660_16965839_16966019
ENSMUST00000069077.10	chrX	+	1200	9	FSM	ENSMUSG00000067768.13	ENSMUST00000069077.10	1200	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	80.9281123899477	1831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257954	72266059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_72258088_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
ENSMUST00000069103.11	chrX	+	1304	9	FSM	ENSMUSG00000067768.13	ENSMUST00000069103.11	1304	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	98.081519028816	1102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257954	72266059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_72258192_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
ENSMUST00000069187.12	chr13	+	3546	10	FSM	ENSMUSG00000021712.16	ENSMUST00000069187.12	3546	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	70.1851167790148	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGGAGTTGTTATTCTAA	NA	False	NA	2	True	AATAAA	-12	NA	104315346	104339880	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_104315470_104317581_104317745_104321233_104321356_104323908_104324188_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
ENSMUST00000069250.14	chr17	+	1749	5	FSM	ENSMUSG00000036036.16	ENSMUST00000069250.14	1749	5	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_1	1286.78268852981	3313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313416	37321524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_37313670_37314177_37314208_37315688_37315796_37316941_37317087_37320310
ENSMUST00000069304.14	chr11	+	2225	14	FSM	ENSMUSG00000007850.17	ENSMUST00000069304.14	2225	14	0	0	0	0	multi-exon	TRUE	canonical	3	130	junction_1	115.462537790991	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCTGTCTGTGCTTTAG	NA	False	NA	NA	False	AATAAA	-18	NA	50268545	50277354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
ENSMUST00000069324.7	chr7	+	1096	2	FSM	ENSMUSG00000055633.7	ENSMUST00000069324.7	1096	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGGTTCTTACTTGCA	2919	False	NA	4	True	AATAAA	-15	NA	5054536	5056722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_5054714_5055803
ENSMUST00000069330.14	chr9	-	1356	5	FSM	ENSMUSG00000001348.16	ENSMUST00000069330.14	1356	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_4	52.4374627532645	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGTGTCATCAAGGTTA	8912	False	NA	-19	True	AATAAA	-21	NA	22043111	22038022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22043032
ENSMUST00000069360.14	chrX	-	2216	8	FSM	ENSMUSG00000055653.14	ENSMUST00000069360.14	2216	8	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_6	17.9398086582293	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTTGGTCCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-17	NA	51702798	51361302	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_51361832_51403713_51403874_51454598_51454720_51476985_51477112_51485949_51486084_51517316_51518012_51671673_51671836_51702509
ENSMUST00000069419.8	chr19	+	1009	9	FSM	ENSMUSG00000025090.10	ENSMUST00000069419.8	1009	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	14.1686273153048	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAGAGGTCCTTGTACAG	NA	False	NA	NA	False	AATACA	-14	NA	58500452	58541460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_58500498_58500742_58500868_58501047_58501134_58514279_58514397_58515703_58515870_58524992_58525095_58525693_58525797_58539859_58539948_58541283
ENSMUST00000069423.13	chr2	-	773	5	FSM	ENSMUSG00000027239.15	ENSMUST00000069423.13	773	5	0	0	0	0	multi-exon	FALSE	canonical	3	1617	junction_4	477.436121381699	7221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762125	91760172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91762038
ENSMUST00000069486.13	chr17	+	1134	3	FSM	ENSMUSG00000055760.13	ENSMUST00000069486.13	1134	3	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	34	4535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCATATTTCTATTCTTAA	NA	False	NA	39	True	ATTAAA	-30	NA	80531869	80535926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_80532100_80533049_80533194_80535166
ENSMUST00000069503.13	chr11	+	1871	9	FSM	ENSMUSG00000020513.16	ENSMUST00000069503.13	1871	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	8.83087623059003	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTCAGTCTGTTAAGTAAT	NA	False	NA	NA	False	AATAAA	-19	NA	86435816	86458186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_86436057_86439608_86439829_86440149_86440298_86443613_86443831_86445898_86446131_86448550_86448716_86452061_86452203_86456510_86456695_86457862
ENSMUST00000069530.13	chr15	-	2114	13	Intergenic	novelGene_1	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1811	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCCCTTCGACCCTTCAAG	1899	False	NA	NA	False	NA	NA	NA	81924286	81900569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Intergenic_chr15_-_81900677_81901310_81901400_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
ENSMUST00000069537.3	chr7	-	1658	8	FSM	ENSMUSG00000030629.16	ENSMUST00000069537.3	1658	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	283.434475744953	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCTACGTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	84328559	84264261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84302089_84302251_84328517
ENSMUST00000069548.7	chr10	+	1782	15	FSM	ENSMUSG00000040345.11	ENSMUST00000069548.7	1782	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	20.6447107422859	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	8881	False	NA	10	True	ATTAAA	-16	NA	127159624	127165812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127159700_127160987_127161069_127161391_127161500_127161712_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
ENSMUST00000069579.7	chr17	-	537	4	FSM	ENSMUSG00000055839.7	ENSMUST00000069579.7	537	4	0	0	0	0	multi-exon	FALSE	canonical	3	7596	junction_3	2024.23060829431	72904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTTCTCATTTTTATTT	NA	False	NA	-3	True	AGTAAA	-18	NA	24048110	24043711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24043954_24046441_24046548_24047817_24047953_24048056
ENSMUST00000069580.12	chr6	-	1434	5	FSM	ENSMUSG00000055850.13	ENSMUST00000069580.12	1434	5	0	0	0	0	multi-exon	FALSE	canonical	3	875	junction_2	66.4266512779321	6161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8408	False	NA	NA	False	TATAAA	-15	NA	72339415	72336696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72338394_72338523_72339223
ENSMUST00000069595.13	chr6	-	1191	4	FSM	ENSMUSG00000055850.13	ENSMUST00000069595.13	1191	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	437.683548798546	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8447	False	NA	NA	False	TATAAA	-15	NA	72339376	72336696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72339299
ENSMUST00000069674.6	chr4	-	974	3	FSM	ENSMUSG00000055900.15	ENSMUST00000069674.6	974	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	6.5	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTTTTTTTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	116413132	116410151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_116410927_116411964_116412101_116413069
ENSMUST00000069695.9	chr6	+	1546	8	FSM	ENSMUSG00000055912.9	ENSMUST00000069695.9	1546	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	17.1583263538524	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGTGTTCTGGAGAAT	NA	False	NA	10	True	ATTAAA	-21	NA	72332429	72336745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_72332528_72333113_72333296_72333704_72333753_72334032_72334120_72334931_72335000_72335290_72335419_72335561_72335740_72335988
ENSMUST00000069718.15	chr8	+	3564	9	FSM	ENSMUSG00000055932.16	ENSMUST00000069718.15	3564	9	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_7	44.2492937796752	476	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCGTCCGTGCTTTTCTCC	NA	False	NA	16	True	AATAAA	-24	NA	92040152	92395067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_92040249_92128434_92128513_92135850_92136470_92168290_92168435_92194944_92195025_92200936_92201081_92211786_92211907_92249399_92249525_92392909
ENSMUST00000069722.13	chrX	+	1851	10	FSM	ENSMUSG00000009995.18	ENSMUST00000069722.13	1851	10	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_7	76.3282385490455	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTCTTCTGTGTAGGA	NA	False	NA	10	True	AATAAA	-23	NA	73326302	73333757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332120_73332267_73332321_73332710_73332789_73332904
ENSMUST00000069731.12	chrX	-	799	5	Intergenic	novelGene_3	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21486	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGCGCGGAAAAAAAAACTC	NA	False	NA	NA	False	NA	NA	NA	67848173	67805444	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Intergenic_chrX_-_67805838_67807537_67807616_67815650_67815748_67847210_67847300_67848031
ENSMUST00000069772.16	chr7	+	2297	8	FSM	ENSMUSG00000002781.20	ENSMUST00000069772.16	2297	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	17.4414472344658	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGAGTAGTGTGGCTGC	5492	False	NA	7	True	AATAAA	-14	NA	45546364	45566837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45546526_45546858_45547091_45549055_45549161_45556341_45556537_45557530_45557662_45558745_45559026_45565506_45565697_45565834
ENSMUST00000069803.5	chrX	-	450	3	FSM	ENSMUSG00000089996.7	ENSMUST00000069803.5	450	3	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_2	19	1825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTAACTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	135858774	135856013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135856232_135857483_135857589_135858647
ENSMUST00000069877.12	chr15	-	1011	5	FSM	ENSMUSG00000022420.17	ENSMUST00000069877.12	1011	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	59.2637114936282	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	327	False	NA	NA	False	ATTAAA	-17	NA	79658584	79645653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_79646251_79646627_79646727_79647710_79647795_79649016_79649223_79658559
ENSMUST00000069949.13	chr6	-	1647	10	FSM	ENSMUSG00000004980.17	ENSMUST00000069949.13	1647	10	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_1	2676.86493431088	4009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTGCACTGCTACAACT	NA	False	NA	NA	False	AATAAA	-16	NA	51446874	51437911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_51438414_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUST00000069968.13	chr13	-	1006	8	FSM	ENSMUSG00000021493.16	ENSMUST00000069968.13	1006	8	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	27.1751687376246	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCCTCTGTCTCCCA	NA	False	NA	-2	True	AATAAA	-17	NA	55661251	55654585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_55654937_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
ENSMUST00000070039.14	chr17	-	1939	8	FSM	ENSMUSG00000056121.17	ENSMUST00000070039.14	1939	8	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_3	15.727267365169	500	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGAGTCTTGAGTTTTT	NA	False	NA	-6	True	AATAAA	-13	NA	78725560	78685313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_78686175_78689036_78689103_78692172_78692249_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
ENSMUST00000070102.6	chr8	-	730	2	FSM	ENSMUSG00000056155.7	ENSMUST00000070102.6	730	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	198	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTCTTGGGACAAGGTG	NA	False	NA	-5	True	AATAAA	-15	NA	84903181	84900361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84900602_84902691
ENSMUST00000070112.6	chr2	-	861	4	FSM	ENSMUSG00000026895.8	ENSMUST00000070112.6	861	4	0	0	0	0	multi-exon	FALSE	canonical	3	1222	junction_2	59.9184631163235	11422	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGTGTTTTATTATGCT	NA	False	NA	-1	True	ATTAAA	-15	NA	35939418	35926337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_35926654_35929723_35929890_35934361_35934526_35939203
ENSMUST00000070117.8	chr9	-	2853	20	FSM	ENSMUSG00000056167.9	ENSMUST00000070117.8	2853	20	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_5	120.736887991548	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGATATGTTGCATGGTG	NA	False	NA	NA	False	NA	NA	NA	114469142	114414945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114426862_114426899_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ENSMUST00000070135.8	chr18	+	1911	5	FSM	ENSMUSG00000034006.18	ENSMUST00000070135.8	1911	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	7.26291952316697	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACATGCTTCATGTGGTG	NA	False	NA	2	True	AATAAA	-35	NA	80299532	80335927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_80299619_80299996_80300334_80306634_80306769_80326490_80326708_80334790
ENSMUST00000070141.7	chrX	-	1646	4	FSM	ENSMUSG00000079350.3	ENSMUST00000070141.7	1646	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	17.6823829464998	334	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTCTTTAGTTTCTTG	NA	False	NA	-5	True	AATAAA	-16	NA	153778846	153768770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_153770173_153771107_153771197_153777179_153777280_153778791
ENSMUST00000070210.6	chr19	-	2666	10	FSM	ENSMUSG00000013662.7	ENSMUST00000070210.6	2666	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	139.76408694654	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTTTCCCCACTTAGT	NA	False	NA	-18	True	AATAAA	-17	NA	32717186	32650221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32717041
ENSMUST00000070215.8	chr19	-	888	6	FSM	ENSMUSG00000056209.8	ENSMUST00000070215.8	888	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_3	39.9229257444892	10786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTGGCTTTTTCAA	4887	False	NA	0	True	AATAAA	-27	NA	45738030	45736172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495_45737582_45737877
ENSMUST00000070257.14	chr11	+	2650	20	FSM	ENSMUSG00000020412.17	ENSMUST00000070257.14	2650	20	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_9	44.9846388062843	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTGTGACATGCTCCAG	NA	False	NA	8	True	AATAAA	-20	NA	4587746	4633385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4606268_4606337_4608214_4608326_4609271_4609385_4614228_4614304_4618314_4618423_4618579_4618649_4618861_4618937_4620275_4620463_4622282_4622498_4623327_4623448_4629251_4629346_4629430_4629553_4630082_4630183_4631438_4631519_4632906
ENSMUST00000070326.14	chr9	+	2871	22	FSM	ENSMUSG00000038379.16	ENSMUST00000070326.14	2871	22	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_10	27.5493373131652	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTACAGTGGTCAGTTTCT	NA	False	NA	10	True	AATAAA	-21	NA	83716770	83754439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235_83751334_83754037
ENSMUST00000070334.10	chr11	+	1404	7	FSM	ENSMUSG00000034793.16	ENSMUST00000070334.10	1404	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	57.3044985629885	879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTCTTGTCTGTGCTC	NA	False	NA	5	True	AATAAA	-19	NA	102080445	102084907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_102080479_102080696_102080970_102082860_102082968_102083298_102083390_102083574_102083694_102083910_102084053_102084268
ENSMUST00000070345.5	chr6	-	2244	13	FSM	ENSMUSG00000056305.5	ENSMUST00000070345.5	2244	13	0	0	0	0	multi-exon	FALSE	canonical	3	571	junction_6	46.7748745470139	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTTGTGGGTGGGCACT	NA	False	NA	67	True	NA	NA	NA	72322167	72295660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72296223_72296722_72296810_72298238_72298375_72302628_72302772_72305500_72305690_72306432_72306501_72310092_72310171_72313242_72313469_72314684_72314838_72315375_72315513_72316949_72317045_72319881_72319952_72321867
ENSMUST00000070487.12	chr5	+	1606	7	FSM	ENSMUSG00000029625.17	ENSMUST00000070487.12	1606	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	315.629881700422	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTTTCATTACTTAA	NA	False	NA	23	True	ATTAAA	-15	NA	145104033	145118851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112920_145113015_145114039_145114113_145115645_145115739_145117945
ENSMUST00000070515.2	chr14	-	2035	19	FSM	ENSMUSG00000022040.9	ENSMUST00000070515.2	2035	19	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_15	18.7001188350354	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTTTCTTGTGTTCTTG	NA	False	NA	-5	True	AATAAA	-16	NA	66361949	66321825	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_66322210_66322379_66322439_66322744_66322826_66323682_66323753_66324413_66324517_66325748_66325783_66326954_66327030_66330247_66330360_66332186_66332273_66333134_66333162_66336252_66336288_66339041_66339121_66339595_66339692_66341174_66341244_66344662_66344786_66345425_66345617_66347564_66347725_66354159_66354245_66361783
ENSMUST00000070532.8	chr4	+	823	4	FSM	ENSMUSG00000028773.9	ENSMUST00000070532.8	823	4	0	0	0	0	multi-exon	FALSE	canonical	3	4337	junction_3	149.244765402342	47375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTTGGTCCTC	NA	False	NA	31	True	AATAAA	-20	NA	130202387	130209256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_130202644_130206083_130206257_130207746_130207849_130208964
ENSMUST00000070565.15	chr12	-	1693	12	FSM	ENSMUSG00000056458.17	ENSMUST00000070565.15	1693	12	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_11	66.0974737267458	499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7660	False	NA	-3	True	AATATA	-18	NA	110807373	110774231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
ENSMUST00000070755.13	chr4	+	2870	15	FSM	ENSMUSG00000078773.12	ENSMUST00000070755.13	2870	15	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_12	66.7496464868725	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	25	True	NA	19	True	AGTAAA	-16	NA	11558971	11615805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610566_11612371_11612439_11612617_11612819_11615442
ENSMUST00000070785.16	chr13	-	2561	6	FSM	ENSMUSG00000021327.20	ENSMUST00000070785.16	2561	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	21.2452347598232	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGTTCTTACTTGGG	NA	False	NA	2	True	AATAAA	-23	NA	21586883	21571172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580748_21586841
ENSMUST00000070878.9	chr19	-	642	6	FSM	ENSMUSG00000056629.17	ENSMUST00000070878.9	642	6	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_5	200.859752065963	7854	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTGAGTCTGTATTTCT	NA	False	NA	-3	True	TTTAAA	-35	NA	6957808	6955108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956546_6957761
ENSMUST00000070886.9	chr13	-	929	3	FSM	ENSMUSG00000021621.16	ENSMUST00000070886.9	929	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	63.5	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTTTGTTGAACTGATC	NA	False	NA	NA	False	AATAAA	-15	NA	91949099	91944652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_91945374_91948729_91948823_91948984
ENSMUST00000070949.6	chr18	-	651	6	FSM	ENSMUSG00000056671.8	ENSMUST00000070949.6	651	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	146.609140233479	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTGCTTCAAATCACAGG	NA	False	NA	-110	True	NA	NA	NA	42084259	42008760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_42008919_42045434_42045541_42065665_42065827_42068232_42068307_42070698_42070757_42084165
ENSMUST00000070990.8	chr6	-	2122	12	FSM	ENSMUSG00000056698.12	ENSMUST00000070990.8	2122	12	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_11	7.42677755109095	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCTCTGGTATTTTCTTC	NA	False	NA	-11	True	AATAAA	-11	NA	72575326	72542916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72575304
ENSMUST00000070996.11	chr11	-	1373	7	FSM	ENSMUSG00000078812.11	ENSMUST00000070996.11	1373	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_6	9665.3113547021	48918	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9941	False	NA	-15	True	AATAAA	-20	NA	69812212	69807545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69810274_69810305_69811988
ENSMUST00000071006.9	chr17	+	758	6	FSM	ENSMUSG00000024217.11	ENSMUST00000071006.9	758	6	0	0	0	0	multi-exon	FALSE	canonical	3	1664	junction_1	167.935225607971	23716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGTCCCTGTCCCTT	NA	False	NA	18	True	AATAAA	-20	NA	28059060	28070939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_28059144_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
ENSMUST00000071044.13	chr6	+	1247	10	FSM	ENSMUSG00000056737.15	ENSMUST00000071044.13	1247	10	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	22.7389913671443	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTGTGTGGCTTGTCC	NA	False	NA	12	True	AATAAA	-23	NA	72521373	72539966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_72521450_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
ENSMUST00000071068.9	chr11	-	473	2	FSM	ENSMUSG00000051355.19	ENSMUST00000071068.9	473	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	1041	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGGGTAAAAAAGAGAAACC	NA	False	NA	-31	True	AATATA	-10	NA	22932252	22849758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_22850058_22932078
ENSMUST00000071081.13	chr5	+	1311	8	FSM	ENSMUSG00000029152.14	ENSMUST00000071081.13	1311	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	338.614704889417	629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGGCTTTGTTTGAA	NA	False	NA	31	True	AATAAA	-32	NA	73450126	73471300	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464142_73470785
ENSMUST00000071095.14	chr12	-	2755	13	FSM	ENSMUSG00000056770.16	ENSMUST00000071095.14	2755	13	0	0	0	0	multi-exon	FALSE	canonical	3	469	junction_9	51.1017503505397	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTTTGTTCCTTGTC	NA	False	NA	0	True	ATTAAA	-19	NA	108145573	108072689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108084500_108084616_108085364_108085424_108124012_108124270_108124534_108124608_108126491_108126641_108129231_108129325_108131321_108131432_108145411
ENSMUST00000071118.7	chr13	-	1030	1	FSM	ENSMUSG00000057762.7	ENSMUST00000071118.7	1030	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2426	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTAACGGCCGGGCATGGT	NA	False	NA	NA	False	NA	NA	NA	97235745	97234715	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_97234700_97235700
ENSMUST00000071134.4	chr8	+	1868	4	FSM	ENSMUSG00000062380.5	ENSMUST00000071134.4	1868	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	7.03957069398096	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTATTGGAGATTTCT	NA	False	NA	27	True	AATAAA	-27	NA	124138162	124148754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_124138402_124144831_124144941_124145678_124145790_124147345
ENSMUST00000071207.14	chr7	+	1698	11	FSM	ENSMUSG00000011658.17	ENSMUST00000071207.14	1698	11	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_5	12.7373466624725	771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGGGCTCTTTGCTGTCG	NA	False	NA	26	True	AATAAA	-37	NA	44545502	44550048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44547049_44547926_44548125_44548199_44548296_44548408_44548516_44548597_44548663_44548735_44548811_44549556
ENSMUST00000071215.5	chr14	+	616	3	FSM	ENSMUSG00000063787.5	ENSMUST00000071215.5	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	1953	junction_1	51.5	26977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCCATTTCTTCTAATT	NA	False	NA	33	True	AATAAA	-16	NA	20753073	20754493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_20753266_20753357_20753477_20754188
ENSMUST00000071237.7	chr3	-	480	1	FSM	ENSMUSG00000105359.2	ENSMUST00000071237.7	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	795	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATGTACACAAAGAAATAA	NA	False	NA	NA	False	NA	NA	NA	38162071	38161591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_38161600_38162100
ENSMUST00000071280.8	chr3	-	1777	6	FSM	ENSMUSG00000040374.14	ENSMUST00000071280.8	1777	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	21.3672646822189	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGATGATTGTGCATTTAT	NA	False	NA	-4	True	AATAAA	-16	NA	5641188	5625563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5635546_5635690_5641097
ENSMUST00000071301.5	chr9	-	334	3	FSM	ENSMUSG00000051234.7	ENSMUST00000071301.5	334	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	541.5	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGGGTAGTCCAAAGAATC	3778	False	NA	NA	False	NA	NA	NA	96360663	96353815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_96353906_96356010_96356059_96360467
ENSMUST00000071320.6	chr13	-	894	4	FSM	ENSMUSG00000074830.5	ENSMUST00000071320.6	894	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	65.3469373591618	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAATGTAATCAATGTGGT	NA	False	NA	NA	False	NA	NA	NA	66846307	66818834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_66819455_66821007_66821069_66821267_66821395_66846221
ENSMUST00000071442.12	chr2	+	1485	9	FSM	ENSMUSG00000015094.17	ENSMUST00000071442.12	1485	9	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	4.24264068711928	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTTCTGGGTTCACTGA	3126	False	NA	12	True	ATTAAA	-20	NA	25293082	25299506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_25293378_25296226_25296374_25297607_25297749_25297852_25298027_25298125_25298193_25298271_25298360_25298618_25298699_25298916_25299014_25299110
ENSMUST00000071455.7	chr5	+	1741	6	FSM	ENSMUSG00000029344.16	ENSMUST00000071455.7	1741	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	131.441241625298	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112424572	112463221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_112424638_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ENSMUST00000071457.12	chr7	-	702	5	FSM	ENSMUSG00000030538.16	ENSMUST00000071457.12	702	5	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_4	297.709904941035	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2240	False	NA	-12	True	AATAAA	-15	NA	79882372	79876906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79882257
ENSMUST00000071462.7	chr15	-	1059	7	FSM	ENSMUSG00000022474.16	ENSMUST00000071462.7	1059	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	406.121355699938	551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845070	81835308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840369_81840462_81842096_81842112_81844915
ENSMUST00000071492.9	chr6	+	1643	3	FSM	ENSMUSG00000057497.9	ENSMUST00000071492.9	1643	3	0	0	0	0	multi-exon	FALSE	canonical	3	1740	junction_2	62	2223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTCTTATGGGTAGTG	8617	False	NA	32	True	AATAAA	-16	NA	86342627	86347040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_86342802_86343591_86343733_86345712
ENSMUST00000071539.10	chr11	-	2664	10	FSM	ENSMUSG00000041654.16	ENSMUST00000071539.10	2664	10	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_5	113.78341999899	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7769	False	NA	-2	True	AATAAA	-19	NA	113456582	113135678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
ENSMUST00000071544.11	chr4	+	942	6	FSM	ENSMUSG00000028483.14	ENSMUST00000071544.11	942	6	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	22.8875512014719	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTCTAGTCCCCTTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	83335967	83360323	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123
ENSMUST00000071555.13	chr11	-	1952	6	FSM	ENSMUSG00000062825.16	ENSMUST00000071555.13	1952	6	0	0	0	0	multi-exon	FALSE	canonical	3	5636	junction_4	454.292680988809	25178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	-21	True	AATAAA	-18	NA	120239368	120236515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
ENSMUST00000071561.7	chr4	-	1547	3	FSM	ENSMUSG00000036078.17	ENSMUST00000071561.7	1547	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	290.5	2891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTTCCTTATGTGTCTAA	3747	False	NA	NA	False	AATAAA	-17	NA	41741359	41738492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_41739581_41740775_41740977_41741101
ENSMUST00000071564.14	chr2	-	3567	21	FSM	ENSMUSG00000058594.16	ENSMUST00000071564.14	3567	21	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_20	31.6521721213569	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCAGTACTGTCATTT	NA	False	NA	-2	True	ATTAAA	-35	NA	11782393	11747385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782242
ENSMUST00000071664.12	chr3	-	1276	10	FSM	ENSMUSG00000005625.16	ENSMUST00000071664.12	1276	10	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_3	370.873576676127	14169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTCAAATAGTGATAGCT	NA	False	NA	-13	True	AATAAA	-22	NA	94949863	94940007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
ENSMUST00000071667.9	chrX	-	1712	4	FSM	ENSMUSG00000040749.12	ENSMUST00000071667.9	1712	4	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_3	112.11402925395	1207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCAGGTTTTTCTCACTT	NA	False	NA	-18	True	AATAAA	-15	NA	162859146	162853700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859110
ENSMUST00000071698.13	chr19	-	3228	12	FSM	ENSMUSG00000025198.17	ENSMUST00000071698.13	3228	12	0	0	0	0	multi-exon	TRUE	canonical	3	64	junction_11	39.5783562189201	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTGTGTTCTATTTTC	NA	False	NA	-2	True	AATAAA	-19	NA	44058214	44023382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058027
ENSMUST00000071704.4	chr12	+	875	11	FSM	ENSMUSG00000060073.10	ENSMUST00000071704.4	875	11	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_2	1129.97747322679	598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGATTTTCATTAAATTTTG	4814	False	NA	-25	True	NA	NA	NA	71021488	71041249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_71021542_71025506_71025590_71030097_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUST00000071745.4	chr6	+	943	1	FSM	ENSMUSG00000063171.5	ENSMUST00000071745.4	943	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42437	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	13	True	ATTAAA	-17	NA	148256153	148257096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_148256200_148257100
ENSMUST00000071792.7	chr15	+	1043	5	FSM	ENSMUSG00000063236.7	ENSMUST00000071792.7	1043	5	0	0	0	0	multi-exon	TRUE	canonical	1	74	junction_2	101.489839392917	1754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGGATGGTGTGAGAGA	NA	False	NA	21	True	AATAAA	-13	NA	76832705	76834929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76832745_76832828_76833120_76833267_76833353_76833743_76833891_76834448
ENSMUST00000071798.13	chr7	-	1027	14	FSM	ENSMUSG00000064179.14	ENSMUST00000071798.13	1027	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	20.2312079507856	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTGGGAGTACAACTTG	9181	False	NA	82	True	ATTAAA	-15	NA	4518974	4507568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950_4513068_4513315_4513380_4515263_4515283_4516579_4516613_4516809_4516837_4517211_4517226_4517335_4517379_4518929
ENSMUST00000071804.10	chr7	-	2671	4	FSM	ENSMUSG00000056383.11	ENSMUST00000071804.10	2671	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	27.3901847788988	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTTTTTCTGACTTTT	NA	False	NA	-14	True	AATAAA	-25	NA	41042684	41022346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_41024799_41025914_41025973_41026169_41026297_41042650
ENSMUST00000071841.7	chr17	-	2100	12	FSM	ENSMUSG00000063576.13	ENSMUST00000071841.7	2100	12	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_11	42.5343808432544	658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	False	NA	0	True	TATAAA	-17	NA	46991830	46985475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
ENSMUST00000071848.7	chrX	+	842	6	FSM	ENSMUSG00000062170.13	ENSMUST00000071848.7	842	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	319.056484027515	2733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805539	67848173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_67805838_67807537_67807616_67812561_67812700_67815650_67815748_67847210_67847300_67848031
ENSMUST00000071858.5	chr12	+	1526	4	FSM	ENSMUSG00000071379.3	ENSMUST00000071858.5	1526	4	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	8.52447456836295	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGAGTTTCCTGTGT	8624	False	NA	17	True	AATAAA	-5	NA	17740856	17841934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_17741048_17836147_17836550_17837545_17837652_17841107
ENSMUST00000071876.13	chr15	-	997	5	FSM	ENSMUSG00000064284.13	ENSMUST00000071876.13	997	5	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_4	106.509389257473	1100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	8086	False	NA	0	True	ATTAAA	-15	NA	85695897	85691172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102_85695250_85695839
ENSMUST00000071881.10	chr5	+	952	4	FSM	ENSMUSG00000036639.13	ENSMUST00000071881.10	952	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	90.7450641449256	1916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317614	140323892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_140317711_140320209_140320375_140321067_140321214_140323347
ENSMUST00000071891.12	chr11	+	2771	25	FSM	ENSMUSG00000020549.15	ENSMUST00000071891.12	2771	25	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_24	61.5767221304718	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTTGACAACAGTTTGTA	NA	False	NA	10	True	AATAAA	-18	NA	64869863	64892895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820_64892040_64892657
ENSMUST00000071921.13	chr5	-	3806	18	FSM	ENSMUSG00000042508.17	ENSMUST00000071921.13	3806	18	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_6	37.7529760049699	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGAGAATTCCTTGCT	NA	False	NA	66	True	NA	NA	NA	9211776	9168800	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176750_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
ENSMUST00000071926.5	chr13	+	1800	8	FSM	ENSMUSG00000063200.5	ENSMUST00000071926.5	1800	8	0	0	0	0	multi-exon	FALSE	canonical	3	1274	junction_1	87.1250567299906	14629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGACATGTAATACTGT	NA	False	NA	NA	False	AATAAA	-14	NA	43551865	43556337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_43552135_43552210_43552272_43552986_43553046_43554068_43554098_43554328_43554411_43554772_43554895_43554975_43555054_43555237
ENSMUST00000071986.13	chr7	-	566	4	FSM	ENSMUSG00000089661.10	ENSMUST00000071986.13	566	4	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	9.2736184954957	1598	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTCTCTTTGGTTTTTG	NA	False	NA	0	True	AATACA	-18	NA	26880574	26879166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_26879260_26879593_26879705_26880124_26880259_26880346
ENSMUST00000071991.6	chr9	-	619	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	0	0	0	0	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	1582915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78275459	78274333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_78274577_78275002_78275186_78275266
ENSMUST00000072020.9	chr10	-	2015	14	FSM	ENSMUSG00000034758.13	ENSMUST00000072020.9	2015	14	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_10	15.2183321404185	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTTGTCCTTTACCCA	NA	False	NA	-15	True	NA	NA	NA	81436734	81426738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
ENSMUST00000072040.7	chr12	+	1509	13	FSM	ENSMUSG00000021115.16	ENSMUST00000072040.7	1509	13	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_12	159.966901958568	2640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAATCTTTAGTCGTCA	NA	False	NA	NA	False	ATTAAA	-42	NA	105976486	106041479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106041265
ENSMUST00000072119.15	chr13	-	2489	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	0	0	0	0	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	8916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGGTCGGCCAACTCCC	NA	False	NA	76	True	AATAAA	-19	NA	100923078	100915157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
ENSMUST00000072154.9	chr12	-	2339	4	FSM	ENSMUSG00000021120.12	ENSMUST00000072154.9	2339	4	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	16.0485374896143	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGACTTGTTTTTTTAT	NA	False	NA	-1	True	AATAAA	-30	NA	79136425	79127437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_79129271_79130389_79130474_79132420_79132631_79136213
ENSMUST00000072167.10	chrX	+	799	4	FSM	ENSMUSG00000096788.9	ENSMUST00000072167.10	799	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	24.1246761636296	1672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36712104	36723466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_36712216_36712377_36712790_36720942_36720989_36723236
ENSMUST00000072232.9	chr9	-	3667	10	FSM	ENSMUSG00000058587.10	ENSMUST00000072232.9	3667	10	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_2	36.4461381720248	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGCTGTATGCCACATTA	NA	False	NA	71	True	AATAAA	-30	NA	75466939	75404988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75466781
ENSMUST00000072235.10	chr1	-	646	9	FSM	ENSMUSG00000060715.10	ENSMUST00000072235.10	646	9	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	9.08209089362136	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAGAATGGAATTGCTT	NA	False	NA	NA	False	AATAAA	-28	NA	53226795	53197735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_53197948_53202384_53202405_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53224373_53224450_53226712
ENSMUST00000072376.13	chr18	+	3040	9	FSM	ENSMUSG00000060450.15	ENSMUST00000072376.13	3040	9	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_3	53.7248487666555	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGACACGGTGTCCTGTTG	926	False	NA	23	True	AATAAA	-28	NA	38429687	38450902	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_38429852_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ENSMUST00000072465.9	chr9	+	1425	6	FSM	ENSMUSG00000057982.9	ENSMUST00000072465.9	1425	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	52.9694251431899	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCCTTGGTTGTGTTTTG	797	False	NA	14	True	NA	NA	NA	22137066	22154650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837_22150550_22154329
ENSMUST00000072503.13	chr7	+	679	6	FSM	ENSMUSG00000059070.17	ENSMUST00000072503.13	679	6	0	0	0	0	multi-exon	FALSE	canonical	3	6098	junction_1	973.20817916826	228432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTGTGTTCATTCATGAA	5922	False	NA	16	True	AATAAA	-23	NA	45367494	45370259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
ENSMUST00000072554.13	chr4	+	2528	10	FSM	ENSMUSG00000059939.14	ENSMUST00000072554.13	2528	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_5	55.1321644374276	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8255	False	NA	22	True	NA	NA	NA	156194438	156211722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
ENSMUST00000072566.5	chr11	-	734	4	FSM	ENSMUSG00000020857.12	ENSMUST00000072566.5	734	4	0	0	0	0	multi-exon	FALSE	canonical	3	6715	junction_3	620.302256072706	17629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGCAGTGTTCAGTAC	NA	False	NA	-31	True	NA	NA	NA	93846609	93840642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320
ENSMUST00000072576.10	chr18	+	876	5	FSM	ENSMUSG00000014504.17	ENSMUST00000072576.10	876	5	0	0	0	0	multi-exon	FALSE	canonical	3	833	junction_3	511.998291012773	10049	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAGTAGCTTTCACTTAG	NA	False	NA	4	True	AATAAA	-14	NA	34464197	34469652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_34464313_34464802_34464879_34467345_34467418_34467509_34467622_34469151
ENSMUST00000072581.9	chr11	+	1311	11	FSM	ENSMUSG00000023170.15	ENSMUST00000072581.9	1311	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	101.623816106265	1028	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTACCCACCATCATG	3929	False	NA	-3	True	AATAAA	-7	NA	69804713	69807402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69804901_69805098_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
ENSMUST00000072621.12	chr11	-	3324	14	FSM	ENSMUSG00000038909.17	ENSMUST00000072621.12	3324	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	277.302283100983	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95200428	95165084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200362
ENSMUST00000072634.15	chr9	-	3634	17	FSM	ENSMUSG00000031996.18	ENSMUST00000072634.15	3634	17	0	0	0	0	multi-exon	FALSE	canonical	3	712	junction_10	199.562020434751	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8739	False	NA	-9	True	AATAAA	-19	NA	31123087	31060852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
ENSMUST00000072662.12	chr7	+	1980	6	FSM	ENSMUSG00000058028.15	ENSMUST00000072662.12	1980	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.49799919935936	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCATTGATTGACTTATT	3080	False	NA	NA	False	ATTAAA	-22	NA	6225276	6242422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_6225336_6227584_6227759_6233070_6233538_6234335_6234537_6236813_6236968_6241497
ENSMUST00000072697.13	chr3	-	2047	12	FSM	ENSMUSG00000062908.13	ENSMUST00000072697.13	2047	12	0	0	0	0	multi-exon	FALSE	canonical	3	875	junction_11	59.2580851965116	9958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	NA	False	NA	-6	True	AATAAA	-16	NA	153650269	153627993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
ENSMUST00000072699.13	chrX	+	1571	5	FSM	ENSMUSG00000015217.12	ENSMUST00000072699.13	1571	5	0	0	0	0	multi-exon	FALSE	canonical	3	598	junction_1	126.240593708997	4223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599523	70604282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_70599615_70601658_70601814_70602038_70602179_70602703_70602879_70603272
ENSMUST00000072725.12	chr7	-	776	4	FSM	ENSMUSG00000035642.17	ENSMUST00000072725.12	776	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	25.8069758011279	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAGAGCATTAGCGATCT	NA	False	NA	NA	False	AATAAA	-28	NA	97228686	97199540	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_97199949_97214357_97214508_97224794_97224899_97228572
ENSMUST00000072727.7	chr7	+	2285	16	Antisense	novelGene_ENSMUSG00000065118.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2635	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGCCGTGGTCGCCAACAA	581	False	NA	NA	False	GGGGCT	-3	NA	143067315	143102829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr7_+_143068375_143072586_143072623_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
ENSMUST00000072744.15	chr12	-	2524	20	FSM	ENSMUSG00000021038.18	ENSMUST00000072744.15	2524	20	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	8.24352343784865	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTTCCCCATCTGGTTA	NA	False	NA	-10	True	AATAAA	-21	NA	87313030	87285646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_87286611_87288010_87288116_87288710_87288801_87289259_87289347_87291228_87291319_87291613_87291656_87292902_87293038_87293592_87293669_87296161_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87301003_87301061_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
ENSMUST00000072750.13	chr5	-	1537	7	FSM	ENSMUSG00000000568.16	ENSMUST00000072750.13	1537	7	0	0	0	0	multi-exon	FALSE	canonical	3	1409	junction_2	1330.01989333493	886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGGCTCTTTTATCAT	NA	False	NA	NA	False	AATAAA	-17	NA	100126794	100108860	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_100109193_100110373_100110472_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100126250
ENSMUST00000072751.13	chr10	+	1444	5	FSM	ENSMUSG00000078440.11	ENSMUST00000072751.13	1444	5	0	0	0	0	multi-exon	FALSE	canonical	3	742	junction_3	32.2286751201473	3481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGGCTCCTGCTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	81220261	81224186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_81220413_81221552_81221882_81222246_81222324_81223073_81223315_81223540
ENSMUST00000072838.6	chr15	+	2018	12	FSM	ENSMUSG00000022556.12	ENSMUST00000072838.6	2018	12	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_10	77.0148638653497	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACATACATACATACATATA	7144	False	NA	12	True	NA	NA	NA	76361644	76385172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384466_76384537_76384616
ENSMUST00000072841.12	chr11	+	1454	12	FSM	ENSMUSG00000060600.16	ENSMUST00000072841.12	1454	12	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_1	14.3486688414174	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGTGTTCCTTAGGA	7113	False	NA	13	True	AATAAA	-16	NA	70548027	70553339	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70548094_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
ENSMUST00000072847.12	chr18	+	3002	7	FSM	ENSMUSG00000024317.16	ENSMUST00000072847.12	3002	7	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	148.868416917611	1203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGTGTGTCTTAATTAAA	NA	False	NA	2	True	ATTAAA	-14	NA	21134397	21161280	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
ENSMUST00000072875.15	chr3	-	2654	12	FSM	ENSMUSG00000055436.19	ENSMUST00000072875.15	2654	12	0	0	0	0	multi-exon	FALSE	canonical	3	573	junction_1	36.7913482463625	1129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGCTTCTGTAGAGCTG	NA	False	NA	-27	True	AATAAA	-17	NA	157737403	157716555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088
ENSMUST00000072896.13	chr5	+	2221	6	FSM	ENSMUSG00000038525.17	ENSMUST00000072896.13	2221	6	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_5	40.0679422980517	1159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCCAATTTGTTTTAT	NA	False	NA	6	True	AGTAAA	-26	NA	21850876	21867692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
ENSMUST00000072916.5	chr11	-	732	5	FSM	ENSMUSG00000014243.6	ENSMUST00000072916.5	732	5	0	0	0	0	multi-exon	TRUE	canonical	3	218	junction_4	57.8986182909402	3128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATCAAGTTATTGAAGT	NA	False	NA	-15	True	AATAAA	-25	NA	62172201	62158049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_62158433_62159529_62159635_62164537_62164641_62167443_62167466_62172082
ENSMUST00000072933.13	chr6	-	1272	12	FSM	ENSMUSG00000059900.15	ENSMUST00000072933.13	1272	12	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_11	22.1650458199018	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTCGACTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	115735960	115706101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115718501_115718634_115719270_115719349_115735898
ENSMUST00000072961.6	chr13	+	3199	29	FSM	ENSMUSG00000041236.9	ENSMUST00000072961.6	3199	29	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_25	60.5186237990473	628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTATTGTGTTGCAAGC	NA	False	NA	23	True	AATAAA	-22	NA	18901459	19050981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
ENSMUST00000072965.5	chr7	+	1843	16	FSM	ENSMUSG00000015149.15	ENSMUST00000072965.5	1843	16	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	28.236776649532	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGACTTGTGTGGCCTCT	NA	False	NA	12	True	ATTAAA	-21	NA	28466191	28488085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28466293_28467056_28467104_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
ENSMUST00000073025.12	chr1	+	1706	8	FSM	ENSMUSG00000026150.15	ENSMUST00000073025.12	1706	8	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_5	154.121870675152	962	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCAATGTCTATGGAAAG	NA	False	NA	10	True	AATAAA	-10	NA	82702639	82730108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713136_82713229_82724803_82724864_82728240_82728326_82729305
ENSMUST00000073067.11	chrX	-	1910	2	FSM	ENSMUSG00000032806.14	ENSMUST00000073067.11	1910	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCTCGGGTCCCTTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	73416911	73412822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_73414618_73416796
ENSMUST00000073120.11	chr1	-	1821	13	FSM	ENSMUSG00000062729.13	ENSMUST00000073120.11	1821	13	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_8	32.2076595444831	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5189	False	NA	-15	True	AGTAAA	-16	NA	171108760	171104564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171107149_171107442_171107576_171107713_171107830_171107961_171108097_171108247_171108343_171108446
ENSMUST00000073128.7	chr11	+	2977	7	FSM	ENSMUSG00000013646.18	ENSMUST00000073128.7	2977	7	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	22.1716786313832	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTTTACTGTCTGTTAA	469	False	NA	16	True	AATAAA	-17	NA	58221575	58238551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_58221619_58222079_58222690_58228562_58228626_58228774_58228904_58232111_58232274_58236137_58236312_58236755
ENSMUST00000073228.12	chr2	+	2669	5	FSM	ENSMUSG00000027463.15	ENSMUST00000073228.12	2669	5	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	24.8294180358703	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGACTTGTGTGCTCAC	NA	False	NA	18	True	NA	NA	NA	151838454	151851178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_151838572_151845971_151846599_151847451_151847940_151849400_151849525_151849865
ENSMUST00000073308.11	chr11	-	2269	15	FSM	ENSMUSG00000009079.17	ENSMUST00000073308.11	2269	15	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	1383.04088950429	6028	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTGTCATCCTCCTCC	NA	False	NA	-22	True	AATAAA	-14	NA	5049067	5019697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028580_5032283_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ENSMUST00000073339.7	chrX	+	1857	3	FSM	ENSMUSG00000006373.11	ENSMUST00000073339.7	1857	3	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_1	42	2492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGAGGCTTTCATTTT	1668	False	NA	NA	False	AATAAA	-15	NA	35861858	35869732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_35862268_35865773_35865930_35868440
ENSMUST00000073352.10	chr2	+	2690	4	FSM	ENSMUSG00000062175.14	ENSMUST00000073352.10	2690	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	80.1373820385967	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156682019	156697490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_156682159_156686075_156686302_156695048_156695149_156695265
ENSMUST00000073388.13	chr11	+	2327	11	FSM	ENSMUSG00000017718.16	ENSMUST00000073388.13	2327	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	8.17312669668102	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGGTTTTCTGTTTGTTT	NA	False	NA	15	True	NA	NA	NA	117716749	117730734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_117716833_117718904_117718996_117723170_117723276_117723353_117723403_117725592_117725679_117725771_117725845_117725970_117726069_117726328_117726408_117726491_117726634_117727233_117727339_117729318
ENSMUST00000073392.11	chrX	-	2926	17	FSM	ENSMUSG00000031174.18	ENSMUST00000073392.11	2926	17	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	17.609368067878	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGCTTGGAAGTATTT	NA	False	NA	0	True	AATAAA	-32	NA	10083159	10024454	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
ENSMUST00000073410.12	chr7	-	1430	4	FSM	ENSMUSG00000090744.8	ENSMUST00000073410.12	1430	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_3	48.9285192909003	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAATCACTGTGGTGAAG	NA	False	NA	NA	False	NA	NA	NA	41210253	41195097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_41196224_41197139_41197201_41197407_41197535_41210137
ENSMUST00000073428.7	chr15	-	2063	11	FSM	ENSMUSG00000063354.8	ENSMUST00000073428.7	2063	11	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	124.203099800287	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8666	False	NA	-2	True	AATAAA	-21	NA	76501048	76496582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
ENSMUST00000073430.14	chr19	+	2112	10	FSM	ENSMUSG00000010110.18	ENSMUST00000073430.14	2112	10	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_5	5.51764845241562	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6939	False	NA	12	True	NA	NA	NA	8719166	8733006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
ENSMUST00000073456.9	chr13	-	2700	6	FSM	ENSMUSG00000060739.9	ENSMUST00000073456.9	2700	6	0	0	0	0	multi-exon	FALSE	canonical	3	555	junction_1	171.768914533451	13480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTGTGGTCTAACAGT	NA	False	NA	NA	False	AATAAA	-14	NA	97274445	97265931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_97267737_97268350_97268544_97270046_97270227_97271801_97271953_97272028_97272217_97274262
ENSMUST00000073471.13	chr11	+	526	4	FSM	ENSMUSG00000060938.15	ENSMUST00000073471.13	526	4	0	0	0	0	multi-exon	FALSE	canonical	3	13360	junction_1	1585.12172683642	354734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCTTGTGTGGTGTT	NA	False	NA	33	True	ATTAAA	-14	NA	68792408	68795360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_68792451_68793095_68793269_68794004_68794146_68795190
ENSMUST00000073488.12	chr7	-	1999	10	FSM	ENSMUSG00000060601.14	ENSMUST00000073488.12	1999	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	207.457626195488	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGCCCAGTGTGGAG	NA	False	NA	0	True	AATAAA	-31	NA	44203373	44199039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202179_44203002_44203133_44203232
ENSMUST00000073551.6	chr12	+	1958	3	FSM	ENSMUSG00000042063.12	ENSMUST00000073551.6	1958	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	2	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTTGTGTAATGTCCT	NA	False	NA	17	True	NA	NA	NA	116011343	116024212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_116011487_116018341_116018469_116022524
ENSMUST00000073570.12	chr17	+	1197	6	FSM	ENSMUSG00000073423.11	ENSMUST00000073570.12	1197	6	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	31.6569107779012	1964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGAGTGCTCTTCTCCG	4917	False	NA	92	True	NA	NA	NA	33848063	33850753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
ENSMUST00000073674.3	chrX	-	299	3	FSM	ENSMUSG00000060726.11	ENSMUST00000073674.3	299	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	1	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGGCTTGTTTTTGTAA	NA	False	NA	NA	False	AATAAA	-26	NA	134621422	134619415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_134619503_134620414_134620520_134621315
ENSMUST00000073691.5	chr15	-	4243	11	FSM	ENSMUSG00000023022.15	ENSMUST00000073691.5	4243	11	0	0	0	0	multi-exon	FALSE	canonical	3	692	junction_4	128.449367456597	1056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGTGTCCACACTGCT	7238	False	NA	-3	True	AATAAA	-15	NA	99773337	99676350	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_99679172_99681400_99681535_99692289_99692400_99694622_99694681_99699991_99700094_99704303_99704453_99705539_99705625_99717374_99717840_99724672_99724719_99741555_99741705_99773213
ENSMUST00000073787.7	chr4	+	1288	7	FSM	ENSMUSG00000028743.8	ENSMUST00000073787.7	1288	7	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_5	35.9787746070127	728	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCGTCTCCTCTGCTGCCC	NA	False	NA	29	True	AATAAA	-40	NA	139038054	139045737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_139038388_139041414_139041603_139041777_139041883_139044020_139044118_139044244_139044345_139044880_139045011_139045402
ENSMUST00000073791.10	chr11	-	659	6	FSM	ENSMUSG00000034566.11	ENSMUST00000073791.10	659	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	1301.70156333931	53198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310788	115306514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309377_115310717
ENSMUST00000073868.9	chr10	+	885	8	FSM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	0	0	0	0	multi-exon	FALSE	canonical	3	9741	junction_1	845.476607528293	123367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGGTGCTAGATCTT	4912	False	NA	0	True	AATAAA	-24	NA	127871443	127884502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
ENSMUST00000073881.8	chr4	+	1052	8	FSM	ENSMUSG00000006392.17	ENSMUST00000073881.8	1052	8	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	317.693473110706	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCTGCCATTCCTTGTCC	NA	False	NA	30	True	NA	NA	NA	118266551	118272306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_118266584_118268081_118268201_118268722_118268771_118268854_118269000_118269548_118269690_118269860_118269943_118270823_118270923_118271920
ENSMUST00000073909.6	chr6	+	1748	9	FSM	ENSMUSG00000041477.15	ENSMUST00000073909.6	1748	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	19.2447233027654	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAAATGTTTTATACTGT	NA	False	NA	-12	True	NA	NA	NA	119152248	119197146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_119152404_119157025_119157067_119160610_119160739_119175888_119175956_119177782_119177913_119183430_119183560_119191730_119192568_119194862_119194941_119196963
ENSMUST00000073926.8	chr10	-	490	7	FSM	ENSMUSG00000061983.8	ENSMUST00000073926.8	490	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1773.5106192709	330623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTGATTTTTCTCTTG	NA	False	NA	-25	True	AATAAA	-6	NA	23663086	23661102	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522_23662538_23662661_23662779_23662891_23662943_23663053
ENSMUST00000073927.5	chrX	-	2232	12	FSM	ENSMUSG00000031297.15	ENSMUST00000073927.5	2232	12	0	0	0	0	multi-exon	FALSE	canonical	3	1250	junction_11	82.5987012884915	868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACCAAAAAACC	NA	False	NA	NA	False	ATTAAA	-11	NA	100128978	100122827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
ENSMUST00000074043.7	chr15	-	3044	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	0	0	0	0	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	1970	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGAGTCTGTTGTATG	NA	False	NA	-7	True	AATAAA	-18	NA	38300950	38294656	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
ENSMUST00000074072.5	chr13	-	561	1	FSM	ENSMUSG00000069117.5	ENSMUST00000074072.5	561	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	66413	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACCAATCAGATTCGAGA	NA	False	NA	NA	False	AATAAA	-33	NA	97897140	97896579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_97896600_97897100
ENSMUST00000074077.12	chr14	-	2064	4	FSM	ENSMUSG00000021835.16	ENSMUST00000074077.12	2064	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	6.0184900284226	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGACCTTTCTATCTTAT	6365	False	NA	NA	False	AATAAA	-25	NA	46628126	46620976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_46622170_46623171_46623552_46624612_46624738_46627760
ENSMUST00000074082.13	chr9	-	2129	11	FSM	ENSMUSG00000032786.17	ENSMUST00000074082.13	2129	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	54.5879107495423	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATAGTCCTGGTTAGTGTG	8576	False	NA	-14	True	AATAAA	-31	NA	106125055	106111125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_106111397_106112586_106112750_106113638_106113908_106115273_106115436_106115841_106116022_106116730_106116916_106118314_106118538_106118834_106118985_106120360_106120595_106123957_106124178_106124983
ENSMUST00000074085.12	chrX	+	855	6	FSM	ENSMUSG00000008682.14	ENSMUST00000074085.12	855	6	0	0	0	0	multi-exon	FALSE	canonical	3	7516	junction_1	832.521615335001	363353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTCTGATTCTT	NA	False	NA	12	True	AATAAA	-22	NA	73314465	73316741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
ENSMUST00000074127.14	chr11	-	3091	10	FSM	ENSMUSG00000010025.20	ENSMUST00000074127.14	3091	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	16.3435342295084	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTGTGTGTTAATTTTGA	1333	False	NA	NA	False	AATAAA	-14	NA	61158011	61135678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_61137148_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679
ENSMUST00000074141.14	chr17	+	736	3	FSM	ENSMUSG00000002661.15	ENSMUST00000074141.14	736	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	221	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAGCAAGCAAAGAAAGA	367	False	NA	NA	False	NA	NA	NA	57304338	57306311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57304568_57305670_57305796_57305929
ENSMUST00000074156.7	chr2	+	1567	13	FSM	ENSMUSG00000026807.9	ENSMUST00000074156.7	1567	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.54405625374562	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAGCCTTCTTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	28590175	28703177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_28590287_28592700_28592786_28599938_28599989_28602286_28602401_28606428_28606498_28623818_28623901_28624385_28624458_28625514_28625716_28629544_28629677_28632671_28632762_28649953_28650096_28699671_28699753_28702839
ENSMUST00000074246.7	chr9	-	3130	7	FSM	ENSMUSG00000057367.13	ENSMUST00000074246.7	3130	7	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_2	23.4781222039204	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTGTTTCTGATGTGA	1782	False	NA	-10	True	AATAAA	-12	NA	7835256	7818236	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_7818945_7819021_7819064_7819307_7819563_7820974_7821221_7825615_7825665_7826931_7827011_7833505
ENSMUST00000074259.15	chr17	+	1466	4	FSM	ENSMUSG00000059791.15	ENSMUST00000074259.15	1466	4	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	13.2748718344933	1326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTTGTCTGTCCATGAC	4589	False	NA	24	True	AATAAA	-18	NA	36172209	36176294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_36172410_36174330_36174528_36175003_36175181_36175402
ENSMUST00000074267.5	chr12	-	954	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	0	0	0	0	multi-exon	TRUE	canonical	3	10789	junction_4	2567.89392736971	4426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTTATGTCCTATTCTG	NA	False	NA	-7	True	NA	NA	NA	28685952	28680852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
ENSMUST00000074455.9	chr7	-	2777	5	FSM	ENSMUSG00000066838.8	ENSMUST00000074455.9	2777	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	7.29725975966321	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCATGACTATTGTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	7212997	7205115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_7207359_7208511_7208599_7209244_7209372_7210523_7210563_7212716
ENSMUST00000074519.13	chr3	+	2827	8	FSM	ENSMUSG00000038393.15	ENSMUST00000074519.13	2827	8	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	78.2390371795021	1057	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGATACTGGAGAAGTTAC	NA	False	NA	45	True	AATAAA	-40	NA	96465272	96469199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96465802_96466204_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
ENSMUST00000074525.10	chr1	+	3138	11	FSM	ENSMUSG00000056870.10	ENSMUST00000074525.10	3138	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_7	3.104834939252	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATGATATGCTCACTTA	NA	False	NA	NA	False	AATAAA	-20	NA	44590670	44835998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_44591033_44728303_44728376_44747776_44747839_44783633_44783706_44793502_44793602_44805173_44805312_44812430_44812548_44813212_44813306_44820127_44820267_44827607_44827703_44834109
ENSMUST00000074556.7	chr6	+	1831	1	FSM	ENSMUSG00000060032.7	ENSMUST00000074556.7	1831	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	288086	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGACAGTGTTTGATT	NA	False	NA	NA	False	AATAAA	-19	NA	136785241	136787072	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_136785200_136787100
ENSMUST00000074575.11	chr7	-	1735	10	FSM	ENSMUSG00000063511.12	ENSMUST00000074575.11	1735	10	0	0	0	0	multi-exon	FALSE	canonical	3	1192	junction_9	143.840189098875	7410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGATGTCTTACTGCACT	9041	False	NA	0	True	AATAAA	-25	NA	45045166	45025876	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
ENSMUST00000074613.4	chr11	-	863	4	FSM	ENSMUSG00000060923.6	ENSMUST00000074613.4	863	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	6.84754619472471	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTACTGTTGCCTA	NA	False	NA	NA	False	AATAAA	-15	NA	30599587	30455990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_30456440_30582207_30582318_30583685_30583703_30599300
ENSMUST00000074619.6	chrX	-	1645	9	FSM	ENSMUSG00000057836.13	ENSMUST00000074619.6	1645	9	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_7	340.598531081683	5292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	-7	True	AATAAA	-16	NA	72140701	72129900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138566_72138689_72140586
ENSMUST00000074628.13	chr11	-	1826	8	FSM	ENSMUSG00000034341.18	ENSMUST00000074628.13	1826	8	0	0	0	0	multi-exon	FALSE	canonical	3	961	junction_1	94.6975852546475	2519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCTCTGACTCTTGTGTG	NA	False	NA	-11	True	AGTAAA	-16	NA	115977821	115969398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115970423_115970533_115970611_115971047_115971171_115971371_115971507_115972057_115972151_115973101_115973238_115974664_115974774_115977692
ENSMUST00000074680.8	chr13	+	795	1	FSM	ENSMUSG00000059751.8	ENSMUST00000074680.8	795	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	155191	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAGATTTTTAATAGTG	NA	False	NA	NA	False	NA	NA	NA	108807136	108807931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_108807100_108807900
ENSMUST00000074792.7	chr9	+	2042	9	FSM	ENSMUSG00000059183.13	ENSMUST00000074792.7	2042	9	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_5	22.1472345903501	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGGCCTGCCCAGGG	NA	False	NA	NA	False	NA	NA	NA	65343063	65360336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627_65347731_65348894_65348971_65351160_65351253_65354505_65354585_65355977_65356061_65359286
ENSMUST00000074846.14	chr5	-	3240	17	FSM	ENSMUSG00000029657.16	ENSMUST00000074846.14	3240	17	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	344.38590613402	846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTTGGCTTTGTCTCC	NA	False	NA	-6	True	AATAAA	-24	NA	149559674	149540309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
ENSMUST00000074876.13	chr7	+	2537	4	FSM	ENSMUSG00000058402.15	ENSMUST00000074876.13	2537	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	4.02768199119819	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAGCTGCTATTTTCATT	NA	False	NA	NA	False	CATAAA	-1	NA	29559403	29575930	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_29559519_29560440_29560494_29572316_29572359_29573603
ENSMUST00000074919.11	chr18	+	3070	14	FSM	ENSMUSG00000024283.16	ENSMUST00000074919.11	3070	14	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	117.532571338518	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAACACATTTTGTTAC	7	True	NA	NA	False	AATAAA	-8	NA	7868849	7927067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_7869092_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7910515_7910825_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
ENSMUST00000074941.8	chr18	+	3040	3	FSM	ENSMUSG00000063281.10	ENSMUST00000074941.8	3040	3	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	18.5	703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATTTCTTACTGGGACA	1059	False	NA	NA	False	AATAAA	-26	NA	24122688	24138433	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_24122789_24123234_24123448_24135706
ENSMUST00000074950.11	chrX	+	2426	3	FSM	ENSMUSG00000045427.14	ENSMUST00000074950.11	2426	3	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_2	148.5	2207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATCTTGCATAGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	133501927	133507803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_133502083_133503440_133503512_133505603
ENSMUST00000074963.9	chr2	+	1468	12	FSM	ENSMUSG00000063145.11	ENSMUST00000074963.9	1468	12	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_4	9.81144550053239	280	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATGTTTTGAAAGTATTA	NA	False	NA	6	True	AATAAA	-20	NA	69477551	69497915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_69477687_69479365_69479449_69483125_69483192_69484406_69484457_69484589_69484718_69485842_69485979_69487240_69487337_69491379_69491443_69493369_69493505_69495369_69495454_69497284_69497309_69497447
ENSMUST00000075068.14	chr7	+	1881	15	FSM	ENSMUSG00000063931.15	ENSMUST00000075068.14	1881	15	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	31.3925930429327	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGCCCATCTTCCTC	NA	False	NA	14	True	AATAAA	-19	NA	34611803	34744133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_34611880_34620753_34620938_34623805_34623934_34634106_34634171_34642063_34642112_34645011_34645074_34653982_34654028_34668929_34669006_34671081_34671129_34720389_34720459_34721117_34721196_34730767_34730917_34740095_34740281_34743114_34743307_34743655
ENSMUST00000075162.5	chr7	+	954	5	FSM	ENSMUSG00000063903.6	ENSMUST00000075162.5	954	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	17.0934929139717	497	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAAGTTCTGACATTCTC	NA	False	NA	7	True	AATAAA	-21	NA	43874783	43879042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_43874949_43876944_43877105_43877951_43878239_43878334_43878472_43878837
ENSMUST00000075175.12	chr8	-	671	5	FSM	ENSMUSG00000058833.12	ENSMUST00000075175.12	671	5	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_4	53.0518614188041	10446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70959402	70956944	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70959146_70959230_70959311
ENSMUST00000075221.3	chr11	+	2272	3	FSM	ENSMUSG00000058755.4	ENSMUST00000075221.3	2272	3	0	0	0	0	multi-exon	TRUE	canonical	3	46	junction_2	1.5	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTCAGTCTTTTAT	8293	False	NA	5	True	TTTAAA	-18	NA	4186419	4191026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_4186914_4188405_4188543_4189385
ENSMUST00000075280.12	chr19	-	1018	8	FSM	ENSMUSG00000034321.15	ENSMUST00000075280.12	1018	8	0	0	0	0	multi-exon	FALSE	canonical	3	822	junction_7	62.4257926808842	2346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTGGAAAAAATTCTTT	NA	False	NA	-33	True	TATAAA	-22	NA	41921735	41912004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921487_41921604_41921690
ENSMUST00000075303.7	chr6	-	1928	8	FSM	ENSMUSG00000058979.8	ENSMUST00000075303.7	1928	8	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_3	16.3245151817249	443	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTCTTGTGAGGATT	NA	False	NA	35	True	ATTAAA	-21	NA	120508280	120486454	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_120487424_120487591_120487781_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
ENSMUST00000075363.10	chr4	+	1457	9	FSM	ENSMUSG00000028937.15	ENSMUST00000075363.10	1457	9	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_1	55.2466062306093	1487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCCTAGGTGGTCATTT	NA	False	NA	17	True	AATAAA	-22	NA	152262590	152356309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_152262798_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
ENSMUST00000075418.15	chr7	+	2483	6	FSM	ENSMUSG00000046027.18	ENSMUST00000075418.15	2483	6	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_5	19.4566184112245	925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGAGTTCCTCATTTA	NA	False	NA	NA	False	ATTAAA	-23	NA	83281166	83291536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_83281348_83281943_83281994_83282337_83282471_83285958_83286077_83286811_83286906_83289629
ENSMUST00000075447.14	chr7	-	2735	9	FSM	ENSMUSG00000062300.15	ENSMUST00000075447.14	2735	9	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_4	306.654528745297	4326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGAAGTGAGTGGGGT	NA	False	NA	-2	True	GATAAA	-18	NA	19483498	19450568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19451713_19453120_19453208_19453357_19453422_19455277_19455432_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
ENSMUST00000075451.12	chr1	-	1651	10	FSM	ENSMUSG00000016481.16	ENSMUST00000075451.12	1651	10	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_9	54.0893179933677	998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTGTGGTTCATACTT	NA	False	NA	-1	True	AATAAA	-19	NA	194813869	194786097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813495
ENSMUST00000075453.9	chr5	+	899	6	FSM	ENSMUSG00000041453.13	ENSMUST00000075453.9	899	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	5104.64844626934	20374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGAAGTGTTTTCCTTA	NA	False	NA	1	True	AATAAA	-15	NA	146770004	146772795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_146770377_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUST00000075491.14	chr8	+	1698	9	FSM	ENSMUSG00000019428.17	ENSMUST00000075491.14	1698	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	448.998590615828	2715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTTCTAGGCCTCTT	NA	False	NA	25	True	AATAAA	-17	NA	70980396	70987976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ENSMUST00000075550.4	chr13	-	1251	9	FSM	ENSMUSG00000045273.9	ENSMUST00000075550.4	1251	9	0	0	0	0	multi-exon	TRUE	canonical	3	285	junction_6	26.2865816530031	3343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCAGGACTGGAGAGATG	NA	False	NA	1	True	AATAAA	-41	NA	100912407	100896181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
ENSMUST00000075610.13	chr7	+	1135	6	FSM	ENSMUSG00000063179.14	ENSMUST00000075610.13	1135	6	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	32.2713495224479	1875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGATTTGGATAAATTT	NA	False	NA	22	True	ATTAAA	-22	NA	130972869	130989568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_130973119_130975264_130975560_130975793_130975993_130985653_130985730_130986228_130986323_130989346
ENSMUST00000075630.10	chr15	-	441	4	FSM	ENSMUSG00000062683.12	ENSMUST00000075630.10	441	4	0	0	0	0	multi-exon	FALSE	canonical	3	4680	junction_1	53.4935094712953	15842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCTGTCTCCACTTCCA	7279	False	NA	NA	False	GGGGCT	-44	NA	102576184	102571448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_102571564_102573488_102573683_102574197_102574291_102576145
ENSMUST00000075641.10	chr11	-	1633	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	0	0	0	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	309620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACTCAGTGGATAGT	NA	False	NA	NA	False	AATACA	-9	NA	33113206	33102286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUST00000075654.2	chrX	+	525	2	FSM	ENSMUSG00000059690.2	ENSMUST00000075654.2	525	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGCCTGTCTCTGTGTTCT	NA	False	NA	NA	False	AATAAA	-19	NA	68988905	68989584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_68989057_68989210
ENSMUST00000075667.5	chr7	-	1502	2	FSM	ENSMUSG00000041775.8	ENSMUST00000075667.5	1502	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACAACCAGTCAACTTGT	NA	False	NA	28	True	NA	NA	NA	138447989	138437561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_138438760_138447685
ENSMUST00000075670.13	chr5	-	1027	8	FSM	ENSMUSG00000004642.14	ENSMUST00000075670.13	1027	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	406.856741572836	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTCCTATACTACTGT	NA	False	NA	NA	False	NA	NA	NA	33809689	33792295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_33792520_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
ENSMUST00000075671.5	chr7	-	3388	8	FSM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_7	21.1920277655614	1886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCTGGTTTCTGTCTTT	NA	False	NA	-6	True	AATAAA	-20	NA	125995909	125982025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_125984312_125986573_125986684_125986783_125986929_125989557_125989745_125989834_125989916_125990442_125990567_125995113_125995187_125995527
ENSMUST00000075693.12	chr4	+	1321	10	FSM	ENSMUSG00000057375.14	ENSMUST00000075693.12	1321	10	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_9	32.5261528202145	1575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGTGTCCTTCAGCTCT	NA	False	NA	28	True	AGTAAA	-18	NA	107171559	107217019	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205_107202389_107207610_107207736_107216803
ENSMUST00000075738.6	chr7	-	618	4	FSM	ENSMUSG00000036751.8	ENSMUST00000075738.6	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	5624	junction_1	329.368419183679	46737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTATTATTGTGTGTGTG	NA	False	NA	NA	False	AATGAA	-20	NA	30325576	30316285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30316588_30322839_30322941_30323924_30324039_30325475
ENSMUST00000075748.7	chr13	-	2762	21	FSM	ENSMUSG00000021758.15	ENSMUST00000075748.7	2762	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	14.0875831852025	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCCAACAGCATTTTTC	NA	False	NA	1	True	AATAAA	-24	NA	112788835	112734866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_112735566_112736151_112736269_112736385_112736657_112737945_112738046_112741020_112741167_112748508_112748676_112750230_112750361_112757149_112757305_112757741_112757895_112758698_112758842_112759191_112759240_112759332_112759381_112761314_112761357_112761878_112761960_112762855_112762958_112765371_112765432_112770418_112770470_112772501_112772580_112781042_112781101_112787865_112787953_112788809
ENSMUST00000075775.6	chr4	+	3993	5	FSM	ENSMUSG00000067919.9	ENSMUST00000075775.6	3993	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	279.904894562421	2167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	2283	False	NA	NA	False	AATAAA	-19	NA	147106306	147145251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_147106458_147107818_147107913_147136962_147137048_147140055_147140183_147141715
ENSMUST00000075829.3	chr10	-	666	6	FSM	ENSMUSG00000062981.6	ENSMUST00000075829.3	666	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_5	1622.28826045188	7923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337789	95316667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332750_95336244_95336385_95337751
ENSMUST00000075843.13	chr8	-	3000	20	FSM	ENSMUSG00000002885.15	ENSMUST00000075843.13	3000	20	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_16	54.4176930653952	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCACGTTTGCTGGTGAGA	NA	False	NA	-9	True	ATTAAA	-21	NA	84467798	84449990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84458531_84458667_84460042_84460196_84460637_84460755_84460924_84460982_84467735
ENSMUST00000075853.6	chr13	+	692	3	FSM	ENSMUSG00000062248.6	ENSMUST00000075853.6	692	3	0	0	0	0	multi-exon	FALSE	canonical	3	3514	junction_2	7.5	26940	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTGTTGAAATTAATTTG	NA	False	NA	NA	False	AATAAA	-24	NA	51799267	51804696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_51799508_51803620_51803749_51804372
ENSMUST00000075895.9	chr1	+	1917	8	FSM	ENSMUSG00000003464.14	ENSMUST00000075895.9	1917	8	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_6	20.1666526114529	782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGTTATTTTTCATC	NA	False	NA	24	True	AATAAA	-14	NA	171954321	171962850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
ENSMUST00000075896.7	chr8	+	2391	6	FSM	ENSMUSG00000056820.8	ENSMUST00000075896.7	2391	6	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_1	21.35790251874	1487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCCCTCTGGTTAAGCTT	5194	False	NA	9	True	AATAAA	-14	NA	125739735	125760931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506_125755635_125759235
ENSMUST00000075954.9	chr12	+	2209	15	FSM	ENSMUSG00000059669.9	ENSMUST00000075954.9	2209	15	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_4	28.2355254592363	922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTGGAAACTTGCAT	NA	False	NA	12	True	ATTAAA	-21	NA	24548357	24608538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
ENSMUST00000075962.9	chr13	+	483	1	FSM	ENSMUSG00000094446.2	ENSMUST00000075962.9	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1825	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGCTCCTGCCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	55233589	55234072	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_55233600_55234100
ENSMUST00000075968.14	chr1	+	622	4	FSM	ENSMUSG00000062169.14	ENSMUST00000075968.14	622	4	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	993.032504782978	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTGAGTTTTTGTAGA	NA	False	NA	3	True	CATAAA	-14	NA	180982302	180993946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180982470_180983423_180983537_180989639_180989781_180993745
ENSMUST00000075980.12	chr11	+	779	5	FSM	ENSMUSG00000020895.15	ENSMUST00000075980.12	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_4	23.6893963620857	2092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGGCGTATACTATTTTT	4647	False	NA	NA	False	AATAAA	-19	NA	68961631	68963856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248_68963346_68963571
ENSMUST00000076022.7	chr4	+	2682	24	FSM	ENSMUSG00000017264.17	ENSMUST00000076022.7	2682	24	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_18	124.035058157659	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	NA	False	NA	NA	False	ATTAAA	-22	NA	148642918	148666858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
ENSMUST00000076037.9	chr13	-	469	5	FSM	ENSMUSG00000061474.12	ENSMUST00000076037.9	469	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	598.6340179943	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGTGAGCAGAATGAAGT	NA	False	NA	NA	False	AATAAA	-3	NA	100881096	100872659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100872782_100875521_100875710_100877675_100877740_100880296_100880333_100881037
ENSMUST00000076070.9	chr15	-	877	8	FSM	ENSMUSG00000022635.10	ENSMUST00000076070.9	877	8	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_1	44.8289265214016	3810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGGAATAGTGACTGGT	NA	False	NA	-7	True	AATAAA	-21	NA	93296215	93283986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93293467_93293497_93295050_93295137_93296043
ENSMUST00000076084.6	chr2	-	787	4	FSM	ENSMUSG00000027317.9	ENSMUST00000076084.6	787	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	4.96655480858378	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGGAGTGTGGTGTGTAT	NA	False	NA	NA	False	GATAAA	-18	NA	119060387	119048599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_119048905_119049106_119049140_119049244_119049329_119060022
ENSMUST00000076095.14	chr5	-	2060	6	FSM	ENSMUSG00000025856.16	ENSMUST00000076095.14	2060	6	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_5	43.6055042397173	1454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGATGCATCCCGTGG	NA	False	NA	-19	True	ACTAAA	-32	NA	138980792	138961768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138980463
ENSMUST00000076110.11	chr1	-	3160	7	FSM	ENSMUSG00000026484.14	ENSMUST00000076110.11	3160	7	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_6	52.4404424085076	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTATTAGATGTGTACT	NA	False	NA	-6	True	CATAAA	-19	NA	151376706	151345156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_151347169_151347388_151347561_151348822_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151376469
ENSMUST00000076155.6	chr18	+	1791	2	FSM	ENSMUSG00000059040.6	ENSMUST00000076155.6	1791	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	23573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAACAGACATAGCTG	NA	False	NA	NA	False	NA	NA	NA	48178401	48181479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_48178513_48179799
ENSMUST00000076219.6	chr19	-	3471	18	FSM	ENSMUSG00000041360.9	ENSMUST00000076219.6	3471	18	0	0	0	0	multi-exon	TRUE	canonical	3	1256	junction_17	93.320929312512	2214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTATTTGTTTGTTTGTTTG	NA	False	NA	0	True	NA	NA	NA	27407225	27366097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
ENSMUST00000076264.8	chr5	+	3299	14	FSM	ENSMUSG00000062761.8	ENSMUST00000076264.8	3299	14	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	41.4283440690995	275	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGTCCTCCTTGCTG	7146	False	NA	16	True	AATAAA	-17	NA	31609778	31639098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31609922_31610498_31610558_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
ENSMUST00000076265.13	chrX	-	2344	10	FSM	ENSMUSG00000036572.17	ENSMUST00000076265.13	2344	10	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_3	69.0213779729436	1795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGTTTATTTATTCAAG	NA	False	NA	-1	True	AATAAA	-24	NA	36373975	36355330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_36356315_36359174_36359476_36360510_36360672_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
ENSMUST00000076354.13	chrX	+	1733	8	FSM	ENSMUSG00000058254.13	ENSMUST00000076354.13	1733	8	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_5	9.20736173961258	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTGTGGTTTTCTTCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	10351396	10462844	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_10351478_10445553_10445743_10448403_10448479_10450280_10450377_10451735_10451892_10456374_10456459_10461517_10461594_10461868
ENSMUST00000076362.12	chr1	+	3394	7	FSM	ENSMUSG00000026254.18	ENSMUST00000076362.12	3394	7	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_6	847.519796556727	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGAGTCTCCTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	87141635	87168210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87165567
ENSMUST00000076422.13	chr16	-	1558	6	FSM	ENSMUSG00000022847.16	ENSMUST00000076422.13	1558	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	5.38887743412299	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGCTTTCATACATTAA	NA	False	NA	2	True	TATAAA	-23	NA	20549348	20543907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_20544833_20545055_20545224_20547131_20547219_20547468_20547597_20547813_20547968_20549252
ENSMUST00000076431.13	chr2	+	3135	13	FSM	ENSMUSG00000026926.15	ENSMUST00000076431.13	3135	13	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_8	105.114619979018	1463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	644	False	NA	19	True	AATAAA	-16	NA	26279350	26287134	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
ENSMUST00000076451.7	chr19	-	685	6	FSM	ENSMUSG00000058216.14	ENSMUST00000076451.7	685	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	23.4469614236046	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGTGCAGGGCTTGTCC	9224	False	NA	NA	False	NA	NA	NA	4109295	4107477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734_4108842_4109258
ENSMUST00000076532.14	chr13	-	1504	8	FSM	ENSMUSG00000060147.16	ENSMUST00000076532.14	1504	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	178.591998815222	549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTCTGCCTCACTGG	NA	False	NA	2	True	AATAAA	-28	NA	34186777	34101900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34180225_34180335_34186652
ENSMUST00000076657.11	chr7	+	515	4	FSM	ENSMUSG00000035674.14	ENSMUST00000076657.11	515	4	0	0	0	0	multi-exon	FALSE	canonical	3	2080	junction_1	661.918591839074	19335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGGAATCTGTTTATTGGG	255	False	NA	NA	False	AATAAA	-23	NA	3620371	3623326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3620407_3620615_3620691_3622428_3622507_3622999
ENSMUST00000076664.7	chr17	+	2058	4	FSM	ENSMUSG00000057409.8	ENSMUST00000076664.7	2058	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	54.7073019704764	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATAAAAGTTTA	3733	False	NA	NA	False	CATAAA	-42	NA	21711517	21730026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_21711579_21720472_21720565_21725242_21725370_21728248
ENSMUST00000076694.13	chr10	-	1612	8	FSM	ENSMUSG00000061904.13	ENSMUST00000076694.13	1612	8	0	0	0	0	multi-exon	FALSE	canonical	1	1248	junction_7	1021.77973983373	32033	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAGTTTTATTTTTTTGA	NA	False	NA	0	True	ATTAAA	-18	NA	90959921	90952435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
ENSMUST00000076757.12	chr16	+	894	5	FSM	ENSMUSG00000003531.16	ENSMUST00000076757.12	894	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	180.635510074847	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGTCTGTGCTACCTA	NA	False	NA	9	True	AATAAA	-15	NA	17883022	17889206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_17883049_17884559_17884721_17887287_17887389_17887954_17888096_17888741
ENSMUST00000076803.12	chr2	-	3551	16	FSM	ENSMUSG00000027244.15	ENSMUST00000076803.12	3551	16	0	0	0	0	multi-exon	TRUE	canonical	3	217	junction_4	20.2170445141937	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCCTATTCCAAATGTCT	NA	False	NA	0	True	AATAAA	-20	NA	91540921	91504962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
ENSMUST00000076831.7	chr7	-	1025	3	FSM	ENSMUSG00000063838.7	ENSMUST00000076831.7	1025	3	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_2	5.5	1879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTCTATTCACTTTACGC	NA	False	NA	1	True	CATAAA	-22	NA	4167859	4154258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4154787_4167091_4167187_4167457
ENSMUST00000076842.7	chr18	-	879	1	FSM	ENSMUSG00000091957.4	ENSMUST00000076842.7	879	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	118027	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGTTTTTATATGAGAA	7434	False	NA	NA	False	NA	NA	NA	61393032	61392153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_61392200_61393000
ENSMUST00000076891.7	chr19	-	2263	11	FSM	ENSMUSG00000024982.11	ENSMUST00000076891.7	2263	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_10	157.939355450122	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTATAGTTTTCACCA	7441	False	NA	-26	True	AATAAA	-19	NA	55304462	55286751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304111
ENSMUST00000076961.9	chr7	-	899	5	FSM	ENSMUSG00000003380.12	ENSMUST00000076961.9	899	5	0	0	0	0	multi-exon	FALSE	canonical	3	706	junction_2	24.5051015096857	5032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTTTCCTGGTATTTTC	4495	False	NA	-5	True	AATAAA	-24	NA	24672179	24669176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_24669435_24669511_24669614_24671185_24671284_24671526_24671740_24671951
ENSMUST00000077078.12	chr11	-	2787	7	FSM	ENSMUSG00000020448.17	ENSMUST00000077078.12	2787	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	17.6391294821737	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGAGTGTGGAGCTTGTG	6815	False	NA	-5	True	ATTAAA	-14	NA	3402363	3365981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3382399_3382621_3402208
ENSMUST00000077088.11	chr6	-	2577	12	FSM	ENSMUSG00000030254.17	ENSMUST00000077088.11	2577	12	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	49.718048005937	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGCCTTTGTTTGGCAA	NA	False	NA	16	True	CATAAA	-40	NA	112673647	112596810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_112597866_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
ENSMUST00000077208.6	chr8	-	449	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	123457	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAACTTTTTATCGCT	NA	False	NA	NA	False	AATAAA	-37	NA	108166211	108165762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_108165800_108166200
ENSMUST00000077220.14	chr5	-	1617	10	FSM	ENSMUSG00000033434.16	ENSMUST00000077220.14	1617	10	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_7	48.631900316511	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110256063	110251840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255721
ENSMUST00000077243.5	chrX	-	1032	7	FSM	ENSMUSG00000031371.15	ENSMUST00000077243.5	1032	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	203.601462557506	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	False	NA	-12	True	AATAAA	-17	NA	72502650	72480920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72481172_72489415_72489531_72490533_72490744_72496604_72496667_72498472_72498541_72501579_72501696_72502440
ENSMUST00000077290.9	chr6	-	2399	10	FSM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	0	0	0	0	multi-exon	FALSE	canonical	3	1547	junction_7	244.688060423022	679	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTTTGCCTTTTATTTT	8890	False	NA	23	True	TTTAAA	-24	NA	47790364	47773074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
ENSMUST00000077338.12	chr7	+	1465	6	FSM	ENSMUSG00000057229.12	ENSMUST00000077338.12	1465	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	20.2938414303453	802	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGGCCTTTCCTCCCA	1739	False	NA	39	True	NA	NA	NA	25318838	25324976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_25318886_25320320_25320518_25321768_25321850_25323223_25323364_25323451_25323615_25324139
ENSMUST00000077340.14	chr1	-	2288	11	FSM	ENSMUSG00000041926.16	ENSMUST00000077340.14	2288	11	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_8	16.9602476397015	212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTGGAGTTATAGAATG	NA	False	NA	-14	True	AATAAA	-22	NA	135211822	135190449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_135190868_135191790_135191934_135192920_135193146_135194607_135194717_135194907_135195021_135195820_135195935_135199266_135199503_135200099_135200217_135205126_135205276_135206504_135206646_135211299
ENSMUST00000077353.15	chr9	-	1605	14	FSM	ENSMUSG00000032126.17	ENSMUST00000077353.15	1605	14	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_4	86.0870620274656	3552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCTTTCTGTTGTAAAAC	1408	False	NA	9	True	AATAAA	-33	NA	44255525	44247635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44255306
ENSMUST00000077367.11	chr3	+	1779	11	FSM	ENSMUSG00000028048.12	ENSMUST00000077367.11	1779	11	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_1	28.1177879642051	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCTCCTGTGCTATCTGTG	NA	False	NA	1	True	ATTAAA	-11	NA	89110234	89115986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89110394_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114759_89115130_89115295_89115618_89115736_89115823
ENSMUST00000077376.3	chr5	+	1677	3	FSM	ENSMUSG00000047635.7	ENSMUST00000077376.3	1677	3	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	7.5	323	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATCGAGGAAGCTGTGG	5398	False	NA	17	True	NA	NA	NA	124466160	124479907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124466293_124476689_124476999_124478671
ENSMUST00000077385.15	chr7	-	2546	3	FSM	ENSMUSG00000061374.15	ENSMUST00000077385.15	2546	3	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_2	130	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	2832	False	NA	-4	True	AATAAA	-14	NA	5017677	5010057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_5012205_5015676_5016022_5017623
ENSMUST00000077389.8	chr3	+	444	1	FSM	ENSMUSG00000057036.8	ENSMUST00000077389.8	444	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2588	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGCCACACCGGAGGTT	NA	False	NA	NA	False	NA	NA	NA	24387231	24387675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_24387200_24387700
ENSMUST00000077451.14	chr11	+	3297	21	FSM	ENSMUSG00000017686.18	ENSMUST00000077451.14	3297	21	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_19	176.261425161605	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGAGGTTTTTTGTCTTC	NA	False	NA	9	True	AATAAA	-20	NA	80099844	80157638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80146687_80146784_80148339_80148463_80156567
ENSMUST00000077477.12	chr17	-	1120	7	FSM	ENSMUSG00000061207.12	ENSMUST00000077477.12	1120	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	4.59770474137791	828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTCTGTGTCCTTTGT	5573	False	NA	-4	True	AATAAA	-16	NA	35055921	35042968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35043301_35043489_35043638_35043726_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
ENSMUST00000077494.13	chr17	-	1340	12	FSM	ENSMUSG00000024426.18	ENSMUST00000077494.13	1340	12	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_5	34.4359508470988	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTACCGACAAAAAGTGACT	NA	False	NA	-12	True	AATAAA	-24	NA	36220938	36208500	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUST00000077535.5	chr17	-	437	4	FSM	ENSMUSG00000024446.14	ENSMUST00000077535.5	437	4	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	333.755399456948	826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATCATCTTCCTCTGTA	NA	False	NA	6	True	AATAAA	-42	NA	36568748	36566536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568674
ENSMUST00000077577.8	chr15	-	1743	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	0	0	0	0	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	64868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTCTGGATACTTTGT	31	False	NA	NA	False	AGTAAA	-18	NA	98832446	98829305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
ENSMUST00000077605.12	chr16	+	2708	11	FSM	ENSMUSG00000022884.17	ENSMUST00000077605.12	2708	11	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_10	433.482883168413	1846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6054	False	NA	NA	False	AATAAA	-17	NA	22926508	22932696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
ENSMUST00000077609.12	chr7	+	1831	15	FSM	ENSMUSG00000030795.19	ENSMUST00000077609.12	1831	15	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_3	273.376618440941	5668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTCCCCCAGTTTAC	1183	False	NA	37	True	ATTAAA	-20	NA	127566661	127581204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571012_127571155_127571288_127571477_127571725_127571943_127573571_127573607_127575059_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
ENSMUST00000077626.13	chr2	-	1636	12	FSM	ENSMUSG00000038383.17	ENSMUST00000077626.13	1636	12	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_4	21.4987987363815	873	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGTTCTGATGACATGT	NA	False	NA	0	True	AATAAA	-23	NA	155199350	155120162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155120570_155134609_155134753_155139002_155139128_155140965_155141110_155143120_155143276_155156421_155156520_155170500_155170602_155173068_155173179_155177280_155177344_155178601_155178662_155187567_155187633_155199185
ENSMUST00000077680.10	chrX	+	3277	10	FSM	ENSMUSG00000000134.18	ENSMUST00000077680.10	3277	10	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	30.4046780026437	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTCCCGTTCTTGTT	NA	False	NA	25	True	AATAAA	-36	NA	7628896	7641441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ENSMUST00000077755.11	chr1	+	1914	4	FSM	ENSMUSG00000008475.14	ENSMUST00000077755.11	1914	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	649.932817040859	3186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGTAACTCTCCAGTTA	NA	False	NA	100	True	AATAAA	-35	NA	152642292	152651348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_152642619_152644611_152644685_152647114_152647292_152650010
ENSMUST00000077780.14	chr7	-	2480	7	FSM	ENSMUSG00000050605.18	ENSMUST00000077780.14	2480	7	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	4.81028989655394	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTGGATTCTTTGTGTG	NA	False	NA	7	True	TATAAA	-23	NA	23999100	23990463	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_23991930_23992769_23992860_23994379_23994507_23995403_23995450_23996997_23997164_23997698_23997801_23998617
ENSMUST00000077791.8	chr8	+	1811	4	FSM	ENSMUSG00000055835.11	ENSMUST00000077791.8	1811	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	17.3076733143296	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGTGTTTTTGGCTTTTT	NA	False	NA	13	True	AATAGA	-20	NA	112370137	112397643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_112370245_112385017_112385074_112392709_112392837_112396122
ENSMUST00000077798.13	chr2	-	2739	17	NIC	ENSMUSG00000027071.15	novel	1764	13	NA	NA	-9647	-5180	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1881	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGCTTTTCCCGCGTGCGC	9573	False	NA	NA	False	NA	NA	NA	84877453	84867577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr2_-_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
ENSMUST00000077839.13	chr10	-	1813	4	FSM	ENSMUSG00000075000.12	ENSMUST00000077839.13	1813	4	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	30.2691628926573	339	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGTTGAGTATGACTTG	NA	False	NA	NA	False	AATAAA	-21	NA	67121084	67102467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_67103946_67105884_67105926_67111348_67111434_67120875
ENSMUST00000077856.13	chr11	+	614	5	FSM	ENSMUSG00000063316.14	ENSMUST00000077856.13	614	5	0	0	0	0	multi-exon	FALSE	canonical	3	8302	junction_4	1985.8892844265	351269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	2241	False	NA	62	True	ATTAAA	-18	NA	101333123	101336355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101333283_101333548_101333632_101334326_101334497_101336045_101336157_101336264
ENSMUST00000077876.4	chrX	-	1002	5	FSM	ENSMUSG00000046032.17	ENSMUST00000077876.4	1002	5	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	142.088880634622	789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100266169	100255564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_100255953_100257379_100257471_100258006_100258132_100259088_100259185_100265867
ENSMUST00000077915.10	chr11	+	364	5	FSM	ENSMUSG00000057322.13	ENSMUST00000077915.10	364	5	0	0	0	0	multi-exon	FALSE	canonical	3	5140	junction_1	6068.87239835375	279457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559373	114563157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_114559453_114559606_114559641_114559731_114559793_114562559_114562683_114563090
ENSMUST00000077916.12	chr3	+	1114	7	FSM	ENSMUSG00000048416.16	ENSMUST00000077916.12	1114	7	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	4.04145188432738	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGTGGTTAAATTGGT	NA	False	NA	1	True	AATAAA	-14	NA	67281429	67307331	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_67281596_67291883_67292032_67300224_67300309_67301267_67301397_67302584_67302745_67305113_67305244_67307034
ENSMUST00000077938.10	chr17	-	1405	9	FSM	ENSMUSG00000061046.10	ENSMUST00000077938.10	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	8.07387763097757	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGCAGGTCTGTTTATT	4253	False	NA	-1	True	NA	NA	NA	26004647	26001762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977_26004169_26004401
ENSMUST00000077990.11	chr8	+	895	6	FSM	ENSMUSG00000001909.17	ENSMUST00000077990.11	895	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	233.344894951657	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGTTATGCAGTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	85415917	85418676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85415979_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85418500
ENSMUST00000078001.7	chr7	-	1059	6	FSM	ENSMUSG00000062773.7	ENSMUST00000078001.7	1059	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	1.72046505340853	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCGCGTGCATGCATG	1002	False	NA	NA	False	AATAAA	-21	NA	24371475	24367431	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_24367828_24367933_24368066_24369138_24369325_24369757_24369899_24370003_24370109_24371376
ENSMUST00000078021.13	chr5	-	2015	19	FSM	ENSMUSG00000029276.14	ENSMUST00000078021.13	2015	19	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_15	25.8010551033179	761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTGCATAATTCTTTT	NA	False	NA	NA	False	CATAAA	-27	NA	107745505	107696832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653_107744729_107745409
ENSMUST00000078074.9	chr2	+	2018	8	FSM	ENSMUSG00000064289.16	ENSMUST00000078074.9	2018	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	22.865177159397	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTCTGATGGGATTTA	NA	False	NA	NA	False	AATAAA	-30	NA	61408929	61484515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_61409038_61443994_61444143_61457246_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081_61480633_61483722
ENSMUST00000078079.11	chr18	+	2865	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	0	0	0	0	multi-exon	FALSE	canonical	3	1498	junction_1	106	6109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAATGTTTTTTTTTTCT	NA	False	NA	20	True	ATTAAA	-17	NA	46730770	46743278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_46730868_46731707_46731768_46740570
ENSMUST00000078124.8	chr12	-	2940	4	FSM	ENSMUSG00000062929.9	ENSMUST00000078124.8	2940	4	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	55.9603033904888	1786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTAAAGCTGTTGAGATG	NA	False	NA	-11	True	AATAAA	-12	NA	54909662	54905601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_54908023_54908121_54908199_54908310_54908619_54909528
ENSMUST00000078155.12	chr6	-	2437	14	FSM	ENSMUSG00000003500.14	ENSMUST00000078155.12	2437	14	0	0	0	0	multi-exon	TRUE	canonical	1	70	junction_10	46.9877234375763	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGATCCTGTTTCTGT	8	True	NA	-1	True	AATAAA	-19	NA	29212296	29200435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067
ENSMUST00000078214.8	chr6	-	1583	13	FSM	ENSMUSG00000059182.9	ENSMUST00000078214.8	1583	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	147.952390052416	2085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGACTTAGCCTGGTA	862	False	NA	-7	True	AATAAA	-18	NA	51989495	51836145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_51836551_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980715_51989314
ENSMUST00000078218.11	chr15	+	1371	12	FSM	ENSMUSG00000058586.13	ENSMUST00000078218.11	1371	12	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	9.92534113742268	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCAAGTGGCTGTTGTC	NA	False	NA	17	True	AATAAA	-18	NA	82984404	83000875	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_82984549_82985844_82985995_82986072_82986187_82986499_82986542_82986825_82986846_82987134_82987210_82988509_82988623_82989811_82989892_82996410_82996446_82998557_82998641_82999767_82999865_83000457
ENSMUST00000078222.9	chr2	+	1518	10	FSM	ENSMUSG00000000308.15	ENSMUST00000078222.9	1518	10	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_1	32.5602954456217	828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTGTGTTATTTCTAT	801	False	NA	32	True	AGTAAA	-20	NA	121188256	121194218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_121188341_121189276_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
ENSMUST00000078286.6	chr17	-	2606	7	FSM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	0	0	0	0	multi-exon	FALSE	canonical	3	1943	junction_1	138.303309994937	11731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGAGCCGTTCGCCCAG	NA	False	NA	NA	False	NA	NA	NA	47093582	47084832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
ENSMUST00000078323.13	chr5	+	2374	11	FSM	ENSMUSG00000013495.16	ENSMUST00000078323.13	2374	11	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	41.0677489034887	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTTTTGAACATTGAAAA	NA	False	NA	NA	False	AATAAA	-25	NA	108777867	108795129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_108777910_108786138_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704
ENSMUST00000078332.13	chr1	+	1894	9	FSM	ENSMUSG00000026150.15	ENSMUST00000078332.13	1894	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_6	190.780264637095	749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	False	NA	13	True	AATAAA	-13	NA	82702610	82730111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82719538_82719698_82724803_82724864_82728240_82728326_82729305
ENSMUST00000078432.5	chr7	+	772	4	FSM	ENSMUSG00000030432.13	ENSMUST00000078432.5	772	4	0	0	0	0	multi-exon	FALSE	canonical	3	6459	junction_1	109.515092820832	48282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGAGTCCACTGACTTC	2809	False	NA	-19	True	NA	NA	NA	4795988	4797525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_4796409_4796501_4796626_4797062_4797182_4797416
ENSMUST00000078509.12	chr17	-	2403	16	FSM	ENSMUSG00000024039.16	ENSMUST00000078509.12	2403	16	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_1	29.2615789047686	901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGTGTCGACCTTATT	1945	False	NA	-17	True	NA	NA	NA	31856139	31831614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
ENSMUST00000078528.7	chr11	-	1175	6	FSM	ENSMUSG00000018446.9	ENSMUST00000078528.7	1175	6	0	0	0	0	multi-exon	FALSE	canonical	3	4814	junction_4	225.05234946563	1191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTCTTTCGCCCACATCAG	NA	False	NA	-26	True	AATAAA	-32	NA	70873852	70868661	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70869071_70869253_70869377_70869514_70869611_70870835_70870930_70872995_70873147_70873550
ENSMUST00000078568.12	chr3	+	2248	13	FSM	ENSMUSG00000050150.17	ENSMUST00000078568.12	2248	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	40.4505013016595	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATGTCTCATGATTTAT	NA	False	NA	7	True	ATTAAA	-19	NA	135053794	135103588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097860_135098011_135099720_135099830_135100604_135100742_135103356
ENSMUST00000078572.9	chr9	-	1894	10	FSM	ENSMUSG00000032182.16	ENSMUST00000078572.9	1894	10	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_9	21.338541031039	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACGCCCATGGTGACCA	6124	False	NA	-16	True	AATAAA	-17	NA	21504068	21499977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504032
ENSMUST00000078573.5	chr13	-	571	4	FSM	ENSMUSG00000061474.12	ENSMUST00000078573.5	571	4	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	492.52884856287	3537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCACAAGCTGCCCTGTAC	NA	False	NA	NA	False	NA	NA	NA	100881165	100872584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100872782_100875521_100875704_100877675_100877740_100881037
ENSMUST00000078589.7	chr8	-	523	3	FSM	ENSMUSG00000014633.16	ENSMUST00000078589.7	523	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	157.5	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCACTGGACAGCGTGGGC	NA	False	NA	-20	True	NA	NA	NA	117648178	117616271	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_117616599_117637866_117637974_117648089
ENSMUST00000078665.13	chr8	+	1333	9	FSM	ENSMUSG00000060038.15	ENSMUST00000078665.13	1333	9	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_2	36.5391485259304	2006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCATCCTTGGTGTCAG	NA	False	NA	23	True	AATAAA	-29	NA	85798385	85801791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85798683_85799080_85799246_85799923_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
ENSMUST00000078676.6	chr4	-	547	4	FSM	ENSMUSG00000063882.13	ENSMUST00000078676.6	547	4	0	0	0	0	multi-exon	FALSE	canonical	3	1017	junction_2	25.9272486435067	31253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7657	False	NA	-7	True	AATAAA	-17	NA	115932268	115924161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_115924370_115927059_115927222_115927933_115927955_115932112
ENSMUST00000078739.7	chr18	+	1355	1	FSM	ENSMUSG00000058625.7	ENSMUST00000078739.7	1355	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	174	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCATTCCTTGAGCCCCTG	NA	False	NA	NA	False	NA	NA	NA	82356586	82357941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_82356600_82357900
ENSMUST00000078764.9	chr13	-	433	3	FSM	ENSMUSG00000017778.15	ENSMUST00000078764.9	433	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	5251.5	6325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGCCTCGTCTCTGCA	NA	False	NA	-14	True	AATAAA	-16	NA	86194579	86192934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_86193028_86193845_86193989_86194382
ENSMUST00000078775.13	chrX	-	1162	9	FSM	ENSMUSG00000079845.9	ENSMUST00000078775.13	1162	9	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_8	89.7743699504486	1106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126084	72117950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125590_72125674_72125988
ENSMUST00000078803.5	chr15	-	911	10	FSM	ENSMUSG00000115987.2	ENSMUST00000078803.5	911	10	0	0	0	0	multi-exon	FALSE	canonical	3	892	junction_9	85.8889607589177	4581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9603	False	NA	-25	True	AATAAA	-17	NA	76510274	76506308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188
ENSMUST00000078804.12	chr16	+	491	5	FSM	ENSMUSG00000060636.15	ENSMUST00000078804.12	491	5	0	0	0	0	multi-exon	FALSE	canonical	3	3858	junction_1	2402.68870226669	296817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTTTCTCTTTGTTAAG	NA	False	NA	34	True	AATAAA	-45	NA	32876822	32880559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32876881_32877505_32877549_32877759_32877913_32879048_32879194_32880467
ENSMUST00000078845.13	chr7	+	637	7	FSM	ENSMUSG00000060791.16	ENSMUST00000078845.13	637	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	149.1011029097	1498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAACGACATGGTATCT	146	False	NA	NA	False	AATAAA	-19	NA	28140351	28145964	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28140467_28140858_28140956_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
ENSMUST00000078918.10	chr7	-	1053	6	FSM	ENSMUSG00000062797.15	ENSMUST00000078918.10	1053	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	509.123403508422	1454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATTTGAAATACCATTACA	NA	False	NA	-1	True	AATAAA	-18	NA	89590274	89567910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89579527_89579669_89584934_89585173_89590176
ENSMUST00000078975.8	chr11	+	1573	6	FSM	ENSMUSG00000034793.16	ENSMUST00000078975.8	1573	6	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_4	4.31740662898458	948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTCTTGTCTGTGCTC	NA	False	NA	5	True	AATAAA	-19	NA	102080494	102084907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_102080970_102082860_102082968_102083298_102083390_102083574_102083694_102083910_102084053_102084268
ENSMUST00000079028.6	chr15	+	3275	16	FSM	ENSMUSG00000022325.15	ENSMUST00000079028.6	3275	16	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	10.1552394796425	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCATGTGGATGATGATTT	94	False	NA	-2	True	ATTAAA	-8	NA	34495468	34530783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_34495562_34499434_34499579_34502456_34502625_34505104_34505281_34506564_34506814_34508265_34508354_34508749_34508938_34509908_34510166_34510477_34510572_34512059_34512172_34512877_34512998_34515987_34516104_34517972_34518165_34526308_34526464_34529028_34529377_34530008
ENSMUST00000079033.6	chr19	-	885	5	FSM	ENSMUSG00000057506.6	ENSMUST00000079033.6	885	5	0	0	0	0	multi-exon	FALSE	canonical	3	1199	junction_4	51.0165414351071	6870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAACAAATGTGGGT	963	False	NA	NA	False	ATTAAA	-5	NA	44134885	44127697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_44128153_44130562_44130668_44131459_44131580_44134379_44134497_44134797
ENSMUST00000079056.9	chr11	+	1443	16	FSM	ENSMUSG00000060216.16	ENSMUST00000079056.9	1443	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_15	82.1467521505804	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTTGGCTTGGTCTGTGC	NA	False	NA	42	True	NA	NA	NA	70323470	70331654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330643_70330732_70330989_70331102_70331581
ENSMUST00000079085.11	chr3	-	480	5	FSM	ENSMUSG00000062006.13	ENSMUST00000079085.11	480	5	0	0	0	0	multi-exon	FALSE	canonical	3	6284	junction_4	1283.0290331867	312552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTACGCTTCCGTTATCT	NA	False	NA	-19	True	AATAAA	-12	NA	130524047	130520487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523966
ENSMUST00000079121.4	chr17	-	1219	4	FSM	ENSMUSG00000057388.10	ENSMUST00000079121.4	1219	4	0	0	0	0	multi-exon	FALSE	canonical	3	996	junction_2	30.9120616516523	5875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCCTTACTGTGTTGTG	NA	False	NA	-9	True	ATTAAA	-18	NA	13135232	13130235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_13130637_13132656_13132889_13134524_13134712_13134833
ENSMUST00000079213.6	chr4	-	1516	10	FSM	ENSMUSG00000063800.6	ENSMUST00000079213.6	1516	10	0	0	0	0	multi-exon	TRUE	canonical	3	462	junction_7	44.4233283170614	1166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGGCTTTTTGTTTCTT	NA	False	NA	-8	True	ATTAAA	-20	NA	108436533	108422066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_108422465_108424101_108424151_108424619_108424718_108424810_108424838_108425554_108425668_108427352_108427464_108430002_108430089_108432565_108432688_108434125_108434286_108436181
ENSMUST00000079223.11	chr4	+	1891	16	FSM	ENSMUSG00000028573.19	ENSMUST00000079223.11	1891	16	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	4.66476151587624	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGTCACTTATGTCTGT	NA	False	NA	10	True	AATAAA	-23	NA	95445743	95815176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_95445829_95473468_95473685_95485859_95485972_95489201_95489354_95511717_95511807_95585196_95585313_95627025_95627155_95657662_95657767_95688793_95688902_95700344_95700407_95710214_95710363_95725821_95725897_95732309_95732431_95737818_95737914_95811161_95811224_95814959
ENSMUST00000079278.5	chr2	-	1455	3	FSM	ENSMUSG00000059361.7	ENSMUST00000079278.5	1455	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCGTGGCTTCCTTTTGA	8689	False	NA	-2	True	AATAAA	-17	NA	152218558	152210674	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_152211844_152216015_152216211_152218467
ENSMUST00000079327.12	chr19	+	2639	10	FSM	ENSMUSG00000024947.18	ENSMUST00000079327.12	2639	10	0	0	0	0	multi-exon	TRUE	canonical	3	89	junction_1	99.9901229690114	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGATGTATGTATGTGTT	588	False	NA	21	True	GATAAA	-21	NA	6385042	6390919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6385113_6385474_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
ENSMUST00000079414.12	chr7	+	2610	19	FSM	ENSMUSG00000023072.15	ENSMUST00000079414.12	2610	19	0	0	0	0	multi-exon	FALSE	canonical	2	65	junction_12	24.7032386540712	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGCATGTTTATTTCAG	NA	False	NA	10	True	AATAAA	-20	NA	35096479	35138114	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122829_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35131942_35132033_35134898_35135069_35137752
ENSMUST00000079419.12	chr14	+	883	4	FSM	ENSMUSG00000012405.17	ENSMUST00000079419.12	883	4	0	0	0	0	multi-exon	FALSE	canonical	3	1636	junction_1	5972.09066315046	223713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198666	4200736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_4198874_4199235_4199418_4199652_4199790_4200379
ENSMUST00000079421.15	chr17	+	2581	8	FSM	ENSMUSG00000002307.17	ENSMUST00000079421.15	2581	8	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_5	66.597787546753	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5569	False	NA	12	True	AATAAA	-23	NA	34128418	34134564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
ENSMUST00000079510.6	chr8	-	3713	18	FSM	ENSMUSG00000052488.8	ENSMUST00000079510.6	3713	18	0	0	0	0	multi-exon	TRUE	canonical	3	101	junction_13	118.126552277382	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATTTCCTCTAGCTGT	NA	False	NA	-12	True	AATAAA	-10	NA	73228963	73214332	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222364_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
ENSMUST00000079542.13	chrX	+	3163	9	FSM	ENSMUSG00000000134.18	ENSMUST00000079542.13	3163	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	94.1407689314252	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	22	True	AATAAA	-33	NA	7628902	7641438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ENSMUST00000079634.8	chr7	+	1020	6	FSM	ENSMUSG00000061286.8	ENSMUST00000079634.8	1020	6	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_2	58.9528625259198	9777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGTGTCTGGAGAGTAC	NA	False	NA	31	True	ATTAAA	-43	NA	25358588	25367457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_25358809_25362561_25362676_25363751_25363874_25364845_25364987_25365677_25365768_25367124
ENSMUST00000079642.8	chr17	-	2018	4	FSM	ENSMUSG00000057835.8	ENSMUST00000079642.8	2018	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	5.43650214343336	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCATTCTCTTGGATAGC	NA	False	NA	NA	False	AATAAA	-16	NA	56185930	56171891	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_56173651_56175302_56175364_56175558_56175686_56185859
ENSMUST00000079644.13	chr4	-	1628	8	FSM	ENSMUSG00000028639.15	ENSMUST00000079644.13	1628	8	0	0	0	0	multi-exon	FALSE	canonical	3	9851	junction_2	327.608589257214	18823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	AATAAA	-16	NA	119151801	119135177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151400
ENSMUST00000079648.12	chr10	-	716	3	FSM	ENSMUSG00000063320.12	ENSMUST00000079648.12	716	3	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	73.5	6159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTACTATACATTCTTGG	NA	False	NA	0	True	NA	NA	NA	82459030	82455684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_82456052_82458541_82458659_82458798
ENSMUST00000079691.13	chr2	-	1963	13	FSM	ENSMUSG00000027610.18	ENSMUST00000079691.13	1963	13	0	0	0	0	multi-exon	FALSE	canonical	3	779	junction_12	109.121491925285	2887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTCATTGTTTCATGTAC	8350	False	NA	-2	True	AATAAA	-19	NA	155434730	155405100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155434613
ENSMUST00000079703.11	chr15	+	1054	7	FSM	ENSMUSG00000059586.11	ENSMUST00000079703.11	1054	7	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_4	74.7677886674618	5221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCATGGTCCTGTCTG	NA	False	NA	16	True	AATAAA	-17	NA	59246135	59473533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59463545_59463647_59463986_59464094_59473188
ENSMUST00000079716.6	chr18	+	775	7	FSM	ENSMUSG00000062328.9	ENSMUST00000079716.6	775	7	0	0	0	0	multi-exon	FALSE	canonical	3	6761	junction_1	2088.63605148325	383695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGACTGTCTAGTAGC	NA	False	NA	21	True	ATTAAA	-37	NA	75133547	75136452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_75133615_75134261_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
ENSMUST00000079720.6	chr2	+	641	4	FSM	ENSMUSG00000064263.7	ENSMUST00000079720.6	641	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	6.53197264742181	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAAGACTCGGTTGCT	NA	False	NA	5	True	ATTAAA	-18	NA	71549760	71561310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_71549853_71553633_71553841_71560693_71560778_71561052
ENSMUST00000079735.12	chr15	-	886	5	FSM	ENSMUSG00000058600.14	ENSMUST00000079735.12	886	5	0	0	0	0	multi-exon	FALSE	canonical	3	3551	junction_4	804.634194836387	104446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	NA	False	NA	-20	True	AATAAA	-27	NA	34443786	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443330
ENSMUST00000079764.14	chr8	+	922	4	FSM	ENSMUSG00000059355.14	ENSMUST00000079764.14	922	4	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_1	13.7679176187089	6032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGCTTCTCTTTTGTTC	NA	False	NA	36	True	TATAAA	-25	NA	85807368	85808968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85807693_85807801_85807908_85808405_85808504_85808574
ENSMUST00000079857.9	chr2	+	3004	15	FSM	ENSMUSG00000027330.17	ENSMUST00000079857.9	3004	15	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_6	17.0899481137484	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCTGTTTGTTATGCAGA	NA	False	NA	NA	False	AATAAA	-18	NA	131028877	131040417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_131029301_131030025_131030148_131030998_131031051_131033064_131033107_131033269_131033307_131033515_131033687_131034476_131034609_131034987_131035069_131035158_131035333_131035514_131035608_131036034_131036098_131036258_131036358_131036545_131036680_131038896_131039009_131039148
ENSMUST00000079883.12	chr10	+	1804	7	FSM	ENSMUSG00000113949.2	ENSMUST00000079883.12	1804	7	0	0	0	0	multi-exon	FALSE	canonical	3	584	junction_5	41.6239781322684	1125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGGCCTTTATCTGTGG	NA	False	NA	13	True	AATAAA	-13	NA	80438713	80451617	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80438784_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
ENSMUST00000079949.13	chr11	-	2588	17	FSM	ENSMUSG00000009079.17	ENSMUST00000079949.13	2588	17	0	0	0	0	multi-exon	FALSE	canonical	3	2776	junction_9	796.06296616144	8297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTCCTCCTCTGTTCTC	NA	False	NA	-13	True	AATAAA	-23	NA	5049266	5019688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ENSMUST00000079961.14	chr8	+	2707	22	FSM	ENSMUSG00000032939.15	ENSMUST00000079961.14	2707	22	0	0	0	0	multi-exon	FALSE	canonical	3	950	junction_1	70.7360075664432	814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTTTTCCTTTTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	94941191	95041488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_94941260_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
ENSMUST00000079970.6	chr7	-	1593	8	FSM	ENSMUSG00000063802.6	ENSMUST00000079970.6	1593	8	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_7	148.934720667842	2915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTATGCTGTCTTGCATT	NA	False	NA	-7	True	AATAAA	-16	NA	4688067	4663519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687569_4687892
ENSMUST00000079987.13	chrX	-	2530	13	FSM	ENSMUSG00000057421.13	ENSMUST00000079987.13	2530	13	0	0	0	0	multi-exon	FALSE	canonical	3	815	junction_5	66.9966831683148	1252	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTCATGGTGTTTGT	NA	False	NA	-36	True	AATAAA	-4	NA	95000519	94978940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
ENSMUST00000080001.9	chr1	-	1007	7	FSM	ENSMUSG00000062963.11	ENSMUST00000080001.9	1007	7	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_6	130.826539101718	4807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGGTTCTCATTGATG	7283	False	NA	0	True	AATAAA	-18	NA	171122597	171116135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117456_171117521_171117721_171117790_171122206_171122401_171122493
ENSMUST00000080008.13	chr2	+	3068	16	FSM	ENSMUSG00000027255.15	ENSMUST00000080008.13	3068	16	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_10	19.1619994317457	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCCTCTCCGTCCTGCCT	5502	False	NA	NA	False	AATAAA	-25	NA	91095318	91107276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097602_91097680_91097762_91098501_91098584_91098796_91098854_91099796_91099850_91100277_91100415_91100502_91100635_91103885_91104015_91104097_91104233_91105139_91105267_91105417_91105512_91105620_91105740_91106109
ENSMUST00000080058.11	chr7	-	2107	6	FSM	ENSMUSG00000058709.12	ENSMUST00000080058.11	2107	6	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_5	57.8840219749803	789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTTGTATTCCTCTCTG	NA	False	NA	-3	True	AATAAA	-20	NA	26866227	26858082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26866108
ENSMUST00000080085.9	chr5	+	2930	17	FSM	ENSMUSG00000000600.16	ENSMUST00000080085.9	2930	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	61.5435567301728	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTATTTAAACCATTTC	7985	False	NA	10	True	AATAAA	-23	NA	3853183	3891359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_3853484_3856464_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
ENSMUST00000080089.11	chr18	+	2799	21	FSM	ENSMUSG00000024231.16	ENSMUST00000080089.11	2799	21	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	205.086591468092	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAAAAAAAAAAAAAAT	-19	True	NA	72	True	ATTAAA	-28	NA	3383224	3435385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_3383398_3399845_3399987_3405684_3405788_3414173_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
ENSMUST00000080211.12	chr7	+	1312	6	FSM	ENSMUSG00000067616.12	ENSMUST00000080211.12	1312	6	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_4	3.00665927567458	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCTGTTGAGTGTCAAC	NA	False	NA	NA	False	NA	NA	NA	43424027	43428687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_43424226_43425903_43425979_43426304_43426462_43426911_43427178_43427753_43427891_43428208
ENSMUST00000080249.6	chr17	-	2872	5	FSM	ENSMUSG00000063383.6	ENSMUST00000080249.6	2872	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	1.11803398874989	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTTGGCTGTTTCCATT	NA	False	NA	NA	False	NA	NA	NA	22385171	22363339	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_22365516_22366369_22366497_22369015_22369064_22382167_22382317_22384799
ENSMUST00000080281.14	chr14	+	1922	4	FSM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	0	0	0	0	multi-exon	FALSE	canonical	3	8735	junction_1	3197.35060462391	298112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGTTATCTTTTATGTT	NA	False	NA	NA	False	AATAAA	-18	NA	4198628	4201873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379
ENSMUST00000080316.8	chr16	+	720	4	FSM	ENSMUSG00000014075.16	ENSMUST00000080316.8	720	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	127.027556065603	860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATGTCATGAATAGTTTT	NA	False	NA	5	True	AATAAA	-17	NA	32238563	32247913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32238746_32241637_32241772_32245675_32245740_32247573
ENSMUST00000080356.10	chr7	-	1365	7	FSM	ENSMUSG00000061479.16	ENSMUST00000080356.10	1365	7	0	0	0	0	multi-exon	FALSE	canonical	3	1453	junction_6	315.533102683203	10566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	-8	True	ATTAAA	-26	NA	26895696	26886431	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895415
ENSMUST00000080411.13	chrX	-	1859	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	0	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	1926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTGTGGTG	NA	False	NA	NA	False	AATAAA	-23	NA	135642101	135633701	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
ENSMUST00000080492.7	chr17	+	383	4	FSM	ENSMUSG00000057863.7	ENSMUST00000080492.7	383	4	0	0	0	0	multi-exon	FALSE	canonical	3	5436	junction_1	2487.77200634535	145288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTTGTGTATGTGTGA	NA	False	NA	-1	True	AATAAA	-12	NA	56920415	56921243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_56920449_56920585_56920681_56920906_56921042_56921123
ENSMUST00000080517.14	chr4	+	2116	6	FSM	ENSMUSG00000059482.16	ENSMUST00000080517.14	2116	6	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_4	10.0079968025574	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATGTCTCTGTGCAA	NA	False	NA	11	True	AATAAA	-15	NA	10874497	10899421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_10874773_10879522_10879611_10881800_10881869_10882406_10882473_10893262_10893359_10897898
ENSMUST00000080536.8	chr8	-	3793	18	FSM	ENSMUSG00000058355.9	ENSMUST00000080536.8	3793	18	0	0	0	0	multi-exon	FALSE	canonical	3	1167	junction_10	93.0334984503433	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTTTTTTGACTTCTTT	NA	False	NA	NA	False	AATACA	-13	NA	80438369	80410090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
ENSMUST00000080557.12	chr6	-	3073	15	FSM	ENSMUSG00000005069.13	ENSMUST00000080557.12	3073	15	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_8	13.6099078555564	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTTCCGCTGCTGACGTT	NA	False	NA	-1	True	AATAAA	-44	NA	124392026	124373775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381588_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391931
ENSMUST00000080713.5	chrX	+	2507	15	FSM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_8	49.1840047833705	922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGACTACCTTCTGTATTA	NA	False	NA	20	True	AATAAA	-24	NA	47345738	47371330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677_47364066_47366098_47366497_47367243_47367438_47367544_47367645_47370938
ENSMUST00000080723.11	chr6	+	3285	18	FSM	ENSMUSG00000004535.13	ENSMUST00000080723.11	3285	18	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_12	67.9651854701079	2070	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCTTTGTAAATGATTCG	NA	False	NA	NA	False	AATAAA	-27	NA	52690713	52743765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52719676_52719824_52721206_52721340_52723654_52723756_52728069_52728196_52730289_52730362_52734538_52734714_52735197_52735341_52742005_52742089_52742857
ENSMUST00000080732.10	chr5	+	2134	4	FSM	ENSMUSG00000037017.16	ENSMUST00000080732.10	2134	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	59.1626759217517	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGCGTCTCAGGACTGTT	NA	False	NA	4	True	AATAAA	-13	NA	138115198	138132476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_138115251_138123239_138123953_138124715_138124909_138131300
ENSMUST00000080812.14	chr6	-	1824	10	FSM	ENSMUSG00000039130.19	ENSMUST00000080812.14	1824	10	0	0	0	0	multi-exon	FALSE	canonical	1	382	junction_8	221.210865270177	1338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGCTAGAGAATTGTTTT	-9	True	NA	-7	True	AATAAA	-18	NA	30391022	30366378	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_30366745_30370263_30370471_30372736_30372950_30373241_30373483_30374763_30374919_30375937_30376066_30381779_30381864_30382535_30382687_30387419_30387532_30390855
ENSMUST00000080813.5	chr7	-	494	5	FSM	ENSMUSG00000061787.16	ENSMUST00000080813.5	494	5	0	0	0	0	multi-exon	FALSE	canonical	3	8882	junction_4	1855.19963548401	241985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80995002	80992480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994604_80994757_80994949
ENSMUST00000080834.15	chr7	-	2181	7	FSM	ENSMUSG00000098022.8	ENSMUST00000080834.15	2181	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	14.682756326158	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGTTCCACTGTGTCC	NA	False	NA	NA	False	ATTAAA	-15	NA	29772325	29755461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29771453_29771565_29772205
ENSMUST00000080839.2	chrX	-	1584	9	FSM	ENSMUSG00000058147.2	ENSMUST00000080839.2	1584	9	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_5	383.166718772651	7712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	-8	True	AATAAA	-16	NA	72308996	72298145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
ENSMUST00000080853.11	chr11	-	3283	15	FSM	ENSMUSG00000020717.20	ENSMUST00000080853.11	3283	15	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_1	284.128393297029	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	9559	False	NA	-10	True	AATAAA	-18	NA	106606085	106545043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844
ENSMUST00000080893.7	chr11	-	1551	8	FSM	ENSMUSG00000035557.10	ENSMUST00000080893.7	1551	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	2.1946130708196	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGGACTGGTGTGTGTG	NA	False	NA	48	True	AATAAA	-16	NA	100151855	100147042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100147323_100148145_100148172_100148258_100148480_100148568_100148695_100149234_100149397_100149998_100150156_100150520_100150604_100151359
ENSMUST00000080926.13	chr4	+	2027	12	FSM	ENSMUSG00000063524.14	ENSMUST00000080926.13	2027	12	0	0	0	0	multi-exon	FALSE	canonical	3	2891	junction_9	3966.2265098293	46604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGGCATCTCATTTGTG	NA	False	NA	5	True	AATAAA	-22	NA	150321408	150333336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
ENSMUST00000080975.6	chr10	-	2458	14	FSM	ENSMUSG00000040462.14	ENSMUST00000080975.6	2458	14	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_9	22.2351605990131	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCAGGCTCTGTGGGGA	NA	False	NA	-2	True	AATAAA	-16	NA	126956994	126931518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_126932242_126932498_126932612_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
ENSMUST00000080982.5	chr19	+	378	1	FSM	ENSMUSG00000058607.5	ENSMUST00000080982.5	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	261	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGATCATGTCAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	30138019	30138397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_30138000_30138400
ENSMUST00000081026.11	chr1	-	888	4	FSM	ENSMUSG00000060743.13	ENSMUST00000081026.11	888	4	0	0	0	0	multi-exon	FALSE	canonical	1	55	junction_1	1176.16816635869	13684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACACAGTAGATTCCATC	NA	False	NA	NA	False	AGTAAA	-42	NA	180641112	180630261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_180630768_180637681_180637836_180639363_180639515_180641035
ENSMUST00000081064.12	chrX	+	3227	23	FSM	ENSMUSG00000031262.13	ENSMUST00000081064.12	3227	23	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_9	42.2862392872416	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATTTCCGAATTTTTTTT	NA	False	NA	6	True	AATAAA	-17	NA	133208832	133263388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_133208978_133209314_133209383_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
ENSMUST00000081103.12	chr1	-	1462	7	FSM	ENSMUSG00000026656.16	ENSMUST00000081103.12	1462	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_6	22.7943706500823	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTTCTATTTACTTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	170803696	170788126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_170788670_170788764_170788803_170793270_170793394_170794014_170794270_170795548_170795804_170797042_170797064_170803469
ENSMUST00000081111.14	chr9	+	1858	14	FSM	ENSMUSG00000062867.14	ENSMUST00000081111.14	1858	14	0	0	0	0	multi-exon	TRUE	canonical	3	1280	junction_13	396.993628196225	1830	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGAGTTCAATGGGCAC	995	False	NA	36	True	AATAAA	-29	NA	108437484	108442783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
ENSMUST00000081180.7	chr1	+	625	4	FSM	ENSMUSG00000061518.12	ENSMUST00000081180.7	625	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	3394.14034280651	72189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730529	36732467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_36730771_36731291_36731366_36731511_36731632_36732277
ENSMUST00000081202.6	chr2	+	1107	3	FSM	ENSMUSG00000063019.6	ENSMUST00000081202.6	1107	3	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	136	4025	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGTGTTGCTACTG	5217	False	NA	30	True	AATAAA	-17	NA	157209513	157238683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_157209561_157220968_157221175_157237829
ENSMUST00000081219.14	chr6	+	984	6	FSM	ENSMUSG00000029913.15	ENSMUST00000081219.14	984	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	81.8549937389284	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTACGGCTCTTGACTTT	NA	False	NA	NA	False	ATTAAA	-11	NA	65756005	65913357	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_65756178_65808232_65808356_65863068_65863163_65878757_65878844_65904900_65905006_65912953
ENSMUST00000081314.11	chr7	-	4598	22	FSM	ENSMUSG00000030528.13	ENSMUST00000081314.11	4598	22	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_6	41.4509518092853	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGGGAAGGCAGCATGGG	NA	False	NA	66	True	NA	NA	NA	80184867	80104740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_80105185_80108560_80108745_80110477_80110601_80113520_80113714_80114485_80114686_80116522_80116662_80119337_80119529_80123776_80123973_80130082_80130244_80131151_80131259_80143849_80143999_80144180_80144280_80145737_80145852_80147152_80147272_80149500_80149693_80152030_80152702_80152987_80153121_80155566_80155695_80159151_80159312_80162526_80163243_80164336_80164439_80184790
ENSMUST00000081333.11	chr19	-	1114	5	FSM	ENSMUSG00000059363.11	ENSMUST00000081333.11	1114	5	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_4	29.2018835008977	1416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAATGTCTTACACTGTG	NA	False	NA	NA	False	AAGAAA	-45	NA	24257969	24238816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_24239418_24244665_24244764_24249710_24249832_24254544_24254640_24257770
ENSMUST00000081335.13	chr2	+	2900	3	FSM	ENSMUSG00000062175.14	ENSMUST00000081335.13	2900	3	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_2	7.5	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156681926	156697490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_156682159_156686075_156686302_156695048
ENSMUST00000081381.6	chr8	-	4195	23	FSM	ENSMUSG00000031835.17	ENSMUST00000081381.6	4195	23	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_22	51.0282088571954	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGCTGGCATGTGTCGT	8141	False	NA	-7	True	AATAAA	-14	NA	120285474	120234894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285384
ENSMUST00000081387.11	chr11	+	947	4	FSM	ENSMUSG00000017716.16	ENSMUST00000081387.11	947	4	0	0	0	0	multi-exon	FALSE	canonical	3	1683	junction_1	206.515536138729	19415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTAAGCTCTGTCTGTCT	NA	False	NA	29	True	AATAAA	-18	NA	117740076	117746558	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_117740288_117740579_117740690_117743488_117743607_117746050
ENSMUST00000081506.11	chr8	-	1791	4	FSM	ENSMUSG00000063253.12	ENSMUST00000081506.11	1791	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	137.734849943247	1528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTGTGTGTGTGTGTTT	7694	False	NA	-2	True	AATAAA	-16	NA	84184978	84161123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84162670_84164181_84164266_84164613_84164686_84184889
ENSMUST00000081551.14	chr1	+	2547	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	0	0	0	0	multi-exon	FALSE	canonical	3	1526	junction_2	186.842443693696	4208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACATGTTTTTTGTCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	4928036	4968128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
ENSMUST00000081554.13	chr5	+	1887	11	FSM	ENSMUSG00000029470.16	ENSMUST00000081554.13	1887	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	30.411182153938	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCCTTGTCTGTGCTGCCT	NA	False	NA	15	True	ATTAAA	-20	NA	122845646	122867107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
ENSMUST00000081567.11	chr5	+	4060	15	FSM	ENSMUSG00000029267.18	ENSMUST00000081567.11	4060	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	595.009556603068	1360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108213607	108256870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_108213832_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUST00000081591.7	chr2	+	2111	10	FSM	ENSMUSG00000027091.15	ENSMUST00000081591.7	2111	10	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_6	95.2257875645245	5882	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGGCCTTTTTCTTTTA	NA	False	NA	28	True	AATAAA	-36	NA	83474778	83494966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352_83488506_83488873_83488966_83490401_83490585_83491490_83491638_83491776_83491879_83492492_83492617_83494163
ENSMUST00000081593.13	chrX	+	1825	11	FSM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	0	0	0	0	multi-exon	FALSE	canonical	3	3907	junction_10	353.61602056468	28469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCCTGTCATACTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	105230705	105247305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
ENSMUST00000081631.10	chr2	-	1894	6	FSM	ENSMUSG00000057234.10	ENSMUST00000081631.10	1894	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	7.25534285888682	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATTTATTTATTTTAT	NA	False	NA	NA	False	AATAAA	-20	NA	109108635	108922641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_108923643_108961829_108962009_108967685_108967878_109021896_109022034_109104733_109105021_109108537
ENSMUST00000081649.10	chr7	-	655	2	FSM	ENSMUSG00000060591.10	ENSMUST00000081649.10	655	2	0	0	0	0	multi-exon	FALSE	canonical	3	9574	junction_1	0	58368	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTCACTGTTCTCT	NA	False	NA	-12	True	AATAAA	-22	NA	140535900	140534749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140535087_140535582
ENSMUST00000081650.15	chr15	-	1351	10	FSM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	0	0	0	0	multi-exon	FALSE	canonical	3	16287	junction_9	4874.04926341766	381152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCCCACATTTCTTT	3518	False	NA	-1	True	AATAAA	-17	NA	79967607	79961991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
ENSMUST00000081677.12	chr1	-	896	7	FSM	ENSMUSG00000026035.16	ENSMUST00000081677.12	896	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	63.3151289626386	1028	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGAGTGTCCTTTTTT	NA	False	NA	-2	True	AATAGA	-25	NA	58484645	58470155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484490
ENSMUST00000081702.12	chr15	+	2439	10	FSM	ENSMUSG00000015363.14	ENSMUST00000081702.12	2439	10	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	6.70175948888899	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCTTTGTGAAGTGTATGG	NA	False	NA	9	True	AATAAA	-19	NA	88960215	88971280	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_88960345_88965182_88965248_88965555_88965635_88966153_88966321_88966853_88966995_88968900_88969012_88969105_88969246_88969476_88969650_88969728_88969841_88969958
ENSMUST00000081710.12	chr2	+	2631	16	FSM	ENSMUSG00000027012.16	ENSMUST00000081710.12	2631	16	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.1836893389456	786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCACTTTTACTTTTTGA	NA	False	NA	24	True	AATAAA	-26	NA	71042177	71093647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ENSMUST00000081721.13	chr6	-	2787	20	FSM	ENSMUSG00000029687.17	ENSMUST00000081721.13	2787	20	0	0	0	0	multi-exon	TRUE	canonical	3	406	junction_7	166.792654135859	3573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTGTTAGTATTGCATG	NA	False	NA	NA	False	AATAAA	-26	NA	47571964	47507072	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
ENSMUST00000081742.7	chr4	+	2762	6	FSM	ENSMUSG00000065999.14	ENSMUST00000081742.7	2762	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	34.5913283931103	1494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147637795	147669655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_147637884_147646898_147646979_147647371_147647416_147661528_147661587_147665698_147665826_147667290
ENSMUST00000081838.7	chr2	-	1187	5	FSM	ENSMUSG00000015335.17	ENSMUST00000081838.7	1187	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	253.22754095872	2517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCCATGCTGCCGTGGAC	NA	False	NA	-10	True	ATTAAA	-9	NA	29983647	29980962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_29981579_29981678_29981846_29981999_29982078_29982416_29982554_29983458
ENSMUST00000081840.6	chr6	-	517	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	0	0	0	0	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	223070	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTATGTTTTTGGTAAC	NA	False	NA	-24	True	AATAAA	-22	NA	115785708	115782465	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
ENSMUST00000081848.13	chr3	-	1237	10	FSM	ENSMUSG00000059743.13	ENSMUST00000081848.13	1237	10	0	0	0	0	multi-exon	FALSE	canonical	3	1662	junction_9	235.997175124336	22227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	-3	True	AATAAA	-14	NA	89009266	89000894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89009168
ENSMUST00000081940.11	chr8	-	541	4	FSM	ENSMUSG00000090137.9	ENSMUST00000081940.11	541	4	0	0	0	0	multi-exon	FALSE	canonical	3	1892	junction_3	9741.86690983247	97310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGGTGTCTAGAGTGAC	NA	False	NA	-7	True	AATAAA	-25	NA	70963067	70960915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70961179_70961945_70962033_70962170_70962282_70962987
ENSMUST00000081946.5	chr7	-	1515	11	FSM	ENSMUSG00000003438.18	ENSMUST00000081946.5	1515	11	0	0	0	0	multi-exon	FALSE	canonical	3	2125	junction_9	150.487341660354	4672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCGTGTGTGGCTCTGT	2656	False	NA	-1	True	NA	NA	NA	28011497	28004940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009503_28009526_28009720_28009753_28010293_28010445_28011349
ENSMUST00000081980.7	chr11	+	1920	2	FSM	ENSMUSG00000061650.7	ENSMUST00000081980.7	1920	2	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_1	0	1489	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATGGTTTGCCTGTTGGC	NA	False	NA	10	True	ATTAAA	-21	NA	59839031	59853031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_59839305_59851384
ENSMUST00000082092.5	chr11	+	345	5	FSM	ENSMUSG00000057322.13	ENSMUST00000082092.5	345	5	0	0	0	0	multi-exon	FALSE	canonical	3	1304	junction_1	7543.63564122102	214538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559451	114563157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_114559512_114559606_114559641_114559731_114559793_114562559_114562683_114563090
ENSMUST00000082094.5	chr6	-	2581	24	FSM	ENSMUSG00000063884.7	ENSMUST00000082094.5	2581	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	208.34992196086	1298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTTTGTAAGCGTGTAC	3048	False	NA	-3	True	AATAAA	-26	NA	71885734	71857623	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866354_71866577_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
ENSMUST00000082120.5	chr8	-	1772	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	0	0	0	0	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	17315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGAGTTCAATTTCTGG	NA	False	NA	NA	False	AATAAA	-17	NA	43760017	43748103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
ENSMUST00000082134.6	chr7	+	1109	5	FSM	ENSMUSG00000037563.16	ENSMUST00000082134.6	1109	5	0	0	0	0	multi-exon	FALSE	canonical	3	19383	junction_3	806.134294023024	335762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTCTGGCCTTTATGGT	NA	False	NA	NA	False	NA	NA	NA	28050076	28052580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28050277_28050416_28050519_28051601_28051699_28051787_28051836_28051918
ENSMUST00000082136.7	chr12	-	1926	4	FSM	ENSMUSG00000059436.14	ENSMUST00000082136.7	1926	4	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	8.28653526310404	2272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCGGTAGTAGTGTCTTC	NA	False	NA	-5	True	AATAAA	-15	NA	77008975	76984047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_76985530_76986740_76986865_76999942_77000051_77008763
ENSMUST00000082223.13	chr5	+	2045	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	0	0	0	0	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	45548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTGGCATTCTTAATT	NA	False	NA	24	True	AATAAA	-18	NA	108048367	108056871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
ENSMUST00000082283.10	chr11	+	533	3	FSM	ENSMUSG00000059278.10	ENSMUST00000082283.10	533	3	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_1	636	9812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286639	69287506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69286799_69286973_69287187_69287345
ENSMUST00000082319.15	chr18	+	1115	8	FSM	ENSMUSG00000024400.17	ENSMUST00000082319.15	1115	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	160.52299727161	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTAGTTTTTCCCTCT	5647	False	NA	NA	False	AGTAAA	-17	NA	31937142	31974695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_31974492
ENSMUST00000082365.6	chr15	-	2383	7	FSM	ENSMUSG00000018865.10	ENSMUST00000082365.6	2383	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	29.8105126870818	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTTGTCTGTGTGC	NA	False	NA	-1	True	AATAAA	-17	NA	83989955	83960297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_83961784_83964387_83964527_83970800_83970896_83974159_83974287_83974792_83974874_83976490_83976622_83989631
ENSMUST00000082429.8	chr9	+	1072	2	FSM	ENSMUSG00000063856.9	ENSMUST00000082429.8	1072	2	0	0	0	0	multi-exon	FALSE	canonical	3	8868	junction_1	0	135922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTGTGTCCTGTGTCA	NA	False	NA	18	True	AATAAA	-18	NA	108216252	108217542	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108216758_108216975
ENSMUST00000082430.11	chr11	+	1594	5	FSM	ENSMUSG00000018339.13	ENSMUST00000082430.11	1594	5	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_4	9.98436277385793	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAGCCTACTTGGAATTT	NA	False	NA	9	True	AGTAAA	-16	NA	54793597	54801203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_54793879_54797952_54798107_54799366_54799485_54799865_54799966_54800262
ENSMUST00000082431.6	chr12	-	1010	2	FSM	ENSMUSG00000042808.11	ENSMUST00000082431.6	1010	2	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	0	1271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCTGGGTCTCTGTCTTC	NA	False	NA	-5	True	AATAAA	-16	NA	76842273	76839110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_76839775_76841927
ENSMUST00000082437.11	chr3	+	1514	5	FSM	ENSMUSG00000037072.17	ENSMUST00000082437.11	1514	5	0	0	0	0	multi-exon	FALSE	canonical	3	1325	junction_1	27.3404462289846	10489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGCTTTGTCCTTTCGTG	NA	False	NA	28	True	AATAAA	-30	NA	144276186	144303441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_144276561_144283346_144283515_144296372_144296437_144300661_144300712_144302583
ENSMUST00000083839.3	chr3	+	166	1	FSM	ENSMUSG00000119774.1	ENSMUST00000083839.3	166	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	680	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAACTGGTAACCAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	96357761	96357927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96357800_96357900
ENSMUST00000084097.12	chr4	+	1159	4	FSM	ENSMUSG00000065990.13	ENSMUST00000084097.12	1159	4	0	0	0	0	multi-exon	FALSE	canonical	3	1785	junction_1	303.738191357111	19417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGGAACCCAGGGCCCAAG	NA	False	NA	96	True	AAAAAG	-9	NA	155915807	155917587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155916193_155916439_155916528_155916808_155917255_155917347
ENSMUST00000084124.7	chr4	-	2218	13	FSM	ENSMUSG00000028961.16	ENSMUST00000084124.7	2218	13	0	0	0	0	multi-exon	FALSE	canonical	1	98	junction_7	73.9915066447194	2771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTCTTTGTTTCTTCTCC	NA	False	NA	-8	True	AATAAA	-16	NA	149251164	149234447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
ENSMUST00000084141.6	chr17	-	3686	5	FSM	ENSMUSG00000069743.6	ENSMUST00000084141.6	3686	5	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_3	11.3880419739304	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACTCGAACTTGGTTGT	NA	False	NA	-12	True	NA	NA	NA	22064740	22035865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_22039170_22040050_22040178_22042824_22042873_22059604_22059696_22064624
ENSMUST00000084149.10	chr4	+	2813	7	FSM	ENSMUSG00000067916.10	ENSMUST00000084149.10	2813	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	76.9805170156709	2086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATTCAAATGAGCCAAT	NA	False	NA	NA	False	AATAAA	-20	NA	147216494	147265036	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_147216647_147219028_147219122_147224494_147224577_147249797_147249844_147260303_147260362_147261203_147261331_147262781
ENSMUST00000084219.12	chr4	+	2647	10	FSM	ENSMUSG00000066037.15	ENSMUST00000084219.12	2647	10	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	166.354225660371	976	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCATTGATTGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	136038335	136068174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_136038401_136043671_136043796_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
ENSMUST00000084250.11	chr4	-	2285	10	FSM	ENSMUSG00000028896.14	ENSMUST00000084250.11	2285	10	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_9	35.0019399815087	2526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTTATGCGTGTCC	5439	False	NA	-10	True	AATAAA	-21	NA	132073058	132059229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132072956
ENSMUST00000084296.10	chr4	-	1626	10	FSM	ENSMUSG00000028873.17	ENSMUST00000084296.10	1626	10	0	0	0	0	multi-exon	FALSE	canonical	3	1430	junction_6	123.940846105444	6334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTCGGTCATCTGCATT	NA	False	NA	-10	True	AATAAA	-26	NA	124830710	124812257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
ENSMUST00000084309.12	chr4	+	924	5	FSM	ENSMUSG00000066058.12	ENSMUST00000084309.12	924	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.11803398874989	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGACATCATCCTATCTG	3305	False	NA	NA	False	NA	NA	NA	119112610	119117052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_119112993_119114082_119114248_119114348_119114434_119116004_119116158_119116913
ENSMUST00000084319.11	chr4	+	1134	7	FSM	ENSMUSG00000006392.17	ENSMUST00000084319.11	1134	7	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_2	198.998673920763	2923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	False	NA	32	True	NA	NA	NA	118266533	118272308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_118266584_118268081_118268201_118268894_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
ENSMUST00000084383.10	chrX	+	3172	23	FSM	ENSMUSG00000031060.17	ENSMUST00000084383.10	3172	23	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_9	72.7799809002085	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTCATGTCCTAGTAT	555	False	NA	41	True	AATAAA	-29	NA	20484021	20517140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
ENSMUST00000084500.8	chr7	-	2152	10	FSM	ENSMUSG00000030934.10	ENSMUST00000084500.8	2152	10	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_6	42.9636653837854	1284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGATGTGAATCTATTTA	NA	False	NA	-5	True	AATAAA	-24	NA	132178127	132159206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_132160060_132161374_132161520_132162480_132162595_132163512_132163642_132164315_132164439_132165935_132166064_132168497_132168594_132168794_132169020_132171634_132171870_132178023
ENSMUST00000084502.7	chr7	+	2218	8	FSM	ENSMUSG00000066979.7	ENSMUST00000084502.7	2218	8	0	0	0	0	multi-exon	FALSE	canonical	3	1325	junction_6	52.1422700554033	1676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCCAGGTGTGTTACCT	NA	False	NA	8	True	ATTAAA	-17	NA	131161950	131173621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
ENSMUST00000084525.12	chr4	-	819	4	FSM	ENSMUSG00000066149.12	ENSMUST00000084525.12	819	4	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_3	9.67241208569794	3854	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGACGTCCTTAAAGGT	2664	False	NA	NA	False	AATAAA	-18	NA	62326879	62312819	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_62313259_62320960_62321153_62322692_62322790_62326788
ENSMUST00000084526.12	chr4	+	3718	5	FSM	ENSMUSG00000066150.13	ENSMUST00000084526.12	3718	5	0	0	0	0	multi-exon	FALSE	canonical	3	753	junction_3	40.1932830209228	2012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTCTGTCTACACACT	NA	False	NA	23	True	AATAAA	-23	NA	62278963	62310006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_62279081_62303728_62303916_62304327_62304401_62306103_62306273_62306834
ENSMUST00000084530.9	chr4	+	1820	4	FSM	ENSMUSG00000066152.12	ENSMUST00000084530.9	1820	4	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_3	15.369522511198	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGTTGGTCCGTTTC	NA	False	NA	9	True	AATAAA	-20	NA	62204685	62216648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_62204812_62210868_62210936_62214123_62214314_62215211
ENSMUST00000084721.8	chr13	+	1222	3	FSM	ENSMUSG00000078941.10	ENSMUST00000084721.8	1222	3	0	0	0	0	multi-exon	FALSE	canonical	3	1279	junction_2	251.5	5666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTGGTACTTTGGCAGT	NA	False	NA	NA	False	AATAAA	-20	NA	100787850	100792567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_100787954_100790698_100790792_100791541
ENSMUST00000084733.7	chr9	+	1041	3	FSM	ENSMUSG00000066233.7	ENSMUST00000084733.7	1041	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	1.5	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATATGGAATTTG	NA	False	NA	NA	False	AATAAA	-16	NA	122850390	122852552	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_122850636_122851230_122851378_122851903
ENSMUST00000084846.12	chr4	-	3740	18	FSM	ENSMUSG00000028809.17	ENSMUST00000084846.12	3740	18	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_11	319.821966045795	1069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACATTGCCACTCACAT	NA	False	NA	-7	True	AATAAA	-12	NA	135080555	135047801	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067919_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
ENSMUST00000084867.9	chr9	-	874	4	FSM	ENSMUSG00000032436.18	ENSMUST00000084867.9	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	609.72343457232	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGTTTCCTTATTGCATG	NA	False	NA	-17	True	AATAAA	-13	NA	114610900	114585906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_114586360_114587872_114587955_114592286_114592461_114610735
ENSMUST00000084937.11	chr7	+	2092	7	FSM	ENSMUSG00000045411.17	ENSMUST00000084937.11	2092	7	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	279.849612391291	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896210	43901739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_43896248_43896661_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUST00000084947.10	chr12	+	2433	3	FSM	ENSMUSG00000060950.13	ENSMUST00000084947.10	2433	3	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_2	1	1098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTGTCTTGTTCCCACA	NA	False	NA	5	True	AATAAA	-17	NA	111644538	111650336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_111645397_111647235_111647503_111649028
ENSMUST00000084974.11	chr12	-	1132	7	FSM	ENSMUSG00000056458.17	ENSMUST00000084974.11	1132	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	105.076162853427	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7669	False	NA	-3	True	AATATA	-18	NA	110807364	110774231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_110774556_110774638_110774840_110776342_110776458_110779948_110780128_110781401_110781451_110781564_110781644_110807179
ENSMUST00000085017.5	chr7	+	1494	8	FSM	ENSMUSG00000030613.14	ENSMUST00000085017.5	1494	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	63.9607660354122	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTGTAAATGTGTTAT	NA	False	NA	10	True	AATAAA	-18	NA	92210356	92231502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_92210844_92216829_92216950_92217679_92217784_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231002
ENSMUST00000085018.6	chr9	+	1846	6	FSM	ENSMUSG00000032599.13	ENSMUST00000085018.6	1846	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	11.6516093309036	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGCTGTCGTTCTTTCT	NA	False	NA	19	True	AATACA	-23	NA	108673192	108683536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108673596_108675308_108675378_108675469_108675693_108676440_108676617_108681740_108681917_108682737
ENSMUST00000085065.12	chr12	+	977	7	FSM	ENSMUSG00000064215.14	ENSMUST00000085065.12	977	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	6.23832242407097	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCATTGTTCCCCTTTC	6634	False	NA	5	True	AATAAA	-19	NA	103400517	103406498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_103400610_103401680_103401833_103402821_103402942_103403648_103403784_103403934_103403965_103405659_103405822_103406212
ENSMUST00000085192.7	chr12	-	3399	12	FSM	ENSMUSG00000021238.12	ENSMUST00000085192.7	3399	12	0	0	0	0	multi-exon	FALSE	canonical	2	131	junction_11	16.2917613413438	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTCTTTTCCTTCTTTTG	NA	False	NA	NA	False	AATAAA	-33	NA	84497777	84477490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_84479323_84480205_84480305_84480629_84480810_84483101_84483284_84483502_84483693_84484748_84484871_84486186_84486490_84487008_84487088_84488536_84488699_84488844_84488920_84490502_84490563_84497662
ENSMUST00000085248.12	chr9	-	1882	13	FSM	ENSMUSG00000062270.15	ENSMUST00000085248.12	1882	13	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_10	2408.59367105002	23155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGCCGTGTTATCAA	NA	False	NA	NA	False	AATAAA	-24	NA	89996768	89973717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89985707_89985825_89989287_89989356_89992178_89992226_89996588
ENSMUST00000085256.8	chr9	+	816	3	FSM	ENSMUSG00000066442.18	ENSMUST00000085256.8	816	3	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	109	4798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTAGAATATTAATGCAA	NA	False	NA	NA	False	AATAAA	-35	NA	89093209	89122293	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_89093365_89097261_89097524_89121894
ENSMUST00000085272.7	chr7	+	1418	6	FSM	ENSMUSG00000039745.9	ENSMUST00000085272.7	1418	6	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_1	99.2685247195706	1864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9894	False	NA	-5	True	NA	NA	NA	49408876	49423723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_49409060_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUST00000085340.7	chr18	+	555	1	FSM	ENSMUSG00000066475.7	ENSMUST00000085340.7	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	542	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAATGC	NA	False	NA	NA	False	AAGAAA	-34	NA	38377880	38378435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_38377900_38378400
ENSMUST00000085375.13	chr7	+	1185	10	FSM	ENSMUSG00000003423.16	ENSMUST00000085375.13	1185	10	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	85.8518678298646	1168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTCCAGACAATGATGCAT	NA	False	NA	20	True	AATAAA	-20	NA	44803737	44809488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44803965_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUST00000085393.13	chr9	+	2328	10	FSM	ENSMUSG00000011958.18	ENSMUST00000085393.13	2328	10	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_9	27.3933397330153	1554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGGGTCTTAATTACCT	NA	False	NA	17	True	AATAAA	-17	NA	69896785	69915537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69914345
ENSMUST00000085519.13	chr9	+	2113	7	FSM	ENSMUSG00000032249.15	ENSMUST00000085519.13	2113	7	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_5	26.6546848081575	8284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCTTCCTTTGAGTCTT	NA	False	NA	25	True	AATAAA	-25	NA	62248610	62286094	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
ENSMUST00000085554.5	chr5	+	1009	4	FSM	ENSMUSG00000029651.17	ENSMUST00000085554.5	1009	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	28.87136220471	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGAATTATTGGGAAATG	NA	False	NA	NA	False	NA	NA	NA	148239983	148250810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_148240080_148240292_148240413_148243439_148243538_148250115
ENSMUST00000085633.12	chr1	-	1089	9	FSM	ENSMUSG00000026632.18	ENSMUST00000085633.12	1089	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	13.3860935302276	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTTTAAAAAAGGAATGAT	NA	False	NA	0	True	TATAAA	-20	NA	190795101	190778034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_190778518_190781478_190781560_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
ENSMUST00000085651.12	chr9	+	2024	8	FSM	ENSMUSG00000032336.18	ENSMUST00000085651.12	2024	8	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_5	36.1815151813233	821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGAATAATACTCTTTA	537	False	NA	NA	False	AATAAA	-16	NA	58489574	58560161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58557779_58557802_58558540_58558616_58559141
ENSMUST00000085720.3	chr12	+	315	1	FSM	ENSMUSG00000066629.3	ENSMUST00000085720.3	315	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2434	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGAACCCTCCCCCAATA	NA	False	NA	NA	False	NA	NA	NA	12962022	12962337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_12962000_12962300
ENSMUST00000085741.2	chr12	+	1000	3	FSM	ENSMUSG00000066637.3	ENSMUST00000085741.2	1000	3	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_2	13	1842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAATAAAACAAAAGA	NA	False	NA	NA	False	NA	NA	NA	9079996	9086394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_9080197_9084921_9085089_9085761
ENSMUST00000085792.5	chr7	-	2764	5	FSM	ENSMUSG00000050855.17	ENSMUST00000085792.5	2764	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	10.6624340560681	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGTGTGACTTTGTGGTG	3444	False	NA	-4	True	AATAAA	-21	NA	29553073	29543360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_29545674_29545893_29545990_29546258_29546386_29550366_29550443_29552921
ENSMUST00000085797.6	chr1	+	2473	4	FSM	ENSMUSG00000066652.6	ENSMUST00000085797.6	2473	4	0	0	0	0	multi-exon	FALSE	canonical	3	1148	junction_3	71.1071179434395	2387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGAGAGCGAGTCATCGA	NA	False	NA	21	True	AATAAA	-19	NA	180720672	180726668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014
ENSMUST00000085835.8	chr7	+	2724	32	FSM	ENSMUSG00000037337.12	ENSMUST00000085835.8	2724	32	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_17	22.4346431975332	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTCGGAGGAGAGATTTT	NA	False	NA	22	True	AATAAA	-27	NA	28682252	28702703	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28682480_28682639_28682698_28682814_28682906_28683507_28683573_28686072_28686129_28686216_28686265_28686412_28686456_28686539_28686613_28687498_28687631_28688018_28688082_28688179_28688262_28688760_28688875_28689098_28689178_28690412_28690472_28690572_28690617_28690705_28690751_28692614_28692658_28693392_28693556_28693629_28693713_28694889_28694914_28695513_28695599_28697876_28697954_28698037_28698099_28699197_28699307_28699388_28699448_28699615_28699720_28700359_28700535_28701031_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
ENSMUST00000085851.12	chr7	-	1243	6	FSM	ENSMUSG00000030595.16	ENSMUST00000085851.12	1243	6	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	23.6761483354029	3817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCTTCCTGCTTATTT	NA	False	NA	1	True	AATAAA	-33	NA	28465939	28458456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28458630_28459251_28459522_28459601_28459691_28461026_28461361_28461450_28461557_28465668
ENSMUST00000085909.9	chr9	+	2126	11	FSM	ENSMUSG00000032076.21	ENSMUST00000085909.9	2126	11	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_9	77.3110600108419	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	47441554	47762327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_47441804_47699268_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47740674_47740708_47759464_47759597_47761569
ENSMUST00000085912.10	chr1	+	2182	8	FSM	ENSMUSG00000038034.16	ENSMUST00000085912.10	2182	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	261.703446438046	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGTTGTGTCTTCTCTT	3147	False	NA	19	True	AATAAA	-19	NA	172139337	172147408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_172139366_172140057_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120_172146535_172146859_172146991_172147150
ENSMUST00000085941.12	chr5	-	740	5	FSM	ENSMUSG00000059518.15	ENSMUST00000085941.12	740	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	104.169033306449	1913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTCATTCTGGGGTAT	NA	False	NA	6	True	AATAAA	-22	NA	137015755	137011043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137015664
ENSMUST00000086032.4	chr1	-	1602	8	FSM	ENSMUSG00000026577.14	ENSMUST00000086032.4	1602	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_7	61.8978750747997	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACATACCCATGAAGCTA	NA	False	NA	-24	True	AATAAA	-19	NA	164135058	164119698	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715_164134924_164135010
ENSMUST00000086046.10	chr5	+	2112	10	FSM	ENSMUSG00000029432.13	ENSMUST00000086046.10	2112	10	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_9	37.917389085507	2389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTGCACGATTGAGACC	7767	False	NA	18	True	AATAAA	-17	NA	129802126	129835391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129802286_129816535_129816676_129816781_129816828_129821768_129821864_129822279_129822351_129823390_129823532_129825065_129825098_129830289_129830385_129831905_129831990_129834142
ENSMUST00000086058.13	chr19	+	1388	11	FSM	ENSMUSG00000071657.13	ENSMUST00000086058.13	1388	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	60.1671837466239	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTTGTGTGGACATCC	NA	False	NA	13	True	AATAAA	-13	NA	8817882	8826030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8817933_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
ENSMUST00000086075.13	chr5	-	2521	13	FSM	ENSMUSG00000037936.16	ENSMUST00000086075.13	2521	13	0	0	0	0	multi-exon	TRUE	canonical	3	188	junction_1	171.680966232913	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTTCTGTGACTGTT	NA	False	NA	-1	True	AATAAA	-21	NA	125418158	125354150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_125354930_125358168_125358298_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
ENSMUST00000086112.8	chr7	+	836	5	FSM	ENSMUSG00000008036.12	ENSMUST00000086112.8	836	5	0	0	0	0	multi-exon	FALSE	canonical	3	580	junction_2	14.0423466699836	8411	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTGTCTGAGCCCTCAT	NA	False	NA	19	True	AATAAA	-19	NA	16472334	16483219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_16472464_16477143_16477294_16481185_16481300_16482613_16482674_16482836
ENSMUST00000086216.9	chr5	-	2760	17	FSM	ENSMUSG00000029472.14	ENSMUST00000086216.9	2760	17	0	0	0	0	multi-exon	TRUE	canonical	3	1165	junction_8	284.126264845403	14368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCATCCTCTTAAATC	NA	False	NA	NA	False	AATAAA	-2	NA	122959402	122925521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ENSMUST00000086248.7	chr7	+	1154	7	FSM	ENSMUSG00000070837.7	ENSMUST00000086248.8	1154	7	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_1	169.856802434678	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2794	False	NA	20	True	ATTAAA	-21	NA	6998381	7006090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_6998548_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
ENSMUST00000086349.5	chr7	+	1142	2	FSM	ENSMUSG00000051184.8	ENSMUST00000086349.5	1142	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCACTGTGTGTTCAGTC	2940	False	NA	5	True	AATAAA	-15	NA	5018468	5021486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_5018560_5020435
ENSMUST00000086370.11	chr2	-	812	3	FSM	ENSMUSG00000026831.17	ENSMUST00000086370.11	812	3	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	7	1123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCCACGCCTCTTATT	NA	False	NA	0	True	ATTAAA	-19	NA	28356344	28352012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_28352447_28355148_28355228_28356045
ENSMUST00000086399.6	chr9	+	2535	7	FSM	ENSMUSG00000037405.9	ENSMUST00000086399.6	2535	7	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_3	34.8456915876586	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGAGTTTGTGTACAG	NA	False	NA	16	True	AATAAA	-21	NA	20927280	20940113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_20927398_20930214_20930476_20936839_20937155_20937607_20937896_20938373_20938632_20938727_20938977_20939066
ENSMUST00000086458.10	chr9	-	2056	3	FSM	ENSMUSG00000066892.15	ENSMUST00000086458.10	2056	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	23	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTGTTGCACTTATTT	NA	False	NA	-4	True	ATTAAA	-18	NA	20556063	20549084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_20550495_20553319_20553393_20555490
ENSMUST00000086519.12	chr5	+	1358	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	0	0	0	0	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	205789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCCAAGCCTGGCCTTT	NA	False	NA	3	True	ATTAAA	-14	NA	115697525	115701786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
ENSMUST00000086535.12	chr1	+	1049	5	FSM	ENSMUSG00000073702.12	ENSMUST00000086535.12	1049	5	0	0	0	0	multi-exon	FALSE	canonical	3	7651	junction_1	2133.80345568658	377702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGGTTTGAACATGTTT	NA	False	NA	10	True	ATTAAA	-23	NA	39406922	39410992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_39407016_39407229_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUST00000086635.9	chr5	+	2761	12	FSM	ENSMUSG00000050017.12	ENSMUST00000086635.9	2761	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	273.518821024341	801	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	16	True	AATAAA	-17	NA	111478628	111536225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494441_111494985_111494994_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
ENSMUST00000086643.12	chr5	-	1868	7	FSM	ENSMUSG00000029507.17	ENSMUST00000086643.12	1868	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_4	212.004454879818	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110928462	110921532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110924419_110924474_110925479_110925618_110927552_110927764_110928105
ENSMUST00000086725.6	chr1	+	2858	2	FSM	ENSMUSG00000067017.6	ENSMUST00000086725.6	2858	2	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTATCCATGCCACACTG	NA	False	NA	NA	False	AATAAA	-29	NA	105383695	105386554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_105384509_105384509
ENSMUST00000086764.7	chr19	+	396	1	FSM	ENSMUSG00000067038.7	ENSMUST00000086764.7	396	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6981	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAATTTTGGCTGAAA	NA	False	NA	NA	False	AAGAAA	-1	NA	59310802	59311198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_59310800_59311200
ENSMUST00000086833.13	chr5	+	1411	8	FSM	ENSMUSG00000029304.15	ENSMUST00000086833.13	1411	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2820.707358093	20678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAGTCTGGTGGTGTCAA	NA	False	NA	29	True	AATAAA	-16	NA	104582983	104588914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104584766_104584770_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ENSMUST00000086851.2	chr1	-	1335	4	FSM	ENSMUSG00000067071.9	ENSMUST00000086851.2	1335	4	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	18.4932420089069	681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGTGTCCAATGTGTG	NA	False	NA	-1	True	AATAAA	-35	NA	91340944	91339204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_91340205_91340442_91340525_91340614_91340702_91340778
ENSMUST00000086869.6	chr17	+	1660	8	FSM	ENSMUSG00000003208.10	ENSMUST00000086869.6	1660	8	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_5	8.99205998963212	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCGTGTTGGAGTCTGCT	344	False	NA	8	True	NA	NA	NA	56266173	56275285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_56266262_56267712_56267814_56269018_56269164_56271129_56271265_56271485_56271668_56272168_56272290_56273507_56273638_56274527
ENSMUST00000086932.10	chr17	+	2342	9	FSM	ENSMUSG00000023990.19	ENSMUST00000086932.10	2342	9	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_4	27.2370955683604	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTCCTGGCTCTGCGGT	NA	False	NA	18	True	AGTAAA	-18	NA	48047954	48103344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_48048242_48096889_48097122_48097202_48097458_48097855_48097937_48098950_48099072_48099161_48099219_48099833_48099910_48100585_48100734_48102259
ENSMUST00000086969.13	chr19	+	2278	9	FSM	ENSMUSG00000025227.15	ENSMUST00000086969.13	2278	9	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	30.2561977122044	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTTGGGTCTGTGCCG	4198	False	NA	13	True	AGTAAA	-13	NA	46345318	46363691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_46345424_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884
ENSMUST00000087026.13	chr17	-	1314	9	FSM	ENSMUSG00000067148.16	ENSMUST00000087026.13	1314	9	0	0	0	0	multi-exon	FALSE	canonical	3	702	junction_8	54.719597723302	7873	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTTTTTTTTGTCTA	NA	False	NA	2	True	AATAAA	-25	NA	46558980	46554845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46555147_46555231_46555349_46555451_46555602_46555724_46555878_46555956_46556077_46556541_46556675_46557032_46557141_46558654_46558727_46558820
ENSMUST00000087133.11	chr5	+	3371	19	FSM	ENSMUSG00000036435.14	ENSMUST00000087133.11	3371	19	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_10	33.5248203611431	105	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATATTCTTAAGCCTTATA	NA	False	NA	17	True	AATAAA	-27	NA	76677157	76718141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76705665_76705711_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
ENSMUST00000087215.7	chr1	+	3268	8	FSM	ENSMUSG00000026174.10	ENSMUST00000087215.7	3268	8	0	0	0	0	multi-exon	FALSE	canonical	3	963	junction_5	46.4318680148337	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTTTTGTTTTTAAAT	860	False	NA	38	True	AATAAA	-23	NA	74545216	74570001	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_74545621_74556228_74556409_74558059_74558176_74561476_74561587_74562662_74562773_74566150_74566250_74566750_74566843_74567844
ENSMUST00000087324.7	chr5	+	2369	14	FSM	ENSMUSG00000029171.13	ENSMUST00000087324.7	2369	14	0	0	0	0	multi-exon	FALSE	canonical	3	609	junction_6	76.13589532023	958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATAAGGTTTATTTTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	64250292	64285694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
ENSMUST00000087342.13	chr17	-	392	4	FSM	ENSMUSG00000067288.14	ENSMUST00000087342.13	392	4	0	0	0	0	multi-exon	FALSE	canonical	3	4589	junction_1	7337.59253585413	276422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTTTCCAGCAGCGTC	NA	False	NA	-11	True	AATAAA	-28	NA	34043536	34042009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34042091_34042170_34042305_34043272_34043321_34043407
ENSMUST00000087351.9	chr15	+	1737	10	FSM	ENSMUSG00000046434.17	ENSMUST00000087351.9	1737	10	0	0	0	0	multi-exon	FALSE	canonical	3	9291	junction_7	1545.88284736515	16310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	False	NA	-1	True	AATAAA	-17	NA	103148880	103153382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
ENSMUST00000087359.6	chr1	-	631	3	FSM	ENSMUSG00000070870.7	ENSMUST00000087359.6	631	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	7	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGTTCTCTGTTCCTTTC	NA	False	NA	NA	False	AATAAA	-28	NA	65090308	65087712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_65088056_65089928_65090172_65090263
ENSMUST00000087445.7	chr6	+	1775	5	FSM	ENSMUSG00000067338.7	ENSMUST00000087445.7	1775	5	0	0	0	0	multi-exon	FALSE	canonical	3	1181	junction_3	43.6312674580971	5188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGCTTCCCTGTGTGCT	NA	False	NA	16	True	AATAAA	-36	NA	145561482	145567205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_145561816_145563958_145564182_145564457_145564607_145564908_145565590_145566816
ENSMUST00000087475.11	chr1	-	1823	13	FSM	ENSMUSG00000038079.15	ENSMUST00000087475.11	1823	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	58.3887237020604	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAAGCTTTATTAACTG	4340	False	NA	-17	True	AATAAA	-17	NA	59158965	59139755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59156489_59156501_59157133_59157166_59158861
ENSMUST00000087511.10	chr5	+	1291	5	FSM	ENSMUSG00000067365.12	ENSMUST00000087511.10	1291	5	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_4	19.5751756058534	4456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTAATGCAAATTTGG	NA	False	NA	NA	False	AATAAA	-25	NA	38417528	38426978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_38417837_38419340_38419483_38422155_38422315_38424522_38424629_38426402
ENSMUST00000087514.9	chr5	+	1563	9	FSM	ENSMUSG00000067367.10	ENSMUST00000087514.9	1563	9	0	0	0	0	multi-exon	FALSE	canonical	3	2026	junction_5	151.553981719386	6891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTATGATAACAAATTCTTG	NA	False	NA	23	True	AATAAA	-24	NA	38377813	38391650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_38377980_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
ENSMUST00000087557.12	chrX	-	1765	8	FSM	ENSMUSG00000067377.13	ENSMUST00000087557.12	1765	8	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_3	4.33777898591114	593	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCGTTTTAATTTTTAGA	NA	False	NA	4	True	AATAAA	-42	NA	132799178	132791816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_132792673_132793410_132793516_132795247_132795332_132795676_132795812_132796183_132796283_132797431_132797507_132797872_132798062_132798956
ENSMUST00000087559.8	chr17	+	1191	5	FSM	ENSMUSG00000002308.17	ENSMUST00000087559.8	1191	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	143.673240375513	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGCCTCTAGCCTGT	7328	False	NA	21	True	ATTAAA	-14	NA	34062399	34067725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34062606_34064989_34065116_34066468_34066700_34066990_34067153_34067259
ENSMUST00000087563.7	chr2	+	1346	6	FSM	ENSMUSG00000039069.20	ENSMUST00000087563.7	1346	6	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_4	31.6884837125414	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179720415	179727695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
ENSMUST00000087566.11	chr7	-	1549	10	FSM	ENSMUSG00000030695.17	ENSMUST00000087566.11	1549	10	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_9	8041.23258932084	3534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	-5	True	AATAAA	-16	NA	126398313	126394407	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397145_126397299_126398216
ENSMUST00000087582.13	chr17	-	2370	17	FSM	ENSMUSG00000059208.16	ENSMUST00000087582.13	2370	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	626.847466369411	9377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCTTGCCTTTTTTG	5740	False	NA	-8	True	AATAAA	-13	NA	33904393	33865212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33888142_33888151_33889054_33889108_33896247_33896415_33904240
ENSMUST00000087585.10	chr1	-	882	10	FSM	ENSMUSG00000025977.16	ENSMUST00000087585.10	882	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	6.71831842570265	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTCTGGTTTTCTTCC	NA	False	NA	NA	False	ATTAAA	-19	NA	55402478	55339227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_55339345_55343656_55343786_55344834_55344883_55362808_55362881_55379631_55379760_55385535_55385612_55388039_55388095_55394806_55394899_55399774_55399919_55402457
ENSMUST00000087654.5	chr17	-	3407	4	FSM	ENSMUSG00000067430.8	ENSMUST00000087654.5	3407	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	5.73488351136175	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGTTCAAATGAGATTT	2759	False	NA	-16	True	NA	NA	NA	33252376	33235836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_33238944_33240431_33240484_33240679_33240807_33252255
ENSMUST00000087675.9	chr6	+	1729	9	FSM	ENSMUSG00000030225.12	ENSMUST00000087675.9	1729	9	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_6	37.3511629671688	1391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTTGTTTATTTTC	NA	False	NA	20	True	AATACA	-20	NA	137731555	137814892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_137731637_137755121_137755220_137756507_137756656_137757727_137757824_137759926_137760062_137773751_137773881_137807190_137807304_137813731_137813882_137814113
ENSMUST00000087737.10	chr5	-	1987	6	FSM	ENSMUSG00000059866.14	ENSMUST00000087737.10	1987	6	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	11.160645142643	378	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGAGCTGGGCTGGA	NA	False	NA	-10	True	AATAAA	-19	NA	34671335	34653430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_34654295_34656523_34656644_34656831_34657081_34658251_34658342_34660880_34661172_34670962
ENSMUST00000087896.11	chrX	-	1255	8	FSM	ENSMUSG00000067561.13	ENSMUST00000087896.11	1255	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	63.8378046781251	267	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101896962	101891244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101896936
ENSMUST00000087916.11	chrX	-	1936	11	FSM	ENSMUSG00000067567.13	ENSMUST00000087916.11	1936	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	12.0747670784989	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCGTCCCACCGCTCTGT	NA	False	NA	-1	True	AATAAA	-15	NA	101548965	101328244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_101328775_101351244_101351351_101446190_101446286_101449142_101449316_101471720_101471830_101472369_101472448_101476090_101476204_101541736_101541879_101543427_101543559_101548004_101548058_101548559
ENSMUST00000087951.7	chr19	+	2686	5	FSM	ENSMUSG00000048832.10	ENSMUST00000087951.7	2686	5	0	0	0	0	multi-exon	TRUE	canonical	3	85	junction_1	17.2699160391705	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGGTGTCCATGATGAG	NA	False	NA	16	True	AATAAA	-19	NA	10666114	10691990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_10666344_10683573_10683673_10687633_10687806_10688634_10688718_10689887
ENSMUST00000087971.11	chr2	-	2438	6	FSM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	0	0	0	0	multi-exon	FALSE	canonical	3	382	junction_1	95.1075181045116	1112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTGTATTGTATAGTTT	NA	False	NA	0	True	AATAAA	-29	NA	168797192	168767280	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_168768854_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
ENSMUST00000088169.7	chr19	-	2762	7	FSM	ENSMUSG00000024758.16	ENSMUST00000088169.7	2762	7	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_1	35.2735343029618	2424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAGTCTGCAACTTTAT	9039	False	NA	-18	True	AATAAA	-17	NA	7460567	7403265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_7405241_7407115_7407175_7408350_7408398_7409330_7409401_7409816_7409956_7412295_7412504_7460303
ENSMUST00000088223.7	chr19	+	1103	7	FSM	ENSMUSG00000047656.10	ENSMUST00000088223.7	1103	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	9.59166304662544	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGTGGTTCCTCATCCG	NA	False	NA	38	True	ATTAAA	-44	NA	6973539	6976414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876_6975934_6976025_6976137_6976259
ENSMUST00000088246.6	chr6	-	1509	5	FSM	ENSMUSG00000067702.6	ENSMUST00000088246.6	1509	5	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_2	43.4453679924569	5620	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCATTTCCTCTCTAGTGT	3461	False	NA	-8	True	AATAAA	-28	NA	125263005	125255236	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_125255618_125257932_125258614_125259315_125259465_125259718_125259942_125262930
ENSMUST00000088248.13	chr2	+	967	6	FSM	ENSMUSG00000001403.14	ENSMUST00000088248.13	967	6	0	0	0	0	multi-exon	FALSE	canonical	3	1606	junction_1	43.6458474542539	12118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTCTCAAGTTACCCT	NA	False	NA	NA	False	AATAAA	-25	NA	164611817	164614827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_164612001_164612286_164612315_164613212_164613300_164613773_164613979_164614086_164614147_164614423
ENSMUST00000088257.14	chr19	+	957	5	FSM	ENSMUSG00000038812.17	ENSMUST00000088257.14	957	5	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_1	358.400875417458	7183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATACATTAAAATAGAGTCT	9265	False	NA	37	True	ATTAAA	-37	NA	6887065	6888417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6887224_6887321_6887631_6887730_6887833_6887951_6888042_6888119
ENSMUST00000088313.5	chrX	+	1338	6	FSM	ENSMUSG00000001964.15	ENSMUST00000088313.5	1338	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	106.854293315711	1371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAAGG	NA	False	NA	NA	False	AATAAA	-13	NA	73298435	73305154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73304387
ENSMUST00000088464.12	chr17	-	2504	20	FSM	ENSMUSG00000052752.16	ENSMUST00000088464.12	2504	20	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_18	54.3646251286069	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24738182	24727823	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104
ENSMUST00000088481.5	chrX	-	1821	4	FSM	ENSMUSG00000043453.6	ENSMUST00000088481.5	1821	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	0.471404520791032	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCACATGCTCCAAATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	71430464	71425475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_71427050_71427946_71428036_71428780_71428874_71430399
ENSMUST00000088512.13	chr17	+	1816	8	FSM	ENSMUSG00000034681.18	ENSMUST00000088512.13	1816	8	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_1	319.314188567323	3719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGTTTTACTGTCTG	901	False	NA	NA	False	AATAAA	-24	NA	24633636	24644875	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24633709_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUST00000088610.11	chr2	+	569	3	FSM	ENSMUSG00000067847.14	ENSMUST00000088610.11	569	3	0	0	0	0	multi-exon	FALSE	canonical	3	748	junction_1	118.5	8471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCTATTTTTACCTAGTA	6351	False	NA	17	True	AATAAA	-22	NA	155985958	155987717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_155986201_155986378_155986510_155987521
ENSMUST00000088627.11	chrX	+	3949	3	FSM	ENSMUSG00000067860.12	ENSMUST00000088627.11	3949	3	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_2	9.5	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTTATAACTTTTTTTG	9500	False	NA	12	True	AATAAA	-18	NA	57076002	57081919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_57077598_57078721_57078886_57079729
ENSMUST00000088629.4	chrX	+	1951	3	FSM	ENSMUSG00000067860.12	ENSMUST00000088629.4	1951	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	99.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGATTATTGTTTTAT	9867	False	NA	NA	False	NA	NA	NA	57076369	57087096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_57077598_57078721_57078886_57086537
ENSMUST00000088652.6	chrX	+	2810	10	FSM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_1	40.9980427114861	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGACTTGAGTTAACTTG	NA	False	NA	16	True	AATAAA	-31	NA	56098974	56112543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_56099126_56099313_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56104245_56104410_56105213_56105314_56109476_56109567_56110365_56110504_56111005
ENSMUST00000088785.6	chr7	-	1709	4	FSM	ENSMUSG00000078768.3	ENSMUST00000088785.6	1709	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	16.2685791225499	457	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCTGTGTGGCAGTGTAA	9923	False	NA	2	True	AAAACA	-22	NA	29789952	29776761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_29778044_29780515_29780643_29786524_29786585_29789712
ENSMUST00000088787.7	chr17	+	2652	6	FSM	ENSMUSG00000067931.7	ENSMUST00000088787.7	2652	6	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_2	15.6025638918737	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCATGGAAAGATTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	21787269	21808961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_21787508_21789310_21789390_21794118_21794219_21803291_21803405_21805041_21805169_21806966
ENSMUST00000088874.10	chrX	+	1728	5	FSM	ENSMUSG00000015217.12	ENSMUST00000088874.10	1728	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	352.060630431748	2652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599595	70604282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_70599844_70601658_70601814_70602038_70602179_70602703_70602879_70603272
ENSMUST00000088922.5	chr14	-	1467	8	FSM	ENSMUSG00000067995.5	ENSMUST00000088922.5	1467	8	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_6	43.0538343595692	1371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGATGGCAACTGTTATC	NA	False	NA	-17	True	AATAAA	-19	NA	76248305	76134376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_76135094_76144222_76144367_76155073_76155174_76186877_76186960_76232860_76233006_76234348_76234368_76245144_76245219_76248119
ENSMUST00000089052.11	chr7	-	2344	9	FSM	ENSMUSG00000070426.13	ENSMUST00000089052.11	2344	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_8	114.601483410993	1022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTGGACACGCATTTGC	NA	False	NA	-15	True	AATAAA	-19	NA	101714676	101668358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714473
ENSMUST00000089059.9	chr2	+	1743	13	FSM	ENSMUSG00000019188.17	ENSMUST00000089059.9	1743	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	48.170054667466	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGAGCTCTCAGCAGCTC	NA	False	NA	21	True	ATTAAA	-35	NA	152511407	152546956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017_152528107_152530582_152530669_152530756_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152545914_152546115_152546541
ENSMUST00000089062.8	chrX	-	882	4	FSM	ENSMUSG00000068048.9	ENSMUST00000089062.8	882	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	21.013223349966	734	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTGGCTCCATTATCTT	1078	False	NA	-1	True	AATAAA	-16	NA	36990647	36987973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_36988177_36989156_36989203_36989828_36990289_36990474
ENSMUST00000089140.13	chr2	+	1486	10	FSM	ENSMUSG00000027455.17	ENSMUST00000089140.13	1486	10	0	0	0	0	multi-exon	FALSE	canonical	1	251	junction_3	435.093348860014	5182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAATTCTGTTATATAGAAA	NA	False	NA	24	True	AAGAAA	-6	NA	151336101	151353230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_151336333_151338503_151338602_151342634_151342710_151344374_151344381_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
ENSMUST00000089155.6	chr15	-	789	5	FSM	ENSMUSG00000068101.12	ENSMUST00000089155.6	789	5	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	529.66121247454	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTTGTAGATGCAGA	NA	False	NA	-17	True	AAAAAG	-14	NA	82128928	82118279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_82118711_82124079_82124160_82125527_82125621_82128333_82128414_82128823
ENSMUST00000089157.11	chr15	-	1202	6	FSM	ENSMUSG00000068101.12	ENSMUST00000089157.11	1202	6	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_2	108.849253557386	4995	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	82128949	82117979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128823
ENSMUST00000089174.6	chr15	+	2046	7	FSM	ENSMUSG00000068114.8	ENSMUST00000089174.6	2046	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	6.64371047599825	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGTCTTTGGCTTCTTTT	NA	False	NA	25	True	AATAAA	-36	NA	82012122	82026404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_82012251_82014252_82014372_82015624_82015747_82015945_82016031_82018781_82018964_82019270_82019343_82025066
ENSMUST00000089245.7	chr6	-	1638	8	FSM	ENSMUSG00000035378.18	ENSMUST00000089245.7	1638	8	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_2	71.8828411871905	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAGGTGTAAATAATTAG	NA	False	NA	-3	True	AATAAA	-17	NA	100648100	100550043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_100550750_100588696_100588818_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
ENSMUST00000089287.7	chr6	-	2257	18	FSM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_17	79.0590861340176	1743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTTAAAGTATATCAAT	NA	False	NA	-7	True	AATAAA	-24	NA	97182608	97160967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266_97182309_97182493
ENSMUST00000089377.6	chr15	+	800	4	FSM	ENSMUSG00000068220.7	ENSMUST00000089377.6	800	4	0	0	0	0	multi-exon	FALSE	canonical	3	1912	junction_2	63.4367576584918	12227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATGATGACACATACTT	NA	False	NA	NA	False	AATAAA	-15	NA	78810924	78814665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_78811005_78812169_78812250_78813832_78814005_78814197
ENSMUST00000089506.12	chr2	+	1432	4	FSM	ENSMUSG00000068264.12	ENSMUST00000089506.12	1432	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	24.4994331000173	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTCTTTTTGTGCG	NA	False	NA	11	True	ATTAAA	-17	NA	131052359	131055434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_131052602_131053182_131053394_131054366_131054657_131054745
ENSMUST00000089559.11	chr2	-	1238	9	FSM	ENSMUSG00000068290.12	ENSMUST00000089559.11	1238	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	130.411607995608	3212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGCCAGAAGTCCCACT	NA	False	NA	71	True	AATAAA	-18	NA	130506579	130495879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508_130500632_130503656_130503759_130503996_130504110_130505267_130505475_130506394
ENSMUST00000089645.13	chr6	-	1725	8	FSM	ENSMUSG00000068329.13	ENSMUST00000089645.13	1725	8	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_7	63.5991913695225	2338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTTGGATCTTCTCC	1897	False	NA	2	True	AATAAA	-31	NA	83031552	83028246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593_83030799_83030901
ENSMUST00000089651.6	chr6	-	1807	5	FSM	ENSMUSG00000068335.7	ENSMUST00000089651.6	1807	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	5.31507290636732	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTCTGCGTATGAATGAG	NA	False	NA	-4	True	ATTAAA	-19	NA	83010452	83007914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83009042_83009211_83009397_83009515_83009610_83009747_83010048_83010351
ENSMUST00000089680.10	chr15	-	973	8	FSM	ENSMUSG00000055762.17	ENSMUST00000089680.10	973	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	1574.61569007443	3059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCCGCCTCTTGTGTTAC	NA	False	NA	-8	True	ATTAAA	-14	NA	75781168	75767338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75769074_75769132_75772980_75773102_75781093
ENSMUST00000089765.9	chr15	+	871	3	FSM	ENSMUSG00000068391.9	ENSMUST00000089765.9	871	3	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_2	8	1896	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGCTTCATTGAAGTGG	NA	False	NA	7	True	ATTAAA	-18	NA	72962240	72965924	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_72962433_72964681_72964809_72965372
ENSMUST00000089950.11	chr3	-	1381	9	FSM	ENSMUSG00000038975.15	ENSMUST00000089950.11	1381	9	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_5	268.62508724987	7350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6100	False	NA	-2	True	AATAAA	-15	NA	153618646	153612925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618570
ENSMUST00000089968.13	chr17	+	1991	6	FSM	ENSMUSG00000036036.16	ENSMUST00000089968.13	1991	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1202.47155475712	2939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37312054	37321524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_37312233_37313343_37313670_37314177_37314208_37315688_37315796_37316950_37317087_37320310
ENSMUST00000090002.10	chr6	-	1662	12	FSM	ENSMUSG00000004980.17	ENSMUST00000090002.10	1662	12	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_2	2567.02803044511	4333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACTTGGTGTAATGCT	NA	False	NA	-24	True	AATAAA	-14	NA	51446825	51438103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUST00000090023.13	chr16	+	2080	11	FSM	ENSMUSG00000022841.16	ENSMUST00000090023.13	2080	11	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_4	799.773617969485	4467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTTTGGGTCTTG	1353	False	NA	17	True	NA	NA	NA	20354227	20362806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359724_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
ENSMUST00000090031.12	chr3	+	593	3	FSM	ENSMUSG00000068523.13	ENSMUST00000090031.12	593	3	0	0	0	0	multi-exon	FALSE	canonical	3	3573	junction_2	41.5	30053	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTGGGTACTAATCTTT	NA	False	NA	26	True	AATAAA	-39	NA	146205561	146211327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_146205776_146209014_146209155_146211088
ENSMUST00000090042.12	chr2	-	2874	20	FSM	ENSMUSG00000033808.17	ENSMUST00000090042.12	2874	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	102.185508348021	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	TATAAA	-14	NA	120234550	120185792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204391_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ENSMUST00000090192.12	chr16	-	2609	4	FSM	ENSMUSG00000038965.18	ENSMUST00000090192.12	2609	4	0	0	0	0	multi-exon	FALSE	canonical	3	1494	junction_3	290.114153777823	14027	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGGGTGTATGGGTTTCT	NA	False	NA	-1	True	AATAAA	-18	NA	17019356	16969878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_16972147_16977853_16978041_16994275_16994372_17019298
ENSMUST00000090414.11	chr7	-	2221	13	FSM	ENSMUSG00000031027.16	ENSMUST00000090414.11	2221	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	21.6042369815635	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCAGTCCCTCACGTGT	NA	False	NA	-14	True	AATAAA	-26	NA	109038288	108878429	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108939575_108939687_108940495_108940847_109038123
ENSMUST00000090476.10	chr3	-	809	6	FSM	ENSMUSG00000038543.14	ENSMUST00000090476.10	809	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	2.22710574513201	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCCTACTTCTTAATGA	NA	False	NA	NA	False	NA	NA	NA	95799317	95791265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95791550_95792281_95792384_95795452_95795609_95796168_95796228_95797034_95797122_95799196
ENSMUST00000090546.6	chr3	-	2864	3	FSM	ENSMUSG00000068732.6	ENSMUST00000090546.6	2864	3	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	15	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGCCTGCTTTGTCAT	5274	False	NA	-14	True	AATAAA	-15	NA	108469782	108463740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_108466277_108467502_108467635_108469586
ENSMUST00000090561.10	chr3	+	1686	8	FSM	ENSMUSG00000068744.13	ENSMUST00000090561.10	1686	8	0	0	0	0	multi-exon	FALSE	canonical	3	329	junction_1	57.4402973103556	1758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATCTGAAAGTAGATTTT	7032	False	NA	16	True	AATAAA	-24	NA	108291154	108295495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_108291243_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
ENSMUST00000090608.6	chr2	+	2308	3	FSM	ENSMUSG00000027243.9	ENSMUST00000090608.6	2308	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	26	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3442	False	NA	NA	False	NA	NA	NA	91541266	91551890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_91541597_91542424_91543211_91550698
ENSMUST00000090678.11	chr3	-	2407	8	FSM	ENSMUSG00000068798.11	ENSMUST00000090678.11	2407	8	0	0	0	0	multi-exon	TRUE	canonical	3	409	junction_7	23.7667234354495	1599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTCCCTTCTCTTTAT	NA	False	NA	-18	True	AATAAA	-12	NA	105708652	105634582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_105636281_105639271_105639388_105645070_105645215_105646829_105646971_105648661_105648719_105653219_105653289_105657560_105657645_105708554
ENSMUST00000090682.4	chr2	+	2437	4	FSM	ENSMUSG00000005505.13	ENSMUST00000090682.4	2437	4	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	4.10960933531265	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTCTGTGTTGACT	2338	False	NA	NA	False	AATAAA	-42	NA	90735086	90740905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_90735254_90736009_90736628_90737888_90737996_90739360
ENSMUST00000090749.13	chr11	+	746	5	FSM	ENSMUSG00000071866.13	ENSMUST00000090749.13	746	5	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_1	16065.018555467	94844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCCTTGTTTGTATTGG	NA	False	NA	0	True	AATAAA	-17	NA	6365869	6369815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_6365985_6368100_6368132_6368225_6368315_6369112_6369286_6369477
ENSMUST00000090759.5	chr3	+	1754	10	FSM	ENSMUSG00000028093.16	ENSMUST00000090759.5	1754	10	0	0	0	0	multi-exon	FALSE	canonical	3	1030	junction_1	83.6891662236509	8441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTTTGCCTGTGTGT	NA	False	NA	11	True	NA	NA	NA	97066092	97083890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075302_97075391_97075756_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
ENSMUST00000090797.11	chr3	+	1511	16	FSM	ENSMUSG00000028109.15	ENSMUST00000090797.11	1511	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_15	121.749177501214	736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCACTGAATACAACCTGC	NA	False	NA	NA	False	AATACA	-22	NA	95466987	95494982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95467035_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95492845_95492901_95494691
ENSMUST00000090811.11	chr2	+	3309	8	FSM	ENSMUSG00000008226.15	ENSMUST00000090811.11	3309	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_5	26.8791702981764	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTTGATCTTTGATAAA	NA	False	NA	NA	False	AATAAA	-30	NA	73142944	73168162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646_73149844_73152328_73152539_73160106_73160270_73161326_73161502_73166054
ENSMUST00000090827.12	chr11	-	2419	8	FSM	ENSMUSG00000038208.14	ENSMUST00000090827.12	2419	8	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_7	8.7084289452161	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGACTCTGCTACTCTAT	NA	False	NA	NA	False	AATAAA	-21	NA	98291316	98279502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_98280928_98281112_98281318_98281502_98281640_98281905_98281968_98282520_98282584_98288721_98288875_98289710_98289809_98291040
ENSMUST00000090839.12	chr3	+	1712	12	FSM	ENSMUSG00000068874.14	ENSMUST00000090839.12	1712	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	7.58314791042644	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGATCACTCTGTGACG	2654	False	NA	NA	False	AATAAA	-14	NA	94840366	94852069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_94840474_94844007_94844065_94844205_94844319_94844518_94844705_94845265_94845387_94846956_94847140_94847358_94847538_94849774_94849854_94849935_94850058_94851149_94851243_94851385_94851505_94851716
ENSMUST00000090852.11	chr2	+	2001	12	FSM	ENSMUSG00000068882.14	ENSMUST00000090852.11	2001	12	0	0	0	0	multi-exon	FALSE	canonical	3	1543	junction_7	118.150135613357	12728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGCCAAACATT	NA	False	NA	-38	True	NA	NA	NA	69691905	69702130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ENSMUST00000090976.10	chr2	-	1153	7	FSM	ENSMUSG00000026761.13	ENSMUST00000090976.10	1153	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	170.808290847436	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGACAGACTTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	48839246	48821969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_48822610_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
ENSMUST00000091020.10	chr2	-	1838	8	FSM	ENSMUSG00000035949.16	ENSMUST00000091020.10	1838	8	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_6	107.582336764329	546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTTGTTCTTTGAAATT	9196	False	NA	-4	True	ATTAAA	-14	NA	34716247	34695350	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34712988_34715973_34716083_34716183
ENSMUST00000091031.6	chr15	-	435	1	FSM	ENSMUSG00000068964.6	ENSMUST00000091031.6	435	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTTTAGTGGATCTCAAA	6666	False	NA	NA	False	AAGAAA	-45	NA	31446963	31446528	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_31446500_31447000
ENSMUST00000091087.13	chr9	+	3450	20	FSM	ENSMUSG00000033335.18	ENSMUST00000091087.13	3450	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	221.967630092463	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTACTGGTGGCTACGTG	5905	False	NA	6	True	AATAAA	-16	NA	21336266	21418422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21390194_21390334_21392628_21392716_21396946_21397018_21401038_21401091_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
ENSMUST00000091142.4	chr2	+	2196	5	FSM	ENSMUSG00000069020.10	ENSMUST00000091142.4	2196	5	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	41.2158949921023	2895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTGTTGTTGTTGTT	NA	False	NA	14	True	AATAAA	-24	NA	29717353	29735014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29717448_29722703_29722775_29731413_29731496_29732732_29732782_29733114
ENSMUST00000091144.11	chr3	-	2366	6	FSM	ENSMUSG00000037174.19	ENSMUST00000091144.11	2366	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	93.6047007366617	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACCTAGCACAGTATTGT	NA	False	NA	NA	False	ATTAAA	-20	NA	51184836	51163083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51172289_51172464_51174173_51174288_51184625
ENSMUST00000091288.13	chr2	+	2184	3	FSM	ENSMUSG00000079037.10	ENSMUST00000091288.13	2184	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	0.5	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGCGGGGTTTGTTCT	NA	False	NA	7	True	ATTAAA	-17	NA	131751847	131780349	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_131751924_131754114_131754213_131778339
ENSMUST00000091295.14	chr13	-	2140	8	FSM	ENSMUSG00000041431.17	ENSMUST00000091295.14	2140	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	1285.22781272903	1868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATTTGCCCTTTTGACTG	NA	False	NA	-6	True	AATAAA	-28	NA	100922994	100915239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100921964_100922127_100922240_100922412_100922889
ENSMUST00000091299.8	chr13	-	1988	12	FSM	ENSMUSG00000069089.9	ENSMUST00000091299.8	1988	12	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_3	44.8636133370117	6554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTGTTTATGGACTATT	NA	False	NA	NA	False	CATAAA	-17	NA	100867447	100839138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
ENSMUST00000091354.12	chr3	-	2193	6	FSM	ENSMUSG00000027506.16	ENSMUST00000091354.12	2193	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1287.01132862147	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATAGGTTTCAATATTTA	NA	False	NA	-28	True	AATAAA	-15	NA	9029106	8994657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9028906
ENSMUST00000091374.9	chr1	-	1215	5	FSM	ENSMUSG00000026021.16	ENSMUST00000091374.9	1215	5	0	0	0	0	multi-exon	FALSE	canonical	3	3231	junction_1	432.6531520745	13381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGCTCCTTTTATTTTA	589	False	NA	0	True	AATAAA	-21	NA	59709993	59678592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_59679428_59681576_59681649_59683675_59683754_59694616_59694692_59709838
ENSMUST00000091429.12	chr2	-	871	6	FSM	ENSMUSG00000063275.16	ENSMUST00000091429.12	871	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	43.3340512761039	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTGCATTGTTTCTTGA	NA	False	NA	-2	True	AATAAA	-19	NA	14060831	14031641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_14031818_14040589_14040769_14049593_14049683_14049758_14049778_14049948_14050067_14060541
ENSMUST00000091579.6	chr13	-	1523	12	FSM	ENSMUSG00000021552.8	ENSMUST00000091579.6	1523	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	54.7743681383791	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTGATCTTCACTGTC	NA	False	NA	2	True	AATAAA	-22	NA	58422002	58381159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_58381473_58384330_58384409_58384800_58384872_58386462_58386527_58389467_58389570_58391615_58391769_58398944_58398968_58403560_58403685_58407247_58407326_58411011_58411156_58411755_58412014_58421887
ENSMUST00000091641.13	chr13	+	1785	9	FSM	ENSMUSG00000021431.16	ENSMUST00000091641.13	1785	9	0	0	0	0	multi-exon	FALSE	canonical	1	67	junction_6	66.7082032062025	1069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGAAGTGCTGTGTG	NA	False	NA	25	True	ATTAAA	-26	NA	38388920	38411641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38400300_38400490_38401349_38401472_38404663_38404753_38405210_38405370_38410849
ENSMUST00000091798.10	chr18	+	1989	6	FSM	ENSMUSG00000034006.18	ENSMUST00000091798.10	1989	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	14.1279864099595	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGGTGTAAGTAAGTCAG	NA	False	NA	14	True	AATAAA	-14	NA	80299520	80335939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_80299619_80299996_80300334_80306634_80306769_80315676_80315731_80326490_80326708_80334790
ENSMUST00000091878.6	chr4	+	2798	4	FSM	ENSMUSG00000066009.9	ENSMUST00000091878.6	2798	4	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_2	56.5115524079418	1414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	146033914	146063191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726
ENSMUST00000091924.10	chr3	-	1427	8	FSM	ENSMUSG00000028104.15	ENSMUST00000091924.10	1427	8	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_6	13.8534604827436	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTCTAACAGAGTGATGT	NA	False	NA	0	True	NA	NA	NA	96501497	96485187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_96485905_96487113_96487228_96487331_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96489403_96489572_96501399
ENSMUST00000091925.6	chr18	+	438	1	FSM	ENSMUSG00000096699.2	ENSMUST00000091925.6	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2779	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	NA	False	NA	NA	False	NA	NA	NA	42385462	42385900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_42385500_42385900
ENSMUST00000092033.4	chr10	-	1481	13	FSM	ENSMUSG00000040043.18	ENSMUST00000092033.4	1481	13	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_9	21.4048281157936	1218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGCAGTGCTGTGAAGTC	NA	False	NA	NA	False	TTTAAA	-14	NA	128012348	127968975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128012218
ENSMUST00000092041.11	chr18	-	2911	10	FSM	ENSMUSG00000037013.18	ENSMUST00000092041.11	2911	10	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_3	115.228382991837	1319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCTCATTTGTTTCTT	NA	False	NA	-21	True	AATAAA	-15	NA	14815885	14758687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ENSMUST00000092170.7	chr10	-	3012	7	FSM	ENSMUSG00000069520.7	ENSMUST00000092170.7	3012	7	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_6	17.9017379665278	911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198172	115176646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197956
ENSMUST00000092305.6	chr10	+	1994	12	FSM	ENSMUSG00000069565.13	ENSMUST00000092305.6	1994	12	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_4	263.9061002555	954	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGTGCTGTCTGCTTGT	NA	False	NA	12	True	AATAAA	-21	NA	80100907	80124242	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113405_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120384_80121083_80121261_80123372
ENSMUST00000092404.13	chr11	-	1899	3	FSM	ENSMUSG00000034120.19	ENSMUST00000092404.13	1899	3	0	0	0	0	multi-exon	FALSE	canonical	3	1775	junction_2	41.5	1266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCCTGGTCTTTTGTTT	6003	False	NA	-5	True	ATTAAA	-31	NA	116743920	116740726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116741788_116742846_116743158_116743393
ENSMUST00000092425.11	chr11	+	737	6	FSM	ENSMUSG00000017404.13	ENSMUST00000092425.11	737	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	6391.5163271324	24120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917535	97921318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_97917589_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
ENSMUST00000092473.5	chr10	-	2712	9	FSM	ENSMUSG00000020078.17	ENSMUST00000092473.5	2712	9	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	336.090552344156	1587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTGTCATTACAGCAT	5405	False	NA	-5	True	AATAAA	-15	NA	62322377	62291013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322156
ENSMUST00000092559.13	chr11	+	2083	10	FSM	ENSMUSG00000056938.17	ENSMUST00000092559.13	2083	10	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	33.6455746177417	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	6	True	ATTAAA	-16	NA	102992507	103003026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_102992615_102993507_102993923_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
ENSMUST00000092567.11	chr11	-	1890	3	FSM	ENSMUSG00000034520.15	ENSMUST00000092567.11	1890	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	376	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTTAAAGGGTAATGT	NA	False	NA	-8	True	ATTAAA	-22	NA	102710526	102690404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102692022_102693666_102693743_102710329
ENSMUST00000092614.9	chr6	+	866	9	FSM	ENSMUSG00000069678.11	ENSMUST00000092614.9	866	9	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	14.5408906192159	1309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCACTTTTCATCTTC	150	False	NA	16	True	AATAAA	-8	NA	83055370	83057828	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83055460_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
ENSMUST00000092620.6	chr10	-	635	1	FSM	ENSMUSG00000069682.7	ENSMUST00000092620.6	635	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	353987	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAAATCAATAGAC	NA	False	NA	-8	True	AATAAA	-21	NA	29575376	29574741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_29574700_29575400
ENSMUST00000092648.13	chr6	-	2115	18	FSM	ENSMUSG00000029687.17	ENSMUST00000092648.13	2115	18	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_6	137.340256373582	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTACTACCTCTTCCCCT	8678	False	NA	NA	False	NA	NA	NA	47554594	47507474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477
ENSMUST00000092674.14	chr10	+	2625	5	FSM	ENSMUSG00000019977.17	ENSMUST00000092674.14	2625	5	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_4	452.231688407613	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGCATGTTATTTAAAT	NA	False	NA	NA	False	AATAAA	-24	NA	21171936	21187108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21184997
ENSMUST00000092688.12	chr11	-	1399	9	FSM	ENSMUSG00000017176.18	ENSMUST00000092688.12	1399	9	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_8	92.107868149252	2764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACGCGTCTTTAATCCC	NA	False	NA	-2	True	ATTAAA	-19	NA	100331915	100320178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654_100331754_100331869
ENSMUST00000092689.9	chr11	-	1344	8	FSM	ENSMUSG00000017176.18	ENSMUST00000092689.9	1344	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	183.081112836772	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGCACGCGTCTTTAAT	NA	False	NA	-5	True	ATTAAA	-16	NA	100331846	100320181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331753
ENSMUST00000092720.4	chr5	-	3341	4	FSM	ENSMUSG00000072763.3	ENSMUST00000092720.4	3341	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	21.5148527508066	480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCATGGTCATGGTATC	6131	False	NA	-3	True	NA	NA	NA	109838907	109822410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_109825258_109826379_109826441_109826628_109826756_109838601
ENSMUST00000092888.11	chr13	-	1479	7	FSM	ENSMUSG00000069805.11	ENSMUST00000092888.11	1479	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	4.93288286231625	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTCTTTAGTGCGTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	63036096	63012566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_63012982_63015152_63015273_63016795_63016934_63018979_63019121_63020503_63020597_63022962_63023126_63035687
ENSMUST00000092969.2	chr11	+	800	7	FSM	ENSMUSG00000069835.11	ENSMUST00000092969.2	800	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.7938424357067	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGCAGCCATTTTGAAG	NA	False	NA	NA	False	AATAAA	-34	NA	69512877	69514696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69512942_69513081_69513159_69513318_69513371_69513532_69513617_69513685_69513788_69513937_69513979_69514316
ENSMUST00000092996.5	chr11	+	2412	6	FSM	ENSMUSG00000069844.13	ENSMUST00000092996.5	2412	6	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	26.3469163281019	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTACATGAAGCCTAATGAA	NA	False	NA	14	True	AATAAA	-32	NA	66943495	66956398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_66943743_66944600_66944692_66946556_66946755_66947340_66947434_66949152_66949269_66954731
ENSMUST00000093039.6	chr8	-	2912	5	FSM	ENSMUSG00000038697.16	ENSMUST00000093039.6	2912	5	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_4	121.207208944023	223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATGTGTGGCATCT	4094	False	NA	36	True	ATTAAA	-15	NA	124747747	124723056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_124724846_124729715_124730441_124734929_124735035_124736427_124736573_124747599
ENSMUST00000093040.13	chr7	-	1192	8	FSM	ENSMUSG00000053291.16	ENSMUST00000093040.13	1192	8	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_1	28.7402157263998	2854	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGGCCTCTGTCATTCTG	NA	False	NA	-1	True	CATAAA	-19	NA	26878321	26867848	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875319_26875582_26875664_26878151
ENSMUST00000093043.7	chr8	+	1681	11	FSM	ENSMUSG00000040220.11	ENSMUST00000093043.7	1681	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	6.18789140176199	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCTGTCGTTGTGAGG	NA	False	NA	7	True	AATGAA	-21	NA	124245572	124263389	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_124245692_124247342_124247430_124249676_124249875_124250816_124251024_124252357_124252413_124253203_124253410_124254650_124254819_124255116_124255204_124257565_124257776_124259991_124260058_124263111
ENSMUST00000093061.7	chr11	+	2251	6	FSM	ENSMUSG00000020455.17	ENSMUST00000093061.7	2251	6	0	0	0	0	multi-exon	FALSE	canonical	2	58	junction_2	16.6781293915115	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCTCTGCTTATCCTGT	1689	False	NA	14	True	AATAAA	-14	NA	58868941	58882283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_58869471_58872066_58872163_58872818_58873050_58879550_58879574_58879654_58879756_58881012
ENSMUST00000093078.13	chr8	+	2289	13	FSM	ENSMUSG00000025316.17	ENSMUST00000093078.13	2289	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	55.5245191084283	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCAGTGTTGTTG	NA	False	NA	7	True	AATAAA	-15	NA	122677230	122752916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
ENSMUST00000093107.12	chr11	+	2263	16	FSM	ENSMUSG00000018906.15	ENSMUST00000093107.12	2263	16	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_12	14.6945190084225	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAATAGCCTTATTTT	NA	False	NA	15	True	AATAAA	-17	NA	53991749	54022478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001909_54002248_54002401_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017063_54017124_54019873_54019943_54020291_54020389_54022015
ENSMUST00000093120.13	chr8	-	2131	15	FSM	ENSMUSG00000031948.15	ENSMUST00000093120.13	2131	15	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_14	463.92143951408	1860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737898	112720074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112737841
ENSMUST00000093132.13	chr11	+	1949	13	FSM	ENSMUSG00000020385.17	ENSMUST00000093132.13	1949	13	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	48.5840480221875	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153940	51172591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_51154097_51157997_51158159_51162626_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
ENSMUST00000093140.5	chr11	+	962	3	FSM	ENSMUSG00000025135.13	ENSMUST00000093140.5	962	3	0	0	0	0	multi-exon	FALSE	canonical	3	1006	junction_1	419	8391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCAAAACCTTCATCGTA	4011	False	NA	129	True	AATAAA	-17	NA	120489357	120496602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120489697_120490067_120490195_120496106
ENSMUST00000093169.3	chr11	-	958	1	FSM	ENSMUSG00000069899.4	ENSMUST00000093169.3	958	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2709	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGACAGAGAGAGAGAGAA	1797	False	NA	NA	False	AATAAA	-30	NA	45943138	45942180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_45942200_45943100
ENSMUST00000093195.7	chr8	+	1265	3	FSM	ENSMUSG00000005699.17	ENSMUST00000093195.7	1265	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5.5	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATGTGGTCCTTCTGTGT	NA	False	NA	10	True	ATTAAA	-16	NA	106428278	106430124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106428436_106428805_106429029_106429239
ENSMUST00000093201.13	chr11	-	1192	10	FSM	ENSMUSG00000057113.14	ENSMUST00000093201.13	1192	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	6125.12875954356	4471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	-32	True	AATAAA	-21	NA	33113072	33102509	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUST00000093234.5	chr8	-	639	5	FSM	ENSMUSG00000031879.15	ENSMUST00000093234.5	639	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	369.363641957353	5775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCAGTATGCCTTAGCG	NA	False	NA	-10	True	AATAAA	-18	NA	105368333	105366479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_105366719_105367151_105367198_105367599_105367721_105367942_105368023_105368180
ENSMUST00000093336.8	chr16	-	1266	8	FSM	ENSMUSG00000049916.13	ENSMUST00000093336.8	1266	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_7	117.062516003464	1437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	16942970	16931261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16941375_16941519_16942853
ENSMUST00000093346.6	chr11	-	519	4	FSM	ENSMUSG00000041126.17	ENSMUST00000093346.6	519	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_2	1363.86957669061	2537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTGTCTCAGTATTTC	NA	False	NA	-3	True	GATAAA	-16	NA	6394352	6378137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6378433_6379095_6379226_6389375_6389454_6394336
ENSMUST00000093350.10	chr11	+	4075	24	FSM	ENSMUSG00000020456.18	ENSMUST00000093350.10	4075	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	222.742486968574	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTTTGCATTGCATCGG	NA	False	NA	-36	True	AAAAAG	-19	NA	6241667	6306592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_6241694_6246951_6247200_6263787_6263980_6266764_6266856_6274877_6274923_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
ENSMUST00000093357.12	chr8	-	1238	9	FSM	ENSMUSG00000005150.17	ENSMUST00000093357.12	1238	9	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_6	13.3410784796432	1422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTAGTCTTCATTCTT	NA	False	NA	-2	True	AATAAA	-35	NA	85807375	85801663	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_85801973_85802451_85802567_85802652_85802762_85802845_85802914_85806209_85806337_85806417_85806467_85806748_85806855_85806941_85807063_85807141
ENSMUST00000093454.8	chr8	+	3072	12	FSM	ENSMUSG00000070002.8	ENSMUST00000093454.8	3072	12	0	0	0	0	multi-exon	TRUE	canonical	3	95	junction_2	19.7818683154445	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCTGTGGTTTGAGTAT	NA	False	NA	8	True	AATAAA	-16	NA	70992337	71045508	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70992492_71025512_71025561_71031486_71031609_71031742_71031907_71034204_71034471_71036521_71036647_71037806_71037886_71038203_71038679_71043169_71043231_71043343_71043516_71044019_71044065_71044147
ENSMUST00000093456.12	chr8	-	1216	5	FSM	ENSMUSG00000055553.17	ENSMUST00000093456.12	1216	5	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_4	146.224784150978	3165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTATAGCAACAGTGGCT	NA	False	NA	-13	True	AATAAA	-20	NA	70975830	70966045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70966819_70968044_70968092_70971014_70971168_70972586_70972712_70975712
ENSMUST00000093470.7	chr8	+	1396	2	FSM	ENSMUSG00000051147.11	ENSMUST00000093470.7	1396	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCAAAGTGGTATATTGA	NA	False	NA	NA	False	AATAAA	-25	NA	67947509	67955236	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_67947555_67953885
ENSMUST00000093517.7	chr8	+	1520	7	FSM	ENSMUSG00000031628.10	ENSMUST00000093517.7	1520	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	80.3189821205977	955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTTTATTACTGGAAC	NA	False	NA	NA	False	TTTAAA	-9	NA	47070429	47091752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_47070532_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
ENSMUST00000093658.3	chr19	-	148	1	FSM	ENSMUSG00000070167.3	ENSMUST00000093658.3	148	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1321	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCGTGCAGAAATGTAGCT	NA	False	NA	-9	True	NA	NA	NA	8866049	8865901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_8865900_8866000
ENSMUST00000093795.10	chr9	+	2606	18	FSM	ENSMUSG00000056267.15	ENSMUST00000093795.10	2606	18	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_10	72.0150887688172	797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	18	True	AATAAA	-23	NA	99125494	99182457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
ENSMUST00000093901.12	chr11	-	2770	13	FSM	ENSMUSG00000025377.15	ENSMUST00000093901.12	2770	13	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_11	8.42944574426786	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCCACTTGGGCTGGT	NA	False	NA	-8	True	AATAAA	-16	NA	119989557	119981356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_119982839_119983676_119983812_119984070_119984150_119984242_119984357_119984516_119984692_119984939_119985144_119986169_119986242_119986359_119986436_119986629_119986698_119987406_119987501_119987703_119987796_119988334_119988408_119989451
ENSMUST00000093943.10	chr11	+	1251	6	FSM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	266.87570140423	665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATCTGTCTTTTGGTGGGG	NA	False	NA	NA	False	ATTAAA	-15	NA	96679984	96699466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441_96697591_96699009
ENSMUST00000093955.12	chr11	+	706	5	FSM	ENSMUSG00000020485.15	ENSMUST00000093955.12	706	5	0	0	0	0	multi-exon	FALSE	canonical	3	512	junction_3	25.7972866790289	6388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAGGGTACTGAGGCCT	NA	False	NA	2	True	AATAAA	-19	NA	87628377	87634443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_87628495_87628992_87629100_87633621_87633678_87633883_87633938_87634071
ENSMUST00000094014.10	chr11	+	2130	5	FSM	ENSMUSG00000069808.14	ENSMUST00000094014.10	2130	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	6.18465843842649	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTATGTGCCCTGGCG	3406	False	NA	NA	False	ATTAAA	-17	NA	76092840	76100242	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_76093082_76093377_76093462_76096079_76096282_76097953_76098050_76098735
ENSMUST00000094028.10	chr3	-	3193	10	FSM	ENSMUSG00000070372.12	ENSMUST00000094028.10	3193	10	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_2	396.900211360208	818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTCCTTCCTGAGTGTGA	9173	False	NA	NA	False	AGTAAA	-22	NA	104771821	104730094	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104771655
ENSMUST00000094051.6	chr14	+	1647	1	FSM	ENSMUSG00000049235.9	ENSMUST00000094051.6	1647	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2813	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGGAAGAGAAAGTGGTT	NA	False	NA	NA	False	NA	NA	NA	43951188	43952835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_43951200_43952800
ENSMUST00000094065.5	chr11	+	492	4	FSM	ENSMUSG00000070394.11	ENSMUST00000094065.5	492	4	0	0	0	0	multi-exon	FALSE	canonical	3	1210	junction_1	145.470119115767	17369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGTCTTTATTCATC	NA	False	NA	NA	False	ATTAAA	-21	NA	69729349	69730444	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69729476_69729745_69729778_69730013_69730095_69730191
ENSMUST00000094081.5	chr11	+	1263	4	FSM	ENSMUSG00000020895.15	ENSMUST00000094081.5	1263	4	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_2	22.0655588845805	1619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGCAAATAGATATTATTC	4652	False	NA	NA	False	AATAAA	-14	NA	68961636	68964119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248
ENSMUST00000094154.6	chr7	-	2215	5	FSM	ENSMUSG00000070436.13	ENSMUST00000094154.6	2215	5	0	0	0	0	multi-exon	FALSE	canonical	3	1409	junction_4	114.233313879971	2987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTCTTTCTAAGACAAAG	NA	False	NA	90	True	ATTAAA	-17	NA	99002446	98994595	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
ENSMUST00000094245.4	chr5	+	1259	1	FSM	ENSMUSG00000070473.5	ENSMUST00000094245.4	1259	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGCTGGAGCTTCCTTAT	5041	False	NA	38	True	AATAAA	-18	NA	135015067	135016326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_135015100_135016300
ENSMUST00000094280.4	chr5	-	915	4	FSM	ENSMUSG00000070493.4	ENSMUST00000094280.4	915	4	0	0	0	0	multi-exon	FALSE	canonical	3	5311	junction_3	452.984424554409	106700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTAGCGTCCTTATTGT	2064	False	NA	-3	True	AATAAA	-18	NA	129916311	129909996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_129910238_129911269_129911421_129912774_129913025_129916038
ENSMUST00000094291.3	chr12	-	461	2	FSM	ENSMUSG00000034892.9	ENSMUST00000094291.3	461	2	0	0	0	0	multi-exon	FALSE	canonical	3	25458	junction_1	0	4525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTCAAAAGTCTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	69205828	69205131	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_69205535_69205770
ENSMUST00000094344.6	chr2	+	459	2	FSM	ENSMUSG00000070529.8	ENSMUST00000094344.6	459	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACTCTTAATAATCACTG	-7	True	NA	NA	False	AATAAA	-22	NA	164497965	164499288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_164498119_164498982
ENSMUST00000094357.11	chr5	+	1366	11	FSM	ENSMUSG00000029452.19	ENSMUST00000094357.11	1366	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4.13400532171888	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAAATCTCAGGTTC	NA	False	NA	NA	False	NA	NA	NA	121601214	121633457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_121601334_121601849_121601897_121602861_121602926_121605916_121606049_121620395_121620501_121625812_121625863_121627310_121627395_121629138_121629278_121631693_121631839_121632266_121632341_121633050
ENSMUST00000094361.11	chr12	-	3281	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	0	0	0	0	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	59661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGATTGGGTTGTA	NA	False	NA	NA	False	NA	NA	NA	110662829	110657038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
ENSMUST00000094434.13	chr7	-	968	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	0	0	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	7359.57672393974	147551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109308	45107367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
ENSMUST00000094469.6	chr11	+	707	5	FSM	ENSMUSG00000075702.11	ENSMUST00000094469.6	707	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_4	6.04152298679729	773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGAGTCTCTTCTTATTT	NA	False	NA	22	True	ACTAAA	-14	NA	3464866	3467351	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_3465074_3466260_3466297_3466485_3466521_3466841_3466921_3467001
ENSMUST00000094477.4	chr1	-	1809	14	FSM	ENSMUSG00000006010.15	ENSMUST00000094477.4	1809	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	45.878537865612	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTTTA	970	False	NA	NA	False	NA	NA	NA	150268494	150238284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_150238640_150239241_150239350_150247779_150247951_150250529_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268354
ENSMUST00000094544.3	chr4	-	905	2	FSM	ENSMUSG00000070637.3	ENSMUST00000094544.3	905	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGAAGGGAGTCTGACCTTG	NA	False	NA	NA	False	AATAAA	-29	NA	141163416	141159982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_141160768_141163296
ENSMUST00000094578.11	chr5	-	4228	28	FSM	ENSMUSG00000035325.17	ENSMUST00000094578.11	4228	28	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_6	223.785378761883	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	8108	False	NA	-7	True	ATTAAA	-19	NA	100564093	100509507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100517454_100517494_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
ENSMUST00000094632.6	chr7	+	1868	16	FSM	ENSMUSG00000070699.6	ENSMUST00000094632.6	1868	16	0	0	0	0	multi-exon	TRUE	canonical	3	180	junction_5	21.0516824347446	340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACAGGAAGTGCTGGCTG	278	False	NA	25	True	AATAAA	-33	NA	28441426	28453296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28441708_28443666_28443763_28445876_28445907_28446165_28446307_28446383_28446439_28446911_28446976_28447256_28447363_28448379_28448428_28449001_28449111_28449305_28449352_28449435_28449524_28449606_28449717_28451666_28451761_28451850_28451944_28452027_28452094_28452855
ENSMUST00000094657.10	chr4	+	1401	9	FSM	ENSMUSG00000054405.15	ENSMUST00000094657.10	1401	9	0	0	0	0	multi-exon	TRUE	canonical	3	2684	junction_8	233.065676097962	18649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGTCTCCTCCTCGGGT	2331	False	NA	19	True	AATAAA	-19	NA	132262860	132281053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
ENSMUST00000094693.11	chr12	+	1527	8	FSM	ENSMUSG00000021134.18	ENSMUST00000094693.11	1527	8	0	0	0	0	multi-exon	FALSE	canonical	3	1278	junction_1	232.390680904869	23056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTCTGTTTCTCTCAA	NA	False	NA	NA	False	AATAAA	-23	NA	80992277	80997281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
ENSMUST00000094695.12	chr2	-	2249	13	FSM	ENSMUSG00000070730.12	ENSMUST00000094695.12	2249	13	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_12	29.1989107483291	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTTTGACTGTTTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	118987515	118967481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_118968234_118968827_118968909_118969519_118969574_118969832_118969932_118970524_118970603_118970740_118970817_118973108_118973170_118976818_118976922_118977789_118978076_118983856_118984001_118984370_118984564_118986838_118987033_118987387
ENSMUST00000094712.5	chr4	+	1120	3	FSM	ENSMUSG00000070737.11	ENSMUST00000094712.5	1120	3	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_2	3.5	784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTACTTCGTCCACT	NA	False	NA	7	True	TTTAAA	-4	NA	127019838	127023437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_127019987_127021611_127021793_127022646
ENSMUST00000094760.9	chr4	-	1859	12	FSM	ENSMUSG00000073758.11	ENSMUST00000094760.9	1859	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	4.41260403618604	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCAGTCTGGTCCTTGTGG	2003	False	NA	0	True	AGTAAA	-21	NA	126056419	126044394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_126044590_126044669_126044728_126044809_126045667_126045816_126045912_126045998_126046052_126046133_126046228_126054260_126054304_126055127_126055215_126055315_126055417_126055527_126055574_126055760_126055817_126056245
ENSMUST00000094815.5	chr7	+	1875	9	Antisense	novelGene_ENSMUSG00000052833.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6578	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACCGCCAGCAGCGAGTC	NA	False	NA	NA	False	NA	NA	NA	16060974	16121710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr7_+_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
ENSMUST00000094835.9	chr2	-	1498	8	FSM	ENSMUSG00000040591.19	ENSMUST00000094835.9	1498	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	33.6470273423908	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAATGAGTCTAAAGCCAG	NA	False	NA	-7	True	AATAAA	-18	NA	91275025	91108588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_91109303_91109534_91109599_91112090_91112201_91112809_91113006_91114579_91114666_91135093_91135179_91214073_91214205_91274913
ENSMUST00000094870.3	chr7	-	1897	3	FSM	ENSMUSG00000046792.9	ENSMUST00000094870.3	1897	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	59	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCACTGCCTGTTTCTTGA	9626	False	NA	-1	True	AATAAA	-20	NA	6158970	6134489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_6136171_6146060_6146150_6158843
ENSMUST00000094897.5	chr7	-	2224	12	FSM	ENSMUSG00000055809.8	ENSMUST00000094897.5	2224	12	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_9	6.85022772137618	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGGTCTCCAGTGCCAAGA	NA	False	NA	1	True	AATAAA	-35	NA	4535452	4525931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4526859_4526936_4527012_4527142_4527255_4529412_4529531_4529865_4529989_4530092_4530219_4530440_4530624_4530951_4531110_4533772_4533867_4534736_4534880_4535185_4535275_4535376
ENSMUST00000094917.10	chr1	-	1869	13	FSM	ENSMUSG00000038079.15	ENSMUST00000094917.10	1869	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	71.220851737551	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATTAACTGAAGGTTT	4052	False	NA	-10	True	AATAAA	-24	NA	59159253	59139748	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59156489_59156501_59157133_59157166_59159110
ENSMUST00000095017.11	chr5	-	3498	17	FSM	ENSMUSG00000042508.17	ENSMUST00000095017.11	3498	17	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_5	37.579706957346	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGATTTTGAGCCATGCA	NA	False	NA	-5	True	AATAAA	-20	NA	9211749	9168871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
ENSMUST00000095063.11	chr4	-	3237	5	FSM	ENSMUSG00000038544.15	ENSMUST00000095063.11	3237	5	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_4	41.7814252988095	670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTACTGCATATGTTAA	-28	True	NA	NA	False	NA	NA	NA	59783866	59769636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59782253_59782335_59783727
ENSMUST00000095128.10	chr4	-	659	4	FSM	ENSMUSG00000071014.11	ENSMUST00000095128.10	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	2502	junction_3	28.8251433455046	35361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTAGCTACTTTTTTCT	-10	True	NA	63	True	AGTAAA	-20	NA	40279421	40270590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_40270848_40272809_40272855_40277652_40277746_40279157
ENSMUST00000095145.12	chr4	+	2403	4	FSM	ENSMUSG00000078773.12	ENSMUST00000095145.12	2403	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	85.9883713068226	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTATATATTGAATTTAT	-5	True	NA	NA	False	AATAAA	-9	NA	11558941	11585744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11583676
ENSMUST00000095157.11	chr14	-	2666	11	FSM	ENSMUSG00000068245.15	ENSMUST00000095157.11	2666	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	111.176481325863	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCATGTTGCATCAAAATAT	NA	False	NA	NA	False	AATAAA	-27	NA	59602919	59584855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_59586501_59586670_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59602815
ENSMUST00000095187.4	chr17	-	3530	21	FSM	ENSMUSG00000024135.11	ENSMUST00000095187.4	3530	21	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_9	11.0027269347194	554	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTGTGCTGTTCATTG	NA	False	NA	-1	True	AATAAA	-15	NA	86452603	86292092	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_86292912_86295752_86295938_86307748_86307902_86308858_86309036_86311274_86311382_86358513_86358597_86365103_86365196_86405939_86406048_86406632_86406724_86410270_86410429_86416654_86416763_86422620_86422725_86427341_86427478_86428077_86428175_86433538_86433678_86435143_86435262_86437541_86437709_86443591_86443964_86446496_86446678_86449787_86449868_86452548
ENSMUST00000095188.7	chr17	+	1595	11	FSM	ENSMUSG00000071037.7	ENSMUST00000095188.7	1595	11	0	0	0	0	multi-exon	TRUE	canonical	3	62	junction_6	13.9484766193302	275	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAATTGTTTCAATCTATC	2173	False	NA	10	True	AATAAA	-26	NA	85397979	85766016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_85398292_85403917_85404091_85421210_85421276_85699000_85699062_85700885_85700941_85702029_85702094_85709853_85709921_85738898_85738974_85746954_85747019_85759623_85759756_85765489
ENSMUST00000095214.10	chr8	+	1731	6	FSM	ENSMUSG00000036810.17	ENSMUST00000095214.10	1731	6	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_2	26.3256528883901	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTAGTGGTTAGAGATT	NA	False	NA	9	True	AATAAA	-11	NA	88845396	88861734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88856433_88856974_88857030_88860415
ENSMUST00000095220.4	chr8	+	1907	10	FSM	ENSMUSG00000008167.15	ENSMUST00000095220.4	1907	10	0	0	0	0	multi-exon	TRUE	canonical	3	54	junction_4	11.5864970366477	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTGTGAGCTTTCTGT	NA	False	NA	22	True	AATAAA	-22	NA	85786683	85793750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012_85791126_85791209_85791302_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
ENSMUST00000095259.10	chr8	+	2109	8	FSM	ENSMUSG00000007610.16	ENSMUST00000095259.10	2109	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	25.5774135055258	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCCTTTCCCTCGAACT	NA	False	NA	139	True	NA	NA	NA	71941364	71946044	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943709_71943854_71944068_71944235_71944720_71945000_71945182
ENSMUST00000095273.7	chr8	+	1161	5	FSM	ENSMUSG00000071078.7	ENSMUST00000095273.7	1161	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	248.840310239318	4890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAACCAAACACCCCA	461	False	NA	9	True	NA	NA	NA	70583996	70586389	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70584250_70584567_70584659_70585061_70585168_70585236_70585305_70585746
ENSMUST00000095410.8	chr12	+	2384	3	FSM	ENSMUSG00000037957.15	ENSMUST00000095410.8	2384	3	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_2	4	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTTGTAGAACTCTGAT	5346	False	NA	19	True	AATAAA	-18	NA	110704425	110761462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_110704712_110745729_110745913_110759547
ENSMUST00000095457.11	chr10	+	2598	13	FSM	ENSMUSG00000006498.17	ENSMUST00000095457.11	2598	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_3	485.428926883798	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTCCCTGAGCCCTT	1624	False	NA	31	True	ATTAAA	-15	NA	79690501	79700193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694905_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ENSMUST00000095458.6	chr13	+	1918	3	FSM	ENSMUSG00000071180.6	ENSMUST00000095458.6	1918	3	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	47	1129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCCTGAGTTTTTGTCT	NA	False	NA	NA	False	AATAAA	-44	NA	108180979	108185706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_108181021_108182958_108183103_108183973
ENSMUST00000095544.6	chr17	-	638	2	FSM	ENSMUSG00000071230.8	ENSMUST00000095544.6	638	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCGTGTGACCCTTTTT	8957	False	NA	NA	False	AATAAA	-20	NA	24877431	24876303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24876479_24876968
ENSMUST00000095579.11	chr17	-	1450	14	FSM	ENSMUSG00000041319.15	ENSMUST00000095579.11	1450	14	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_13	93.5049281997111	831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGCATTTTATTCCC	754	False	NA	-21	True	AATAAA	-14	NA	23892856	23887591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892714_23892807
ENSMUST00000095595.9	chr17	+	2698	6	FSM	ENSMUSG00000023902.19	ENSMUST00000095595.9	2698	6	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	55.9335319821661	268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	879	False	NA	28	True	AGTAAA	-12	NA	23819829	23829986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_23819934_23824478_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240
ENSMUST00000095725.11	chr10	+	2127	8	FSM	ENSMUSG00000038240.14	ENSMUST00000095725.11	2127	8	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	6.25316246521123	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAAAGTGTCTGCCTTTC	NA	False	NA	NA	False	ATTAAA	-28	NA	43097481	43316598	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_43098057_43174794_43174930_43221523_43221723_43248130_43248206_43269866_43270041_43271556_43271689_43289510_43289544_43315794
ENSMUST00000095752.9	chr6	+	3130	12	FSM	ENSMUSG00000071337.12	ENSMUST00000095752.9	3130	12	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	49.110770393011	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTGTAAACTTCTACA	9775	False	NA	22	True	AATAAA	-24	NA	86381294	86409167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86397305_86397394_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
ENSMUST00000095786.6	chr6	-	1769	4	FSM	ENSMUSG00000030042.16	ENSMUST00000095786.6	1769	4	0	0	0	0	multi-exon	FALSE	canonical	3	735	junction_3	133.522365999941	8871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTCTTGAAGTGTCTTA	NA	False	NA	1	True	ATTAAA	-27	NA	82629910	82623681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_82625018_82628417_82628460_82629063_82629149_82629604
ENSMUST00000095794.4	chr10	-	1195	7	FSM	ENSMUSG00000071359.14	ENSMUST00000095794.4	1195	7	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_6	96.5702104976248	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCTCTCTTCATATC	NA	False	NA	-15	True	AATAAA	-8	NA	22607837	22581279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587991_22607681
ENSMUST00000095795.5	chr10	+	1271	7	FSM	ENSMUSG00000078452.11	ENSMUST00000095795.5	1271	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	20.4402924527893	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	22237792	22250038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_22237809_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
ENSMUST00000095893.11	chr10	+	2429	5	FSM	ENSMUSG00000061759.16	ENSMUST00000095893.11	2429	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	80.5927260985754	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCACTGGTTTTTATTTG	NA	False	NA	9	True	AATAAA	-18	NA	4382466	4405141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_4382712_4384827_4384934_4389491_4389737_4400646_4400810_4403471
ENSMUST00000095903.7	chr12	-	1923	3	FSM	ENSMUSG00000071456.7	ENSMUST00000095903.7	1923	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	5.5	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTGAATTGTTAAGTGCT	NA	False	NA	NA	False	AATAAA	-11	NA	3476740	3455309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_3456712_3457643_3457925_3476500
ENSMUST00000095925.5	chr14	+	1372	6	FSM	ENSMUSG00000068417.9	ENSMUST00000095925.5	1372	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	36.6911433454996	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGACTTGCTTGTCTTGGTT	NA	False	NA	NA	False	NA	NA	NA	51193448	51202206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_51193686_51196971_51197142_51200561_51200666_51200846_51201023_51201135_51201327_51201712
ENSMUST00000095932.5	chr14	-	1509	4	FSM	ENSMUSG00000071470.5	ENSMUST00000095932.5	1509	4	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_1	17.4419672692682	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTCTTTTCTTTTTGGC	8876	False	NA	1	True	AATAAA	-20	NA	51033185	51026704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_51027470_51029429_51029764_51031014_51031332_51033092
ENSMUST00000096014.5	chr19	-	362	4	FSM	ENSMUSG00000071528.5	ENSMUST00000096014.5	362	4	0	0	0	0	multi-exon	FALSE	canonical	3	3669	junction_3	1157.30270696804	79035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCTGGTTGTCTTTATT	NA	False	NA	-4	True	AATAAA	-13	NA	47079082	47071906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_47072009_47074393_47074487_47074572_47074669_47079011
ENSMUST00000096020.7	chr10	+	468	1	FSM	ENSMUSG00000071532.7	ENSMUST00000096020.7	468	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2376	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCCAGATGGCT	7726	False	NA	NA	False	NA	NA	NA	14398821	14399289	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_14398800_14399300
ENSMUST00000096045.9	chr16	+	1479	7	FSM	ENSMUSG00000058550.16	ENSMUST00000096045.9	1479	7	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_4	76.5188792971309	2808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104097	48114600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_48104205_48108240_48108359_48109401_48109569_48109690_48109742_48111376_48111678_48113273_48113470_48114061
ENSMUST00000096057.5	chr16	-	1240	4	FSM	ENSMUSG00000022658.11	ENSMUST00000096057.5	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	1.63299316185545	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAGAGTATAACTTTATT	NA	False	NA	-9	True	AATAAA	-15	NA	45544971	45531592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_45532073_45533294_45533398_45543285_45543461_45544489
ENSMUST00000096096.12	chr19	+	2366	9	FSM	ENSMUSG00000024989.16	ENSMUST00000096096.12	2366	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	113.762636660724	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043487	38062869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_38043530_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUST00000096109.11	chr16	-	993	6	FSM	ENSMUSG00000023791.19	ENSMUST00000096109.11	993	6	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_3	17.8258239641258	2697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTAACTGGTTAGTTTG	NA	False	NA	-8	True	AATAAA	-22	NA	31918556	31903241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918287
ENSMUST00000096114.13	chr19	-	1597	7	FSM	ENSMUSG00000071573.15	ENSMUST00000096114.13	1597	7	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_4	3.8151743807532	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTCGTTTTATAGCCTC	NA	False	NA	NA	False	AATAAA	-15	NA	33369665	33115146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_33115675_33145721_33145898_33179874_33180049_33359766_33359926_33367316_33367460_33368479_33368586_33369354
ENSMUST00000096199.5	chr16	-	1136	7	FSM	ENSMUSG00000022822.17	ENSMUST00000096199.5	1136	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	91.9287163452688	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGGTATTTACTGCTG	NA	False	NA	-9	True	AATAAA	-17	NA	20245104	20219510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_20219822_20221009_20221085_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
ENSMUST00000096239.7	chr19	+	2753	9	FSM	ENSMUSG00000071645.7	ENSMUST00000096239.7	2753	9	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_7	18.3234822018087	291	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTTCTTTTGCATAC	1357	False	NA	11	True	AATAAA	-26	NA	8931210	8943574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8931386_8932750_8932942_8936450_8936767_8937106_8937208_8939707_8940187_8941383_8941494_8941627_8941739_8941924_8942018_8942397
ENSMUST00000096240.3	chr19	+	3135	18	FSM	ENSMUSG00000071646.10	ENSMUST00000096240.3	3135	18	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_3	72.954410564141	2791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTCAGCTATTCTGTGTG	3469	False	NA	20	True	AATAAA	-24	NA	8919238	8929667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
ENSMUST00000096241.6	chr19	+	3322	22	FSM	ENSMUSG00000071647.6	ENSMUST00000096241.6	3322	22	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	12.0183155765295	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGGTGCTTTTGTGCG	1915	False	NA	6	True	AATAAA	-14	NA	8906915	8918946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8907317_8908162_8908335_8908407_8908669_8908753_8908868_8910605_8910674_8910786_8910911_8911133_8911305_8911450_8911521_8911605_8911717_8912314_8912411_8913667_8913824_8913982_8914125_8914492_8914645_8914725_8914852_8914926_8915059_8915825_8915894_8916391_8916481_8916551_8916650_8916780_8916869_8917942_8918042_8918266_8918398_8918493
ENSMUST00000096243.7	chr19	+	1603	5	FSM	ENSMUSG00000071649.7	ENSMUST00000096243.7	1603	5	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_3	18.060661671157	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCTTCATGGTTTCCTTC	4712	False	NA	19	True	AATAAA	-16	NA	8897737	8904600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8898013_8899169_8899345_8902901_8903263_8903445_8903737_8904099
ENSMUST00000096246.5	chr19	+	3860	25	FSM	ENSMUSG00000071650.7	ENSMUST00000096246.5	3860	25	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_6	273.686404967234	1652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATGTCTGAATTATACT	1893	False	NA	-56	True	GATAAA	-42	NA	8875464	8894036	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8885214_8885281_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
ENSMUST00000096249.7	chr19	+	3274	2	FSM	ENSMUSG00000071652.9	ENSMUST00000096249.7	3274	2	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_1	0	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCAGTGTTTCTATCTG	NA	False	NA	20	True	AATAAA	-21	NA	8870368	8875252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8870513_8872122
ENSMUST00000096251.10	chr19	+	806	4	FSM	ENSMUSG00000071653.10	ENSMUST00000096251.10	806	4	0	0	0	0	multi-exon	FALSE	canonical	3	2965	junction_2	196.086715511276	14315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCCAACATTTGCCAGGC	NA	False	NA	NA	False	NA	NA	NA	8866216	8868245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774
ENSMUST00000096253.7	chr19	-	821	2	FSM	ENSMUSG00000071654.7	ENSMUST00000096253.7	821	2	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_1	0	7275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTGGAAAGACCATCTC	NA	False	NA	-8	True	AATGAA	-25	NA	8858287	8857377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_8857981_8858069
ENSMUST00000096255.7	chr19	+	1127	8	FSM	ENSMUSG00000071655.13	ENSMUST00000096255.7	1127	8	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_3	101.556257657457	1618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTGGCTCCTTCCAGA	6013	False	NA	33	True	AATAAA	-21	NA	8849023	8853028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ENSMUST00000096261.5	chr19	-	890	8	FSM	ENSMUSG00000071662.5	ENSMUST00000096261.5	890	8	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_5	79.6292429106959	17040	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGTTTGGTTTTATGT	NA	False	NA	-1	True	ATTAAA	-17	NA	8775941	8770490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8774599_8774760_8775587_8775698_8775822
ENSMUST00000096272.11	chr16	-	2663	4	FSM	ENSMUSG00000065979.13	ENSMUST00000096272.11	2663	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_3	6.59966329107444	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAATAAAAAACAA	NA	False	NA	-40	True	NA	NA	NA	11727287	11621584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_11623448_11646038_11646462_11705441_11705661_11727129
ENSMUST00000096321.3	chrX	+	2779	4	FSM	ENSMUSG00000072969.3	ENSMUST00000096321.3	2779	4	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_3	8.05536398239638	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACATTGTTCCAGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	134643481	134648071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_134643728_134644311_134644364_134645247_134645325_134645667
ENSMUST00000096348.10	chrX	-	4151	23	FSM	ENSMUSG00000025665.17	ENSMUST00000096348.10	4151	23	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_4	39.3304500040447	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTAGTCTTGGTGTAGT	NA	False	NA	-6	True	ATTAAA	-31	NA	110372892	110297888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546
ENSMUST00000096427.6	chr1	+	789	1	FSM	ENSMUSG00000090489.4	ENSMUST00000096427.6	789	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	169	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTACACTGAGTTTTCTGT	5735	False	NA	NA	False	AAAAAG	-36	NA	93349421	93350210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_93349400_93350200
ENSMUST00000096447.9	chrX	-	1773	6	FSM	ENSMUSG00000023074.12	ENSMUST00000096447.9	1773	6	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	3.77359245282264	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCCTAAGCACAACGACT	NA	False	NA	NA	False	AATAAA	-20	NA	52459379	52433884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_52434867_52436580_52436743_52444532_52444751_52446286_52446363_52446450_52446705_52459298
ENSMUST00000096482.10	chr15	-	3118	10	FSM	ENSMUSG00000054115.13	ENSMUST00000096482.10	3118	10	0	0	0	0	multi-exon	TRUE	canonical	3	163	junction_7	20.0690167197789	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTGAGCTGCTTTTTAT	NA	False	NA	NA	False	AATAAA	-20	NA	9140452	9112072	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_9113956_9116947_9117056_9117177_9117230_9121638_9121770_9122323_9122423_9123956_9124092_9125146_9125291_9127972_9128085_9139518_9139791_9140270
ENSMUST00000096573.4	chr18	-	710	4	FSM	ENSMUSG00000024352.13	ENSMUST00000096573.4	710	4	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_2	13.2748718344933	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTGTTTTATCCCATTT	NA	False	NA	-1	True	NA	NA	NA	35795239	35793068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_35793407_35793496_35793628_35793844_35793911_35795064
ENSMUST00000096639.12	chr7	-	2249	9	FSM	ENSMUSG00000070426.13	ENSMUST00000096639.12	2249	9	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_4	49.7203114933927	991	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCCTTTTTTTTTTTGCC	NA	False	NA	0	True	AATAAA	-34	NA	101714365	101668343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714272
ENSMUST00000096744.8	chr7	+	2813	3	FSM	ENSMUSG00000068566.14	ENSMUST00000096744.8	2813	3	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_1	308.5	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	230	False	NA	14	True	AATATA	-8	NA	3339058	3347865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3339156_3341727_3341816_3345237
ENSMUST00000096990.10	chr16	-	1747	18	FSM	ENSMUSG00000000028.16	ENSMUST00000096990.10	1747	18	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_15	122.52143375795	1686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCCTCTGGGTCTGTGAT	NA	False	NA	-8	True	AATAAA	-15	NA	18630376	18599202	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18629138_18629232_18630054_18630115_18630264
ENSMUST00000097014.7	chr15	-	1803	4	FSM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	0	0	0	0	multi-exon	FALSE	canonical	3	1268	junction_3	1593.04014038846	12228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTGTGTTCTATATT	NA	False	NA	-4	True	AATAAA	-19	NA	98851584	98847717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98848896_98849068_98849218_98849349_98849573_98851331
ENSMUST00000097175.5	chr16	+	1948	7	FSM	ENSMUSG00000072419.6	ENSMUST00000097175.5	1948	7	0	0	0	0	multi-exon	FALSE	canonical	3	478	junction_4	51.0968579160098	3240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGCAGCTCACTCGCCTG	NA	False	NA	NA	False	AATACA	-17	NA	48130839	48140086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995
ENSMUST00000097193.3	chr1	+	787	3	FSM	ENSMUSG00000058267.14	ENSMUST00000097193.3	787	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	1371.5	8540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGAAAGTATGGTCTTTC	NA	False	NA	9	True	AATAAA	-9	NA	160022872	160027382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160023116_160024515_160024675_160026997
ENSMUST00000097299.10	chr17	+	1206	4	FSM	ENSMUSG00000044279.16	ENSMUST00000097299.10	1206	4	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	33.4099120355355	827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTAGCTGTAAGCTCTT	1526	False	NA	NA	False	AATAAA	-31	NA	57369230	57372918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57369374_57369594_57369767_57370636_57370699_57372089
ENSMUST00000097317.10	chr17	-	1931	13	FSM	ENSMUSG00000023942.16	ENSMUST00000097317.10	1931	13	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_12	734.773547881704	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906829	45896128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906803
ENSMUST00000097336.5	chr17	-	415	4	FSM	ENSMUSG00000073412.7	ENSMUST00000097336.5	415	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.24721912892465	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGCTTCTCTATATGTGT	NA	False	NA	NA	False	AGTAAA	-22	NA	35407415	35404070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35404287_35405560_35405581_35405921_35406018_35407332
ENSMUST00000097343.11	chr17	+	1607	11	FSM	ENSMUSG00000024369.17	ENSMUST00000097343.11	1607	11	0	0	0	0	multi-exon	TRUE	canonical	3	52	junction_1	144.013228559046	2562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTTGTTATTGTAACTGC	32	False	NA	NA	False	AAAAAG	-10	NA	35069366	35075345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35069651_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
ENSMUST00000097398.12	chr17	-	517	3	FSM	ENSMUSG00000079707.11	ENSMUST00000097398.12	517	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	7.5	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCCTCGTGTTACCTT	NA	False	NA	NA	False	AATAAA	-16	NA	15261701	15247413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_15247580_15253608_15253816_15261557
ENSMUST00000097400.5	chr17	-	747	5	FSM	ENSMUSG00000079710.11	ENSMUST00000097400.5	747	5	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_4	12.1449578014911	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTGAGCCTCGTGTTAC	NA	False	NA	NA	False	AATAAA	-13	NA	15261799	15216048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_15216212_15219403_15219560_15222241_15222449_15230189_15230314_15261702
ENSMUST00000097535.11	chr1	-	1956	3	FSM	ENSMUSG00000073538.11	ENSMUST00000097535.11	1956	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	43	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAGAAAAAATATAA	NA	False	NA	NA	False	AATAAA	-5	NA	153284175	153280572	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_153282348_153283347_153283436_153284082
ENSMUST00000097536.6	chr1	+	1737	3	FSM	ENSMUSG00000008475.14	ENSMUST00000097536.6	1737	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	15	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGTAACTCTCCAGTTA	NA	False	NA	100	True	AATAAA	-35	NA	152642292	152651348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_152642619_152644611_152644685_152650010
ENSMUST00000097543.8	chr1	+	3337	14	FSM	ENSMUSG00000023150.15	ENSMUST00000097543.8	3337	14	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	362.778266997786	2142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCCTTGCACTGTGGGAT	NA	False	NA	10	True	ATTAAA	-14	NA	151220268	151240166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
ENSMUST00000097546.9	chr1	-	3174	13	FSM	ENSMUSG00000006010.15	ENSMUST00000097546.9	3174	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	38.8639900450561	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTAATGTGGAATTTTA	658	False	NA	NA	False	AATAAA	-13	NA	150268806	150237063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268440
ENSMUST00000097590.5	chr18	-	3980	32	FSM	ENSMUSG00000024493.10	ENSMUST00000097590.5	3980	32	0	0	0	0	multi-exon	FALSE	canonical	1	536	junction_20	328.950941881023	961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTTTTAATCTTTATAC	NA	False	NA	41	True	AATAAA	-17	NA	42395259	42335362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
ENSMUST00000097597.7	chr1	-	1913	13	FSM	ENSMUSG00000036086.17	ENSMUST00000097597.7	1913	13	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_12	65.8438282773885	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGATATGTGTGATTGGTG	NA	False	NA	NA	False	AATAAA	-15	NA	128030784	127914846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_127915137_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128030704
ENSMUST00000097626.10	chr18	-	3005	21	FSM	ENSMUSG00000003778.15	ENSMUST00000097626.10	3005	21	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_13	121.034540524596	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGTGTGTATATATAACA	NA	False	NA	-34	True	NA	NA	NA	34757654	34732911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
ENSMUST00000097642.4	chr1	-	438	3	FSM	ENSMUSG00000073616.11	ENSMUST00000097642.4	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	610	junction_1	1	11618	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGCTTTTAGATGCA	NA	False	NA	-19	True	AATAAA	-30	NA	92569707	92564866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_92565126_92567408_92567482_92569601
ENSMUST00000097646.5	chr18	+	1065	5	FSM	ENSMUSG00000024273.9	ENSMUST00000097646.5	1065	5	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_2	17.066048165876	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAATGGTAGTATTTAATT	359	False	NA	17	True	GATAAA	-14	NA	24603925	24610855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_24604038_24604118_24604142_24606006_24606207_24608581_24608782_24610325
ENSMUST00000097672.4	chr1	+	901	4	FSM	ENSMUSG00000073633.10	ENSMUST00000097672.4	901	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	27.3536509852382	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTCTGGTTTGTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	84817561	84878208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_84817690_84858812_84858922_84874210_84874384_84877717
ENSMUST00000097698.5	chr1	-	932	7	FSM	ENSMUSG00000026189.14	ENSMUST00000097698.5	932	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	105.091494528445	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATGAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-45	NA	72323418	72306154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_72306330_72306565_72306677_72309435_72309533_72314044_72314127_72315324_72315491_72316445_72316580_72323251
ENSMUST00000097699.3	chr1	+	826	3	FSM	ENSMUSG00000073652.11	ENSMUST00000097699.3	826	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGGTGTCAGTAGTCAT	NA	False	NA	NA	False	AGTAAA	-28	NA	71691995	71696616	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_71692179_71692315_71692546_71696203
ENSMUST00000097709.11	chr1	-	2302	9	FSM	ENSMUSG00000025950.17	ENSMUST00000097709.11	2302	9	0	0	0	0	multi-exon	FALSE	canonical	3	773	junction_5	91.7393556495793	745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTATTATGTGTTTTTA	NA	False	NA	-6	True	ATTAAA	-28	NA	65218340	65197774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218148
ENSMUST00000097715.4	chr19	-	1398	3	FSM	ENSMUSG00000025208.10	ENSMUST00000097715.4	1398	3	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_1	27.5	4239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGACAGTGTAGGGTC	NA	False	NA	NA	False	NA	NA	NA	44994881	44993267	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_44994380_44994501_44994609_44994702
ENSMUST00000097732.11	chr1	-	1754	7	FSM	ENSMUSG00000048495.17	ENSMUST00000097732.11	1754	7	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_5	15.6178316890235	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTATTGGTGGAGTGGCCG	NA	False	NA	-18	True	AATAAA	-43	NA	57445630	57427398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57433251_57435885_57435956_57440546_57440683_57445542
ENSMUST00000097737.5	chr4	-	1243	8	FSM	ENSMUSG00000051557.16	ENSMUST00000097737.5	1243	8	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_3	43.9103911276089	1145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGTCTGTTTATTACT	9080	False	NA	NA	False	AATAAA	-14	NA	155976238	155973318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
ENSMUST00000097747.9	chr4	+	1479	3	FSM	ENSMUSG00000073684.14	ENSMUST00000097747.9	1479	3	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_2	4.5	849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTTGTTTCCTTCATAG	NA	False	NA	5	True	NA	NA	NA	155334459	155341141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155335108_155335212_155335494_155340591
ENSMUST00000097826.6	chr1	+	2728	17	FSM	ENSMUSG00000025915.15	ENSMUST00000097826.6	2728	17	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	27.8654692226777	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGGTGTGAATGTGTG	9939	False	NA	NA	False	AATAAA	-11	NA	9918621	9970078	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_9918774_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
ENSMUST00000097844.9	chr4	+	3055	6	FSM	ENSMUSG00000028676.18	ENSMUST00000097844.9	3055	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	618.505101029894	4165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGATTAACTGGAATTAT	4321	False	NA	NA	False	AATAAA	-17	NA	135583057	135593126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_135583603_135585615_135585721_135589084_135589189_135590350_135590514_135590836_135590888_135591039
ENSMUST00000097856.10	chr4	-	1863	8	FSM	ENSMUSG00000028878.12	ENSMUST00000097856.10	1863	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	31.9367998345712	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGGATCTTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	132649804	132627561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132628620_132629313_132629416_132631208_132631345_132640979_132641138_132643429_132643583_132645032_132645088_132648037_132648103_132649668
ENSMUST00000097961.9	chr4	+	3079	15	FSM	ENSMUSG00000073792.12	ENSMUST00000097961.9	3079	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	55.2805922322746	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGCGTGTATTTCTT	NA	False	NA	18	True	ATTAAA	-18	NA	99603901	99651697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630657_99631991_99632178_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
ENSMUST00000097981.6	chr4	-	1390	2	FSM	ENSMUSG00000073802.6	ENSMUST00000097981.6	1390	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAAGTTCAACTTGGTTT	NA	False	NA	NA	False	AAGAAA	-18	NA	89229276	89224535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_89225552_89228902
ENSMUST00000098036.9	chr7	-	1571	14	FSM	ENSMUSG00000030720.17	ENSMUST00000098036.9	1571	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_11	40.0146422904558	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	126182362	126171257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126180817_126180915_126181935_126182015_126182171
ENSMUST00000098180.10	chr7	+	3827	8	FSM	ENSMUSG00000072244.12	ENSMUST00000098180.10	3827	8	0	0	0	0	multi-exon	FALSE	canonical	2	421	junction_3	109.572825470701	731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGAGACTTGAAGGTGCA	NA	False	NA	NA	False	AATAAA	-18	NA	103868001	103884359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
ENSMUST00000098300.6	chr7	+	2039	13	FSM	ENSMUSG00000035704.18	ENSMUST00000098300.6	2039	13	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_8	19.8289560996034	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCACATTCACTTTCCT	NA	False	NA	63	True	NA	NA	NA	97020812	97041392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892_97033014_97036008_97036149_97037655_97037796_97039448_97039547_97040095_97040169_97040734
ENSMUST00000098378.9	chr7	+	2776	9	FSM	ENSMUSG00000074071.12	ENSMUST00000098378.9	2776	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	48.9283596189367	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTAGGACTTTCAAGGT	NA	False	NA	53	True	AATAAA	-24	NA	67949860	68012835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_67949872_67950578_67950712_67954299_67954400_67971567_67971654_67978969_67979148_67999981_68000165_68003356_68003492_68007932_68008037_68010989
ENSMUST00000098407.3	chr16	+	1998	4	FSM	ENSMUSG00000053062.17	ENSMUST00000098407.3	1998	4	0	0	0	0	multi-exon	FALSE	canonical	3	4189	junction_2	31.1555238547945	1025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGTCTTCAGAATAAACAT	NA	False	NA	NA	False	NA	NA	NA	84571273	84607884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231
ENSMUST00000098414.5	chr7	-	3053	4	FSM	ENSMUSG00000074093.5	ENSMUST00000098414.5	3053	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	8.05536398239638	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGGCAAGAGTTAGATGCA	NA	False	NA	-19	True	AATAAA	-17	NA	51655766	51646918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_51649526_51653093_51653208_51653682_51653734_51655485
ENSMUST00000098444.9	chr8	+	1273	3	FSM	ENSMUSG00000005699.17	ENSMUST00000098444.9	1273	3	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_1	3	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGTGGTCCTTCTGTGTC	NA	False	NA	11	True	ATTAAA	-17	NA	106427785	106430125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106427950_106428805_106429029_106429239
ENSMUST00000098461.10	chr7	-	1227	8	FSM	ENSMUSG00000030798.16	ENSMUST00000098461.10	1227	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	15.6426940630769	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTTTTGGTAAAAA	4419	False	NA	-13	True	AATAAA	-25	NA	44888264	44883055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44883403_44884107_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083
ENSMUST00000098559.3	chr7	+	470	6	FSM	ENSMUSG00000074199.8	ENSMUST00000098559.3	470	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_5	10.9105453575887	639	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTTTCTGTCCTTATC	NA	False	NA	23	True	AATAAA	-28	NA	30487329	30490522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30487448_30488929_30488969_30489137_30489180_30489336_30489382_30489992_30490041_30490344
ENSMUST00000098594.4	chr7	+	393	4	FSM	ENSMUSG00000074218.4	ENSMUST00000098594.4	393	4	0	0	0	0	multi-exon	FALSE	canonical	3	920	junction_1	139.802241279125	11531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTCCAGCCTGTGTGT	5674	False	NA	24	True	AATAAA	-25	NA	29883568	29885455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_29883671_29884509_29884597_29884699_29884785_29885336
ENSMUST00000098596.11	chr7	+	2117	5	FSM	ENSMUSG00000074220.11	ENSMUST00000098596.11	2117	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	7.82224392358101	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTGAAAATGAAGGCTT	5259	False	NA	NA	False	NA	NA	NA	29821366	29834375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_29821502_29825192_29825267_29830125_29830253_29830956_29831050_29832687
ENSMUST00000098674.6	chr9	-	883	6	FSM	ENSMUSG00000074269.11	ENSMUST00000098674.6	883	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	244.73054570282	4412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAACAGGTGAATCCACT	9050	False	NA	17	True	AATAAA	-40	NA	58648842	58560138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_58560390_58565039_58565127_58567456_58567655_58573115_58573200_58619298_58619389_58648669
ENSMUST00000098780.10	chr7	-	2022	14	FSM	ENSMUSG00000074358.10	ENSMUST00000098780.10	2022	14	0	0	0	0	multi-exon	TRUE	canonical	3	126	junction_7	27.4902887640592	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAGTGTGTGATTCAA	2760	False	NA	-1	True	AATAAA	-18	NA	18644340	18624807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627691_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
ENSMUST00000098801.9	chr7	+	934	5	FSM	ENSMUSG00000074365.14	ENSMUST00000098801.9	934	5	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_3	373.339992500134	3432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTGCTTTAAAAGAAAAT	NA	False	NA	-11	True	AATAAA	-24	NA	15630048	15637945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_15630183_15631328_15631478_15632369_15632542_15636774_15636933_15637624
ENSMUST00000098814.13	chr7	+	3091	28	FSM	ENSMUSG00000056394.21	ENSMUST00000098814.13	3091	28	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	267.791767474326	1662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGTGAGGAGGTCTACA	2620	False	NA	30	True	AATAAA	-18	NA	13012751	13045350	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
ENSMUST00000098843.3	chr3	+	488	1	FSM	ENSMUSG00000074403.3	ENSMUST00000098843.3	488	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1754	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGAGCCACCTACGTTGT	1980	False	NA	NA	False	NA	NA	NA	96175969	96176457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96176000_96176500
ENSMUST00000098852.3	chr9	+	2772	15	FSM	ENSMUSG00000032135.16	ENSMUST00000098852.3	2772	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	9.18628080901302	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGATGCTGTGTTCCATT	4	True	NA	16	True	AATAAA	-18	NA	44045954	44054021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44046054_44047814_44047946_44048034_44048243_44048335_44048407_44048514_44048603_44050131_44050312_44050454_44050577_44050696_44050860_44050949_44051069_44051156_44051299_44051433_44051556_44051658_44051801_44051894_44051991_44052141_44052290_44053080
ENSMUST00000098859.10	chr7	-	912	8	FSM	ENSMUSG00000035458.16	ENSMUST00000098859.10	912	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	4.77664385637157	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTGTGTGTCTGCTAAC	6917	False	NA	-2	True	AATAAA	-17	NA	4525527	4521303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4521451_4522396_4522574_4523436_4523527_4523961_4524094_4524343_4524386_4524814_4524902_4525068_4525082_4525303
ENSMUST00000098910.3	chr3	+	1123	3	FSM	ENSMUSG00000074457.11	ENSMUST00000098910.3	1123	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	10.5	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGCTGCTTCCTTTGT	NA	False	NA	11	True	AATAAA	-22	NA	90448467	90450458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_90448625_90449300_90449480_90449671
ENSMUST00000098911.10	chr3	+	1127	3	FSM	ENSMUSG00000074457.11	ENSMUST00000098911.10	1127	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	6	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTCTTGGCTGCTTCCTT	NA	False	NA	8	True	AATAAA	-19	NA	90444560	90450455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_90444725_90449300_90449480_90449671
ENSMUST00000098937.10	chr9	-	1673	9	FSM	ENSMUSG00000066839.13	ENSMUST00000098937.10	1673	9	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_8	44.5222907654132	1020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5896	False	NA	-9	True	AATAAA	-15	NA	21996723	21983541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995505_21996644
ENSMUST00000098942.6	chr9	-	1366	5	FSM	ENSMUSG00000074476.7	ENSMUST00000098942.6	1366	5	0	0	0	0	multi-exon	FALSE	canonical	3	1938	junction_4	159.647071692531	20162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGTGTGTGTGCAG	NA	False	NA	NA	False	NA	NA	NA	21671599	21666737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21667592_21668412_21668490_21668585_21668691_21668980_21669126_21671414
ENSMUST00000098990.10	chr3	-	2799	8	FSM	ENSMUSG00000074513.10	ENSMUST00000098990.10	2799	8	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_6	7.88954358370519	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGCCCTGTCCTTAT	NA	False	NA	-3	True	ATTAAA	-16	NA	84489841	84403399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84441893_84442003_84455240_84455343_84489720
ENSMUST00000098994.7	chr9	+	583	4	FSM	ENSMUSG00000048758.15	ENSMUST00000098994.7	583	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	2179.51131117862	4250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGCAGATGACCAGTGTC	NA	False	NA	-57	True	NA	NA	NA	106306736	106308707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106306776_106307174_106307214_106307506_106307572_106308267
ENSMUST00000099009.9	chr2	+	3823	5	FSM	ENSMUSG00000078894.10	ENSMUST00000099009.9	3823	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	24.8432586429397	464	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGGTGGGATAGAC	3035	False	NA	NA	False	AATAAA	-25	NA	175968361	175982121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_175968480_175971917_175971973_175977111_175977239_175977443_175977505_175978659
ENSMUST00000099106.10	chr3	+	603	5	FSM	ENSMUSG00000074604.10	ENSMUST00000099106.10	603	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.68954408012983	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGCTGTGGCTTTGTGG	8625	False	NA	NA	False	AATAAA	-15	NA	51568599	51590096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_51568728_51571931_51572032_51584985_51585057_51589217_51589300_51589874
ENSMUST00000099151.6	chr3	+	2057	1	FSM	ENSMUSG00000074637.8	ENSMUST00000099151.6	2057	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6830	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGCCTGAGTCTTTCATT	4607	False	NA	19	True	AATAAA	-24	NA	34704553	34706610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_34704600_34706600
ENSMUST00000099173.11	chr2	-	2542	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	0	0	0	0	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	52293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCATTGCTTTTGTGTGTT	3632	False	NA	-8	True	AATAAA	-32	NA	154734855	154713329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
ENSMUST00000099224.10	chr2	+	4206	13	FSM	ENSMUSG00000074698.11	ENSMUST00000099224.10	4206	13	0	0	0	0	multi-exon	FALSE	canonical	2	55	junction_1	32.1674222709181	3007	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCATGCAGCCTGAGCAA	NA	False	NA	19	True	AATAAA	-20	NA	152068758	152123772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
ENSMUST00000099272.3	chr5	+	1067	6	FSM	ENSMUSG00000041453.13	ENSMUST00000099272.3	1067	6	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	5077.72757835629	53051	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	False	NA	2	True	AATAAA	-16	NA	146770011	146772796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_146770551_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
ENSMUST00000099278.9	chr2	+	2183	14	FSM	ENSMUSG00000074749.11	ENSMUST00000099278.9	2183	14	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_6	16.1728825562271	242	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTCACTGTAATTAGGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	146697783	146812017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_146697964_146703039_146703103_146705626_146705790_146712685_146712767_146730940_146731587_146732900_146733205_146777722_146777805_146783929_146784096_146784836_146784900_146792442_146792509_146794897_146794985_146798119_146798217_146811463_146811508_146811876
ENSMUST00000099353.6	chr19	+	1657	4	FSM	ENSMUSG00000025066.11	ENSMUST00000099353.6	1657	4	0	0	0	0	multi-exon	FALSE	canonical	3	1732	junction_1	59.801523577767	6426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTCATATCCTTATTTC	NA	False	NA	68	True	ACTAAA	-21	NA	47720120	47724027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_47720261_47721068_47721428_47721957_47722351_47723262
ENSMUST00000099384.4	chr13	+	2407	16	FSM	ENSMUSG00000057649.7	ENSMUST00000099384.4	2407	16	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_6	21.3306248280625	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCCCGTCCGCTTTGATG	NA	False	NA	29	True	AATAAA	-26	NA	74085956	74109014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090809_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
ENSMUST00000099393.4	chr19	+	2666	1	FSM	ENSMUSG00000074811.4	ENSMUST00000099393.4	2666	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGCGTGTTAAGTTTTG	NA	False	NA	25	True	AATATA	-14	NA	45991946	45994612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_45991900_45994600
ENSMUST00000099441.6	chr13	-	2303	12	FSM	ENSMUSG00000033114.12	ENSMUST00000099441.6	2303	12	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_8	14.1169846708972	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTTATGGTTTTTGGTT	NA	False	NA	-1	True	NA	NA	NA	64277169	64244121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64270132_64270167_64276999
ENSMUST00000099443.11	chr19	+	2573	12	FSM	ENSMUSG00000018820.14	ENSMUST00000099443.11	2573	12	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	33.3877792261314	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTTTGTCAGGTCTCCT	NA	False	NA	7	True	AATAAA	-14	NA	42159032	42180156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_42159108_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174243_42174389_42177635_42177683_42177960_42178043_42178821
ENSMUST00000099475.12	chr2	+	525	3	FSM	ENSMUSG00000074884.13	ENSMUST00000099475.12	525	3	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	2874	25091	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGAGCGCCTGGTTTG	NA	False	NA	-3	True	ATTAAA	-14	NA	121279863	121281535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_121279923_121280455_121280565_121281178
ENSMUST00000099484.9	chr5	+	451	3	FSM	ENSMUSG00000066613.15	ENSMUST00000099484.9	451	3	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	18.5	1462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCCAGGTGTCTGATT	8371	False	NA	NA	False	NA	NA	NA	110144387	110155333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_110144500_110154809_110154937_110155121
ENSMUST00000099496.4	chr13	-	1678	13	FSM	ENSMUSG00000025878.17	ENSMUST00000099496.4	1678	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	37.4398591818339	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATCTTATTTCAATAG	NA	False	NA	NA	False	AATATA	-12	NA	55248113	55176107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55225215_55225341_55233422_55233508_55240939_55241095_55248009
ENSMUST00000099538.6	chr10	+	1874	4	FSM	ENSMUSG00000020265.17	ENSMUST00000099538.6	1874	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	598.245397437837	2222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTGGCCTATGTTAAAC	NA	False	NA	25	True	AGTAAA	-18	NA	77442404	77453256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_77442803_77445645_77445775_77449813_77449886_77451981
ENSMUST00000099554.5	chr16	-	1333	5	FSM	ENSMUSG00000022978.12	ENSMUST00000099554.5	1333	5	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_1	13.865424623862	1491	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTTTGGTTTTTTTTTT	NA	False	NA	0	True	AATAAA	-25	NA	90524292	90516199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_90516867_90517541_90517639_90518523_90518647_90523180_90523248_90523913
ENSMUST00000099582.4	chr13	+	962	6	FSM	ENSMUSG00000021420.14	ENSMUST00000099582.4	962	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	98.7886633172046	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGAACTGGAGTGTCTG	NA	False	NA	-75	True	NA	NA	NA	36301840	36721483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_36301989_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
ENSMUST00000099690.4	chr2	-	2224	15	FSM	ENSMUSG00000075023.12	ENSMUST00000099690.4	2224	15	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_14	17.5243271145093	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGGCCTGCTTTATTTC	NA	False	NA	0	True	AATAAA	-23	NA	93699502	93685705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93699366
ENSMUST00000099696.8	chr2	-	1657	9	FSM	ENSMUSG00000027215.14	ENSMUST00000099696.8	1657	9	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_8	3.52668399491647	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGTCTGAAGAGGCGGTA	NA	False	NA	NA	False	ATTAAA	-17	NA	93292756	93249455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205_93264279_93267732_93267816_93292674
ENSMUST00000099706.9	chr10	+	3086	9	FSM	ENSMUSG00000020085.16	ENSMUST00000099706.9	3086	9	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	25.5706741209535	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGACGCTGGAGCTTT	NA	False	NA	2	True	AATAAA	-13	NA	61551101	61574426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361
ENSMUST00000099820.10	chr13	-	2736	10	FSM	ENSMUSG00000057554.14	ENSMUST00000099820.10	2736	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	22.4152725712726	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGGAATGAATACTCTC	NA	False	NA	-20	True	ATTAAA	-11	NA	12476384	12454304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476121
ENSMUST00000099931.11	chr10	+	3809	10	FSM	ENSMUSG00000038332.14	ENSMUST00000099931.11	3809	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	18.7662686623146	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCTTTATTAATTTCAT	-8	True	NA	8	True	AATAAA	-15	NA	41685930	41784420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_41687297_41770037_41770104_41770815_41771017_41772018_41772202_41774178_41774422_41778524_41778673_41779687_41779801_41781169_41781361_41782331_41782477_41783267
ENSMUST00000099934.11	chr10	+	3292	23	FSM	ENSMUSG00000019823.18	ENSMUST00000099934.11	3292	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	48.6000926775296	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTTTATGCTCTGTGCTGG	9147	False	NA	31	True	AATAAA	-20	NA	41352363	41363028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_41352537_41354005_41354311_41354969_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
ENSMUST00000099985.6	chr10	-	1532	3	FSM	ENSMUSG00000075266.6	ENSMUST00000099985.6	1532	3	0	0	0	0	multi-exon	FALSE	canonical	3	2101	junction_1	71	17294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAGAGTGATTGTACTACA	NA	False	NA	NA	False	NA	NA	NA	30076556	30072004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_30073223_30074461_30074576_30076356
ENSMUST00000100015.6	chr2	-	905	8	FSM	ENSMUSG00000027108.16	ENSMUST00000100015.6	905	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	132.211333609089	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCGTGTTTTGTTCAATG	NA	False	NA	-1	True	AATAAA	-19	NA	73044677	72967870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_72968000_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
ENSMUST00000100023.3	chr16	-	3055	2	FSM	ENSMUSG00000051065.10	ENSMUST00000100023.3	3055	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTGTCATTATTACTT	4797	False	NA	0	True	AATAAA	-24	NA	28748425	28644927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_28647762_28748204
ENSMUST00000100036.10	chr10	+	2476	12	FSM	ENSMUSG00000019970.16	ENSMUST00000100036.10	2476	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	266.915376443206	1197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTGTGTCATGTGTTA	NA	False	NA	13	True	AATAAA	-19	NA	21868121	21875797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_21868307_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ENSMUST00000100052.11	chr16	-	3899	16	FSM	ENSMUSG00000033581.18	ENSMUST00000100052.11	3899	16	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_2	81.6059366032208	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGTCTTGGTGTCTT	2273	False	NA	NA	False	AATATA	-16	NA	21982049	21877758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898952_21900483_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21981535
ENSMUST00000100099.10	chr16	+	2235	12	FSM	ENSMUSG00000022721.20	ENSMUST00000100099.10	2235	12	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	76.7194093342424	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	448	False	NA	8	True	AATAAA	-22	NA	18066925	18071366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18067163_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
ENSMUST00000100125.12	chr16	-	1248	5	FSM	ENSMUSG00000022760.18	ENSMUST00000100125.12	1248	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	27.8118679703468	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAATCTCTGTTTGCAGT	7186	False	NA	97	True	NA	NA	NA	17349000	17345845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641_17348722_17348888
ENSMUST00000100134.10	chr11	+	1925	13	FSM	ENSMUSG00000025156.18	ENSMUST00000100134.10	1925	13	0	0	0	0	multi-exon	TRUE	canonical	3	682	junction_1	150.079122650539	2405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCCCCAAGGCTCCTTTC	1394	False	NA	-3	True	ATTAAA	-14	NA	120675100	120679923	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287
ENSMUST00000100162.5	chr15	+	1676	9	FSM	ENSMUSG00000060992.10	ENSMUST00000100162.5	1676	9	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	173.470458580128	4474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTGTGATGGCTCTGT	NA	False	NA	32	True	AATAAA	-20	NA	103181336	103208295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_103181369_103197527_103197597_103199101_103199184_103199755_103199848_103203148_103203205_103204959_103205038_103205160_103205213_103206313_103206353_103207119
ENSMUST00000100168.10	chr15	+	1278	7	FSM	ENSMUSG00000023051.12	ENSMUST00000100168.10	1278	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	143.475510879809	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACCCTGCTCTCTCTGGC	NA	False	NA	NA	False	AATAAA	-19	NA	102426791	102432037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102427038_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
ENSMUST00000100171.3	chr2	+	2613	8	FSM	ENSMUSG00000026864.14	ENSMUST00000100171.3	2613	8	0	0	0	0	multi-exon	FALSE	canonical	3	2314	junction_3	220.40537791135	2347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCAGGTGTGTCTTTCTT	NA	False	NA	18	True	ACTAAA	-14	NA	34662106	34666543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
ENSMUST00000100196.9	chr16	+	1755	13	FSM	ENSMUSG00000039427.15	ENSMUST00000100196.9	1755	13	0	0	0	0	multi-exon	TRUE	canonical	3	181	junction_11	10.4029910228848	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGGAAGTGTTTGCTCT	1280	False	NA	17	True	AATAAA	-18	NA	5051484	5062767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_5051722_5052829_5052908_5053026_5053131_5054183_5054333_5056508_5056599_5056919_5057031_5057769_5057892_5058007_5058047_5058322_5058383_5059149_5059261_5060352_5060468_5061551_5061628_5062304
ENSMUST00000100215.11	chr2	-	1749	12	FSM	ENSMUSG00000026860.17	ENSMUST00000100215.11	1749	12	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	118.792269553979	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGATCTCAGTCCATGAG	NA	False	NA	-10	True	AATAAA	-16	NA	30249252	30234820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ENSMUST00000100220.5	chr2	-	1805	12	FSM	ENSMUSG00000039660.17	ENSMUST00000100220.5	1805	12	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	38.9436974393538	1221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTCTCTAGACCCTGAT	NA	False	NA	-28	True	AATAAA	-15	NA	30068462	30063482	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067734_30067931_30067978_30068401
ENSMUST00000100248.6	chr11	-	1375	8	FSM	ENSMUSG00000018727.20	ENSMUST00000100248.6	1375	8	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_7	53.4469028903587	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600352	113588997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600053
ENSMUST00000100275.10	chr7	+	3177	6	FSM	ENSMUSG00000074165.11	ENSMUST00000100275.10	3177	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	15.7733953225043	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATATGTGGTGAAAATTTT	NA	False	NA	0	True	TATAAA	-13	NA	41282954	41300302	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_41283119_41284103_41284135_41292756_41292857_41296906_41297042_41297242_41297304_41297616
ENSMUST00000100339.9	chr14	-	1090	4	FSM	ENSMUSG00000075486.11	ENSMUST00000100339.9	1090	4	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_3	9.8770215933527	2851	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATGACGTGTCTTGTG	NA	False	NA	NA	False	ATTAAA	-18	NA	101878122	101871201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_101871829_101874389_101874543_101877723_101877736_101877824
ENSMUST00000100370.2	chr15	-	2270	4	FSM	ENSMUSG00000075511.10	ENSMUST00000100370.2	2270	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	6.97614984548545	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAGGAAAGATGAAG	250	False	NA	NA	False	NA	NA	NA	83251478	83241760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_83243152_83248020_83248130_83249229_83249712_83251190
ENSMUST00000100375.11	chr15	-	3157	8	FSM	ENSMUSG00000041815.15	ENSMUST00000100375.11	3157	8	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_6	194.457277192347	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTGAGCTATAATGTCT	NA	False	NA	-13	True	AATAAA	-15	NA	83033532	83010178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83022332_83022724_83033395
ENSMUST00000100387.11	chr11	+	1876	3	FSM	ENSMUSG00000034757.16	ENSMUST00000100387.11	1876	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	44	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTCTTTGTGACTGC	NA	False	NA	16	True	AATAAA	-18	NA	102175764	102180063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_102175915_102178133_102178698_102178901
ENSMUST00000100392.5	chr11	+	2547	10	FSM	ENSMUSG00000034773.17	ENSMUST00000100392.5	2547	10	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_3	21.1502561056204	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTCCCACACCTCCT	NA	False	NA	15	True	AATAAA	-22	NA	102139707	102156013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_102139919_102141504_102141556_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
ENSMUST00000100410.10	chr5	+	3148	10	FSM	ENSMUSG00000041264.17	ENSMUST00000100410.10	3148	10	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_9	101.142119787266	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTTGGTTTCATTTT	NA	False	NA	13	True	ATTAAA	-13	NA	149121475	149152241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
ENSMUST00000100414.12	chr11	+	1220	6	FSM	ENSMUSG00000078656.12	ENSMUST00000100414.12	1220	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	486.921595331322	1505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCGGCCTGTTACTACT	NA	False	NA	16	True	ATTAAA	-13	NA	101144554	101150371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149595
ENSMUST00000100483.3	chr5	-	1073	4	FSM	ENSMUSG00000029610.14	ENSMUST00000100483.3	1073	4	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_3	226.993881464286	1627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTATTTTATTTTAA	NA	False	NA	-18	True	AATAAA	-16	NA	143846665	143839521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_143840009_143841382_143841615_143843366_143843574_143846518
ENSMUST00000100484.6	chr15	-	1899	15	FSM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_9	114.082520258677	5519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCGTCCTGTGCTCCCGTT	2745	False	NA	-11	True	AATAAA	-24	NA	77855013	77843197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
ENSMUST00000100486.6	chr15	-	676	3	FSM	ENSMUSG00000005354.17	ENSMUST00000100486.6	676	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	642	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACGGGCTCACAACCAT	2724	False	NA	NA	False	NA	NA	NA	77813197	77810597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_77810920_77811891_77812155_77813106
ENSMUST00000100496.5	chr14	-	1459	4	FSM	ENSMUSG00000021930.15	ENSMUST00000100496.5	1459	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	60.8075287736277	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTCAGTATTATATTTA	NA	False	NA	NA	False	AATAAA	-13	NA	61794207	61771753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_61772691_61783130_61783298_61787192_61787310_61793969
ENSMUST00000100497.11	chr5	-	1920	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	0	0	0	0	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	43182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTCTGTGGCTTT	8889	False	NA	-1	True	AATAAA	-27	NA	142892509	142888869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
ENSMUST00000100507.8	chr5	+	2945	19	FSM	ENSMUSG00000056076.14	ENSMUST00000100507.8	2945	19	0	0	0	0	multi-exon	TRUE	canonical	3	2428	junction_3	310.145868707844	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCTGTCCTGATCTCTT	NA	False	NA	15	True	AATAAA	-16	NA	140405082	140429115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_140405582_140411016_140411210_140412191_140412312_140412537_140412596_140412771_140412901_140413164_140413323_140415806_140415939_140416016_140416084_140416725_140416773_140418678_140418890_140422002_140422076_140423039_140423163_140424070_140424150_140425667_140425807_140426740_140426867_140427491_140427570_140427878_140427988_140428074_140428192_140428628
ENSMUST00000100527.13	chr15	-	1881	12	FSM	ENSMUSG00000002524.18	ENSMUST00000100527.13	1881	12	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_7	445.848082194703	2990	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCTGTGTCTGAAATTGG	NA	False	NA	0	True	CATAAA	-25	NA	75952762	75942030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390_75947481_75947585_75947682_75949449_75949552_75952698
ENSMUST00000100638.4	chr14	+	1234	7	FSM	ENSMUSG00000072571.4	ENSMUST00000100638.4	1234	7	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_4	6.83130051063973	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGACGCCAGGCGCTG	NA	False	NA	23	True	AATAAA	-37	NA	52254321	52257251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_52254399_52254512_52254655_52255207_52255319_52255410_52255468_52255998_52256110_52256188_52256336_52256662
ENSMUST00000100655.5	chr15	-	1341	6	FSM	ENSMUSG00000101892.2	ENSMUST00000100655.5	1341	6	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_4	117.266534015464	6616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTTCAGCTGCTCTCAG	NA	False	NA	-9	True	AATAAA	-40	NA	57897711	57885654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_57885960_57888669_57888803_57892009_57892441_57894352_57894497_57895379_57895476_57897479
ENSMUST00000100662.10	chr5	+	1867	8	FSM	ENSMUSG00000056310.15	ENSMUST00000100662.10	1867	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	111.662392039211	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTACTGACTTAGGCTG	4928	False	NA	NA	False	TTTAAA	-5	NA	130285875	130306590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130305829
ENSMUST00000100705.11	chr11	-	1447	3	FSM	ENSMUSG00000018648.16	ENSMUST00000100705.11	1447	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	13.5	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTTATTAATCATTTTG	NA	False	NA	-14	True	AATAAA	-15	NA	83959183	83938866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_83940137_83941657_83941747_83959095
ENSMUST00000100799.9	chr14	-	802	4	Antisense	novelGene_ENSMUSG00000012405.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	187570	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCAGAGGAAAGGAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	4200736	4198725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr14_-_4198852_4199235_4199418_4199652_4199790_4200379
ENSMUST00000100811.6	chr14	-	1108	4	FSM	ENSMUSG00000072676.13	ENSMUST00000100811.6	1108	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	63.5627424063989	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTCTCTTGATCGTGA	NA	False	NA	-13	True	NA	NA	NA	25927674	25924593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927468
ENSMUST00000100924.5	chr5	+	692	4	FSM	ENSMUSG00000072754.10	ENSMUST00000100924.5	692	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	4.71404520791032	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTCCAGTCCATGTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	110501961	110503960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_110502160_110502356_110502483_110502590_110502717_110503718
ENSMUST00000100937.4	chr5	-	599	3	FSM	ENSMUSG00000072762.10	ENSMUST00000100937.4	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_2	15.5	1540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTGATTAAATTCTCA	7657	False	NA	NA	False	NA	NA	NA	109899752	109886696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_109886877_109887064_109887192_109899460
ENSMUST00000100955.3	chr17	+	879	3	FSM	ENSMUSG00000034345.15	ENSMUST00000100955.3	879	3	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	535	2448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCTTTTACCCTGGGTAT	1834	False	NA	29	True	ATTAAA	-33	NA	6130204	6135407	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_6130350_6131076_6131150_6134746
ENSMUST00000101014.9	chr11	+	657	4	FSM	ENSMUSG00000060938.15	ENSMUST00000101014.9	657	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6885.97448925471	51319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATTAAAGACTGCTTA	NA	False	NA	9	True	AAGAAA	-41	NA	68792435	68795336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_68792639_68793095_68793263_68794004_68794146_68795190
ENSMUST00000101049.9	chr11	+	2884	24	FSM	ENSMUSG00000020549.15	ENSMUST00000101049.9	2884	24	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_18	22.4427858997362	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTTCAGTGTGGGGTC	NA	False	NA	15	True	AATAAA	-15	NA	64869899	64892426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820
ENSMUST00000101070.5	chr6	+	1201	2	FSM	ENSMUSG00000051256.11	ENSMUST00000101070.5	1201	2	0	0	0	0	multi-exon	FALSE	canonical	3	705	junction_1	0	4277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTGTTGGAGATTTGAT	NA	False	NA	33	True	AATAAA	-37	NA	113419529	113425190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_113419759_113424218
ENSMUST00000101071.4	chr12	-	1299	3	FSM	ENSMUSG00000041359.15	ENSMUST00000101071.4	1299	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	973.5	2449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATTTCTCGTGCTCTTG	NA	False	NA	-10	True	AATAAA	-15	NA	105188975	105183016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_105183961_105184917_105185089_105188791
ENSMUST00000101078.12	chr12	+	1658	5	FSM	ENSMUSG00000079012.12	ENSMUST00000101078.12	1658	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	37.1643310177918	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCTGCTCTCAGCTTGCA	4025	False	NA	17	True	AATACA	-26	NA	104304744	104360515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_104304805_104355322_104355972_104357714_104357989_104358900_104359052_104359991
ENSMUST00000101146.4	chr12	+	1913	11	FSM	ENSMUSG00000021007.15	ENSMUST00000101146.4	1913	11	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	15.3766056072203	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCACATATTTATTAT	NA	False	NA	14	True	NA	NA	NA	98594455	98636071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_98594594_98598221_98598297_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
ENSMUST00000101165.9	chr12	+	2158	11	FSM	ENSMUSG00000021044.16	ENSMUST00000101165.9	2158	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	14.3544418212622	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGACTGTTCCTTCTCAA	NA	False	NA	10	True	AATAAA	-23	NA	88327323	88428489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_88327366_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
ENSMUST00000101180.8	chrX	+	2029	7	FSM	ENSMUSG00000094378.8	ENSMUST00000101180.8	2029	7	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_6	4.6785562825394	296	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTTGTGTTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	148567468	148609690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_148567561_148582582_148582709_148583428_148583509_148587159_148588119_148601122_148601205_148602010_148602061_148609050
ENSMUST00000101181.5	chrX	+	1977	7	FSM	ENSMUSG00000072923.7	ENSMUST00000101181.5	1977	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.06622805119022	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	148377565	148419760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_148377658_148394767_148394894_148395612_148395693_148399354_148400266_148411437_148411520_148412325_148412376_148419124
ENSMUST00000101185.10	chrX	+	2023	7	FSM	ENSMUSG00000079387.11	ENSMUST00000101185.10	2023	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.77413381096719	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	147640635	147707135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_147640726_147686432_147686559_147687278_147687359_147690981_147691941_147698819_147698902_147699707_147699758_147706499
ENSMUST00000101212.9	chrX	-	1996	9	FSM	ENSMUSG00000072944.12	ENSMUST00000101212.9	1996	9	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_8	135.330151850946	1306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	-9	True	AATAAA	-16	NA	138963317	138907553	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963161
ENSMUST00000101249.9	chr11	-	2013	7	FSM	ENSMUSG00000020358.18	ENSMUST00000101249.9	2013	7	0	0	0	0	multi-exon	FALSE	canonical	3	1798	junction_1	519.070135488024	27740	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGGTAAATGTGGGATG	NA	False	NA	-17	True	AATAAA	-22	NA	51497674	51491695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_51492718_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166_51497414_51497493
ENSMUST00000101250.12	chr11	+	2225	13	FSM	ENSMUSG00000020359.14	ENSMUST00000101250.12	2225	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	10.2225241501304	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTATTTACTTCTAAGAC	NA	False	NA	NA	False	ATTAAA	-15	NA	51475583	51494081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_51475707_51476340_51476460_51477387_51477548_51482225_51482301_51482832_51482921_51482995_51483113_51483739_51483855_51484430_51484969_51489102_51489258_51489477_51489568_51490292_51490424_51491395_51491450_51493621
ENSMUST00000101251.8	chrX	+	3085	22	FSM	ENSMUSG00000031262.13	ENSMUST00000101251.8	3085	22	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	51.4515821537341	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTATTTCCGAATTTTT	NA	False	NA	3	True	AATAAA	-14	NA	133208903	133263385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_133208978_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
ENSMUST00000101293.11	chr11	+	2729	3	FSM	ENSMUSG00000020346.17	ENSMUST00000101293.11	2729	3	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_1	25.5	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGTGTGTCCTAGG	NA	False	NA	NA	False	AATAAA	-27	NA	49141338	49153857	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_49141483_49142376_49142502_49151397
ENSMUST00000101340.11	chr11	-	700	6	FSM	ENSMUSG00000020415.17	ENSMUST00000101340.11	700	6	0	0	0	0	multi-exon	FALSE	canonical	3	4089	junction_5	2240.31940579909	24475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGATTGTGAATACTTA	NA	False	NA	-31	True	AATAAA	-15	NA	43317029	43311095	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317000
ENSMUST00000101343.2	chr6	+	1725	5	FSM	ENSMUSG00000029910.15	ENSMUST00000101343.2	1725	5	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_4	68.2692280606717	977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAAATCAAGCTTTAAAA	NA	False	NA	19	True	AATAAA	-22	NA	66512451	66517975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754
ENSMUST00000101347.10	chr11	-	2053	7	FSM	ENSMUSG00000042032.14	ENSMUST00000101347.10	2053	7	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_6	83.011378068846	2253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40586030	40570140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40585629
ENSMUST00000101354.10	chr5	-	1578	7	FSM	ENSMUSG00000004642.14	ENSMUST00000101354.10	1578	7	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_4	432.7992863005	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCCTATACTGTTTGG	NA	False	NA	-4	True	AATAAA	-22	NA	33809650	33797398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33807086_33807192_33809306_33809424_33809538
ENSMUST00000101362.8	chrX	-	2371	13	FSM	ENSMUSG00000031297.15	ENSMUST00000101362.8	2371	13	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_12	497.596780089618	926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACCAAAAAACCT	NA	False	NA	NA	False	ATTAAA	-12	NA	100128958	100122826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128426_100128585_100128877
ENSMUST00000101367.9	chr6	-	1519	10	FSM	ENSMUSG00000029780.15	ENSMUST00000101367.9	1519	10	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_9	89.8419737478734	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTTGTCCAGATCATAT	9834	False	NA	0	True	AATAAA	-26	NA	56878871	56859384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56874759_56874815_56878822
ENSMUST00000101375.5	chr11	-	966	10	FSM	ENSMUSG00000057113.14	ENSMUST00000101375.5	966	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	6470.30156337304	5016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCTGGTGTCACTGA	NA	False	NA	-7	True	ATTAAA	-11	NA	33113076	33105327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_33105432_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUST00000101394.5	chr11	-	1315	3	FSM	ENSMUSG00000020309.7	ENSMUST00000101394.5	1315	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	6	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTAAGTGTCATTTCT	NA	False	NA	NA	False	AATAAA	-33	NA	30936350	30926706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_30927747_30929564_30929601_30936111
ENSMUST00000101486.5	chrX	+	1564	9	FSM	ENSMUSG00000073125.11	ENSMUST00000101486.5	1564	9	0	0	0	0	multi-exon	FALSE	canonical	3	836	junction_5	296.174779479955	2893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTCAGACTTGTTGGCA	NA	False	NA	NA	False	AATAAA	-8	NA	72235827	72246526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241077_72241891_72241992_72243351_72243451_72245455_72245552_72245645
ENSMUST00000101504.3	chr4	+	2053	6	FSM	ENSMUSG00000059482.16	ENSMUST00000101504.3	2053	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	54.3485050392373	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTCTCTGTGCAATTAT	-5	True	NA	15	True	AATAAA	-19	NA	10874567	10899425	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_10874773_10879522_10879611_10881800_10881869_10882406_10882473_10893262_10893359_10897895
ENSMUST00000101506.10	chrX	-	2429	6	FSM	ENSMUSG00000073139.10	ENSMUST00000101506.10	2429	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	81.8300678235085	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520786	69503358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69510759_69510968_69513723_69513901_69520583
ENSMUST00000101525.9	chr11	+	1157	9	FSM	ENSMUSG00000020407.14	ENSMUST00000101525.9	1157	9	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	904.856126339983	10678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGACTCTGCGGTAGA	NA	False	NA	26	True	AATAAA	-20	NA	9068106	9086170	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_9068163_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ENSMUST00000101526.9	chr11	+	1706	5	FSM	ENSMUSG00000018572.11	ENSMUST00000101526.9	1706	5	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	201.26273251648	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCTTGTCCTATTTGG	2416	False	NA	16	True	AATAAA	-26	NA	69886701	69890835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889327_69889959_69890063
ENSMUST00000101547.12	chr13	-	2147	4	FSM	ENSMUSG00000074865.12	ENSMUST00000101547.12	2147	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	18.9267594221045	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGTGTGTGGACCAGT	NA	False	NA	NA	False	NA	NA	NA	62706325	62664610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_62666545_62667985_62668047_62668231_62668359_62706300
ENSMUST00000101561.8	chrX	-	951	8	FSM	ENSMUSG00000073177.9	ENSMUST00000101561.8	951	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	4.42165358301205	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGATTTTTTGCAATGTTA	NA	False	NA	NA	False	AATAAA	-19	NA	55258241	55235186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_55235530_55239012_55239112_55241930_55242031_55242833_55242952_55246943_55246979_55247366_55247437_55248032_55248151_55258173
ENSMUST00000101588.2	chrX	+	1536	2	FSM	ENSMUSG00000073207.2	ENSMUST00000101588.2	1536	2	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	0	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATATGCCTGTGATTC	NA	False	NA	NA	False	AATAAA	-23	NA	51880076	51888345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_51880203_51886935
ENSMUST00000101615.9	chr11	+	2116	19	FSM	ENSMUSG00000034274.12	ENSMUST00000101615.9	2116	19	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	70.0920030309371	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTTTGTAGCTCCTTGG	NA	False	NA	23	True	ATTAAA	-20	NA	4845319	4878867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_4845379_4849790_4849907_4852085_4852200_4852334_4852433_4854094_4854242_4855640_4855756_4860626_4860760_4862780_4862859_4864269_4864311_4864521_4864622_4865488_4865598_4868123_4868226_4869732_4869830_4870376_4870492_4871921_4872026_4872138_4872227_4874747_4874864_4876045_4876237_4878674
ENSMUST00000101636.3	chrX	-	817	4	FSM	ENSMUSG00000073243.3	ENSMUST00000101636.3	817	4	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_3	3.74165738677394	642	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGCAAATTGAACAAATTTA	NA	False	NA	NA	False	ATTAAA	-12	NA	36474694	36473000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_36473184_36473576_36473674_36473912_36474226_36474470
ENSMUST00000101644.10	chr11	+	1853	4	FSM	ENSMUSG00000020453.18	ENSMUST00000101644.10	1853	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	164.248456782874	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	5180	False	NA	14	True	ATTAAA	-16	NA	3239166	3259083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_3239348_3243279_3243344_3249033_3249206_3257647
ENSMUST00000101645.10	chrX	+	928	9	FSM	ENSMUSG00000073245.11	ENSMUST00000101645.10	928	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	3.49106001094224	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	34667835	34690746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_34667977_34669420_34669544_34675151_34675219_34675757_34675793_34678902_34679029_34679340_34679405_34687606_34687689_34690137_34690237_34690555
ENSMUST00000101800.7	chr17	+	1211	4	FSM	ENSMUSG00000075705.14	ENSMUST00000101800.7	1211	4	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_3	11.8602979164381	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGTTTCCGTGTTTGTTG	NA	False	NA	12	True	AATAAA	-12	NA	24955655	24961745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24955737_24958472_24958622_24959053_24959169_24960879
ENSMUST00000101801.8	chr7	+	1191	6	FSM	ENSMUSG00000075701.11	ENSMUST00000101801.8	1191	6	0	0	0	0	multi-exon	FALSE	canonical	3	410	junction_5	18.3804243694209	2498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACAGTCTCTGGTTTTTCTT	NA	False	NA	7	True	AGTAAA	-16	NA	65729396	65739153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_65729538_65730079_65730215_65733147_65733255_65736694_65736785_65736940_65737020_65738514
ENSMUST00000102476.5	chr2	+	860	4	FSM	ENSMUSG00000060802.9	ENSMUST00000102476.5	860	4	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_2	12.4721912892465	982	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATTG	NA	False	NA	NA	False	NA	NA	NA	121978166	121983564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_121978286_121981353_121981633_121982127_121982157_121983131
ENSMUST00000102483.5	chr11	-	560	5	FSM	ENSMUSG00000058546.9	ENSMUST00000102483.5	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	10927	junction_1	3598.81438810061	157367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	5963	False	NA	-14	True	CATAAA	-1	NA	78074410	78071760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_78071824_78071979_78072050_78072242_78072420_78073628_78073813_78074344
ENSMUST00000102497.10	chr2	-	1962	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102497.10	1962	6	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_5	44.5394207416307	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	120439836	120434718	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439595
ENSMUST00000102499.8	chr2	-	1961	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102499.8	1961	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	57.8321709777525	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	120440001	120434718	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439761
ENSMUST00000102500.5	chr11	-	3540	2	FSM	ENSMUSG00000049396.7	ENSMUST00000102500.5	3540	2	0	0	0	0	multi-exon	FALSE	canonical	3	437	junction_1	0	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAGCCTTTCTCAGAAG	NA	False	NA	-1	True	AATAAA	-22	NA	76108490	76101396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_76104750_76108303
ENSMUST00000102503.10	chr4	-	1221	8	FSM	ENSMUSG00000028741.14	ENSMUST00000102503.10	1221	8	0	0	0	0	multi-exon	FALSE	canonical	3	786	junction_5	119.708489460771	7669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTTTTTTTGTTGTTT	5696	False	NA	-2	True	AATAAA	-44	NA	139079887	139074745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_139075117_139075231_139075309_139075631_139075784_139075992_139076061_139076316_139076399_139076924_139077029_139077746_139077806_139079579
ENSMUST00000102508.10	chr4	+	1674	9	FSM	ENSMUSG00000028745.19	ENSMUST00000102508.10	1674	9	0	0	0	0	multi-exon	FALSE	canonical	3	1402	junction_1	117.624136553685	14085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGCGCTGGCTGTACGTTC	NA	False	NA	8	True	NA	NA	NA	138920209	139019129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
ENSMUST00000102512.11	chr4	-	1976	5	FSM	ENSMUSG00000041193.16	ENSMUST00000102512.11	1976	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	9.4339811320566	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTTTTGGTGTATGCTA	NA	False	NA	0	True	AATAAA	-29	NA	138546566	138526554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_138527973_138528662_138528770_138531817_138531963_138533495_138533546_138546310
ENSMUST00000102525.11	chr5	+	899	7	FSM	ENSMUSG00000029465.15	ENSMUST00000102525.11	899	7	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_4	26.4638117687784	9196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACACTGTACCGTGTATG	4488	False	NA	38	True	ATTAAA	-22	NA	122529940	122544242	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_122530061_122534879_122534980_122539709_122539787_122541421_122541491_122542186_122542314_122543146_122543242_122543931
ENSMUST00000102533.11	chr4	+	1251	11	FSM	ENSMUSG00000001604.15	ENSMUST00000102533.11	1251	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	231.929816970565	1961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGCTGAGCCCTGGAT	6603	False	NA	15	True	AATAAA	-26	NA	135975262	136002209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_135975429_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992240_135995319_135995475_135998543_135998691_136000954_136001027_136002090
ENSMUST00000102536.11	chr4	-	833	6	FSM	ENSMUSG00000059291.16	ENSMUST00000102536.11	833	6	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_1	3915.89487090754	286745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGGTTTGGATTTGGTTG	NA	False	NA	-59	True	NA	NA	NA	135780704	135777041	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658
ENSMUST00000102541.10	chr4	+	1430	11	FSM	ENSMUSG00000028671.17	ENSMUST00000102541.10	1430	11	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	18.7712546197637	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGATTCTCACAGATGGC	4562	False	NA	11	True	AATAAA	-19	NA	135691037	135695489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_135691100_135692644_135692768_135692876_135692993_135693313_135693428_135693680_135693858_135694123_135694238_135694322_135694390_135694481_135694568_135694662_135694741_135694899_135695015_135695111
ENSMUST00000102542.10	chr2	-	2734	9	FSM	ENSMUSG00000057147.14	ENSMUST00000102542.10	2734	9	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_3	18.9670767383907	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTTTTGTGTGAATGTC	NA	False	NA	-6	True	NA	NA	NA	114485445	114346900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_114348774_114350192_114350281_114353524_114353620_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
ENSMUST00000102550.10	chr4	-	2025	7	FSM	ENSMUSG00000046671.19	ENSMUST00000102550.10	2025	7	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_6	159.506530691797	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGTTCATCTCTGAGT	NA	False	NA	7	True	ATTAAA	-30	NA	134262579	134252860	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262392
ENSMUST00000102553.11	chr4	-	1265	6	FSM	ENSMUSG00000003038.16	ENSMUST00000102553.11	1265	6	0	0	0	0	multi-exon	FALSE	canonical	3	1307	junction_3	652.309558415328	11880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCTGATCTTTCCCA	NA	False	NA	NA	False	AATAAA	-25	NA	133695312	133692048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133695105
ENSMUST00000102561.11	chr4	+	1813	9	FSM	ENSMUSG00000028884.15	ENSMUST00000102561.11	1813	9	0	0	0	0	multi-exon	FALSE	canonical	3	1317	junction_7	93.1791788706039	6471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCGCCCCTGGCCGTGCT	NA	False	NA	7	True	AGTAAA	-24	NA	132495645	132506063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503558_132503667_132503963_132504059_132505100
ENSMUST00000102564.11	chr11	+	1848	15	FSM	ENSMUSG00000060216.16	ENSMUST00000102564.11	1848	15	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_13	22.0579015413562	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGCTATGCCAGTGTTC	NA	False	NA	8	True	AATAAA	-14	NA	70323478	70331620	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989
ENSMUST00000102567.4	chr4	-	1675	3	FSM	ENSMUSG00000066042.5	ENSMUST00000102567.4	1675	3	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_2	8.5	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGTGATTCTGATTCT	1047	False	NA	-15	True	AATAAA	-13	NA	132191232	132186041	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132187425_132190175_132190320_132191084
ENSMUST00000102569.10	chr11	-	778	5	FSM	ENSMUSG00000020831.19	ENSMUST00000102569.10	778	5	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_3	164.364495862093	1028	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70126291_70126521_70126627_70126849_70127038_70128356_70128452_70128609
ENSMUST00000102576.4	chr4	+	2001	8	FSM	ENSMUSG00000040533.8	ENSMUST00000102576.4	2001	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	5.36808406515884	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGAATTAGTGGTGGTGA	1491	False	NA	NA	False	AATAAA	-32	NA	130671695	130682786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_130671841_130673139_130673487_130677245_130677469_130678599_130678726_130679149_130679567_130680143_130680297_130681646_130681728_130682277
ENSMUST00000102580.10	chr11	-	1640	9	FSM	ENSMUSG00000018570.18	ENSMUST00000102580.10	1640	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.57647321898295	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTGCTGGGAGCTGCG	9726	False	NA	-13	True	AATAAA	-15	NA	69791783	69788188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69788319_69788444_69788581_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790637_69791128
ENSMUST00000102581.11	chr5	-	3103	7	FSM	ENSMUSG00000001098.16	ENSMUST00000102581.11	3103	7	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_4	16.3401346383682	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGCCTTCTGGTCTTTTCG	NA	False	NA	2	True	AATAAA	-24	NA	114518569	114501627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_114503928_114505269_114505466_114506402_114506456_114507001_114507089_114508119_114508290_114512956_114513171_114518486
ENSMUST00000102584.11	chr5	+	2136	6	FSM	ENSMUSG00000029591.15	ENSMUST00000102584.11	2136	6	0	0	0	0	multi-exon	FALSE	canonical	3	690	junction_3	32.487536071546	3251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGTGCCGACTATTCTT	NA	False	NA	21	True	AATAAA	-17	NA	114268986	114277382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
ENSMUST00000102588.10	chr4	-	1810	9	FSM	ENSMUSG00000053730.16	ENSMUST00000102588.10	1810	9	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_6	5.99869777535091	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTGTGTCCTGTGATT	9992	False	NA	NA	False	AAAAAG	-21	NA	129590631	129570147	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586858_129587079_129587678_129587806_129590507
ENSMUST00000102591.10	chr4	+	1437	5	FSM	ENSMUSG00000028797.21	ENSMUST00000102591.10	1437	5	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_2	181.287582310538	1469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3176	False	NA	16	True	AATAAA	-16	NA	129494472	129502321	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129494525_129494775_129494928_129495987_129496055_129500879_129500973_129501248
ENSMUST00000102593.11	chr4	-	1123	11	FSM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	0	0	0	0	multi-exon	FALSE	canonical	3	822	junction_10	179.667915889287	14551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTGCAGCCTGTCTGT	6377	False	NA	0	True	AATAAA	-32	NA	129494441	129485752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
ENSMUST00000102597.5	chr4	-	2038	14	FSM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	0	0	0	0	multi-exon	FALSE	canonical	3	1463	junction_10	202.513203601978	5453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTGGTTGGTTTAAGTT	8808	False	NA	-5	True	AATAAA	-22	NA	129436506	129409896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
ENSMUST00000102601.10	chr11	+	759	4	FSM	ENSMUSG00000049299.15	ENSMUST00000102601.10	759	4	0	0	0	0	multi-exon	FALSE	canonical	3	452	junction_2	10.7082522694727	2625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	16	True	AATAAA	-25	NA	69214888	69216619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69215083_69215220_69215292_69215649_69215789_69216264
ENSMUST00000102602.8	chr11	+	751	5	FSM	ENSMUSG00000049299.15	ENSMUST00000102602.8	751	5	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	97.8682149627753	2764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	16	True	AATAAA	-25	NA	69214805	69216619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69214893_69214983_69215083_69215220_69215292_69215649_69215789_69216264
ENSMUST00000102604.11	chr4	+	1781	7	FSM	ENSMUSG00000028792.15	ENSMUST00000102604.11	1781	7	0	0	0	0	multi-exon	FALSE	canonical	3	1917	junction_3	122.234746833023	10731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTTGTGGAGTTTTTT	2869	False	NA	29	True	AATAAA	-19	NA	128887016	128905322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826_128902023_128904355
ENSMUST00000102606.10	chr11	+	1828	5	FSM	ENSMUSG00000018740.15	ENSMUST00000102606.10	1828	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	4.96865172858795	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAAGTGTCTTATGTTTA	5558	False	NA	6	True	CATAAA	-18	NA	68858956	68863342	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_68859864_68861549_68861616_68862009_68862163_68862494_68862630_68862775
ENSMUST00000102616.8	chr4	-	1542	11	FSM	ENSMUSG00000028845.16	ENSMUST00000102616.8	1542	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	4.52658811910251	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGGCTCTTTTCTGCTAC	3091	False	NA	NA	False	AATAAA	-15	NA	126219481	126215913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_126216213_126216364_126216445_126216612_126216757_126216912_126217021_126217149_126217265_126217431_126217576_126218022_126218229_126218386_126218513_126218595_126218802_126218926_126218997_126219437
ENSMUST00000102617.5	chr4	-	1672	6	FSM	ENSMUSG00000042558.17	ENSMUST00000102617.5	1672	6	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_3	41.9218320210365	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGTCCTGTTCCTGTCTC	7076	False	NA	NA	False	AATAAA	-20	NA	126215496	126209839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_126210659_126211095_126211197_126211512_126211698_126211776_126211985_126212191_126212289_126215234
ENSMUST00000102621.11	chr3	-	2419	19	FSM	ENSMUSG00000027882.19	ENSMUST00000102621.11	2419	19	0	0	0	0	multi-exon	FALSE	canonical	1	38	junction_10	22.0233461984726	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGAGTTTTTCTTTCT	NA	False	NA	3	True	AATAAA	-17	NA	108747827	108700491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_108701181_108702117_108702270_108704696_108704783_108706539_108706633_108707370_108707478_108708050_108708190_108709426_108709508_108710861_108710928_108712373_108712432_108712553_108712650_108717192_108717318_108720193_108720285_108723640_108723796_108729103_108729205_108729830_108729910_108733321_108733399_108734341_108734424_108734888_108734939_108747735
ENSMUST00000102625.11	chr3	-	1866	12	FSM	ENSMUSG00000068739.14	ENSMUST00000102625.11	1866	12	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	974.241336537401	8688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGCTTCCCCAGTCTCC	NA	False	NA	-39	True	AATAAA	-18	NA	108352485	108333927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_108334298_108334575_108334706_108335176_108335249_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
ENSMUST00000102629.8	chr3	+	1687	8	FSM	ENSMUSG00000068744.13	ENSMUST00000102629.8	1687	8	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_1	112.452983372553	1745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAGCTCTCAGACATAGG	7052	False	NA	68	True	AATAAA	-16	NA	108291174	108295547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_108291212_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
ENSMUST00000102642.9	chr2	+	1560	4	FSM	ENSMUSG00000027078.15	ENSMUST00000102642.9	1560	4	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_3	17.1075032271418	4402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCAGAAGTCGGACTTCA	NA	False	NA	NA	False	GATAAA	-13	NA	84629171	84640520	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_84629277_84633122_84633219_84636680_84636868_84639348
ENSMUST00000102645.4	chr2	+	2059	5	FSM	ENSMUSG00000027080.7	ENSMUST00000102645.4	2059	5	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_3	24.2525771826418	1942	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGGCTGGAGTCTTCCCT	3357	False	NA	12	True	AATAAA	-21	NA	84508745	84518559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_84509006_84515534_84515792_84515946_84516044_84516534_84516630_84517209
ENSMUST00000102646.4	chr2	-	783	3	FSM	ENSMUSG00000076437.12	ENSMUST00000102646.4	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	2216	junction_1	111	1664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTACTTGTAGTTAAGGTT	369	False	NA	NA	False	AATAAA	-15	NA	84501041	84500038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84500461_84500588_84500735_84500826
ENSMUST00000102647.11	chr2	-	654	4	FSM	ENSMUSG00000076437.12	ENSMUST00000102647.11	654	4	0	0	0	0	multi-exon	FALSE	canonical	3	329	junction_1	946.216677088287	29267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAGCAAGTTTAAATTT	358	False	NA	-14	True	AATAAA	-19	NA	84501052	84499564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84499742_84500355_84500461_84500588_84500735_84500826
ENSMUST00000102649.4	chr4	+	2074	11	FSM	ENSMUSG00000028653.17	ENSMUST00000102649.4	2074	11	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	10.336343647538	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGCTGCATTGTCAAT	NA	False	NA	26	True	AATAAA	-30	NA	122910389	122948742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122940667_122940811_122942561_122942674_122942944_122943058_122943269_122943348_122945858_122945969_122946276_122946395_122947915
ENSMUST00000102657.10	chr11	+	817	7	FSM	ENSMUSG00000001039.13	ENSMUST00000102657.10	817	7	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_4	19.5739339144917	2528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCCTTCATTTCTTG	NA	False	NA	23	True	AATAAA	-23	NA	61395969	61403757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_61396098_61397169_61397239_61398453_61398566_61399897_61399995_61400295_61400359_61403197_61403266_61403477
ENSMUST00000102672.5	chr2	-	2475	5	FSM	ENSMUSG00000015839.7	ENSMUST00000102672.5	2475	5	0	0	0	0	multi-exon	FALSE	canonical	3	494	junction_1	38.2058568808501	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGACTTTTTGAATTTA	NA	False	NA	1	True	AATAAA	-22	NA	75534985	75505856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
ENSMUST00000102673.11	chr4	+	1248	7	FSM	ENSMUSG00000006390.16	ENSMUST00000102673.11	1248	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	45.4376862673853	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGATTGTGTGTGTGTG	NA	False	NA	1	True	ATTAAA	-14	NA	118285321	118289810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_118285413_118287692_118287753_118288259_118288341_118288462_118288520_118288605_118288712_118288793_118288931_118289094
ENSMUST00000102687.4	chr4	-	1566	11	FSM	ENSMUSG00000009640.12	ENSMUST00000102687.4	1566	11	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_10	49.3527101586124	1152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTGTTTCCTCACTTCC	NA	False	NA	-35	True	AATAGA	-20	NA	117539470	117531877	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539180_117539410
ENSMUST00000102691.11	chr2	+	2424	9	FSM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_3	87.0351042683353	2731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTTTATTTTTGTTT	8569	False	NA	NA	False	AATAAA	-16	NA	72306502	72317237	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
ENSMUST00000102693.9	chr11	-	961	7	FSM	ENSMUSG00000000301.17	ENSMUST00000102693.9	961	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	8.67307455417179	247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTGGTCTCCTTCCCA	NA	False	NA	1	True	AATAAA	-19	NA	59937307	59861439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_59861702_59862009_59862085_59864893_59865006_59867664_59867811_59874268_59874385_59922538_59922647_59937165
ENSMUST00000102695.4	chr11	+	1306	5	FSM	ENSMUSG00000032615.15	ENSMUST00000102695.4	1306	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	9.12414379544733	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCTGTGGCCTTCTC	1719	False	NA	6	True	AATAAA	-16	NA	59738898	59767359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_59739199_59743616_59743718_59751575_59751637_59765378_59765494_59766630
ENSMUST00000102696.5	chr4	-	860	6	FSM	ENSMUSG00000047675.16	ENSMUST00000102696.5	860	6	0	0	0	0	multi-exon	FALSE	canonical	3	8358	junction_5	1894.95893359197	178489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTTTGGAGAGGCTGG	NA	False	NA	-13	True	AATAAA	-30	NA	117013440	117011023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_117011185_117011495_117011626_117011834_117012011_117012204_117012305_117012767_117012875_117013254
ENSMUST00000102699.8	chr4	+	1654	16	FSM	ENSMUSG00000028687.18	ENSMUST00000102699.8	1654	16	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	29.5893374188894	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664919	116676628	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
ENSMUST00000102704.4	chr4	-	3025	18	FSM	ENSMUSG00000028702.16	ENSMUST00000102704.4	3025	18	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_11	50.1315225199974	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980856	115954171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258
ENSMUST00000102705.10	chr4	-	2780	19	FSM	ENSMUSG00000028702.16	ENSMUST00000102705.10	2780	19	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_18	87.8901706606913	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTGGTGTTAGGCATTC	NA	False	NA	4	True	NA	NA	NA	115980882	115954112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980675
ENSMUST00000102727.3	chr11	-	2471	25	FSM	ENSMUSG00000018340.14	ENSMUST00000102727.3	2471	25	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_5	83.6892399827414	1987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	-4	True	NA	NA	NA	54924271	54869933	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
ENSMUST00000102738.4	chr4	+	1629	1	FSM	ENSMUSG00000073775.5	ENSMUST00000102738.4	1629	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	664	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGGTCTCTTGATGTA	NA	False	NA	9	True	AATAAA	-15	NA	108704981	108706610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_108705000_108706600
ENSMUST00000102744.4	chr4	+	3014	17	FSM	ENSMUSG00000028587.19	ENSMUST00000102744.4	3014	17	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_7	60.5103296966724	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGGTATGGTTTGGGGT	5272	False	NA	21	True	NA	NA	NA	108436650	108472030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
ENSMUST00000102746.11	chr7	+	2579	17	Antisense	novelGene_ENSMUSG00000052997.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGGGAAGGGCAGCGCAG	NA	False	NA	NA	False	NA	NA	NA	33840112	33868000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr7_+_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
ENSMUST00000102747.8	chr2	+	2271	11	FSM	ENSMUSG00000026977.18	ENSMUST00000102747.8	2271	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	141.271405457722	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGATCTGTGAACATGTT	NA	False	NA	NA	False	AAGAAA	-11	NA	60040416	60078317	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_60040429_60055113_60055215_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
ENSMUST00000102748.11	chr2	+	3594	10	FSM	ENSMUSG00000026977.18	ENSMUST00000102748.11	3594	10	0	0	0	0	multi-exon	FALSE	canonical	3	327	junction_5	27.2519112479596	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAACTTTTTCCTTTTA	NA	False	NA	27	True	AATAAA	-24	NA	60040230	60079555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
ENSMUST00000102758.8	chr11	+	2022	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	0	0	0	0	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	9172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5131	False	NA	30	True	AATAAA	-26	NA	52251686	52280224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
ENSMUST00000102763.5	chr11	+	1832	3	FSM	ENSMUSG00000020392.9	ENSMUST00000102763.5	1832	3	0	0	0	0	multi-exon	FALSE	canonical	3	1066	junction_1	20	4131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTAGGTTCAAGTTGTGT	NA	False	NA	NA	False	AATAAA	-20	NA	51858487	51868161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_51858785_51860970_51861071_51866726
ENSMUST00000102767.8	chr2	-	2057	5	FSM	ENSMUSG00000036249.17	ENSMUST00000102767.8	2057	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	2.77263412660235	516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGAGCTGCATCATTATT	NA	False	NA	NA	False	ATTAAA	-1	NA	51825019	51814459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_51815947_51816692_51816773_51819671_51819862_51822411_51822536_51824843
ENSMUST00000102769.11	chr2	-	1342	8	FSM	ENSMUSG00000026766.17	ENSMUST00000102769.11	1342	8	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_7	76.2190720146573	2847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186729	50169892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263_50186322_50186654
ENSMUST00000102774.11	chr11	-	2037	8	FSM	ENSMUSG00000015837.16	ENSMUST00000102774.11	2037	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	263.494104027287	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGTGATCCGTACGAGT	NA	False	NA	-14	True	AATAAA	-22	NA	50101654	50090978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_50091775_50093225_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
ENSMUST00000102782.4	chr1	+	445	1	FSM	ENSMUSG00000078193.3	ENSMUST00000102782.4	445	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	74012	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	156193609	156194054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_156193600_156194100
ENSMUST00000102786.11	chr4	-	716	8	FSM	ENSMUSG00000028549.18	ENSMUST00000102786.11	716	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	75.5961342279093	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGTATGGAGCTCAGAG	NA	False	NA	58	True	NA	NA	NA	99717329	99655567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99690333_99690470_99702294_99702338_99717319
ENSMUST00000102793.11	chr4	-	1027	7	FSM	ENSMUSG00000028563.17	ENSMUST00000102793.11	1027	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	212.976328888134	2839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTGACCTGTTATTAA	NA	False	NA	-4	True	AATAAA	-18	NA	98271543	98243606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_98243918_98246154_98246285_98253799_98253874_98258728_98258821_98263156_98263266_98268854_98268929_98271306
ENSMUST00000102795.4	chr11	-	2088	11	FSM	ENSMUSG00000041231.16	ENSMUST00000102795.4	2088	11	0	0	0	0	multi-exon	FALSE	canonical	2	61	junction_9	50.7897627480184	708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTTATCTGTTTTATAAT	NA	False	NA	NA	False	AATAAA	-18	NA	44361325	44345397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_44346443_44347190_44347319_44349031_44349149_44351547_44351647_44352145_44352184_44354484_44354584_44356191_44356308_44356384_44356471_44356822_44356915_44357641_44357839_44361254
ENSMUST00000102811.10	chr2	+	729	7	FSM	ENSMUSG00000038900.18	ENSMUST00000102811.10	729	7	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_1	2477.85254246943	26445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGGCTTGGCTGCTTTTT	5822	False	NA	22	True	AATAAA	-21	NA	32851751	32854055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
ENSMUST00000102814.5	chr4	-	878	5	FSM	ENSMUSG00000028495.15	ENSMUST00000102814.5	878	5	0	0	0	0	multi-exon	FALSE	canonical	3	14010	junction_1	3685.72343645043	304233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	86775649	86772896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775557
ENSMUST00000102840.5	chr2	+	1696	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	0	0	0	0	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	11775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTCTGCGTGTGTGCC	NA	False	NA	27	True	ATTAAA	-22	NA	31360218	31410684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
ENSMUST00000102844.4	chr11	+	637	5	Antisense	novelGene_ENSMUSG00000020460.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	509789	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGATCCGAGCGTGGCCG	NA	False	NA	NA	False	NA	NA	NA	29495845	29497860	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr11_+_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680
ENSMUST00000102845.11	chr11	-	791	6	FSM	ENSMUSG00000020460.16	ENSMUST00000102845.11	791	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5362.30439270282	536489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	-31	True	AATAAA	-16	NA	29498109	29495845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680_29497746_29497840
ENSMUST00000102856.9	chr11	+	2410	12	FSM	ENSMUSG00000020463.16	ENSMUST00000102856.9	2410	12	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_3	30.8097333552481	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTTTATTCTTACTT	NA	False	NA	NA	False	AATAAA	-19	NA	29122889	29159641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316
ENSMUST00000102865.11	chr2	-	1165	5	FSM	ENSMUSG00000015335.17	ENSMUST00000102865.11	1165	5	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_1	34.0917878674616	2565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGTGGACTCTTTCC	NA	False	NA	-3	True	ATTAAA	-16	NA	29983660	29980955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_29981579_29981678_29981846_29981999_29982078_29982416_29982554_29983500
ENSMUST00000102866.10	chr2	+	2824	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	0	0	0	0	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	41683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTCATTCTCCTTGTT	NA	False	NA	19	True	AATAAA	-24	NA	29951864	29962589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
ENSMUST00000102898.5	chr2	+	914	8	FSM	ENSMUSG00000062647.17	ENSMUST00000102898.5	914	8	0	0	0	0	multi-exon	FALSE	canonical	3	2861	junction_1	795.089880684786	34475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26800775	26803330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_26800843_26801017_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
ENSMUST00000102915.10	chr4	+	5404	25	FSM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_1	46.9361083164006	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTAGTACTACAGTTT	-19	True	NA	21	True	ATTAAA	-21	NA	52439242	52488260	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_52439411_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261_52457496_52458414_52458575_52459020_52459139_52460157_52460297_52461049_52461170_52462802_52463008_52465932_52466069_52467789_52467915_52469771_52469966_52470765_52470910_52474920_52475116_52476643_52476845_52478395_52478513_52481669_52481831_52484039_52484188_52486496
ENSMUST00000102921.4	chr11	-	590	7	FSM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_6	30.6671195618731	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTGTTGGCTTGACTG	NA	False	NA	2	True	AATAAA	-20	NA	5848782	5846636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831_5847937_5848159_5848236_5848425_5848540_5848760
ENSMUST00000102922.10	chr11	-	1646	11	FSM	ENSMUSG00000020471.12	ENSMUST00000102922.10	1646	11	0	0	0	0	multi-exon	FALSE	canonical	3	869	junction_10	541.870242770352	4142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTTCACTTGGGCATGT	9505	False	NA	2	True	AATAAA	-25	NA	5828292	5822179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
ENSMUST00000102928.5	chr11	+	2295	13	FSM	ENSMUSG00000020476.15	ENSMUST00000102928.5	2295	13	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_7	84.6740072277201	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATATAACTGATGTCAG	NA	False	NA	-2	True	NA	NA	NA	5738529	5750962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747283_5747336_5747626_5747721_5748015_5748112_5748215_5748326_5749233_5749340_5749859
ENSMUST00000102930.10	chr11	-	2174	18	FSM	ENSMUSG00000009079.17	ENSMUST00000102930.10	2174	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	1623.90424701095	2169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCTGAGTTTTTTTTTG	NA	False	NA	NA	False	ATTAAA	-16	NA	5049042	5019896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041459_5041478_5041858_5041983_5043680_5043733_5043868_5043906_5049008
ENSMUST00000102943.2	chr13	-	1187	1	FSM	ENSMUSG00000076430.2	ENSMUST00000102943.2	1187	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTGAAACAATTATTGTAT	NA	False	NA	NA	False	AATAAA	-15	NA	31131742	31130555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_31130600_31131700
ENSMUST00000102955.11	chr3	-	1064	5	FSM	ENSMUSG00000045031.19	ENSMUST00000102955.11	1064	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	3.41869858279434	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTATCTTCTGGTAGT	NA	False	NA	NA	False	AATAAA	-21	NA	37366595	37362770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_37363331_37363493_37363632_37364085_37364215_37364441_37364589_37366505
ENSMUST00000102973.4	chr4	+	3832	21	FSM	ENSMUSG00000028405.10	ENSMUST00000102973.4	3832	21	0	0	0	0	multi-exon	TRUE	canonical	3	234	junction_5	35.2306684580353	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGGCTTTGGAGTTGA	-13	True	NA	9	True	ATTAAA	-17	NA	40143080	40198338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_40143542_40163718_40163846_40164608_40164778_40167053_40167192_40175664_40175735_40175841_40176026_40176495_40176636_40177778_40177951_40178972_40179074_40180171_40180289_40181382_40181543_40182803_40182940_40183567_40183653_40184900_40185058_40186315_40186441_40188165_40188271_40189343_40189487_40190736_40190885_40193738_40193862_40196244_40196431_40197553
ENSMUST00000102980.11	chr6	-	1387	10	FSM	ENSMUSG00000001642.19	ENSMUST00000102980.11	1387	10	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_4	199.673498924718	9360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTGGTGGTCCGTTTTG	NA	False	NA	-5	True	AATAAA	-16	NA	34294413	34280868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_34281275_34283474_34283558_34285913_34285998_34286510_34286593_34286895_34287003_34287447_34287571_34287859_34287938_34288856_34288974_34289574_34289743_34294274
ENSMUST00000102981.10	chr2	-	2448	12	FSM	ENSMUSG00000025816.16	ENSMUST00000102981.10	2448	12	0	0	0	0	multi-exon	TRUE	canonical	3	221	junction_3	37.3630833845388	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGTGTTCTCTAAGAGT	NA	False	NA	-17	True	AATAAA	-10	NA	5900243	5875797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_5876833_5878553_5878631_5879037_5879230_5881174_5881373_5881651_5881813_5882665_5882820_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
ENSMUST00000102988.10	chr2	+	2469	14	FSM	ENSMUSG00000026648.19	ENSMUST00000102988.10	2469	14	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	4.46419019339905	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAACAGGCTCAAAACCA	1021	False	NA	NA	False	NA	NA	NA	3425186	3455129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3437474_3437531_3438025_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110_3448200_3451315_3451411_3453884
ENSMUST00000102996.4	chr14	+	2681	16	FSM	ENSMUSG00000021747.13	ENSMUST00000102996.4	2681	16	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_15	21.4813614300605	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTGCTTCCTTTTGTTC	NA	False	NA	14	True	AATAAA	-14	NA	13803532	14038581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303_13825377_13891310_13891426_13911582_13911740_13933117_13933256_13951006_13951144_13951780_13951935_13953205_13953323_13954397_13954521_13958579_13958912_13987152_13987357_13996360_13996423_14026822_14026918_14038054
ENSMUST00000102997.8	chr4	+	3365	12	FSM	ENSMUSG00000028252.21	ENSMUST00000102997.8	3365	12	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_11	80.4513096421711	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTTTCTTTTTAATTT	20	False	NA	NA	False	NA	NA	NA	21727725	21750546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21748136
ENSMUST00000103002.8	chr12	-	2110	5	FSM	ENSMUSG00000076432.14	ENSMUST00000103002.8	2110	5	0	0	0	0	multi-exon	FALSE	canonical	3	3292	junction_3	152.582764426393	5744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTATGGCTTTGTAACA	NA	False	NA	NA	False	AATAAA	-20	NA	21467437	21440329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798
ENSMUST00000103008.12	chr4	+	2086	9	FSM	ENSMUSG00000028249.16	ENSMUST00000103008.12	2086	9	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	110.946425697271	1447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCGTCTGTCTGTGCCTG	-5	True	NA	13	True	ATTAAA	-18	NA	6365676	6395655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_6365760_6377076_6377143_6378965_6379048_6380989_6381100_6385028_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
ENSMUST00000103009.5	chr4	-	582	3	FSM	ENSMUSG00000028234.7	ENSMUST00000103009.5	582	3	0	0	0	0	multi-exon	FALSE	canonical	3	6653	junction_2	831.5	42013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTTGCTGGCTTTTGTT	110	False	NA	-40	True	AATAAA	-15	NA	3835488	3834472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_3834684_3834935_3835010_3835191
ENSMUST00000103016.8	chr11	+	1689	15	FSM	ENSMUSG00000025142.19	ENSMUST00000103016.8	1689	15	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	257.64954048918	764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGAGTTTCTTTTCTG	NA	False	NA	13	True	AATAAA	-17	NA	120563889	120600270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120563997_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUST00000103026.10	chr11	+	2589	17	FSM	ENSMUSG00000020823.17	ENSMUST00000103026.10	2589	17	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_16	87.2585955651362	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTCTTCAAATCTTTTGA	NA	False	NA	3	True	ATTAAA	-17	NA	117006063	117048385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626_117047729_117048084
ENSMUST00000103032.11	chr11	+	3551	26	FSM	ENSMUSG00000020782.19	ENSMUST00000103032.11	3551	26	0	0	0	0	multi-exon	TRUE	canonical	3	630	junction_7	88.2626444199357	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTGAGGACCCGTGCTT	6800	False	NA	40	True	AATAAA	-25	NA	115714874	115746606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745888_115745932_115746017_115746080_115746291
ENSMUST00000103036.5	chr11	+	749	6	FSM	ENSMUSG00000018858.16	ENSMUST00000103036.5	749	6	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	353.082766501	1265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTTCCAGTGAGAGCT	NA	False	NA	16	True	AATAAA	-16	NA	115294582	115301745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_115294700_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
ENSMUST00000103038.8	chr11	-	1143	7	FSM	ENSMUSG00000015542.18	ENSMUST00000103038.8	1143	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	51.0217818409179	1474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTTGTTTGTTCACC	NA	False	NA	-5	True	AGTAAA	-16	NA	115078158	115073657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574_115077661_115077944
ENSMUST00000103039.2	chr11	-	1158	7	FSM	ENSMUSG00000015542.18	ENSMUST00000103039.2	1158	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	52.6331644498029	1196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTTGTTTGTTCACC	NA	False	NA	-5	True	AGTAAA	-16	NA	115078181	115073657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574_115077664_115077955
ENSMUST00000103040.11	chr11	-	1204	7	FSM	ENSMUSG00000015542.18	ENSMUST00000103040.11	1204	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	40.7553677446297	1557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTTGTTTGTTCACC	NA	False	NA	-5	True	AGTAAA	-16	NA	115078216	115073657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574_115077664_115077944
ENSMUST00000103042.10	chr2	+	1183	10	FSM	ENSMUSG00000059540.16	ENSMUST00000103042.10	1183	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	6.17841723309237	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTGGGTCCTGTCCTTCC	2292	False	NA	22	True	ATTAAA	-36	NA	181322102	181329864	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_181322269_181325005_181325069_181325340_181325447_181326235_181326327_181327584_181327716_181327982_181328040_181328390_181328546_181328620_181328768_181329406_181329479_181329669
ENSMUST00000103053.10	chr2	-	950	7	FSM	ENSMUSG00000027574.16	ENSMUST00000103053.10	950	7	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_2	10.8576649832682	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATTCGCATCCCTGGT	NA	False	NA	NA	False	NA	NA	NA	180596492	180576564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_180576823_180577735_180577821_180578943_180579005_180584822_180585021_180585533_180585615_180585869_180586008_180596363
ENSMUST00000103060.10	chr11	-	2050	13	FSM	ENSMUSG00000041895.16	ENSMUST00000103060.10	2050	13	0	0	0	0	multi-exon	FALSE	canonical	1	33	junction_5	23.2491039253846	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGAGTTGTTTACATTT	NA	False	NA	-6	True	AATAAA	-15	NA	109502258	109464156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_109464794_109467882_109467984_109468400_109468520_109469116_109469225_109470452_109470618_109473197_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
ENSMUST00000103061.3	chr11	+	1832	8	FSM	ENSMUSG00000020610.18	ENSMUST00000103061.3	1832	8	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	12.4638252063927	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTGGCCCTAGGAAT	NA	False	NA	19	True	AATAAA	-15	NA	109317051	109327815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
ENSMUST00000103068.10	chr11	+	2597	19	FSM	ENSMUSG00000018372.14	ENSMUST00000103068.10	2597	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	19.4787792098523	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCTTTTGAATTTATAAC	5096	False	NA	17	True	AATAAA	-19	NA	106680077	106709686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_106680204_106681556_106681686_106683302_106683411_106686948_106687060_106690869_106690970_106692288_106692405_106697061_106697256_106700017_106700128_106700453_106700584_106702021_106702176_106703221_106703362_106704586_106704689_106705429_106705563_106706293_106706464_106706559_106706635_106707478_106707632_106708659_106708807_106709021_106709094_106709359
ENSMUST00000103069.10	chr11	-	3233	14	FSM	ENSMUSG00000020717.20	ENSMUST00000103069.10	3233	14	0	0	0	0	multi-exon	FALSE	canonical	3	518	junction_1	285.979785771342	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	9553	False	NA	-9	True	AATAAA	-19	NA	106606091	106545042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844
ENSMUST00000103075.11	chr11	-	3766	21	FSM	ENSMUSG00000034187.19	ENSMUST00000103075.11	3766	21	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_14	21.9246436687122	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTATAGACCAGTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	103844882	103712607	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
ENSMUST00000103094.11	chr2	-	1152	6	FSM	ENSMUSG00000017307.17	ENSMUST00000103094.11	1152	6	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_4	26.9250812440743	3558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCTGACCTTTAATAGAA	8166	False	NA	-1	True	AATAAA	-19	NA	164646802	164634687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
ENSMUST00000103095.5	chr2	-	700	6	FSM	ENSMUSG00000017300.10	ENSMUST00000103095.5	700	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.16619037896906	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGCTTGACCGACTGATT	NA	False	NA	NA	False	AATAAA	-16	NA	164621661	164619080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_164619254_164619391_164619529_164619650_164619766_164619863_164620008_164620095_164620148_164621582
ENSMUST00000103101.11	chr2	+	2562	12	FSM	ENSMUSG00000017721.16	ENSMUST00000103101.11	2562	12	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_9	44.392501786631	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTTGCTTCCTTCCTAA	5112	False	NA	7	True	AATAAA	-16	NA	164339439	164350221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194
ENSMUST00000103107.5	chr11	+	2335	7	FSM	ENSMUSG00000078653.5	ENSMUST00000103107.5	2335	7	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_6	3.09120616516523	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGGTATTGTAAACATG	NA	False	NA	9	True	AATAAA	-14	NA	101169921	101179527	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101170307_101174217_101174294_101174546_101174719_101175585_101175749_101176490_101176636_101177679_101177777_101178230
ENSMUST00000103120.5	chr11	+	2357	4	FSM	ENSMUSG00000006782.17	ENSMUST00000103120.5	2357	4	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	8.2192186706253	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGCTATCACTCTTG	NA	False	NA	19	True	AATAAA	-15	NA	100465729	100472554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_100465895_100467061_100467732_100469738_100469879_100471172
ENSMUST00000103147.5	chr11	+	766	6	FSM	ENSMUSG00000069744.8	ENSMUST00000103147.5	766	6	0	0	0	0	multi-exon	FALSE	canonical	3	3867	junction_2	170.920566345891	16149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGCCTGCCTTT	NA	False	NA	22	True	AATAAA	-15	NA	97594224	97604326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_97594317_97594613_97594799_97597623_97597732_97601927_97602106_97603262_97603358_97604218
ENSMUST00000103152.11	chr11	-	2250	14	FSM	ENSMUSG00000018669.15	ENSMUST00000103152.11	2250	14	0	0	0	0	multi-exon	FALSE	canonical	3	831	junction_13	105.723262738262	1617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTCACCTTTACTGGCT	NA	False	NA	-13	True	GATAAA	-16	NA	96807322	96798251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
ENSMUST00000103156.2	chr11	+	607	6	FSM	ENSMUSG00000014351.13	ENSMUST00000103156.2	607	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.71293199325011	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGTGTCCATGGTGAAA	NA	False	NA	NA	False	AATAAA	-19	NA	95915871	95921657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95915907_95916179_95916288_95917449_95917597_95919511_95919602_95920313_95920416_95921532
ENSMUST00000103159.10	chr11	-	3248	13	FSM	ENSMUSG00000038909.17	ENSMUST00000103159.10	3248	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	285.686052920568	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201027	95165084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95196874_95197023_95200860
ENSMUST00000103172.4	chr2	+	1911	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	0	0	0	0	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	7573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCTTTGTGTGGTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	143757239	143785244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
ENSMUST00000103175.8	chr4	+	1309	7	FSM	ENSMUSG00000023286.17	ENSMUST00000103175.8	1309	7	0	0	0	0	multi-exon	FALSE	canonical	3	344	junction_1	275.8918870379	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTCTGTGTGTGTTCT	757	False	NA	34	True	TATAAA	-16	NA	156028287	156042168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_156028471_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
ENSMUST00000103188.10	chr2	-	1241	6	FSM	ENSMUSG00000027327.17	ENSMUST00000103188.10	1241	6	0	0	0	0	multi-exon	FALSE	canonical	3	656	junction_1	33.1336686770421	4160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTCAGAGGTTAGCGGG	NA	False	NA	-15	True	AATAAA	-14	NA	131001940	130988244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130993537_130993681_130995513_130995631_131001872
ENSMUST00000103191.11	chr4	+	474	4	FSM	ENSMUSG00000028936.16	ENSMUST00000103191.11	474	4	0	0	0	0	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	237099	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGTGGTTTATCCTTGCAT	NA	False	NA	16	True	AATAAA	-15	NA	152410309	152416937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
ENSMUST00000103195.5	chr11	-	998	5	FSM	ENSMUSG00000020526.13	ENSMUST00000103195.5	998	5	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_2	22.0609949911603	2332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTTCCCTTAGTAAAC	NA	False	NA	69	True	AATAAA	-16	NA	84807192	84801775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_84802475_84804047_84804129_84805036_84805112_84806924_84806957_84807081
ENSMUST00000103198.11	chr2	+	1877	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	0	0	0	0	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	4836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTATTTTGTTTATTG	NA	False	NA	31	True	AATAAA	-20	NA	130116349	130121233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
ENSMUST00000103199.9	chr2	-	1161	7	FSM	ENSMUSG00000027404.17	ENSMUST00000103199.9	1161	7	0	0	0	0	multi-exon	TRUE	canonical	3	3295	junction_4	264.518850409989	16429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTCATTTGTCTTCTGA	NA	False	NA	-11	True	AATAAA	-28	NA	130021323	130013554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018934_130019087_130021153
ENSMUST00000103205.11	chr2	+	3998	15	FSM	ENSMUSG00000027395.16	ENSMUST00000103205.11	3998	15	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_10	36.5564282853179	190	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGATTTTTATTTT	NA	False	NA	15	True	AATAAA	-16	NA	128942914	128968514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128951375_128951959_128952132_128954561_128954734_128955420_128955703_128957558_128957693_128959847_128960019_128960959_128961117_128964989_128965187_128965630_128965885_128967133
ENSMUST00000103213.10	chr11	+	1783	13	NIC	ENSMUSG00000018844.7	novel	2166	4	NA	NA	8644	7610	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	567	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCGCCGGGCAACCTCCG	6219	False	NA	NA	False	NA	NA	NA	82791593	82799237	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr11_+_82791877_82792382_82792454_82792534_82792695_82793820_82794024_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
ENSMUST00000103217.11	chr4	-	2006	9	FSM	ENSMUSG00000028975.17	ENSMUST00000103217.11	2006	9	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_6	18.1757909043871	321	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGCTCTGACCTCGTC	NA	False	NA	-12	True	AATAAA	-20	NA	149184333	149044991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_149046252_149047898_149047991_149050678_149050777_149051980_149052084_149055006_149055093_149068493_149068623_149126177_149126263_149160476_149160525_149184228
ENSMUST00000103226.10	chr2	-	1338	8	FSM	ENSMUSG00000027361.16	ENSMUST00000103226.10	1338	8	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_7	27.2074419591255	901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATTGAATGAGTGCAGA	NA	False	NA	-17	True	NA	NA	NA	126517406	126480940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_126481265_126488482_126488669_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
ENSMUST00000103227.8	chr2	-	2751	10	FSM	ENSMUSG00000027361.16	ENSMUST00000103227.8	2751	10	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_9	168.845754725693	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCTCCATGCAGACTCAT	NA	False	NA	-12	True	ATTAAA	-12	NA	126517464	126470834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_126472303_126481148_126481265_126488482_126488666_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126504910_126505009_126517275
ENSMUST00000103231.5	chr4	+	781	3	FSM	ENSMUSG00000029019.9	ENSMUST00000103231.5	781	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	1	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTCCGTGAGTTTCAA	NA	False	NA	NA	False	AATAAA	-30	NA	148070244	148071662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_148070559_148070752_148070976_148071418
ENSMUST00000103242.5	chr11	-	1375	3	FSM	ENSMUSG00000037278.10	ENSMUST00000103242.5	1375	3	0	0	0	0	multi-exon	TRUE	canonical	3	1037	junction_2	9	5220	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTGTTGTGTGGAT	NA	False	NA	-7	True	AATAAA	-23	NA	78441603	78432642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_78433623_78434311_78434457_78441353
ENSMUST00000104916.4	chr19	+	571	1	FSM	ENSMUSG00000044424.5	ENSMUST00000104916.4	571	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	653	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAATGACTGAATAAAG	NA	False	NA	NA	False	NA	NA	NA	23597112	23597683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_23597100_23597700
ENSMUST00000104958.2	chr11	-	837	1	FSM	ENSMUSG00000078153.4	ENSMUST00000104958.2	837	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1628	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAGAAATAC	1535	False	NA	NA	False	AATAAA	-22	NA	48837017	48836180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_48836200_48837000
ENSMUST00000104998.5	chr2	+	854	1	FSM	ENSMUSG00000078201.6	ENSMUST00000104998.5	854	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	519	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGCTCTGAATTGCCAG	NA	False	NA	6	True	ATTAAA	-16	NA	25145450	25146304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_25145400_25146300
ENSMUST00000105229.9	chr10	+	1043	8	FSM	ENSMUSG00000025351.15	ENSMUST00000105229.9	1043	8	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	1345.38160886396	40024	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGGTCTCAGTTTATC	NA	False	NA	35	True	ATTAAA	-27	NA	128744688	128748691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128744922_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
ENSMUST00000105230.4	chr10	+	918	11	FSM	ENSMUSG00000078427.4	ENSMUST00000105230.4	918	11	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_8	1099.33345259753	15421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAGAAAATGTGTTTT	NA	False	NA	NA	False	AATAAA	-6	NA	128657762	128713486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
ENSMUST00000105242.8	chr10	+	4385	29	FSM	ENSMUSG00000039994.16	ENSMUST00000105242.8	4385	29	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_23	64.9742001387741	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTTTGTTGTCTTCCTCC	6660	False	NA	20	True	AATAAA	-20	NA	128068002	128088810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086156_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
ENSMUST00000105243.9	chr10	+	1746	14	FSM	ENSMUSG00000039994.16	ENSMUST00000105243.9	1746	14	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	91.5603076711104	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAAGGTTCAGGACCA	6617	False	NA	NA	False	AAAAAG	-10	NA	128067959	128081978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128068045_128075710_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954
ENSMUST00000105244.8	chr10	+	4341	29	FSM	ENSMUSG00000039994.16	ENSMUST00000105244.8	4341	29	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_28	54.1443059549842	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGGAAAGAGTCATATAGC	6615	False	NA	-69	True	NA	NA	NA	128067957	128088721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088063
ENSMUST00000105267.8	chr10	-	2800	16	FSM	ENSMUSG00000020166.16	ENSMUST00000105267.8	2800	16	0	0	0	0	multi-exon	FALSE	canonical	3	333	junction_15	67.9643697503005	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCAGTGTTGGCTTTGAT	NA	False	NA	-6	True	AATAAA	-18	NA	116417405	116321070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385081_116417357
ENSMUST00000105324.9	chr10	-	1540	10	FSM	ENSMUSG00000020232.18	ENSMUST00000105324.9	1540	10	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_9	161.527966465926	958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	False	NA	-11	True	AATAAA	-17	NA	81186260	81181884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967_81186024_81186106
ENSMUST00000105352.2	chr10	-	989	8	FSM	ENSMUSG00000043822.19	ENSMUST00000105352.2	989	8	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_5	4.16986271980755	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGCCTCCCCTCAGTA	NA	False	NA	NA	False	AATAGA	-16	NA	80184246	80178572	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80178855_80179432_80179561_80180666_80180776_80180876_80180938_80181155_80181248_80181346_80181538_80183390_80183460_80184189
ENSMUST00000105355.8	chr10	+	2127	5	FSM	ENSMUSG00000035504.17	ENSMUST00000105357.2	2127	5	0	0	0	0	multi-exon	FALSE	canonical	3	489	junction_4	47.9921868641136	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGTGTGTCCGCTAAGCTG	7027	False	NA	18	True	AATAAA	-19	NA	80165786	80172275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799_80169969_80170943
ENSMUST00000105361.10	chr10	+	1537	12	FSM	ENSMUSG00000069565.13	ENSMUST00000105361.10	1537	12	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_11	285.507146282737	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAACAACAGGGTTTAAAAA	NA	False	NA	13	True	AATAAA	-15	NA	80100849	80123727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113408_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120384_80121083_80121261_80123369
ENSMUST00000105362.8	chr10	+	2081	12	FSM	ENSMUSG00000069565.13	ENSMUST00000105362.8	2081	12	0	0	0	0	multi-exon	FALSE	canonical	3	848	junction_9	77.3423216017195	960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGTGCTGTCTGCTTGT	NA	False	NA	12	True	AATAAA	-21	NA	80100817	80124242	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113408_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120384_80121083_80121261_80123372
ENSMUST00000105363.8	chr10	-	988	6	FSM	ENSMUSG00000020150.14	ENSMUST00000105363.8	988	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	3.91918358845308	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTTGGTTGGCAGTGAG	9249	False	NA	NA	False	AATAAA	-18	NA	80096846	80093984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80094292_80094773_80094885_80095010_80095079_80095434_80095499_80095601_80095748_80096554
ENSMUST00000105364.8	chr10	+	983	9	FSM	ENSMUSG00000020153.15	ENSMUST00000105364.8	983	9	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	752.129476885463	18751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTGTTCTGTGTGGAC	9361	False	NA	24	True	AATAAA	-15	NA	80084954	80092627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80085039_80085145_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
ENSMUST00000105365.9	chr10	+	1321	7	FSM	ENSMUSG00000045193.14	ENSMUST00000105365.9	1321	7	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_6	33.736314097555	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGCTCTGACCATTTCCC	6129	False	NA	NA	False	ATTAAA	-18	NA	80003611	80007489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80006815
ENSMUST00000105366.2	chr10	+	781	3	FSM	ENSMUSG00000003072.16	ENSMUST00000105366.2	781	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	1205	3440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAGTGTTCTGTTTCTAA	4500	False	NA	14	True	ATTAAA	-13	NA	79978203	79981646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_79978441_79979665_79979820_79981256
ENSMUST00000105367.8	chr10	+	1410	5	FSM	ENSMUSG00000003072.16	ENSMUST00000105367.8	1410	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	1062.04060656832	33993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTTCTGTTTCTAAC	3587	False	NA	15	True	ATTAAA	-14	NA	79977290	79981647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_79977501_79977874_79978441_79979665_79979820_79981052_79981142_79981256
ENSMUST00000105372.9	chr10	+	959	7	FSM	ENSMUSG00000075706.12	ENSMUST00000105372.9	959	7	0	0	0	0	multi-exon	FALSE	canonical	3	7423	junction_5	743.006878987148	31997	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	655	False	NA	4	True	AATAAA	-14	NA	79889321	79892273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
ENSMUST00000105381.5	chr10	+	1240	6	FSM	ENSMUSG00000023175.16	ENSMUST00000105381.5	1240	6	0	0	0	0	multi-exon	FALSE	canonical	3	6175	junction_4	464.180568313668	38202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTCACTACTTGAA	NA	False	NA	21	True	AATAAA	-15	NA	79545431	79547803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547089_79547115_79547327
ENSMUST00000105384.5	chr10	+	2329	16	FSM	ENSMUSG00000032763.12	ENSMUST00000105384.5	2329	16	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	41.9345521815444	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5399	False	NA	30	True	AATAAA	-39	NA	78410333	78420336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_78410500_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
ENSMUST00000105397.10	chr10	+	1818	7	FSM	ENSMUSG00000020284.17	ENSMUST00000105397.10	1818	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	1.5723301886761	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCTGTGTCCCAGGCCC	NA	False	NA	12	True	AATAAA	-12	NA	77814357	77821268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_77814616_77815586_77815606_77816334_77816382_77817417_77817648_77818703_77818876_77819349_77819426_77820252
ENSMUST00000105410.10	chr10	+	2347	6	FSM	ENSMUSG00000001436.16	ENSMUST00000105410.10	2347	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	40.1875602643405	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTCTGTTGTGAGACAC	NA	False	NA	16	True	ATTAAA	-18	NA	76869045	76886265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_76869182_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
ENSMUST00000105447.11	chr10	-	2597	9	FSM	ENSMUSG00000020078.17	ENSMUST00000105447.11	2597	9	0	0	0	0	multi-exon	FALSE	canonical	3	953	junction_7	50.5010829091813	1693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTTAAGTTTGTAGTT	5198	False	NA	-11	True	AATAAA	-12	NA	62322584	62291055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
ENSMUST00000105455.9	chr10	+	1512	10	FSM	ENSMUSG00000020085.16	ENSMUST00000105455.9	1512	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_9	38.6497408676411	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGCTGGAGCTTTTATTTT	NA	False	NA	8	True	AATAAA	-19	NA	61551041	61574432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574177
ENSMUST00000105466.3	chr10	+	2918	15	FSM	ENSMUSG00000019916.15	ENSMUST00000105466.3	2918	15	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_7	20.6288880070682	570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGGGGCTCCGGCTCATT	NA	False	NA	NA	False	NA	NA	NA	59159189	59208073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59184002_59184243_59186225_59186423_59187904_59188082_59191171_59191243_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
ENSMUST00000105499.2	chr10	+	1057	3	FSM	ENSMUSG00000019804.13	ENSMUST00000105499.2	1057	3	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_1	903	1085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTTGCACGGCCTCCAG	NA	False	NA	23	True	AATAAA	-24	NA	42378285	42411377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_42378489_42409144_42409270_42410648
ENSMUST00000105505.10	chr10	-	2071	9	FSM	ENSMUSG00000019813.17	ENSMUST00000105505.10	2071	9	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	56.5215666803389	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTGGAAATATTCTGGGA	NA	False	NA	5	True	AATAAA	-26	NA	41621927	41594835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766
ENSMUST00000105512.8	chr10	-	2727	12	FSM	ENSMUSG00000039480.15	ENSMUST00000105512.8	2727	12	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_7	20.4676725553911	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTTGTATTATTGAATA	NA	False	NA	-1	True	AATAAA	-17	NA	34294535	34179604	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34274109_34274192_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
ENSMUST00000105539.2	chr10	-	1961	12	FSM	ENSMUSG00000019809.17	ENSMUST00000105539.2	1961	12	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_11	40.2069029063706	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATATAGCTTTGTTT	NA	False	NA	NA	False	AATAAA	-8	NA	13428864	13399885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428692
ENSMUST00000105578.2	chr4	+	1654	7	FSM	ENSMUSG00000029076.15	ENSMUST00000105578.2	1654	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	268.571995313485	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGCTTGGGATGGTTG	NA	False	NA	136	True	NA	NA	NA	156077833	156094775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_156078027_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
ENSMUST00000105583.9	chr4	+	1434	8	FSM	ENSMUSG00000023286.17	ENSMUST00000105583.9	1434	8	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_1	334.708584793838	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTCTGTGTGTGTTCT	795	False	NA	34	True	TATAAA	-16	NA	156028325	156042168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_156028471_156030711_156030875_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
ENSMUST00000105591.2	chr4	+	773	4	FSM	ENSMUSG00000065990.13	ENSMUST00000105591.2	773	4	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_1	1010.64072086309	14009	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCACTATAATAAATATTGG	NA	False	NA	-3	True	NA	NA	NA	155916125	155917488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155916224_155916439_155916528_155916808_155917255_155917347
ENSMUST00000105592.8	chr4	+	1029	3	FSM	ENSMUSG00000065990.13	ENSMUST00000105592.8	1029	3	0	0	0	0	multi-exon	FALSE	canonical	3	2371	junction_1	52	4817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTAGGCCGACCTAGA	NA	False	NA	27	True	AATAAA	-17	NA	155916115	155917518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155916528_155916808_155917255_155917347
ENSMUST00000105595.2	chr4	+	874	4	FSM	ENSMUSG00000029038.10	ENSMUST00000105595.2	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	1675	junction_1	40.2685430026411	1101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGACCAAATGCTTTGGCT	NA	False	NA	NA	False	AGTAAA	-26	NA	155789591	155816646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383
ENSMUST00000105598.2	chr4	+	2673	20	FSM	ENSMUSG00000029062.15	ENSMUST00000105598.2	2673	20	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	84.1228490935262	2641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	4003	False	NA	23	True	ATTAAA	-28	NA	155709366	155734395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155709399_155709987_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
ENSMUST00000105612.2	chr4	+	2737	10	FSM	ENSMUSG00000029063.17	ENSMUST00000105612.2	2737	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	228.386125283963	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAGTAACAGCTTTCTTC	NA	False	NA	38	True	AATAAA	-24	NA	155666951	155675458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155667106_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
ENSMUST00000105613.10	chr4	+	3152	12	FSM	ENSMUSG00000029063.17	ENSMUST00000105613.10	3152	12	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_7	32.1412173266612	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAGTAACAGCTTTCTTC	9572	False	NA	38	True	AATAAA	-24	NA	155648156	155675458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
ENSMUST00000105645.9	chr4	+	977	3	FSM	ENSMUSG00000047613.11	ENSMUST00000105645.9	977	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	388	1106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAATACTGTGTTCACA	NA	False	NA	NA	False	AATAAA	-22	NA	154041693	154046375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_154041780_154044987_154045450_154045946
ENSMUST00000105673.8	chr4	-	919	7	FSM	ENSMUSG00000028964.15	ENSMUST00000105673.8	919	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	2143.40985477709	628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGTAGTATGTGAAGCA	NA	False	NA	-107	True	NA	NA	NA	150994108	150981695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150993847
ENSMUST00000105674.8	chr4	-	937	8	FSM	ENSMUSG00000028964.15	ENSMUST00000105674.8	937	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	2596.17855742644	17798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCCAGCTACCTTTGTG	NA	False	NA	-13	True	AATAAA	-14	NA	150994083	150981601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150993847_150993897_150993947
ENSMUST00000105675.8	chr4	-	882	7	FSM	ENSMUSG00000028964.15	ENSMUST00000105675.8	882	7	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_6	2038.03331806807	41492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	5729	False	NA	-1	True	AATAAA	-26	NA	150998894	150981589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150998776
ENSMUST00000105683.9	chr4	-	1460	7	FSM	ENSMUSG00000028972.12	ENSMUST00000105683.9	1460	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	3.44802681092953	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTTACTATTCTTTT	NA	False	NA	2	True	AATAAA	-28	NA	150282927	150271471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_150271966_150273577_150273702_150276931_150277090_150278164_150278235_150280512_150280606_150281774_150281924_150282555
ENSMUST00000105699.8	chr4	-	1904	7	FSM	ENSMUSG00000041459.16	ENSMUST00000105699.8	1904	7	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	346.808024064547	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711215	148701182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUST00000105701.9	chr4	+	738	5	FSM	ENSMUSG00000028979.18	ENSMUST00000105701.9	738	5	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	7.49583217528247	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGGCTGTGTGTCTCT	NA	False	NA	5	True	AATAAA	-15	NA	148687010	148688874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_148687048_148687124_148687354_148687448_148687627_148688143_148688276_148688712
ENSMUST00000105707.2	chr4	+	949	8	FSM	ENSMUSG00000029003.12	ENSMUST00000105707.2	949	8	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_6	213.795439137317	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGGATGAACATGTGTA	NA	False	NA	27	True	AATAAA	-35	NA	148225199	148230153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229582_148229654_148229828
ENSMUST00000105720.8	chr4	-	2594	5	FSM	ENSMUSG00000066000.13	ENSMUST00000105720.8	2594	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	194.219592214586	1152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147726970	147696393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726791
ENSMUST00000105721.9	chr4	+	1488	4	FSM	ENSMUSG00000078496.10	ENSMUST00000105721.9	1488	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	138.089343059726	1256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAAAACCTTACAAATGT	NA	False	NA	NA	False	NA	NA	NA	147576873	147597943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_147577038_147592042_147592098_147595209_147595337_147596801
ENSMUST00000105734.10	chr4	-	2729	6	FSM	ENSMUSG00000078495.11	ENSMUST00000105734.10	2729	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	98.3963413953995	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9523	False	NA	NA	False	NA	NA	NA	147894245	147838430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_147840693_147842158_147842286_147845677_147845736_147880114_147880182_147891546_147891641_147894124
ENSMUST00000105735.9	chr4	+	3038	5	FSM	ENSMUSG00000056300.15	ENSMUST00000105735.9	3038	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	129.101462036648	748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	146586483	146623849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_146586602_146597241_146597335_146616526_146616611_146619877_146620005_146621233
ENSMUST00000105738.9	chr4	+	4006	5	FSM	ENSMUSG00000058186.14	ENSMUST00000105738.9	4006	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	173.168992605489	2193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	AATAAA	-19	NA	145397254	145431011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_145397419_145399301_145399395_145422720_145422806_145425813_145425941_145427474
ENSMUST00000105739.8	chr4	+	3595	4	FSM	ENSMUSG00000078502.11	ENSMUST00000105739.8	3595	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	21.2289111041209	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145311735	145351915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_145311905_145343640_145343746_145347127_145347255_145348721
ENSMUST00000105741.2	chr4	+	3044	5	FSM	ENSMUSG00000078503.10	ENSMUST00000105741.2	3044	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	215.70972972956	1527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGATTGTTTCCAAT	5019	False	NA	NA	False	NA	NA	NA	145241453	145265758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_145241589_145247375_145247456_145257381_145257486_145261385_145261513_145263160
ENSMUST00000105742.8	chr4	+	2996	4	FSM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_2	195.188797492752	1789	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGATTGTTTCCAAT	894	False	NA	NA	False	NA	NA	NA	145237328	145265758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160
ENSMUST00000105784.8	chr4	-	3036	9	FSM	ENSMUSG00000006219.13	ENSMUST00000105784.8	3036	9	0	0	0	0	multi-exon	FALSE	canonical	3	1168	junction_5	205.258944689385	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	-4	True	AATAAA	-14	NA	141327235	141303372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
ENSMUST00000105804.2	chr4	+	786	4	FSM	ENSMUSG00000028751.14	ENSMUST00000105804.2	786	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.79869268479038	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCTTCCATTATTTCTTC	NA	False	NA	NA	False	NA	NA	NA	138606670	138610128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_138606808_138607661_138607801_138607980_138608088_138609725
ENSMUST00000105850.8	chr4	+	2683	11	FSM	ENSMUSG00000066037.15	ENSMUST00000105850.8	2683	11	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_1	130.381325349914	1008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATTTCAAATTCAATTGT	NA	False	NA	32	True	AATAAA	-26	NA	136038278	136067992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_136038401_136041400_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
ENSMUST00000105852.8	chr4	-	1588	10	FSM	ENSMUSG00000028670.15	ENSMUST00000105852.8	1588	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	142.996848795462	817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCCTTATGTGGTACA	NA	False	NA	-11	True	ATTAAA	-20	NA	135699240	135695534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135696379_135696454_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699169
ENSMUST00000105855.2	chr4	-	2789	16	FSM	ENSMUSG00000037188.8	ENSMUST00000105855.2	2789	16	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_6	62.4956531821747	1046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGTTTTCATGCGCTTC	NA	False	NA	-2	True	AATAAA	-20	NA	135300941	135269198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135270085_135273553_135273619_135275723_135275810_135276549_135276639_135277606_135277642_135279056_135279194_135279310_135279390_135279846_135280006_135281823_135281919_135283113_135283226_135283397_135283552_135284154_135284229_135284478_135284825_135286413_135286476_135288479_135288667_135300718
ENSMUST00000105859.8	chr4	-	1801	5	FSM	ENSMUSG00000043924.17	ENSMUST00000105859.8	1801	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	5.49431524395898	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTTTGTCACCTTGCA	5729	False	NA	0	True	ATTAAA	-17	NA	135125501	135096886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135098022_135099187_135099273_135104301_135104388_135107962_135108150_135125193
ENSMUST00000105861.8	chr4	-	3797	17	FSM	ENSMUSG00000028809.17	ENSMUST00000105861.8	3797	17	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_5	249.404846271579	1096	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCACTCACATTTATTCG	NA	False	NA	0	True	AATAAA	-19	NA	135080632	135047794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
ENSMUST00000105863.2	chr4	-	719	7	FSM	ENSMUSG00000028822.12	ENSMUST00000105863.2	719	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	233.0748568355	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCACCCTGCTCACCC	NA	False	NA	NA	False	NA	NA	NA	134642326	134625701	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640573_134642199
ENSMUST00000105866.3	chr4	+	1275	3	FSM	ENSMUSG00000078521.3	ENSMUST00000105866.3	1275	3	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_2	7.5	2040	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTGGTGTCGTGCTTCC	NA	False	NA	20	True	AATAAA	-20	NA	134238309	134251238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_134238481_134248782_134248913_134250264
ENSMUST00000105867.8	chr4	+	802	5	FSM	ENSMUSG00000028832.12	ENSMUST00000105867.8	802	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	432.634011030108	822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGGCTAGTTCTGTATT	NA	False	NA	NA	False	NA	NA	NA	134195719	134200975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_134195741_134197413_134197487_134197977_134198151_134200114_134200307_134200632
ENSMUST00000105879.2	chr4	-	518	2	FSM	ENSMUSG00000028843.9	ENSMUST00000105879.2	518	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGACTGCTTGTGGTGT	9276	False	NA	-12	True	ATTAAA	-15	NA	133856050	133854723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_133855118_133855926
ENSMUST00000105906.2	chr4	-	4057	16	FSM	ENSMUSG00000037622.15	ENSMUST00000105906.2	4057	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	171.533398108551	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCATTTTGTTCTAGCTG	4317	False	NA	-22	True	NA	NA	NA	133066582	133019792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_133021697_133022508_133022644_133023726_133023905_133024730_133024967_133027871_133028046_133029029_133029139_133029693_133029767_133030861_133030978_133031461_133031557_133033134_133033318_133036059_133036248_133040617_133040730_133041070_133041118_133049482_133049567_133051138_133051286_133066306
ENSMUST00000105907.9	chr4	-	1484	6	FSM	ENSMUSG00000028857.17	ENSMUST00000105907.9	1484	6	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_4	52.562343935559	1549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTCTGTCATTTTCTT	NA	False	NA	-12	True	AATAAA	-14	NA	133005103	132993355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132998273_132998359_133004841
ENSMUST00000105909.4	chr7	-	2462	22	FSM	ENSMUSG00000010755.18	ENSMUST00000105909.4	2462	22	0	0	0	0	multi-exon	FALSE	canonical	3	1234	junction_21	93.4109735380392	1499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTCTGGTCTGCCCTCTC	NA	False	NA	-3	True	AATAAA	-15	NA	143153793	143111443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
ENSMUST00000105910.2	chr4	+	986	6	FSM	ENSMUSG00000028865.15	ENSMUST00000105910.2	986	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	9.2736184954957	292	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGACCTATGTCTTGGG	NA	False	NA	20	True	AATAAA	-22	NA	132948120	132951866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132948379_132948753_132948916_132949015_132949088_132949479_132949525_132950913_132951059_132951562
ENSMUST00000105919.2	chr4	-	1090	7	FSM	ENSMUSG00000028882.14	ENSMUST00000105919.2	1090	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	56.674509261219	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGGTGGAGGGATGACAA	NA	False	NA	NA	False	NA	NA	NA	132570434	132555137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132555515_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570367
ENSMUST00000105920.8	chr7	+	895	4	FSM	ENSMUSG00000045752.14	ENSMUST00000105920.8	895	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	69.3012746395524	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623104	142624824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_142623251_142623491_142623588_142623672_142624030_142624528
ENSMUST00000105940.10	chr4	+	772	8	FSM	ENSMUSG00000054405.15	ENSMUST00000105940.10	772	8	0	0	0	0	multi-exon	FALSE	canonical	2	30	junction_2	1077.48700451465	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCCACCCCACCAGAGAG	2358	False	NA	-50	True	NA	NA	NA	132262887	132280508	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132262975_132265497_132265600_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
ENSMUST00000105951.8	chr4	-	2326	11	FSM	ENSMUSG00000028896.14	ENSMUST00000105951.8	2326	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	167.562525643415	2500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	NA	False	NA	-14	True	AATAAA	-17	NA	132078947	132059233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132075310_132075432_132078921
ENSMUST00000105962.10	chr4	-	961	8	FSM	ENSMUSG00000028898.16	ENSMUST00000105962.10	961	8	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	178.321310549015	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2365	False	NA	0	True	AATAAA	-17	NA	132056800	132039073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132048989_132049122_132052518_132052572_132053256_132053357_132055779_132055878_132056663
ENSMUST00000105964.2	chr4	-	1925	10	FSM	ENSMUSG00000028901.14	ENSMUST00000105964.2	1925	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	18.219511993573	320	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAACAAA	1912	False	NA	-58	True	NA	NA	NA	131988913	131952981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979144_131988801
ENSMUST00000105992.9	chr4	+	5058	20	FSM	ENSMUSG00000028580.16	ENSMUST00000105992.9	5058	20	0	0	0	0	multi-exon	TRUE	canonical	3	63	junction_3	153.52394310997	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTACTGCTCTCACTT	NA	False	NA	22	True	AATACA	-16	NA	130390669	130508873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
ENSMUST00000105994.4	chr4	+	1584	10	FSM	ENSMUSG00000074088.7	ENSMUST00000105994.4	1584	10	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_7	51.5407066738946	4810	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAACCTTGTGACTTGG	NA	False	NA	22	True	ATTAAA	-23	NA	130253924	130283819	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_130254143_130256420_130256551_130258867_130258962_130261981_130262148_130271838_130271962_130277186_130277308_130278274_130278358_130279746_130279809_130282367_130282472_130283336
ENSMUST00000105999.9	chr4	-	1952	12	FSM	ENSMUSG00000028776.15	ENSMUST00000105999.9	1952	12	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_11	29.3189922368611	1127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGTCTGGGAGTCTTCA	NA	False	NA	NA	False	AATAAA	-19	NA	130068595	130059394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722_130061847_130062811_130062927_130063103_130063197_130066724_130066789_130067685_130068001_130068515
ENSMUST00000106000.10	chr7	+	1865	8	FSM	ENSMUSG00000025510.15	ENSMUST00000106000.10	1865	8	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	68.1968938187848	1712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCGAATCAGCTTGCTGA	NA	False	NA	8	True	NA	NA	NA	141047305	141051386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_141047498_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
ENSMUST00000106003.2	chr7	+	449	4	FSM	ENSMUSG00000025508.14	ENSMUST00000106003.2	449	4	0	0	0	0	multi-exon	FALSE	canonical	3	11523	junction_3	1651.02843370091	49348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCTTTAAACATTTTGT	2597	False	NA	27	True	AATAAA	-20	NA	141027762	141031263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_141027945_141028638_141028688_141030916_141031016_141031144
ENSMUST00000106004.8	chr7	+	421	5	FSM	ENSMUSG00000025508.14	ENSMUST00000106004.8	421	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	6154.22628666675	25171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCTTTAAACATTTTGT	2459	False	NA	27	True	AATAAA	-20	NA	141027624	141031263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_141027655_141027820_141027945_141028638_141028688_141030916_141031016_141031144
ENSMUST00000106040.8	chr7	+	560	3	FSM	ENSMUSG00000025491.15	ENSMUST00000106040.8	560	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	567.5	6769	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTAGTCCTGTGTTGAGT	NA	False	NA	24	True	AATAAA	-28	NA	140547940	140549738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140547965_140548152_140548352_140549401
ENSMUST00000106041.3	chr3	+	1971	11	FSM	ENSMUSG00000028175.16	ENSMUST00000106041.3	1971	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_7	17.3262806164508	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTGCTTCTTTATTTAT	NA	False	NA	NA	False	AAAACA	-43	NA	159201094	159235096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159229413_159229587_159232167_159232345_159233580_159233767_159234635
ENSMUST00000106043.3	chr4	+	558	3	FSM	ENSMUSG00000078554.3	ENSMUST00000106043.3	558	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0.5	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGGGCTGGCCGTGTATG	2238	False	NA	NA	False	AATAAA	-25	NA	129384982	129385749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129385129_129385207_129385355_129385484
ENSMUST00000106047.4	chr4	+	618	6	FSM	ENSMUSG00000057572.16	ENSMUST00000106047.4	618	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	246.415421595321	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGTAGCAGTGGTCT	NA	False	NA	17	True	TTTAAA	-24	NA	129229839	129240826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129229933_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
ENSMUST00000106048.10	chr7	-	1416	7	FSM	ENSMUSG00000025486.18	ENSMUST00000106048.10	1416	7	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	42.0135560133737	1020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	False	NA	-14	True	AATAAA	-14	NA	140461782	140443582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458059_140461675
ENSMUST00000106057.8	chr3	+	2737	11	FSM	ENSMUSG00000028180.19	ENSMUST00000106057.8	2737	11	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_9	297.644569915193	1307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCTCTGACTGAATGTT	NA	False	NA	3	True	AATAAA	-11	NA	157240024	157254013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157251711_157251787_157252311
ENSMUST00000106058.8	chr3	+	2924	10	FSM	ENSMUSG00000028180.19	ENSMUST00000106058.8	2924	10	0	0	0	0	multi-exon	TRUE	canonical	3	697	junction_8	81.8057017542553	1625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTTTTTGTCACTGT	NA	False	NA	37	True	AATAAA	-45	NA	157239796	157254047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157252311
ENSMUST00000106091.9	chr4	-	1623	2	FSM	ENSMUSG00000042367.13	ENSMUST00000106091.9	1623	2	0	0	0	0	multi-exon	FALSE	canonical	3	984	junction_1	0	4411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127222954	127219027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_127220565_127222868
ENSMUST00000106112.2	chr7	-	1756	6	FSM	ENSMUSG00000078566.9	ENSMUST00000106112.2	1756	6	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_2	24.8628236529965	708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCGCTGTACTGGCTAGT	NA	False	NA	NA	False	AGTAAA	-19	NA	138511235	138492564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_138493690_138496108_138496259_138496338_138496446_138499724_138499807_138500409_138500558_138511091
ENSMUST00000106115.8	chr11	-	2239	7	FSM	ENSMUSG00000039294.15	ENSMUST00000106115.8	2239	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_6	22.8284666346404	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTTTCTGTTTTCTGC	NA	False	NA	0	True	AATAAA	-22	NA	121120131	121113413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121120038
ENSMUST00000106117.8	chr11	+	2149	13	FSM	ENSMUSG00000039307.17	ENSMUST00000106117.8	2149	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	4.64503916979059	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCCACCAGCAGAAACTCT	NA	False	NA	4	True	AATAAA	-20	NA	121095260	121113473	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_121095669_121098464_121098602_121102867_121102978_121104808_121104897_121105585_121105751_121107718_121107903_121108913_121108986_121109368_121109565_121110666_121110750_121111908_121111988_121112061_121112164_121112326_121112417_121113038
ENSMUST00000106144.8	chr7	-	1045	7	FSM	ENSMUSG00000030979.14	ENSMUST00000106144.8	1045	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	27.2299875545734	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCACTGTTGCTTGTACTT	NA	False	NA	NA	False	AATAAA	-14	NA	133310788	133293862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_133294386_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310737
ENSMUST00000106145.10	chr7	-	1644	10	FSM	ENSMUSG00000030979.14	ENSMUST00000106145.10	1644	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	18.4477908610847	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATCTGAGTATGGTAGC	NA	False	NA	NA	False	NA	NA	NA	133310798	133288084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_133288846_133291310_133291410_133292236_133292323_133292814_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310652
ENSMUST00000106148.10	chr11	-	830	7	FSM	ENSMUSG00000039450.12	ENSMUST00000106148.10	830	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	29.9035486560077	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGATCTGTGCTATCTG	6916	False	NA	-4	True	AATAAA	-37	NA	120618069	120616224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120616434_120616563_120616723_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
ENSMUST00000106154.8	chr11	-	873	6	FSM	ENSMUSG00000025144.18	ENSMUST00000106154.8	873	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	397.451380674417	5329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604558	120601767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120603265_120603539_120604518
ENSMUST00000106155.4	chr11	-	700	6	FSM	ENSMUSG00000025144.18	ENSMUST00000106155.4	700	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	401.222631465375	6871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604558	120601767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120603265_120603366_120604518
ENSMUST00000106158.9	chr11	+	1690	15	FSM	ENSMUSG00000025142.19	ENSMUST00000106158.9	1690	15	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_10	252.602010107212	918	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGAGTTTCTTTTCTG	NA	False	NA	13	True	AATAAA	-17	NA	120563881	120600270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUST00000106159.10	chr11	+	1615	15	FSM	ENSMUSG00000025142.19	ENSMUST00000106159.10	1615	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	257.64954048918	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGAGTTTCTTTTCTG	NA	False	NA	13	True	AATAAA	-17	NA	120567486	120600270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120567520_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
ENSMUST00000106192.9	chr3	+	2425	16	FSM	ENSMUSG00000028256.17	ENSMUST00000106192.9	2425	16	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	23.1944437791084	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCAAGTGTCTCGCTATA	NA	False	NA	NA	False	AATAAA	-43	NA	144824349	144859676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_144824544_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
ENSMUST00000106194.8	chr11	+	530	2	FSM	ENSMUSG00000044034.12	ENSMUST00000106194.8	530	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCTAAGGGTTGCTGGA	1208	False	NA	NA	False	AATAAA	-14	NA	120499302	120499919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120499554_120499640
ENSMUST00000106195.3	chr11	+	542	2	FSM	ENSMUSG00000044034.12	ENSMUST00000106195.3	542	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCTAAGGGTTGCTGGA	1208	False	NA	NA	False	AATAAA	-14	NA	120499302	120499919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120499566_120499640
ENSMUST00000106197.10	chr11	-	1867	6	FSM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	0	0	0	0	multi-exon	TRUE	canonical	3	3168	junction_5	160.793780974265	6367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGGTCTGTGCAGCTT	NA	False	NA	-10	True	AATAAA	-22	NA	120472450	120468929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
ENSMUST00000106204.2	chr4	+	1120	7	FSM	ENSMUSG00000043333.13	ENSMUST00000106204.2	1120	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	3.97562014729219	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123703706	123723697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_123703970_123708035_123708185_123711656_123711770_123716549_123716651_123718653_123718715_123720630_123720693_123723326
ENSMUST00000106205.9	chr11	+	2900	22	FSM	ENSMUSG00000025793.18	ENSMUST00000106205.9	2900	22	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_14	47.8204313112466	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCATGATTGATTGTTCG	8182	False	NA	13	True	AATAAA	-14	NA	120358460	120374805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120358590_120359834_120359920_120360425_120360502_120360860_120360954_120362305_120362430_120363428_120363482_120365081_120365151_120365945_120366071_120367954_120368034_120368114_120368214_120368344_120368441_120369161_120369201_120369287_120369432_120369520_120369581_120369915_120370124_120370378_120370552_120370624_120370766_120370849_120371025_120373355_120373490_120373569_120373690_120373840_120373928_120374214
ENSMUST00000106206.8	chr4	-	599	3	FSM	ENSMUSG00000028648.14	ENSMUST00000106206.8	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	1021.5	24732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGCTTTTGGGTCA	1848	False	NA	-25	True	AATAAA	-17	NA	123611979	123606502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_123606720_123609656_123609875_123611815
ENSMUST00000106211.3	chr3	+	1178	4	FSM	ENSMUSG00000037072.17	ENSMUST00000106211.3	1178	4	0	0	0	0	multi-exon	FALSE	canonical	1	13	junction_3	635.117486944126	9004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTTGATTTTAAATTAG	NA	False	NA	9	True	AATAAA	-11	NA	144276453	144303422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_144276561_144283346_144283515_144296372_144296437_144302583
ENSMUST00000106215.11	chr11	-	1827	5	FSM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	0	0	0	0	multi-exon	FALSE	canonical	3	5636	junction_4	437.152933765747	2847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATTGTTTTTCTGGTTTG	NA	False	NA	-22	True	AATAAA	-17	NA	120238917	120236516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794
ENSMUST00000106223.4	chr11	+	781	3	FSM	ENSMUSG00000078572.4	ENSMUST00000106223.4	781	3	0	0	0	0	multi-exon	FALSE	canonical	3	883	junction_2	30.5	7184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGGCTGGAGAGATTGT	NA	False	NA	NA	False	AATAAA	-18	NA	119989753	119991531	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_119989892_119989973_119990085_119990999
ENSMUST00000106225.4	chr11	-	2566	12	FSM	ENSMUSG00000025377.15	ENSMUST00000106225.4	2566	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	26.7800962231096	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCCACTTGGGCTGGT	NA	False	NA	-8	True	AATAAA	-16	NA	119989557	119981356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_119982839_119983676_119983812_119984070_119984150_119984242_119984357_119984516_119984692_119986169_119986242_119986359_119986436_119986629_119986698_119987406_119987501_119987703_119987796_119988334_119988408_119989451
ENSMUST00000106255.8	chr4	-	2737	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106255.8	2737	13	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_12	193.312139642945	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTGATGTTTTCAGTA	NA	False	NA	-7	True	AATAAA	-25	NA	122779837	122752839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779625
ENSMUST00000106257.10	chr4	-	2768	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106257.10	2768	13	0	0	0	0	multi-exon	FALSE	canonical	3	357	junction_12	172.387322297462	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTGATGTTTTCAGTA	NA	False	NA	-7	True	AATAAA	-25	NA	122779849	122752839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779606
ENSMUST00000106291.10	chr3	+	1512	8	FSM	ENSMUSG00000078578.10	ENSMUST00000106291.10	1512	8	0	0	0	0	multi-exon	FALSE	canonical	2	536	junction_1	766.131549422427	936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGTTAGCTGCCTGGAT	NA	False	NA	73	True	AATAAA	-13	NA	135143994	135171819	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135144114_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUST00000106292.8	chr7	+	2175	13	FSM	ENSMUSG00000030822.16	ENSMUST00000106292.8	2175	13	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	75.4609446446748	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTCCTTTGTGCC	NA	False	NA	9	True	TATAAA	-14	NA	127069542	127075931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_127069596_127070156_127070292_127071077_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
ENSMUST00000106300.2	chr7	-	1015	3	FSM	ENSMUSG00000045251.14	ENSMUST00000106300.2	1015	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	2.5	588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	4	True	NA	-4	True	ATTAAA	-17	NA	127021206	127018138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127018814_127020576_127020691_127020980
ENSMUST00000106313.8	chr7	-	1285	10	FSM	ENSMUSG00000000486.14	ENSMUST00000106313.8	1285	10	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_7	44.4297197830461	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAACCAGATCCCTCCAA	NA	False	NA	NA	False	NA	NA	NA	126817475	126813814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126814017_126814120_126814212_126814452_126814619_126814830_126814928_126815039_126815142_126815861_126815980_126816072_126816208_126816790_126816915_126817142_126817230_126817312
ENSMUST00000106314.8	chr7	-	1486	11	FSM	ENSMUSG00000000486.14	ENSMUST00000106314.8	1486	11	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_10	48.9043965303734	1692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTCCCGCCTTCCCCCA	NA	False	NA	-22	True	AATAAA	-3	NA	126817670	126813633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126814017_126814120_126814212_126814452_126814619_126814830_126814928_126815039_126815142_126815861_126815980_126816072_126816208_126816790_126816915_126817142_126817230_126817312_126817404_126817578
ENSMUST00000106317.2	chr4	-	613	9	FSM	ENSMUSG00000060288.14	ENSMUST00000106317.2	613	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	164.818413337224	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGAATCCTTGTGACCT	9629	False	NA	NA	False	AATAAA	-21	NA	119177696	119168510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_119168634_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
ENSMUST00000106318.8	chr4	-	800	10	FSM	ENSMUSG00000060288.14	ENSMUST00000106318.8	800	10	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_8	163.771144144263	5417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTCTGTAGTTACTATT	9582	False	NA	-3	True	AATAAA	-19	NA	119177743	119157206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_119157381_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
ENSMUST00000106319.8	chr4	-	622	8	FSM	ENSMUSG00000060288.14	ENSMUST00000106319.8	622	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	123.382928068576	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTCTGTAGTTACTATT	9631	False	NA	-3	True	AATAAA	-19	NA	119177694	119157206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_119157381_119167955_119168045_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
ENSMUST00000106321.9	chr4	-	1288	10	FSM	ENSMUSG00000060288.14	ENSMUST00000106321.9	1288	10	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_8	172.260640876149	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTACCTTGTCTAGCCTG	9644	False	NA	-2	True	NA	NA	NA	119177681	119164356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_119165081_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
ENSMUST00000106343.3	chr7	-	1973	7	FSM	ENSMUSG00000030689.16	ENSMUST00000106343.3	1973	7	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_1	102.030496530313	1362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTTTTGTGCTTGGA	9194	False	NA	-4	True	ATTAAA	-26	NA	126461010	126450756	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876
ENSMUST00000106345.3	chr4	+	684	4	FSM	ENSMUSG00000028643.12	ENSMUST00000106345.3	684	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	208.740668454105	1823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTTCTTGCTTTAGAG	NA	False	NA	11	True	AATAAA	-14	NA	119052603	119058495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_119052684_119053068_119053219_119055955_119056008_119058093
ENSMUST00000106348.8	chr7	-	1460	9	FSM	ENSMUSG00000030695.17	ENSMUST00000106348.8	1460	9	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_8	6626.46755325754	2689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTGTTCATGTCTTG	NA	False	NA	-4	True	AATAAA	-17	NA	126399619	126394406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126399459
ENSMUST00000106349.2	chr11	+	2932	10	FSM	ENSMUSG00000059248.14	ENSMUST00000106349.2	2932	10	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_1	107.436803129406	1426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTCTCTTTGGCAAGACC	NA	False	NA	102	True	AATAAA	-27	NA	117223170	117253150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_117223297_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
ENSMUST00000106355.5	chr4	-	1588	2	FSM	ENSMUSG00000045268.14	ENSMUST00000106355.5	1588	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTACTTATTTGGGGA	NA	False	NA	2	True	AGTAAA	-19	NA	119031392	119026709	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_119028240_119031334
ENSMUST00000106369.2	chr7	+	642	2	FSM	ENSMUSG00000047721.9	ENSMUST00000106369.2	642	2	0	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_1	0	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTCTCAGTGTGCTGTT	1148	False	NA	22	True	ATTAAA	-17	NA	126295144	126295869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126295272_126295354
ENSMUST00000106378.8	chr11	+	1988	5	FSM	ENSMUSG00000020812.19	ENSMUST00000106378.8	1988	5	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	18.9340962287615	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTAGCATTGTGGGTAT	NA	False	NA	3	True	AATAAA	-16	NA	116562494	116566624	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125
ENSMUST00000106384.10	chr4	+	1743	8	FSM	ENSMUSG00000006392.17	ENSMUST00000106384.10	1743	8	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	317.693473110706	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTGGCTCAGGGTTGTC	NA	False	NA	NA	False	AATAAA	-16	NA	118266533	118272979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_118266584_118268081_118268201_118268722_118268771_118268854_118269000_118269548_118269690_118269860_118269943_118270823_118270923_118271920
ENSMUST00000106391.8	chr11	-	1841	10	FSM	ENSMUSG00000015869.17	ENSMUST00000106391.8	1841	10	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_5	49.0028973696177	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGCTGCTGAGCTCCCAG	NA	False	NA	-7	True	AATAAA	-27	NA	116381174	116361670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116362382_116363002_116363150_116363769_116363841_116368027_116368174_116368885_116368942_116369350_116369467_116370477_116370651_116376694_116376762_116378943_116378997_116380873
ENSMUST00000106393.8	chr4	+	843	7	FSM	ENSMUSG00000006395.17	ENSMUST00000106393.8	843	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.6249253283145	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATATGTGTATATTACAG	NA	False	NA	NA	False	ATTAAA	-16	NA	118217195	118219941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_118217429_118218812_118218928_118219070_118219150_118219237_118219288_118219387_118219458_118219559_118219695_118219780
ENSMUST00000106407.9	chr7	+	2234	13	FSM	ENSMUSG00000030727.13	ENSMUST00000106407.9	2234	13	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	15.3541525327841	336	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTTGCCTTGTGCCTGC	NA	False	NA	12	True	AATAAA	-15	NA	126028237	126045073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126028329_126028747_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043480_126043589_126043602_126043694_126043751_126043991_126044109_126044468
ENSMUST00000106425.4	chr11	-	2330	15	FSM	ENSMUSG00000020780.16	ENSMUST00000106425.4	2330	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	170.438824383246	976	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCTGGTTTTTGCA	9899	False	NA	-2	True	ATTAAA	-17	NA	116164961	116135991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116162738_116162806_116164751
ENSMUST00000106439.2	chr11	-	1411	9	FSM	ENSMUSG00000020775.14	ENSMUST00000106439.2	1411	9	0	0	0	0	multi-exon	FALSE	canonical	3	763	junction_8	33.509093914936	3036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTCTTCACTTTCGGG	407	False	NA	-2	True	AATAAA	-20	NA	116029694	116022642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267_116029448_116029536
ENSMUST00000106448.9	chr4	+	1555	12	FSM	ENSMUSG00000028683.15	ENSMUST00000106448.9	1555	12	0	0	0	0	multi-exon	TRUE	canonical	3	567	junction_7	49.9305302519377	3273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGCTCAGTGGTAGAG	NA	False	NA	20	True	AATAAA	-20	NA	116876598	116944049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_116876674_116879351_116879510_116885607_116885754_116901632_116901793_116909920_116910033_116915960_116916051_116922537_116922666_116923570_116923762_116925940_116926019_116927835_116927985_116938754_116938859_116943885
ENSMUST00000106462.9	chr4	+	1112	10	FSM	ENSMUSG00000028689.15	ENSMUST00000106462.9	1112	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	24.3680624821877	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTTCTCTGTAAATCTT	5618	False	NA	15	True	AATAAA	-19	NA	116565767	116572300	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_116565854_116566458_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
ENSMUST00000106464.3	chr4	+	1213	10	FSM	ENSMUSG00000028689.15	ENSMUST00000106464.3	1213	10	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	20.3239201040316	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTTCTCTGTAAATCTT	5977	False	NA	15	True	AATAAA	-19	NA	116566126	116572300	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_116566292_116566436_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
ENSMUST00000106466.10	chr3	-	1484	5	FSM	ENSMUSG00000028133.18	ENSMUST00000106466.10	1484	5	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	13.1244047484067	771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTTGTGTCTGAGAAGGA	NA	False	NA	NA	False	ATTAAA	-23	NA	120965344	120949046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_120949707_120949835_120949952_120950049_120950166_120952416_120952905_120965240
ENSMUST00000106470.8	chr4	+	877	6	FSM	ENSMUSG00000028691.13	ENSMUST00000106470.8	877	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9266.17147693696	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCAGGCAGCATTGAGCA	NA	False	NA	NA	False	NA	NA	NA	116543083	116556469	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_116543334_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
ENSMUST00000106475.2	chr4	+	2642	12	FSM	ENSMUSG00000034042.17	ENSMUST00000106475.2	2642	12	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	94.7459412768154	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTTGTTGAATACTTCA	NA	False	NA	NA	False	TATAAA	-18	NA	116415275	116450233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_116415347_116426360_116427379_116428067_116428181_116430590_116430721_116431533_116431812_116436443_116436517_116438446_116438641_116444567_116444709_116445775_116445941_116447362_116447488_116448425_116448529_116450002
ENSMUST00000106478.9	chr4	-	1962	5	FSM	ENSMUSG00000055900.15	ENSMUST00000106478.9	1962	5	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	29.1150734156725	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTGCCTTGGTCAT	NA	False	NA	-108	True	NA	NA	NA	116413133	116408829	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_116409321_116409518_116409542_116409678_116410927_116411964_116412101_116413069
ENSMUST00000106479.8	chr4	+	2118	9	FSM	ENSMUSG00000028696.13	ENSMUST00000106479.8	2118	9	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_7	9.43977621556783	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTTAGCAACAGTACAA	NA	False	NA	NA	False	AATAAA	-19	NA	116364745	116395432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_116364848_116367718_116368061_116372264_116372697_116377855_116378012_116381382_116381551_116386867_116387006_116387609_116387733_116389754_116389976_116394996
ENSMUST00000106489.9	chr7	+	3047	18	FSM	ENSMUSG00000035064.18	ENSMUST00000106489.9	3047	18	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	20.5168510369059	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGGCCTTTATACATGC	NA	False	NA	9	True	AATATA	-16	NA	120442822	120503224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_120443009_120457566_120457886_120472531_120472633_120475654_120475716_120479036_120479075_120479527_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
ENSMUST00000106499.8	chr11	-	2333	4	FSM	ENSMUSG00000059923.14	ENSMUST00000106499.8	2333	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	445.346556689906	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGTCTTCATTTCTCC	724	False	NA	-1	True	AATAAA	-19	NA	115590133	115534870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115536781_115537535_115537705_115546183_115546282_115589977
ENSMUST00000106507.9	chr11	-	1656	5	FSM	ENSMUSG00000020743.16	ENSMUST00000106507.9	1656	5	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	39.92101576864	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503329	115498743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728
ENSMUST00000106513.10	chr4	+	2552	14	FSM	ENSMUSG00000028708.17	ENSMUST00000106513.10	2552	14	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	55.5404857930697	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696429	115736447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_115696479_115702818_115702863_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
ENSMUST00000106516.2	chr7	+	1069	4	FSM	ENSMUSG00000030922.13	ENSMUST00000106516.2	1069	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	24.9977776790036	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGTTTTGTTGATTTT	NA	False	NA	12	True	TATAAA	-23	NA	119499330	119515979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_119499532_119509026_119509186_119513395_119513489_119515363
ENSMUST00000106523.8	chr7	-	973	9	FSM	ENSMUSG00000030929.18	ENSMUST00000106523.8	973	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	25.2128439490669	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAACTCACAAGTCAGGA	NA	False	NA	NA	False	AATAAA	-13	NA	119393190	119367901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_119368116_119385961_119386051_119386626_119386709_119386956_119387058_119389456_119389614_119390323_119390452_119391487_119391572_119391653_119391722_119393140
ENSMUST00000106536.8	chr3	-	1839	15	FSM	ENSMUSG00000027981.15	ENSMUST00000106536.8	1839	15	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_8	14.9497457489813	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTCTAATTTTTCATTA	NA	False	NA	-1	True	AATAAA	-16	NA	113423798	113399112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_113399297_113401988_113402061_113402686_113402820_113404706_113404766_113404857_113404953_113407406_113407566_113409011_113409161_113410396_113410523_113413673_113413817_113414757_113414827_113415480_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
ENSMUST00000106537.8	chr11	-	682	7	FSM	ENSMUSG00000034566.11	ENSMUST00000106537.8	682	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_6	1501.20529353361	51465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310743	115306514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115310017_115310120_115310717
ENSMUST00000106548.9	chr4	+	887	5	FSM	ENSMUSG00000028716.16	ENSMUST00000106548.9	887	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.87082869338697	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCACGGGCCTATTTCT	NA	False	NA	NA	False	NA	NA	NA	114945919	114951096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_114946004_114946235_114946410_114948338_114948448_114950117_114950214_114950672
ENSMUST00000106553.8	chr7	+	3018	30	FSM	ENSMUSG00000030982.20	ENSMUST00000106553.8	3018	30	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_21	118.758810925395	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCAGTGTCTCGGTGTGTG	NA	False	NA	10	True	ATTAAA	-21	NA	118339969	118440712	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587_118365648_118372243_118372341_118373222_118373271_118374514_118374609_118378910_118378989_118379399_118379523_118389232_118389280_118390590_118390703_118391784_118391902_118393764_118393819_118396188_118396270_118399660_118399724_118400483_118400570_118406213_118406278_118409100_118409200_118411027_118411106_118412752_118412868_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418
ENSMUST00000106567.2	chr3	-	2450	1	FSM	ENSMUSG00000049300.12	ENSMUST00000106567.2	2450	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	256	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTGCTGGGGCTCTATT	NA	False	NA	-12	True	ATTAAA	-19	NA	110158314	110155864	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_110155900_110158300
ENSMUST00000106588.8	chr7	-	640	5	FSM	ENSMUSG00000008683.17	ENSMUST00000106588.8	640	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	4296.69669630054	95034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117714900	117708286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117714694
ENSMUST00000106596.4	chr3	-	553	5	FSM	ENSMUSG00000027882.19	ENSMUST00000106596.4	553	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	53.7331368896326	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTTGTACTGCTCCCA	NA	False	NA	NA	False	AATAAA	-21	NA	108747826	108732933	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_108733187_108733321_108733399_108734341_108734424_108734888_108734939_108747735
ENSMUST00000106599.8	chr11	+	457	4	FSM	ENSMUSG00000057322.13	ENSMUST00000106599.8	457	4	0	0	0	0	multi-exon	FALSE	canonical	3	12129	junction_3	3589.14031799012	213787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559434	114563157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_114559641_114559731_114559793_114562559_114562683_114563090
ENSMUST00000106602.10	chr11	+	371	5	FSM	ENSMUSG00000057322.13	ENSMUST00000106602.10	371	5	0	0	0	0	multi-exon	FALSE	canonical	3	6598	junction_1	5536.08152825625	290311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559349	114563157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_114559436_114559606_114559641_114559731_114559793_114562559_114562683_114563090
ENSMUST00000106607.2	chr7	+	1153	3	FSM	ENSMUSG00000030663.13	ENSMUST00000106607.2	1153	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	845.5	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGATTGTGATGCCTT	NA	False	NA	26	True	AATAAA	-17	NA	115692575	115704442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_115692623_115702445_115702556_115703446
ENSMUST00000106609.8	chr3	+	2043	12	FSM	ENSMUSG00000027884.17	ENSMUST00000106609.8	2043	12	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_1	36.8117839559091	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6596	False	NA	6	True	AATAAA	-18	NA	108561228	108586156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_108561297_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
ENSMUST00000106617.8	chr11	-	1123	7	FSM	ENSMUSG00000018727.20	ENSMUST00000106617.8	1123	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	84.0094240745247	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113599793	113588997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_113589493_113590661_113590740_113592881_113592922_113593238_113593336_113594096_113594193_113597242_113597396_113599629
ENSMUST00000106621.4	chr11	+	2062	5	FSM	ENSMUSG00000041623.18	ENSMUST00000106621.4	2062	5	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_1	30.335622624235	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575272	113585473	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_113575538_113578599_113580048_113582554_113582660_113583220_113583329_113585337
ENSMUST00000106622.3	chr3	-	2752	3	FSM	ENSMUSG00000068732.6	ENSMUST00000106622.3	2752	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	80.5	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGCCTGCTTTGTCAT	5570	False	NA	-14	True	AATAAA	-15	NA	108469486	108463740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_108466277_108467502_108467635_108469402
ENSMUST00000106633.10	chr11	-	2688	10	FSM	ENSMUSG00000041654.16	ENSMUST00000106633.10	2688	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	154.822558728882	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7766	False	NA	-2	True	AATAAA	-19	NA	113456585	113135678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
ENSMUST00000106736.3	chr3	+	1669	3	FSM	ENSMUSG00000056260.16	ENSMUST00000106736.3	1669	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	9.5	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTATGGCTTTGTTTTGT	NA	False	NA	31	True	AATAAA	-43	NA	106629208	106643893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_106629423_106641673_106641956_106642720
ENSMUST00000106749.8	chr4	+	607	6	FSM	ENSMUSG00000063172.14	ENSMUST00000106749.8	607	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_1	69.6746725862418	3219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCCATTTTTTTTATATAA	NA	False	NA	8	True	ATTAAA	-19	NA	107111099	107137135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_107111160_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
ENSMUST00000106927.2	chr4	+	1754	4	FSM	ENSMUSG00000035212.15	ENSMUST00000106927.2	1754	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	275.740215903786	2201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGTTGCATTTCATAAA	8290	False	NA	8	True	AATAAA	-20	NA	101504989	101516561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_101505023_101509595_101509672_101513374_101513493_101515034
ENSMUST00000106945.8	chr4	+	4175	6	FSM	ENSMUSG00000028527.19	ENSMUST00000106945.8	4175	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	107.967402487973	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGATGGAATTTCATAA	NA	False	NA	19	True	AATAAA	-17	NA	101276515	101324192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_101276599_101276925_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749
ENSMUST00000106966.8	chr7	-	821	5	FSM	ENSMUSG00000064307.14	ENSMUST00000106966.8	821	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.93700393700591	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAAGTCCCCTGTACCTT	2525	False	NA	NA	False	AATAAA	-22	NA	101583075	101562196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_101562420_101562641_101562791_101564768_101564975_101569843_101569982_101582970
ENSMUST00000106978.8	chr7	+	841	6	FSM	ENSMUSG00000030649.19	ENSMUST00000106978.8	841	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	219.67922068325	1144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTCTATTCCCTGTTTGT	NA	False	NA	24	True	AATAAA	-24	NA	101530531	101548750	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_101530610_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
ENSMUST00000106981.8	chr7	-	960	4	FSM	ENSMUSG00000001827.13	ENSMUST00000106981.8	960	4	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_2	18.9267594221045	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	8098	False	NA	0	True	AATAAA	-31	NA	101513352	101507537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131
ENSMUST00000106982.8	chr7	-	1039	5	FSM	ENSMUSG00000001827.13	ENSMUST00000106982.8	1039	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	136.80711787038	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	4836	False	NA	0	True	AATAAA	-31	NA	101516614	101507537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101516484
ENSMUST00000106986.9	chr7	-	1286	7	FSM	ENSMUSG00000001827.13	ENSMUST00000106986.9	1286	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	140.150415229099	1088	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	1560	False	NA	0	True	AATAAA	-31	NA	101519890	101507537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517759_101518363_101518512_101519815
ENSMUST00000107009.8	chr11	-	1853	9	FSM	ENSMUSG00000034187.19	ENSMUST00000107009.8	1853	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_8	133.041346956501	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACCAG	NA	False	NA	NA	False	NA	NA	NA	103844850	103800251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103821901_103821950_103844795
ENSMUST00000107037.8	chr11	+	1221	3	FSM	ENSMUSG00000043372.13	ENSMUST00000107037.8	1221	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	7	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAGTGGCTACAATTGA	NA	False	NA	NA	False	ATTAAA	-18	NA	103024139	103030017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_103024249_103024860_103024968_103029012
ENSMUST00000107044.10	chr7	-	1806	7	FSM	ENSMUSG00000030701.18	ENSMUST00000107044.10	1806	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	4.3365372770859	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGGCTTTGCTTGTTT	NA	False	NA	-2	True	AATAAA	-16	NA	100307663	100293106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_100294277_100294776_100294877_100302860_100302901_100303808_100303912_100304455_100304609_100305941_100306018_100307499
ENSMUST00000107076.10	chr3	+	2858	14	FSM	ENSMUSG00000028101.19	ENSMUST00000107076.10	2858	14	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	28.3212760050852	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	2588	False	NA	5	True	AATAAA	-15	NA	96603699	96613278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96603848_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
ENSMUST00000107077.4	chr3	+	2695	15	FSM	ENSMUSG00000028101.19	ENSMUST00000107077.4	2695	15	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	45.7727304969111	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGGGGAAGGGATGTTGT	3321	False	NA	16	True	AATAAA	-26	NA	96604432	96613289	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96604512_96606735_96606970_96607074_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
ENSMUST00000107081.8	chr11	-	818	3	FSM	ENSMUSG00000078640.10	ENSMUST00000107081.8	818	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	3.5	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTCTTTTTTTTT	8238	False	NA	NA	False	NA	NA	NA	102470287	102467223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102467624_102469575_102469722_102470015
ENSMUST00000107098.8	chr11	-	1606	12	FSM	ENSMUSG00000018677.10	ENSMUST00000107098.8	1606	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	1380.93231173247	2628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAACCAA	7743	False	NA	NA	False	NA	NA	NA	102298315	102293810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296629_102297031_102297077_102297187_102297248_102297380_102297481_102298215
ENSMUST00000107107.9	chr4	-	2784	14	FSM	ENSMUSG00000028577.14	ENSMUST00000107107.9	2784	14	0	0	0	0	multi-exon	FALSE	canonical	3	626	junction_12	53.7532164993284	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTGAGGTTTTCCTGTG	NA	False	NA	-12	True	AATAAA	-15	NA	94491481	94457403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_94458147_94459923_94460089_94462218_94462321_94463402_94463472_94466623_94466693_94470717_94470938_94471650_94471809_94472069_94472240_94474531_94474668_94474989_94475158_94475517_94475639_94475723_94475825_94478117_94478312_94491113
ENSMUST00000107112.2	chr7	-	2232	13	FSM	ENSMUSG00000035547.15	ENSMUST00000107112.2	2232	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_12	45.8223471681668	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTAATGCAGTTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	97811549	97772867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_97773263_97774448_97774586_97775035_97775152_97775452_97775650_97777679_97777803_97778450_97778647_97780397_97780476_97780882_97781077_97782039_97782233_97784966_97785176_97801018_97801151_97811122_97811318_97811482
ENSMUST00000107131.2	chr4	-	895	3	FSM	ENSMUSG00000044303.7	ENSMUST00000107131.2	895	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	1	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGGCCGCGAAGGGAATAA	NA	False	NA	-73	True	NA	NA	NA	89212890	89192777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_89193012_89194881_89195223_89212570
ENSMUST00000107154.4	chr3	+	1444	16	FSM	ENSMUSG00000028109.15	ENSMUST00000107154.4	1444	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_15	107.711260114974	839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGTTTACCTGAGATA	NA	False	NA	NA	False	AATAAA	-15	NA	95466988	95494907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95492845_95492901_95494691
ENSMUST00000107156.9	chr11	-	2015	4	FSM	ENSMUSG00000020922.12	ENSMUST00000107156.9	2015	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	445.4737802485	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTCAGGTTTGTGC	6423	False	NA	-1	True	AATAAA	-23	NA	102076055	102053322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102054994_102056185_102056313_102057912_102058023_102075948
ENSMUST00000107187.9	chr3	+	2827	10	FSM	ENSMUSG00000038712.17	ENSMUST00000107187.9	2827	10	0	0	0	0	multi-exon	TRUE	canonical	3	130	junction_1	26.9118359384908	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCGTTCCTACCTTGGAG	NA	False	NA	15	True	AATAAA	-16	NA	95190254	95203477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
ENSMUST00000107229.2	chr3	-	724	2	FSM	ENSMUSG00000028126.17	ENSMUST00000107229.2	724	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	443	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCTTGTAGAGGAGTTG	1305	False	NA	NA	False	AATAAA	-33	NA	95014134	95004353	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95004630_95013686
ENSMUST00000107237.8	chr3	-	1332	10	FSM	ENSMUSG00000005625.16	ENSMUST00000107237.8	1332	10	0	0	0	0	multi-exon	FALSE	canonical	3	1001	junction_3	333.422654699207	14320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAATAGTGATAGCTTTG	NA	False	NA	-10	True	AATAAA	-25	NA	94949925	94940004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941228_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
ENSMUST00000107249.8	chr11	-	732	4	Antisense	novelGene_ENSMUSG00000063316.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	243776	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCGGCACCCAGCAGAAAG	1670	False	NA	NA	False	NA	NA	NA	101336355	101333271	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr11_-_101333632_101334326_101334497_101336045_101336157_101336264
ENSMUST00000107252.9	chr11	-	853	7	FSM	ENSMUSG00000097487.8	ENSMUST00000107252.9	853	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	3.45205252953466	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCCTTCCCTTCCTGTA	NA	False	NA	-10	True	AATAAA	-14	NA	101315495	101309637	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_101310013_101310500_101310555_101312690_101312781_101314605_101314705_101314802_101314870_101314980_101315095_101315441
ENSMUST00000107302.8	chr11	+	1826	8	FSM	ENSMUSG00000017801.16	ENSMUST00000107302.8	1826	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	91.1912097446562	794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTTAAGTCCTTGT	8223	False	NA	18	True	AATAAA	-22	NA	100978102	100983033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_100978194_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
ENSMUST00000107303.10	chr11	+	1736	7	FSM	ENSMUSG00000017801.16	ENSMUST00000107303.10	1736	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	122.609701446863	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTTAAGTCCTTGT	8223	False	NA	18	True	AATAAA	-22	NA	100978102	100983033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_100978194_100978579_100978617_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
ENSMUST00000107308.4	chr11	+	2386	9	FSM	ENSMUSG00000001755.13	ENSMUST00000107308.4	2386	9	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_1	20.9388992069784	1266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3571	False	NA	25	True	ATTAAA	-16	NA	100973450	100977445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
ENSMUST00000107340.2	chr3	-	577	3	FSM	ENSMUSG00000044080.10	ENSMUST00000107340.2	577	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	187.5	2299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAATGTCTGTACCCT	NA	False	NA	-6	True	AATAAA	-17	NA	90421585	90418343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_90418672_90419285_90419457_90421507
ENSMUST00000107364.8	chr11	-	1915	6	FSM	ENSMUSG00000019173.12	ENSMUST00000107364.8	1915	6	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_2	14.961283367412	1014	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAAGATTGTTGGTGTCT	NA	False	NA	-10	True	ATTAAA	-17	NA	100629041	100605834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100606989_100607583_100607678_100608667_100608791_100609256_100609409_100610740_100610995_100628903
ENSMUST00000107366.2	chr4	+	3191	2	FSM	ENSMUSG00000051675.14	ENSMUST00000107366.2	3191	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTCATGTCTTAATT	NA	False	NA	20	True	AATAAA	-21	NA	65523222	65534475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_65523307_65531368
ENSMUST00000107369.2	chr3	-	1404	10	FSM	ENSMUSG00000027938.12	ENSMUST00000107369.2	1404	10	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_7	1.89215404065849	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCAAGTTTTTCACTATG	NA	False	NA	NA	False	AATAAA	-19	NA	90150450	90144876	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_90145229_90145356_90145454_90145618_90145704_90145789_90145859_90145951_90146059_90146190_90146287_90149238_90149361_90149517_90149753_90150028_90150144_90150324
ENSMUST00000107384.10	chr7	-	1745	11	FSM	ENSMUSG00000030541.17	ENSMUST00000107384.10	1745	11	0	0	0	0	multi-exon	FALSE	canonical	3	1495	junction_5	201.26112391617	4040	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGATGTGTTTGTCC	NA	False	NA	-5	True	AAAAAG	-13	NA	79765140	79744593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
ENSMUST00000107389.8	chr11	-	4426	29	FSM	ENSMUSG00000020917.18	ENSMUST00000107389.8	4426	29	0	0	0	0	multi-exon	FALSE	canonical	3	1365	junction_16	642.699119466695	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGATGCTCTTTTATGTTC	NA	False	NA	-14	True	AATAAA	-18	NA	100418826	100367178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
ENSMUST00000107397.2	chr11	-	1348	8	FSM	ENSMUSG00000017176.18	ENSMUST00000107397.2	1348	8	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_1	42.2470866040561	2364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTGGATGCACGCGTCTTT	NA	False	NA	-8	True	ATTAAA	-13	NA	100331754	100320184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654
ENSMUST00000107406.2	chr11	-	1062	5	FSM	ENSMUSG00000053654.8	ENSMUST00000107406.2	1062	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	11.3688170009021	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCATCATTTGTCCTGT	NA	False	NA	-6	True	AATAAA	-23	NA	100156804	100153707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425
ENSMUST00000107409.5	chr7	-	2008	9	FSM	ENSMUSG00000030605.16	ENSMUST00000107409.5	2008	9	0	0	0	0	multi-exon	FALSE	canonical	3	790	junction_6	144.155948541848	2276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTGCCTCCTCATTG	NA	False	NA	-5	True	AATACA	-19	NA	78798801	78783515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78794994_78795127_78795369_78795493_78798642
ENSMUST00000107417.9	chr3	+	3079	13	FSM	ENSMUSG00000042626.14	ENSMUST00000107417.9	3079	13	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	89.6222008705928	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGCCTCTCAACTCCTC	NA	False	NA	20	True	ATTAAA	-17	NA	89325920	89337322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89326017_89329484_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
ENSMUST00000107421.8	chr7	+	2007	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107421.8	2007	4	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	165.023903992388	1880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAACTGGTCCTTTCTGG	NA	False	NA	NA	False	AATAAA	-18	NA	78545681	78558129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_78545763_78552091_78552579_78555590_78555792_78556891
ENSMUST00000107422.2	chr3	-	766	3	FSM	ENSMUSG00000028044.7	ENSMUST00000107422.2	766	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	1287.5	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGTATTGGAAATTTTGC	NA	False	NA	23	True	NA	NA	NA	89325324	89322863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89323271_89323580_89323709_89325093
ENSMUST00000107423.2	chr7	+	2230	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107423.2	2230	4	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	306.901721511409	1936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGAACTGGTCCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	78545756	78558126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_78545950_78551977_78552579_78555590_78555792_78556891
ENSMUST00000107444.8	chr4	-	1247	12	FSM	ENSMUSG00000028393.11	ENSMUST00000107444.8	1247	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	192.970301316246	1441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGTGCCCTCTTCCTGC	NA	False	NA	-1	True	AGTAAA	-18	NA	62438131	62427405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62438031
ENSMUST00000107459.2	chr4	-	654	3	FSM	ENSMUSG00000066149.12	ENSMUST00000107459.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	175	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGCTTAACTGATTTTTG	2681	False	NA	NA	False	NA	NA	NA	62326862	62312870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_62313259_62320960_62321153_62326788
ENSMUST00000107460.8	chr3	-	785	5	FSM	ENSMUSG00000027953.14	ENSMUST00000107460.8	785	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	61.7758043249944	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177802	89175552	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89175906_89175979_89176100_89177133_89177258_89177368_89177447_89177692
ENSMUST00000107462.8	chr3	+	827	3	FSM	ENSMUSG00000042737.10	ENSMUST00000107462.8	827	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	269	9519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTGTGTAGTTTTGAGT	1838	False	NA	17	True	ATTAAA	-18	NA	89166664	89174384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89166899_89173669_89173914_89174035
ENSMUST00000107471.8	chr7	+	2216	11	FSM	ENSMUSG00000030555.17	ENSMUST00000107471.8	2216	11	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	12.2429571591181	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTTTGTGTGTTTGAAA	NA	False	NA	13	True	AATAAA	-18	NA	67297172	67376324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_67297594_67312074_67312275_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
ENSMUST00000107491.11	chr3	-	1375	12	FSM	ENSMUSG00000068921.15	ENSMUST00000107491.11	1375	12	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	248.490151458566	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88857258	88830941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88831221_88832600_88832719_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
ENSMUST00000107495.5	chr7	+	1003	6	FSM	ENSMUSG00000078681.11	ENSMUST00000107495.5	1003	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	226.65709783724	1002	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAACTTTTTATTTGCCTG	NA	False	NA	28	True	AATAAA	-28	NA	65343164	65351661	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_65343318_65343598_65343692_65344890_65345076_65347443_65347619_65348839_65348916_65351340
ENSMUST00000107553.8	chr3	-	2053	4	FSM	ENSMUSG00000001420.14	ENSMUST00000107553.8	2053	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	8.48528137423857	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGTGGCTCGTTCATT	NA	False	NA	NA	False	AATAAA	-11	NA	88241575	88236352	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88237240_88239746_88239961_88240198_88240990_88241414
ENSMUST00000107556.10	chr3	-	584	4	FSM	ENSMUSG00000010538.15	ENSMUST00000107556.10	584	4	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_3	20.138409955991	1214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACATGGGTCTGAGTCT	NA	False	NA	NA	False	CATAAA	-14	NA	88204306	88190063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88190292_88194404_88194525_88202697_88202758_88204130
ENSMUST00000107583.3	chr11	+	737	3	FSM	ENSMUSG00000078695.9	ENSMUST00000107583.3	737	3	0	0	0	0	multi-exon	FALSE	canonical	3	940	junction_1	75.5	7468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2452	False	NA	-1	True	AATAAA	-21	NA	97576778	97579447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_97577042_97577326_97577447_97579093
ENSMUST00000107584.8	chr11	+	546	4	FSM	ENSMUSG00000078695.9	ENSMUST00000107584.8	546	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	467.239410438232	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2325	False	NA	-1	True	AATAAA	-21	NA	97576651	97579447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_97576691_97577008_97577042_97577326_97577447_97579093
ENSMUST00000107624.8	chr11	-	3055	7	FSM	ENSMUSG00000018678.14	ENSMUST00000107624.8	3055	7	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_6	154.880599172395	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGTCTGCGTTTGGCAGT	NA	False	NA	-17	True	AATAAA	-16	NA	96868537	96844166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_96845397_96846600_96846795_96846930_96847106_96848249_96848563_96851863_96852836_96854190_96854271_96868446
ENSMUST00000107661.10	chr11	-	2197	8	FSM	ENSMUSG00000020876.15	ENSMUST00000107661.10	2197	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_6	17.839419776416	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTGTTGTTGCAATTTG	NA	False	NA	-16	True	AATAAA	-13	NA	96668385	96658702	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96667793_96667888_96668280
ENSMUST00000107684.2	chr11	-	596	5	FSM	ENSMUSG00000006057.16	ENSMUST00000107684.2	596	5	0	0	0	0	multi-exon	FALSE	canonical	3	5157	junction_4	2293.78611688187	93282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCATGTGCCTGTGCCT	3530	False	NA	-9	True	NA	NA	NA	95966445	95963815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966382
ENSMUST00000107686.8	chr11	-	691	5	FSM	ENSMUSG00000006057.16	ENSMUST00000107686.8	691	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_4	4410.8346149	62521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATGTGCCTGTGCCTGTC	3568	False	NA	-6	True	NA	NA	NA	95966407	95963812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966252
ENSMUST00000107696.2	chr4	+	2965	3	FSM	ENSMUSG00000039634.13	ENSMUST00000107696.2	2965	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	6.5	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAATAAAAAAAATGACCT	-39	True	NA	NA	False	AAGAAA	-35	NA	49521216	49531517	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_49521596_49522397_49522483_49529016
ENSMUST00000107700.4	chr11	+	849	7	FSM	ENSMUSG00000006058.11	ENSMUST00000107700.4	849	7	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	239.545866635645	892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTTCCCCCAGTAT	3277	False	NA	21	True	AATAAA	-43	NA	95925790	95938256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95932450_95932556_95934229_95934303_95935986_95936129_95938020
ENSMUST00000107704.2	chr4	+	1597	3	FSM	ENSMUSG00000039693.12	ENSMUST00000107704.2	1597	3	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	75.5	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTTACACTGTGTATGTT	38	True	NA	15	True	NA	NA	NA	48540498	48561919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_48540569_48552379_48552831_48560843
ENSMUST00000107708.2	chr11	+	629	3	FSM	ENSMUSG00000038811.14	ENSMUST00000107708.2	629	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	5.5	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95734434	95736560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95734722_95735876_95735967_95736308
ENSMUST00000107711.8	chr11	+	563	4	FSM	ENSMUSG00000038811.14	ENSMUST00000107711.8	563	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	5.71547606649408	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95733134	95736560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95733253_95734637_95734722_95735857_95735967_95736308
ENSMUST00000107714.9	chr11	+	558	4	FSM	ENSMUSG00000038811.14	ENSMUST00000107714.9	558	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	4.54606056566195	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95733120	95736560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95733253_95734637_95734722_95735876_95735967_95736308
ENSMUST00000107722.8	chr11	+	3063	10	FSM	ENSMUSG00000057522.16	ENSMUST00000107722.8	3063	10	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_3	21.694853460364	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCTGTCATTGATGTA	NA	False	NA	NA	False	AATAAA	-20	NA	95304923	95384232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
ENSMUST00000107723.9	chr7	-	1898	7	FSM	ENSMUSG00000053801.19	ENSMUST00000107723.9	1898	7	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_1	34.207292919623	845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTCCTCTGAGCTTCTT	8634	False	NA	-4	True	AATAAA	-31	NA	45480213	45474650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45479715_45479834_45480018
ENSMUST00000107724.9	chr11	+	2881	11	FSM	ENSMUSG00000057522.16	ENSMUST00000107724.9	2881	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	65.0422170593838	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCTGTCATTGATGTA	NA	False	NA	NA	False	AATAAA	-20	NA	95304905	95384232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95304958_95305157_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
ENSMUST00000107733.10	chr11	-	3470	14	FSM	ENSMUSG00000038909.17	ENSMUST00000107733.10	3470	14	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_9	177.090656421269	516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201072	95165084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
ENSMUST00000107734.10	chr11	-	3560	15	FSM	ENSMUSG00000038909.17	ENSMUST00000107734.10	3560	15	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_10	130.748239149965	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201072	95165084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
ENSMUST00000107752.12	chr7	+	1400	9	FSM	ENSMUSG00000030825.20	ENSMUST00000107752.12	1400	9	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_3	205.455591308682	2203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGAGTGGTCGTGTCCT	NA	False	NA	10	True	NA	NA	NA	45204316	45216745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45204491_45205478_45205518_45205736_45205820_45207031_45207099_45208804_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
ENSMUST00000107758.10	chr7	+	1597	10	FSM	ENSMUSG00000023467.19	ENSMUST00000107758.10	1597	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	26.8989880024427	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTTCTGTGCGTTTGGA	6743	False	NA	17	True	AATAAA	-18	NA	45135787	45171806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45135908_45165662_45165801_45165939_45166111_45167203_45167392_45168009_45168331_45169154_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
ENSMUST00000107771.12	chr7	+	1834	15	Antisense	novelGene_ENSMUSG00000003868.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8363	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGCCTACAGCTGAGATT	8840	False	NA	NA	False	NA	NA	NA	45071321	45084047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr7_+_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
ENSMUST00000107803.7	chr3	+	3983	24	FSM	ENSMUSG00000034349.15	ENSMUST00000107803.7	3983	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	208.165994546286	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAATGACAAGTTTCCTGT	NA	False	NA	15	True	TATAAA	-16	NA	68912323	68941951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_68912424_68913408_68913547_68914596_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
ENSMUST00000107808.3	chr4	-	679	3	FSM	ENSMUSG00000078713.9	ENSMUST00000107808.3	679	3	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	2	20127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGGTTTTGTGTTTT	-10	True	NA	NA	False	AATAAA	-14	NA	45108108	45105211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_45105645_45106838_45106889_45107912
ENSMUST00000107809.9	chr4	-	738	3	FSM	ENSMUSG00000078713.9	ENSMUST00000107809.9	738	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	3	1333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGGTTTTGTGTTTT	60	False	NA	NA	False	AATAAA	-14	NA	45108038	45105211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_45105645_45106614_45106794_45107912
ENSMUST00000107810.3	chr4	-	639	2	FSM	ENSMUSG00000078713.9	ENSMUST00000107810.3	639	2	0	0	0	0	multi-exon	FALSE	canonical	3	2176	junction_1	0	22171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGTTTTGTGTTTTTAAT	-16	True	NA	NA	False	AATAAA	-18	NA	45108114	45105207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_45105645_45107912
ENSMUST00000107811.4	chr7	+	1072	10	FSM	ENSMUSG00000003423.16	ENSMUST00000107811.4	1072	10	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	115.619106456406	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCCAGACAATGATGCATG	NA	False	NA	21	True	AATAAA	-21	NA	44805366	44809489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44805480_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUST00000107820.2	chr11	-	3478	10	FSM	ENSMUSG00000020863.16	ENSMUST00000107820.2	3478	10	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_9	26.1850018328748	665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGATTGTCTGTGTCAT	NA	False	NA	-5	True	AATAAA	-23	NA	94212814	94181964	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ENSMUST00000107821.9	chr11	-	2050	11	FSM	ENSMUSG00000020863.16	ENSMUST00000107821.9	2050	11	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	26.33172990899	1714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATATGAGGCATACTAG	NA	False	NA	73	True	AATAAA	-27	NA	94212814	94181886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_94182405_94183910_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
ENSMUST00000107824.9	chr4	+	2503	9	FSM	ENSMUSG00000035649.18	ENSMUST00000107824.9	2503	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	42.9270820694815	319	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTAAATAAATGTGTTTA	-10	True	NA	NA	False	AATAAA	-14	NA	44756567	44932203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_44756693_44761849_44762475_44893532_44893571_44894915_44895042_44895818_44895990_44908450_44908487_44925974_44926071_44929117_44929236_44931035
ENSMUST00000107829.9	chr7	+	972	9	FSM	ENSMUSG00000003421.14	ENSMUST00000107829.9	972	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_6	164.802912595621	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGCCTGGCGCCTCATTG	3058	False	NA	27	True	AATAAA	-18	NA	44711852	44726840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44726050_44726164_44726244_44726354_44726735
ENSMUST00000107843.11	chr7	-	1508	11	FSM	ENSMUSG00000109324.3	ENSMUST00000107843.11	1508	11	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	1333.46760365597	5473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTCTCGCCCTGGGGCT	NA	False	NA	-30	True	AATAAA	-17	NA	44635992	44626181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44633503_44633558_44635706
ENSMUST00000107845.4	chr4	+	1031	5	FSM	ENSMUSG00000028478.19	ENSMUST00000107845.4	1031	5	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	565.255860208455	8309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	8	True	NA	21	True	AATAAA	-21	NA	44012685	44032846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_44013003_44018812_44018851_44019873_44019992_44025448_44025561_44032400
ENSMUST00000107849.10	chr4	+	1099	6	FSM	ENSMUSG00000028478.19	ENSMUST00000107849.10	1099	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	631.636794368409	4011	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	0	True	NA	21	True	AATAAA	-21	NA	44012677	44032846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_44013009_44018812_44018851_44019873_44019992_44025448_44025561_44030214_44030269_44032400
ENSMUST00000107868.8	chr11	-	2093	16	FSM	ENSMUSG00000020541.13	ENSMUST00000107868.8	2093	16	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_14	62.6969430408426	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGTGTTGTTGTTTTGTC	NA	False	NA	-2	True	ATTAAA	-17	NA	90578427	90536516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90563658_90563764_90564489_90564613_90565495_90565646_90574060_90574157_90575887_90575973_90578338
ENSMUST00000107876.8	chr7	+	1770	17	FSM	ENSMUSG00000002963.18	ENSMUST00000107876.8	1770	17	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	53.8118466859297	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCCATCTTGCTGGG	9315	False	NA	15	True	AATAAA	-17	NA	44506562	44512074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44506727_44506818_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
ENSMUST00000107903.8	chr11	-	3721	11	FSM	ENSMUSG00000018428.16	ENSMUST00000107903.8	3721	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	272.1683302664	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGTCCATTTTTTCTT	NA	False	NA	92	True	TATAAA	-7	NA	88742329	88721617	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88742176
ENSMUST00000107911.8	chr7	-	1988	10	FSM	ENSMUSG00000060601.14	ENSMUST00000107911.8	1988	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	219.110209599227	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTGAGCCCAGTGTGGA	NA	False	NA	-1	True	AATAAA	-30	NA	44203372	44199040	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202179_44203002_44203133_44203232
ENSMUST00000107914.10	chr4	-	1164	9	FSM	ENSMUSG00000028464.17	ENSMUST00000107914.10	1164	9	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	2.31503239718152	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGGCCCTTTAAGCCT	9769	False	NA	-14	True	AATAAA	-16	NA	43523595	43514710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_43514862_43518229_43518300_43518401_43518465_43519002_43519079_43519226_43519298_43519388_43519507_43519610_43519745_43522674_43522801_43523240
ENSMUST00000107922.3	chr4	+	865	5	FSM	ENSMUSG00000028461.13	ENSMUST00000107922.3	865	5	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_4	11.5433963806152	1852	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTCCTCTGTGCTT	1	True	NA	14	True	AGTAAA	-45	NA	43493388	43495921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341_43495433_43495508
ENSMUST00000107924.3	chr3	+	3157	6	FSM	ENSMUSG00000075700.11	ENSMUST00000107924.3	3157	6	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_4	12.1061967603372	1078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTGCTTTGTGAAAATG	NA	False	NA	15	True	AATAAA	-18	NA	58484056	58500554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115
ENSMUST00000107933.8	chr7	-	913	6	FSM	ENSMUSG00000008028.16	ENSMUST00000107933.8	913	6	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	8.25590697622012	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTTCTCTCGGCAAAGT	NA	False	NA	NA	False	TATAAA	-19	NA	44024454	44009466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44009806_44010473_44010608_44012075_44012197_44012366_44012440_44023746_44023949_44024410
ENSMUST00000107956.8	chr4	-	3107	9	FSM	ENSMUSG00000036002.13	ENSMUST00000107956.8	3107	9	0	0	0	0	multi-exon	TRUE	canonical	3	38	junction_5	6.5	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCTCTACTTTTTTTTG	409	False	NA	2	True	AATAAA	-21	NA	43045797	43032413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835_43036805_43037062_43037207_43045647
ENSMUST00000107992.2	chr7	-	3148	4	FSM	ENSMUSG00000069727.6	ENSMUST00000107992.2	3148	4	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_3	55.1784982277215	2507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCGTGTCCTGTGTTTA	NA	False	NA	NA	False	NA	NA	NA	42342142	42309528	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_42312421_42314181_42314243_42314441_42314569_42342074
ENSMUST00000108032.3	chr4	-	350	4	FSM	ENSMUSG00000073888.14	ENSMUST00000108032.3	350	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	26.6124448749494	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCACTGCCTCCCTGACTT	12	False	NA	NA	False	ATTAAA	-14	NA	41774158	41773187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_41773351_41773464_41773525_41773735_41773804_41774099
ENSMUST00000108037.9	chr4	-	590	6	FSM	ENSMUSG00000073888.14	ENSMUST00000108037.9	590	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	16.7020956768904	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTCTCTTTTATTTCA	28	False	NA	5	True	AATAAA	-28	NA	41774142	41769466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_41769655_41769843_41769977_41771137_41771236_41773464_41773525_41773735_41773804_41774099
ENSMUST00000108046.8	chr3	-	1409	4	FSM	ENSMUSG00000037161.15	ENSMUST00000108046.8	1409	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	91.1604202613295	903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTAGTCTTTCTTGTT	NA	False	NA	0	True	AATAAA	-17	NA	51303947	51295832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_51296745_51298646_51298741_51299245_51299350_51303648
ENSMUST00000108051.8	chr3	-	2514	7	FSM	ENSMUSG00000037174.19	ENSMUST00000108051.8	2514	7	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_6	34.1987654098149	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTACCTAGCACAGTATT	NA	False	NA	NA	False	ATTAAA	-18	NA	51184935	51163085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172428_51174173_51174288_51184625
ENSMUST00000108081.9	chr11	-	3034	14	FSM	ENSMUSG00000020530.15	ENSMUST00000108081.9	3034	14	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_13	134.623999724325	929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCCTCTTCCTTCCTCA	NA	False	NA	0	True	AATAAA	-16	NA	84761615	84723186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761430
ENSMUST00000108108.3	chr4	-	480	3	FSM	ENSMUSG00000071014.11	ENSMUST00000108108.3	480	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	1267.5	975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCACTGTCCGTGTTACT	2	True	NA	-11	True	AATAAA	-17	NA	40279409	40270664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_40270848_40272809_40272855_40279157
ENSMUST00000108116.10	chr7	-	2071	9	FSM	ENSMUSG00000001247.17	ENSMUST00000108116.10	2071	9	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	34.291945118351	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTAAGCCTCTTGTTTTG	NA	False	NA	-5	True	AATAAA	-15	NA	30672852	30657201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30665393_30665514_30671292_30671638_30672504
ENSMUST00000108127.4	chr4	-	3193	11	FSM	ENSMUSG00000028300.15	ENSMUST00000108127.4	3193	11	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_8	10.8355895086516	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATGTTTTAGTTCATT	NA	False	NA	-5	True	AATAAA	-16	NA	35225880	35191286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_35193069_35193184_35193295_35194136_35194195_35196972_35197209_35205767_35205885_35211291_35211365_35213008_35213074_35213548_35213645_35217212_35217273_35218413_35218917_35225787
ENSMUST00000108131.8	chr4	-	892	4	FSM	ENSMUSG00000028295.15	ENSMUST00000108131.8	892	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	75.9780670105963	936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	2	True	NA	NA	False	AATAAA	-6	NA	34778349	34768663	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_34769148_34771257_34771415_34771873_34772054_34778278
ENSMUST00000108134.8	chr4	-	782	3	FSM	ENSMUSG00000028295.15	ENSMUST00000108134.8	782	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	76	1903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	-13	True	NA	NA	False	AATAAA	-6	NA	34778364	34768663	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_34769148_34771257_34771415_34778223
ENSMUST00000108136.8	chr4	-	1688	11	FSM	ENSMUSG00000028294.16	ENSMUST00000108136.8	1688	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	1.88679622641132	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTACTGTGTATTTTTT	16	True	NA	NA	False	ATTAAA	-15	NA	34730178	34711331	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_34711596_34714394_34714536_34716304_34716504_34719044_34719165_34719572_34719782_34721415_34721575_34722607_34722797_34724814_34724906_34727904_34727989_34728795_34728909_34730059
ENSMUST00000108142.8	chr4	-	2266	20	FSM	ENSMUSG00000040044.12	ENSMUST00000108142.8	2266	20	0	0	0	0	multi-exon	FALSE	canonical	3	292	junction_6	92.190426792828	700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTGCTTCATTCTTGCT	-5	True	NA	-17	True	CATAAA	-21	NA	34614913	34570795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
ENSMUST00000108146.8	chr11	-	2389	4	FSM	ENSMUSG00000018733.11	ENSMUST00000108146.8	2389	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	16.4991582276861	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGACTTCTTGAAGTTT	2426	False	NA	-7	True	AATAAA	-16	NA	83189768	83185900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_83187267_83188313_83188868_83189141_83189380_83189537
ENSMUST00000108150.2	chr7	-	854	4	FSM	ENSMUSG00000006310.11	ENSMUST00000108150.2	854	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	35.0269737329517	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGACGAGTCCAGACTTTT	NA	False	NA	-2	True	AATAAA	-18	NA	30298294	30289107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30289633_30289780_30289946_30290220_30290295_30298204
ENSMUST00000108151.3	chr7	-	1775	6	FSM	ENSMUSG00000006310.11	ENSMUST00000108151.3	1775	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	31.6771210813104	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30292367	30289105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290481_30291391_30292336
ENSMUST00000108156.9	chr3	-	2687	19	FSM	ENSMUSG00000037325.11	ENSMUST00000108156.9	2687	19	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_12	6.84754619472471	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTGTCTTTATATATT	NA	False	NA	NA	False	ATTAAA	-21	NA	36667626	36627290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_36627772_36629442_36629567_36629693_36629798_36629891_36630002_36632544_36632710_36636774_36636915_36644800_36644867_36646513_36646589_36648516_36648710_36652414_36652518_36653487_36653573_36656977_36657109_36658554_36658672_36659832_36659906_36661669_36661857_36664328_36664505_36664714_36664778_36666160_36666227_36667398
ENSMUST00000108192.2	chr7	+	508	5	FSM	ENSMUSG00000019738.16	ENSMUST00000108192.2	508	5	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_4	46.0672063403024	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGTGTTTCCCGTGTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29931756	29932811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
ENSMUST00000108193.2	chr7	+	488	6	FSM	ENSMUSG00000019738.16	ENSMUST00000108193.2	488	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	479.289724488226	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTAGTGTTTCCCGTGTTT	NA	False	NA	13	True	AATAAA	-13	NA	29931756	29932810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_29931830_29931906_29931962_29932116_29932249_29932331_29932407_29932491_29932544_29932709
ENSMUST00000108195.10	chr3	-	659	6	FSM	ENSMUSG00000027679.14	ENSMUST00000108195.10	659	6	0	0	0	0	multi-exon	FALSE	canonical	3	3089	junction_3	262.703330774469	37647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTCATTGCTGACTTA	NA	False	NA	71	True	TATAAA	-1	NA	34135470	34131427	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232_34134307_34134379_34134432_34135334
ENSMUST00000108196.8	chr7	-	1192	10	FSM	ENSMUSG00000001794.14	ENSMUST00000108196.8	1192	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_9	490.288577155219	528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGGACTCTGAGTGCTGA	NA	False	NA	-28	True	AATAAA	-21	NA	29892531	29886414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29892454
ENSMUST00000108237.2	chr7	+	1086	7	FSM	ENSMUSG00000030588.13	ENSMUST00000108237.2	1086	7	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_5	686.982471877316	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATGGGGGGCCTTCTTCT	6160	False	NA	24	True	NA	NA	NA	28937876	28947018	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28938037_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945325_28945420_28946661
ENSMUST00000108238.8	chr7	+	1126	8	FSM	ENSMUSG00000030588.13	ENSMUST00000108238.8	1126	8	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_1	273.775194535329	6628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6037	False	NA	12	True	AATAAA	-15	NA	28937753	28946954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28937862_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ENSMUST00000108240.3	chr4	+	1406	12	FSM	ENSMUSG00000028252.21	ENSMUST00000108240.3	1406	12	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_11	64.4238290701982	1112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTAGTTTTCTGGATTTT	-5	True	NA	12	True	AATAAA	-14	NA	21727754	21747962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482
ENSMUST00000108258.8	chr3	+	2139	4	FSM	ENSMUSG00000037661.15	ENSMUST00000108258.8	2139	4	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	77.1895214535122	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910163	30951339	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_30910395_30931383_30931711_30944090_30944191_30949858
ENSMUST00000108259.8	chr3	+	1916	3	FSM	ENSMUSG00000037661.15	ENSMUST00000108259.8	1916	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	143	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910098	30951339	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_30910207_30931383_30931711_30949858
ENSMUST00000108261.8	chr3	+	2213	4	FSM	ENSMUSG00000037661.15	ENSMUST00000108261.8	2213	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	104.473282070904	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910098	30951339	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_30910404_30931383_30931711_30944090_30944191_30949858
ENSMUST00000108268.10	chr11	-	1520	10	FSM	ENSMUSG00000001123.16	ENSMUST00000108268.10	1520	10	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_9	3.82970843102535	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGATGGCTGGCTTATT	NA	False	NA	3	True	AATAAA	-29	NA	78875772	78853799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_78854368_78856517_78856681_78856823_78856913_78857702_78857745_78858269_78858321_78858823_78858860_78862142_78862254_78863813_78864016_78867438_78867528_78875603
ENSMUST00000108269.10	chr11	-	1586	11	FSM	ENSMUSG00000001123.16	ENSMUST00000108269.10	1586	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	7.48398289682706	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATGTGAGATGGCTGGC	NA	False	NA	-2	True	AATAAA	-24	NA	78875750	78853804	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_78854368_78856517_78856681_78856823_78856913_78857702_78857745_78858269_78858321_78858823_78858860_78860539_78860633_78862142_78862254_78863813_78864016_78867438_78867528_78875603
ENSMUST00000108275.2	chr11	+	582	5	FSM	ENSMUSG00000001105.16	ENSMUST00000108275.2	582	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	91.1125677390337	1278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGCACCCCA	NA	False	NA	40	True	NA	NA	NA	78427268	78432315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78427403_78429659_78429789_78430785_78430872_78431720_78431825_78432186
ENSMUST00000108278.9	chr7	+	1806	8	FSM	ENSMUSG00000030598.16	ENSMUST00000108278.9	1806	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_7	33.4310133418242	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	28416256	28437563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763_28436972_28437089
ENSMUST00000108279.9	chr7	+	1563	7	FSM	ENSMUSG00000030598.16	ENSMUST00000108279.9	1563	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	37.5340586075574	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	28416297	28437569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28437089
ENSMUST00000108281.8	chr7	+	1948	5	FSM	ENSMUSG00000037463.15	ENSMUST00000108281.8	1948	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	9.31396800509858	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGTTCATATCTTTTT	9140	False	NA	NA	False	AATAAA	-16	NA	28392568	28398760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28393076_28394155_28394268_28394430_28394527_28396064_28396201_28397663
ENSMUST00000108283.8	chr7	-	2899	10	FSM	ENSMUSG00000030602.14	ENSMUST00000108283.8	2899	10	0	0	0	0	multi-exon	TRUE	canonical	3	622	junction_9	35.4843036069349	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTATGTGTGTGGT	4596	False	NA	-3	True	ATTAAA	-21	NA	28297610	28258243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28259231_28259569_28259705_28260223_28260350_28261962_28262090_28262372_28262507_28263630_28264072_28264237_28264697_28267458_28267724_28269217_28269292_28297459
ENSMUST00000108292.9	chr7	+	657	7	FSM	ENSMUSG00000060791.16	ENSMUST00000108292.9	657	7	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	45.6070170039655	4203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGACATGGTATCTGCAAAAT	1815	False	NA	NA	False	AATAAA	-26	NA	28136871	28145971	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28137000_28140858_28140956_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
ENSMUST00000108300.8	chr3	-	4086	25	FSM	ENSMUSG00000027699.20	ENSMUST00000108300.8	4086	25	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_24	111.161098998506	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTATGTGTCCTGTCAT	1827	False	NA	NA	False	AATAAA	-20	NA	27208010	27151370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207865
ENSMUST00000108317.3	chr11	+	1359	4	FSM	ENSMUSG00000044122.16	ENSMUST00000108317.3	1359	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	3.74165738677394	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGCCTGCCTCTCCATCC	NA	False	NA	NA	False	AATAAA	-17	NA	78085559	78096589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78085781_78092637_78092719_78094890_78095024_78095665
ENSMUST00000108322.9	chr11	+	1685	10	FSM	ENSMUSG00000002059.19	ENSMUST00000108322.9	1685	10	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	10.0443461155462	1344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	6374	False	NA	21	True	ATTAAA	-15	NA	78079604	78083014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
ENSMUST00000108324.4	chr4	+	2908	12	FSM	ENSMUSG00000028212.17	ENSMUST00000108324.4	2908	12	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	27.8285779741998	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGAAAAAAATGGCATCAC	309	False	NA	NA	False	NA	NA	NA	11191729	11204682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_11191816_11192680_11192718_11192814_11192912_11192992_11193047_11193925_11194078_11195019_11195156_11197152_11197300_11198728_11198825_11199296_11199432_11201304_11201417_11202189_11202348_11202984
ENSMUST00000108338.2	chr11	+	714	3	FSM	ENSMUSG00000019437.18	ENSMUST00000108338.2	714	3	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGTTCCTCAGCTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	78069587	78070701	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78069883_78070195_78070279_78070365
ENSMUST00000108358.8	chr7	+	951	4	FSM	ENSMUSG00000040466.17	ENSMUST00000108358.8	951	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	187.642094306037	1286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGTGATTATTTTGGT	NA	False	NA	60	True	NA	NA	NA	27147456	27165423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27147622_27158680_27159059_27161991_27162121_27165144
ENSMUST00000108365.4	chr3	-	559	4	FSM	ENSMUSG00000078784.9	ENSMUST00000108365.4	559	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	2488.45909483493	4160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676281	14671348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_14671469_14672236_14672354_14674600_14674718_14676076
ENSMUST00000108370.9	chr3	+	3359	19	FSM	ENSMUSG00000027550.15	ENSMUST00000108370.9	3359	19	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_18	19.4050394371038	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAGTTTTCTCTCTGAAA	NA	False	NA	NA	False	AATAAA	-27	NA	14598847	14637718	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605175_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14637463
ENSMUST00000108382.2	chr7	-	1756	6	FSM	ENSMUSG00000058709.12	ENSMUST00000108382.2	1756	6	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_5	218.816452763498	759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGGTTTTGACCTGGG	NA	False	NA	NA	False	NA	NA	NA	26865838	26858412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26865740
ENSMUST00000108385.3	chr7	+	1631	9	FSM	ENSMUSG00000078787.10	ENSMUST00000108385.3	1631	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.78107443266087	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAACTTTTATTTCTTGG	NA	False	NA	NA	False	AATACA	-18	NA	26854506	26858093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_26854729_26855057_26855221_26855581_26855732_26855940_26856102_26856642_26856820_26856895_26857038_26857138_26857327_26857576_26857719_26857807
ENSMUST00000108386.8	chr4	+	524	5	FSM	ENSMUSG00000042198.13	ENSMUST00000108386.8	524	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	133.401649165218	1918	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGTTTTGGGGTTTTT	NA	False	NA	25	True	ATTAAA	-18	NA	3938887	3943523	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_3938963_3939378_3939527_3941245_3941312_3942720_3942820_3943387
ENSMUST00000108429.8	chr7	+	633	6	FSM	ENSMUSG00000040952.17	ENSMUST00000108429.8	633	6	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	10447.7852504729	370736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584138	24589231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_24584295_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
ENSMUST00000108430.10	chr7	+	774	6	FSM	ENSMUSG00000040952.17	ENSMUST00000108430.10	774	6	0	0	0	0	multi-exon	FALSE	canonical	3	8873	junction_5	7497.54368843557	584055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24583795	24589231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
ENSMUST00000108450.5	chr7	-	1955	6	FSM	ENSMUSG00000062300.15	ENSMUST00000108450.5	1955	6	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_1	167.41517255016	5058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGGGTGTTTTGTAATC	NA	False	NA	-4	True	AATAAA	-16	NA	19483458	19458085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19458795_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
ENSMUST00000108451.4	chr7	-	532	3	FSM	ENSMUSG00000040564.15	ENSMUST00000108451.4	532	3	0	0	0	0	multi-exon	FALSE	canonical	3	1274	junction_1	0.5	3840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGAAGTGCTTTGG	NA	False	NA	-4	True	AATAAA	-19	NA	19426563	19423405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19423562_19425812_19425961_19426335
ENSMUST00000108453.2	chr7	+	1530	3	FSM	ENSMUSG00000011267.9	ENSMUST00000108453.2	1530	3	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_1	5.5	575	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGACTTTCTTGGGGT	727	False	NA	26	True	AATAAA	-21	NA	19311211	19314581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_19311554_19311741_19311886_19313537
ENSMUST00000108455.8	chr7	+	651	6	FSM	ENSMUSG00000002043.18	ENSMUST00000108455.8	651	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	201.035917188944	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACCTGTGCAGTGCTTAT	521	False	NA	17	True	AGTAAA	-18	NA	19242650	19250066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_19242758_19248125_19248194_19248346_19248465_19248931_19249016_19249128_19249223_19249886
ENSMUST00000108458.10	chr7	-	1823	13	FSM	ENSMUSG00000040714.15	ENSMUST00000108458.10	1823	13	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_12	5.99247212944893	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGCGATCTGCTCAATT	2149	False	NA	NA	False	NA	NA	NA	19138029	19128361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19128647_19128809_19128874_19128985_19129093_19129163_19129205_19129289_19129381_19129724_19129899_19130206_19130309_19130431_19130520_19130796_19131017_19131325_19131396_19131886_19132118_19133208_19133475_19137945
ENSMUST00000108459.9	chr7	-	1849	13	FSM	ENSMUSG00000040714.15	ENSMUST00000108459.9	1849	13	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_12	5.52959210872636	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTGCGATCTGCTCA	6332	False	NA	NA	False	NA	NA	NA	19133846	19128364	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19128647_19128809_19128874_19128985_19129093_19129163_19129205_19129289_19129381_19129724_19129899_19130206_19130309_19130431_19130520_19130796_19131017_19131325_19131396_19131886_19132118_19133208_19133475_19133733
ENSMUST00000108468.5	chr7	+	1076	7	FSM	ENSMUSG00000030401.17	ENSMUST00000108468.5	1076	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	28.3279406632784	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTCTGTGTTTTAAAG	580	False	NA	12	True	AATAAA	-20	NA	19024993	19030085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_19025102_19027000_19027209_19027527_19027667_19027772_19027843_19028343_19028391_19029375_19029435_19029640
ENSMUST00000108496.9	chr7	+	2764	9	FSM	ENSMUSG00000001918.18	ENSMUST00000108496.9	2764	9	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_5	112.684293492927	497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16515264	16532199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
ENSMUST00000108503.9	chr11	-	1397	8	FSM	ENSMUSG00000020799.17	ENSMUST00000108503.9	1397	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	18.5681315754731	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72252699	72235547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72248310_72248477_72250504_72250712_72252618
ENSMUST00000108513.5	chr7	-	1344	3	FSM	ENSMUSG00000041583.9	ENSMUST00000108513.5	1344	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	9.5	434	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCCAGTTTTTACCCCC	NA	False	NA	20	True	AATAAA	-36	NA	15573603	15567165	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_15567876_15568304_15568891_15573555
ENSMUST00000108530.2	chr11	-	2389	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108530.2	2389	17	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_6	121.230008016786	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGAATAAATTTTTATTC	NA	False	NA	-29	True	AATAAA	-19	NA	70860780	70833927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
ENSMUST00000108531.8	chr11	-	2453	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108531.8	2453	17	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_6	132.716744893024	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGCTTTACAATTAAAGT	NA	False	NA	1	True	AATAAA	-31	NA	70860799	70833897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
ENSMUST00000108539.8	chr7	+	794	6	FSM	ENSMUSG00000012848.16	ENSMUST00000108539.8	794	6	0	0	0	0	multi-exon	FALSE	canonical	3	946	junction_1	6466.78878578851	193749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTCCTGTGTGCTTGTCT	NA	False	NA	37	True	AATAAA	-23	NA	12656216	12660612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_12656350_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
ENSMUST00000108542.8	chr11	-	1080	7	FSM	ENSMUSG00000057054.12	ENSMUST00000108542.8	1080	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	4.07226390762354	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCGAGGTAGTGATGG	NA	False	NA	NA	False	ATTAAA	-21	NA	70590981	70579186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70579576_70579810_70579971_70580571_70580766_70581008_70581049_70581264_70581379_70586689_70586775_70590883
ENSMUST00000108548.8	chr11	+	1564	12	FSM	ENSMUSG00000060600.16	ENSMUST00000108548.8	1564	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	19.1466718079752	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGTGTTCCTTAGGA	7115	False	NA	13	True	AATAAA	-16	NA	70548029	70553339	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70548094_70548585_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
ENSMUST00000108549.2	chr11	-	608	2	FSM	ENSMUSG00000018293.5	ENSMUST00000108549.2	608	2	0	0	0	0	multi-exon	FALSE	canonical	3	9692	junction_1	0	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTACCTCTTAAGTCCCTT	NA	False	NA	NA	False	ACTAAA	-6	NA	70545424	70543447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70543806_70545174
ENSMUST00000108566.8	chr7	+	1648	5	FSM	ENSMUSG00000044876.16	ENSMUST00000108566.8	1648	5	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	66.2740522376593	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGACTCTCCGGTGTTG	2967	False	NA	15	True	AATAAA	-24	NA	6175511	6193420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_6175574_6176980_6177101_6186860_6187202_6191132_6191242_6192404
ENSMUST00000108575.9	chr11	-	643	4	FSM	ENSMUSG00000020831.19	ENSMUST00000108575.9	643	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	223.35671519393	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128679	70126031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70126295_70126822_70127038_70128356_70128452_70128609
ENSMUST00000108578.9	chr11	-	880	6	FSM	ENSMUSG00000020831.19	ENSMUST00000108578.9	880	6	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	133.830340356737	3953	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70126291_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609
ENSMUST00000108579.8	chr11	-	667	4	FSM	ENSMUSG00000020831.19	ENSMUST00000108579.8	667	4	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_2	177.768263634304	1103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128730	70126031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70126295_70126849_70127038_70128356_70128452_70128609
ENSMUST00000108583.9	chr7	+	2177	9	FSM	ENSMUSG00000059851.16	ENSMUST00000108583.9	2177	9	0	0	0	0	multi-exon	FALSE	canonical	3	456	junction_1	88.3026578025826	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	653	False	NA	16	True	ATTAAA	-17	NA	4743183	4750513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
ENSMUST00000108587.9	chr7	-	1059	14	FSM	ENSMUSG00000064179.14	ENSMUST00000108587.9	1059	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	20.2312079507856	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTGGGAGTACAACTTG	9152	False	NA	82	True	ATTAAA	-15	NA	4519003	4507568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950_4513068_4513315_4513380_4515263_4515286_4516579_4516613_4516809_4516837_4517211_4517226_4517335_4517379_4518929
ENSMUST00000108594.8	chr11	-	1454	9	FSM	ENSMUSG00000018565.18	ENSMUST00000108594.8	1454	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	188.652085530481	3668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTGGTAATGCTTAAACA	8900	False	NA	0	True	AATAAA	-30	NA	69872078	69859049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824_69870886_69871039_69871389_69872032
ENSMUST00000108607.8	chr11	-	852	7	FSM	ENSMUSG00000078812.11	ENSMUST00000108607.8	852	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	9783.67234080446	910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGAGTTGGGTACTGCTTG	6467	False	NA	NA	False	NA	NA	NA	69812016	69807922	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811249_69811988
ENSMUST00000108610.8	chr11	-	1409	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108610.8	1409	6	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_5	8144.23656336185	4143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	7027	False	NA	-15	True	AATAAA	-20	NA	69811456	69807545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166
ENSMUST00000108611.8	chr11	-	1353	7	FSM	ENSMUSG00000078812.11	ENSMUST00000108611.8	1353	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	9790.70116658319	4484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6717	False	NA	-15	True	AATAAA	-20	NA	69811766	69807545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811626
ENSMUST00000108612.8	chr11	-	1259	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108612.8	1259	6	0	0	0	0	multi-exon	FALSE	canonical	3	1359	junction_5	7943.03597876782	3626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6717	False	NA	-15	True	AATAAA	-20	NA	69811766	69807545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811626
ENSMUST00000108613.10	chr11	-	1343	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	0	0	0	0	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	50410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9941	False	NA	-15	True	AATAAA	-20	NA	69812212	69807545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
ENSMUST00000108623.8	chr7	+	1347	5	FSM	ENSMUSG00000006333.15	ENSMUST00000108623.8	1347	5	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_4	5925.24712564801	28861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTATTGGTGTGCCTCTG	1309	False	NA	1	True	AATAAA	-16	NA	3707036	3709894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709006
ENSMUST00000108624.8	chr7	+	478	3	FSM	ENSMUSG00000006333.15	ENSMUST00000108624.8	478	3	0	0	0	0	multi-exon	FALSE	canonical	1	174	junction_2	7056	4837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAGAATTGATACTTG	1591	False	NA	-18	True	NA	NA	NA	3707318	3709875	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3707448_3707644_3707768_3709649
ENSMUST00000108625.8	chr7	+	914	4	FSM	ENSMUSG00000006333.15	ENSMUST00000108625.8	914	4	0	0	0	0	multi-exon	FALSE	canonical	3	14286	junction_1	337.374503416538	61841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTTTTCCAGCTGAAAAAT	1323	False	NA	-37	True	NA	NA	NA	3707050	3709856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3707448_3707644_3707768_3708731_3708919_3709649
ENSMUST00000108626.8	chr11	-	1798	8	FSM	ENSMUSG00000001583.14	ENSMUST00000108626.8	1798	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	4.4629998148038	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAGAAAGAAAAGAGG	9080	False	NA	NA	False	NA	NA	NA	69749556	69745305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69746058_69746345_69746630_69746736_69746893_69747203_69747396_69747518_69747590_69747737_69747952_69749230_69749336_69749532
ENSMUST00000108627.4	chr7	+	1319	4	FSM	ENSMUSG00000035585.17	ENSMUST00000108627.4	1319	4	0	0	0	0	multi-exon	FALSE	canonical	3	1035	junction_3	83.107694522763	1289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTGTATTTTGA	2933	False	NA	-2	True	AATAAA	-8	NA	3697521	3704003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3697844_3697976_3698227_3698350_3698621_3703526
ENSMUST00000108636.2	chr7	+	1798	13	FSM	ENSMUSG00000008373.17	ENSMUST00000108636.2	1798	13	0	0	0	0	multi-exon	FALSE	canonical	2	54	junction_8	240.724759262985	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGGTGTGAGTGATTAT	3505	False	NA	14	True	ATTAAA	-22	NA	3633555	3644228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641647_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
ENSMUST00000108641.10	chr7	-	1166	6	FSM	ENSMUSG00000006335.17	ENSMUST00000108641.10	1166	6	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	47.3142684610044	1875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTCTAGGTCACCGTT	NA	False	NA	-1	True	AATAAA	-16	NA	3632928	3623322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_3623474_3623745_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
ENSMUST00000108644.8	chr7	+	351	4	FSM	ENSMUSG00000035674.14	ENSMUST00000108644.8	351	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	1435.61655357163	1539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCTCCAATAAAAATGTGAA	268	False	NA	-13	True	NA	NA	NA	3620384	3623127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3620407_3620615_3620691_3622428_3622507_3622951
ENSMUST00000108656.9	chr11	+	968	6	FSM	ENSMUSG00000069835.11	ENSMUST00000108656.9	968	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	1.72046505340853	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGCAGCCATTTTGAAG	NA	False	NA	NA	False	AATAAA	-34	NA	69512849	69514696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69513159_69513318_69513371_69513532_69513617_69513685_69513788_69513937_69513979_69514316
ENSMUST00000108657.4	chr11	+	1822	11	FSM	ENSMUSG00000059552.14	ENSMUST00000108657.4	1822	11	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_10	535.886405873484	2935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	16	True	AATAAA	-17	NA	69471230	69482699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
ENSMUST00000108675.2	chr11	+	1497	3	FSM	ENSMUSG00000020903.14	ENSMUST00000108675.2	1497	3	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_1	29.5	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAATGGGGGCCTTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	67857305	67865417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_67857344_67860597_67860698_67864058
ENSMUST00000108713.8	chr11	-	4207	9	FSM	ENSMUSG00000001036.18	ENSMUST00000108713.8	4207	9	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_6	30.1330383466387	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	False	NA	0	True	TATAAA	-25	NA	61470511	61408074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61436975_61437738_61470392
ENSMUST00000108721.9	chr11	-	1813	8	FSM	ENSMUSG00000042709.16	ENSMUST00000108721.9	1813	8	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_1	36.2902134443535	709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGGTCTAAGCAGTT	NA	False	NA	0	True	NA	NA	NA	60307877	60291451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60307576
ENSMUST00000108769.8	chr2	-	1460	5	FSM	ENSMUSG00000002458.14	ENSMUST00000108769.8	1460	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_4	23.2849200127464	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAAGCTGTTGTTATGGT	NA	False	NA	-3	True	AGTAAA	-10	NA	181335723	181330299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335671
ENSMUST00000108784.4	chr11	+	729	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108784.4	729	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	265.902655538117	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093363	59096714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_59093546_59094997_59095082_59095360_59095584_59096474
ENSMUST00000108785.2	chr11	+	792	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108785.2	792	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	266.007936389541	4142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGACTTTTGGGGTTGACT	NA	False	NA	12	True	ATTAAA	-26	NA	59093330	59096828	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_59093486_59095000_59095082_59095381_59095584_59096474
ENSMUST00000108786.8	chr11	+	757	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108786.8	757	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	266.424473350329	2050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAACTCATCATTTCTGAG	NA	False	NA	48	True	NA	NA	NA	59093311	59096753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_59093486_59095000_59095082_59095360_59095584_59096474
ENSMUST00000108787.9	chr11	+	718	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108787.9	718	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	235.799820940465	2051	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093314	59096714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_59093486_59094997_59095082_59095360_59095584_59096474
ENSMUST00000108799.10	chr2	+	985	9	FSM	ENSMUSG00000000827.19	ENSMUST00000108799.10	985	9	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_5	401.298965080898	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGTGCCATCCTTTCAA	NA	False	NA	36	True	CATAAA	-33	NA	181139023	181157180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181152296_181152324_181153366_181153409_181154831_181154881_181156872
ENSMUST00000108807.9	chr2	+	2072	6	FSM	ENSMUSG00000027582.17	ENSMUST00000108807.9	2072	6	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_3	10.1074230147946	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTCTCTCAGTGGAGAC	NA	False	NA	5	True	ATTAAA	-12	NA	181007197	181022575	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167
ENSMUST00000108813.10	chr15	-	3661	5	FSM	ENSMUSG00000009575.15	ENSMUST00000108813.10	3661	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	189.635176061827	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGAGGGCATTGAATCT	NA	False	NA	NA	False	NA	NA	NA	103123779	103105113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103123694
ENSMUST00000108838.5	chr15	+	2571	13	FSM	ENSMUSG00000056851.15	ENSMUST00000108838.5	2571	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	188.317753780383	3844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAAGGAATAAGAGTGTCT	2255	False	NA	NA	False	NA	NA	NA	102379219	102408494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102379239_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
ENSMUST00000108840.4	chr8	+	2582	18	FSM	ENSMUSG00000001472.18	ENSMUST00000108840.4	2582	18	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_17	99.4416940675849	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACATGGTGATAT	NA	False	NA	8	True	AAGAAA	-13	NA	124100561	124130545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129885
ENSMUST00000108841.2	chr2	+	689	5	FSM	ENSMUSG00000016344.15	ENSMUST00000108841.2	689	5	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	248.035279748668	1855	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3425	False	NA	1	True	AATAAA	-17	NA	180829128	180830297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_180829248_180829457_180829530_180829601_180829680_180829796_180829894_180829974
ENSMUST00000108850.2	chr11	-	1765	14	FSM	ENSMUSG00000020523.15	ENSMUST00000108850.2	1765	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_12	166.027587356179	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	57409429	57374617	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404899_57405115_57409398
ENSMUST00000108857.2	chr11	-	541	4	FSM	ENSMUSG00000018585.10	ENSMUST00000108857.2	541	4	0	0	0	0	multi-exon	FALSE	canonical	3	2715	junction_3	136.123310110927	28908	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGTCTGGTGTATGTT	NA	False	NA	-7	True	AATAAA	-20	NA	55352065	55337466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_55337611_55341282_55341452_55345706_55345783_55351913
ENSMUST00000108858.8	chr11	-	2115	10	FSM	ENSMUSG00000018593.14	ENSMUST00000108858.8	2115	10	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_8	195.999685058956	2245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGTCCCGGGTGATGG	3858	False	NA	-2	True	AATAAA	-22	NA	55310724	55285325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298103_55300753_55300824_55310613
ENSMUST00000108875.2	chr2	+	1178	7	FSM	ENSMUSG00000038840.8	ENSMUST00000108875.2	1178	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	4.30761599444003	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTCAGCTAGGCTCTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	180570815	180575803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_180571307_180572597_180572698_180573051_180573131_180573211_180573258_180574711_180574784_180574929_180575129_180575612
ENSMUST00000108883.10	chr11	-	2489	26	FSM	ENSMUSG00000018340.14	ENSMUST00000108883.10	2489	26	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_6	73.4786608478952	1994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	-4	True	NA	NA	NA	54924271	54869933	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
ENSMUST00000108886.8	chr11	-	2642	17	FSM	ENSMUSG00000020400.18	ENSMUST00000108886.8	2642	17	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_16	76.2520491527933	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	6841	False	NA	-5	True	CATAAA	-18	NA	54853742	54801612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54853658
ENSMUST00000108889.10	chr11	-	2834	18	FSM	ENSMUSG00000020400.18	ENSMUST00000108889.10	2834	18	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	53.1161161918674	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGACTGGCTAATTCT	3582	False	NA	-3	True	CATAAA	-20	NA	54846948	54801610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
ENSMUST00000108895.8	chr11	+	1829	13	FSM	ENSMUSG00000037533.21	ENSMUST00000108895.8	1829	13	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	14.7082743152735	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTATGCTCATTATTGT	NA	False	NA	NA	False	AATAAA	-15	NA	54413715	54525835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_54413945_54434404_54434476_54437198_54437256_54443615_54443700_54452150_54452221_54459178_54459323_54501613_54501746_54510711_54510890_54513141_54513279_54516686_54516846_54517410_54517564_54522017_54522183_54525585
ENSMUST00000108901.8	chr2	+	1444	7	FSM	ENSMUSG00000039069.20	ENSMUST00000108901.8	1444	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	63.2077702677623	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179713585	179727695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_179713680_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
ENSMUST00000108920.10	chr11	+	2136	10	FSM	ENSMUSG00000018899.18	ENSMUST00000108920.10	2136	10	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	9.82940913537621	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGTGTGGCTTTTTATTTA	NA	False	NA	10	True	TATAAA	-17	NA	53660840	53668149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_53661105_53662109_53662202_53663664_53663765_53664481_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
ENSMUST00000108923.2	chr2	-	1372	3	FSM	ENSMUSG00000078861.9	ENSMUST00000108923.2	1372	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	29	1143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAATTTTAAAAGAATTCA	NA	False	NA	-14	True	NA	NA	NA	177720269	177710282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_177711409_177711615_177711743_177720150
ENSMUST00000108928.2	chr2	-	767	4	FSM	ENSMUSG00000078862.11	ENSMUST00000108928.2	767	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	8.5764535535124	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTCAGCTGTGTGAATA	NA	False	NA	NA	False	NA	NA	NA	177599032	177589470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_177590024_177590229_177590357_177595474_177595530_177599000
ENSMUST00000108935.8	chr2	+	1451	3	FSM	ENSMUSG00000074521.10	ENSMUST00000108935.8	1451	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	14.5	1461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATAATCAATGCGAGAACA	NA	False	NA	NA	False	NA	NA	NA	177538888	177547577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_177539047_177546077_177546205_177546411
ENSMUST00000108939.9	chr2	-	1576	4	FSM	ENSMUSG00000095362.8	ENSMUST00000108939.9	1576	4	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	217.946476609893	1393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTAAAGCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	177482111	177473583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_177474890_177476043_177476105_177476312_177476440_177482029
ENSMUST00000108943.2	chr2	-	531	4	FSM	ENSMUSG00000078865.9	ENSMUST00000108943.2	531	4	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_3	396.148400925153	1080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTAACAGATATGTTACTG	2337	False	NA	NA	False	NA	NA	NA	177270003	177263019	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_177263288_177263479_177263607_177266761_177266817_177269922
ENSMUST00000108955.2	chr2	-	1415	4	FSM	ENSMUSG00000078867.10	ENSMUST00000108955.2	1415	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	139.800651723167	1173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTCATATAGATAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	177090112	177079877	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_177081015_177081219_177081347_177086489_177086545_177090016
ENSMUST00000108959.3	chr2	-	1581	4	FSM	ENSMUSG00000078868.4	ENSMUST00000108959.3	1581	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	8.04155872120988	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTAAAGCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	177016100	177006312	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_177007703_177008856_177008918_177009124_177009252_177016097
ENSMUST00000108963.2	chr2	-	1050	3	FSM	ENSMUSG00000078869.3	ENSMUST00000108963.2	1050	3	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_1	30.5	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCATCTGATGTTATAAAG	NA	False	NA	NA	False	NA	NA	NA	176958829	176956446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_176957402_176958542_176958604_176958795
ENSMUST00000108964.2	chr2	-	912	4	FSM	ENSMUSG00000078870.10	ENSMUST00000108964.2	912	4	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_3	114.822568435923	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGGGGCATTGAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	176898214	176886641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_176887290_176887494_176887622_176894619_176894675_176898132
ENSMUST00000108975.9	chr2	+	683	5	FSM	ENSMUSG00000078875.11	ENSMUST00000108975.9	683	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	57.6123901604507	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAGAAAAAGTATGTTATA	NA	False	NA	NA	False	NA	NA	NA	176692748	176702777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_176692840_176696293_176696349_176701473_176701601_176701806_176701868_176702428
ENSMUST00000108988.9	chr8	+	3274	14	FSM	ENSMUSG00000031826.21	ENSMUST00000108988.9	3274	14	0	0	0	0	multi-exon	FALSE	canonical	3	740	junction_3	231.479471146212	666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8827	False	NA	39	True	AATAAA	-21	NA	120637552	120684299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
ENSMUST00000109007.8	chr2	+	1621	4	FSM	ENSMUSG00000078886.13	ENSMUST00000109007.8	1621	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	114.545478595476	1537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	175757123	175769428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_175757228_175760682_175760738_175767761_175767889_175768093
ENSMUST00000109011.8	chr2	+	1445	4	FSM	ENSMUSG00000078887.11	ENSMUST00000109011.8	1445	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	81.1432204329001	1302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACATTAGATTGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	175661011	175671449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_175661175_175664841_175664897_175670021_175670149_175670349
ENSMUST00000109021.4	chr11	-	405	3	FSM	ENSMUSG00000044894.15	ENSMUST00000109021.4	405	3	0	0	0	0	multi-exon	FALSE	canonical	3	885	junction_2	2412.5	14729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2947	False	NA	-8	True	AATAAA	-17	NA	53321654	53319779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_53319978_53321362_53321530_53321614
ENSMUST00000109042.10	chr2	+	1271	3	FSM	ENSMUSG00000078896.12	ENSMUST00000109042.10	1271	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	42.5	838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGTTCCCATTTCATT	NA	False	NA	NA	False	NA	NA	NA	175311777	175321130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_175311916_175319791_175319919_175320124
ENSMUST00000109055.2	chr2	-	965	4	FSM	ENSMUSG00000078903.11	ENSMUST00000109055.2	965	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	81.8141525382715	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCACATACCTTTCACT	NA	False	NA	NA	False	NA	NA	NA	175048692	175038734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_175039399_175039599_175039727_175044851_175044907_175048573
ENSMUST00000109069.8	chr2	+	919	4	FSM	ENSMUSG00000078906.10	ENSMUST00000109069.8	919	4	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	395.454450249611	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACATACCTTTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	174852033	174859405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_174852115_174855220_174855276_174858430_174858558_174858749
ENSMUST00000109075.8	chr2	+	2279	15	FSM	ENSMUSG00000016253.13	ENSMUST00000109075.8	2279	15	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_12	51.3083913254758	1125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATTTTACTCATTTCTT	NA	False	NA	40	True	AATAAA	-21	NA	174257596	174269295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
ENSMUST00000109086.8	chr11	-	585	7	FSM	ENSMUSG00000020390.13	ENSMUST00000109086.8	585	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_6	225.904662782039	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATCCTTCATCGTTGTTG	NA	False	NA	NA	False	AATAGA	-12	NA	51891589	51877493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119_51891189_51891503
ENSMUST00000109140.10	chr2	-	1862	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109140.10	1862	9	0	0	0	0	multi-exon	FALSE	canonical	3	1025	junction_8	140.198965759381	6868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGTGGGTAATCATTTGA	NA	False	NA	-2	True	AATATA	-22	NA	172212455	172198109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212392
ENSMUST00000109148.8	chr2	+	736	4	FSM	ENSMUSG00000052033.14	ENSMUST00000109148.8	736	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	387.259029017472	6211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTAGTATCCGACAGAGAT	4127	False	NA	68	True	AAGAAA	-1	NA	170353439	170361043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_170353476_170357658_170357767_170358469_170358611_170360592
ENSMUST00000109161.3	chr2	-	1009	6	FSM	ENSMUSG00000027551.16	ENSMUST00000109161.3	1009	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	185.215982031789	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTACTGTTGTTACCATT	NA	False	NA	-1	True	TATAAA	-19	NA	168797209	168776732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_168776860_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
ENSMUST00000109193.8	chr2	-	1076	9	FSM	ENSMUSG00000078919.11	ENSMUST00000109193.8	1076	9	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	149.583118616373	710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTGCTTTCATTTAGA	NA	False	NA	-19	True	AATAAA	-23	NA	168072511	168052200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072308
ENSMUST00000109203.9	chr13	+	1525	11	FSM	ENSMUSG00000025451.16	ENSMUST00000109203.9	1525	11	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	94.7694043454954	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCTAGCTGGTTAGATG	NA	False	NA	109	True	AATAAA	-36	NA	119565136	119593927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_119565177_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
ENSMUST00000109226.5	chr13	-	1600	2	FSM	ENSMUSG00000042275.10	ENSMUST00000109226.5	1600	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTCTAGTTCGAGTTAC	NA	False	NA	-1	True	AATAAA	-22	NA	115226722	115224890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_115225498_115225729
ENSMUST00000109238.9	chr2	-	2976	12	FSM	ENSMUSG00000039536.17	ENSMUST00000109238.9	2976	12	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_8	58.6274129884562	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGTCTTTTTCCAATT	NA	False	NA	-21	True	AATAAA	-9	NA	166838185	166790066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797051_166801942_166802042_166805348_166805515_166806498_166806638_166837953
ENSMUST00000109256.11	chr15	+	1154	8	FSM	ENSMUSG00000036167.17	ENSMUST00000109256.11	1154	8	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_5	28.6199587843226	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTTAAAGTATCTTAATTA	NA	False	NA	NA	False	AATAAA	-11	NA	93296230	93387189	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
ENSMUST00000109262.8	chr2	-	2515	11	FSM	ENSMUSG00000039671.19	ENSMUST00000109262.8	2515	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	162.152520794467	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGCTCTCTTGTTCCGC	NA	False	NA	-20	True	AATAAA	-22	NA	165738870	165669101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165738772
ENSMUST00000109278.8	chr11	-	1965	8	FSM	ENSMUSG00000041278.11	ENSMUST00000109278.8	1965	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	255.299184231732	3686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGTTTCTGTACAACTTG	NA	False	NA	NA	False	NA	NA	NA	43638835	43620338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_43621435_43627241_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911_43636275_43638748
ENSMUST00000109297.8	chr8	+	1094	6	FSM	ENSMUSG00000060098.12	ENSMUST00000109297.8	1094	6	0	0	0	0	multi-exon	FALSE	canonical	3	1054	junction_4	40.5186376868719	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCATAGAAACTCATGTGC	1906	False	NA	NA	False	NA	NA	NA	106937654	106962021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479
ENSMUST00000109298.8	chr2	-	1991	10	FSM	ENSMUSG00000017664.17	ENSMUST00000109298.8	1991	10	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_9	78.2020175926143	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5774	False	NA	-34	True	AATAAA	-18	NA	165129675	165118473	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125521_165129603
ENSMUST00000109300.9	chr2	-	2008	10	FSM	ENSMUSG00000017664.17	ENSMUST00000109300.9	2008	10	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_9	47.7596864973064	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5660	False	NA	-34	True	AATAAA	-18	NA	165129789	165118473	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125524_165129703
ENSMUST00000109314.9	chr15	-	448	3	FSM	ENSMUSG00000078938.10	ENSMUST00000109314.9	448	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	216	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACCAAAGGACCCCTTTC	NA	False	NA	NA	False	AATAAA	-13	NA	89294466	89274376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_89274643_89281528_89281638_89294393
ENSMUST00000109316.8	chr2	-	2226	15	FSM	ENSMUSG00000017754.14	ENSMUST00000109316.8	2226	15	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_14	23.0625812315366	785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTCTCTAGCTCTG	NA	False	NA	-1	True	NA	NA	NA	164699462	164681437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806
ENSMUST00000109333.8	chr13	-	701	4	FSM	ENSMUSG00000061474.12	ENSMUST00000109333.8	701	4	0	0	0	0	multi-exon	FALSE	canonical	3	1082	junction_3	81.5693297481079	9001	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	False	NA	NA	False	AATAAA	-1	NA	100881167	100872462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037
ENSMUST00000109344.9	chr2	+	429	3	FSM	ENSMUSG00000017723.12	ENSMUST00000109344.9	429	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	240.5	1688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	233	False	NA	26	True	AATAAA	-32	NA	164404618	164410430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_164404725_164407711_164407859_164410254
ENSMUST00000109345.9	chr2	+	558	4	FSM	ENSMUSG00000017723.12	ENSMUST00000109345.9	558	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	240.807438054189	1337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	248	False	NA	26	True	AATAAA	-32	NA	164404633	164410430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_164404725_164405227_164405372_164407711_164407859_164410254
ENSMUST00000109354.10	chr11	+	1157	10	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43714	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGACGCGGGCTCTCCGCA	NA	False	NA	NA	False	NA	NA	NA	33104926	33113077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr11_+_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
ENSMUST00000109384.10	chr2	-	1923	7	FSM	ENSMUSG00000018322.11	ENSMUST00000109384.10	1923	7	0	0	0	0	multi-exon	FALSE	canonical	3	532	junction_3	35.0606617165164	292	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGCTCTGACGCATTT	5881	False	NA	-5	True	ATTAAA	-16	NA	163913089	163895459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912832
ENSMUST00000109392.9	chr8	+	2891	6	FSM	ENSMUSG00000031885.15	ENSMUST00000109392.9	2891	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_5	26.6578318698277	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAGTCATGACTCTT	3761	False	NA	74	True	ATTAAA	-14	NA	105897320	105944613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929211_105942535
ENSMUST00000109431.10	chr13	+	2726	2	FSM	ENSMUSG00000078952.10	ENSMUST00000109431.10	2726	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	21	True	AATAAA	-18	NA	97571477	97633515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_97571601_97630912
ENSMUST00000109432.4	chr15	+	2273	15	FSM	ENSMUSG00000006369.15	ENSMUST00000109432.4	2273	15	0	0	0	0	multi-exon	TRUE	canonical	3	356	junction_14	63.5701845785187	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTTGTACCTTGGTTT	NA	False	NA	35	True	AATAAA	-25	NA	85090205	85136086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_85090414_85106104_85106211_85108450_85108587_85111168_85111341_85113760_85113818_85114999_85115102_85115617_85115756_85116739_85116878_85121808_85121953_85122663_85122793_85123494_85123621_85124820_85124941_85126211_85126344_85128383_85128508_85135645
ENSMUST00000109509.8	chr11	+	1187	14	FSM	ENSMUSG00000004018.10	ENSMUST00000109509.8	1187	14	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_10	68.2542237026723	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCAATTTATTTGATG	NA	False	NA	3	True	AATAAA	-10	NA	26337201	26421421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418815_26418883_26419651_26419769_26420876_26420949_26421324
ENSMUST00000109521.4	chr8	+	1580	9	FSM	ENSMUSG00000031783.11	ENSMUST00000109521.4	1580	9	0	0	0	0	multi-exon	FALSE	canonical	3	1933	junction_5	86.4056566435323	13802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTGCTTTAATTGCATT	NA	False	NA	NA	False	AATAAA	-17	NA	95584077	95590870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589318_95589437_95589513_95590079
ENSMUST00000109525.8	chr11	+	3177	18	FSM	ENSMUSG00000020280.13	ENSMUST00000109525.8	3177	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	32.02183511099	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGCATTGTTTTTTTTT	NA	False	NA	10	True	ATTAAA	-17	NA	23615673	23682876	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_23615749_23617287_23617415_23622507_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678974_23679075_23681320
ENSMUST00000109528.9	chr2	-	2056	2	FSM	ENSMUSG00000067787.11	ENSMUST00000109528.9	2056	2	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	0	324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGGTTTTATGTGGCT	NA	False	NA	-12	True	AATAAA	-16	NA	157408257	157398281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_157400248_157408167
ENSMUST00000109566.9	chr2	+	1595	7	FSM	ENSMUSG00000061689.16	ENSMUST00000109566.9	1595	7	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_1	73.2575365861197	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTAGAACCTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	156562964	156605044	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_156563008_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
ENSMUST00000109570.8	chr2	+	2766	5	FSM	ENSMUSG00000027628.11	ENSMUST00000109570.8	2766	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	64.1190299365173	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCCCCTGTGTGAGTCTC	NA	False	NA	7	True	ATTAAA	-18	NA	156389503	156410076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_156389804_156391804_156391948_156392568_156393370_156397746_156397977_156408784
ENSMUST00000109587.9	chr2	-	2810	17	FSM	ENSMUSG00000027620.17	ENSMUST00000109587.9	2810	17	0	0	0	0	multi-exon	FALSE	canonical	3	1358	junction_5	409.933526432945	8098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	156022158	155989158	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
ENSMUST00000109596.8	chr11	-	2171	4	FSM	ENSMUSG00000044066.15	ENSMUST00000109596.8	2171	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	18.3726850393609	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTAGCTCAGTTGACT	3055	False	NA	-8	True	AATAAA	-17	NA	20199418	20188385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_20188589_20189195_20190699_20191885_20192239_20199306
ENSMUST00000109597.10	chr2	+	550	2	FSM	ENSMUSG00000067847.14	ENSMUST00000109597.10	550	2	0	0	0	0	multi-exon	FALSE	canonical	3	985	junction_1	0	1942	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAGTCTATTTTTACCTA	6545	False	NA	14	True	AATAAA	-19	NA	155986152	155987714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_155986510_155987521
ENSMUST00000109598.4	chr2	+	362	3	FSM	ENSMUSG00000067847.14	ENSMUST00000109598.4	362	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	492.5	4631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTCGTTATATCAGTCT	6549	False	NA	3	True	AATAAA	-8	NA	155986156	155987703	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_155986206_155986378_155986510_155987521
ENSMUST00000109600.2	chr2	-	709	3	FSM	ENSMUSG00000027618.18	ENSMUST00000109600.2	709	3	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_2	22	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCGCGGGTCAATGGGAC	3112	False	NA	0	True	TTTAAA	-6	NA	155986100	155983706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155984163_155985286_155985379_155985939
ENSMUST00000109602.8	chr11	+	2626	4	FSM	ENSMUSG00000020149.18	ENSMUST00000109602.8	2626	4	0	0	0	0	multi-exon	FALSE	canonical	1	20	junction_2	873.996313239109	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATAGATGCGCTTGTTGG	NA	False	NA	NA	False	AATAAA	-18	NA	20151434	20176850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_20151653_20165629_20165703_20174366_20174499_20174647
ENSMUST00000109605.5	chr15	+	1725	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	0	0	0	0	multi-exon	FALSE	canonical	3	1292	junction_2	43	10368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4145	False	NA	32	True	AATAAA	-20	NA	80139384	80141742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_80139887_80140407_80140723_80140834
ENSMUST00000109609.9	chr8	-	1171	10	FSM	ENSMUSG00000031667.17	ENSMUST00000109609.9	1171	10	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_9	96.0081015100057	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTGGCTATCAGTGTTG	NA	False	NA	-9	True	AGTAAA	-12	NA	91860651	91851096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857777_91860527
ENSMUST00000109625.8	chr15	-	3056	5	FSM	ENSMUSG00000089715.13	ENSMUST00000109625.8	3056	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	62.5114989421946	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79718438	79710341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_79713126_79717712_79717780_79717902_79717969_79718115_79718160_79718343
ENSMUST00000109636.11	chr2	-	2633	10	FSM	ENSMUSG00000005882.19	ENSMUST00000109636.11	2633	10	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_1	57.3294572333165	1911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAAACTTTACTGTGTG	NA	False	NA	-58	True	NA	NA	NA	155772230	155688840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554_155763648_155771932
ENSMUST00000109638.2	chr2	-	1382	2	FSM	ENSMUSG00000027613.16	ENSMUST00000109638.2	1382	2	0	0	0	0	multi-exon	FALSE	canonical	3	1052	junction_1	0	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTCCTTATGAAATG	NA	False	NA	NA	False	AATAAA	-16	NA	155668583	155667085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155668131_155668246
ENSMUST00000109641.2	chr11	-	450	4	FSM	ENSMUSG00000078974.11	ENSMUST00000109641.2	450	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	2930.40759394775	2496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCCATAACAGACATTTAT	NA	False	NA	-51	True	AATAAA	-6	NA	16458069	16451650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16457979
ENSMUST00000109664.2	chr11	-	2807	3	FSM	ENSMUSG00000035455.13	ENSMUST00000109664.2	2807	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	194	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGCAAGATGTAATCTT	NA	False	NA	NA	False	AATAAA	-11	NA	11758932	11750551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_11753064_11755958_11756216_11758894
ENSMUST00000109682.9	chr2	+	684	4	FSM	ENSMUSG00000047459.15	ENSMUST00000109682.9	684	4	0	0	0	0	multi-exon	FALSE	canonical	3	1428	junction_1	142.385236438177	13447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGTGTCTTTACTAGA	NA	False	NA	19	True	AGTAAA	-21	NA	155078454	155092197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_155078538_155084650_155084727_155089690_155089859_155091840
ENSMUST00000109687.9	chr15	+	2570	14	FSM	ENSMUSG00000033088.20	ENSMUST00000109687.9	2570	14	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_8	26.3687999246734	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCTCTGTGGATGCTG	NA	False	NA	9	True	AATAAA	-13	NA	78867240	78890064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_78867409_78872091_78872149_78875016_78875086_78875184_78875275_78875528_78875639_78877103_78877633_78878241_78878353_78883996_78884145_78885720_78885824_78886247_78886408_78886484_78886599_78887905_78887993_78888644_78888806_78889401
ENSMUST00000109699.11	chr13	+	2834	19	FSM	ENSMUSG00000021595.19	ENSMUST00000109699.11	2834	19	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_7	132.889457914055	924	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTGGCATGAGACTTGGA	NA	False	NA	31	True	AATAAA	-19	NA	69760134	69782453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_69760308_69760419_69760578_69761056_69761162_69763530_69763637_69765524_69765597_69766224_69766310_69767564_69767758_69769723_69769799_69771281_69771413_69774596_69774671_69775154_69775286_69775678_69775776_69777653_69777836_69778120_69778214_69778746_69778883_69779353_69779435_69779650_69779790_69781346_69781387_69781690
ENSMUST00000109703.3	chr2	-	560	3	FSM	ENSMUSG00000000876.12	ENSMUST00000109703.3	560	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	94.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCAAGTTTTCTGTTTTG	NA	False	NA	NA	False	AATAAA	-30	NA	154445608	154437165	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_154437491_154438121_154438185_154445436
ENSMUST00000109721.3	chr11	+	1551	9	FSM	ENSMUSG00000000378.16	ENSMUST00000109721.3	1551	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	143.316738380414	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTCCAGTTGTCAAGCAT	NA	False	NA	13	True	AAAACA	-25	NA	6511229	6546742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_6511242_6534519_6534604_6535033_6535218_6539431_6539569_6540752_6540889_6543066_6543125_6543601_6543741_6544147_6544287_6546080
ENSMUST00000109731.8	chr2	-	2160	15	FSM	ENSMUSG00000027487.12	ENSMUST00000109731.8	2160	15	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_14	23.0212856251934	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTGTCTACTTTTTTCA	5389	False	NA	-9	True	AATAAA	-18	NA	154214930	154177299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214600_154214775_154214881
ENSMUST00000109734.8	chr8	+	1612	6	FSM	ENSMUSG00000005161.16	ENSMUST00000109734.8	1612	6	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_1	1434.62463383284	26920	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTCTAGGCTCTGACCC	NA	False	NA	NA	False	AATAAA	-37	NA	85696215	85701463	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85696392_85696780_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
ENSMUST00000109737.9	chr11	-	1633	5	FSM	ENSMUSG00000041126.17	ENSMUST00000109737.9	1633	5	0	0	0	0	multi-exon	FALSE	canonical	3	3133	junction_4	74.0485482639599	14068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTCCTGGTCCTGA	NA	False	NA	-5	True	AATAAA	-24	NA	6394443	6377228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6378433_6379095_6379226_6383723_6383838_6389375_6389454_6394336
ENSMUST00000109738.10	chr8	-	2044	8	FSM	ENSMUSG00000052926.17	ENSMUST00000109738.10	2044	8	0	0	0	0	multi-exon	FALSE	canonical	3	1021	junction_5	82.5459674041917	2145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACTATGTTATCTATTT	8283	False	NA	-7	True	NA	NA	NA	85692640	85683238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
ENSMUST00000109744.8	chr8	+	1958	6	FSM	ENSMUSG00000003812.14	ENSMUST00000109744.8	1958	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	35.6796860972739	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGTAACCTTTTTCTTAA	NA	False	NA	9	True	AATACA	-19	NA	85635188	85638337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85635504_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314
ENSMUST00000109754.2	chr8	+	1795	13	FSM	ENSMUSG00000003808.19	ENSMUST00000109754.2	1795	13	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_9	182.281585435526	1408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTGTCATTCATTTCA	NA	False	NA	38	True	AATAAA	-38	NA	85583645	85595886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594381_85594548_85594637_85594716_85594852_85594968_85595494
ENSMUST00000109761.9	chr8	-	1842	9	FSM	ENSMUSG00000003813.16	ENSMUST00000109761.9	1842	9	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_3	246.139156525328	2030	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGCTTCTCACAGCTGT	NA	False	NA	-14	True	AATAAA	-37	NA	85567294	85561539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_85562304_85562383_85562549_85564088_85564223_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
ENSMUST00000109767.9	chr8	+	2138	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109767.9	2138	17	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	116.091541869983	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCATTTTGAATTGG	NA	False	NA	15	True	AATAAA	-15	NA	85415875	85426416	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85415979_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUST00000109768.9	chr8	+	2044	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109768.9	2044	17	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	132.785409001705	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415892	85426415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85415979_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
ENSMUST00000109782.2	chr2	-	1343	10	FSM	ENSMUSG00000056941.18	ENSMUST00000109782.2	1343	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	72.7254264636584	1063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAGCTCTGAATCCA	NA	False	NA	-19	True	ATTAAA	-17	NA	153474660	153460753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474107_153474183_153474513
ENSMUST00000109802.3	chr8	-	2867	19	FSM	ENSMUSG00000002885.15	ENSMUST00000109802.3	2867	19	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_15	26.9886235749276	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCACGTTTGCTGGTGA	NA	False	NA	-11	True	ATTAAA	-19	NA	84467802	84449992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84460042_84460196_84460637_84460755_84460924_84460982_84467735
ENSMUST00000109820.5	chr2	-	2568	3	FSM	ENSMUSG00000007659.19	ENSMUST00000109820.5	2568	3	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	91.5	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACCACAGCCTTGGCTCT	NA	False	NA	-9	True	AATAAA	-18	NA	152672586	152622591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_152624203_152671346_152672023_152672305
ENSMUST00000109831.3	chr8	+	2293	15	FSM	ENSMUSG00000002190.14	ENSMUST00000109831.3	2293	15	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_5	6.81834260787527	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGAGAGCCAAGAGATTCG	NA	False	NA	12	True	AATAAA	-18	NA	84116506	84153460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_84116730_84122071_84122222_84123630_84123708_84124277_84124337_84126577_84126720_84134782_84134865_84136114_84136308_84136978_84137169_84146832_84146947_84147047_84147199_84149649_84149866_84150701_84150828_84151199_84151363_84152153_84152255_84153154
ENSMUST00000109845.8	chr11	+	2001	13	FSM	ENSMUSG00000020476.15	ENSMUST00000109845.8	2001	13	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_7	40.5239126936183	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGCTCAGCCCATCCAT	NA	False	NA	-29	True	NA	NA	NA	5738487	5750629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747286_5747336_5747626_5747721_5748015_5748112_5748215_5748326_5749233_5749340_5749859
ENSMUST00000109847.9	chr2	-	2384	12	FSM	ENSMUSG00000027466.16	ENSMUST00000109847.9	2384	12	0	0	0	0	multi-exon	FALSE	canonical	3	444	junction_6	68.3604931579153	648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152174332	152158253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
ENSMUST00000109848.10	chr12	-	2831	10	FSM	ENSMUSG00000021266.17	ENSMUST00000109848.10	2831	10	0	0	0	0	multi-exon	FALSE	canonical	3	1835	junction_9	109.614475929657	1696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	-31	True	AATAAA	-19	NA	108860100	108825955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
ENSMUST00000109861.8	chr2	+	2590	5	FSM	ENSMUSG00000027463.15	ENSMUST00000109861.8	2590	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	23.0976189249022	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATCAAACTACTTAAAC	NA	False	NA	-18	True	NA	NA	NA	151841784	151851142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_151841859_151845971_151846599_151847451_151847940_151849400_151849525_151849865
ENSMUST00000109878.9	chr11	+	1611	8	FSM	ENSMUSG00000034175.14	ENSMUST00000109878.9	1611	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	73.7707424998528	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5050156	5056091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_5050227_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
ENSMUST00000109905.5	chr13	+	1420	5	FSM	ENSMUSG00000058569.9	ENSMUST00000109905.5	1420	5	0	0	0	0	multi-exon	FALSE	canonical	3	616	junction_1	31.3847096529504	5485	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTCGTGGTTACTCTTTT	NA	False	NA	NA	False	NA	NA	NA	55740981	55745510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_55741171_55741313_55741415_55742517_55742644_55743280_55743428_55744653
ENSMUST00000109916.8	chr2	-	2922	4	FSM	ENSMUSG00000068130.12	ENSMUST00000109916.8	2922	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	3.29983164553722	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAACAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	150293406	150249060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_150251710_150252860_150252922_150253130_150253258_150293321
ENSMUST00000109950.5	chr8	+	1024	7	FSM	ENSMUSG00000031622.17	ENSMUST00000109950.5	1024	7	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_5	27.2197844713485	4770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAGTTATGTGCAGCAGT	NA	False	NA	24	True	AATAAA	-21	NA	73449912	73466534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996_73466117_73466357
ENSMUST00000109961.8	chr2	+	1116	3	FSM	ENSMUSG00000036992.11	ENSMUST00000109961.8	1116	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	28	4306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATGTCTAAATCTTGAGA	NA	False	NA	15	True	AATAAA	-19	NA	148514520	148517947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_148514756_148516383_148516519_148517201
ENSMUST00000109966.8	chr15	+	1803	4	FSM	ENSMUSG00000034429.16	ENSMUST00000109966.8	1803	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	7.71722460186015	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAAGCCTGTTCTTCAGCC	NA	False	NA	11	True	AATAAA	-16	NA	75840971	75847598	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_75841254_75844930_75845058_75845390_75845505_75846318
ENSMUST00000109972.9	chr15	-	1624	7	FSM	ENSMUSG00000055762.17	ENSMUST00000109972.9	1624	7	0	0	0	0	multi-exon	FALSE	canonical	3	464	junction_5	1042.33482571048	8559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAACCACCTGCCTCTGC	NA	False	NA	NA	False	NA	NA	NA	75781183	75766648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772980_75773105_75781093
ENSMUST00000109989.10	chr11	-	1949	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109989.10	1949	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_9	32.7813557369218	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882044	3867191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881975
ENSMUST00000109990.8	chr11	-	1914	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109990.8	1914	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	47.7330540029071	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3881960	3867191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881926
ENSMUST00000109991.8	chr11	-	1943	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109991.8	1943	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	47.4250545858319	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882078	3867191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881585_3882012
ENSMUST00000109992.8	chr11	-	1945	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109992.8	1945	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	47.4250545858319	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3881789	3867191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881724
ENSMUST00000109993.9	chr11	-	2027	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109993.9	2027	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_9	35.4989132158461	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882159	3867191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3882012
ENSMUST00000109997.10	chr8	+	2713	4	FSM	ENSMUSG00000052446.18	ENSMUST00000109997.10	2713	4	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_3	51.1468474101777	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	16	True	AATAAA	-18	NA	72704914	72724177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_72705005_72719637_72719765_72719943_72720005_72721742
ENSMUST00000110000.8	chr2	+	1142	6	FSM	ENSMUSG00000002728.15	ENSMUST00000110000.8	1142	6	0	0	0	0	multi-exon	FALSE	canonical	3	961	junction_2	184.608775522725	7116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTAATCATCCCTGTC	NA	False	NA	31	True	TATAAA	-16	NA	145745160	145758345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_145745283_145750510_145750536_145753592_145753684_145754312_145754449_145757453_145757600_145757723
ENSMUST00000110001.4	chr12	-	3063	9	FSM	ENSMUSG00000041645.15	ENSMUST00000110001.4	3063	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	279.990624843047	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCTGAGGGTGTTGCAGT	NA	False	NA	-13	True	ATTAAA	-19	NA	103392039	103374241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103391784
ENSMUST00000110020.8	chr12	-	1835	13	FSM	ENSMUSG00000021190.15	ENSMUST00000110020.8	1835	13	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_3	47.188157648103	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTGGCTTTGTGGTTTG	9960	False	NA	-3	True	AAAACA	-29	NA	102390028	102360342	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_102360872_102361100_102361169_102361902_102362074_102364441_102364643_102366163_102366254_102366396_102366516_102368143_102368211_102368928_102368992_102369685_102369762_102370518_102370605_102372054_102372137_102379723_102379822_102389843
ENSMUST00000110027.2	chr2	+	2359	5	FSM	ENSMUSG00000027424.12	ENSMUST00000110027.2	2359	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	194.922420465169	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTCTTTCAGTGGACC	NA	False	NA	14	True	AATAAA	-16	NA	144112860	144122436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_144113264_144113834_144114405_144118234_144118452_144120913_144121047_144121400
ENSMUST00000110030.10	chr2	-	2512	14	FSM	ENSMUSG00000027423.16	ENSMUST00000110030.10	2512	14	0	0	0	0	multi-exon	FALSE	canonical	3	1124	junction_13	126.932773522376	2215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTTCTGACTGTTTT	NA	False	NA	NA	False	AAGAAA	-16	NA	144112826	144092042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296_144112380_144112620
ENSMUST00000110043.8	chr11	+	3702	5	FSM	ENSMUSG00000020453.18	ENSMUST00000110043.8	3702	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	207.771960331513	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	6006	False	NA	14	True	ATTAAA	-16	NA	3239992	3259083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3256222_3256361_3257647
ENSMUST00000110053.9	chr8	+	1064	9	FSM	ENSMUSG00000002395.15	ENSMUST00000110053.9	1064	9	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	224.605626599157	5837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCACATGTCTTCAGTGC	NA	False	NA	19	True	AATAAA	-20	NA	71819491	71822373	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71819723_71819878_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
ENSMUST00000110054.8	chr8	+	973	9	FSM	ENSMUSG00000002395.15	ENSMUST00000110054.8	973	9	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	224.605626599157	6691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819585	71822376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71819723_71819878_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
ENSMUST00000110071.3	chr8	-	1452	11	FSM	ENSMUSG00000035439.14	ENSMUST00000110071.3	1452	11	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_7	129.467524885587	2026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	696	False	NA	-9	True	NA	NA	NA	71725020	71703768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709196_71709999_71710070_71715695_71715749_71721869_71721929_71724927
ENSMUST00000110079.9	chr2	-	2258	14	FSM	ENSMUSG00000039033.12	ENSMUST00000110079.9	2258	14	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	20.460092487948	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGTGTGACTGCTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	139908725	139675399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_139676368_139699621_139699696_139725691_139725803_139752452_139752564_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
ENSMUST00000110089.9	chr2	-	3178	6	FSM	ENSMUSG00000027274.17	ENSMUST00000110089.9	3178	6	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	119.159389055164	2089	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTATACAATCCTTACTA	NA	False	NA	0	True	AATAAA	-20	NA	136733309	136715699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170_136723560_136727392_136727621_136732962
ENSMUST00000110093.9	chr8	+	1442	5	FSM	ENSMUSG00000031840.15	ENSMUST00000110093.9	1442	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	12.8646803302686	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCACCCTGCCCAGCCTTGC	NA	False	NA	88	True	ATTAAA	-19	NA	71207327	71211323	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71207518_71208502_71208731_71209093_71209213_71209783_71209909_71210543
ENSMUST00000110103.2	chr8	-	1380	3	FSM	ENSMUSG00000038508.8	ENSMUST00000110103.2	1380	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	118	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGCGTCTCAGTGACCTT	654	False	NA	-7	True	AATAAA	-17	NA	71085106	71082043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71082825_71083982_71084275_71084799
ENSMUST00000110143.8	chr8	+	1312	9	FSM	ENSMUSG00000079033.11	ENSMUST00000110143.8	1312	9	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_6	45.467021015237	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	8589	False	NA	5	True	NA	NA	NA	70605427	70620138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619047_70619263_70619349_70619468_70619557_70619715
ENSMUST00000110146.9	chr8	+	1342	9	FSM	ENSMUSG00000079033.11	ENSMUST00000110146.9	1342	9	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_6	49.3303595669036	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	8589	False	NA	5	True	NA	NA	NA	70605427	70620138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619077_70619263_70619349_70619468_70619557_70619715
ENSMUST00000110163.8	chr2	-	1551	4	FSM	ENSMUSG00000027341.11	ENSMUST00000110163.8	1551	4	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_3	223.123782287371	2648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	4908	False	NA	-2	True	TATAAA	-20	NA	132089689	132081411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089515
ENSMUST00000110179.9	chr2	+	1320	6	FSM	ENSMUSG00000027333.19	ENSMUST00000110179.9	1320	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	49.3128786423993	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131363978_131364140_131366662
ENSMUST00000110186.9	chr2	+	2170	8	FSM	ENSMUSG00000027333.19	ENSMUST00000110186.9	2170	8	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	48.183746942177	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131363978_131364140_131366163_131366254_131366662
ENSMUST00000110204.9	chr12	+	4196	7	FSM	ENSMUSG00000021255.18	ENSMUST00000110204.9	4196	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	245.866946854504	2077	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCGTTCATGCGTTGTC	1825	False	NA	16	True	AATAAA	-16	NA	86468417	86568399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_86468739_86516919_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
ENSMUST00000110208.8	chr2	+	1521	3	FSM	ENSMUSG00000068264.12	ENSMUST00000110208.8	1521	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	10	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTCTTTTTGTGCG	NA	False	NA	11	True	ATTAAA	-17	NA	131052359	131055434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_131052602_131053182_131053394_131054366
ENSMUST00000110231.2	chr15	-	1499	10	FSM	ENSMUSG00000022422.14	ENSMUST00000110231.2	1499	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	97.4314573887145	1934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTTATCCCTGACTTC	NA	False	NA	-8	True	AATAAA	-14	NA	54953876	54939497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54946800_54946990_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
ENSMUST00000110251.9	chr13	-	1395	10	FSM	ENSMUSG00000021417.16	ENSMUST00000110251.9	1395	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	51.0630208542878	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCAAGCCTTAAGAAT	NA	False	NA	NA	False	AATAAA	-8	NA	35178115	35161739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177204_35177996
ENSMUST00000110273.9	chr13	-	1325	7	FSM	ENSMUSG00000052180.16	ENSMUST00000110273.9	1325	7	0	0	0	0	multi-exon	FALSE	canonical	3	772	junction_6	71.5830908028488	3913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAGAACCGAGTGTTTT	NA	False	NA	-7	True	AATAAA	-19	NA	34089153	34063798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089090
ENSMUST00000110340.9	chr12	-	668	4	FSM	ENSMUSG00000091803.8	ENSMUST00000110340.9	668	4	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	77.5127229699888	1339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGTTCTCAGTGTTCC	998	False	NA	-46	True	AATAAA	-19	NA	81531884	81405799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81531670
ENSMUST00000110351.8	chr12	+	1498	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110351.8	1498	8	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_7	580.121838012305	21383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992305	80997277	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
ENSMUST00000110354.8	chr12	+	1489	9	FSM	ENSMUSG00000021134.18	ENSMUST00000110354.8	1489	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	756.029885322002	16470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992293	80997277	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_80992355_80992375_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
ENSMUST00000110356.3	chr12	+	1568	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110356.3	1568	8	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_1	476.276244656911	18526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992358	80997277	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
ENSMUST00000110357.2	chr2	-	2296	20	FSM	ENSMUSG00000027378.17	ENSMUST00000110357.2	2296	20	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_11	13.7437973922422	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTGTTATATCTAAATT	2791	False	NA	0	True	AATAAA	-16	NA	127630817	127582655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_127583109_127584991_127585037_127587815_127587890_127589919_127590033_127595892_127595993_127598011_127598089_127599598_127599682_127601495_127601607_127603081_127603157_127605698_127605828_127607943_127608039_127610090_127610179_127611534_127611578_127612178_127612313_127614020_127614123_127615817_127616020_127619188_127619314_127621023_127621085_127621982_127622057_127630705
ENSMUST00000110362.4	chr15	-	2122	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	0	0	0	0	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	2548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCAACTACTTTTCTCT	440	False	NA	-12	True	NA	NA	NA	36794081	36771947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
ENSMUST00000110382.9	chr13	-	963	7	FSM	ENSMUSG00000006715.12	ENSMUST00000110382.9	963	7	0	0	0	0	multi-exon	FALSE	canonical	3	1483	junction_6	81.6382603658086	17317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCGTGGAGAATTAAGTGT	NA	False	NA	-8	True	AATAAA	-26	NA	24945906	24935827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945795
ENSMUST00000110395.11	chr12	-	1942	5	FSM	ENSMUSG00000059436.14	ENSMUST00000110395.11	1942	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	22.1697992773954	2330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGTAGTGTCTTCTTAAC	NA	False	NA	0	True	AATAAA	-20	NA	77008959	76984042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_76985530_76986740_76986865_76999942_77000051_77008036_77008064_77008763
ENSMUST00000110456.3	chr17	+	891	4	FSM	ENSMUSG00000025731.17	ENSMUST00000110456.3	891	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	203.922098415601	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATTGCTTGCTGGGAAT	7158	False	NA	30	True	AATAAA	-31	NA	26094437	26096134	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26094701_26095193_26095254_26095468_26095537_26095634
ENSMUST00000110463.8	chr2	-	3392	13	FSM	ENSMUSG00000027206.14	ENSMUST00000110463.8	3392	13	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_9	189.484534695813	1535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGGTGTGTGCATGTGA	NA	False	NA	-4	True	AATAAA	-22	NA	125701059	125672223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684653_125686729_125686856_125690126_125690205_125691659_125691774_125700855
ENSMUST00000110481.3	chr13	-	728	2	FSM	ENSMUSG00000063894.16	ENSMUST00000110481.3	728	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATGCAGATGAAAATTTT	6598	False	NA	NA	False	AATAAA	-21	NA	21715243	21710592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_21711192_21715114
ENSMUST00000110489.9	chr12	-	1988	19	FSM	ENSMUSG00000021098.15	ENSMUST00000110489.9	1988	19	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_17	10.7714758207975	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGTTGAATTATTTGATT	NA	False	NA	NA	False	ATTAAA	-15	NA	72964534	72927882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_72928199_72931996_72932055_72936481_72936621_72939577_72939754_72941757_72941820_72945260_72945308_72945483_72945570_72949186_72949264_72949989_72950109_72952964_72953057_72954594_72954716_72956544_72956588_72956677_72956866_72959958_72960049_72962129_72962257_72963447_72963505_72963596_72963654_72964281_72964372_72964491
ENSMUST00000110504.2	chr15	-	675	5	FSM	ENSMUSG00000022205.16	ENSMUST00000110504.2	675	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	3499.76144722751	35819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGAGGATTGCTTTGTG	NA	False	NA	13	True	ATTAAA	-32	NA	11997069	11984126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874_11993948_11996956
ENSMUST00000110512.4	chr2	+	751	4	FSM	ENSMUSG00000033213.17	ENSMUST00000110512.4	751	4	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_3	25.0377492776186	2387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGATTTGTGCAAGAGATA	NA	False	NA	23	True	AATAAA	-25	NA	122479834	122483005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_122480054_122480176_122480263_122481135_122481197_122482620
ENSMUST00000110551.4	chr2	+	2352	9	FSM	ENSMUSG00000027227.8	ENSMUST00000110551.4	2352	9	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_3	10.5763592507063	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTATGTGGTTTGTGCCT	NA	False	NA	16	True	AATAAA	-19	NA	122065229	122095821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_122065440_122076962_122076997_122079279_122079445_122083667_122083828_122087322_122087442_122089545_122089612_122090660_122090837_122093668_122093791_122094521
ENSMUST00000110609.8	chr8	-	2300	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110609.8	2300	16	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_15	868.905733283728	3403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGCTTGTATGGTACTTG	NA	False	NA	-22	True	AATAAA	-9	NA	26330485	26306913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330396
ENSMUST00000110610.8	chr8	-	2337	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110610.8	2337	16	0	0	0	0	multi-exon	TRUE	canonical	3	3119	junction_12	186.058007680998	9442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTACTTGGCTTCACTGG	NA	False	NA	-12	True	AATAAA	-19	NA	26337722	26306903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
ENSMUST00000110619.2	chr12	-	1276	1	FSM	ENSMUSG00000049751.7	ENSMUST00000110619.2	1276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	107710	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGCCTTGTGTTTTGATT	NA	False	NA	-5	True	AATAAA	-17	NA	69230787	69229511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_69229500_69230800
ENSMUST00000110620.2	chr12	-	757	2	FSM	ENSMUSG00000049751.7	ENSMUST00000110620.2	757	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	78975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTTTGATTCTCAGTA	NA	False	NA	2	True	AATAAA	-24	NA	69230760	69229504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_69229940_69230438
ENSMUST00000110621.3	chr12	+	1500	4	FSM	ENSMUSG00000034883.10	ENSMUST00000110621.3	1500	4	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	15.6276108929747	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAATGTCTCAGCAGTTA	NA	False	NA	9	True	ATTAAA	-23	NA	69215587	69225783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_69215837_69218635_69218735_69221165_69221888_69225353
ENSMUST00000110690.9	chr15	+	3527	17	FSM	ENSMUSG00000022186.15	ENSMUST00000110690.9	3527	17	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_7	29.8008362927955	650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAATGTGTGTGTCCTCTTA	NA	False	NA	16	True	AATAAA	-20	NA	4055864	4184826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209
ENSMUST00000110707.8	chr5	+	2757	14	FSM	ENSMUSG00000079109.12	ENSMUST00000110707.8	2757	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	36.7243047070059	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCATGTCTGCAGTTAC	NA	False	NA	NA	False	AAAAAG	-17	NA	143846807	143868260	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_143846898_143848743_143848879_143850219_143850307_143850436_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038_143862892_143865759_143865861_143865998_143866169_143867833
ENSMUST00000110711.9	chr2	+	2723	8	FSM	ENSMUSG00000027287.15	ENSMUST00000110711.9	2723	8	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_4	7.72221814385119	1687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGACCAGTAATGCCC	NA	False	NA	10	True	NA	NA	NA	120398151	120431736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
ENSMUST00000110713.10	chr12	-	886	5	FSM	ENSMUSG00000054302.16	ENSMUST00000110713.10	886	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	171.146136386423	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGGAGTGGTTATCAAC	NA	False	NA	-5	True	ATTAAA	-19	NA	54742606	54720250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_54720636_54732644_54732757_54738784_54738881_54739559_54739742_54742495
ENSMUST00000110731.4	chr5	+	1829	5	FSM	ENSMUSG00000079111.4	ENSMUST00000110731.4	1829	5	0	0	0	0	multi-exon	FALSE	canonical	3	606	junction_2	10.3531396204243	2013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTATGGTCTTTTCTAT	NA	False	NA	NA	False	AATAAA	-15	NA	143389592	143407656	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555
ENSMUST00000110801.8	chr2	-	1478	5	FSM	ENSMUSG00000027305.10	ENSMUST00000110801.8	1478	5	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	75.083287088406	2012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493301	119485926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493089
ENSMUST00000110802.8	chr2	-	1308	5	FSM	ENSMUSG00000027305.10	ENSMUST00000110802.8	1308	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_4	88.8453712919249	1455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493302	119485926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493260
ENSMUST00000110813.5	chr8	-	1557	6	FSM	ENSMUSG00000051978.10	ENSMUST00000110813.5	1557	6	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_5	39.1591624016653	1114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATATTTGTGATAAGATT	NA	False	NA	-6	True	AATAAA	-18	NA	14140301	14077560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140240
ENSMUST00000110820.3	chr2	-	790	5	FSM	ENSMUSG00000027317.9	ENSMUST00000110820.3	790	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	21.0297408448131	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACCTTTAGGAACCCAGA	NA	False	NA	NA	False	NA	NA	NA	119060346	119048620	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_119048905_119049106_119049140_119049244_119049329_119058237_119058303_119060022
ENSMUST00000110827.8	chr5	+	744	5	FSM	ENSMUSG00000036639.13	ENSMUST00000110827.8	744	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	84.8071341338687	806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTTGTGGCACCTTTAA	NA	False	NA	53	True	NA	NA	NA	140317708	140323696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_140317742_140318177_140318229_140320209_140320375_140321067_140321214_140323347
ENSMUST00000110878.2	chr5	+	1180	9	FSM	ENSMUSG00000025858.13	ENSMUST00000110878.2	1180	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	399.478546826985	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTGTCTCTGCTTCCTTG	NA	False	NA	NA	False	AATAAA	-31	NA	139239265	139255084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_139239357_139248235_139248315_139248624_139248707_139249233_139249384_139251381_139251521_139252758_139252900_139252981_139253058_139253157_139253231_139254735
ENSMUST00000110883.9	chr5	+	3714	20	FSM	ENSMUSG00000036817.15	ENSMUST00000110883.9	3714	20	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_6	213.143404315789	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	NA	False	NA	-12	True	AATAAA	-21	NA	139186397	139235550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
ENSMUST00000110893.10	chr1	-	1242	10	FSM	ENSMUSG00000026632.18	ENSMUST00000110893.10	1242	10	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	11.4309521329882	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATGATTTGTCTTGGACA	NA	False	NA	12	True	TATAAA	-32	NA	190795129	190778022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_190778518_190781478_190781560_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
ENSMUST00000110897.8	chr5	-	1287	7	FSM	ENSMUSG00000025856.16	ENSMUST00000110897.8	1287	7	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_6	122.688969892706	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAACAAAAAAAACAA	NA	False	NA	NA	False	AAAACA	-43	NA	138981842	138962696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138980463_138980594_138981488
ENSMUST00000110918.3	chr2	+	2735	11	FSM	ENSMUSG00000040282.14	ENSMUST00000110918.3	2735	11	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_9	22.3015694514983	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTACCCTTCTACCTGGA	NA	False	NA	7	True	AATAAA	-17	NA	115412213	115609249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517544_115517651_115607382
ENSMUST00000110934.9	chr5	+	1855	6	FSM	ENSMUSG00000036968.16	ENSMUST00000110934.9	1855	6	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_5	26.1350339582714	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAAGTGTAATACATAATA	5598	False	NA	NA	False	AAAACA	-12	NA	138185746	138192180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_138185983_138188531_138188659_138188754_138188852_138190099_138190223_138190822_138190941_138191026
ENSMUST00000110936.8	chr5	-	2308	15	FSM	ENSMUSG00000036980.14	ENSMUST00000110936.8	2308	15	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_14	183.295568157341	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	9932	False	NA	-4	True	AATAAA	-18	NA	138185713	138176878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185652
ENSMUST00000110942.11	chr12	+	2351	13	FSM	ENSMUSG00000020646.18	ENSMUST00000110942.11	2351	13	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_3	25.3874148611735	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAGGGAAGCTAAGATAA	NA	False	NA	NA	False	NA	NA	NA	24881621	25009873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_24881774_24928189_24928336_24932715_24932794_24974197_24974294_24984565_24984622_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
ENSMUST00000110951.8	chr5	+	1098	10	FSM	ENSMUSG00000019494.15	ENSMUST00000110951.8	1098	10	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	1439.16262518466	17318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCAGCCCTTCCAGTGGC	NA	False	NA	11	True	AATAAA	-12	NA	138159361	138162240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_138159453_138159636_138159760_138159935_138160068_138160398_138160488_138160583_138160647_138160996_138161045_138161391_138161507_138161588_138161682_138161770_138161872_138161997
ENSMUST00000110960.9	chr5	+	2204	4	FSM	ENSMUSG00000037017.16	ENSMUST00000110960.9	2204	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	50.6776303927307	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTATTTTATTGGGT	NA	False	NA	55	True	TATAAA	-6	NA	138115198	138132527	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_138115270_138123239_138123953_138124715_138124909_138131300
ENSMUST00000110961.9	chr5	+	2310	5	FSM	ENSMUSG00000037017.16	ENSMUST00000110961.9	2310	5	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	38.7774096607806	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTATTTTATTGGGT	NA	False	NA	55	True	TATAAA	-6	NA	138115177	138132527	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_138115270_138116097_138116183_138123239_138123953_138124715_138124909_138131300
ENSMUST00000111035.2	chr5	-	988	1	FSM	ENSMUSG00000029715.6	ENSMUST00000111035.2	988	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2298	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCTTCGAATGGCCTCT	1732	False	NA	-32	True	AATAAA	-20	NA	137500687	137499699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_137499700_137500700
ENSMUST00000111059.2	chr1	+	3127	4	FSM	ENSMUSG00000062169.14	ENSMUST00000111059.2	3127	4	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_3	804.702429473156	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATTGTTCTATTGCTTG	NA	False	NA	NA	False	NA	NA	NA	180978495	180996559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180978627_180981299_180981369_180983423_180983537_180993745
ENSMUST00000111080.8	chr5	-	1353	5	FSM	ENSMUSG00000004849.15	ENSMUST00000111080.8	1353	5	0	0	0	0	multi-exon	FALSE	canonical	3	639	junction_4	57.0586321252096	4462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCCTTGGCTTTGTTGG	NA	False	NA	1	True	AATAAA	-25	NA	137074989	137063846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_137064646_137066271_137066410_137070622_137070732_137071917_137072097_137074861
ENSMUST00000111094.8	chr5	+	948	5	FSM	ENSMUSG00000019054.14	ENSMUST00000111094.8	948	5	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	181.92443486239	3511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTGTGTGTGAGCGAG	4051	False	NA	18	True	AATAAA	-19	NA	136982128	136995086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_136982445_136991852_136991986_136993946_136994024_136994418_136994525_136994770
ENSMUST00000111115.8	chr14	-	3259	7	FSM	ENSMUSG00000022051.16	ENSMUST00000111115.8	3259	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	345.4101024708	3956	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTCCATATATCATTTT	NA	False	NA	-12	True	ATTAAA	-16	NA	67246305	67222687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_67225225_67226348_67226391_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
ENSMUST00000111129.2	chr5	+	474	3	FSM	ENSMUSG00000039771.14	ENSMUST00000111129.2	474	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	632.5	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAAATGGGGCTGTGCAG	9283	False	NA	19	True	AATAAA	-8	NA	136145555	136151790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_136145660_136150942_136151118_136151595
ENSMUST00000111131.9	chr2	+	555	5	FSM	ENSMUSG00000068686.13	ENSMUST00000111131.9	555	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	30.2933573576783	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACAATAAAATTTGAGCC	NA	False	NA	NA	False	NA	NA	NA	103900193	103921505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_103900265_103909202_103909282_103911341_103911444_103920473_103920620_103921348
ENSMUST00000111132.8	chr2	+	436	4	FSM	ENSMUSG00000068686.13	ENSMUST00000111132.8	436	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	23.6690139681023	2359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTAACTGTCTTGGCTACA	NA	False	NA	NA	False	NA	NA	NA	103900193	103921532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_103900265_103909202_103909282_103911341_103911444_103921348
ENSMUST00000111134.2	chr1	-	1229	6	FSM	ENSMUSG00000055067.16	ENSMUST00000111134.2	1229	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	165.062412438447	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGTAGATCAAGGGGCAG	NA	False	NA	NA	False	NA	NA	NA	179345606	179222788	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_179223397_179232847_179232985_179237971_179238030_179239242_179239351_179250919_179250984_179345352
ENSMUST00000111142.9	chr5	+	2650	11	FSM	ENSMUSG00000004947.16	ENSMUST00000111142.9	2650	11	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_6	35.5758344947803	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTGGGAAGTTTTGTGT	8459	False	NA	16	True	AATAAA	-21	NA	136023653	136061726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_136023821_136025143_136025307_136038867_136039211_136040864_136041502_136050608_136050713_136055323_136055462_136057352_136057427_136057917_136058077_136059333_136059496_136060039_136060130_136061113
ENSMUST00000111145.10	chr5	+	2493	10	FSM	ENSMUSG00000004947.16	ENSMUST00000111145.10	2493	10	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	18.5279235376575	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGCATCTGTTGGGAAG	8470	False	NA	8	True	AATAAA	-13	NA	136023664	136061718	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_136023821_136025143_136025307_136038867_136039211_136040864_136041502_136050608_136050713_136057352_136057427_136057917_136058077_136059333_136059496_136060039_136060130_136061113
ENSMUST00000111147.8	chr2	-	4069	18	FSM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	0	0	0	0	multi-exon	FALSE	canonical	3	1559	junction_1	126.714184008996	499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTCATGTGTGGTTAT	NA	False	NA	-11	True	AATAAA	-17	NA	103627449	103595362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
ENSMUST00000111187.10	chr5	+	564	3	FSM	ENSMUSG00000029681.13	ENSMUST00000111187.10	564	3	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	118	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAAAGTGTCTATTTTTG	8775	False	NA	NA	False	AAAACA	-3	NA	135197242	135202302	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_135197453_135199940_135200017_135202024
ENSMUST00000111216.8	chr5	+	972	6	FSM	ENSMUSG00000040532.15	ENSMUST00000111216.8	972	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	236.865024855929	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCAACACTTTTAATGAAT	NA	False	NA	-29	True	NA	NA	NA	135038005	135040985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_135038070_135038835_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
ENSMUST00000111219.8	chr5	+	1790	6	FSM	ENSMUSG00000040557.15	ENSMUST00000111219.8	1790	6	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	38.8947297201048	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAATAGAAAGTAAAGAGA	3417	False	NA	NA	False	NA	NA	NA	134961226	134970577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_134961265_134961574_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
ENSMUST00000111230.8	chr1	+	1586	5	FSM	ENSMUSG00000026547.16	ENSMUST00000111230.8	1586	5	0	0	0	0	multi-exon	FALSE	canonical	3	984	junction_4	118.904373342615	3816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTGTTTCTAGGGCC	NA	False	NA	29	True	AATAAA	-26	NA	172327613	172334947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133
ENSMUST00000111264.8	chr1	-	2349	9	FSM	ENSMUSG00000026556.16	ENSMUST00000111264.8	2349	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	36.4520232634623	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTCTTCCTCAGTTTTT	NA	False	NA	30	True	NA	NA	NA	171854862	171831995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171836365_171836486_171837007_171837616_171840394_171840516_171840649_171840913_171854564
ENSMUST00000111266.8	chr2	+	2703	8	FSM	ENSMUSG00000068735.15	ENSMUST00000111266.8	2703	8	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	82.3119997699148	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGGTGTCCTGTTTTAT	NA	False	NA	20	True	NA	NA	NA	93017892	93032104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_93018093_93027241_93027324_93027953_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130
ENSMUST00000111269.2	chr14	+	459	3	FSM	ENSMUSG00000021963.18	ENSMUST00000111269.2	459	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1417.5	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCCCACAACTTCCGCAG	NA	False	NA	NA	False	AATAAA	-14	NA	58035674	58042426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_58035812_58035944_58036055_58042214
ENSMUST00000111295.8	chr1	+	1335	7	NIC	ENSMUSG00000013973.13	novel	2563	6	NA	NA	4277	3314	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAACCCCCCGGCCGGATG	9164	False	NA	NA	False	NA	NA	NA	171169811	171173213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr1_+_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173135
ENSMUST00000111299.8	chr1	+	2322	6	FSM	ENSMUSG00000013973.13	ENSMUST00000111299.8	2322	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	95.9804146688271	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATCCCACTTTTCTGA	1446	False	NA	NA	False	AATAAA	-11	NA	171156966	171169893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_171157095_171158801_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
ENSMUST00000111302.4	chr1	-	914	6	FSM	ENSMUSG00000062963.11	ENSMUST00000111302.4	914	6	0	0	0	0	multi-exon	FALSE	canonical	3	530	junction_3	38.9943585663362	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAAGATTTGGGCCTTGA	7320	False	NA	NA	False	AATGAA	-14	NA	171122560	171116284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117456_171117521_171117721_171117790_171122206
ENSMUST00000111307.2	chr5	-	932	3	FSM	ENSMUSG00000025534.18	ENSMUST00000111307.2	932	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	55.5	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTCGCTATTGTCTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	130031722	130028439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_130028911_130029597_130029784_130031447
ENSMUST00000111309.8	chr2	-	771	5	FSM	ENSMUSG00000027239.15	ENSMUST00000111309.8	771	5	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_4	1107.84859073792	3463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGCCCCTTCCCAGTT	NA	False	NA	NA	False	AATAAA	-42	NA	91762033	91760149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91761971
ENSMUST00000111318.8	chr1	-	1545	12	FSM	ENSMUSG00000013593.13	ENSMUST00000111318.8	1545	12	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_7	412.075336127544	7905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTAATGTGTCTTTCTT	NA	False	NA	-1	True	ATTAAA	-28	NA	171074691	171062421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
ENSMUST00000111320.8	chr1	+	470	4	FSM	ENSMUSG00000005681.13	ENSMUST00000111320.8	470	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	63.0467198900061	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCATGCCTCTTGTGTCTT	1396	False	NA	11	True	AATAAA	-17	NA	171052652	171053942	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_171052691_171052867_171052936_171053234_171053368_171053711
ENSMUST00000111321.8	chr1	+	518	4	FSM	ENSMUSG00000005681.13	ENSMUST00000111321.8	518	4	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	61.1791540386829	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCTTGTGTCTTTGGGTG	1366	False	NA	17	True	AATAAA	-23	NA	171052622	171053948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_171052691_171052855_171052936_171053234_171053368_171053711
ENSMUST00000111325.5	chr14	-	1255	6	FSM	ENSMUSG00000022223.10	ENSMUST00000111325.5	1255	6	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_5	35.4547599061113	1103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGGCTTCCGCTGTCTC	NA	False	NA	-6	True	AATAAA	-20	NA	56137715	56134739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103_56137187_56137270_56137378_56137646
ENSMUST00000111331.9	chr2	+	2883	13	FSM	ENSMUSG00000027247.17	ENSMUST00000111331.9	2883	13	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	81.5357368819887	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480462	91502671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_91480598_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
ENSMUST00000111343.2	chr5	+	2423	6	FSM	ENSMUSG00000029430.14	ENSMUST00000111343.2	2423	6	0	0	0	0	multi-exon	FALSE	canonical	3	14794	junction_4	293.478040064329	40533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGAGTCATCTCTAGT	545	False	NA	21	True	AATATA	-23	NA	129097335	129101387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
ENSMUST00000111352.8	chr2	-	2228	9	FSM	ENSMUSG00000002109.15	ENSMUST00000111352.8	2228	9	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_7	15.7594217850783	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCCTTTGTATCTAACTA	3094	False	NA	-57	True	AATAAA	-4	NA	91067230	91041947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91065297_91067034
ENSMUST00000111378.10	chr14	-	795	11	FSM	ENSMUSG00000079197.11	ENSMUST00000111378.10	795	11	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_10	298.855818079555	1203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTACCTGTGTTGTTCATTG	NA	False	NA	NA	False	AATAAA	-20	NA	55828558	55824898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55825023_55825110_55825198_55825496_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827163_55827489_55827553_55827951_55827985_55828478
ENSMUST00000111388.5	chr14	+	685	1	FSM	ENSMUSG00000044285.9	ENSMUST00000111388.5	685	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTATTCGGTCTGCATTC	NA	False	NA	NA	False	NA	NA	NA	46321584	46322269	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_46321600_46322300
ENSMUST00000111390.8	chr5	-	2367	12	FSM	ENSMUSG00000037936.16	ENSMUST00000111390.8	2367	12	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_1	58.8981471316135	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTGGCTTCTGTGACTG	NA	False	NA	-3	True	AATAAA	-19	NA	125418135	125354152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_125354930_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
ENSMUST00000111432.10	chr1	+	2163	4	FSM	ENSMUSG00000040713.13	ENSMUST00000111432.10	2163	4	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_1	24.0554914035583	2531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTGGACTGATTTCTG	NA	False	NA	NA	False	ATTAAA	-18	NA	165591314	165602877	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_165591708_165597381_165597502_165598200_165598386_165601412
ENSMUST00000111435.9	chr1	-	2285	6	FSM	ENSMUSG00000026566.16	ENSMUST00000111435.9	2285	6	0	0	0	0	multi-exon	TRUE	canonical	3	372	junction_2	205.630737002035	808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTGTCTGCTTGTTTT	NA	False	NA	-1	True	AATACA	-19	NA	165462098	165419808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_165421247_165429318_165429425_165432178_165432312_165433177_165433392_165436006_165436174_165461871
ENSMUST00000111453.2	chr5	+	1181	2	FSM	ENSMUSG00000029402.9	ENSMUST00000111453.2	1181	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTCCCTTTCTCACACCT	2544	False	NA	-7	True	AATAAA	-7	NA	124621520	124629170	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124621717_124628185
ENSMUST00000111464.8	chr2	+	2343	4	FSM	ENSMUSG00000005505.13	ENSMUST00000111464.8	2343	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	29.2726645334669	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTCTGTGTTGACT	2335	False	NA	NA	False	AATAAA	-42	NA	90735083	90740905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_90735157_90736009_90736628_90737888_90737996_90739360
ENSMUST00000111467.4	chr2	+	2281	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111467.4	2281	12	0	0	0	0	multi-exon	FALSE	canonical	3	421	junction_3	644.761587047671	2568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCATGCTTAGCCTGCTGC	214	False	NA	7	True	NA	NA	NA	90677616	90696984	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUST00000111468.10	chr2	+	1066	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111468.10	1066	12	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_1	628.312668913619	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGGTGATTGGTGTCTGC	119	False	NA	48	True	NA	NA	NA	90677521	90695732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_90677730_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUST00000111490.2	chr1	+	1419	2	FSM	ENSMUSG00000041396.14	ENSMUST00000111490.2	1419	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGACTGTTCAATTTCT	NA	False	NA	9	True	AATAAA	-16	NA	163822457	163824812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_163822547_163823482
ENSMUST00000111586.8	chr5	-	719	6	FSM	ENSMUSG00000029433.17	ENSMUST00000111586.8	719	6	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	270.536208297522	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTCAGAGAAAAATCTTAA	8965	False	NA	NA	False	ATTAAA	-14	NA	123662196	123654326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_123654516_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
ENSMUST00000111587.10	chr5	-	1576	6	FSM	ENSMUSG00000029433.17	ENSMUST00000111587.10	1576	6	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_3	53.1902246658162	1807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGTTTTCAGAATTGTT	8922	False	NA	-12	True	AATAAA	-25	NA	123662239	123649767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_123650771_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
ENSMUST00000111610.12	chr14	-	2847	9	FSM	ENSMUSG00000060373.16	ENSMUST00000111610.12	2847	9	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_5	1135.23408929612	8527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTTGGTATATACATCA	8725	False	NA	-31	True	AATAAA	-22	NA	52341485	52310833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUST00000111620.10	chr1	+	1910	5	FSM	ENSMUSG00000026708.17	ENSMUST00000111620.10	1910	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_2	18.1710621593786	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAGTTATTTATTCTGTT	NA	False	NA	20	True	AATAAA	-26	NA	160898336	160913908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160898927_160902326_160902501_160905798_160906051_160910477_160911021_160913557
ENSMUST00000111632.5	chr14	-	2103	15	FSM	ENSMUSG00000004558.16	ENSMUST00000111632.5	2103	15	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_6	11.1385064766607	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCATTGTTAATCCGGG	9982	False	NA	-11	True	AATAAA	-16	NA	52150945	52142739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148922_52149004_52150779
ENSMUST00000111644.2	chr6	+	2274	14	FSM	ENSMUSG00000001630.14	ENSMUST00000111644.2	2274	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_13	43.6006622825765	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTGATCAGTCAATGGAC	NA	False	NA	11	True	ATTAAA	-21	NA	146626533	146678054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_146626546_146659958_146660104_146661618_146661671_146667692_146667816_146668235_146668320_146668916_146669041_146669830_146669986_146670331_146670435_146670592_146670655_146673079_146673198_146673595_146673720_146674815_146674912_146676897_146676990_146677070
ENSMUST00000111663.9	chr6	+	2880	7	FSM	ENSMUSG00000040242.15	ENSMUST00000111663.9	2880	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	146.964470385041	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCTCAGGGTTAATTT	NA	False	NA	29	True	AATAAA	-20	NA	146479356	146500696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131_146494246_146496673_146496788_146498792
ENSMUST00000111664.8	chr2	-	1926	7	FSM	ENSMUSG00000050043.17	ENSMUST00000111664.8	1926	7	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_5	582.842865235181	2588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCCTTGCTGTTTTTCCTT	5229	False	NA	-7	True	AATAAA	-17	NA	84508462	84501659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506440_84506502_84508194
ENSMUST00000111721.2	chr6	+	1336	3	FSM	ENSMUSG00000040370.14	ENSMUST00000111721.2	1336	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	139.5	1115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAAGGAGTCTTTATC	NA	False	NA	14	True	NA	NA	NA	145156911	145162265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_145156971_145160909_145160998_145161076
ENSMUST00000111724.8	chr6	+	1618	4	FSM	ENSMUSG00000040370.14	ENSMUST00000111724.8	1618	4	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	142.199390528464	891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAAGGAGTCTTTATC	NA	False	NA	14	True	NA	NA	NA	145156900	145162265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_145156979_145160247_145160511_145160909_145160998_145161076
ENSMUST00000111726.10	chr6	+	1374	3	FSM	ENSMUSG00000040370.14	ENSMUST00000111726.10	1374	3	0	0	0	0	multi-exon	TRUE	canonical	3	230	junction_1	45.5	1430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAAGGAGTCTTTATC	NA	False	NA	14	True	NA	NA	NA	145156881	145162265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_145156979_145160909_145160998_145161076
ENSMUST00000111754.9	chr1	+	2491	3	FSM	ENSMUSG00000050565.17	ENSMUST00000111754.9	2491	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	87	506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGCAGGTTTTATTGTT	NA	False	NA	3	True	AATAAA	-15	NA	155911471	155929275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_155911667_155916820_155916881_155927039
ENSMUST00000111817.8	chr14	-	4171	7	FSM	ENSMUSG00000062014.14	ENSMUST00000111817.8	4171	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	212.21091447478	2084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTAGTGTTTTATTTTTT	NA	False	NA	-2	True	AATAAA	-18	NA	47059699	47045605	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_47049281_47051700_47051775_47052361_47052445_47053055_47053106_47053634_47053685_47054842_47054940_47059557
ENSMUST00000111833.3	chr2	-	631	3	FSM	ENSMUSG00000044033.17	ENSMUST00000111833.3	631	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	20	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGATTTTGATGTTAAT	NA	False	NA	NA	False	AATAAA	-13	NA	77000920	76992324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_76992641_76998854_76998978_77000728
ENSMUST00000111892.8	chr6	-	1153	6	FSM	ENSMUSG00000030220.14	ENSMUST00000111892.8	1153	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	4.60434577328853	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGAGTTGTCTTATGC	5824	False	NA	NA	False	AATAAA	-20	NA	136918501	136900652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_136901325_136903669_136903734_136906609_136906687_136909257_136909342_136910581_136910772_136918435
ENSMUST00000111953.2	chr5	-	772	3	FSM	ENSMUSG00000029363.15	ENSMUST00000111953.2	772	3	0	0	0	0	multi-exon	FALSE	canonical	3	1895	junction_2	55	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGAATTGTAGTACAGTT	NA	False	NA	NA	False	NA	NA	NA	117527110	117524345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_117524924_117525933_117525999_117526981
ENSMUST00000111957.10	chr1	+	580	4	FSM	ENSMUSG00000018196.19	ENSMUST00000111957.10	580	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	245.711664806989	2117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCGATTGGCCAGTTTT	NA	False	NA	31	True	AATAAA	-18	NA	143615352	143622514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_143615423_143617385_143617450_143620784_143620962_143622245
ENSMUST00000111960.2	chr6	+	1578	6	FSM	ENSMUSG00000030200.14	ENSMUST00000111960.2	1578	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_3	10	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAGTCTCTAACACTAT	NA	False	NA	5	True	GATAAA	-16	NA	134391390	134415078	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_134391599_134400573_134401026_134404258_134404424_134407028_134407100_134409108_134409376_134414663
ENSMUST00000111961.8	chr2	+	1734	10	FSM	ENSMUSG00000059005.14	ENSMUST00000111961.8	1734	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	3663.85558909979	4934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGGTTTTTGTGCAT	7494	False	NA	NA	False	AAAAAG	-13	NA	75489623	75496465	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75494016_75494059_75495371_75495495_75495577_75495646_75495741
ENSMUST00000111964.8	chr2	+	1654	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111964.8	1654	11	0	0	0	0	multi-exon	FALSE	canonical	3	3912	junction_1	2045.95805431099	8950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGAGTTAACACGTGAA	7475	False	NA	NA	False	NA	NA	NA	75489604	75496183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
ENSMUST00000111973.8	chr5	-	779	5	FSM	ENSMUSG00000032959.13	ENSMUST00000111973.8	779	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1144.02021398225	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTAGGGTGTCTTCCCTC	NA	False	NA	NA	False	NA	NA	NA	117425648	117421203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_117421531_117422128_117422195_117423785_117423887_117424199_117424310_117425473
ENSMUST00000111994.10	chr14	+	3343	10	FSM	ENSMUSG00000056234.16	ENSMUST00000111994.10	3343	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	198.662813783171	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCAGTTGTGTTTGTGTT	NA	False	NA	-2	True	ATTAAA	-13	NA	31887747	31901204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_31887780_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895_31898913_31899189_31899331_31899779
ENSMUST00000111996.8	chr2	-	723	5	FSM	ENSMUSG00000018770.10	ENSMUST00000111996.8	723	5	0	0	0	0	multi-exon	FALSE	canonical	3	880	junction_4	1495.60896878161	34852	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	-21	True	ATTAAA	-15	NA	73741669	73738790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741585
ENSMUST00000111999.8	chr5	-	2026	8	FSM	ENSMUSG00000029513.15	ENSMUST00000111999.8	2026	8	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_7	27.0313499024932	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACTTTTGACTCGGCACA	NA	False	NA	-4	True	AATAAA	-21	NA	116162567	116151648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541_116159706_116162149_116162319_116162423
ENSMUST00000112025.3	chr1	-	565	3	FSM	ENSMUSG00000079283.3	ENSMUST00000112025.3	565	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	463	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGTCCACAAGATGCACG	NA	False	NA	-1	True	ATTAAA	-16	NA	138784590	138779720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_138779912_138781308_138781411_138784318
ENSMUST00000112028.10	chr19	-	3136	12	FSM	ENSMUSG00000025198.17	ENSMUST00000112028.10	3136	12	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_11	27.8217466521579	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTGTGTTCTATTTTC	NA	False	NA	-2	True	AATAAA	-19	NA	44058224	44023382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058129
ENSMUST00000112047.10	chr19	+	1233	9	FSM	ENSMUSG00000025193.15	ENSMUST00000112047.10	1233	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	5.45435605731786	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATAGTCTCAGGTTCTTTC	9274	False	NA	16	True	AATAAA	-19	NA	43741536	43757077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_43741660_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751311_43751446_43753398_43753427_43755639_43755746_43756613
ENSMUST00000112050.2	chr2	+	1897	4	FSM	ENSMUSG00000008226.15	ENSMUST00000112050.2	1897	4	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	8.65383665716478	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGATTACTTTGGTTGTA	NA	False	NA	NA	False	AATAAA	-36	NA	73142997	73151140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646
ENSMUST00000112053.2	chr9	-	1054	2	FSM	ENSMUSG00000049734.10	ENSMUST00000112053.2	1054	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGACTGCTTGCCGCCTCT	NA	False	NA	-4	True	AATAAA	-13	NA	108888319	108887005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_108887997_108888256
ENSMUST00000112059.10	chr9	+	1910	6	FSM	ENSMUSG00000025647.17	ENSMUST00000112059.10	1910	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	78.9186923358465	959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTCTACTTCTTGAAC	NA	False	NA	71	True	NA	NA	NA	108867632	108886845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108867833_108869937_108870095_108880431_108880522_108885045_108885162_108885354_108885574_108885717
ENSMUST00000112090.2	chr5	-	729	2	FSM	ENSMUSG00000009013.6	ENSMUST00000112090.2	729	2	0	0	0	0	multi-exon	FALSE	canonical	3	3784	junction_1	0	3032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTCTAGTCCATACT	NA	False	NA	-4	True	AGTAAA	-17	NA	115438971	115436563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_115436893_115438571
ENSMUST00000112091.9	chrX	-	1447	3	FSM	ENSMUSG00000079316.11	ENSMUST00000112091.9	1447	3	0	0	0	0	multi-exon	FALSE	canonical	3	555	junction_2	7.5	4406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGTTGCAATGCTTTTTAA	NA	False	NA	-8	True	ATTAAA	-24	NA	165262863	165240248	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_165241340_165245310_165245339_165262535
ENSMUST00000112136.2	chr2	+	2548	18	FSM	ENSMUSG00000027012.16	ENSMUST00000112136.2	2548	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	255.153119100769	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCACTTTTACTTTTTGA	NA	False	NA	24	True	AATAAA	-26	NA	71042335	71093647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058170_71058189_71058943_71059035_71063992_71064053_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092994
ENSMUST00000112137.2	chrX	-	2316	12	FSM	ENSMUSG00000031358.18	ENSMUST00000112137.2	2316	12	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_9	6.17646827325928	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAGAGGAGTTTTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	167456894	167437112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167456723
ENSMUST00000112138.8	chr2	+	2466	16	FSM	ENSMUSG00000027012.16	ENSMUST00000112138.8	2466	16	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	83.3153580613376	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTCTCAAATTTTCACT	NA	False	NA	12	True	AATAAA	-14	NA	71042101	71093635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_71042190_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ENSMUST00000112139.8	chr2	+	2483	16	FSM	ENSMUSG00000027012.16	ENSMUST00000112139.8	2483	16	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_15	151.295501879233	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCAAATTTTCACTTTT	NA	False	NA	15	True	AATAAA	-17	NA	71042084	71093638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_71042190_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092994
ENSMUST00000112140.8	chr2	+	2573	18	FSM	ENSMUSG00000027012.16	ENSMUST00000112140.8	2573	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	243.567104215769	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCACTTTTACTTTTTGA	NA	False	NA	24	True	AATAAA	-26	NA	71042084	71093647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_71042190_71044782_71044900_71049644_71049763_71058170_71058189_71058943_71059035_71063992_71064053_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ENSMUST00000112143.4	chr5	+	2181	6	FSM	ENSMUSG00000041827.16	ENSMUST00000112143.4	2181	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	3.38230690505755	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGTCCTCATTTGTCAC	7858	False	NA	6	True	NA	NA	NA	115061322	115075974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_115061669_115066081_115066365_115067898_115068063_115070781_115071024_115073979_115074128_115074976
ENSMUST00000112144.9	chr2	+	2565	18	FSM	ENSMUSG00000027012.16	ENSMUST00000112144.9	2565	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	241.288883414706	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAATTTTCACTTTTACT	NA	False	NA	18	True	AATAAA	-20	NA	71042315	71093641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058170_71058189_71058943_71059035_71063992_71064053_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
ENSMUST00000112151.2	chr6	-	1108	3	FSM	ENSMUSG00000048668.17	ENSMUST00000112151.2	1108	3	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_2	100.5	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATGCAGCCTCGTGCCC	474	False	NA	-12	True	AATAAA	-36	NA	128339831	128334327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_128335157_128336068_128336318_128339801
ENSMUST00000112160.4	chr5	-	1333	2	FSM	ENSMUSG00000072694.9	ENSMUST00000112160.4	1333	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCTGCTGTTCTGTGC	719	False	NA	0	True	ATTAAA	-23	NA	114952037	114946256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_114947393_114951840
ENSMUST00000112172.4	chrX	-	768	3	FSM	ENSMUSG00000049775.17	ENSMUST00000112172.4	768	3	0	0	0	0	multi-exon	FALSE	canonical	3	1191	junction_1	25.5	8996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTGTCTGCTTGGTGA	NA	False	NA	0	True	AATAAA	-15	NA	165992311	165990088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_165990532_165990932_165991048_165992101
ENSMUST00000112176.8	chrX	-	698	3	FSM	ENSMUSG00000049775.17	ENSMUST00000112176.8	698	3	0	0	0	0	multi-exon	FALSE	canonical	1	19	junction_2	586	8485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGGTGTGTCTGCTTGGT	NA	False	NA	-2	True	AATAAA	-13	NA	165992145	165990090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_165990532_165990932_165991048_165992003
ENSMUST00000112186.9	chr2	-	2347	10	FSM	ENSMUSG00000041975.18	ENSMUST00000112186.9	2347	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_7	14.8332292963476	220	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTGTTGGAGTTTT	NA	False	NA	0	True	NA	NA	NA	70885927	70794904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70810720_70810771_70812198_70812540_70823827_70823920_70848563_70848719_70885714
ENSMUST00000112192.8	chrX	+	1294	4	FSM	ENSMUSG00000079317.11	ENSMUST00000112192.8	1294	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	114.126635317479	1177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATGTGGTCATTTGATG	NA	False	NA	7	True	AATAAA	-12	NA	165223771	165236134	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_165223836_165229786_165229899_165232783_165232900_165235132
ENSMUST00000112194.2	chrX	+	1418	5	FSM	ENSMUSG00000079317.11	ENSMUST00000112194.2	1418	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	111.246067346221	1418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTCATTTGATGCC	NA	False	NA	9	True	AATAAA	-14	NA	165228298	165236136	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_165228370_165229786_165229899_165232783_165232929_165233624_165233711_165235132
ENSMUST00000112205.2	chr2	+	1196	9	FSM	ENSMUSG00000014959.13	ENSMUST00000112205.2	1196	9	0	0	0	0	multi-exon	FALSE	canonical	3	630	junction_6	27.9463772249642	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGAGGCCTCCCGTTCAGTC	NA	False	NA	9	True	AATAAA	-18	NA	70491933	70519704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526
ENSMUST00000112210.11	chr14	-	2777	18	FSM	ENSMUSG00000021948.18	ENSMUST00000112210.11	2777	18	0	0	0	0	multi-exon	TRUE	canonical	3	76	junction_17	15.936508975905	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTGTGGGGACATTTA	5421	False	NA	-3	True	AATAAA	-17	NA	30348167	30317310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324693_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564_30329626_30331058_30331259_30332144_30332268_30347936
ENSMUST00000112221.8	chr6	-	1871	9	FSM	ENSMUSG00000030346.17	ENSMUST00000112221.8	1871	9	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	48.7748334184751	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCATGCCTCGCCTAGTT	5265	False	NA	-5	True	AATAAA	-21	NA	126916550	126900377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904654_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
ENSMUST00000112257.10	chrX	+	3212	6	FSM	ENSMUSG00000031381.17	ENSMUST00000112257.10	3212	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	78.77715404862	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTATTTTTGTCTCAGTTT	NA	False	NA	23	True	AATAAA	-23	NA	163202782	163216907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_163202837_163205579_163205983_163210927_163211061_163211535_163211669_163211806_163212014_163214625
ENSMUST00000112279.2	chr5	-	899	4	FSM	ENSMUSG00000044339.13	ENSMUST00000112279.2	899	4	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_3	133.312498372141	4521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTGTATTTGGGGGGGG	7978	False	NA	-11	True	AATAAA	-13	NA	114266279	114261995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_114262316_114263592_114263792_114265586_114265831_114266143
ENSMUST00000112294.9	chrX	+	3199	5	FSM	ENSMUSG00000031367.16	ENSMUST00000112294.9	3199	5	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	15.8192920195564	417	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTCATGTGAATGAC	NA	False	NA	-2	True	AATAAA	-13	NA	162692140	162712542	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162709898
ENSMUST00000112315.2	chrX	-	2525	6	FSM	ENSMUSG00000038344.15	ENSMUST00000112315.2	2525	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	64.8382603097893	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTATGTCTCATCTCCA	NA	False	NA	-7	True	AATAAA	-16	NA	161612450	161571913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_161573803_161580635_161580807_161590480_161590573_161594287_161594385_161594531_161594592_161612234
ENSMUST00000112320.8	chr2	-	1527	7	FSM	ENSMUSG00000005233.17	ENSMUST00000112320.8	1527	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	307.891214554751	4120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	-10	True	NA	NA	NA	69036479	69024238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036173
ENSMUST00000112324.2	chr5	-	1102	5	FSM	ENSMUSG00000042216.14	ENSMUST00000112324.2	1102	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	10.6389614154766	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAGAGTGGTGTCTGTCC	NA	False	NA	NA	False	ATTAAA	-18	NA	113428453	113421817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192
ENSMUST00000112326.8	chrX	+	1430	10	FSM	ENSMUSG00000031353.14	ENSMUST00000112326.8	1430	10	0	0	0	0	multi-exon	FALSE	canonical	3	2711	junction_3	178.323675750959	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	161543457	161558891	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731
ENSMUST00000112327.8	chrX	+	1862	12	FSM	ENSMUSG00000031353.14	ENSMUST00000112327.8	1862	12	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_3	868.427533053443	15663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGATTGGCTTTGCAGA	NA	False	NA	-32	True	NA	NA	NA	161543416	161561752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552786_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
ENSMUST00000112335.4	chr19	-	937	6	FSM	ENSMUSG00000024990.14	ENSMUST00000112335.4	937	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_5	4.31740662898458	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTCCTATGAGTTGAAGA	5209	False	NA	-5	True	ATTAAA	-13	NA	38113276	38105077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_38105358_38106719_38106933_38112476_38112584_38112743_38112881_38112966_38113096_38113205
ENSMUST00000112349.9	chr17	+	1728	14	FSM	ENSMUSG00000055817.19	ENSMUST00000112349.9	1728	14	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_11	233.064406873892	808	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTTTGTTTTTTTTTTT	NA	False	NA	12	True	AATAAA	-17	NA	84013591	84100304	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096346_84096472_84099081_84099231_84099970
ENSMUST00000112384.10	chr14	+	468	5	FSM	ENSMUSG00000025290.18	ENSMUST00000112384.10	468	5	0	0	0	0	multi-exon	FALSE	canonical	3	5102	junction_4	3158.6347030798	3189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGAGATTGGATACAGGTA	NA	False	NA	NA	False	NA	NA	NA	24540748	24545500	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545497
ENSMUST00000112386.8	chr1	+	1202	5	FSM	ENSMUSG00000026433.14	ENSMUST00000112386.8	1202	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	6.13901457890434	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGCATCTGCGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	131794961	131800477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
ENSMUST00000112413.8	chr6	+	672	4	FSM	ENSMUSG00000072770.10	ENSMUST00000112413.8	672	4	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_3	6.54896090146283	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACACATAAAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	125026909	125028460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_125027016_125027396_125027613_125027809_125027905_125028205
ENSMUST00000112417.9	chr6	+	1487	8	FSM	ENSMUSG00000030330.16	ENSMUST00000112417.9	1487	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	61.5119036099053	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7132	False	NA	7	True	AATAAA	-17	NA	125016823	125026228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024280_125024444_125024551_125024864_125024904_125025138_125025201_125025330
ENSMUST00000112426.8	chr5	-	1389	4	FSM	ENSMUSG00000029507.17	ENSMUST00000112426.8	1389	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	242.644229731972	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110927833	110921532	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110927552
ENSMUST00000112439.9	chr6	-	1328	8	FSM	ENSMUSG00000030127.16	ENSMUST00000112439.9	1328	8	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_1	503.213915644191	1569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATGTATGCCAGGAGAT	NA	False	NA	-16	True	ATTAAA	-13	NA	124942501	124935375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124935736_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
ENSMUST00000112446.9	chr1	+	2153	15	FSM	ENSMUSG00000026427.17	ENSMUST00000112446.9	2153	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_14	169.094301066184	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCTTTGTGTCTTATTT	NA	False	NA	NA	False	AGTAAA	-24	NA	131080917	131099976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131099657
ENSMUST00000112464.8	chrX	+	3366	12	FSM	ENSMUSG00000044150.13	ENSMUST00000112464.8	3366	12	0	0	0	0	multi-exon	TRUE	canonical	3	339	junction_9	109.675027103931	554	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTGAGAGCATTCTTTG	NA	False	NA	23	True	AATAAA	-36	NA	158315663	158376077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158375066
ENSMUST00000112482.2	chr5	+	747	6	FSM	ENSMUSG00000007080.15	ENSMUST00000112482.2	747	6	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_5	26.0967430918113	885	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGTGTTCTGTTTTGTGC	NA	False	NA	9	True	AATAAA	-15	NA	110434206	110439101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_110434316_110437098_110437241_110437647_110437729_110438091_110438137_110438270_110438364_110438824
ENSMUST00000112484.10	chr6	-	2219	16	FSM	ENSMUSG00000004266.16	ENSMUST00000112484.10	2219	16	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_10	22.1017847444248	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGTGCCCCTTGTATC	8730	False	NA	0	True	AATAAA	-28	NA	124710117	124697669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124697872_124698042_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124709908
ENSMUST00000112495.8	chr2	+	2039	8	FSM	ENSMUSG00000064289.16	ENSMUST00000112495.8	2039	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	9.53190132434987	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTCTGATGGGATTTA	NA	False	NA	NA	False	AATAAA	-30	NA	61423420	61484515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_61423553_61443994_61444143_61457249_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081_61480633_61483722
ENSMUST00000112505.9	chr5	-	2098	6	FSM	ENSMUSG00000029500.17	ENSMUST00000112505.9	2098	6	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_2	153.77594090104	1047	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTGTTTAGAAACCCTTT	NA	False	NA	5	True	AATAAA	-43	NA	110417779	110406995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_110408304_110413377_110413512_110413605_110413695_110413776_110413903_110414952_110415132_110417517
ENSMUST00000112507.4	chr17	-	2817	8	FSM	ENSMUSG00000002017.11	ENSMUST00000112507.4	2817	8	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	28.1765570527511	478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGGAGTTTTCTTTTA	NA	False	NA	-1	True	AATAAA	-22	NA	75858941	75844080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_75845857_75845941_75846110_75846395_75846513_75847105_75847187_75848190_75848376_75851742_75851878_75854605_75854755_75858735
ENSMUST00000112508.9	chr19	-	2839	11	FSM	ENSMUSG00000024766.16	ENSMUST00000112508.9	2839	11	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	12.3109707172099	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCTGTTTCTTAAAAGT	NA	False	NA	-1	True	NA	NA	NA	33567708	33532559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_33533880_33534506_33534579_33535664_33535737_33536911_33537056_33556761_33556899_33557864_33557975_33559452_33559652_33560446_33560565_33562269_33562376_33565600_33565744_33567290
ENSMUST00000112519.9	chr5	+	3159	18	FSM	ENSMUSG00000014668.16	ENSMUST00000112519.9	3159	18	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	36.3883322871989	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTGTTGTACTCCTGTG	NA	False	NA	21	True	AATAAA	-21	NA	110283714	110319837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
ENSMUST00000112528.8	chr5	+	3158	5	FSM	ENSMUSG00000023284.16	ENSMUST00000112528.8	3158	5	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_1	12.7744862910412	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTATTTGTGAAGATGT	1949	False	NA	NA	False	NA	NA	NA	110257957	110277660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_110258184_110259762_110259933_110271625_110271747_110272218_110272312_110275112
ENSMUST00000112529.8	chrX	-	3717	11	FSM	ENSMUSG00000071708.12	ENSMUST00000112529.8	3717	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	141.867156170835	3082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCCCGTCTCCATTATGC	NA	False	NA	-4	True	AATAAA	-11	NA	156275283	156226850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239105_156243322_156243413_156244171_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
ENSMUST00000112540.8	chr5	+	2081	4	FSM	ENSMUSG00000066613.15	ENSMUST00000112540.8	2081	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_3	47.4856703531591	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGTCATGGTATCTTT	8370	False	NA	22	True	NA	NA	NA	110144386	110158277	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_110144500_110154809_110154937_110155121_110155183_110156497
ENSMUST00000112551.4	chrX	-	896	6	FSM	ENSMUSG00000025283.16	ENSMUST00000112551.4	896	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	481.393144944961	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGAGGCAGAATTCTTGAA	NA	False	NA	NA	False	TTTAAA	-21	NA	153999341	153996310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_153996664_153996892_153996955_153997028_153997131_153998596_153998681_153998780_153998833_153999098
ENSMUST00000112580.8	chr6	+	2011	5	FSM	ENSMUSG00000012396.13	ENSMUST00000112580.8	2011	5	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_1	1758.10842953442	3589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684523	122691592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_122684568_122684770_122684893_122688496_122688763_122689587_122689675_122690100
ENSMUST00000112581.8	chr6	+	1995	5	FSM	ENSMUSG00000012396.13	ENSMUST00000112581.8	1995	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	1913.25775837967	3586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684447	122691592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_122684476_122684770_122684893_122688496_122688763_122689587_122689675_122690100
ENSMUST00000112598.9	chr14	+	802	3	FSM	ENSMUSG00000012405.17	ENSMUST00000112598.9	802	3	0	0	0	0	multi-exon	FALSE	canonical	3	10327	junction_1	2922.5	15367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGTAAAATTCATATCCAA	NA	False	NA	-38	True	AATACA	-8	NA	4199069	4200696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_4199418_4199652_4199790_4200379
ENSMUST00000112600.9	chr6	-	3127	14	FSM	ENSMUSG00000040669.15	ENSMUST00000112600.9	3127	14	0	0	0	0	multi-exon	FALSE	canonical	1	18	junction_13	317.929693392782	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCACACCTACCCTAATCC	8173	False	NA	-12	True	AATAAA	-13	NA	122317520	122295262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122317503
ENSMUST00000112617.4	chrX	+	992	6	FSM	ENSMUSG00000025260.11	ENSMUST00000112617.4	992	6	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	696.467486678309	16691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGCAGTCTTGTGTG	NA	False	NA	16	True	AATAAA	-16	NA	150784840	150787438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_150784931_150785273_150785439_150786356_150786522_150786618_150786778_150786857_150786967_150787134
ENSMUST00000112621.2	chr1	+	2338	24	FSM	ENSMUSG00000026339.19	ENSMUST00000112621.2	2338	24	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_9	17.1308761805856	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAGTATTGAGCAACTGC	NA	False	NA	NA	False	AATAAA	-14	NA	121358838	121429317	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_121358987_121362261_121362376_121365524_121365620_121369510_121369623_121373368_121373468_121375952_121376010_121383799_121383901_121389192_121389230_121389615_121389709_121389964_121390013_121390827_121390915_121403760_121403878_121405563_121405627_121408543_121408618_121409724_121409807_121410329_121410396_121411015_121411070_121414331_121414395_121418850_121418960_121420633_121420717_121422124_121422163_121424712_121424798_121426936_121427051_121428918
ENSMUST00000112644.9	chr1	+	488	6	FSM	ENSMUSG00000026388.16	ENSMUST00000112644.9	488	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	7.2773621594641	263	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTGATTTATCTCTA	NA	False	NA	15	True	AATAAA	-16	NA	120048924	120115919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_120048948_120078332_120078478_120088335_120088387_120093864_120093903_120099130_120099213_120115770
ENSMUST00000112651.8	chr5	+	2321	13	FSM	ENSMUSG00000033773.15	ENSMUST00000112651.8	2321	13	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_3	43.4808386916965	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTTTCAGAAGCTGACA	NA	False	NA	26	True	AATAAA	-19	NA	107745561	107809704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_107745727_107746387_107746434_107749596_107749726_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107809346
ENSMUST00000112695.4	chr5	-	1915	4	FSM	ENSMUSG00000049606.17	ENSMUST00000112695.4	1915	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	43.2897216438267	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAGTGCCTCTAATGTGA	NA	False	NA	-19	True	AATAAA	-14	NA	106844463	106764609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_106766295_106767405_106767509_106814650_106814712_106844397
ENSMUST00000112699.9	chrX	-	2183	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112699.9	2183	13	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_12	47.4332864839309	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGTCAAAGTTTCCATCTG	NA	False	NA	51	True	TTTAAA	-5	NA	149597341	149589365	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149597224
ENSMUST00000112700.8	chrX	-	2107	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_12	38.0929965858409	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	0	True	NA	NA	NA	149596703	149589416	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149596611
ENSMUST00000112703.8	chr6	-	1887	12	FSM	ENSMUSG00000030177.15	ENSMUST00000112703.8	1887	12	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_10	38.004349468349	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATCAAAACCAGAGAGGAA	NA	False	NA	NA	False	NA	NA	NA	120334433	120301995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120334287
ENSMUST00000112705.9	chr2	-	1130	8	FSM	ENSMUSG00000026946.10	ENSMUST00000112705.9	1130	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	2.91372543633873	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCAGTGTCTTCTTACT	8630	False	NA	NA	False	CATAAA	-13	NA	51863028	51838516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_51838789_51839995_51840103_51842453_51842641_51842787_51842895_51845937_51846101_51848908_51849005_51850582_51850673_51862920
ENSMUST00000112721.10	chrX	-	1852	6	FSM	ENSMUSG00000025269.17	ENSMUST00000112721.10	1852	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	32.5662401882686	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCATGTTGAGTGGATAT	NA	False	NA	-4	True	AATAAA	-21	NA	149371092	149354503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369063_149370038_149370123_149370918
ENSMUST00000112747.2	chr5	+	1507	6	FSM	ENSMUSG00000029304.15	ENSMUST00000112747.2	1507	6	0	0	0	0	multi-exon	FALSE	canonical	3	5474	junction_2	333.11595578717	19006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTAAGGAGTCTGGTGGT	NA	False	NA	24	True	AATAAA	-11	NA	104584057	104588909	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ENSMUST00000112748.8	chr5	+	1456	7	FSM	ENSMUSG00000029304.15	ENSMUST00000112748.8	1456	7	0	0	0	0	multi-exon	FALSE	canonical	3	593	junction_1	2050.93187491822	20583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGAGTCTGGTGGTGTCA	NA	False	NA	28	True	AATAAA	-15	NA	104582986	104588913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_104583115_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
ENSMUST00000112814.8	chrX	+	2027	7	FSM	ENSMUSG00000095872.8	ENSMUST00000112814.8	2027	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	6.51707159867238	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTGTTTGTGTGTGTG	NA	False	NA	NA	False	AATAAA	-19	NA	146548986	146616452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_146549079_146589721_146589848_146590566_146590647_146594315_146595275_146608125_146608208_146609013_146609064_146615814
ENSMUST00000112844.10	chr1	+	2046	8	FSM	ENSMUSG00000026333.15	ENSMUST00000112844.10	2046	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	7.99744857273052	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACGAAACTTTATCTGTGA	NA	False	NA	NA	False	AATAAA	-26	NA	97697896	97720694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_97697981_97703171_97703318_97705050_97705245_97710651_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
ENSMUST00000112862.7	chr2	+	1339	4	FSM	ENSMUSG00000026755.15	ENSMUST00000112862.7	1339	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	449.53704580997	5096	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGCTTCAAAAGTCATC	NA	False	NA	8	True	AATAAA	-19	NA	38898087	38905889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_38898357_38903126_38903200_38903734_38903912_38905069
ENSMUST00000112890.3	chr1	-	1055	2	FSM	ENSMUSG00000026281.16	ENSMUST00000112890.3	1055	2	0	0	0	0	multi-exon	FALSE	canonical	3	2511	junction_1	0	16036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCCGGCTTGTTTTGTTT	2338	False	NA	NA	False	NA	NA	NA	93729628	93727786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_93728633_93729419
ENSMUST00000112898.8	chr5	+	460	5	FSM	ENSMUSG00000016833.15	ENSMUST00000112898.8	460	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	755.69086768334	1423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCAACTAATTTGAGTGGA	NA	False	NA	41	True	AATAAA	-23	NA	100946602	100952327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100951835_100951896_100952197
ENSMUST00000112914.8	chrX	+	2484	4	FSM	ENSMUSG00000042271.14	ENSMUST00000112914.8	2484	4	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_3	9.93310961716756	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141011172	141022688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_141011378_141012519_141012607_141019779_141019925_141020641
ENSMUST00000112916.9	chrX	+	2532	5	FSM	ENSMUSG00000042271.14	ENSMUST00000112916.9	2532	5	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	39.4865483424419	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141009765	141022688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_141009928_141011286_141011378_141012519_141012607_141019779_141019925_141020641
ENSMUST00000112939.10	chr5	-	1670	8	FSM	ENSMUSG00000000568.16	ENSMUST00000112939.10	1670	8	0	0	0	0	multi-exon	FALSE	canonical	3	1800	junction_7	925.260845736521	1210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTCTTTTATCATCAGA	NA	False	NA	NA	False	AATAAA	-21	NA	100126776	100108856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_100109193_100110373_100110472_100111589_100111737_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100126250
ENSMUST00000112946.8	chr6	-	1554	12	FSM	ENSMUSG00000059900.15	ENSMUST00000112946.8	1554	12	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_11	22.1650458199018	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115736232	115706091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115718501_115718634_115719270_115719349_115735898
ENSMUST00000112978.2	chrX	-	1390	5	FSM	ENSMUSG00000031429.15	ENSMUST00000112978.2	1390	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	228.562218006389	2018	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCCCAATTTCTCATTC	NA	False	NA	-8	True	AATAAA	-11	NA	139857477	139849177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_139850059_139852974_139853063_139853153_139853301_139854548_139854648_139857302
ENSMUST00000112995.3	chrX	-	1790	3	FSM	ENSMUSG00000031431.14	ENSMUST00000112995.3	1790	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	112.5	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTGAGTGCATAA	NA	False	NA	NA	False	AATAAA	-26	NA	139443417	139440276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_139441857_139442853_139442906_139443259
ENSMUST00000113038.8	chr17	+	3483	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113038.8	3483	17	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_6	505.023262923353	759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	499	False	NA	36	True	AATAAA	-20	NA	56610399	56630486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ENSMUST00000113039.9	chr17	+	3391	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113039.9	3391	17	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_1	450.210766613816	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1447	False	NA	36	True	AATAAA	-20	NA	56611347	56630486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
ENSMUST00000113071.2	chrX	-	439	3	FSM	ENSMUSG00000089768.3	ENSMUST00000113071.2	439	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	50	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTAACTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	135877623	135874770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135874989_135876146_135876252_135877507
ENSMUST00000113080.9	chr2	-	1923	8	FSM	ENSMUSG00000035949.16	ENSMUST00000113080.9	1923	8	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_7	72.0294724259395	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCCTTTGTTCTTTGAAA	9201	False	NA	-6	True	ATTAAA	-12	NA	34716242	34695352	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34713080_34715973_34716083_34716183
ENSMUST00000113092.9	chr6	-	1269	9	FSM	ENSMUSG00000051169.15	ENSMUST00000113092.9	1269	9	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	15.858258889298	1060	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTACCAAGGACTGTG	NA	False	NA	-8	True	AATAAA	-42	NA	113396301	113392279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_113392684_113393267_113393408_113393749_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
ENSMUST00000113097.8	chrX	-	1825	4	FSM	ENSMUSG00000031422.17	ENSMUST00000113097.8	1825	4	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_3	1449.75867723639	1755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	AATAAA	-34	NA	135644439	135633690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135644341
ENSMUST00000113110.5	chr9	-	801	3	FSM	ENSMUSG00000079427.11	ENSMUST00000113110.5	801	3	0	0	0	0	multi-exon	TRUE	canonical	3	319	junction_2	104	3066	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAATCAATAGAAATTATT	NA	False	NA	NA	False	AATAAA	-20	NA	88601866	88570654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88571039_88597540_88597803_88601711
ENSMUST00000113112.2	chrX	+	826	3	FSM	ENSMUSG00000046432.13	ENSMUST00000113112.2	826	3	0	0	0	0	multi-exon	FALSE	canonical	3	533	junction_2	2270	25688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGCCACAAGAACTCTGA	NA	False	NA	NA	False	AATAAA	-18	NA	135171053	135172713	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_135171151_135171558_135171632_135172057
ENSMUST00000113113.2	chrX	+	766	2	FSM	ENSMUSG00000046432.13	ENSMUST00000113113.2	766	2	0	0	0	0	multi-exon	FALSE	canonical	3	4289	junction_1	0	20905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTGTCCTTAAAGCAT	NA	False	NA	NA	False	AATAAA	-16	NA	135171523	135172669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_135171632_135172011
ENSMUST00000113115.2	chrX	+	888	2	FSM	ENSMUSG00000042712.11	ENSMUST00000113115.2	888	2	0	0	0	0	multi-exon	FALSE	canonical	3	2732	junction_1	0	8303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAACAGCCCATCAATTTA	NA	False	NA	8	True	AATAAA	-24	NA	135146431	135147888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_135146516_135147084
ENSMUST00000113116.3	chrX	+	971	3	FSM	ENSMUSG00000079428.9	ENSMUST00000113116.3	971	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAGACTTGATCATTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	135124789	135126849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_135124841_135125650_135125722_135126000
ENSMUST00000113118.2	chrX	-	754	3	FSM	ENSMUSG00000050071.9	ENSMUST00000113118.2	754	3	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_1	2702.5	2357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACCTATTGTGAACCTA	NA	False	NA	-43	True	NA	NA	NA	135116233	135114761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135115333_135115694_135115730_135116085
ENSMUST00000113120.2	chrX	-	718	2	FSM	ENSMUSG00000050071.9	ENSMUST00000113120.2	718	2	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	0	4741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTCTGTACTCATCTTTT	NA	False	NA	-3	True	AATAAA	-16	NA	135116192	135114721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135115333_135116085
ENSMUST00000113127.7	chr5	-	4182	11	FSM	ENSMUSG00000029405.17	ENSMUST00000113127.7	4182	11	0	0	0	0	multi-exon	FALSE	canonical	3	1117	junction_4	208.26764030929	2245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTTATCTATGTCCCTA	NA	False	NA	-18	True	AATAAA	-15	NA	92231578	92200022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
ENSMUST00000113154.8	chrX	-	544	5	FSM	ENSMUSG00000060726.11	ENSMUST00000113154.8	544	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	4.9180788932265	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGGCTTGTTTTTGTAA	NA	False	NA	NA	False	AATAAA	-26	NA	134626010	134619415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_134619503_134620414_134620520_134621315_134621402_134624106_134624186_134625823
ENSMUST00000113156.2	chr2	-	1828	4	FSM	ENSMUSG00000026788.14	ENSMUST00000113156.2	1828	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	10.6770782520313	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGTTCTCATCCTGGCC	NA	False	NA	NA	False	ATTAAA	-20	NA	33358517	33343533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_33345136_33352277_33352370_33354925_33354987_33358444
ENSMUST00000113189.8	chrX	-	2375	22	FSM	ENSMUSG00000009941.11	ENSMUST00000113189.8	2375	22	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	7.21770310384392	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTATGTCTTGAAGTGCT	NA	False	NA	-2	True	AATAAA	-18	NA	133865503	133845276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_133845538_133845640_133845702_133850435_133850616_133851095_133851169_133851717_133851761_133851850_133851967_133852078_133852138_133852238_133852347_133852497_133852554_133852635_133852891_133853240_133853278_133855976_133856087_133856257_133856366_133856471_133856561_133856713_133856784_133856913_133856995_133857111_133857217_133857340_133857425_133857798_133857953_133858216_133858320_133862672_133862768_133865376
ENSMUST00000113197.2	chrX	+	2179	5	FSM	ENSMUSG00000033460.15	ENSMUST00000113197.2	2179	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	75.7310207246674	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618768	133622666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_133618800_133619118_133619211_133619668_133619742_133620375_133620475_133620782
ENSMUST00000113198.8	chrX	+	2085	4	FSM	ENSMUSG00000033460.15	ENSMUST00000113198.8	2085	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_3	26.0895892391327	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAAGCACTGTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	133618761	133622657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_133618800_133619668_133619742_133620375_133620475_133620782
ENSMUST00000113199.8	chrX	+	2413	6	FSM	ENSMUSG00000033460.15	ENSMUST00000113199.8	2413	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	37.1020215082683	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGCACTGTCTTTGT	NA	False	NA	NA	False	AATAAA	-20	NA	133618736	133622659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619858_133620375_133620475_133620782
ENSMUST00000113203.2	chrX	+	2315	2	FSM	ENSMUSG00000045427.14	ENSMUST00000113203.2	2315	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	2167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGCATAGTTTGATTTTC	NA	False	NA	NA	False	AATAAA	-25	NA	133501973	133507809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_133502083_133505603
ENSMUST00000113211.8	chrX	+	483	5	FSM	ENSMUSG00000079435.10	ENSMUST00000113211.8	483	5	0	0	0	0	multi-exon	FALSE	canonical	3	10431	junction_4	1336.12412877696	260708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAAGTTTTTCTCCTGTT	NA	False	NA	75	True	ATTAAA	-16	NA	133486402	133488805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_133486469_133486826_133486933_133487259_133487328_133488199_133488323_133488685
ENSMUST00000113231.4	chr1	+	1119	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113231.4	1119	7	0	0	0	0	multi-exon	FALSE	canonical	3	1076	junction_1	458.210801802935	14503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTCATGCTCTTGCTC	NA	False	NA	15	True	AATAAA	-15	NA	87142007	87155786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
ENSMUST00000113232.8	chr1	+	1125	6	FSM	ENSMUSG00000026254.18	ENSMUST00000113232.8	1125	6	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_1	545.938677875089	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCACCTTTGCATGTCTG	NA	False	NA	NA	False	AATAAA	-23	NA	87141635	87154329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818
ENSMUST00000113233.8	chr1	+	1807	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113233.8	1807	7	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_1	498.771713534581	9960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTGGGTTGTCTGAATG	NA	False	NA	NA	False	ATTAAA	-14	NA	87141635	87156578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
ENSMUST00000113235.8	chr1	+	3473	8	FSM	ENSMUSG00000026254.18	ENSMUST00000113235.8	3473	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	1022.13094732005	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGAGTCTCCTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	87141635	87168210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87160124_87160204_87165567
ENSMUST00000113239.10	chr6	-	2084	11	FSM	ENSMUSG00000005362.15	ENSMUST00000113239.10	2084	11	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_5	22.0871003076456	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGCTCCTTAATGTCATT	NA	False	NA	-33	True	AATAAA	-17	NA	106777035	106757161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_106758072_106758663_106758796_106759423_106759489_106759871_106759988_106760385_106760471_106761377_106761441_106767792_106767953_106771148_106771299_106771955_106772159_106772842_106772959_106776951
ENSMUST00000113248.4	chr6	+	1398	9	FSM	ENSMUSG00000013736.17	ENSMUST00000113248.4	1398	9	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	232.818296907696	802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTAAAACTAAATGAAGAGT	NA	False	NA	NA	False	NA	NA	NA	106746126	106758615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_106746153_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
ENSMUST00000113277.8	chr2	+	2063	7	FSM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	98.788775790685	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAAGTGAGTGTATTGA	NA	False	NA	13	True	AATAAA	-17	NA	32515448	32525066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_32515551_32518462_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
ENSMUST00000113301.2	chr17	-	594	3	FSM	ENSMUSG00000033475.16	ENSMUST00000113301.2	594	3	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	2129.5	2069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTATTTTATTCTTTT	NA	False	NA	-12	True	AATAAA	-15	NA	47998993	47997664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_47997988_47998112_47998214_47998823
ENSMUST00000113306.4	chr1	+	2582	2	FSM	ENSMUSG00000079445.4	ENSMUST00000113306.4	2582	2	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_1	0	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGCTGCTTCCTTGGTCTT	NA	False	NA	36	True	AATAAA	-27	NA	86230955	86235027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_86231277_86232766
ENSMUST00000113369.3	chr19	+	2013	11	FSM	ENSMUSG00000024968.15	ENSMUST00000113369.3	2013	11	0	0	0	0	multi-exon	FALSE	canonical	3	1016	junction_10	67.7507195533745	713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTCTTCCATGTGTGCT	NA	False	NA	21	True	AATAAA	-16	NA	7247128	7252589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_7247187_7247465_7247547_7247918_7247972_7248062_7248225_7248334_7248460_7248557_7248628_7248703_7248920_7250464_7250543_7251197_7251256_7251384_7251615_7251707
ENSMUST00000113397.9	chr2	-	580	4	FSM	ENSMUSG00000044627.12	ENSMUST00000113397.9	580	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	1606.82426612938	3157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178017	32168827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_32169144_32170720_32170816_32177608_32177658_32177897
ENSMUST00000113400.3	chr2	-	522	5	FSM	ENSMUSG00000044627.12	ENSMUST00000113400.3	522	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	1473.86522026269	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATTGGGAGGGGTGGGT	NA	False	NA	-114	True	NA	NA	NA	32178081	32168929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32178042
ENSMUST00000113423.10	chr19	+	990	4	FSM	ENSMUSG00000024959.15	ENSMUST00000113423.10	990	4	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	15.9234278833282	850	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCGCCTCTATCCTTCG	9321	False	NA	10	True	AATAAA	-15	NA	6919868	6929261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6919993_6920234_6920415_6928007_6928199_6928766
ENSMUST00000113428.9	chrX	-	4135	23	FSM	ENSMUSG00000025665.17	ENSMUST00000113428.9	4135	23	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_4	54.455987232393	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTTAGTCTTGGTGTAG	NA	False	NA	-7	True	ATTAAA	-30	NA	110372892	110297889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309967_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546
ENSMUST00000113429.8	chr17	+	998	7	FSM	ENSMUSG00000002767.14	ENSMUST00000113429.8	998	7	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	389.469903273097	6421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCTTACTACCTTTTCAC	NA	False	NA	27	True	AATAAA	-16	NA	46957175	46961057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959514_46959595_46959696_46959960_46960035_46960809
ENSMUST00000113430.2	chr17	+	991	7	FSM	ENSMUSG00000002767.14	ENSMUST00000113430.2	991	7	0	0	0	0	multi-exon	FALSE	canonical	1	17	junction_1	404.985047734961	6400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCTTTTCACTTGGGAGG	NA	False	NA	35	True	AATAAA	-24	NA	46957195	46961065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_46957325_46958321_46958485_46959162_46959305_46959397_46959514_46959584_46959696_46959960_46960035_46960809
ENSMUST00000113453.9	chr5	-	1113	3	FSM	ENSMUSG00000059325.15	ENSMUST00000113453.9	1113	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	1.5	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGGAGTCTTTTTTTTT	3143	False	NA	-3	True	ATTAAA	-20	NA	77243124	77234834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_77235664_77242712_77242870_77242997
ENSMUST00000113471.3	chr19	+	535	4	FSM	ENSMUSG00000032946.17	ENSMUST00000113471.3	535	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	116.70761186258	2335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6451731	6453668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6451894_6452501_6452605_6453053_6453117_6453461
ENSMUST00000113475.8	chr19	+	573	5	FSM	ENSMUSG00000032946.17	ENSMUST00000113475.8	573	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	121.807994401024	929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAATGAGTGAGGGTCATG	NA	False	NA	9	True	NA	NA	NA	6449485	6453663	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6449548_6451750_6451894_6452501_6452605_6453053_6453117_6453461
ENSMUST00000113482.8	chr2	+	3268	19	FSM	ENSMUSG00000026843.16	ENSMUST00000113482.8	3268	19	0	0	0	0	multi-exon	TRUE	canonical	3	465	junction_18	67.3624112131124	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTTTTGTTTGCTGGCC	493	False	NA	36	True	AATAAA	-37	NA	31462662	31507538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505638_31506190
ENSMUST00000113485.9	chr19	+	3221	12	FSM	ENSMUSG00000024949.18	ENSMUST00000113485.9	3221	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	431.203485933256	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGTTTCTTTTCTTTTAA	834	False	NA	21	True	AATAAA	-21	NA	6413951	6427232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6414149_6415693_6415823_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424318_6424578_6424639_6424748_6424929_6425687
ENSMUST00000113487.8	chr19	+	2649	13	FSM	ENSMUSG00000024949.18	ENSMUST00000113487.8	2649	13	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_12	242.538814190407	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	834	False	NA	15	True	AATAAA	-15	NA	6413951	6427226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6426325
ENSMUST00000113489.8	chr19	+	2863	13	FSM	ENSMUSG00000024949.18	ENSMUST00000113489.8	2863	13	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_10	368.940026366828	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTTTCTTTTCTTTTAAA	631	False	NA	22	True	AATAAA	-22	NA	6413748	6427233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424318_6424578_6424639_6424748_6424929_6426325
ENSMUST00000113528.2	chr19	+	1562	11	FSM	ENSMUSG00000024786.10	ENSMUST00000113528.2	1562	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	3.41906419945575	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACTGCCCTGAGGTTTA	8117	False	NA	10	True	AATAAA	-26	NA	6234496	6274255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6234613_6245693_6245811_6256247_6256294_6261633_6261710_6262157_6262284_6263026_6263059_6263328_6263427_6265175_6265240_6271702_6271776_6272677_6272787_6273550
ENSMUST00000113535.9	chr5	+	1969	16	FSM	ENSMUSG00000029227.16	ENSMUST00000113535.9	1969	16	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_11	150.805393360671	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAAAGCTTTGTCTTGT	NA	False	NA	22	True	AATAAA	-23	NA	74696141	74756806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
ENSMUST00000113550.6	chr6	-	1042	7	FSM	ENSMUSG00000030086.17	ENSMUST00000113550.6	1042	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	87.7648373021147	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGTCACTTCTGTTGAC	NA	False	NA	0	True	AATAAA	-37	NA	89572634	89360127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_89360331_89361585_89361722_89396729_89396801_89544568_89544714_89546324_89546395_89551349_89551573_89572440
ENSMUST00000113552.9	chr2	-	1910	9	FSM	ENSMUSG00000075415.14	ENSMUST00000113552.9	1910	9	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_4	13.559475469206	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTTTTGTGTCTTCTT	4837	False	NA	-13	True	NA	NA	NA	31031951	30943246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
ENSMUST00000113581.8	chr6	+	1308	9	FSM	ENSMUSG00000033174.18	ENSMUST00000113581.8	1308	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	5.7227615711298	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGAGTATATTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	88701475	88802972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_88701554_88702682_88702828_88741577_88741685_88784992_88785130_88786317_88786429_88790861_88790946_88795555_88795646_88800172_88800389_88802632
ENSMUST00000113584.8	chr1	+	1692	14	FSM	ENSMUSG00000033021.17	ENSMUST00000113584.8	1692	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	88.7478310427522	601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	12	True	AATAAA	-16	NA	75412586	75419817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_75412656_75412789_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
ENSMUST00000113598.8	chr6	-	2031	6	FSM	ENSMUSG00000079477.10	ENSMUST00000113598.8	2031	6	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_5	727.359718433733	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGAACAGCTGCTGTC	NA	False	NA	NA	False	AATAAA	-11	NA	88021999	87976098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88021918
ENSMUST00000113600.10	chr6	-	2159	6	FSM	ENSMUSG00000079477.10	ENSMUST00000113600.10	2159	6	0	0	0	0	multi-exon	FALSE	canonical	3	1571	junction_1	157.281403859452	2661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTCTTTTTCT	NA	False	NA	NA	False	AATAAA	-22	NA	88022252	87976087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
ENSMUST00000113605.10	chr1	-	1571	15	FSM	ENSMUSG00000026209.16	ENSMUST00000113605.10	1571	15	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_14	185.094639334056	1097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	-1	True	ATTAAA	-17	NA	75293589	75285208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293534
ENSMUST00000113610.3	chrX	-	420	3	FSM	ENSMUSG00000079479.3	ENSMUST00000113610.3	420	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	3	218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGACTTCGTGAAAATT	NA	False	NA	NA	False	AATAAA	-22	NA	101751241	101750495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_101750648_101750793_101750958_101751137
ENSMUST00000113617.3	chr6	-	952	6	FSM	ENSMUSG00000030057.16	ENSMUST00000113617.3	952	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_4	4719.63282470151	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATTTCTGCATTTAACTA	NA	False	NA	-47	True	NA	NA	NA	87828042	87820868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87825996_87826092_87827885
ENSMUST00000113619.8	chr6	-	1661	5	FSM	ENSMUSG00000030057.16	ENSMUST00000113619.8	1661	5	0	0	0	0	multi-exon	FALSE	canonical	3	2802	junction_3	3497.63613030286	18631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGACAGTTTGGACTT	NA	False	NA	-9	True	ATTAAA	-21	NA	87828062	87820063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822658_87822776_87827885
ENSMUST00000113621.10	chr2	-	1851	13	FSM	ENSMUSG00000026860.17	ENSMUST00000113621.10	1851	13	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_7	147.537824716993	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGATCTCAGTCCATG	NA	False	NA	-12	True	AATAAA	-14	NA	30249344	30234822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30239237_30239250_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ENSMUST00000113627.4	chrX	+	489	4	FSM	ENSMUSG00000079480.4	ENSMUST00000113627.4	489	4	0	0	0	0	multi-exon	FALSE	canonical	3	1046	junction_3	75.7495874576225	22441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTGTTTTCTATTTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	101163052	101171275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_101163171_101165273_101165348_101170622_101170743_101171098
ENSMUST00000113645.8	chr2	+	1325	12	FSM	ENSMUSG00000079484.13	ENSMUST00000113645.8	1325	12	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_1	18.5338644710542	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	9917	False	NA	NA	False	AATAAA	-17	NA	30156732	30172160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_30156803_30156874_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
ENSMUST00000113662.8	chr2	-	1850	13	FSM	ENSMUSG00000039648.15	ENSMUST00000113662.8	1850	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_12	43.4421710118431	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCAGCTTCTCTCTTCCT	NA	False	NA	-5	True	AATAAA	-23	NA	30095787	30075137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084173_30095644
ENSMUST00000113663.9	chr2	-	2026	14	FSM	ENSMUSG00000039648.15	ENSMUST00000113663.9	2026	14	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_13	49.789616559678	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCAAGGCAGCTTCTCTC	NA	False	NA	-10	True	AATAAA	-18	NA	30095813	30075142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30087968_30088172_30095644
ENSMUST00000113669.9	chr17	-	742	4	FSM	ENSMUSG00000036315.14	ENSMUST00000113669.9	742	4	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_1	61.9157133170212	9303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGATGTTATGTGTGTT	NA	False	NA	-11	True	ACTAAA	-17	NA	37269374	37265247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040
ENSMUST00000113682.9	chr15	+	1480	7	FSM	ENSMUSG00000001285.13	ENSMUST00000113682.9	1480	7	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_2	12.1620995994387	1436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACCCTAGGAGTACATAAC	5927	False	NA	NA	False	AATAGA	-3	NA	102240143	102246574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102240389_102240524_102240638_102242636_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
ENSMUST00000113685.10	chr9	-	1208	10	FSM	ENSMUSG00000032366.16	ENSMUST00000113685.10	1208	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_8	231.53598765688	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGGTACTTTTTTATT	NA	False	NA	1	True	AATAAA	-22	NA	66956495	66935173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
ENSMUST00000113686.8	chr9	-	998	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113686.8	998	8	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_1	241.339544025019	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATTCTTTTACTCCTTA	NA	False	NA	-8	True	AATAAA	-21	NA	66951123	66935247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_66935450_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUST00000113695.8	chr9	-	1607	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113695.8	1607	8	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_4	182.146722648058	955	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGTGGTCCTGTCGTC	NA	False	NA	-2	True	AATAAA	-24	NA	66951084	66929873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUST00000113696.8	chr9	-	1714	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113696.8	1714	8	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	100.853500541273	1155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGGTCCTGTCGTCTG	NA	False	NA	0	True	AATAAA	-26	NA	66951189	66929871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
ENSMUST00000113697.8	chr9	-	1742	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113697.8	1742	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	230.863460729497	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCACATTTAGGACATTTT	NA	False	NA	-25	True	AATAAA	-1	NA	66956557	66929896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
ENSMUST00000113711.3	chr2	-	1814	9	FSM	ENSMUSG00000039715.9	ENSMUST00000113711.3	1814	9	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_3	11.9973955507018	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAGAGCCCCAAGGAGCA	NA	False	NA	0	True	NA	NA	NA	29938893	29921557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_29921985_29922084_29922243_29922413_29922647_29922761_29922930_29923285_29923396_29923817_29923976_29924774_29924885_29928186_29928439_29938695
ENSMUST00000113718.8	chrX	-	3278	30	FSM	ENSMUSG00000009670.12	ENSMUST00000113718.8	3278	30	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_6	15.4932381399703	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCATTGATCAGCTGATT	NA	False	NA	-5	True	AATAAA	-16	NA	100103273	99882253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_99882667_99883306_99883472_99892654_99892776_99893874_99893984_99895431_99895582_99920141_99920217_99923584_99923700_99925849_99925921_99926528_99926616_99927967_99928009_99947363_99947421_99949724_99949811_99960131_99960257_99976993_99977097_99990261_99990400_99995170_99995257_99998305_99998458_100015699_100015779_100018785_100018868_100021229_100021326_100029298_100029354_100051308_100051395_100059149_100059231_100076103_100076224_100076306_100076388_100082652_100082733_100087046_100087132_100094064_100094187_100102961_100103024_100103118
ENSMUST00000113721.8	chr1	-	1451	10	FSM	ENSMUSG00000026171.13	ENSMUST00000113721.8	1451	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	27.6463557752974	1239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAGCCTATGTGGTATGA	NA	False	NA	NA	False	AATAAA	-25	NA	74640536	74632911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_74633562_74633718_74633854_74634367_74634458_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851_74637952_74638224_74638300_74640483
ENSMUST00000113732.2	chr1	+	1679	8	FSM	ENSMUSG00000026172.13	ENSMUST00000113732.2	1679	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	48.4072856719156	981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGGTACCTACAAGATCTA	1216	False	NA	13	True	AATAAA	-14	NA	74627532	74631348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_74627764_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
ENSMUST00000113733.10	chr1	+	1488	8	FSM	ENSMUSG00000026172.13	ENSMUST00000113733.10	1488	8	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	21.8136822818587	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGCTTGTGCCTTTCCTC	1131	False	NA	4	True	CATAAA	-16	NA	74627447	74631283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_74627553_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
ENSMUST00000113755.8	chr2	+	2305	17	FSM	ENSMUSG00000026790.20	ENSMUST00000113755.8	2305	17	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_4	168.994082736645	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7226	False	NA	13	True	AATAAA	-17	NA	29779829	29812551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ENSMUST00000113756.8	chr2	+	3826	21	FSM	ENSMUSG00000026790.20	ENSMUST00000113756.8	3826	21	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_4	191.01803579767	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCAGACTCCTTTGATTT	7203	False	NA	13	True	AATAAA	-13	NA	29779806	29821757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
ENSMUST00000113759.9	chr2	+	3807	21	FSM	ENSMUSG00000026790.20	ENSMUST00000113759.9	3807	21	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	298.874656001475	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCAGACTCCTTTGATTT	7225	False	NA	13	True	AATAAA	-13	NA	29779828	29821757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802577_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
ENSMUST00000113767.8	chr2	+	2249	16	FSM	ENSMUSG00000026790.20	ENSMUST00000113767.8	2249	16	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	277.041625432393	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7128	False	NA	13	True	AATAAA	-17	NA	29779731	29812551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29779934_29782197_29782289_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
ENSMUST00000113782.10	chr17	-	803	4	FSM	ENSMUSG00000024436.17	ENSMUST00000113782.10	803	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	650.773044582791	584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTCCCTTTGGGCTGT	4296	False	NA	-6	True	AATAAA	-21	NA	36227281	36221270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36221849_36222310_36222371_36223229_36223297_36227183
ENSMUST00000113805.8	chr1	+	740	3	FSM	ENSMUSG00000026179.15	ENSMUST00000113805.8	740	3	0	0	0	0	multi-exon	FALSE	canonical	3	1381	junction_1	89	7582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCCAGGTTGAATTTGT	NA	False	NA	6	True	AATAAA	-24	NA	74324088	74326613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_74324297_74325000_74325170_74326250
ENSMUST00000113807.10	chr2	-	1035	7	FSM	ENSMUSG00000039826.14	ENSMUST00000113807.10	1035	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	64.3810272259356	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGGTCTCTTCTTCTTC	NA	False	NA	NA	False	NA	NA	NA	29677660	29651235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_29651701_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
ENSMUST00000113811.8	chrX	+	930	8	FSM	ENSMUSG00000047694.13	ENSMUST00000113811.8	930	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	86.4662255638889	927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGATATTTGCAAGGCT	NA	False	NA	26	True	ATTAAA	-36	NA	97979921	97988737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_97979952_97981791_97981895_97983378_97983508_97983727_97983807_97984392_97984436_97986383_97986513_97987083_97987242_97988478
ENSMUST00000113819.2	chr1	+	1313	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113819.2	1313	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	696.999605451825	4557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATTCC	7881	False	NA	18	True	NA	NA	NA	74275708	74307147	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_74275770_74275976_74276207_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
ENSMUST00000113820.9	chr1	+	1439	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113820.9	1439	11	0	0	0	0	multi-exon	TRUE	canonical	3	1389	junction_1	306.215936881149	6279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGAATTTGTTGATTTT	7828	False	NA	14	True	AATAAA	-19	NA	74275655	74307368	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_74275770_74275976_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
ENSMUST00000113836.6	chr6	+	4366	26	FSM	ENSMUSG00000030016.15	ENSMUST00000113836.6	4366	26	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_22	87.4304294853914	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTTGTGTTTGTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	83891371	83963851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953337_83958663_83958768_83960957_83961057_83961758_83961878_83963539
ENSMUST00000113842.4	chr6	-	1002	1	FSM	ENSMUSG00000079501.4	ENSMUST00000113842.4	1002	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	154	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCCTGGACCACCCACC	NA	False	NA	NA	False	NA	NA	NA	83852362	83851360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83851400_83852400
ENSMUST00000113851.8	chr6	+	1323	10	FSM	ENSMUSG00000034744.14	ENSMUST00000113851.8	1323	10	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	71.6054001687955	1107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCAGGGTGTCATCTTCCA	9304	False	NA	11	True	AATAAA	-19	NA	83772009	83779536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83772231_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
ENSMUST00000113888.3	chr6	-	1007	6	FSM	ENSMUSG00000014554.14	ENSMUST00000113888.3	1007	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	78.3019795407498	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483951	83457198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83457419_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
ENSMUST00000113896.8	chrX	+	1032	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113896.8	1032	9	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	148.965547610849	5468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTGCTTTCTTTACT	NA	False	NA	NA	False	ATTAAA	-18	NA	93410770	93460699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_93410933_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
ENSMUST00000113897.9	chrX	+	1218	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113897.9	1218	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	150.255979498321	5527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTGCTTTCTTTACT	NA	False	NA	NA	False	ATTAAA	-18	NA	93410759	93460699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_93411108_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
ENSMUST00000113898.8	chrX	+	784	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113898.8	784	9	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_1	51.8975854447969	1557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTTGGGTGATGCCATA	NA	False	NA	NA	False	AGTAAA	-39	NA	93410722	93460567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_93410769_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
ENSMUST00000113904.9	chr5	+	2485	13	FSM	ENSMUSG00000029179.15	ENSMUST00000113904.9	2485	13	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_12	14.4327944472148	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTCAGTTGTTATTCC	NA	False	NA	21	True	ATTAAA	-17	NA	52940395	52982007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462_52976608_52980959
ENSMUST00000113905.8	chr16	-	758	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113905.8	758	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	183.830084589003	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171874	94165305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171753
ENSMUST00000113906.9	chr16	-	745	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113906.9	745	5	0	0	0	0	multi-exon	TRUE	canonical	3	162	junction_4	117.933243828871	1653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171571	94165305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171463
ENSMUST00000113908.8	chrX	+	1235	4	FSM	ENSMUSG00000043929.17	ENSMUST00000113908.8	1235	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	24.3447461820136	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTCAGCAGCCTGGCAT	NA	False	NA	NA	False	AATAAA	-20	NA	93278532	93297669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_93278732_93278826_93279027_93296020_93296733_93297545
ENSMUST00000113910.8	chr16	-	966	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113910.8	966	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_4	95.9283586850104	2144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171553	94165305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171224
ENSMUST00000113911.9	chrX	+	1227	5	FSM	ENSMUSG00000043929.17	ENSMUST00000113911.9	1227	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	15.1224171348366	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCAGCCTGGCATGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	93278595	93297673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_93278732_93278826_93279027_93285550_93285602_93296020_93296733_93297545
ENSMUST00000113925.8	chrX	-	879	4	FSM	ENSMUSG00000079509.11	ENSMUST00000113925.8	879	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	30.6920185064456	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTGTCCAGGTGTGATG	NA	False	NA	NA	False	ATTAAA	-28	NA	93166715	93141779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_93142459_93145896_93145987_93157801_93157870_93166673
ENSMUST00000113936.10	chr6	-	1314	4	FSM	ENSMUSG00000030035.15	ENSMUST00000113936.10	1314	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	56.6627449623354	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGATTCTGGGTAGAG	NA	False	NA	-7	True	ATTAAA	-17	NA	83098540	83096024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83098183
ENSMUST00000113938.5	chr6	+	695	3	FSM	ENSMUSG00000030037.10	ENSMUST00000113938.5	695	3	0	0	0	0	multi-exon	FALSE	canonical	3	747	junction_2	17.5	8294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	7383	False	NA	NA	False	ATTAAA	-19	NA	83086020	83086920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83086185_83086294_83086408_83086502
ENSMUST00000113952.10	chr2	+	2890	14	FSM	ENSMUSG00000026917.16	ENSMUST00000113952.10	2890	14	0	0	0	0	multi-exon	FALSE	canonical	3	1324	junction_4	114.959164347413	1425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTCCATATAAGTTTG	NA	False	NA	33	True	AATAAA	-19	NA	27405168	27426547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_27405293_27408640_27408805_27409360_27409470_27409754_27409829_27410338_27410429_27410584_27410675_27410839_27410924_27415117_27415174_27418285_27418333_27421650_27421727_27423004_27423039_27423348_27423424_27423779_27423868_27424768
ENSMUST00000113980.4	chr6	+	1945	10	FSM	ENSMUSG00000030041.10	ENSMUST00000113980.4	1945	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	176.542723818721	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTGTTCAGAGCATTCC	NA	False	NA	12	True	ATTAAA	-17	NA	82923882	83007164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982486_82982650_82983298_82983441_83003178_83003386_83005372_83005514_83006750
ENSMUST00000114011.11	chr17	+	840	5	FSM	ENSMUSG00000007050.18	ENSMUST00000114011.11	840	5	0	0	0	0	multi-exon	FALSE	canonical	3	1192	junction_1	217.150869213089	2347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	-6	True	NA	26	True	AATAAA	-20	NA	35200855	35204867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35201062_35201595_35201664_35204084_35204116_35204224_35204285_35204392
ENSMUST00000114016.10	chrX	-	1725	3	FSM	ENSMUSG00000046942.18	ENSMUST00000114016.10	1725	3	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	42	2194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	0	True	AATAAA	-22	NA	78679188	78666836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_78668390_78671446_78671527_78679096
ENSMUST00000114023.3	chr16	-	1154	10	FSM	ENSMUSG00000058240.15	ENSMUST00000114023.3	1154	10	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	469.417790170329	842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTTTTTCTCTTTTTT	9102	False	NA	NA	False	AATAAA	-24	NA	91525589	91491225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91491554_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUST00000114047.10	chr5	-	2762	11	FSM	ENSMUSG00000039753.17	ENSMUST00000114047.10	2762	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	169.180495329692	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCAATATCTTTTGTGT	2824	False	NA	-9	True	AATAAA	-20	NA	43978980	43901965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_43902718_43908203_43908353_43915563_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43978882
ENSMUST00000114049.2	chr6	-	690	2	FSM	ENSMUSG00000079523.9	ENSMUST00000114049.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	3	26814	junction_1	0	45124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGGCGTGGTCTGAAT	NA	False	NA	-17	True	AATAAA	-14	NA	72935285	72934335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72934636_72934895
ENSMUST00000114050.8	chr6	-	570	3	FSM	ENSMUSG00000079523.9	ENSMUST00000114050.8	570	3	0	0	0	0	multi-exon	FALSE	canonical	3	26814	junction_1	200.5	100794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGTGGTCTGAATTTTTTA	NA	False	NA	-11	True	AATAAA	-20	NA	72935471	72934329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72934636_72934895_72935008_72935319
ENSMUST00000114069.8	chr6	-	2164	13	FSM	ENSMUSG00000056698.12	ENSMUST00000114069.8	2164	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_12	16.532795690183	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTTCCAAGATGAAGTT	NA	False	NA	1	True	AATAAA	-23	NA	72575325	72542904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72573418_72573450_72575304
ENSMUST00000114070.10	chrX	+	632	5	FSM	ENSMUSG00000031197.12	ENSMUST00000114070.10	632	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	774.241685457455	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTCCTTATTAGAAACTT	NA	False	NA	NA	False	AATAAA	-15	NA	74557904	74567652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74567441
ENSMUST00000114079.9	chr1	-	2030	4	FSM	ENSMUSG00000025956.11	ENSMUST00000114079.9	2030	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	6.34209919681348	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCAGTGTTGTCTTCTG	NA	False	NA	0	True	ATTAAA	-20	NA	64656401	64645631	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_64647297_64654256_64654369_64655431_64655604_64656320
ENSMUST00000114093.2	chr2	+	1638	11	FSM	ENSMUSG00000026926.15	ENSMUST00000114093.2	1638	11	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_8	100.774054200474	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGCCTGGCTGTCTTTT	653	False	NA	NA	False	NA	NA	NA	26279359	26283953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529
ENSMUST00000114106.8	chr5	+	1504	9	FSM	ENSMUSG00000067367.10	ENSMUST00000114106.8	1504	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	758.80744222431	3146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTCTGTATCTATGATAA	NA	False	NA	13	True	AATAAA	-14	NA	38378021	38391640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_38378139_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
ENSMUST00000114143.10	chrX	-	1899	9	FSM	ENSMUSG00000031399.16	ENSMUST00000114143.10	1899	9	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	16.2322017915007	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAGAGTCAAGGGTGGTG	NA	False	NA	-6	True	AATAAA	-43	NA	73436878	73428324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_73429042_73430027_73430155_73430237_73430323_73430639_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280
ENSMUST00000114147.2	chrX	-	1708	2	FSM	ENSMUSG00000032806.14	ENSMUST00000114147.2	1708	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCTCGGGTCCCTTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	73414617	73412822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_73414047_73414133
ENSMUST00000114151.10	chr6	+	2518	13	FSM	ENSMUSG00000052337.16	ENSMUST00000114151.10	2518	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_9	563.839288322085	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTCTATCCCTTTTCAA	NA	False	NA	12	True	AATAAA	-19	NA	71808393	71852241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71845563_71845788_71848410_71848543_71849777_71849908_71851300
ENSMUST00000114152.2	chrX	-	746	3	FSM	ENSMUSG00000015289.5	ENSMUST00000114152.2	746	3	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	662	16793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCAGCCTCTAAATTTT	4536	False	NA	-19	True	AATAAA	-29	NA	73397181	73395767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_73396105_73396450_73396609_73396930
ENSMUST00000114160.2	chrX	+	1383	13	FSM	ENSMUSG00000001962.9	ENSMUST00000114160.2	1383	13	0	0	0	0	multi-exon	FALSE	canonical	3	663	junction_3	69.864700592566	3422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAAGAACCTGCGCTTTA	199	False	NA	NA	False	AATAAA	-33	NA	73356638	73363755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035_73361113_73361242_73361310_73361747_73361810_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
ENSMUST00000114171.10	chrX	+	2157	10	FSM	ENSMUSG00000019087.14	ENSMUST00000114171.10	2157	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	217.728565868289	4905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGGGCTTCGTGTCACT	NA	False	NA	14	True	AATAAA	-19	NA	73340768	73348295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347336
ENSMUST00000114180.11	chrX	+	1786	10	FSM	ENSMUSG00000009995.18	ENSMUST00000114180.11	1786	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_6	91.4165611600053	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTCTGTCTTCTGTGTA	NA	False	NA	7	True	AATAAA	-20	NA	73326367	73333754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332053_73332120_73332267_73332321_73332710_73332789_73332904
ENSMUST00000114184.8	chr16	+	2202	10	FSM	ENSMUSG00000008976.17	ENSMUST00000114184.8	2202	10	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_1	83.9617784882715	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATGATATCATTCTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	84631812	84658203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_84631912_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
ENSMUST00000114193.8	chr16	-	680	4	FSM	ENSMUSG00000022890.14	ENSMUST00000114193.8	680	4	0	0	0	0	multi-exon	FALSE	canonical	1	103	junction_3	3139.53779329945	4446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTTTAAATTCTTTGGT	NA	False	NA	3	True	AATAAA	-23	NA	84631127	84624753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_84624884_84625312_84625438_84628216_84628396_84630881
ENSMUST00000114195.8	chr16	+	4370	10	FSM	ENSMUSG00000053062.17	ENSMUST00000114195.8	4370	10	0	0	0	0	multi-exon	FALSE	canonical	3	3263	junction_7	414.866630361679	19301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTTATGGTCTATGAAT	NA	False	NA	17	True	AATAAA	-20	NA	84571010	84622816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613262_84615647_84615664_84618147_84618191_84619674
ENSMUST00000114218.2	chr16	-	1271	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114218.2	1271	5	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_4	107.072405408677	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCAGGGTTACTCAATCA	3243	False	NA	-4	True	AATAAA	-13	NA	78373545	78341848	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373311
ENSMUST00000114219.8	chr16	-	1576	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114219.8	1576	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	120.034370077907	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTGCTATTTTGGGTAT	3243	False	NA	NA	False	TATAAA	-12	NA	78373545	78341576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373278
ENSMUST00000114220.9	chr16	-	2644	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114220.9	2644	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	113.984648089118	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATACT	3253	False	NA	NA	False	NA	NA	NA	78373535	78340430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373346
ENSMUST00000114226.8	chr6	+	1155	5	FSM	ENSMUSG00000036402.14	ENSMUST00000114226.8	1155	5	0	0	0	0	multi-exon	FALSE	canonical	2	34	junction_3	135.972423674803	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCCTTTGATGGGGTCT	NA	False	NA	17	True	AATAAA	-33	NA	66873417	66995273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_66873512_66891436_66891495_66920808_66920867_66992708_66992828_66994447
ENSMUST00000114227.8	chr6	+	1125	5	FSM	ENSMUSG00000036402.14	ENSMUST00000114227.8	1125	5	0	0	0	0	multi-exon	FALSE	canonical	2	75	junction_1	125.742544510599	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTAAGGCTAAAACTGAAAG	NA	False	NA	1	True	AATAAA	-17	NA	66873414	66995257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_66873500_66891436_66891495_66920808_66920862_66992708_66992828_66994447
ENSMUST00000114228.8	chr6	+	748	4	FSM	ENSMUSG00000036402.14	ENSMUST00000114228.8	748	4	0	0	0	0	multi-exon	FALSE	canonical	2	250	junction_2	52.550504807809	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCACTTCAGTCAAAAACC	NA	False	NA	3	True	ATTAAA	-9	NA	66873406	66994913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_66873512_66891436_66891495_66992708_66992828_66994447
ENSMUST00000114232.4	chr17	+	1404	6	FSM	ENSMUSG00000079547.5	ENSMUST00000114232.4	1404	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	6.61513416341649	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGTTTGTCCTGGGTTT	NA	False	NA	NA	False	AATAAA	-21	NA	34372045	34379204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34372428_34374406_34374689_34376219_34376505_34378317_34378435_34378602_34378639_34378902
ENSMUST00000114259.3	chr2	-	775	7	FSM	ENSMUSG00000015090.14	ENSMUST00000114259.3	775	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.71558280160133	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCTTTTGTCTGTCTG	5892	False	NA	1	True	AATAAA	-19	NA	25359761	25356720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25356844_25357331_25357358_25357829_25357932_25358083_25358201_25358844_25358922_25358999_25359140_25359571
ENSMUST00000114261.9	chr2	-	981	7	FSM	ENSMUSG00000047617.12	ENSMUST00000114261.9	981	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_6	3.94405318873308	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGTTGTGAAGATTGGC	5236	False	NA	-4	True	AATAAA	-32	NA	25351106	25349493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25349714_25349786_25349872_25350020_25350087_25350178_25350370_25350456_25350507_25350666_25350728_25350798
ENSMUST00000114293.9	chr2	+	1600	6	FSM	ENSMUSG00000026955.14	ENSMUST00000114293.9	1600	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	40.9536323175369	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCTGTATTTCTCATAA	6666	False	NA	6	True	AGTAAA	-15	NA	25262341	25266815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_25263011_25264963_25265077_25265696_25265844_25265979_25266088_25266175_25266287_25266363
ENSMUST00000114294.8	chr6	+	2178	16	FSM	ENSMUSG00000029802.14	ENSMUST00000114294.8	2178	16	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	24.9849732617205	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACATTATCTGTCACAT	NA	False	NA	76	True	NA	NA	NA	58617548	58669496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_58617613_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
ENSMUST00000114309.8	chr1	+	2010	5	FSM	ENSMUSG00000026031.16	ENSMUST00000114309.8	2010	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.6393596310755	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTTGTGCATTTGCTTT	3046	False	NA	NA	False	NA	NA	NA	58752452	58772386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_58752819_58765464_58765892_58768214_58768321_58770310_58770447_58771411
ENSMUST00000114329.8	chr5	-	1906	13	FSM	ENSMUSG00000001082.13	ENSMUST00000114329.8	1906	13	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_12	91.0092715057098	1306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCCTTTCCGTCTTACT	NA	False	NA	-7	True	AATAAA	-17	NA	34794536	34790992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794131_34794270
ENSMUST00000114331.10	chr5	-	1754	13	FSM	ENSMUSG00000001082.13	ENSMUST00000114331.10	1754	13	0	0	0	0	multi-exon	TRUE	canonical	3	36	junction_12	99.4937183946806	1018	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTCCGTCTTACTATT	NA	False	NA	-4	True	AATAAA	-20	NA	34794556	34790989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794442
ENSMUST00000114348.8	chr1	-	1033	7	FSM	ENSMUSG00000026035.16	ENSMUST00000114348.8	1033	7	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_6	35.853482707015	1107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTGTCCTTTTTTTTA	NA	False	NA	1	True	AATAGA	-28	NA	58484593	58470152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484304
ENSMUST00000114349.9	chr2	-	2336	14	FSM	ENSMUSG00000006471.19	ENSMUST00000114349.9	2336	14	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_3	18.4333117547694	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTAGCCGCTCACTTCTC	NA	False	NA	-6	True	CATAAA	-16	NA	25145421	25137240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25137867_25137971_25138067_25138133_25138253_25138347_25138498_25138643_25138759_25138916_25139025_25139111_25139333_25139416_25139539_25139805_25140016_25140107_25140210_25140291_25140391_25141732_25141831_25144875_25144954_25145228
ENSMUST00000114371.5	chr16	-	1150	10	FSM	ENSMUSG00000022748.9	ENSMUST00000114371.5	1150	10	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_5	24.152805731247	1879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACAGTTTCTCTTTCCCCT	NA	False	NA	-9	True	AATAAA	-32	NA	57427209	57122362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_57122646_57124042_57124132_57127188_57127277_57127731_57127793_57131615_57131719_57133020_57133081_57136524_57136655_57138268_57138344_57143826_57143907_57427028
ENSMUST00000114379.8	chrX	-	1318	11	FSM	ENSMUSG00000031387.15	ENSMUST00000114379.8	1318	11	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_8	509.144390129166	10909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	72974398	72965726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973834_72973869_72974013_72974124_72974319
ENSMUST00000114383.8	chr5	+	511	4	FSM	ENSMUSG00000070858.13	ENSMUST00000114383.8	511	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	4.98887651569859	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGTCCTGTATTTTG	NA	False	NA	5	True	AATAAA	-13	NA	34140813	34142353	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_34140984_34141100_34141241_34141395_34141485_34142241
ENSMUST00000114387.8	chrX	-	979	8	FSM	ENSMUSG00000031388.15	ENSMUST00000114387.8	979	8	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	343.561063104701	5664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGAATGTGCATAGTGG	NA	False	NA	-15	True	AATAAA	-24	NA	72965494	72960492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72960889_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUST00000114389.10	chrX	-	1031	8	FSM	ENSMUSG00000031388.15	ENSMUST00000114389.10	1031	8	0	0	0	0	multi-exon	FALSE	canonical	3	794	junction_1	110.126457923125	8140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGTGGGGTATGCTTTTT	NA	False	NA	-3	True	AATAAA	-36	NA	72965530	72960480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72960893_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUST00000114391.10	chrX	-	834	7	FSM	ENSMUSG00000031388.15	ENSMUST00000114391.10	834	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	477.944789931036	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGGAAATTTGTGAATGT	NA	False	NA	-24	True	AATAAA	-15	NA	72965490	72960501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72960802_72961448_72961534_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
ENSMUST00000114410.10	chr1	-	2512	7	FSM	ENSMUSG00000054770.17	ENSMUST00000114410.10	2512	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	14.3372087784044	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGTGACTACTTACT	NA	False	NA	1	True	AATAAA	-25	NA	58009287	57994406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004487_58004700_58006655_58006883_58009179
ENSMUST00000114426.10	chr5	+	2187	15	FSM	ENSMUSG00000037313.17	ENSMUST00000114426.10	2187	15	0	0	0	0	multi-exon	FALSE	canonical	3	792	junction_7	83.9525193797308	887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	32	True	ACTAAA	-20	NA	33815929	33829542	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
ENSMUST00000114437.9	chr9	+	3430	15	FSM	ENSMUSG00000032058.15	ENSMUST00000114437.9	3430	15	0	0	0	0	multi-exon	FALSE	canonical	3	496	junction_13	51.8120622627431	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTAATTTCACAGTTTC	-13	True	NA	NA	False	NA	NA	NA	50768236	50792731	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
ENSMUST00000114444.9	chr16	-	2295	5	FSM	ENSMUSG00000071533.12	ENSMUST00000114444.9	2295	5	0	0	0	0	multi-exon	FALSE	canonical	3	1624	junction_1	369.138439477657	4028	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	55850102	55835868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844802_55849965
ENSMUST00000114445.8	chr6	+	1585	5	FSM	ENSMUSG00000029836.16	ENSMUST00000114445.8	1585	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1009.62873745749	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	False	NA	-1	True	AATAAA	-19	NA	51447645	51460684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_51447715_51448795_51448849_51452210_51452354_51458703_51458799_51459459
ENSMUST00000114446.8	chr6	+	1719	6	FSM	ENSMUSG00000029836.16	ENSMUST00000114446.8	1719	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	927.333381260483	4227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	False	NA	-1	True	AATAAA	-19	NA	51447674	51460684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_51447715_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
ENSMUST00000114459.8	chr6	-	1728	12	FSM	ENSMUSG00000004980.17	ENSMUST00000114459.8	1728	12	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_11	2433.70552759395	25054	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446806	51439739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
ENSMUST00000114472.8	chrX	-	1532	12	FSM	ENSMUSG00000002012.14	ENSMUST00000114472.8	1532	12	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_11	13.5176652099123	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTCTGGTGCTGAACTGG	NA	False	NA	-3	True	AATAAA	-14	NA	72703723	72699600	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703624
ENSMUST00000114473.8	chrX	-	1492	12	FSM	ENSMUSG00000002012.14	ENSMUST00000114473.8	1492	12	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_11	19.8644164606543	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGGTGCTGAACTGGG	NA	False	NA	-2	True	AATAAA	-15	NA	72703330	72699599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703272
ENSMUST00000114474.8	chr9	+	1689	4	FSM	ENSMUSG00000032068.15	ENSMUST00000114474.8	1689	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	3.39934634239519	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTTTCTATACCGTCCA	NA	False	NA	NA	False	AATAAA	-17	NA	50405824	50416782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_50406047_50410394_50410600_50412372_50412429_50415576
ENSMUST00000114503.9	chrX	-	1656	9	FSM	ENSMUSG00000067764.12	ENSMUST00000114503.9	1656	9	0	0	0	0	multi-exon	TRUE	canonical	3	126	junction_7	127.059963698248	1372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72336582	72326501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72327390_72327485_72327591_72328811_72328911_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336481
ENSMUST00000114517.2	chrX	-	1015	2	FSM	ENSMUSG00000079566.2	ENSMUST00000114517.2	1015	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAAAGTTGAAGTTGTA	NA	False	NA	NA	False	AATAAA	-14	NA	72220595	72218907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72219726_72220398
ENSMUST00000114518.9	chrX	+	1652	9	FSM	ENSMUSG00000072479.11	ENSMUST00000114518.9	1652	9	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_8	146.338167868127	1261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72192401	72202478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_72192503_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72200175_72201393_72201499_72201594
ENSMUST00000114521.8	chrX	-	1474	8	FSM	ENSMUSG00000058328.14	ENSMUST00000114521.8	1474	8	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_7	121.461844180947	1125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72161308	72151240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161284
ENSMUST00000114524.9	chrX	-	1584	9	FSM	ENSMUSG00000057836.13	ENSMUST00000114524.9	1584	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	496.010190797528	6982	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	-5	True	AATAAA	-18	NA	72140623	72129898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138551_72138689_72140586
ENSMUST00000114530.8	chrX	-	1220	9	FSM	ENSMUSG00000031362.18	ENSMUST00000114530.8	1220	9	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	102.200477004758	1377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286736	72277684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285802_72286183_72286267_72286581
ENSMUST00000114531.8	chrX	-	1104	9	FSM	ENSMUSG00000031362.18	ENSMUST00000114531.8	1104	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_7	121.935433734415	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286633	72277684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285789_72286183_72286267_72286581
ENSMUST00000114533.9	chr5	+	2424	13	FSM	ENSMUSG00000029141.17	ENSMUST00000114533.9	2424	13	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	19.394300422776	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACTGAGGTGATGATCA	NA	False	NA	6	True	AGTAAA	-16	NA	31684338	31711381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31705954_31706026_31708056_31708127_31711082
ENSMUST00000114540.4	chrX	-	2287	2	FSM	ENSMUSG00000050424.10	ENSMUST00000114540.4	2287	2	0	0	0	0	multi-exon	FALSE	canonical	1	35	junction_1	0	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTTTCTGGCGATGTTC	NA	False	NA	0	True	AATAAA	-21	NA	72080709	72077586	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72077934_72078769
ENSMUST00000114551.10	chrX	-	1286	5	FSM	ENSMUSG00000031347.13	ENSMUST00000114551.10	1286	5	0	0	0	0	multi-exon	TRUE	canonical	3	590	junction_4	36.4862987983161	3384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTTGTGGATTTTTACA	NA	False	NA	-2	True	CATAAA	-17	NA	71962017	71957137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293_71960453_71961919
ENSMUST00000114582.9	chrX	+	1743	5	FSM	ENSMUSG00000015217.12	ENSMUST00000114582.9	1743	5	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	303.596360320739	3339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599533	70604282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_70599797_70601658_70601814_70602038_70602179_70602703_70602879_70603272
ENSMUST00000114590.8	chr5	-	2228	4	FSM	ENSMUSG00000043059.17	ENSMUST00000114590.8	2228	4	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_2	5.79271573232759	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGTCTCTGCTGAATTG	NA	False	NA	-17	True	AATAAA	-16	NA	31359647	31356324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31357492_31357578_31358167_31358926_31359083_31359330
ENSMUST00000114603.8	chr5	-	1966	12	FSM	ENSMUSG00000029145.13	ENSMUST00000114603.8	1966	12	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	55.8517814183514	2263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCCATGACTCTGCTGCC	NA	False	NA	-10	True	AATAAA	-14	NA	31350358	31344911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925
ENSMUST00000114618.8	chr6	-	2775	20	FSM	ENSMUSG00000029687.17	ENSMUST00000114618.8	2775	20	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_12	268.321921839443	3542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTGTTAGTATTGCATG	NA	False	NA	NA	False	AATAAA	-26	NA	47571964	47507072	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528650_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553496_47553599_47554477_47554602_47571827
ENSMUST00000114647.8	chrX	+	679	4	FSM	ENSMUSG00000062170.13	ENSMUST00000114647.8	679	4	0	0	0	0	multi-exon	FALSE	canonical	3	331	junction_1	201.191451110627	9824	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805486	67848173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_67805838_67815650_67815748_67847210_67847300_67848031
ENSMUST00000114725.3	chrX	+	2156	17	FSM	ENSMUSG00000079584.3	ENSMUST00000114725.3	2156	17	0	0	0	0	multi-exon	FALSE	canonical	1	199	junction_7	106.775300719548	2516	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAACCTCCCTGTCTGGC	NA	False	NA	9	True	TATAAA	-2	NA	56454513	56534127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_56454734_56459619_56459688_56461126_56461221_56463018_56463147_56463508_56463639_56467202_56467331_56468624_56468737_56478568_56478649_56481769_56481879_56482743_56482877_56484923_56485044_56485247_56485306_56508440_56508601_56509625_56509775_56513777_56513890_56517713_56517886_56533944
ENSMUST00000114777.10	chr18	+	3060	14	FSM	ENSMUSG00000025423.17	ENSMUST00000114777.10	3060	14	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_1	299.077338556217	796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATCATAATTCTCATCAAT	7899	False	NA	NA	False	CATAAA	-17	NA	77152903	77241496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_77153116_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
ENSMUST00000114786.8	chr5	+	2048	16	FSM	ENSMUSG00000059447.14	ENSMUST00000114786.8	2048	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	146.097988426337	1575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCGTAGTCTCGTTATTA	NA	False	NA	6	True	AATAAA	-21	NA	30360269	30389587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_30360381_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
ENSMUST00000114797.2	chr6	-	500	3	FSM	ENSMUSG00000029918.10	ENSMUST00000114797.2	500	3	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	481	1145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTGTTTAAGATTGGAA	NA	False	NA	-18	True	AATAAA	-12	NA	39787819	39779125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_39779479_39782420_39782546_39787797
ENSMUST00000114810.2	chrX	-	984	8	FSM	ENSMUSG00000054626.12	ENSMUST00000114810.2	984	8	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_7	54.1238187409392	1175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGTGGCAAATAGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	52799663	52785714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798188_52799598
ENSMUST00000114822.2	chr6	-	751	3	FSM	ENSMUSG00000029922.16	ENSMUST00000114822.2	751	3	0	0	0	0	multi-exon	FALSE	canonical	3	4055	junction_2	144.5	3941	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCCGAATGCTGTCCC	NA	False	NA	0	True	AATAAA	-25	NA	39397232	39382472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_39382895_39387021_39387151_39397032
ENSMUST00000114829.9	chr16	-	1030	6	FSM	ENSMUSG00000022838.15	ENSMUST00000114829.9	1030	6	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_4	1.32664991614216	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGGTATTCTCATGTG	8200	False	NA	NA	False	AATAAA	-23	NA	36648623	36614105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_36614289_36620948_36621207_36628376_36628523_36630833_36630971_36645019_36645115_36648412
ENSMUST00000114839.8	chr5	+	1605	8	FSM	ENSMUSG00000029131.15	ENSMUST00000114839.8	1605	8	0	0	0	0	multi-exon	FALSE	canonical	3	1788	junction_5	99.4337026590572	5081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTCTTGTGTCTGTGTG	4546	False	NA	42	True	AATAAA	-42	NA	29940937	29972101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322
ENSMUST00000114840.2	chr9	+	1735	4	FSM	ENSMUSG00000032011.6	ENSMUST00000114840.2	1735	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	3.74165738677394	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTGTCTGTCTCTTCT	NA	False	NA	34	True	AATAAA	-20	NA	43954680	43959876	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_43954774_43957253_43957316_43957910_43958250_43958635
ENSMUST00000114848.8	chr17	-	2207	6	FSM	ENSMUSG00000024218.14	ENSMUST00000114848.8	2207	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	61.2483469164679	1570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTTCTCTGTGTTGCCCT	NA	False	NA	-3	True	AATAAA	-25	NA	28128216	28120095	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474_28127218_28127754
ENSMUST00000114881.9	chr17	-	644	6	FSM	ENSMUSG00000052146.17	ENSMUST00000114881.9	644	6	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	2469.22413725445	63316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTCCACTTGTGTATGTT	NA	False	NA	NA	False	AATAAA	-14	NA	27855643	27849397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853299_27853450_27855538
ENSMUST00000114888.11	chr17	+	1631	5	FSM	ENSMUSG00000046711.17	ENSMUST00000114888.11	1631	5	0	0	0	0	multi-exon	FALSE	canonical	3	2165	junction_2	1373.00680533638	14496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCTCTGGTGTAAGGAG	NA	False	NA	NA	False	AATAAA	-21	NA	27775558	27782642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_27775686_27778506_27778645_27779901_27779986_27780434_27780486_27781411
ENSMUST00000114897.9	chr2	-	1166	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114897.9	1166	10	0	0	0	0	multi-exon	FALSE	canonical	3	3857	junction_2	289.314942238504	12086	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9504	False	NA	-2	True	AATAAA	-19	NA	10085321	10060840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
ENSMUST00000114918.9	chrX	-	3226	16	FSM	ENSMUSG00000031109.17	ENSMUST00000114918.9	3226	16	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	10.7695042700313	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACAGGGACTCCTCTGG	NA	False	NA	45	True	NA	NA	NA	48377119	48099334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_48100512_48102009_48102058_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375721_48375782_48376977
ENSMUST00000114925.10	chr1	+	1094	6	FSM	ENSMUSG00000026111.16	ENSMUST00000114925.10	1094	6	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_1	76.7739539166767	2065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGTGACTGTTTATTT	NA	False	NA	NA	False	AATAAA	-13	NA	37469219	37478065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_37469364_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
ENSMUST00000114935.9	chr17	-	662	6	FSM	ENSMUSG00000024194.17	ENSMUST00000114935.9	662	6	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_5	278.895392575783	4249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9278	False	NA	-18	True	AATAAA	-17	NA	27158517	27156946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158424
ENSMUST00000114936.8	chrX	+	1582	11	FSM	ENSMUSG00000031105.17	ENSMUST00000114936.8	1582	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	43.3798340245787	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	14	True	ATTAAA	-17	NA	47712641	47751171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_47712706_47712838_47713084_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
ENSMUST00000114945.9	chrX	-	2221	16	FSM	ENSMUSG00000036932.15	ENSMUST00000114945.9	2221	16	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_15	394.039704711199	579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602436	47563820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47592459_47592591_47602112
ENSMUST00000114959.9	chr18	+	1496	9	FSM	ENSMUSG00000079608.11	ENSMUST00000114959.9	1496	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.87082869338697	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGGGTTATAGTATACA	NA	False	NA	NA	False	NA	NA	NA	70605524	70634137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_70605640_70606272_70606426_70607355_70607437_70609170_70609265_70609452_70609503_70616482_70616610_70629184_70629303_70631618_70631713_70633473
ENSMUST00000114975.8	chr5	-	2205	12	FSM	ENSMUSG00000028944.15	ENSMUST00000114975.8	2205	12	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	21.3386701313649	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTTTTTATGTATATGA	NA	False	NA	-9	True	AATAAA	-19	NA	25113467	25067745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320
ENSMUST00000114981.3	chr1	-	1659	10	FSM	ENSMUSG00000046337.18	ENSMUST00000114981.3	1659	10	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_7	27.7328525599353	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACGCC	NA	False	NA	NA	False	AATACA	-27	NA	36722264	36639056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
ENSMUST00000114997.3	chr6	+	1207	8	FSM	ENSMUSG00000029848.12	ENSMUST00000114997.3	1207	8	0	0	0	0	multi-exon	FALSE	canonical	1	14	junction_2	25.1931315550691	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTTGGTGTCCTGGCA	NA	False	NA	11	True	TATAAA	-16	NA	34897944	34916277	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_34897990_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
ENSMUST00000114999.8	chr6	+	1455	9	FSM	ENSMUSG00000029848.12	ENSMUST00000114999.8	1455	9	0	0	0	0	multi-exon	FALSE	canonical	1	14	junction_3	19.2272592950738	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTTGGTGTCCTGGCA	NA	False	NA	11	True	TATAAA	-16	NA	34897894	34916277	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_34897990_34904653_34904852_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
ENSMUST00000115006.2	chr6	-	1501	4	FSM	ENSMUSG00000046806.14	ENSMUST00000115006.2	1501	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	8.9566858950296	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTGTGACGACTATTC	7648	False	NA	-20	True	NA	NA	NA	34854944	34850629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_34851631_34852390_34852548_34853473_34853707_34854834
ENSMUST00000115010.9	chr2	+	847	5	FSM	ENSMUSG00000026668.11	ENSMUST00000115010.9	847	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.82915619758885	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATCAACACTGTGTATCAT	4781	False	NA	NA	False	AATAAA	-7	NA	4980961	4990551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_4981121_4981465_4981532_4981620_4981717_4986048_4986148_4990124
ENSMUST00000115011.8	chr1	-	2290	9	FSM	ENSMUSG00000001143.14	ENSMUST00000115011.8	2290	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	79.4618619213016	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTCTGGCTCAGTGGCC	NA	False	NA	-3	True	CATAAA	-21	NA	36484352	36462266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_36463585_36463918_36464039_36467182_36467298_36467380_36467543_36468503_36468537_36477830_36477914_36478689_36478808_36482571_36482691_36484130
ENSMUST00000115021.8	chr6	+	4041	12	FSM	ENSMUSG00000029761.17	ENSMUST00000115021.8	4041	12	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	28.0630930241598	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCGTGCATTCTTTG	1257	False	NA	32	True	AATAAA	-20	NA	34686376	34752408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_34686633_34718723_34718871_34722553_34722951_34730377_34730524_34732568_34732834_34734918_34735060_34739044_34739089_34739185_34739265_34741890_34742029_34743037_34743134_34747982_34748064_34750157
ENSMUST00000115075.2	chr16	+	518	4	FSM	ENSMUSG00000060636.15	ENSMUST00000115075.2	518	4	0	0	0	0	multi-exon	FALSE	canonical	3	8092	junction_3	1051.6733755729	71949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTGTATTTTTTTTTCA	NA	False	NA	1	True	AATAAA	-16	NA	32877387	32880526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32877549_32877759_32877913_32879048_32879194_32880467
ENSMUST00000115076.8	chr16	+	519	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115076.8	519	5	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_1	3846.56847072816	176129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTGTCCTAAATTGAGT	NA	False	NA	20	True	AATAAA	-35	NA	32877175	32880545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32877276_32877505_32877549_32877759_32877913_32879048_32879194_32880467
ENSMUST00000115078.8	chr16	+	500	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115078.8	500	5	0	0	0	0	multi-exon	FALSE	canonical	3	927	junction_1	3609.33805392346	153022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCACATCTGTCC	NA	False	NA	10	True	AATAAA	-25	NA	32876896	32880535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32876988_32877505_32877549_32877759_32877913_32879048_32879194_32880467
ENSMUST00000115079.8	chr16	+	510	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115079.8	510	5	0	0	0	0	multi-exon	FALSE	canonical	3	3184	junction_1	2675.04705566089	300425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGTCCTAAATTGAGTT	NA	False	NA	21	True	AATAAA	-36	NA	32876835	32880546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32876926_32877505_32877549_32877759_32877913_32879048_32879194_32880467
ENSMUST00000115091.2	chr6	-	1363	6	FSM	ENSMUSG00000053768.14	ENSMUST00000115091.2	1363	6	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	31.2089730686545	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGAATTATTAGTTTCTG	NA	False	NA	-12	True	AATAAA	-16	NA	33037152	32828377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
ENSMUST00000115101.4	chr5	+	1624	6	FSM	ENSMUSG00000048439.16	ENSMUST00000115101.4	1624	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	25.7013618316229	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCAAGGGACTCTTTTGT	5183	False	NA	NA	False	AATAAA	-20	NA	24369997	24387835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_24370202_24372340_24372564_24374293_24374389_24382997_24383085_24386078_24386164_24386905
ENSMUST00000115118.8	chrX	-	3344	23	FSM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	0	0	0	0	multi-exon	FALSE	non_canonical	3	600	junction_22	211.248653964121	562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTCATTTAAAGATACT	NA	False	NA	-28	True	AATAAA	-20	NA	37665073	37622150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37665015
ENSMUST00000115130.3	chr6	-	485	3	FSM	ENSMUSG00000029790.17	ENSMUST00000115130.3	485	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	51	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTATTCCAGACATCTTA	8	True	NA	NA	False	NA	NA	NA	30693699	30679086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_30679444_30680129_30680194_30693635
ENSMUST00000115150.4	chrX	+	763	3	FSM	ENSMUSG00000053909.9	ENSMUST00000115150.4	763	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGTTTGTGTTTGTCA	NA	False	NA	NA	False	AATAAA	-18	NA	37155351	37160568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_37155824_37158275_37158322_37160323
ENSMUST00000115157.8	chr6	-	2273	15	FSM	ENSMUSG00000029782.21	ENSMUST00000115157.8	2273	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_14	253.514963532123	1458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCATCTTGAAAGGTCAA	2	True	NA	-18	True	ATTAAA	-16	NA	30509717	30482413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508842_30509683
ENSMUST00000115160.10	chr6	-	3485	15	FSM	ENSMUSG00000029782.21	ENSMUST00000115160.10	3485	15	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_14	62.8738614129878	1747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGGTGAAATCATTTGAA	NA	False	NA	-9	True	AATAAA	-19	NA	30509782	30481226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
ENSMUST00000115162.2	chrX	-	779	4	FSM	ENSMUSG00000079627.3	ENSMUST00000115162.2	779	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	11.2644968324772	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATACATTTGTTTTGTGC	9229	False	NA	NA	False	AATAAA	-12	NA	36854930	36850649	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_36850876_36852672_36852719_36854261_36854674_36854835
ENSMUST00000115166.3	chrX	-	979	4	FSM	ENSMUSG00000079628.4	ENSMUST00000115166.3	979	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	1.24721912892465	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTCTTTTTGATTA	6368	False	NA	NA	False	AATAAA	-21	NA	36832980	36828152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_36828390_36829677_36829724_36832090_36832497_36832690
ENSMUST00000115169.4	chrX	-	795	4	FSM	ENSMUSG00000079629.6	ENSMUST00000115169.4	795	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	7.03957069398096	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATATATTTGTTTTGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	36825123	36820769	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_36820996_36822809_36822856_36824438_36824851_36825012
ENSMUST00000115190.11	chrX	+	762	4	FSM	ENSMUSG00000079637.11	ENSMUST00000115190.11	762	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	17.9133717900592	414	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36635332	36640032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_36635407_36635568_36635981_36637508_36637555_36639802
ENSMUST00000115191.7	chrX	+	799	4	FSM	ENSMUSG00000079638.9	ENSMUST00000115191.7	799	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	23.6126143312331	1500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36593719	36598459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_36593831_36593992_36594405_36595944_36595991_36598229
ENSMUST00000115195.8	chr5	-	1994	17	FSM	ENSMUSG00000029014.15	ENSMUST00000115195.8	1994	17	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_16	257.325297228527	2891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATTTTCACTTGGAATT	NA	False	NA	-12	True	AATAAA	-15	NA	21990214	21962279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988147_21989986
ENSMUST00000115231.4	chrX	-	612	3	FSM	ENSMUSG00000079641.4	ENSMUST00000115231.4	612	3	0	0	0	0	multi-exon	FALSE	canonical	3	12849	junction_1	35	388836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36349055	36346172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_36346403_36347637_36347742_36348777
ENSMUST00000115233.2	chr16	-	958	5	FSM	ENSMUSG00000047714.15	ENSMUST00000115233.2	958	5	0	0	0	0	multi-exon	FALSE	canonical	3	993	junction_1	34.2746261832277	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTTGCTTTGTTTTTTG	NA	False	NA	73	True	ATTAAA	-38	NA	31093810	31076792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_31077323_31079391_31079487_31080047_31080126_31084122_31084231_31093663
ENSMUST00000115246.9	chr18	+	1484	10	FSM	ENSMUSG00000024576.15	ENSMUST00000115246.9	1484	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	613.012254927549	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTGTATTGTAACTTAT	472	False	NA	25	True	ATTAAA	-16	NA	61688388	61715187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61715106
ENSMUST00000115248.10	chrX	-	3340	7	FSM	ENSMUSG00000006423.16	ENSMUST00000115248.10	3340	7	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	34.0999348321306	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTTGTTTTGATCATTT	NA	False	NA	NA	False	AATAAA	-28	NA	36127899	36112195	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_36114816_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
ENSMUST00000115251.8	chr6	-	3989	23	FSM	ENSMUSG00000012535.15	ENSMUST00000115251.8	3989	23	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	140.778774050425	492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	235	False	NA	-2	True	TTTAAA	-5	NA	29609606	29540825	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554980_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
ENSMUST00000115262.9	chr17	+	886	5	FSM	ENSMUSG00000075705.14	ENSMUST00000115262.9	886	5	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_4	30.3685692781204	1770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTGTTTGTTGTCTCATG	NA	False	NA	19	True	AATAAA	-19	NA	24955615	24961752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24955737_24958472_24958622_24959053_24959169_24960879_24960912_24961283
ENSMUST00000115272.9	chr9	+	2533	14	FSM	ENSMUSG00000001833.18	ENSMUST00000115272.9	2533	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	485.66204432895	3247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTCTTGTATATTCT	NA	False	NA	22	True	AATAAA	-22	NA	25163734	25219867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_25163996_25176597_25176603_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
ENSMUST00000115313.8	chrX	-	3251	9	FSM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	0	0	0	0	multi-exon	TRUE	canonical	3	241	junction_8	283.721694623446	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCGTTACTCCTCAGTTT	NA	False	NA	-8	True	AATAAA	-29	NA	23231321	23085509	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
ENSMUST00000115315.3	chr9	-	1349	5	FSM	ENSMUSG00000001348.16	ENSMUST00000115315.3	1349	5	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_4	98.7734149455206	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	4541	False	NA	-23	True	AATAAA	-17	NA	22041894	22038026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22041818
ENSMUST00000115330.8	chr6	-	3151	18	FSM	ENSMUSG00000029676.16	ENSMUST00000115330.8	3151	18	0	0	0	0	multi-exon	TRUE	canonical	3	94	junction_8	16.939542404853	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACATCTTCCAGATACTT	0	True	NA	NA	False	AATATA	-22	NA	25809225	25743735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25798007_25798055_25800282_25800510_25805873_25805941_25809173
ENSMUST00000115331.10	chr9	+	1983	18	FSM	ENSMUSG00000003402.15	ENSMUST00000115331.10	1983	18	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_11	154.653737577573	1007	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTGGCTGTTTTTTA	NA	False	NA	18	True	AATAAA	-14	NA	21914361	21925516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922893_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
ENSMUST00000115338.8	chr16	-	1279	10	FSM	ENSMUSG00000022881.16	ENSMUST00000115338.8	1279	10	0	0	0	0	multi-exon	FALSE	canonical	2	1237	junction_9	172.55065457732	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAGTGAATATACAAT	NA	False	NA	-34	True	AATAAA	-15	NA	22946467	22932700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
ENSMUST00000115342.10	chrX	+	883	6	FSM	ENSMUSG00000001131.12	ENSMUST00000115342.10	883	6	0	0	0	0	multi-exon	FALSE	canonical	3	578	junction_1	90.9382207875215	4404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATATTTCTGTATAGTGT	NA	False	NA	16	True	AATAAA	-17	NA	20736404	20740972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_20736564_20737272_20737402_20739015_20739096_20739288_20739416_20739606_20739732_20740709
ENSMUST00000115352.10	chr1	-	960	4	FSM	ENSMUSG00000079658.10	ENSMUST00000115352.10	960	4	0	0	0	0	multi-exon	TRUE	canonical	3	1066	junction_3	717.825574603995	12763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTGTGTTTTGTTTATT	NA	False	NA	-2	True	TATAAA	-20	NA	16727266	16712990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727215
ENSMUST00000115371.9	chr17	+	1646	7	FSM	ENSMUSG00000034681.18	ENSMUST00000115371.9	1646	7	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_1	362.779738807019	2200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAGTGCTGGTTTTAC	884	False	NA	NA	False	AATAAA	-18	NA	24633619	24644869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24633709_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUST00000115441.9	chr5	-	2972	10	FSM	ENSMUSG00000040464.16	ENSMUST00000115441.9	2972	10	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_5	43.7924397331066	510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGTTTCTGTTCCTAATG	NA	False	NA	NA	False	GATAAA	-19	NA	5609538	5587453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
ENSMUST00000115467.11	chr6	+	2440	7	FSM	ENSMUSG00000029552.20	ENSMUST00000115467.11	2440	7	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	5.93717104351896	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATTGTCTTTCTATGTC	-34	True	NA	NA	False	AATAAA	-15	NA	17065147	17105822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_17065313_17086135_17086222_17096126_17096380_17097259_17097590_17099702_17099919_17100280_17100440_17104591
ENSMUST00000115490.9	chr17	-	1431	14	FSM	ENSMUSG00000041319.15	ENSMUST00000115490.9	1431	14	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_13	116.170706876108	761	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTTTGCATTTTATTCC	765	False	NA	-22	True	AATAAA	-13	NA	23892845	23887592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892714_23892814
ENSMUST00000115494.3	chr9	-	1010	5	FSM	ENSMUSG00000079681.4	ENSMUST00000115494.3	1010	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	4.5	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATTTTTAATTATGTTTT	921	False	NA	NA	False	AATAAA	-21	NA	20978389	20973688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_20974014_20974189_20974284_20974609_20974693_20977319_20977674_20978235
ENSMUST00000115509.8	chr17	+	2368	4	FSM	ENSMUSG00000023902.19	ENSMUST00000115509.8	2368	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	114.030210422014	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	879	False	NA	28	True	AGTAAA	-12	NA	23819829	23829986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_23819934_23824478_23824939_23827081_23827140_23828240
ENSMUST00000115516.11	chr17	-	2104	6	FSM	ENSMUSG00000062012.15	ENSMUST00000115516.11	2104	6	0	0	0	0	multi-exon	TRUE	canonical	3	79	junction_1	5.98665181883831	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTGGCTCTGTGTGCTTG	4823	False	NA	0	True	ATTAAA	-21	NA	23805206	23794817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_23796086_23799085_23799207_23799744_23799837_23800030_23800245_23804411_23804549_23804934
ENSMUST00000115522.10	chr16	+	1134	3	FSM	ENSMUSG00000115219.3	ENSMUST00000115522.10	1134	3	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_2	23	1981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACTGCTTTATGCTTCTG	5899	False	NA	12	True	NA	NA	NA	20430342	20437761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_20430571_20436375_20436660_20437139
ENSMUST00000115524.8	chrX	+	2022	2	FSM	ENSMUSG00000008035.13	ENSMUST00000115524.8	2022	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	1051	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAACTGGACAAGTGTG	1479	False	NA	NA	False	AATAAA	-15	NA	10583628	10585929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_10583944_10584222
ENSMUST00000115527.8	chr5	+	1491	11	FSM	ENSMUSG00000058503.12	ENSMUST00000115527.8	1491	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	59.9796632201282	712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCATGAGAAAGCCCCCAA	NA	False	NA	NA	False	AATGAA	-22	NA	3593837	3619740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609096_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
ENSMUST00000115529.8	chr1	+	930	8	FSM	ENSMUSG00000025903.15	ENSMUST00000115529.8	930	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_6	273.277312991617	2264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGGTAAGATGTAAGTG	NA	False	NA	NA	False	NA	NA	NA	4878133	4915575	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4911178_4911356_4915185
ENSMUST00000115535.3	chr17	-	2784	6	FSM	ENSMUSG00000033972.10	ENSMUST00000115535.3	2784	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	24.8997991959775	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22580381	22556969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577970_22578420_22578506_22580148
ENSMUST00000115542.8	chr6	-	2016	12	FSM	ENSMUSG00000029752.13	ENSMUST00000115542.8	2016	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	2480.9262599759	18211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	14	True	NA	-9	True	AATAAA	-17	NA	7692871	7675168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7692710
ENSMUST00000115578.10	chr16	+	2078	13	FSM	ENSMUSG00000005262.14	ENSMUST00000115578.10	2078	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	131.578240348978	3706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGTTTGATATGGTAT	NA	False	NA	5	True	AATAAA	-15	NA	18630581	18654006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18630634_18631008_18631168_18633579_18633713_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
ENSMUST00000115594.8	chrX	-	1529	13	FSM	ENSMUSG00000031171.12	ENSMUST00000115594.8	1529	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	84.1872912024137	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGCACGTTGCTTACTT	NA	False	NA	-14	True	AATAAA	-21	NA	8118549	8106658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_8107070_8111298_8111341_8111522_8111670_8111790_8111889_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
ENSMUST00000115595.8	chrX	-	1656	13	FSM	ENSMUSG00000031171.12	ENSMUST00000115595.8	1656	13	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_4	23.6231995198694	681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGCACGTTGCTTACTT	NA	False	NA	-14	True	AATAAA	-21	NA	8118634	8106658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_8107070_8111298_8111341_8111522_8111712_8111790_8111889_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
ENSMUST00000115604.8	chr16	+	1235	11	FSM	ENSMUSG00000075704.18	ENSMUST00000115604.8	1235	11	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_9	21.8229237271269	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGGTGCTGTCATTTA	NA	False	NA	NA	False	NA	NA	NA	18245187	18275218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773
ENSMUST00000115606.9	chr16	+	1905	18	FSM	ENSMUSG00000075704.18	ENSMUST00000115606.9	1905	18	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_11	21.0007414599702	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGCGTGTGCTGTCCCC	NA	False	NA	NA	False	AATAAA	-21	NA	18245166	18297823	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773_18274949_18287499_18287637_18290903_18291000_18291543_18291637_18293431_18293504_18294271_18294370_18296400_18296608_18297607
ENSMUST00000115615.9	chrX	-	1183	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115615.9	1183	7	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_1	305.254766092558	8099	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGATAATGCTTTTTC	6535	False	NA	-9	True	ATTAAA	-23	NA	8011962	8008599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_8009195_8009485_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUST00000115616.8	chrX	-	1225	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115616.8	1225	7	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_2	255.122192945524	9004	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAATCAATACTGATAATG	6485	False	NA	-16	True	ATTAAA	-16	NA	8012012	8008606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_8009195_8009489_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUST00000115617.10	chrX	-	1152	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115617.10	1152	7	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_1	339.486213105759	6787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAATCAATACTGATAATG	6562	False	NA	-16	True	ATTAAA	-16	NA	8011935	8008606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_8009195_8009485_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUST00000115621.9	chrX	-	1338	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115621.9	1338	7	0	0	0	0	multi-exon	FALSE	canonical	3	764	junction_2	192.247597875471	10212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATAATGCTTTTTCCT	6378	False	NA	-7	True	ATTAAA	-25	NA	8012119	8008597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_8009195_8009489_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
ENSMUST00000115628.10	chr16	-	1622	9	FSM	ENSMUSG00000013539.15	ENSMUST00000115628.10	1622	9	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	57.8273291792038	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGAGTGTTGGCTTTTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	18161906	18118690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18161758
ENSMUST00000115640.8	chr16	+	2367	12	FSM	ENSMUSG00000022721.20	ENSMUST00000115640.8	2367	12	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	22.0168980933485	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	269	False	NA	8	True	AATAAA	-22	NA	18066746	18071366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
ENSMUST00000115642.8	chrX	-	4069	29	FSM	ENSMUSG00000031161.16	ENSMUST00000115642.8	4069	29	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_28	46.7627942767691	122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGTGCTTTTTTTTTTTA	NA	False	NA	NA	False	AATAAA	-25	NA	7814128	7796358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813888
ENSMUST00000115645.10	chr16	+	1085	6	NIC	ENSMUSG00000022721.20	novel	2805	11	NA	NA	-8895	-1516	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	38232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGCAGTGATTCAAAACCAG	4735	False	NA	NA	False	NA	NA	NA	18057647	18066596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr16_+_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
ENSMUST00000115655.8	chrX	-	1148	7	FSM	ENSMUSG00000031157.11	ENSMUST00000115655.8	1148	7	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_6	78.4950458450864	2417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTGTTGTTTGTAAACA	586	False	NA	-65	True	NA	NA	NA	7765218	7760821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765009
ENSMUST00000115663.10	chrX	+	1527	5	FSM	ENSMUSG00000031156.19	ENSMUST00000115663.10	1527	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	39.7586468582622	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGTTGGAAAGCCTGGA	NA	False	NA	NA	False	AATAAA	-20	NA	7750482	7760703	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7758378_7759107_7760429
ENSMUST00000115677.8	chrX	+	2943	10	FSM	ENSMUSG00000000134.18	ENSMUST00000115677.8	2943	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	93.7669820010234	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTCTCCCGTTCTTGT	NA	False	NA	24	True	AATAAA	-35	NA	7630197	7641440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7630268_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
ENSMUST00000115687.8	chrX	+	1299	11	FSM	ENSMUSG00000039382.13	ENSMUST00000115687.8	1299	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	65.9799969687784	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGCACTTTTTGTGACTG	4716	False	NA	11	True	AATAAA	-13	NA	7589165	7594242	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7589221_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ENSMUST00000115688.8	chrX	+	1510	11	FSM	ENSMUSG00000039382.13	ENSMUST00000115688.8	1510	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	67.1240642392875	388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCATTTATGACTTGACC	4039	False	NA	-2	True	AATAAA	-11	NA	7588488	7594421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593450_7593511_7593585_7593732_7593988
ENSMUST00000115689.10	chrX	+	1568	11	FSM	ENSMUSG00000039382.13	ENSMUST00000115689.10	1568	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	58.911883351324	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGGGTGGGGCGTGCTT	4038	False	NA	17	True	AATAAA	-30	NA	7588487	7594440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7588618_7590091_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
ENSMUST00000115749.3	chr16	-	3893	20	FSM	ENSMUSG00000022789.16	ENSMUST00000115749.3	3893	20	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_19	330.475926430562	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGTGAATTCTTTCTGA	NA	False	NA	-15	True	AATAAA	-21	NA	16176397	16130101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176362
ENSMUST00000115776.2	chr16	-	1236	3	FSM	ENSMUSG00000022674.16	ENSMUST00000115776.2	1236	3	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	698.5	1473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAGACTATCAAAGACTT	NA	False	NA	NA	False	AAGAAA	-4	NA	15412371	15373368	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_15374408_15398922_15399072_15412323
ENSMUST00000115805.3	chr16	+	984	9	FSM	ENSMUSG00000022681.16	ENSMUST00000115805.3	984	9	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_8	226.530902969109	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTAGATGACTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	13637188	13653312	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652998
ENSMUST00000115807.9	chr16	-	964	4	FSM	ENSMUSG00000022683.14	ENSMUST00000115807.9	964	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	20.0720922897661	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTGTGTAAGAGGTAAAT	NA	False	NA	0	True	AATAAA	-20	NA	13548307	13532920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_13533461_13542893_13543080_13545826_13545978_13548220
ENSMUST00000115808.4	chr18	+	3385	8	FSM	ENSMUSG00000041915.10	ENSMUST00000115808.4	3385	8	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_2	12.315578321287	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCTAAACTTCACCCCT	6921	False	NA	NA	False	TTTAAA	-26	NA	31892932	31915796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_31893248_31894832_31894944_31904722_31905168_31907288_31907400_31907689_31907805_31909039_31909131_31911909_31912007_31913696
ENSMUST00000115830.8	chr18	+	2496	8	FSM	ENSMUSG00000024277.15	ENSMUST00000115830.8	2496	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	61.7546164514138	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGCTTTGAAATTTCTT	3198	False	NA	NA	False	AATAAA	-18	NA	23886781	24025421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_23886927_23905660_23905717_23965909_23966038_23986710_23986857_23991000_23991215_24011000_24011141_24016594_24016754_24023913
ENSMUST00000115844.3	chr16	-	3292	16	FSM	ENSMUSG00000022536.15	ENSMUST00000115844.3	3292	16	0	0	0	0	multi-exon	FALSE	canonical	3	744	junction_6	120.52477845747	1988	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAACTGTATCATTGTA	8116	False	NA	-8	True	AATAAA	-13	NA	4867721	4831772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
ENSMUST00000115851.10	chr16	-	1306	5	FSM	ENSMUSG00000063445.15	ENSMUST00000115851.10	1306	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	76.6811580507233	1370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTTTCCCAAAAGAAAAGG	4796	False	NA	-6	True	AATAAA	-18	NA	4537020	4529180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_4529545_4531503_4531695_4532280_4532531_4534160_4534400_4536758
ENSMUST00000115854.4	chr16	+	2505	11	FSM	ENSMUSG00000004069.18	ENSMUST00000115854.4	2505	11	0	0	0	0	multi-exon	FALSE	canonical	3	681	junction_10	58.1896898084188	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	35	True	TTTAAA	-8	NA	4501959	4525559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4524431
ENSMUST00000116058.3	chr4	-	393	1	FSM	ENSMUSG00000079942.6	ENSMUST00000116058.3	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1941	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCACACCCCGGAAGCAA	NA	False	NA	NA	False	NA	NA	NA	125964052	125963659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_125963700_125964100
ENSMUST00000116115.3	chr3	+	425	1	FSM	ENSMUSG00000100755.2	ENSMUST00000116115.3	425	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6975	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCATAAAATTTGACAATGG	7664	False	NA	NA	False	AAGAAA	-12	NA	37768888	37769313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_37768900_37769300
ENSMUST00000116238.9	chr10	-	3851	22	FSM	ENSMUSG00000037012.19	ENSMUST00000116238.9	3851	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	213.005232388651	698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	NA	False	NA	-3	True	AGTAAA	-19	NA	62215687	62104882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62127753_62127823_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62188836_62188885_62194114_62194210_62200801_62200848_62215593
ENSMUST00000116279.10	chr4	-	1969	7	FSM	ENSMUSG00000046671.19	ENSMUST00000116279.10	1969	7	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_6	102.782402298361	849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTTTCTTGGTTCATC	NA	False	NA	0	True	ATTAAA	-23	NA	134262698	134252867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262560
ENSMUST00000116305.8	chr11	+	1827	14	FSM	ENSMUSG00000025156.18	ENSMUST00000116305.8	1827	14	0	0	0	0	multi-exon	FALSE	canonical	3	682	junction_1	155.049677093711	2478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGGCTCCTTTCCTTTC	1424	False	NA	2	True	ATTAAA	-19	NA	120675130	120679928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
ENSMUST00000116309.10	chr4	+	1238	11	FSM	ENSMUSG00000028601.19	ENSMUST00000116309.10	1238	11	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_10	237.455280000256	3633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGTGCTGGAATTGTTG	NA	False	NA	23	True	AATAAA	-16	NA	108022662	108036504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103_108036357_108036395
ENSMUST00000116358.8	chr11	+	1159	11	FSM	ENSMUSG00000023170.15	ENSMUST00000116358.8	1159	11	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	67.5763272159711	1057	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATGCCTGAGTGCTGTTT	4091	False	NA	11	True	AATAAA	-21	NA	69804875	69807416	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69804897_69805098_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
ENSMUST00000116359.3	chr11	+	3978	23	FSM	ENSMUSG00000020898.19	ENSMUST00000116359.3	3978	23	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_14	52.8328292942908	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTGTTCATCTCTGA	5272	False	NA	18	True	AATAAA	-18	NA	68906922	68927296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922236_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
ENSMUST00000116363.2	chr11	-	1283	5	FSM	ENSMUSG00000020910.17	ENSMUST00000116363.2	1283	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	11.1579568022107	776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCTGTTTGTGTACAAA	NA	False	NA	2	True	CATAAA	-28	NA	66943396	66928866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_66929272_66931044_66931162_66932306_66932934_66942506_66942605_66943360
ENSMUST00000116376.9	chr11	+	3016	7	FSM	ENSMUSG00000013646.18	ENSMUST00000116376.9	3016	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	38.7101049110206	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTACTGTCTGTTAAAAG	443	False	NA	19	True	AATAAA	-20	NA	58221549	58238554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_58221629_58222079_58222690_58228562_58228626_58228774_58228904_58232111_58232274_58236137_58236312_58236755
ENSMUST00000116378.8	chr11	-	3069	6	FSM	ENSMUSG00000049321.18	ENSMUST00000116378.8	3069	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	26.1763251813542	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	0	True	NA	NA	NA	50806969	50789538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_50792119_50796912_50796985_50801262_50801353_50801532_50801704_50803106_50803229_50806935
ENSMUST00000116380.9	chr2	+	2756	17	FSM	ENSMUSG00000027642.16	ENSMUST00000116380.9	2756	17	0	0	0	0	multi-exon	FALSE	canonical	3	1870	junction_1	194.730412606121	1674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTTCTTCTGTGATAAA	NA	False	NA	20	True	AATAAA	-17	NA	157120978	157168239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
ENSMUST00000116393.3	chr12	+	1226	4	FSM	ENSMUSG00000041449.17	ENSMUST00000116393.3	1226	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	12.3917535302941	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCAGAACTTCTCAAATGG	1867	False	NA	NA	False	NA	NA	NA	104216410	104219928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_104217017_104217730_104218005_104218943_104219095_104219733
ENSMUST00000116402.10	chr12	+	4300	7	FSM	ENSMUSG00000021255.18	ENSMUST00000116402.10	4300	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	245.866946854504	2209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTTCATGCGTTGTCTGT	NA	False	NA	19	True	AATAAA	-19	NA	86407890	86568402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_86408313_86516919_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
ENSMUST00000116403.9	chr13	-	2970	18	FSM	ENSMUSG00000021546.19	ENSMUST00000116403.9	2970	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	2601.31267501967	7481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGTTTTGTGTGTGTGTG	3924	False	NA	-8	True	AATACA	-15	NA	58551157	58538955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877_58549932_58550206_58550327_58551084
ENSMUST00000116410.3	chr2	-	631	1	FSM	ENSMUSG00000080198.3	ENSMUST00000116410.3	631	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	261	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGCTCCAATAAACCTCAG	7875	False	NA	NA	False	NA	NA	NA	60105918	60105287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_60105300_60105900
ENSMUST00000116415.9	chr8	-	1520	9	FSM	ENSMUSG00000031816.16	ENSMUST00000116415.9	1520	9	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_6	25.939533052852	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTGTATGTTTGTGTAAA	NA	False	NA	-7	True	NA	NA	NA	121835066	121824291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_121824665_121825446_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832456_121832571_121833608_121833713_121835026
ENSMUST00000116420.4	chr12	-	2066	5	FSM	ENSMUSG00000034442.12	ENSMUST00000116420.4	2066	5	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	19.266226926931	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTAATTCAAGGTATTT	NA	False	NA	-6	True	AATAAA	-21	NA	73333483	73326784	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_73327407_73327778_73328431_73329385_73329511_73331408_73332050_73333457
ENSMUST00000116432.2	chr2	-	1674	11	FSM	ENSMUSG00000027246.13	ENSMUST00000116432.2	1674	11	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_5	7.95235814082842	1339	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTGTGCGATCATTAGC	NA	False	NA	-17	True	ATTAAA	-15	NA	121273082	121269507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_121270031_121270107_121270153_121270328_121270501_121270596_121270640_121270714_121270908_121271576_121271653_121271742_121271823_121271907_121272095_121272191_121272305_121272626_121272663_121272876
ENSMUST00000116434.11	chr13	-	2600	6	FSM	ENSMUSG00000021327.20	ENSMUST00000116434.11	2600	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	29.6486087363303	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGTTCTTACTTGGG	NA	False	NA	2	True	AATAAA	-23	NA	21586925	21571172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580745_21586841
ENSMUST00000116440.9	chr15	-	896	7	FSM	ENSMUSG00000055762.17	ENSMUST00000116440.9	896	7	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_6	1385.14264207297	6830	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781146	75767336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772980_75773102_75781093
ENSMUST00000116468.2	chr14	+	2939	14	FSM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	0	0	0	0	multi-exon	FALSE	canonical	3	627	junction_4	88.7108193370776	4673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTACTAGTCGTTGTGA	1778	False	NA	32	True	ATTAAA	-18	NA	56905704	56934887	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_56906022_56909861_56910018_56911347_56912197_56913978_56914076_56916020_56916276_56922414_56922541_56922618_56922708_56925821_56925963_56926485_56926573_56928363_56928519_56930880_56931036_56933077_56933206_56934115_56934200_56934587
ENSMUST00000116514.4	chr6	-	2739	12	FSM	ENSMUSG00000030216.13	ENSMUST00000116514.4	2739	12	0	0	0	0	multi-exon	FALSE	canonical	3	1089	junction_11	207.479880534104	973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGTGTTTGTGTAATG	2832	False	NA	-1	True	AATAAA	-19	NA	136805231	136790651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_136791640_136793048_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803108_136805017
ENSMUST00000116515.9	chr6	-	2075	5	FSM	ENSMUSG00000032641.19	ENSMUST00000116515.9	2075	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	27.6981497577004	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTCCTGTGGATTTTGT	NA	False	NA	-3	True	ACTAAA	-34	NA	134874888	134846055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_134847407_134854179_134854298_134864592_134864749_134873820_134874177_134874794
ENSMUST00000116527.2	chrX	-	837	3	Antisense	novelGene_ENSMUSG00000047844.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41403	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCACGTGCCACTTGCGTC	NA	False	NA	NA	False	NA	NA	NA	135041192	135039744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chrX_-_135039916_135040271_135040349_135040603
ENSMUST00000116542.9	chr19	-	2100	2	FSM	ENSMUSG00000024742.16	ENSMUST00000116542.9	2100	2	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	0	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	2155	False	NA	NA	False	AATAAA	-14	NA	10181307	10176501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10178462_10181167
ENSMUST00000116551.10	chr19	+	985	4	FSM	ENSMUSG00000038812.17	ENSMUST00000116551.10	985	4	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_1	23.6971634495683	7627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTCTCTTTGCAGCAA	9314	False	NA	16	True	ATTAAA	-16	NA	6887114	6888396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6887631_6887730_6887833_6887951_6888042_6888119
ENSMUST00000116552.8	chr9	+	888	6	FSM	ENSMUSG00000033543.18	ENSMUST00000116552.8	888	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	405.059798054559	5482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919847	69930020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69925961_69926101_69926670_69926798_69929718
ENSMUST00000116556.4	chr17	+	1831	11	FSM	ENSMUSG00000024101.16	ENSMUST00000116556.4	1831	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	39.5182236442885	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGGGAGCTGTCCTTTT	NA	False	NA	24	True	AATAAA	-32	NA	66418639	66426442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_66418727_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
ENSMUST00000116560.3	chr19	+	1148	6	FSM	ENSMUSG00000056201.9	ENSMUST00000116560.3	1148	6	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_4	3070.36039578418	12166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATGGCTTTTGGGTTTGG	NA	False	NA	12	True	NA	NA	NA	5540512	5544057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408_5543519_5543520_5543527_5543528
ENSMUST00000116567.4	chr19	+	1388	10	FSM	ENSMUSG00000080268.5	ENSMUST00000116567.4	1388	10	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_4	16.1528195757556	1135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGCTGATGTGTGGCTG	2730	False	NA	8	True	AATAAA	-19	NA	5091381	5099945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5091519_5095920_5096067_5096163_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020_5099061_5099434
ENSMUST00000116578.8	chrX	-	1418	11	FSM	ENSMUSG00000031387.15	ENSMUST00000116578.8	1418	11	0	0	0	0	multi-exon	FALSE	canonical	3	1767	junction_7	141.190120050944	11563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	72974456	72965726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974319
ENSMUST00000116621.2	chrX	-	908	3	FSM	ENSMUSG00000031059.10	ENSMUST00000116621.2	908	3	0	0	0	0	multi-exon	FALSE	canonical	3	2198	junction_1	70	24493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGTTACTGCTGCTTT	NA	False	NA	-4	True	ATTAAA	-14	NA	20483858	20481564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_20481782_20481952_20482084_20483298
ENSMUST00000116625.10	chr16	+	1094	7	FSM	ENSMUSG00000022871.14	ENSMUST00000116625.10	1094	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	171.730408877791	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTTGGCTTCAACCTG	NA	False	NA	9	True	AATAAA	-15	NA	22739201	22758502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22739246_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ENSMUST00000116641.9	chr17	+	1858	11	FSM	ENSMUSG00000002279.20	ENSMUST00000116641.9	1858	11	0	0	0	0	multi-exon	TRUE	canonical	1	15	junction_2	37.5467708331888	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGCCTCCTGTCTCTAT	NA	False	NA	107	True	NA	NA	NA	25798150	25881800	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25798354_25804516_25804827_25807649_25807661_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
ENSMUST00000116669.2	chr18	-	2019	15	FSM	ENSMUSG00000047879.18	ENSMUST00000116669.2	2019	15	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_12	235.664107213151	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACACTTGATTATACACT	14	True	NA	-65	True	AATAAA	-15	NA	10030067	9995593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10022817_10022851_10024533_10024680_10029912
ENSMUST00000117083.2	chr9	-	1999	13	FSM	ENSMUSG00000032386.16	ENSMUST00000117083.2	1999	13	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_4	28.3474229673332	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTCTAGGTCATTTTT	NA	False	NA	-8	True	TATAAA	-12	NA	65792338	65740437	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
ENSMUST00000117095.8	chr7	-	2282	14	FSM	ENSMUSG00000003363.16	ENSMUST00000117095.8	2282	14	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_13	66.1410542194063	973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTATGAGATGGTATGTT	NA	False	NA	1	True	AGTAAA	-31	NA	27252637	27231424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27244612_27244688_27252422
ENSMUST00000117099.8	chr16	+	1894	14	FSM	ENSMUSG00000022945.13	ENSMUST00000117099.8	1894	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	247.655157271309	1113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCCAAATAAACACTCATGAA	4389	False	NA	-17	True	NA	NA	NA	93680811	93702965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_93680864_93681320_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
ENSMUST00000117136.2	chr16	-	758	4	FSM	ENSMUSG00000022671.14	ENSMUST00000117136.2	758	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_3	237.265439727089	3107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGAGTTCTATGTGGAG	NA	False	NA	-11	True	ATTAAA	-13	NA	15681233	15666313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_15666594_15680261_15680408_15680611_15680797_15681086
ENSMUST00000117138.3	chr12	-	735	2	FSM	ENSMUSG00000008822.16	ENSMUST00000117138.3	735	2	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	0	950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTATGCTTACATTGCTTC	4420	False	NA	-11	True	AATAAA	-13	NA	85327080	85319182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_85319602_85326764
ENSMUST00000117146.9	chr1	-	2181	6	FSM	ENSMUSG00000025939.20	ENSMUST00000117146.9	2181	6	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_5	28.7888867447145	967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGTTTCTATGACAATG	NA	False	NA	NA	False	TATAAA	-21	NA	16689713	16640005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_16641507_16652150_16652227_16655499_16655656_16668174_16668278_16672485_16672578_16689460
ENSMUST00000117220.8	chr16	+	1230	10	FSM	ENSMUSG00000039200.17	ENSMUST00000117220.8	1230	10	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	25.7557377042739	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTCAGAAGCTACAAAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	10010785	10058678	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424
ENSMUST00000117249.2	chr5	+	1036	2	FSM	ENSMUSG00000106943.3	ENSMUST00000117249.2	1036	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTTGTTCACTTGTTCT	NA	False	NA	18	True	AATAAA	-20	NA	74253743	74254997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_74253801_74254018
ENSMUST00000117283.3	chr10	+	177	1	FSM	ENSMUSG00000083429.3	ENSMUST00000117283.3	177	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTGTTCCCCTGCAAAT	3462	False	NA	-22	True	NA	NA	NA	42311884	42312061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_42311900_42312100
ENSMUST00000117291.8	chr10	+	3669	28	FSM	ENSMUSG00000040675.18	ENSMUST00000117291.8	3669	28	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_27	39.2310170953031	780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTCAGCTAGTAAAGCCA	NA	False	NA	14	True	AATAAA	-19	NA	3923117	4106111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105541
ENSMUST00000117299.10	chr2	-	747	4	FSM	ENSMUSG00000076437.12	ENSMUST00000117299.10	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	1785	junction_1	271.099407761966	34178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGTTTAAATTTTGTCTT	296	False	NA	-8	True	AATAAA	-25	NA	84501114	84499558	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84499742_84500330_84500461_84500588_84500735_84500826
ENSMUST00000117355.2	chr3	-	1756	9	FSM	ENSMUSG00000005625.16	ENSMUST00000117355.2	1756	9	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_2	388.88942435479	4999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTTTTGCTTCAAATAG	NA	False	NA	-21	True	AATAAA	-14	NA	94949854	94940015	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_94940858_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
ENSMUST00000117361.8	chr18	-	2687	14	FSM	ENSMUSG00000044252.19	ENSMUST00000117361.8	2687	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_13	98.4808875218973	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12996437	12888384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996199
ENSMUST00000117364.8	chr5	-	1657	10	FSM	ENSMUSG00000035234.19	ENSMUST00000117364.8	1657	10	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	36.8299395118217	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGTAAAGTTTGTAAT	NA	False	NA	-14	True	AATAAA	-8	NA	100968806	100953068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_100953318_100953763_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
ENSMUST00000117389.8	chr9	+	1952	7	FSM	ENSMUSG00000042496.19	ENSMUST00000117389.8	1952	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	4.53688586293873	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATGAGCATTCTTGTTT	NA	False	NA	NA	False	AATAAA	-21	NA	31191833	31241914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_31191959_31224722_31224918_31227465_31227631_31229807_31229868_31236922_31237131_31238611_31238854_31240957
ENSMUST00000117399.2	chrX	+	3842	13	FSM	ENSMUSG00000031207.17	ENSMUST00000117399.2	3842	13	0	0	0	0	multi-exon	FALSE	canonical	3	982	junction_10	94.3325971702724	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATGACTCAGTCTTTCTG	NA	False	NA	6	True	AATAAA	-16	NA	95139647	95212158	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075
ENSMUST00000117411.8	chr6	+	933	7	FSM	ENSMUSG00000029911.15	ENSMUST00000117411.8	933	7	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	935.620961358462	6408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTGGTTATATTTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	40448408	40457926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_40448760_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUST00000117425.8	chr5	-	1231	7	FSM	ENSMUSG00000015806.13	ENSMUST00000117425.8	1231	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	385.068680742655	1168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	False	NA	-19	True	AATAAA	-15	NA	45605515	45591394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45605434
ENSMUST00000117449.8	chr12	+	1874	7	FSM	ENSMUSG00000005078.17	ENSMUST00000117449.8	1874	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	199.890525593942	3310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCATGTTCTGATAATTCT	NA	False	NA	14	True	AATAAA	-20	NA	72132630	72148235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_72132958_72136106_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
ENSMUST00000117476.2	chr11	-	393	1	FSM	ENSMUSG00000083022.2	ENSMUST00000117476.2	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	508	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGTAAAGCATAAATAAAAA	NA	False	NA	-51	True	AAAACA	-35	NA	6123036	6122643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6122600_6123000
ENSMUST00000117492.9	chr3	+	3886	24	FSM	ENSMUSG00000025437.16	ENSMUST00000117492.9	3886	24	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_13	62.1055263911158	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTGAATGTTGAATTT	NA	False	NA	NA	False	AATAAA	-17	NA	152052114	152098970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080551_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
ENSMUST00000117536.8	chr5	+	1862	10	FSM	ENSMUSG00000029247.18	ENSMUST00000117536.8	1862	10	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	1007.72571224074	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGGGGATCTGACCCCAT	347	False	NA	9	True	NA	NA	NA	77099214	77115160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ENSMUST00000117557.8	chr9	+	2019	9	FSM	ENSMUSG00000015656.18	ENSMUST00000117557.8	2019	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	7062.92189779662	15329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2485	False	NA	10	True	AATAAA	-20	NA	40712597	40716496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_40712645_40713213_40713424_40713713_40713920_40714091_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
ENSMUST00000117563.2	chr9	-	472	1	FSM	ENSMUSG00000080848.4	ENSMUST00000117563.2	472	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2944	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGTGGTAGAGCAGAGTT	NA	False	NA	-63	True	NA	NA	NA	115870132	115869660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_115869700_115870100
ENSMUST00000117571.2	chr6	+	333	1	FSM	ENSMUSG00000095526.3	ENSMUST00000117571.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2895	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	48500451	48500784	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_48500500_48500800
ENSMUST00000117583.8	chr6	+	950	8	FSM	ENSMUSG00000029993.17	ENSMUST00000117583.8	950	8	0	0	0	0	multi-exon	FALSE	canonical	3	2373	junction_7	253.923417669218	10725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTTGCTTCCTCTCACG	NA	False	NA	23	True	AATAAA	-29	NA	86986817	87005441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
ENSMUST00000117600.9	chr17	+	1595	5	FSM	ENSMUSG00000046711.17	ENSMUST00000117600.9	1595	5	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_4	1949.43562345618	13327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCTGGTGTAAGGAGCA	NA	False	NA	NA	False	AATAAA	-23	NA	27775626	27782644	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781414
ENSMUST00000117634.2	chr7	+	1281	8	FSM	ENSMUSG00000025511.16	ENSMUST00000117634.2	1281	8	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	83.3289522657899	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAACTGAGGAAGTTCTT	4651	False	NA	39	True	NA	NA	NA	141056312	141073334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_141056392_141062399_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
ENSMUST00000117637.8	chrX	-	1593	6	FSM	ENSMUSG00000031310.17	ENSMUST00000117637.8	1593	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	47.004680617998	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCAGCCTCTCCTT	NA	False	NA	-4	True	NA	NA	NA	100463447	100458538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_100459013_100459366_100459545_100460514_100460588_100460892_100460937_100461878_100462559_100463303
ENSMUST00000117641.8	chr19	+	2004	9	FSM	ENSMUSG00000024663.21	ENSMUST00000117641.8	2004	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	8.51377560192891	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGCTAGGCGGCAGTGGC	3968	False	NA	2	True	AATAAA	-17	NA	9995557	10012819	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_9995724_10003893_10004150_10004747_10004844_10004923_10005002_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
ENSMUST00000117644.8	chr16	-	1727	12	FSM	ENSMUSG00000058240.15	ENSMUST00000117644.8	1727	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	525.741459887489	2963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGTTTTTAAATATTCA	9001	False	NA	NA	False	NA	NA	NA	91525690	91486229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUST00000117672.9	chr17	+	2162	7	FSM	ENSMUSG00000005936.20	ENSMUST00000117672.9	2162	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	191.759760000777	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCTCTCTCCAGTATTG	NA	False	NA	2	True	AATAAA	-13	NA	29171654	29186903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29171732_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
ENSMUST00000117710.2	chr11	+	580	2	FSM	ENSMUSG00000020267.7	ENSMUST00000117710.2	580	2	0	0	0	0	multi-exon	FALSE	canonical	3	4806	junction_1	0	477	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCATGTCCTTGGGGGTC	NA	False	NA	NA	False	AATGAA	-36	NA	54757306	54761133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_54757427_54760673
ENSMUST00000117713.8	chr16	-	1964	6	FSM	ENSMUSG00000004071.14	ENSMUST00000117713.8	1964	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	194.363988434072	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGGCCTCTGCTGTCTTG	NA	False	NA	-19	True	ATTAAA	-21	NA	4607794	4585202	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_4586514_4586608_4586832_4587503_4587660_4587906_4588016_4588534_4588600_4607694
ENSMUST00000117757.9	chr6	-	1273	7	FSM	ENSMUSG00000057666.19	ENSMUST00000117757.9	1273	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	4049.97499649346	42080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCCTTGGTTTTAATGC	NA	False	NA	-15	True	AATAAA	-15	NA	125143430	125138815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125143356
ENSMUST00000117775.2	chr8	+	728	6	FSM	ENSMUSG00000036810.17	ENSMUST00000117775.2	728	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	74.0027026533491	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGGCCGGTATCCTCCG	NA	False	NA	NA	False	NA	NA	NA	88845434	88857698	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88856433_88856974_88857030_88857344
ENSMUST00000117812.8	chr7	-	3039	6	FSM	ENSMUSG00000030452.17	ENSMUST00000117812.8	3039	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	82.412620392753	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612187	55581034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611947
ENSMUST00000117814.8	chr1	+	1268	4	FSM	ENSMUSG00000026270.12	ENSMUST00000117814.8	1268	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	7.1336448530109	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCCGGACCTGCTGTGGT	2650	False	NA	18	True	CATAAA	-18	NA	92862487	92868694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_92862737_92865666_92865799_92867044_92867242_92868004
ENSMUST00000117828.9	chr18	-	1962	9	FSM	ENSMUSG00000002475.17	ENSMUST00000117828.9	1962	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	3.63145976158349	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTTCTTTGTGAGTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	10706771	10644410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_10645236_10647725_10647892_10647969_10648019_10652187_10652362_10658779_10658893_10682068_10682115_10704547_10704731_10706000_10706165_10706529
ENSMUST00000117831.8	chr19	-	1378	7	FSM	ENSMUSG00000024847.16	ENSMUST00000117831.8	1378	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	105.801307490346	1377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATCTTGAAGGCTGGTCA	9616	False	NA	-3	True	TATAAA	-35	NA	4175858	4164445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4164797_4165080_4165223_4165319_4165497_4165981_4166171_4168086_4168267_4171335_4171546_4175729
ENSMUST00000117836.8	chr16	+	1099	7	FSM	ENSMUSG00000022971.19	ENSMUST00000117836.8	1099	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	3.19722101554181	1195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGGCTCTGTCTCTAAT	NA	False	NA	8	True	AATAAA	-20	NA	91169737	91190928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91182829_91182954_91184831_91185005_91188608_91188767_91190644
ENSMUST00000117851.2	chr11	-	599	1	FSM	ENSMUSG00000083992.2	ENSMUST00000117851.2	599	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3407	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATAAAGACTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	86521852	86521253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_86521300_86521900
ENSMUST00000117878.8	chr5	+	2931	9	FSM	ENSMUSG00000041264.17	ENSMUST00000117878.8	2931	9	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_8	110.241141934398	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTGGTTTCATTTTGT	NA	False	NA	15	True	ATTAAA	-15	NA	149121525	149152243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
ENSMUST00000117890.8	chr17	+	1641	7	FSM	ENSMUSG00000024160.17	ENSMUST00000117890.8	1641	7	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	37.7388688519174	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTGTCTATTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	25105616	25111123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25105735_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
ENSMUST00000117891.2	chr16	-	372	1	FSM	ENSMUSG00000089814.2	ENSMUST00000117891.2	372	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1173	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGTTTCCAGTCATTGT	NA	False	NA	NA	False	NA	NA	NA	94160171	94159799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_94159800_94160200
ENSMUST00000117892.2	chr15	+	2536	3	FSM	ENSMUSG00000081534.4	ENSMUST00000117892.2	2536	3	0	0	0	0	multi-exon	TRUE	canonical	3	145	junction_2	1	317	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTTTTTTTTTCACT	NA	False	NA	17	True	AATAAA	-18	NA	97682235	97690573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_97682498_97687783_97687952_97688467
ENSMUST00000117927.2	chr8	-	456	1	FSM	ENSMUSG00000081378.2	ENSMUST00000117927.2	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5988	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTGTTGTGTGCACAAGC	3661	False	NA	NA	False	NA	NA	NA	120329364	120328908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_120328900_120329400
ENSMUST00000117989.2	chr7	+	1317	3	FSM	ENSMUSG00000047084.9	ENSMUST00000117989.2	1317	3	0	0	0	0	multi-exon	FALSE	canonical	3	448	junction_2	14	2335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGTTGCTTGGTTCTCT	NA	False	NA	13	True	AATAAA	-13	NA	79910962	79915122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_79911172_79911568_79911680_79914125
ENSMUST00000118001.8	chr17	+	1652	7	FSM	ENSMUSG00000014767.18	ENSMUST00000118001.8	1652	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_5	125.630963097832	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	23	True	AAGAAA	-31	NA	15720171	15737689	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_15720287_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15735877_15735973_15736965
ENSMUST00000118012.9	chr2	+	1213	4	FSM	ENSMUSG00000078877.12	ENSMUST00000118012.9	1213	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	11.7284080571728	503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGTGAGTTCTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	176490404	176500411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_176490512_176493973_176494029_176499154_176499282_176499487
ENSMUST00000118059.3	chr1	+	1179	6	FSM	ENSMUSG00000026111.16	ENSMUST00000118059.3	1179	6	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	196.480635178126	2035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	37469282	37478068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_37469509_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
ENSMUST00000118097.8	chr5	-	1232	7	FSM	ENSMUSG00000015806.13	ENSMUST00000118097.8	1232	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	385.068680742655	1252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	False	NA	-19	True	AATAAA	-15	NA	45607513	45591394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607431
ENSMUST00000118108.2	chr2	-	1431	8	FSM	ENSMUSG00000070953.14	ENSMUST00000118108.2	1431	8	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_7	117.809081109381	1711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCCCACATTTGTATTA	2821	False	NA	-42	True	NA	NA	NA	34689740	34669248	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689434
ENSMUST00000118110.3	chr7	-	1129	5	FSM	ENSMUSG00000042659.16	ENSMUST00000118110.3	1129	5	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_4	68.2289344779764	2129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGCCTTCACTGTTAAA	NA	False	NA	69	True	NA	NA	NA	68398936	68391258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_68391650_68392319_68392423_68394529_68394678_68394892_68394960_68398516
ENSMUST00000118155.8	chr11	-	884	3	FSM	ENSMUSG00000020738.17	ENSMUST00000118155.8	884	3	0	0	0	0	multi-exon	FALSE	canonical	2	199	junction_1	1955	2008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115427007	115413927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115414596_115425377_115425510_115426923
ENSMUST00000118186.2	chr9	+	1317	11	FSM	ENSMUSG00000002031.14	ENSMUST00000118186.2	1317	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	58.6055458126618	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTGGCTCATTAGTGTC	NA	False	NA	10	True	AATACA	-19	NA	44687673	44702192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44687735_44689858_44689936_44693396_44693531_44695027_44695103_44695256_44695351_44695628_44695758_44697590_44697713_44698134_44698202_44700863_44700925_44701187_44701274_44701781
ENSMUST00000118190.2	chr7	+	1391	3	FSM	ENSMUSG00000038646.14	ENSMUST00000118190.2	1391	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	414	7194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAACTTTACCTTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	81413030	81419228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_81413113_81417274_81417472_81418116
ENSMUST00000118193.8	chr15	+	1671	5	FSM	ENSMUSG00000022151.17	ENSMUST00000118193.8	1671	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	36.9323706252388	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTCCTTTTATTCTT	NA	False	NA	31	True	AGTAAA	-31	NA	5215005	5247817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_5215054_5219062_5219285_5237849_5237932_5241479_5241612_5246630
ENSMUST00000118198.8	chr9	+	893	5	FSM	ENSMUSG00000033543.18	ENSMUST00000118198.8	893	5	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_3	95.7131129992124	6576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATTGAATATACCAGAAG	NA	False	NA	NA	False	AATAAA	-34	NA	69919831	69930148	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69926670_69926798_69929718
ENSMUST00000118199.8	chr4	+	1915	6	FSM	ENSMUSG00000028779.17	ENSMUST00000118199.8	1915	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	92.1767866656242	1359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTCTTGACTGTGTGTC	4280	False	NA	26	True	AATAAA	-33	NA	129996350	130021928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129996521_130001155_130001444_130014960_130015235_130018855_130019012_130019446_130019591_130021045
ENSMUST00000118218.8	chrX	+	1611	9	FSM	ENSMUSG00000067562.12	ENSMUST00000118218.8	1611	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	65.1257197656963	731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846568	101853548	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_101846761_101846861_101847052_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
ENSMUST00000118224.2	chr5	-	399	1	FSM	ENSMUSG00000084235.3	ENSMUST00000118224.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	421	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCCTCTGCTTGTAATAC	NA	False	NA	-97	True	NA	NA	NA	22733717	22733318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_22733300_22733700
ENSMUST00000118248.2	chr2	+	480	1	FSM	ENSMUSG00000082399.2	ENSMUST00000118248.2	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1622	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGACTCCTGCCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	134645868	134646348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_134645900_134646300
ENSMUST00000118283.8	chr17	-	1388	3	FSM	ENSMUSG00000047407.18	ENSMUST00000118283.8	1388	3	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	292	1711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAATGAAGAGCATTTTC	NA	False	NA	78	True	AATAAA	-20	NA	71160541	71151205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_71152268_71153166_71153394_71160442
ENSMUST00000118305.8	chrX	+	1684	3	FSM	ENSMUSG00000046180.12	ENSMUST00000118305.8	1684	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	50.5	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCAGCAGTGTTTGTTC	NA	False	NA	13	True	AATAAA	-18	NA	57954719	57965664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_57954780_57956768_57956922_57964193
ENSMUST00000118310.8	chr16	+	1700	5	FSM	ENSMUSG00000044442.12	ENSMUST00000118310.8	1700	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	45.8768732587564	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCAGCCTTTGTGTAGC	NA	False	NA	1	True	AATAAA	-26	NA	87151114	87165630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87164352
ENSMUST00000118368.8	chr11	-	696	6	FSM	ENSMUSG00000020415.17	ENSMUST00000118368.8	696	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	3753.79296179211	21749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGTTCAGATTGTGAATA	NA	False	NA	-35	True	AATAAA	-11	NA	43317044	43311099	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317015
ENSMUST00000118374.8	chr14	-	1726	8	FSM	ENSMUSG00000034194.19	ENSMUST00000118374.8	1726	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_7	41.9007573844168	374	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGATTGCGTCCAAGTG	NA	False	NA	-6	True	AATAAA	-15	NA	69945033	69934755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_69935052_69936032_69936129_69937408_69937480_69941402_69941576_69942582_69943328_69943995_69944134_69944502_69944631_69944954
ENSMUST00000118420.8	chr5	+	843	4	FSM	ENSMUSG00000034211.15	ENSMUST00000118420.8	843	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	354.785381134379	687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTCCCCCAAAGAAATCTT	761	False	NA	-60	True	NA	NA	NA	129792567	129795461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129792614_129792747_129792923_129793790_129793931_129794979
ENSMUST00000118466.8	chr14	-	1567	6	FSM	ENSMUSG00000021792.16	ENSMUST00000118466.8	1567	6	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_5	66.6111101844129	1649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATCACCTCTGTGCACA	NA	False	NA	-22	True	AATAAA	-11	NA	40735745	40715696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726178_40735654
ENSMUST00000118493.8	chr7	+	922	6	FSM	ENSMUSG00000038695.14	ENSMUST00000118493.8	922	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	23.6016948543955	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTGCCTCAATAAATCTG	4834	False	NA	-7	True	NA	NA	NA	44117495	44121045	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44117615_44117729_44117842_44118230_44118394_44119835_44119962_44120536_44120732_44120838
ENSMUST00000118501.8	chr7	-	684	6	FSM	ENSMUSG00000030417.16	ENSMUST00000118501.8	684	6	0	0	0	0	multi-exon	FALSE	canonical	3	1740	junction_2	86.0883267348135	14356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGATCTGCATTTTG	NA	False	NA	NA	False	NA	NA	NA	35346946	35341406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_35341611_35342039_35342112_35343048_35343141_35343775_35343838_35345568_35345607_35346730
ENSMUST00000118504.9	chr17	-	2474	16	FSM	ENSMUSG00000024039.16	ENSMUST00000118504.9	2474	16	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_15	69.6264317626575	913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCGTGTCGACCTTATTT	1872	False	NA	-16	True	NA	NA	NA	31856212	31831613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852126_31856056
ENSMUST00000118515.9	chr7	-	1662	8	FSM	ENSMUSG00000008140.19	ENSMUST00000118515.9	1662	8	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	346.110162950988	3758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTGCCTTCTGTGCTTG	NA	False	NA	-1	True	ATTAAA	-31	NA	44145830	44139534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44140395_44140586_44140674_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ENSMUST00000118535.9	chr8	+	1419	8	FSM	ENSMUSG00000019478.18	ENSMUST00000118535.9	1419	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	133.326360361884	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTACACTGTCCTGCTC	NA	False	NA	12	True	AATAAA	-21	NA	124532723	124562026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_124532906_124550552_124550634_124554062_124554178_124555734_124555798_124556971_124557127_124559541_124559638_124560753_124560887_124561432
ENSMUST00000118539.2	chr3	-	1815	12	FSM	ENSMUSG00000028179.13	ENSMUST00000118539.2	1815	12	0	0	0	0	multi-exon	FALSE	canonical	3	948	junction_5	60.9754048777046	4465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCCCTGATCCTACTTT	NA	False	NA	-16	True	AATAAA	-18	NA	157630714	157599884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
ENSMUST00000118543.8	chr5	-	1193	5	FSM	ENSMUSG00000047215.15	ENSMUST00000118543.8	1193	5	0	0	0	0	multi-exon	FALSE	canonical	3	9546	junction_4	1705.30515964152	1226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548348	65545706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288
ENSMUST00000118551.8	chr18	+	602	5	FSM	ENSMUSG00000024608.12	ENSMUST00000118551.8	602	5	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_1	11592.6756914657	46047	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTATTTTGGTTCTGGTGT	NA	False	NA	63	True	AATAAA	-13	NA	60907752	60911613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_60907854_60909472_60909624_60910001_60910164_60910884_60910962_60911502
ENSMUST00000118558.5	chr6	-	315	4	FSM	ENSMUSG00000023089.13	ENSMUST00000118558.5	315	4	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_2	1436.47492920072	1130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTCCATGTTATTG	-4	True	NA	-31	True	ATTAAA	-27	NA	24527569	24518664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_24518824_24519190_24519257_24527271_24527317_24527524
ENSMUST00000118612.8	chr10	+	1522	7	FSM	ENSMUSG00000040195.12	ENSMUST00000118612.8	1522	7	0	0	0	0	multi-exon	TRUE	canonical	3	127	junction_4	19.2411595862157	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTGAGTTTGACTACTCT	NA	False	NA	NA	False	AATAAA	-23	NA	127512932	127531037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127513097_127524101_127524218_127525093_127525314_127526729_127526803_127528836_127528931_127529352_127529468_127530297
ENSMUST00000118623.2	chr19	-	2406	12	FSM	ENSMUSG00000024826.16	ENSMUST00000118623.2	2406	12	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	287.667249232497	2397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGCTGGACAGTTTGT	1351	False	NA	-26	True	AATAAA	-14	NA	5962820	5947414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5953758_5953801_5954267_5954347_5954481_5954575_5955416_5955581_5956551_5956660_5957028_5957190_5962768
ENSMUST00000118626.8	chr6	+	748	9	FSM	ENSMUSG00000030116.15	ENSMUST00000118626.8	748	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	61.1513235752097	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	NA	False	NA	4	True	AATACA	-15	NA	122490617	122505591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_122490692_122491299_122491360_122492306_122492343_122497537_122497571_122497854_122497888_122498851_122498888_122502909_122502998_122503745_122503820_122505277
ENSMUST00000118627.2	chr11	-	831	5	FSM	ENSMUSG00000023764.19	ENSMUST00000118627.2	831	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	37.5724300518346	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACACTCTGCACTTTGTT	8018	False	NA	NA	False	NA	NA	NA	3143424	3135567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_3135975_3136064_3136137_3137239_3137411_3138940_3139057_3143359
ENSMUST00000118628.8	chr7	+	864	5	FSM	ENSMUSG00000038695.14	ENSMUST00000118628.8	864	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	14.4460202131937	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTTGTGCCTGGGCTCA	4807	False	NA	20	True	AATAAA	-12	NA	44117468	44121072	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44117615_44118230_44118394_44119835_44119962_44120536_44120732_44120838
ENSMUST00000118703.8	chr16	-	2554	6	FSM	ENSMUSG00000004071.14	ENSMUST00000118703.8	2554	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	186.698259231306	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCTATTTTAGACCAT	NA	False	NA	-14	True	AATAAA	-14	NA	4608156	4584704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4608015
ENSMUST00000118737.3	chr7	+	1395	6	FSM	ENSMUSG00000030917.14	ENSMUST00000118737.3	1395	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	36.3780153389379	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTCTTTTTCTTCTACCT	NA	False	NA	11	True	ATTAAA	-20	NA	119701712	119720215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_119701739_119702137_119702180_119703852_119704053_119714608_119714778_119715442_119715582_119719396
ENSMUST00000118762.9	chr17	+	3853	7	FSM	ENSMUSG00000005936.20	ENSMUST00000118762.9	3853	7	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_1	75.1962247870345	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTTGTTATTTAATAGAA	NA	False	NA	NA	False	AATAAA	-16	NA	29171395	29188523	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29171544_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
ENSMUST00000118765.8	chr5	+	713	3	FSM	ENSMUSG00000029462.19	ENSMUST00000118765.8	713	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	716	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACCTTCCATTTAGAC	732	False	NA	1	True	AATAAA	-1	NA	122492484	122501333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_122492540_122498075_122498268_122500867
ENSMUST00000118784.8	chr11	+	1404	5	FSM	ENSMUSG00000023723.18	ENSMUST00000118784.8	1404	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	110.143939915004	2497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTCTCTATTTGTGGG	NA	False	NA	19	True	AATAAA	-19	NA	88095236	88102333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_88095407_88096014_88096186_88100678_88100757_88100929_88101057_88101475
ENSMUST00000118788.8	chr17	+	1191	9	FSM	ENSMUSG00000024158.18	ENSMUST00000118788.8	1191	9	0	0	0	0	multi-exon	FALSE	canonical	3	330	junction_6	27.6812210713328	1749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTTATGGACTCTTT	NA	False	NA	11	True	AAAAAG	-24	NA	25069463	25083424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25069643_25071704_25071881_25072605_25072671_25075611_25075730_25076489_25076599_25079919_25080024_25080286_25080389_25082650_25082731_25083166
ENSMUST00000118808.9	chr7	-	1872	7	FSM	ENSMUSG00000008140.19	ENSMUST00000118808.9	1872	7	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_1	150.719386056782	4092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATTTCTTGGTTCATTCC	NA	False	NA	28	True	NA	NA	NA	44145953	44139360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44140395_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ENSMUST00000118810.2	chr7	-	1350	2	FSM	ENSMUSG00000041775.8	ENSMUST00000118810.2	1350	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAACAGTTTAATTTAAG	NA	False	NA	-17	True	NA	NA	NA	138447986	138437606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_138438656_138447685
ENSMUST00000118816.6	chr5	-	1307	6	FSM	ENSMUSG00000035505.15	ENSMUST00000118816.6	1307	6	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_3	54.1833922895199	1470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGTGAGATAATTTC	NA	False	NA	-4	True	AATAAA	-16	NA	90371831	90362582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_90363035_90365375_90365484_90366770_90366896_90367218_90367383_90370089_90370191_90371474
ENSMUST00000118830.8	chr5	+	1014	5	FSM	ENSMUSG00000029462.19	ENSMUST00000118830.8	1014	5	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_1	833.067074130289	15029	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTTTCTTGAAAACCTGT	695	False	NA	17	True	AATAAA	-17	NA	122492447	122501349	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_122492540_122494856_122494869_122498075_122498268_122500098_122500335_122500867
ENSMUST00000118833.3	chr5	+	734	3	FSM	ENSMUSG00000015804.15	ENSMUST00000118833.3	734	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	958.5	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCTTAGACTGTTAGAGT	7406	False	NA	61	True	NA	NA	NA	45677644	45682979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_45677827_45679777_45679845_45682494
ENSMUST00000118875.8	chr6	-	1420	7	FSM	ENSMUSG00000057666.19	ENSMUST00000118875.8	1420	7	0	0	0	0	multi-exon	FALSE	canonical	3	6089	junction_1	1931.60920967179	269289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142736	125138816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142514
ENSMUST00000118882.2	chr5	-	1984	3	FSM	ENSMUSG00000044681.20	ENSMUST00000118882.2	1984	3	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	2	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTGAAACTTGCATGAAT	NA	False	NA	-6	True	ATTAAA	-17	NA	28415020	28407446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_28408435_28412284_28412382_28414121
ENSMUST00000118885.8	chr16	+	1392	6	FSM	ENSMUSG00000004070.16	ENSMUST00000118885.8	1392	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	156.624391459313	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGCCTCTGCCTAACAGC	NA	False	NA	10	True	AATAAA	-11	NA	4574766	4584109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_4575035_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
ENSMUST00000118898.8	chr10	-	2168	10	FSM	ENSMUSG00000020069.17	ENSMUST00000118898.8	2168	10	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_6	104.074166337115	1832	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTCTGTCCTAGAATAT	5781	False	NA	-15	True	AATAAA	-15	NA	62859673	62850442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864_62854005_62854538_62854678_62855171_62855307_62859498
ENSMUST00000118902.8	chr4	-	1887	10	FSM	ENSMUSG00000032897.18	ENSMUST00000118902.8	1887	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	134.081235740792	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	-1	True	AATAAA	-20	NA	120688769	120614634	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120688637
ENSMUST00000118924.2	chrX	+	621	1	FSM	ENSMUSG00000082035.2	ENSMUST00000118924.2	621	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43580	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-30	NA	95528464	95529085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_95528500_95529100
ENSMUST00000118927.8	chr7	+	2410	17	FSM	ENSMUSG00000030471.18	ENSMUST00000118927.8	2410	17	0	0	0	0	multi-exon	TRUE	canonical	3	240	junction_5	25.4348893009189	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTAGTTTCTAATGCTTC	NA	False	NA	9	True	AATAAA	-20	NA	48438750	48477188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_48438886_48445648_48445795_48449576_48449700_48451054_48451133_48452663_48452809_48454097_48454163_48454937_48455101_48455316_48455443_48458540_48458675_48461072_48461174_48465199_48465325_48466167_48466231_48466893_48466988_48468384_48468469_48472317_48472476_48474381_48474480_48476616
ENSMUST00000118976.9	chr7	-	2175	14	FSM	ENSMUSG00000041375.20	ENSMUST00000118976.10	2175	14	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	66.2157134678708	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTTTGAACTGTGCTGC	NA	False	NA	-8	True	ATTAAA	-14	NA	16020715	16007969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_16008342_16009180_16009301_16009662_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
ENSMUST00000119002.2	chr3	-	568	4	FSM	ENSMUSG00000028062.16	ENSMUST00000119002.2	568	4	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_3	1254.14043161929	4446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTCTCACCTGCTTT	1142	False	NA	-7	True	AATAAA	-13	NA	88460166	88457126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460036
ENSMUST00000119003.2	chr8	+	2920	4	FSM	ENSMUSG00000066880.16	ENSMUST00000119003.2	2920	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	7.78888096369861	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTAGTGTTCTATTGCTGT	NA	False	NA	29	True	AATAAA	-17	NA	72676695	72688473	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_72676817_72682045_72682173_72682981_72683043_72685862
ENSMUST00000119023.8	chr16	+	1048	9	FSM	ENSMUSG00000039200.17	ENSMUST00000119023.8	1048	9	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	24.2474225434375	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGAAATTACAGACTTGTT	NA	False	NA	NA	False	AGTAAA	-25	NA	10010769	10055152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029
ENSMUST00000119031.8	chr2	+	2477	11	FSM	ENSMUSG00000027259.16	ENSMUST00000119031.8	2477	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	26.5369553641709	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCTTGAATTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	120970978	120987159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_120971091_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
ENSMUST00000119041.8	chr7	-	2979	7	FSM	ENSMUSG00000030452.17	ENSMUST00000119041.8	2979	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	81.5127801840505	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55611993	55581034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55611934
ENSMUST00000119047.8	chr5	+	726	5	FSM	ENSMUSG00000067365.12	ENSMUST00000119047.8	726	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	95.0167748347627	1221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCTTTTTATACTATTTA	NA	False	NA	11	True	NA	NA	NA	38417727	38425251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_38417837_38419340_38419483_38422155_38422315_38424522_38424629_38425041
ENSMUST00000119052.2	chr11	-	395	1	FSM	ENSMUSG00000082110.2	ENSMUST00000119052.2	395	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2319	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATCACATGAAAGACTGAAA	NA	False	NA	NA	False	NA	NA	NA	78476381	78475986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_78476000_78476400
ENSMUST00000119149.8	chr2	-	1458	4	FSM	ENSMUSG00000078880.11	ENSMUST00000119149.8	1458	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	105.749179140497	1101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATCAGTGTAAGAAAGAT	NA	False	NA	NA	False	NA	NA	NA	176328136	176315986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_176317159_176317363_176317491_176324514_176324570_176328032
ENSMUST00000119158.8	chr3	+	1090	8	FSM	ENSMUSG00000027940.19	ENSMUST00000119158.8	1090	8	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_4	1700.12620179821	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGTTGTAACTGCTTCATC	NA	False	NA	NA	False	AATAAA	-17	NA	89987021	90006090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89996354_89996431_89997103_89997167_89997316_89997387_90005681
ENSMUST00000119190.2	chrX	+	1585	2	FSM	ENSMUSG00000047797.15	ENSMUST00000119190.2	1585	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGTTTTGAGTGTTGAA	NA	False	NA	NA	False	ATTAAA	-22	NA	100427341	100429235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_100427449_100427757
ENSMUST00000119193.2	chr17	-	1034	5	FSM	ENSMUSG00000083534.2	ENSMUST00000119193.2	1034	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	77.7700938664729	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTATCTGAGGGTTTACAT	NA	False	NA	NA	False	NA	NA	NA	37282288	37280086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_37280210_37280331_37280614_37281212_37281490_37281732_37282006_37282209
ENSMUST00000119211.8	chr12	+	2926	16	FSM	ENSMUSG00000035293.14	ENSMUST00000119211.8	2926	16	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_11	51.696120636745	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATCTCATAAATCAGAGAT	NA	False	NA	NA	False	AATAAA	-18	NA	51395070	51420050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_51395228_51398187_51398229_51400386_51400485_51400582_51400685_51402663_51402789_51403809_51403976_51406524_51406632_51407713_51407831_51409968_51410094_51410199_51410330_51410734_51410804_51412037_51412343_51414557_51414740_51415828_51416002_51418342_51418534_51419212
ENSMUST00000119273.2	chr16	-	778	4	FSM	ENSMUSG00000022706.17	ENSMUST00000119273.2	778	4	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	827.835061403471	1174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGAGTATCTGTCTTTTG	NA	False	NA	-24	True	AATAAA	-7	NA	18695289	18690975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_18691413_18692286_18692446_18694073_18694187_18695220
ENSMUST00000119274.3	chr17	-	3354	14	FSM	ENSMUSG00000024006.18	ENSMUST00000119274.3	3354	14	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_13	173.563487011723	946	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTGGATTTCTTTTAT	NA	False	NA	2	True	AATAAA	-21	NA	29226969	29189853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219119_29226684
ENSMUST00000119278.8	chr7	-	2394	9	FSM	ENSMUSG00000038187.15	ENSMUST00000119278.8	2394	9	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_7	50.6814500088543	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCTGACCAACTTTATGA	NA	False	NA	-16	True	AATAAA	-17	NA	112968599	112914849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112968078_112968166_112968405
ENSMUST00000119307.8	chr4	+	889	4	FSM	ENSMUSG00000042198.13	ENSMUST00000119307.8	889	4	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_3	14.7271480229163	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTTTCTATAACTTGA	1	True	NA	6	True	NA	NA	NA	3938919	3943504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_3939527_3941245_3941312_3942720_3942820_3943387
ENSMUST00000119353.9	chr8	+	1720	9	FSM	ENSMUSG00000019428.17	ENSMUST00000119353.9	1720	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	528.343741682439	2734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTCTAGGCCTCTTTC	NA	False	NA	27	True	AATAAA	-19	NA	70980373	70987978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984174_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ENSMUST00000119379.2	chr6	+	455	4	FSM	ENSMUSG00000002416.14	ENSMUST00000119379.2	455	4	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_3	851.269770532363	13542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTATGTTTCTGATGACAA	NA	False	NA	30	True	ATTAAA	-39	NA	39569516	39576405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_39569647_39573384_39573530_39575199_39575300_39576325
ENSMUST00000119426.2	chr9	-	912	4	FSM	ENSMUSG00000032271.14	ENSMUST00000119426.2	912	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	21.5458168149231	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCAGTGCTCACTGTATG	NA	False	NA	10	True	ATTAAA	-33	NA	48516453	48503176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_48503483_48503613_48503663_48514653_48514862_48516104
ENSMUST00000119438.2	chr2	-	645	1	FSM	ENSMUSG00000080859.2	ENSMUST00000119438.2	645	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28707	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTCAATAGTTCTCTCC	NA	False	NA	NA	False	NA	NA	NA	105385190	105384545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_105384500_105385200
ENSMUST00000119464.2	chr16	+	2878	8	FSM	ENSMUSG00000022900.15	ENSMUST00000119464.2	2878	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	133.242452020398	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAATTCCTGTGTTTGGC	NA	False	NA	6	True	ATTAAA	-18	NA	36514399	36547103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_36514577_36528611_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543001_36545878
ENSMUST00000119472.8	chr9	-	1190	6	FSM	ENSMUSG00000032470.18	ENSMUST00000119472.8	1190	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	193.993195756965	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTGGCGAAGCCCCAAG	NA	False	NA	28	True	ATTAAA	-15	NA	99307949	99270031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99307829
ENSMUST00000119477.2	chrX	+	1239	6	FSM	ENSMUSG00000031226.14	ENSMUST00000119477.2	1239	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	564.946723151838	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGGCCAGAGTTCCTTTT	NA	False	NA	5	True	AATAAA	-20	NA	104123366	104160696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104159919
ENSMUST00000119480.2	chr4	+	527	6	FSM	ENSMUSG00000057572.16	ENSMUST00000119480.2	527	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	264.862530381328	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGTTTGAGAGGATGTGAT	NA	False	NA	-81	True	TTTAAA	-45	NA	129229804	129240728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129229933_129234520_129234546_129235269_129235392_129235533_129235617_129238004_129238042_129240596
ENSMUST00000119559.8	chr1	-	1385	10	FSM	ENSMUSG00000026000.17	ENSMUST00000119559.8	1385	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	165.875529714376	607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGAGTTTTTATTTCC	NA	False	NA	-5	True	AATGAA	-16	NA	67077993	67042533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653_67077751_67077930
ENSMUST00000119579.3	chr5	+	636	2	FSM	ENSMUSG00000015804.15	ENSMUST00000119579.3	636	2	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	0	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTGTTGTTGTTTGTA	7398	False	NA	22	True	AGTAAA	-11	NA	45677636	45682940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_45677827_45682494
ENSMUST00000119604.8	chr5	+	1208	4	FSM	ENSMUSG00000034211.15	ENSMUST00000119604.8	1208	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	359.259732722101	1919	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGGCCTGTTTTGTTGT	773	False	NA	NA	False	NA	NA	NA	129792579	129795755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129792614_129792747_129793006_129793790_129793931_129794979
ENSMUST00000119633.8	chr19	+	2267	8	FSM	ENSMUSG00000024993.16	ENSMUST00000119633.8	2267	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	141.985771060601	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACTACTTGATGTC	NA	False	NA	NA	False	ATTAAA	-13	NA	60800028	60824665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_60800112_60803029_60803247_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
ENSMUST00000119694.3	chr19	+	1980	14	FSM	ENSMUSG00000083282.4	ENSMUST00000119694.3	1980	14	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_8	8.77530154238379	235	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGTAAGTGCTTAGTC	NA	False	NA	10	True	AATAAA	-21	NA	4905157	4910946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4905515_4905725_4905825_4906097_4906183_4906274_4906337_4906539_4906616_4907997_4908112_4908214_4908361_4908443_4908541_4908619_4908701_4909430_4909551_4909629_4909695_4909785_4909877_4910277_4910337_4910418
ENSMUST00000119698.8	chr8	+	1799	9	FSM	ENSMUSG00000019428.17	ENSMUST00000119698.8	1799	9	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_1	286.852068800279	1087	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTTTCTAGGCCTCTTT	NA	False	NA	26	True	AATAAA	-18	NA	70980495	70987977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70980686_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
ENSMUST00000119718.8	chr4	+	2498	5	FSM	ENSMUSG00000078502.11	ENSMUST00000119718.8	2498	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	22.5111083689809	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTTGCTTTGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	145311772	145351911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_145311905_145343687_145343746_145347127_145347255_145348721_145349454_145350462
ENSMUST00000119736.8	chr8	+	1837	15	FSM	ENSMUSG00000031901.13	ENSMUST00000119736.8	1837	15	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_4	52.5452186216786	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCCTGACATAATTTTTC	NA	False	NA	33	True	AATAAA	-33	NA	106738138	106780472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
ENSMUST00000119780.2	chr6	+	471	1	FSM	ENSMUSG00000055093.11	ENSMUST00000119780.2	471	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10935	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTGTATGCGTTAATAAAA	NA	False	NA	-44	True	NA	NA	NA	122433862	122434333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_122433900_122434300
ENSMUST00000119814.3	chr10	-	682	3	FSM	ENSMUSG00000020069.17	ENSMUST00000119814.3	682	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	86.5	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGATGAGACTTGGTTTT	5828	False	NA	NA	False	AATAAA	-34	NA	62859626	62853585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_62854005_62855171_62855307_62859498
ENSMUST00000119822.2	chr2	+	798	1	FSM	ENSMUSG00000081992.2	ENSMUST00000119822.2	798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15671	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCCAGATTTTTAATGG	NA	False	NA	NA	False	NA	NA	NA	34455010	34455808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_34455000_34455800
ENSMUST00000119827.8	chr10	-	1253	9	FSM	ENSMUSG00000019942.14	ENSMUST00000119827.8	1253	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	961.092444825158	8387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTCTGTATATGTGCA	NA	False	NA	-28	True	TTTAAA	-1	NA	69188733	69174153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69187421_69187513_69188665
ENSMUST00000119865.8	chr3	+	1367	8	FSM	ENSMUSG00000027601.14	ENSMUST00000119865.8	1367	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	404.476633365607	1320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATGGCATCAGAGAGGA	NA	False	NA	NA	False	ACTAAA	-21	NA	19241510	19273534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_19241551_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
ENSMUST00000119945.8	chr17	+	1018	7	FSM	ENSMUSG00000034729.17	ENSMUST00000119945.8	1018	7	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_2	381.394116659162	6704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTGGTTTTGTTTACT	7141	False	NA	7	True	NA	NA	NA	47679815	47689606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_47679880_47683351_47683417_47683497_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
ENSMUST00000119950.2	chr2	+	379	3	FSM	ENSMUSG00000067847.14	ENSMUST00000119950.2	379	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	474	6683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAGTCTATTTTTACCTA	6552	False	NA	14	True	AATAAA	-19	NA	155986159	155987714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_155986201_155986364_155986510_155987521
ENSMUST00000119953.2	chr16	+	1945	9	Antisense	novelGene_ENSMUSG00000005846.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6355	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGCGAGGGGGAGGGG	1893	False	NA	NA	False	NA	NA	NA	11010833	11021195	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr16_+_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
ENSMUST00000119968.8	chr3	+	1339	6	FSM	ENSMUSG00000019710.14	ENSMUST00000119968.8	1339	6	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_1	165.189103756876	4846	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAACAGAAGTCTTAAAAG	NA	False	NA	16	True	AATAAA	-18	NA	87826812	87830969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUST00000119972.4	chr1	-	1051	1	FSM	ENSMUSG00000081984.4	ENSMUST00000119972.4	1051	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCACTGTTATGTTCTAG	NA	False	NA	NA	False	ATTAAA	-15	NA	88133504	88132453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_88132500_88133500
ENSMUST00000119976.8	chr8	+	2136	9	FSM	ENSMUSG00000046295.14	ENSMUST00000119976.8	2136	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	30.5366071298041	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTACTTTGTCTCCATGTC	NA	False	NA	18	True	NA	NA	NA	71858653	71862548	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859856_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
ENSMUST00000119985.2	chr5	+	859	3	FSM	ENSMUSG00000034211.15	ENSMUST00000119985.2	859	3	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_1	192.5	2201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTTTTGATAATGACATA	834	False	NA	-10	True	AAGAAA	-35	NA	129792640	129795511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129792828_129793790_129793931_129794979
ENSMUST00000120041.8	chr14	-	2164	6	FSM	ENSMUSG00000002320.16	ENSMUST00000120041.8	2164	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	125.802384715076	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	5295	False	NA	51	True	AATAAA	-19	NA	55880708	55873421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880636
ENSMUST00000120095.8	chr4	-	2549	11	FSM	ENSMUSG00000028391.17	ENSMUST00000120095.8	2549	11	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_10	54.6457683631587	810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAATAAATAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	62389124	62370868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62388948
ENSMUST00000120149.2	chr1	-	891	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4429	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGTTAACCTAATTAAACA	NA	False	NA	NA	False	NA	NA	NA	86837405	86836514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_86836500_86837400
ENSMUST00000120201.8	chrX	-	1859	7	FSM	ENSMUSG00000031310.17	ENSMUST00000120201.8	1859	7	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_4	20.0637871688163	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTCAGCCTCTCCTTCCC	NA	False	NA	-1	True	NA	NA	NA	100463415	100458535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463303
ENSMUST00000120213.9	chr8	-	2200	11	FSM	ENSMUSG00000031667.17	ENSMUST00000120213.9	2200	11	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_9	146.200581394193	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATTTTTTTAACTTCCAG	NA	False	NA	-3	True	AATAAA	-17	NA	91860625	91850126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91858550_91858632_91860527
ENSMUST00000120240.8	chr6	+	1195	9	FSM	ENSMUSG00000029993.17	ENSMUST00000120240.8	1195	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1184.03386248029	11860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	False	NA	25	True	AATAAA	-31	NA	86986217	87005443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_86986372_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997825_87000109_87000171_87002467_87002643_87005276
ENSMUST00000120272.8	chr3	+	3323	12	FSM	ENSMUSG00000028175.16	ENSMUST00000120272.8	3323	12	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_11	13.4778667659976	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTTATTTTTTTCAATC	NA	False	NA	NA	False	AATAAA	-20	NA	159201069	159235592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159228162_159228994_159229413_159229587_159232167_159232345_159233580_159233767_159234635
ENSMUST00000120281.8	chr10	-	1793	9	FSM	ENSMUSG00000000901.18	ENSMUST00000120281.8	1793	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	51.1639521538358	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	5083	False	NA	-3	True	ATTAAA	-17	NA	75768309	75759055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_75759325_75759792_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
ENSMUST00000120299.4	chr7	-	722	4	FSM	ENSMUSG00000040231.17	ENSMUST00000120299.4	722	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	18.0616229121921	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACAGCTAAACAGCCTGT	NA	False	NA	-64	True	NA	NA	NA	45546094	45536329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45536550_45538035_45538274_45545114_45545316_45546031
ENSMUST00000120338.2	chr7	-	456	1	FSM	ENSMUSG00000081431.2	ENSMUST00000120338.2	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2976	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTGTTGTGTGCACAAGC	NA	False	NA	NA	False	NA	NA	NA	133340663	133340207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_133340200_133340700
ENSMUST00000120344.8	chr10	+	1655	9	FSM	ENSMUSG00000001786.15	ENSMUST00000120344.8	1655	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	78.2747564672034	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGACTTGACTTTTTT	NA	False	NA	10	True	AGTAAA	-13	NA	85858052	85884187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_85858195_85860431_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
ENSMUST00000120349.8	chr8	-	2153	10	FSM	ENSMUSG00000031667.17	ENSMUST00000120349.8	2153	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	137.062930486621	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATTTTTTTAACTTCCAG	NA	False	NA	-3	True	AATAAA	-17	NA	91861093	91850126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857777_91860957
ENSMUST00000120356.8	chrX	+	1520	6	FSM	ENSMUSG00000001127.13	ENSMUST00000120356.8	1520	6	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	64.9935381403413	722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCTTTCTCCAACTATCT	6308	False	NA	NA	False	AATAAA	-12	NA	20714816	20719128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168
ENSMUST00000120364.2	chr5	+	575	3	FSM	ENSMUSG00000106943.3	ENSMUST00000120364.2	575	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	23.5	1985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTTCACTTGTTCTT	NA	False	NA	19	True	AATAAA	-21	NA	74253737	74254998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_74253801_74254018_74254081_74254548
ENSMUST00000120367.8	chr9	-	2885	11	FSM	ENSMUSG00000031969.17	ENSMUST00000120367.8	2885	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	75.0053331437172	784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCATGTTACGTGTATG	9231	False	NA	NA	False	AGTAAA	-34	NA	26910862	26885430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901489_26901874_26901989_26902535_26902706_26903455_26903557_26910689
ENSMUST00000120377.8	chr3	-	2021	10	FSM	ENSMUSG00000028063.16	ENSMUST00000120377.8	2021	10	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_5	22.6377811589932	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGCCCTGGCCTTTCT	NA	False	NA	-1	True	ATTAAA	-19	NA	88410614	88390511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88390721_88391133_88391254_88391353_88391462_88391921_88392145_88392233_88392455_88393510_88393637_88393766_88393938_88394114_88394241_88395581_88395739_88410054
ENSMUST00000120389.8	chrX	-	2415	4	FSM	ENSMUSG00000046032.17	ENSMUST00000120389.8	2415	4	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	23.8094285712381	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100266155	100255564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_100257471_100258006_100258132_100259088_100259185_100265867
ENSMUST00000120397.8	chr3	+	1172	10	FSM	ENSMUSG00000028167.16	ENSMUST00000120397.8	1172	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	10.4880884817015	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTAGTTTTTTTTCTTAA	NA	False	NA	21	True	AATAAA	-31	NA	134986981	135010187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_134987130_134991275_134991429_134994021_134994101_134995315_134995413_134996754_134996864_135000988_135001050_135002580_135002695_135006434_135006494_135007322_135007416_135009928
ENSMUST00000120447.8	chr1	-	2430	7	FSM	ENSMUSG00000026577.14	ENSMUST00000120447.8	2430	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	15.0738920727933	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATAAGGTGCTCATTTGT	NA	False	NA	-5	True	ATTAAA	-16	NA	164135058	164118957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715
ENSMUST00000120450.2	chr16	-	1865	11	FSM	ENSMUSG00000022962.16	ENSMUST00000120450.2	1865	11	0	0	0	0	multi-exon	FALSE	canonical	3	1247	junction_10	242.657701299588	1182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTTTGATTTTTTTTTT	NA	False	NA	-2	True	AATAAA	-22	NA	91443823	91430292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
ENSMUST00000120461.9	chr18	-	1741	14	FSM	ENSMUSG00000041891.17	ENSMUST00000120461.9	1741	14	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	258.280362323832	1536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTGTCTGACAACCTG	NA	False	NA	NA	False	NA	NA	NA	66135692	66115634	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_66115782_66116891_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
ENSMUST00000120488.3	chr16	+	2596	7	FSM	ENSMUSG00000022750.19	ENSMUST00000120488.3	2596	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	179.822520527572	1311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCTACAGTCTGAGTTT	NA	False	NA	19	True	AATAAA	-28	NA	17580654	17611246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_17580719_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
ENSMUST00000120542.8	chr10	+	1044	6	FSM	ENSMUSG00000006732.15	ENSMUST00000120542.8	1044	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	158.453273869617	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	126877826	126881484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880865_126880997_126881147
ENSMUST00000120564.2	chr1	+	991	4	FSM	ENSMUSG00000039323.19	ENSMUST00000120564.2	991	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	1673.33041168404	4916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAAGTGTGTGTCTTAC	573	False	NA	11	True	ATTAAA	-11	NA	72864480	72891626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_72864634_72888244_72888472_72888722_72888864_72891156
ENSMUST00000120595.8	chr7	+	2255	19	FSM	ENSMUSG00000040811.16	ENSMUST00000120595.8	2255	19	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	24.7224719088515	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAGTCTGGTCTATT	NA	False	NA	25	True	AATACA	-17	NA	18915094	18940407	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_18915149_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
ENSMUST00000120653.8	chr8	+	1446	8	FSM	ENSMUSG00000031576.17	ENSMUST00000120653.8	1446	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	3.10365156891435	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAAGTTCATTGCTCTCT	NA	False	NA	NA	False	AATAAA	-20	NA	26401707	26427961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_26401778_26403611_26403837_26408316_26408504_26409611_26409690_26411447_26411588_26422267_26422463_26424432_26424546_26427523
ENSMUST00000120690.2	chr9	-	3627	6	FSM	ENSMUSG00000032328.13	ENSMUST00000120690.2	3627	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	180.204994381399	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCGTGCTGTTTATGTGTC	NA	False	NA	-9	True	AATAAA	-14	NA	79700789	79676224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_79678762_79681374_79681585_79682383_79682534_79683434_79683523_79684505_79684614_79700255
ENSMUST00000120697.8	chr3	+	1475	9	FSM	ENSMUSG00000028049.16	ENSMUST00000120697.8	1475	9	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_2	249.13701049824	1792	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCATTTCCTGTATCT	NA	False	NA	18	True	ATTAAA	-22	NA	89084796	89090072	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89084965_89085296_89085375_89086398_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
ENSMUST00000120699.8	chr11	+	746	4	FSM	ENSMUSG00000020843.16	ENSMUST00000120699.8	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	120.856204731996	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGGAGGTGGTATGGCAGA	NA	False	NA	-49	True	NA	NA	NA	76297777	76305155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_76297970_76300467_76300665_76301952_76302026_76304871
ENSMUST00000120725.2	chr8	+	1641	9	FSM	ENSMUSG00000046295.14	ENSMUST00000120725.2	1641	9	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	33.431833632034	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGACAGTGTGTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	71858667	71862127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859916_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
ENSMUST00000120732.8	chr4	+	711	6	FSM	ENSMUSG00000042198.13	ENSMUST00000120732.8	711	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	192.067279878693	4693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGGGGTTTTTTTTTG	-5	True	NA	30	True	ATTAAA	-23	NA	3938913	3943528	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720_3942820_3942987_3943027_3943387
ENSMUST00000120762.2	chrX	-	750	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6196	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTTTAAGAGCAACAAATA	NA	False	NA	NA	False	NA	NA	NA	68649851	68649101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_68649100_68649900
ENSMUST00000120794.8	chr4	+	1884	17	FSM	ENSMUSG00000029034.10	ENSMUST00000120794.8	1884	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	240.176465073079	1278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTATCCACCAGGAATCC	9960	False	NA	NA	False	NA	NA	NA	155954002	155973142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969620_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
ENSMUST00000120805.8	chr3	-	551	5	FSM	ENSMUSG00000027679.14	ENSMUST00000120805.8	551	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_4	1441.31155549381	6825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAAGGATTTCAAGAATT	NA	False	NA	26	True	NA	NA	NA	34135459	34131472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232_34134307_34135334
ENSMUST00000120847.8	chr5	+	3929	3	FSM	ENSMUSG00000046079.17	ENSMUST00000120847.8	3929	3	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	122	1696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTAGTGGTTCACAACCTT	4891	False	NA	19	True	AATAAA	-30	NA	105848654	105963076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_105848952_105880095_105880241_105959589
ENSMUST00000120867.8	chr5	-	1234	7	FSM	ENSMUSG00000015806.13	ENSMUST00000120867.8	1234	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	385.068680742655	1112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	False	NA	-19	True	AATAAA	-15	NA	45607307	45591394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607223
ENSMUST00000120879.8	chr7	+	2141	7	FSM	ENSMUSG00000030990.19	ENSMUST00000120879.8	2141	7	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	65.7809918509054	614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	NA	False	NA	16	True	AATAAA	-23	NA	101859568	101887774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_101859799_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
ENSMUST00000120912.8	chr5	+	2345	10	FSM	ENSMUSG00000029247.18	ENSMUST00000120912.8	2345	10	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	1026.8195172413	6387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGCTGTGTGGTCTATA	327	False	NA	19	True	ATTAAA	-22	NA	77099194	77115356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_77099516_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
ENSMUST00000120928.2	chr11	+	1402	4	FSM	ENSMUSG00000048277.16	ENSMUST00000120928.2	1402	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	286.604256772296	983	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTTGTGCTGGGTGGCGC	NA	False	NA	14	True	AATAAA	-14	NA	117700521	117705109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_117700630_117703374_117703523_117703871_117704012_117704103
ENSMUST00000120934.8	chr18	-	1497	10	FSM	ENSMUSG00000024539.18	ENSMUST00000120934.8	1497	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	167.715440958197	1601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTGGTTTGTGTGTGTG	NA	False	NA	-14	True	ATTAAA	-19	NA	67857643	67798580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_67798945_67805736_67805839_67808789_67808900_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
ENSMUST00000120938.2	chr15	-	390	1	FSM	ENSMUSG00000083380.2	ENSMUST00000120938.2	390	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7469	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGGCAAGAATGACTATT	NA	False	NA	NA	False	NA	NA	NA	73681745	73681355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_73681400_73681700
ENSMUST00000120959.8	chr2	-	1458	4	FSM	ENSMUSG00000078881.11	ENSMUST00000120959.8	1458	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	108.739239569818	1417	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATCAGTGTAAGAAAGAT	NA	False	NA	NA	False	NA	NA	NA	176178566	176166422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_176167595_176167799_176167927_176174950_176175006_176178462
ENSMUST00000120963.8	chr5	-	3694	16	FSM	ENSMUSG00000055923.17	ENSMUST00000120963.8	3694	16	0	0	0	0	multi-exon	TRUE	canonical	3	29	junction_15	18.6828501275605	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGGTCCTTTCCA	NA	False	NA	2	True	ATTAAA	-21	NA	77053361	77023781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113_77030910_77031932_77032049_77033976_77034170_77035034_77035208_77035876_77035984_77036439_77036682_77039449_77039643_77044223_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053269
ENSMUST00000120992.8	chr3	-	2233	13	FSM	ENSMUSG00000027809.15	ENSMUST00000120992.8	2233	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	30.1619471446317	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGAGCATTTATTTATTTA	3750	False	NA	-15	True	AATAAA	-15	NA	79536004	79511109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_79511473_79512211_79512434_79512936_79513120_79517105_79517275_79519218_79519363_79520928_79521070_79522306_79522454_79523230_79523309_79525613_79525733_79526145_79526228_79530044_79530275_79530847_79530986_79535787
ENSMUST00000121001.2	chr5	-	555	1	FSM	ENSMUSG00000081855.5	ENSMUST00000121001.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3943	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAAGGC	NA	False	NA	NA	False	AAGAAA	-34	NA	22818180	22817625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_22817600_22818200
ENSMUST00000121004.3	chr7	+	1840	9	FSM	ENSMUSG00000030815.12	ENSMUST00000121004.3	1840	9	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	32.8954309137303	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCATGTCTGCTGTCTA	NA	False	NA	24	True	AATAAA	-25	NA	127172700	127182477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_127173139_127176706_127176883_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUST00000121034.8	chr3	+	2035	8	FSM	ENSMUSG00000027900.16	ENSMUST00000121034.8	2035	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	45.9937884004848	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCTTGTCATGAAAATGA	NA	False	NA	NA	False	AATAAA	-14	NA	106455179	106482161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_106455237_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
ENSMUST00000121095.8	chr13	+	798	3	FSM	ENSMUSG00000035509.18	ENSMUST00000121095.8	798	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	2	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTTTCTCACTGGGCTG	NA	False	NA	NA	False	AATAAA	-26	NA	56670284	56675280	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_56670436_56671322_56671417_56674727
ENSMUST00000121110.8	chr4	+	381	4	FSM	ENSMUSG00000042198.13	ENSMUST00000121110.8	381	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	200.984244821993	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGGGGTTTTTTTTTG	NA	False	NA	30	True	ATTAAA	-23	NA	3938887	3943528	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_3938963_3941245_3941312_3942720_3942820_3943387
ENSMUST00000121185.8	chr11	-	911	4	FSM	ENSMUSG00000020738.17	ENSMUST00000121185.8	911	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	1864.33300554261	5079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115426643	115413927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426604
ENSMUST00000121204.8	chr9	-	1290	11	FSM	ENSMUSG00000061559.16	ENSMUST00000121204.8	1290	11	0	0	0	0	multi-exon	FALSE	canonical	3	544	junction_10	185.351584832717	6525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACCTGCATTTGTGAAC	5421	False	NA	-8	True	AATAAA	-14	NA	54641803	54624447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637946_54638670_54638722_54641652
ENSMUST00000121210.8	chr4	+	548	4	FSM	ENSMUSG00000042198.13	ENSMUST00000121210.8	548	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	176.426251510999	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTGAGCACTGGATCCAG	-5	True	NA	NA	False	CATAAA	-4	NA	3938913	3943050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_3938963_3939423_3939527_3941245_3941312_3942720
ENSMUST00000121220.2	chr6	-	197	1	FSM	ENSMUSG00000082118.2	ENSMUST00000121220.2	197	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	185	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATTTCAATCAGTCATAAA	NA	False	NA	NA	False	NA	NA	NA	34787762	34787565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_34787600_34787800
ENSMUST00000121228.2	chr11	-	704	3	FSM	ENSMUSG00000057534.14	ENSMUST00000121228.2	704	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	27	1450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTCTCGCGTCATACT	6805	False	NA	0	True	AATAAA	-26	NA	88857757	88855483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_88856100_88857540_88857603_88857731
ENSMUST00000121231.8	chr3	-	2121	9	FSM	ENSMUSG00000040774.16	ENSMUST00000121231.8	2121	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	80.7074191137345	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTTTTTTCTCAATTTT	NA	False	NA	-5	True	AATAAA	-16	NA	106454898	106410298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106438452_106438595_106440670_106440819_106446505_106446913_106454738
ENSMUST00000121292.8	chr16	+	550	3	FSM	ENSMUSG00000039209.13	ENSMUST00000121292.8	550	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	241	5269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTCTGTGTTACAACTT	NA	False	NA	29	True	AATAAA	-29	NA	9988089	9992494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_9988189_9988278_9988356_9992120
ENSMUST00000121304.2	chr10	-	1622	9	FSM	ENSMUSG00000000902.14	ENSMUST00000121304.2	1622	9	0	0	0	0	multi-exon	FALSE	canonical	3	799	junction_7	118.779206934547	2899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTTCTGTGCAGTAGCA	6864	False	NA	-10	True	AATAAA	-12	NA	75757448	75732610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752633_75752746_75757136
ENSMUST00000121321.2	chr19	-	642	1	FSM	ENSMUSG00000080885.2	ENSMUST00000121321.2	642	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7839	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGCTTCAATAGTTCTC	NA	False	NA	NA	False	AATATA	-45	NA	37273195	37272553	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_37272600_37273200
ENSMUST00000121360.8	chr6	-	1188	6	Antisense	novelGene_ENSMUSG00000029911.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17011	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTCACCGGACACGCAGA	NA	False	NA	NA	False	NA	NA	NA	40457929	40448401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr6_-_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
ENSMUST00000121382.2	chr11	+	314	1	FSM	ENSMUSG00000080823.2	ENSMUST00000121382.2	314	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20350	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCAATCTTTAACTTCTG	NA	False	NA	NA	False	NA	NA	NA	86076154	86076468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_86076200_86076500
ENSMUST00000121393.9	chr2	-	4402	5	FSM	ENSMUSG00000078899.10	ENSMUST00000121393.9	4402	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	105.8828952192	1429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	175179990	175163747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_175167842_175168998_175169060_175169264_175169392_175176415_175176471_175179925
ENSMUST00000121416.8	chr5	+	3792	8	FSM	ENSMUSG00000041264.17	ENSMUST00000121416.8	3792	8	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	82.9762690441658	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTTTTGTTGGTTTCAT	NA	False	NA	10	True	ATTAAA	-10	NA	149121159	149152238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
ENSMUST00000121442.2	chr4	-	491	3	FSM	ENSMUSG00000040795.13	ENSMUST00000121442.2	491	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	58	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGACTTGTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	129512889	129511891	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_129512156_129512284_129512429_129512806
ENSMUST00000121451.2	chr11	+	379	1	FSM	ENSMUSG00000081631.2	ENSMUST00000121451.2	379	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	921	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACATTGGTCTGCAATGT	NA	False	NA	NA	False	NA	NA	NA	14112078	14112457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_14112100_14112500
ENSMUST00000121497.2	chr1	+	414	1	FSM	ENSMUSG00000058603.11	ENSMUST00000121497.2	414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9356	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCACACGCCCGAAGCAA	NA	False	NA	NA	False	NA	NA	NA	127966305	127966719	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_127966300_127966700
ENSMUST00000121532.8	chr7	-	915	6	FSM	ENSMUSG00000060538.15	ENSMUST00000121532.8	915	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	16.451139778143	845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGTGTAAGGTACTTAC	6242	False	NA	-2	True	AATAAA	-14	NA	126497425	126485391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126496197_126496397_126497395
ENSMUST00000121542.2	chr17	-	1521	8	FSM	ENSMUSG00000073436.12	ENSMUST00000121542.2	1521	8	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_1	4.68606270481621	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGGCATTTGTGAAGGC	1864	False	NA	NA	False	GATAAA	-16	NA	25114061	25111125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25111658_25111728_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104_25113198_25113544_25113682_25113794
ENSMUST00000121564.8	chr9	-	1962	10	FSM	ENSMUSG00000050471.18	ENSMUST00000121564.8	1962	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	79.4592837733753	684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGGCAATTTCTTTATGA	6392	False	NA	NA	False	TATAAA	-14	NA	35179073	35128315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35155909_35156003_35156436_35156492_35178332_35178408_35179018
ENSMUST00000121566.8	chr4	-	3748	14	FSM	ENSMUSG00000037443.14	ENSMUST00000121566.8	3748	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	115.31464545157	178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAACACTCCGGTTTCCT	NA	False	NA	NA	False	AATAAA	-7	NA	133914292	133857176	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_133858751_133859542_133859769_133861379_133861488_133864881_133864933_133866145_133866240_133875320_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881702_133882987_133883683_133894599_133894753_133900123_133900192_133914253
ENSMUST00000121623.8	chr8	-	884	7	FSM	ENSMUSG00000055553.17	ENSMUST00000121623.8	884	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	10409.9140993361	12503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAGTAATTGGTGTCTAG	NA	False	NA	-13	True	AATAAA	-19	NA	70975813	70960921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70968044_70968092_70971014_70971168_70972586_70972712_70975712
ENSMUST00000121651.8	chr4	+	620	5	FSM	ENSMUSG00000042198.13	ENSMUST00000121651.8	620	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	167.916645988419	1704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACATGTTTTGGGGTTT	-5	True	NA	23	True	ATTAAA	-16	NA	3938913	3943521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_3939132_3939423_3939527_3941245_3941312_3942720_3942820_3943387
ENSMUST00000121658.2	chr2	-	1000	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	406	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAACCCTGGACCACCCA	NA	False	NA	NA	False	NA	NA	NA	28824621	28823621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_28823600_28824600
ENSMUST00000121661.8	chr5	-	1056	5	FSM	ENSMUSG00000037822.13	ENSMUST00000121661.8	1056	5	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_4	163.329421721869	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGGTTTAGAATCCATT	NA	False	NA	NA	False	AATAAA	-19	NA	65650403	65607145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650283
ENSMUST00000121671.2	chr17	-	561	3	FSM	ENSMUSG00000023973.14	ENSMUST00000121671.2	561	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	258.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGGACAGTGTGCTCATA	NA	False	NA	NA	False	NA	NA	NA	47063121	47057912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_47058127_47058346_47058471_47062898
ENSMUST00000121673.8	chr8	+	1550	9	FSM	ENSMUSG00000047866.21	ENSMUST00000121673.8	1550	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	87.8634416296107	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTCTGGTCTCCAGTGG	NA	False	NA	NA	False	AATAAA	-13	NA	87378196	87443260	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_87378268_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
ENSMUST00000121703.3	chr16	-	609	5	FSM	ENSMUSG00000022604.19	ENSMUST00000121703.3	609	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	14.2653426176871	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAGTATCGAGTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	55755196	55744918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_55745043_55745331_55745434_55748083_55748243_55750828_55750972_55755115
ENSMUST00000121722.2	chr4	-	873	1	FSM	ENSMUSG00000082762.2	ENSMUST00000121722.2	873	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11061	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGTTTTTATATGAGAAAA	8313	False	NA	NA	False	NA	NA	NA	35202975	35202102	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_35202100_35203000
ENSMUST00000121750.2	chr16	-	2614	4	FSM	ENSMUSG00000065979.13	ENSMUST00000121750.2	2614	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	46.2625358386483	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATAAAATAAAAATAAA	NA	False	NA	-46	True	NA	NA	NA	11727286	11621590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_11623448_11646038_11646462_11705441_11705619_11727129
ENSMUST00000121783.7	chr8	-	1945	5	FSM	ENSMUSG00000015341.18	ENSMUST00000121783.7	1945	5	0	0	0	0	multi-exon	FALSE	canonical	3	1223	junction_2	41.2946727799119	3331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAACCCTCTCTTGTCT	NA	False	NA	-26	True	AGTAAA	-10	NA	23747037	23731368	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689
ENSMUST00000121813.8	chr5	+	868	3	FSM	ENSMUSG00000034211.15	ENSMUST00000121813.8	868	3	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	376	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGATTCTCTGAACTGAA	815	False	NA	39	True	AGTAAA	-34	NA	129792621	129795354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_129792975_129793790_129793931_129794979
ENSMUST00000121821.2	chr5	-	636	1	FSM	ENSMUSG00000084111.5	ENSMUST00000121821.2	636	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3750	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTGGAGAGTTGCA	NA	False	NA	NA	False	AAAAAG	-44	NA	92288788	92288152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92288200_92288800
ENSMUST00000121870.8	chr4	+	986	5	FSM	ENSMUSG00000028657.15	ENSMUST00000121870.8	986	5	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_2	15.8015030930605	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCTCGATGTAGTGGTAG	NA	False	NA	NA	False	AATAAA	-32	NA	122730038	122742768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225
ENSMUST00000121886.8	chr8	-	2259	5	FSM	ENSMUSG00000060427.16	ENSMUST00000121886.8	2259	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	33.7083075813663	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTATTACTTAGTACTC	NA	False	NA	-6	True	AATAAA	-23	NA	70078199	70063507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70065107_70066044_70066106_70066398_70066526_70071964_70072323_70078085
ENSMUST00000121903.2	chr6	+	1304	6	FSM	ENSMUSG00000047115.16	ENSMUST00000121903.2	1304	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	14.4360659460949	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATAGGGTCAGATTTTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	49344756	49366214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355537_49359896_49360014_49365750
ENSMUST00000121906.2	chr16	+	319	1	FSM	ENSMUSG00000081824.6	ENSMUST00000121906.2	319	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	935	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGGGGCAGCTGGAGGCC	NA	False	NA	NA	False	AATACA	-43	NA	42775993	42776312	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_42776000_42776300
ENSMUST00000121920.8	chr3	+	1115	6	FSM	ENSMUSG00000019710.14	ENSMUST00000121920.8	1115	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	351.330841230883	1274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTTAAAAGCTTTATAAAT	NA	False	NA	26	True	AATAAA	-28	NA	87826869	87830979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_87826959_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
ENSMUST00000122026.6	chr5	+	1668	11	FSM	ENSMUSG00000029199.12	ENSMUST00000122026.6	1668	11	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_10	33.1264244976726	2585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCGTGTGTGTATGTGT	6886	False	NA	48	True	AAAAAG	-11	NA	65548839	65566550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
ENSMUST00000122038.8	chr1	-	2850	14	FSM	ENSMUSG00000026019.16	ENSMUST00000122038.8	2850	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_13	257.719103084491	3780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACTGTCTAGGCTGATA	NA	False	NA	NA	False	AATAAA	-23	NA	60137305	60116026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137203
ENSMUST00000122062.2	chr11	+	346	1	FSM	ENSMUSG00000081766.4	ENSMUST00000122062.2	346	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16102	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTGAGGGCCCCACAGCC	NA	False	NA	NA	False	NA	NA	NA	88863482	88863828	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_88863500_88863800
ENSMUST00000122063.8	chr14	+	3088	26	FSM	ENSMUSG00000040040.17	ENSMUST00000122063.8	3088	26	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_12	10.0195009855781	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTGAGGCTAATGACTTC	NA	False	NA	13	True	AATAAA	-15	NA	57661518	57755393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_57661645_57667994_57668091_57672251_57672315_57674683_57674741_57675698_57675753_57676322_57676387_57677162_57677233_57678387_57678479_57679334_57679440_57681811_57681915_57683021_57683137_57684997_57685230_57688127_57688199_57692917_57693005_57710431_57710532_57713499_57713587_57715347_57715535_57717353_57717463_57718113_57718265_57718852_57718969_57725028_57725082_57726348_57726415_57733629_57733737_57744661_57744729_57754437_57754549_57754793
ENSMUST00000122110.8	chr6	-	3076	20	FSM	ENSMUSG00000038429.11	ENSMUST00000122110.8	3076	20	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_16	54.5472424788812	313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGTACGGGGGCTGAC	7905	False	NA	-27	True	AATACA	-9	NA	124806398	124792000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
ENSMUST00000122188.10	chr8	+	2371	13	FSM	ENSMUSG00000047866.21	ENSMUST00000122188.10	2371	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	73.1522385166715	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAATTCTGGTCTCCAGTG	NA	False	NA	NA	False	AATAAA	-12	NA	87350733	87443259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_87351045_87358013_87358249_87360496_87360560_87364600_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
ENSMUST00000122202.8	chr7	-	1336	7	FSM	ENSMUSG00000061479.16	ENSMUST00000122202.8	1336	7	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_6	627.600567417065	8448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	-8	True	ATTAAA	-26	NA	26895670	26886431	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895418
ENSMUST00000122204.3	chr5	+	774	1	FSM	ENSMUSG00000033036.10	ENSMUST00000122204.3	774	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4626	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAACAACAACAAAAAA	NA	False	NA	NA	False	AATAAA	-36	NA	44070485	44071259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_44070500_44071300
ENSMUST00000122213.8	chr5	-	1049	5	FSM	ENSMUSG00000029235.15	ENSMUST00000122213.8	1049	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	26.9014404818775	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTGTGTATAGGTGTGC	NA	False	NA	NA	False	AATAAA	-43	NA	76478980	76459961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_76460446_76465647_76465857_76466973_76467118_76472152_76472244_76478859
ENSMUST00000122216.8	chr6	+	554	4	FSM	ENSMUSG00000045160.15	ENSMUST00000122216.8	554	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	479.669330546228	3210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGTGCCATGCTTCAGG	50	False	NA	26	True	ATTAAA	-26	NA	83326128	83335378	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83326220_83328247_83328372_83330023_83330113_83335128
ENSMUST00000122279.2	chr18	+	667	4	FSM	ENSMUSG00000024608.12	ENSMUST00000122279.2	667	4	0	0	0	0	multi-exon	FALSE	canonical	3	24831	junction_3	1445.1337500576	112786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGGTTCTGGTGTTGTG	NA	False	NA	67	True	AATAAA	-17	NA	60909310	60911617	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_60909624_60910001_60910164_60910884_60910962_60911502
ENSMUST00000122313.2	chr11	-	162	1	FSM	ENSMUSG00000081958.2	ENSMUST00000122313.2	162	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCACCTTCAGGGACAACCT	NA	False	NA	NA	False	NA	NA	NA	97213315	97213153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_97213200_97213300
ENSMUST00000122334.8	chr3	+	1368	12	FSM	ENSMUSG00000028013.17	ENSMUST00000122334.8	1368	12	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_11	149.418321201731	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATTATATTCATAACTTC	NA	False	NA	NA	False	AATAAA	-14	NA	133015882	133083996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_133016043_133026696_133026762_133028332_133028378_133032408_133032463_133036153_133036274_133045023_133045111_133053824_133053952_133073583_133073712_133076140_133076227_133079383_133079454_133082309_133082350_133083610
ENSMUST00000122384.9	chr9	-	1167	6	FSM	ENSMUSG00000032470.18	ENSMUST00000122384.9	1167	6	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	190.404411713594	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGCTGTTGTCTTCTTAA	3694	False	NA	21	True	GATAAA	-10	NA	99318979	99269980	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99318933
ENSMUST00000122412.2	chr18	-	2667	9	FSM	ENSMUSG00000024539.18	ENSMUST00000122412.2	2667	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	140.12890271104	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATTGTCCCTTACCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	67857665	67804281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
ENSMUST00000122817.8	chr11	-	2662	11	FSM	ENSMUSG00000035086.14	ENSMUST00000122817.8	2662	11	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_7	42.6812605249658	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193086	101179087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101187143_101189834_101189903_101192553_101192683_101192957
ENSMUST00000122819.8	chr8	-	1053	6	FSM	ENSMUSG00000000739.15	ENSMUST00000122819.8	1053	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	38.0189426470542	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACAGACTCTGTCCCAGG	9743	False	NA	-7	True	AATAAA	-16	NA	123885009	123869587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_123869886_123872080_123872262_123875048_123875176_123875957_123876173_123884177_123884327_123884926
ENSMUST00000122883.2	chr11	-	914	7	FSM	ENSMUSG00000039450.12	ENSMUST00000122883.2	914	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	12.5786415094088	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTCCGCCCCTGCAATAAA	6930	False	NA	-60	True	NA	NA	NA	120618055	120616280	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120616682_120616767_120616833_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
ENSMUST00000122893.2	chr5	-	631	4	FSM	ENSMUSG00000034826.15	ENSMUST00000122893.2	631	4	0	0	0	0	multi-exon	FALSE	canonical	3	581	junction_1	53.8908361618395	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCTTGTTTTTTTAGTA	NA	False	NA	NA	False	ATTAAA	-16	NA	92582950	92575879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92576186_92578659_92578813_92578897_92578982_92582862
ENSMUST00000122924.2	chr19	+	1082	3	FSM	ENSMUSG00000110949.2	ENSMUST00000122924.2	1082	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	4	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTCTGGCATCTTCCGT	3564	False	NA	7	True	ATTAAA	-16	NA	4050630	4052101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4051329_4051627_4051706_4051795
ENSMUST00000122925.2	chr1	+	517	2	FSM	ENSMUSG00000026333.15	ENSMUST00000122925.2	517	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCACAATCCTGTGTTTA	NA	False	NA	NA	False	ATTAAA	-29	NA	97697925	97698730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_97697981_97698268
ENSMUST00000122955.8	chr6	-	1605	7	FSM	ENSMUSG00000068329.13	ENSMUST00000122955.8	1605	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	204.724543933767	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTACAGTCAAAAGTGGGG	1897	False	NA	-12	True	AATAAA	-17	NA	83031552	83028260	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83030018_83030052_83030309_83030505_83030593_83030799_83030901
ENSMUST00000123087.8	chr2	+	583	3	FSM	ENSMUSG00000063714.16	ENSMUST00000123087.8	583	3	0	0	0	0	multi-exon	FALSE	canonical	1	97	junction_1	49.5	1153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTCCCTGTAAATAGCACA	NA	False	NA	90	True	AATAAA	-4	NA	72809767	72819021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_72809940_72817871_72817977_72818715
ENSMUST00000123109.8	chr7	-	2237	7	FSM	ENSMUSG00000038930.12	ENSMUST00000123109.8	2237	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	12.8192563486863	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAATAATAAA	NA	False	NA	NA	False	NA	NA	NA	79973873	79966388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_79966799_79967200_79967231_79968606_79968775_79968993_79969090_79969839_79970930_79971024_79971092_79973497
ENSMUST00000123112.8	chr15	-	1896	7	FSM	ENSMUSG00000022552.17	ENSMUST00000123112.8	1896	7	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_5	16.0977914289162	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTTCTGTTCTTGGA	8114	False	NA	-3	True	ATTAAA	-16	NA	76235310	76231239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76231386_76231458_76232018_76232095_76232205_76232285_76232428_76232500_76232636_76234254_76234430_76234680
ENSMUST00000123146.8	chr16	+	361	3	FSM	ENSMUSG00000071632.11	ENSMUST00000123146.8	361	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	39.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGACTGGAAACTTAACT	NA	False	NA	NA	False	AGTAAA	-17	NA	18655330	18656137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18655370_18655455_18655624_18655983
ENSMUST00000123184.2	chr5	-	563	3	FSM	ENSMUSG00000050856.17	ENSMUST00000123184.2	563	3	0	0	0	0	multi-exon	FALSE	canonical	3	3979	junction_1	613.5	7126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTCTCTCTTTACTGT	5553	False	NA	-2	True	AATAAA	-22	NA	108582263	108581111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_108581204_108581596_108581696_108581891
ENSMUST00000123244.8	chr10	+	927	8	FSM	ENSMUSG00000020059.10	ENSMUST00000123244.8	927	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	38.7767024521326	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGGTTTCAGTATATC	NA	False	NA	4	True	AATAAA	-16	NA	88295525	88309098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88303144_88303245_88305407_88305507_88308537_88308643_88308766
ENSMUST00000123265.2	chr2	-	1572	2	FSM	ENSMUSG00000078861.9	ENSMUST00000123265.2	1572	2	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	0	1054	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTCATACAGATAAAAAGA	NA	False	NA	0	True	NA	NA	NA	177720248	177710268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_177711743_177720150
ENSMUST00000123355.8	chr7	+	1298	3	FSM	ENSMUSG00000036854.15	ENSMUST00000123355.8	1298	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	8.5	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTGCCTTATGTCTGGG	NA	False	NA	8	True	AATAAA	-16	NA	30251948	30254864	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30252153_30253686_30253810_30253893
ENSMUST00000123362.8	chrX	-	1675	5	FSM	ENSMUSG00000031393.17	ENSMUST00000123362.8	1675	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	78.7222173214144	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAACTTAGAGTTTCGTGG	NA	False	NA	NA	False	AATAAA	-21	NA	73129218	73078894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_73079937_73080045_73080101_73080587_73080939_73123514_73123639_73129115
ENSMUST00000123386.2	chr5	-	221	2	FSM	ENSMUSG00000038135.5	ENSMUST00000123386.2	221	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGCGGGCCTCGGAG	NA	False	NA	NA	False	AATAAA	-15	NA	24956322	24956000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_24956188_24956288
ENSMUST00000123413.8	chr16	+	1965	12	FSM	ENSMUSG00000022884.17	ENSMUST00000123413.8	1965	12	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_11	605.093586095477	2715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTATATTCACTTTATAT	6072	False	NA	NA	False	AATAAA	-1	NA	22926526	22932680	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
ENSMUST00000123429.2	chr6	+	691	4	FSM	ENSMUSG00000046323.9	ENSMUST00000123429.2	691	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	513.829413975754	1047	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCGACTCTTTGTAATTTA	1023	False	NA	24	True	AATAAA	-14	NA	122603711	122607231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_122603771_122605535_122605769_122606259_122606296_122606868
ENSMUST00000123457.2	chr10	+	522	2	FSM	ENSMUSG00000085347.2	ENSMUST00000123457.2	522	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGCCCTGTGCCCCAAA	NA	False	NA	NA	False	NA	NA	NA	62176034	62185630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_62176192_62185265
ENSMUST00000123462.8	chrX	+	1144	6	FSM	ENSMUSG00000086877.8	ENSMUST00000123462.8	1144	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	58.2594198391985	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTTTATTGTACATCA	NA	False	NA	NA	False	ATTAAA	-17	NA	20827922	20852962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_20827952_20828088_20828218_20828775_20828897_20833967_20834048_20851664_20851705_20852217
ENSMUST00000123498.8	chr12	+	2117	11	FSM	ENSMUSG00000047022.19	ENSMUST00000123498.8	2117	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_10	14.6659469520382	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTTGGTATTTTTTAAT	NA	False	NA	NA	False	AATAAA	-31	NA	57277231	57543985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738_57503970_57543243
ENSMUST00000123519.9	chr1	-	983	6	FSM	ENSMUSG00000026095.16	ENSMUST00000123519.9	983	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	221.433872747599	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGGGTGTAGTAGTT	NA	False	NA	-30	True	AATAAA	-13	NA	53391911	53383803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_53384139_53385738_53385921_53387604_53387718_53389145_53389222_53390038_53390093_53391688
ENSMUST00000123544.2	chr11	-	1291	2	FSM	ENSMUSG00000042549.11	ENSMUST00000123544.2	1291	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	335	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTATGGGTATAAAATTC	NA	False	NA	NA	False	NA	NA	NA	60822693	60811742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_60812732_60822391
ENSMUST00000123614.8	chr12	+	3168	10	FSM	ENSMUSG00000072946.13	ENSMUST00000123614.8	3168	10	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_5	23.1948270094864	1554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATGACCACTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	84332005	84362606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
ENSMUST00000123666.8	chr7	-	2319	13	FSM	ENSMUSG00000030846.16	ENSMUST00000123666.8	2319	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_8	77.5911650182473	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGACTATAAATTTTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	128063441	128044003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128048454_128048832_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
ENSMUST00000123680.2	chr9	+	695	2	FSM	ENSMUSG00000010607.9	ENSMUST00000123680.2	695	2	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_1	0	6015	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTTCTAAGATTTGTT	NA	False	NA	44	True	AATAAA	-44	NA	22068141	22069654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_22068210_22069027
ENSMUST00000123694.2	chr5	-	433	3	FSM	ENSMUSG00000034826.15	ENSMUST00000123694.2	433	3	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_1	59	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTTACAGACTTGTTGCAG	NA	False	NA	NA	False	NA	NA	NA	92565831	92564067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92564198_92565311_92565423_92565639
ENSMUST00000123701.9	chr11	-	1259	7	FSM	ENSMUSG00000018565.18	ENSMUST00000123701.9	1259	7	0	0	0	0	multi-exon	FALSE	canonical	3	523	junction_1	38.6393581727233	681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTCTGGTAATGCTTA	9889	False	NA	-4	True	AATAAA	-26	NA	69871089	69859053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824
ENSMUST00000123750.8	chr18	+	2004	5	FSM	ENSMUSG00000034006.18	ENSMUST00000123750.8	2004	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	16.6132477258361	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGTGTAAGTAAGTCAGT	NA	False	NA	15	True	AATAAA	-15	NA	80298459	80335940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_80298626_80299996_80300334_80306634_80306769_80326490_80326708_80334790
ENSMUST00000123774.2	chr16	-	1308	8	FSM	ENSMUSG00000033809.16	ENSMUST00000123774.2	1308	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	136.842975705734	948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTTGTGCAGCATACATA	NA	False	NA	-9	True	AATAAA	-14	NA	20429497	20424222	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20429292
ENSMUST00000123818.2	chr2	-	1082	6	FSM	ENSMUSG00000072980.4	ENSMUST00000123818.2	1082	6	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_4	35.3870032639103	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTTTGCTTATGTAAAATA	7480	False	NA	NA	False	NA	NA	NA	119448950	119440451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_119440846_119442232_119442337_119443492_119443575_119446012_119446136_119448334_119448402_119448638
ENSMUST00000123825.8	chr1	+	636	3	FSM	ENSMUSG00000026201.13	ENSMUST00000123825.8	636	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	98.5	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGCCCTGGTTTGGCCTT	NA	False	NA	NA	False	CATAAA	-13	NA	75187517	75188878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_75187669_75187883_75188059_75188568
ENSMUST00000123836.2	chrX	-	875	7	FSM	ENSMUSG00000001134.10	ENSMUST00000123836.2	875	7	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_1	60.2699943771544	5712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAGATTCAATTGGTAGC	NA	False	NA	NA	False	CATAAA	-22	NA	20828256	20817900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
ENSMUST00000123915.2	chrX	-	1025	2	FSM	ENSMUSG00000025289.16	ENSMUST00000123915.2	1025	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAATTAAGGCTATTTTT	NA	False	NA	NA	False	CATAAA	-14	NA	154121470	154119787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_154120451_154121108
ENSMUST00000123924.8	chr13	+	2328	8	FSM	ENSMUSG00000021661.17	ENSMUST00000123924.8	2328	8	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	24.7839645327212	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399701	98410426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279
ENSMUST00000123959.2	chr3	-	407	2	FSM	ENSMUSG00000000563.18	ENSMUST00000123959.2	407	2	0	0	0	0	multi-exon	FALSE	canonical	3	4727	junction_1	0	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCAGATTTCCATCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	105866562	105865906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_105866215_105866463
ENSMUST00000123976.2	chr8	+	756	4	FSM	ENSMUSG00000002345.19	ENSMUST00000123976.2	756	4	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	5.79271573232759	1205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTCGAGCCTCAGCCAGC	8821	False	NA	11	True	AATAAA	-11	NA	70592356	70598185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673
ENSMUST00000124018.8	chrX	+	839	3	FSM	ENSMUSG00000055188.13	ENSMUST00000124018.8	839	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATGAAATATCTTTATT	NA	False	NA	NA	False	AATACA	-14	NA	8011667	8014203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_8011971_8012730_8012858_8013794
ENSMUST00000124035.2	chr7	+	641	4	FSM	ENSMUSG00000040952.17	ENSMUST00000124035.2	641	4	0	0	0	0	multi-exon	FALSE	canonical	3	15652	junction_3	5490.91639791473	5606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTTATGCGTCTGTTGAAA	NA	False	NA	NA	False	NA	NA	NA	24584341	24588397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_24584632_24584876_24584978_24587706_24587891_24588331
ENSMUST00000124163.8	chr2	-	697	4	FSM	ENSMUSG00000027166.15	ENSMUST00000124163.8	697	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	95.3496489534993	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACAACTTTTGTTTTCTCT	NA	False	NA	-74	True	NA	NA	NA	105833608	105797128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_105797440_105800792_105800862_105832273_105832421_105833438
ENSMUST00000124187.8	chr2	+	3154	6	FSM	ENSMUSG00000027285.14	ENSMUST00000124187.8	3154	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	54.4147038951789	1316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGCTCCAATATGAATCC	NA	False	NA	NA	False	AATAAA	-16	NA	120439863	120452041	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455
ENSMUST00000124195.8	chr5	+	2549	15	FSM	ENSMUSG00000029267.18	ENSMUST00000124195.8	2549	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	705.472066587114	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTTTCAAGCAAAATGTA	NA	False	NA	-38	True	NA	NA	NA	108213576	108255324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_108213832_108228690_108228894_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUST00000124200.8	chrX	+	1742	9	FSM	ENSMUSG00000009995.18	ENSMUST00000124200.8	1742	9	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_7	66.075241202738	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTCTGTCTTCTGTGTA	NA	False	NA	7	True	AATAAA	-20	NA	73326355	73333754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332120_73332710_73332789_73332904
ENSMUST00000124236.2	chrX	-	690	5	FSM	ENSMUSG00000006678.7	ENSMUST00000124236.2	690	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	184.030398304193	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAATAGCTGCAGTG	4317	False	NA	NA	False	NA	NA	NA	92675721	92666903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_92667180_92667391_92667522_92667991_92668104_92670093_92670219_92675674
ENSMUST00000124246.4	chr6	-	1181	2	FSM	ENSMUSG00000086429.10	ENSMUST00000124246.4	1181	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGAATGACTTTTTAAT	NA	False	NA	0	True	NA	NA	NA	113054171	113047358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_113048397_113054028
ENSMUST00000124307.2	chr17	+	522	2	FSM	ENSMUSG00000024457.17	ENSMUST00000124307.2	522	2	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	0	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	37148025	37148747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_37148157_37148356
ENSMUST00000124314.3	chr7	-	1073	5	FSM	ENSMUSG00000025499.19	ENSMUST00000124314.3	1073	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	269.37183872855	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTCTCTGGCTGGAAGT	328	False	NA	-3	True	AGTAAA	-17	NA	140772853	140770839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140771381_140771867_140771950_140772043_140772204_140772354_140772534_140772742
ENSMUST00000124334.8	chr19	-	2067	16	FSM	ENSMUSG00000024906.11	ENSMUST00000124334.8	2067	16	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_15	11.5573930163049	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGGTCCTTCTGAAAT	NA	False	NA	2	True	AATAAA	-39	NA	5538430	5532859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5533058_5533135_5533220_5533482_5533587_5533662_5533792_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789_5537920_5538015
ENSMUST00000124394.3	chr5	-	449	2	FSM	ENSMUSG00000099061.2	ENSMUST00000124394.3	449	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTTACGGTTCTGTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	106722584	106705604	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_106705923_106722453
ENSMUST00000124518.2	chr2	-	2383	13	FSM	ENSMUSG00000027641.14	ENSMUST00000124518.2	2383	13	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	21.3559450478992	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGGACTTGTATACATGT	NA	False	NA	-6	True	NA	NA	NA	157046446	157016905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
ENSMUST00000124540.8	chr2	+	837	6	FSM	ENSMUSG00000010911.13	ENSMUST00000124540.8	837	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	142.218704817615	1682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTTTAAATGAGTTGGAA	4613	False	NA	12	True	AATAAA	-34	NA	102904039	102922976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_102904187_102913299_102913401_102918905_102919024_102919747_102919884_102922093_102922262_102922809
ENSMUST00000124542.2	chr6	+	701	4	FSM	ENSMUSG00000029802.14	ENSMUST00000124542.2	701	4	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	32.7651576458218	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATATGTTTACCCATCCTT	NA	False	NA	NA	False	NA	NA	NA	58617530	58641768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_58617613_58632622_58632842_58640598_58640659_58641428
ENSMUST00000124546.8	chr5	-	2042	19	FSM	ENSMUSG00000029276.14	ENSMUST00000124546.8	2042	19	0	0	0	0	multi-exon	FALSE	canonical	2	35	junction_18	75.5102805526228	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTCATTATACTTTAT	NA	False	NA	NA	False	AATAAA	-15	NA	107745410	107696889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723231_107726316_107726434_107741618_107741745_107744653_107744729_107745254
ENSMUST00000124565.3	chr9	-	711	2	FSM	ENSMUSG00000086158.3	ENSMUST00000124565.3	711	2	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	0	523	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTGTTTTTTTTTTT	NA	False	NA	1	True	AATAAA	-29	NA	72892658	72887003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_72887479_72892422
ENSMUST00000124610.6	chr5	-	2306	10	FSM	ENSMUSG00000039753.17	ENSMUST00000124610.6	2306	10	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	33.8234340562579	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTTAAAATGACAAGTTGT	8876	False	NA	NA	False	TTTAAA	-2	NA	43939444	43907947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_43908353_43915563_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
ENSMUST00000124621.2	chr15	+	513	3	FSM	ENSMUSG00000022201.17	ENSMUST00000124621.2	513	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	305.5	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTTTCCTAGCTGTAA	75	False	NA	NA	False	ACTAAA	-25	NA	12117951	12122423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_12118034_12118324_12118425_12122092
ENSMUST00000124630.8	chr4	-	615	5	FSM	ENSMUSG00000028795.16	ENSMUST00000124630.8	615	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	36.8874978820738	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTACTCGGTGCTCTCCTT	NA	False	NA	-4	True	ATTAAA	-14	NA	129515214	129513068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_129513240_129514249_129514273_129514475_129514670_129514776_129514944_129515154
ENSMUST00000124664.8	chr9	+	1285	4	FSM	ENSMUSG00000074039.11	ENSMUST00000124664.8	1285	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	6.12825877028341	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAGGACATGGTGAGA	NA	False	NA	NA	False	NA	NA	NA	114197370	114206297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_114197553_114197911_114197968_114198056_114198132_114205325
ENSMUST00000124745.8	chr8	+	1933	5	FSM	ENSMUSG00000074247.11	ENSMUST00000124745.8	1933	5	0	0	0	0	multi-exon	FALSE	canonical	2	515	junction_4	131.476946648452	2229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921842	71928742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71921970_71924680_71924762_71924838_71924891_71926418_71926481_71927131
ENSMUST00000124762.2	chr11	+	1427	2	FSM	ENSMUSG00000053574.6	ENSMUST00000124762.2	1427	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGTCACTTCTTATTC	NA	False	NA	NA	False	AATAAA	-14	NA	72105997	72109270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_72106828_72108673
ENSMUST00000124764.8	chr8	+	1419	7	FSM	ENSMUSG00000031570.18	ENSMUST00000124764.8	1419	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	20.3141986469235	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210087	26214914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_26210179_26210293_26210363_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
ENSMUST00000124790.8	chr8	-	945	3	FSM	ENSMUSG00000079042.11	ENSMUST00000124790.8	945	3	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_2	5	2579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTATGAGTTTATTGTG	NA	False	NA	-24	True	ATTAAA	-18	NA	65489824	65481071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_65481644_65488316_65488407_65489541
ENSMUST00000124818.3	chr11	-	771	3	FSM	ENSMUSG00000085156.9	ENSMUST00000124818.3	771	3	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_1	1	2786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTGATCGGGTTTGA	NA	False	NA	-1	True	NA	NA	NA	6478766	6475590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6475818_6476354_6476438_6478305
ENSMUST00000124838.2	chr10	-	1525	8	FSM	ENSMUSG00000040006.14	ENSMUST00000124838.2	1525	8	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_3	35.482102415679	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGAATTGCTTTATTT	7489	False	NA	-10	True	AATAAA	-8	NA	7656655	7643719	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_7644350_7646120_7646285_7649061_7649196_7649711_7649869_7650981_7651134_7653537_7653635_7655066_7655127_7656524
ENSMUST00000124857.8	chr4	+	1931	14	FSM	ENSMUSG00000028687.18	ENSMUST00000124857.8	1931	14	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	30.7380611354533	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGAACTTTCTGGGCTTTC	NA	False	NA	33	True	AATAAA	-23	NA	116664934	116676635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675480_116676451
ENSMUST00000124904.8	chrX	+	1744	9	FSM	ENSMUSG00000067768.13	ENSMUST00000124904.8	1744	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	126.780075327316	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257954	72266059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_72258088_72258379_72258962_72259091_72259265_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
ENSMUST00000124932.2	chr11	+	404	2	FSM	ENSMUSG00000059278.10	ENSMUST00000124932.2	404	2	0	0	0	0	multi-exon	FALSE	canonical	3	1280	junction_1	0	3466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286943	69287506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69287187_69287345
ENSMUST00000124941.8	chr10	-	721	5	FSM	ENSMUSG00000051736.9	ENSMUST00000124941.8	721	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	11.3880419739304	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGGTGATGACAATGGTT	NA	False	NA	-17	True	AATAAA	-14	NA	39009896	38994814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_38995031_38996253_38996393_38998172_38998329_39008242_39008375_39009818
ENSMUST00000124949.2	chr2	-	1589	5	FSM	ENSMUSG00000039033.12	ENSMUST00000124949.2	1589	5	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	8.8423695919137	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTTCTCAGTGTTTGCC	NA	False	NA	NA	False	NA	NA	NA	139884134	139818451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013
ENSMUST00000124967.2	chr8	-	611	3	FSM	ENSMUSG00000090137.9	ENSMUST00000124967.2	611	3	0	0	0	0	multi-exon	FALSE	canonical	3	22365	junction_1	190	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGTGCTACGCACGCCTG	NA	False	NA	NA	False	NA	NA	NA	70962595	70961079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70961179_70961945_70962033_70962170
ENSMUST00000124971.2	chr7	-	1122	5	FSM	ENSMUSG00000025499.19	ENSMUST00000124971.2	1122	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	242.211039178647	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTGTCTCTGGCTGGA	NA	False	NA	-6	True	AGTAAA	-14	NA	140773795	140770842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140771381_140772043_140772254_140772354_140772534_140772742_140772895_140773752
ENSMUST00000124996.8	chr13	+	474	2	FSM	ENSMUSG00000071451.11	ENSMUST00000124996.8	474	2	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	0	3928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGCTTCATTTTACTTT	NA	False	NA	17	True	AATAAA	-17	NA	34346946	34362151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_34347233_34361963
ENSMUST00000125040.8	chr16	-	2200	5	FSM	ENSMUSG00000071533.12	ENSMUST00000125040.8	2200	5	0	0	0	0	multi-exon	FALSE	canonical	3	494	junction_4	790.763357459107	3166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	55850059	55835868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55849965
ENSMUST00000125127.8	chr18	+	1683	4	FSM	ENSMUSG00000024571.16	ENSMUST00000125127.8	1683	4	0	0	0	0	multi-exon	FALSE	canonical	3	1096	junction_3	900.996608699993	4413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACACGTTTGTTGTGGG	NA	False	NA	NA	False	AATAAA	-12	NA	80250012	80255947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_80250117_80250368_80250559_80253276_80253346_80254627
ENSMUST00000125172.8	chr11	+	1799	7	FSM	ENSMUSG00000038845.12	ENSMUST00000125172.8	1799	7	0	0	0	0	multi-exon	FALSE	canonical	3	4384	junction_3	774.980806213935	28797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGGGTGTGTTTTCAATT	NA	False	NA	11	True	AATAAA	-25	NA	95557782	95571599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
ENSMUST00000125183.2	chr3	-	923	3	FSM	ENSMUSG00000028099.9	ENSMUST00000125183.2	923	3	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	7.5	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTTGGTGTGTGCCAGT	NA	False	NA	-4	True	AATGAA	-19	NA	96634791	96630738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_96631369_96633149_96633316_96634664
ENSMUST00000125211.2	chr8	+	507	2	FSM	ENSMUSG00000006273.15	ENSMUST00000125211.2	507	2	0	0	0	0	multi-exon	FALSE	canonical	3	1413	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAAGTAATGTTCTTC	NA	False	NA	NA	False	NA	NA	NA	69541440	69549238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_69541581_69548871
ENSMUST00000125242.8	chr11	-	910	7	FSM	ENSMUSG00000039450.12	ENSMUST00000125242.8	910	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	12.2202018532156	794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTGTGTGCTGATTCTC	6915	False	NA	-30	True	AATAAA	-11	NA	120618070	120616250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120616434_120616563_120616682_120616767_120616833_120616913_120617138_120617236_120617392_120617824_120617923_120618003
ENSMUST00000125243.3	chr2	-	1425	14	FSM	ENSMUSG00000061136.17	ENSMUST00000125243.3	1425	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	212.889059087803	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGCAAGATCAAAATA	NA	False	NA	9	True	TATAAA	-25	NA	53081184	53043061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53078459_53078553_53079980_53080113_53081034
ENSMUST00000125257.3	chr8	-	2079	10	FSM	ENSMUSG00000031667.17	ENSMUST00000125257.3	2079	10	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_9	63.7020456287233	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGCTGTTAAATAATTTT	NA	False	NA	-73	True	AATAAA	-18	NA	91860655	91850196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91860527
ENSMUST00000125262.2	chr4	+	592	5	FSM	ENSMUSG00000040455.18	ENSMUST00000125262.2	592	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	2.77263412660235	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATACTTTGCCTGATAATC	9082	False	NA	NA	False	ATTAAA	-11	NA	21776260	21784840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692
ENSMUST00000125290.8	chr8	+	2410	7	FSM	ENSMUSG00000046295.14	ENSMUST00000125290.8	2410	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_6	8.31998931623246	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACAACAACAAAGCCA	NA	False	NA	-18	True	NA	NA	NA	71858659	71862512	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71858742_71858830_71858984_71859322_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
ENSMUST00000125374.8	chr6	+	391	3	FSM	ENSMUSG00000085412.8	ENSMUST00000125374.8	391	3	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	38	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAGAA	778	False	NA	NA	False	NA	NA	NA	52079928	52089508	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_52080017_52083750_52083877_52089331
ENSMUST00000125430.2	chr6	+	1680	5	FSM	ENSMUSG00000029910.15	ENSMUST00000125430.2	1680	5	0	0	0	0	multi-exon	FALSE	canonical	3	769	junction_4	89.7646227642048	2497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAAAATTAAGCCTTGT	NA	False	NA	48	True	TATAAA	-25	NA	66512408	66518004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_66513089_66514552_66514674_66515948_66516053_66516754_66516935_66517409
ENSMUST00000125445.8	chr4	-	1851	10	FSM	ENSMUSG00000053730.16	ENSMUST00000125445.8	1851	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_7	9.25896295822207	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTGTGTCCTGTGATT	10001	False	NA	NA	False	AAAAAG	-21	NA	129590589	129570147	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586428_129586512_129586858_129587079_129587678_129587806_129590507
ENSMUST00000125463.3	chr11	+	957	2	FSM	ENSMUSG00000038046.5	ENSMUST00000125463.3	957	2	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGTTGTTTGTTTGTTTG	571	False	NA	NA	False	AAAAAG	-4	NA	76134561	76135710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_76134913_76135104
ENSMUST00000125491.2	chr2	+	557	4	FSM	ENSMUSG00000027306.16	ENSMUST00000125491.2	557	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	610.942441369616	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTGTGCTAATAACATTAT	NA	False	NA	NA	False	AGTAAA	-3	NA	119449209	119460986	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_119449377_119454583_119454668_119458027_119458165_119460817
ENSMUST00000125539.8	chr6	+	699	3	FSM	ENSMUSG00000030291.13	ENSMUST00000125539.8	699	3	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	124.5	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTTTGTTTGTCCTT	NA	False	NA	36	True	AATAAA	-21	NA	146544044	146552100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_146544151_146550647_146550749_146551608
ENSMUST00000125548.8	chr3	+	956	6	FSM	ENSMUSG00000008958.15	ENSMUST00000125548.8	956	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	357.37017223042	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCACTACCTGGCTCTGG	2611	False	NA	NA	False	NA	NA	NA	95018383	95030032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95018407_95025535_95025689_95025959_95026075_95026441_95026619_95028572_95028718_95029689
ENSMUST00000125612.2	chr10	+	1169	8	FSM	ENSMUSG00000020059.10	ENSMUST00000125612.2	1169	8	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	7.98212288268514	1195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGGTTTCAGTATATC	NA	False	NA	4	True	AATAAA	-16	NA	88295525	88309098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88302300_88302419_88303144_88303245_88305407_88305507_88308537
ENSMUST00000125630.8	chr9	+	1611	14	FSM	ENSMUSG00000041506.16	ENSMUST00000125630.8	1611	14	0	0	0	0	multi-exon	FALSE	canonical	3	1203	junction_10	77.2574272104087	4948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGTTCTCCCTTGTTCC	NA	False	NA	15	True	ATTAAA	-15	NA	106354516	106362615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
ENSMUST00000125647.8	chr4	+	1186	9	FSM	ENSMUSG00000028601.19	ENSMUST00000125647.8	1186	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	262.339951208351	3015	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTTGTGCTGGAATTGTT	NA	False	NA	22	True	AATAAA	-15	NA	108022684	108036503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_108022859_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
ENSMUST00000125682.2	chr10	+	1182	6	FSM	ENSMUSG00000006728.13	ENSMUST00000125682.2	1182	6	0	0	0	0	multi-exon	FALSE	canonical	3	4641	junction_2	425.007011706866	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGGTACTGGACCTGGGC	NA	False	NA	NA	False	NA	NA	NA	126899736	126902100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969
ENSMUST00000125702.2	chr11	-	706	3	FSM	ENSMUSG00000042148.9	ENSMUST00000125702.2	706	3	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_2	15.5	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTACACATGATTGTGGA	5005	False	NA	NA	False	NA	NA	NA	63970294	63962223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_63962663_63964362_63964497_63970161
ENSMUST00000125710.8	chr2	-	917	6	FSM	ENSMUSG00000047617.12	ENSMUST00000125710.8	917	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	2.82842712474619	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTCCGTCAAATAAACT	5322	False	NA	-53	True	NA	NA	NA	25351020	25349542	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25349714_25349786_25349872_25350020_25350087_25350178_25350370_25350456_25350507_25350666
ENSMUST00000125726.8	chr4	-	807	5	FSM	ENSMUSG00000059291.16	ENSMUST00000125726.8	807	5	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_1	4361.44284469027	20347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACTTGATCCAAAAAGCT	NA	False	NA	-47	True	NA	NA	NA	135780307	135777300	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877
ENSMUST00000125733.8	chr12	-	2526	6	FSM	ENSMUSG00000050671.13	ENSMUST00000125733.8	2526	6	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	6.95701085237043	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGATAAAGGATTTGGGG	7669	False	NA	1	True	AATAAA	-21	NA	87346479	87325411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_87326977_87329073_87329158_87329419_87329561_87331799_87332161_87333668_87333912_87346347
ENSMUST00000125752.3	chr11	-	779	3	FSM	ENSMUSG00000093989.2	ENSMUST00000125752.3	779	3	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_2	359	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCTGTCTGTGCTTTCA	NA	False	NA	-1	True	AATAAA	-20	NA	70130606	70128949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70129297_70129763_70129841_70130251
ENSMUST00000125760.8	chr1	+	665	4	FSM	ENSMUSG00000026349.15	ENSMUST00000125760.8	665	4	0	0	0	0	multi-exon	FALSE	canonical	3	495	junction_3	16.8193010820572	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCCCATGGCTTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	127701900	127721326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094
ENSMUST00000125774.2	chr1	+	1495	7	FSM	ENSMUSG00000026426.11	ENSMUST00000125774.2	1495	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	183.490235889179	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGTGTGTATGGTGCTGGT	NA	False	NA	15	True	AATAAA	-19	NA	135075406	135084007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_135075466_135080208_135080290_135080530_135080605_135081913_135082008_135082145_135082214_135082450_135082522_135082959
ENSMUST00000125776.8	chr4	-	761	3	FSM	ENSMUSG00000078570.11	ENSMUST00000125776.8	761	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	71	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTGACCTTTCTTTTCT	7724	False	NA	-3	True	ATTAAA	-20	NA	124744454	124743278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_124743756_124744024_124744227_124744372
ENSMUST00000125780.2	chr4	+	1065	5	FSM	ENSMUSG00000009863.15	ENSMUST00000125780.2	1065	5	0	0	0	0	multi-exon	FALSE	canonical	3	2820	junction_2	248.862788500009	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCACCACCACTTCAGACA	NA	False	NA	NA	False	NA	NA	NA	140688713	140701608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974
ENSMUST00000125786.8	chr4	+	2937	8	FSM	ENSMUSG00000059939.14	ENSMUST00000125786.8	2937	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	44.3313129302804	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8258	False	NA	22	True	NA	NA	NA	156194441	156211722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208580_156209873
ENSMUST00000125841.3	chr2	+	525	4	FSM	ENSMUSG00000074578.15	ENSMUST00000125841.3	525	4	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_1	54.7783412186483	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCCAGCCCCACAAGGCT	NA	False	NA	NA	False	AATACA	-21	NA	166905142	166907642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_166905218_166905555_166905648_166907078_166907401_166907606
ENSMUST00000125854.8	chr2	+	582	4	FSM	ENSMUSG00000086454.8	ENSMUST00000125854.8	582	4	0	0	0	0	multi-exon	FALSE	canonical	2	29	junction_3	243.142390837596	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTGGTTCAAGCCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	104389528	104401774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_104389552_104390068_104390321_104398205_104398278_104401539
ENSMUST00000125894.9	chr6	-	1216	11	FSM	ENSMUSG00000030032.15	ENSMUST00000125894.9	1216	11	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_10	9.65453261426984	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTCTGAGCACTCAG	9882	False	NA	0	True	TATAAA	-18	NA	83133379	83129690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83129879_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132119_83132459_83132523_83132630_83132854_83133156_83133228_83133296
ENSMUST00000125913.2	chr2	+	1200	11	FSM	ENSMUSG00000027384.7	ENSMUST00000125913.2	1200	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	77.5835678478375	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTTATGTTTCCCAGAA	NA	False	NA	11	True	AATAAA	-11	NA	140012949	140045552	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_140013326_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
ENSMUST00000125929.2	chr11	+	779	2	FSM	ENSMUSG00000020456.18	ENSMUST00000125929.2	779	2	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_1	0	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTTGTGTTTCTATTTTT	NA	False	NA	NA	False	TATAAA	-12	NA	6241640	6247677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_6241694_6246951
ENSMUST00000125982.2	chr11	-	605	4	FSM	ENSMUSG00000000753.16	ENSMUST00000125982.2	605	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	3.39934634239519	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTGGCGTGAAGTTGCT	5527	False	NA	NA	False	NA	NA	NA	75313378	75306295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_75306557_75307055_75307255_75308734_75308823_75313321
ENSMUST00000126019.2	chrX	+	1364	5	FSM	ENSMUSG00000031311.18	ENSMUST00000126019.2	1364	5	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_1	1520.69496859166	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGCAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	100473340	100486037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_100473369_100474101_100474159_100480814_100480984_100483092_100483287_100485121
ENSMUST00000126021.8	chr2	-	1515	7	FSM	ENSMUSG00000027566.16	ENSMUST00000126021.8	1515	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1822.50292638082	3278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGATGAGAACCTGTC	NA	False	NA	-12	True	AATAAA	-17	NA	179684188	179678166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_179678367_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179683431
ENSMUST00000126062.2	chr9	-	823	3	FSM	ENSMUSG00000011114.19	ENSMUST00000126062.2	823	3	0	0	0	0	multi-exon	FALSE	canonical	3	1703	junction_2	71.5	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGCATATTAAACTGGTT	NA	False	NA	NA	False	NA	NA	NA	37568464	37565151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_37565733_37566317_37566389_37568293
ENSMUST00000126071.9	chr13	+	4322	11	FSM	ENSMUSG00000025873.17	ENSMUST00000126071.9	4322	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	132.701770900015	758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACCAGCTGTGGGTCTT	NA	False	NA	NA	False	ATTAAA	-22	NA	54769596	54811876	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
ENSMUST00000126112.8	chr2	-	3360	10	FSM	ENSMUSG00000058835.15	ENSMUST00000126112.8	3360	10	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	54.5400521080666	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTCTTAAAATGATTTT	NA	False	NA	-9	True	AATAAA	-25	NA	22930207	22830084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
ENSMUST00000126116.3	chr7	-	1429	11	FSM	ENSMUSG00000001794.14	ENSMUST00000126116.3	1429	11	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_10	279.009032111866	4353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGTAACTTGGTTATTT	NA	False	NA	-9	True	NA	NA	NA	29894473	29886367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430
ENSMUST00000126117.2	chrX	-	2220	3	FSM	ENSMUSG00000015290.16	ENSMUST00000126117.2	2220	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	782.5	734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTGAATCCTGTGTAAT	NA	False	NA	-7	True	AATAAA	-19	NA	73412164	73409324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_73411193_73411306_73411516_73412021
ENSMUST00000126211.2	chr7	-	968	6	FSM	ENSMUSG00000061479.16	ENSMUST00000126211.2	968	6	0	0	0	0	multi-exon	FALSE	canonical	3	2141	junction_5	100.882902416614	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGACATCGCCTTCGTG	NA	False	NA	NA	False	NA	NA	NA	26895185	26886751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868
ENSMUST00000126213.8	chr7	+	744	4	FSM	ENSMUSG00000015980.15	ENSMUST00000126213.8	744	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.55902608401044	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAAACTGTTCTCTTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	138813858	138822887	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_138814008_138816785_138816905_138818491_138818616_138822535
ENSMUST00000126231.2	chr4	+	630	2	FSM	ENSMUSG00000085761.2	ENSMUST00000126231.2	630	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCTTTGTAAAGTTCTG	NA	False	NA	NA	False	CATAAA	-12	NA	141745208	141756307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_141745442_141755910
ENSMUST00000126245.2	chr3	-	1875	14	FSM	ENSMUSG00000068922.15	ENSMUST00000126245.2	1875	14	0	0	0	0	multi-exon	FALSE	canonical	3	676	junction_13	37.3331396162909	1798	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACGCATTTGTACATTTA	NA	False	NA	-7	True	AATAAA	-44	NA	88821306	88816921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88817218_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873_88821010_88821099
ENSMUST00000126263.8	chr7	-	1625	13	FSM	ENSMUSG00000030780.16	ENSMUST00000126263.8	1625	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	46.7953582693364	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAAGGGAACCGGTTCCT	1181	False	NA	-35	True	NA	NA	NA	127897267	127871497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127871788_127872643_127872722_127872822_127872967_127873804_127873896_127875257_127875316_127875399_127875585_127875666_127875738_127884284_127884387_127887435_127887542_127887630_127887664_127889761_127889808_127896633_127896749_127896961
ENSMUST00000126283.8	chrX	-	2153	7	FSM	ENSMUSG00000034457.11	ENSMUST00000126283.8	2153	7	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_5	9.18331820930394	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTCACAAGTGTAAAAAGC	NA	False	NA	NA	False	ATTAAA	-17	NA	96420822	96381396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_96382809_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
ENSMUST00000126286.8	chrX	+	1449	4	FSM	ENSMUSG00000087193.8	ENSMUST00000126286.8	1449	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	38.6091526281874	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGGGCCACTGGATTTT	7727	False	NA	29	True	TATAAA	-19	NA	7915486	7939198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7915823_7926454_7926526_7936874_7937304_7938585
ENSMUST00000126380.4	chr4	+	1213	3	FSM	ENSMUSG00000086290.10	ENSMUST00000126380.4	1213	3	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	32	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035945	132038335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132036219_132037148_132037215_132037461
ENSMUST00000126386.8	chr11	-	1030	7	FSM	ENSMUSG00000019303.15	ENSMUST00000126386.8	1030	7	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_2	24.7571538482651	1245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCCAGATATCAAACCTGG	NA	False	NA	4	True	TATAAA	-30	NA	100986226	100982957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983
ENSMUST00000126408.2	chr12	+	462	3	FSM	ENSMUSG00000090258.8	ENSMUST00000126408.2	462	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	247.5	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATAAATAAATAAATCTTT	NA	False	NA	-52	True	NA	NA	NA	76812328	76829893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_76812413_76822367_76822439_76829586
ENSMUST00000126432.9	chr18	+	737	6	FSM	ENSMUSG00000024516.14	ENSMUST00000126432.9	737	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	146.338511677548	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTTTTGTGGCCTCTGA	NA	False	NA	NA	False	AATAAA	-21	NA	65933616	65950736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_65933783_65942515_65942626_65945735_65945813_65947908_65948029_65949891_65949950_65950530
ENSMUST00000126478.2	chr7	-	430	2	FSM	ENSMUSG00000038570.16	ENSMUST00000126478.2	430	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCTTTTGTACCTATCC	NA	False	NA	0	True	AATAAA	-27	NA	82297736	82295375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_82295669_82297599
ENSMUST00000126485.2	chr17	-	2481	3	FSM	ENSMUSG00000071267.12	ENSMUST00000126485.2	2481	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	18	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22181445	22158725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_22160832_22172868_22173035_22181236
ENSMUST00000126505.3	chr17	+	1139	7	FSM	ENSMUSG00000024191.16	ENSMUST00000126505.3	1139	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	45.097733374922	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGTGGTAAATGCTTAAC	2007	False	NA	15	True	AATAAA	-15	NA	27000052	27011495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_27000151_27001551_27001606_27002418_27002512_27005670_27005763_27008668_27008771_27009899_27010019_27010914
ENSMUST00000126519.2	chr4	+	441	3	FSM	ENSMUSG00000028936.16	ENSMUST00000126519.2	441	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	2854	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACCTCGGCGGAGGAGTC	NA	False	NA	NA	False	NA	NA	NA	152411523	152414503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_152411817_152411937_152412043_152414460
ENSMUST00000126523.9	chr18	+	1282	9	FSM	ENSMUSG00000024410.16	ENSMUST00000126523.9	1282	9	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_6	11.1740491765519	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATTTGATTTGATGTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	12301773	12314177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722
ENSMUST00000126529.2	chr17	-	1335	3	FSM	ENSMUSG00000024048.16	ENSMUST00000126529.2	1335	3	0	0	0	0	multi-exon	FALSE	canonical	3	3116	junction_2	53	2373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAGTTGTTTAGCGTTA	2316	False	NA	-19	True	ATTAAA	-14	NA	71309160	71301288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_71301780_71303104_71303891_71309102
ENSMUST00000126581.2	chr5	-	562	2	FSM	ENSMUSG00000004642.14	ENSMUST00000126581.2	562	2	0	0	0	0	multi-exon	FALSE	canonical	3	1161	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	33809645	33808968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_33809424_33809538
ENSMUST00000126591.2	chrX	-	712	4	FSM	ENSMUSG00000086807.9	ENSMUST00000126591.2	712	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	6.59966329107444	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTCCAGTTTGAGCTG	NA	False	NA	NA	False	AATAAA	-12	NA	138258487	138248239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_138248639_138255751_138255851_138257038_138257123_138258357
ENSMUST00000126609.2	chrX	-	779	6	FSM	ENSMUSG00000034457.11	ENSMUST00000126609.2	779	6	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	10.0119928086271	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGGAAT	NA	False	NA	NA	False	GGGGCT	-33	NA	96420778	96385151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
ENSMUST00000126614.2	chr9	-	842	3	FSM	ENSMUSG00000037742.15	ENSMUST00000126614.2	842	3	0	0	0	0	multi-exon	FALSE	canonical	3	12130	junction_2	206	3145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCTGCGACTGCCCCTCC	8136	False	NA	NA	False	NA	NA	NA	78387970	78386946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_78387431_78387522_78387703_78387792
ENSMUST00000126639.2	chr5	-	685	3	FSM	ENSMUSG00000051391.10	ENSMUST00000126639.2	685	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCAGCTGGAGTCCATGT	NA	False	NA	NA	False	ATTAAA	-9	NA	135963470	135959538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_135959804_135961370_135961497_135963176
ENSMUST00000126641.2	chr4	+	3754	6	FSM	ENSMUSG00000028676.18	ENSMUST00000126641.2	3754	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	623.730198082472	1134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGTTTTTCTGTAGACT	4321	False	NA	23	True	AATAAA	-28	NA	135583057	135597219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_135583603_135585615_135585721_135589084_135589189_135590350_135590514_135590833_135590888_135594436
ENSMUST00000126661.2	chr11	+	382	2	FSM	ENSMUSG00000020818.17	ENSMUST00000126661.2	382	2	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	0	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCCAAGATTGCACCTCCT	NA	False	NA	5	True	AATAAA	-18	NA	116744604	116745082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116744730_116744825
ENSMUST00000126705.9	chr8	+	895	5	FSM	ENSMUSG00000014856.13	ENSMUST00000126705.9	895	5	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_2	13.1909059582729	1242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAACGGCCGTGTGGGTGA	1	True	NA	13	True	AATAAA	-15	NA	106053019	106055684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055325_106055403
ENSMUST00000126706.8	chr4	-	463	3	FSM	ENSMUSG00000028484.17	ENSMUST00000126706.8	463	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	872	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATTTTTAGGTATTTTT	6800	False	NA	94	True	AATAAA	-19	NA	83383201	83380107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_83380412_83381831_83381951_83383161
ENSMUST00000126751.2	chr10	+	478	3	FSM	ENSMUSG00000025393.13	ENSMUST00000126751.2	478	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5636	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	22	True	AATAAA	-15	NA	127924420	127926142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127924442_127924825_127925028_127925887
ENSMUST00000126793.2	chr16	-	713	3	FSM	ENSMUSG00000035578.17	ENSMUST00000126793.2	713	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCTAAACATTTCGGTAAA	1177	False	NA	NA	False	NA	NA	NA	32876555	32869876	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_32870484_32873993_32874065_32876520
ENSMUST00000126794.2	chr7	+	312	3	FSM	ENSMUSG00000030432.13	ENSMUST00000126794.2	312	3	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_1	3317	20921	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTGCTCATTGAGCT	3412	False	NA	17	True	AATAAA	-32	NA	4796591	4797561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_4796626_4797048_4797182_4797416
ENSMUST00000126909.8	chr2	+	1554	8	FSM	ENSMUSG00000026975.11	ENSMUST00000126909.8	1554	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	38.473950901346	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTGTATGCATCTGT	NA	False	NA	34	True	ATTAAA	-37	NA	24852433	24862173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_24852638_24853034_24853169_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ENSMUST00000126947.8	chr2	+	2519	5	FSM	ENSMUSG00000014873.16	ENSMUST00000126947.8	2519	5	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_4	33.741665637606	374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGCCAAACCAATATGT	NA	False	NA	26	True	CATAAA	-21	NA	26806392	26810184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_26806516_26806716_26806872_26807439_26809068_26809203_26809371_26809738
ENSMUST00000127027.2	chr17	+	2667	4	FSM	ENSMUSG00000096696.2	ENSMUST00000127027.2	2667	4	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_3	31.9826341768293	762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGATGCAACATAGTTT	NA	False	NA	NA	False	NA	NA	NA	17284374	17309890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505
ENSMUST00000127071.2	chr19	+	869	2	FSM	ENSMUSG00000024925.12	ENSMUST00000127071.2	869	2	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_1	0	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAGTCACAGATCCCTTC	5059	False	NA	-63	True	NA	NA	NA	5651914	5652895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5652109_5652220
ENSMUST00000127084.8	chr2	-	1758	10	FSM	ENSMUSG00000027195.11	ENSMUST00000127084.8	1758	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	235.021879727436	2349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTGAAATGAAAGTGTATT	NA	False	NA	NA	False	AATAAA	-18	NA	93988254	93863046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93947774_93947822_93988054
ENSMUST00000127128.8	chr7	-	1574	11	FSM	ENSMUSG00000030726.17	ENSMUST00000127128.8	1574	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	180.514265364264	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTCAAGAATGACCTGC	NA	False	NA	7	True	TATAAA	-34	NA	99770662	99732599	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742689_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99768880_99768937_99770570
ENSMUST00000127159.2	chr18	-	1702	2	FSM	ENSMUSG00000003778.15	ENSMUST00000127159.2	1702	2	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-14	NA	34757654	34754966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_34756605_34757590
ENSMUST00000127234.8	chr18	+	1755	4	FSM	ENSMUSG00000024571.16	ENSMUST00000127234.8	1755	4	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	451.424658411813	4294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTGTGGGAATTCATTG	NA	False	NA	NA	False	AATAAA	-21	NA	80250109	80255956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_80250277_80250368_80250559_80253276_80253346_80254627
ENSMUST00000127239.8	chr16	+	2805	11	FSM	ENSMUSG00000022721.20	ENSMUST00000127239.8	2805	11	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_9	16.6400120192264	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	65	False	NA	8	True	AATAAA	-22	NA	18066542	18071366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
ENSMUST00000127243.8	chr2	-	1162	6	FSM	ENSMUSG00000005233.17	ENSMUST00000127243.8	1162	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	347.700215703125	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	-10	True	NA	NA	NA	69036501	69024238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69036407
ENSMUST00000127252.8	chr2	+	2314	17	FSM	ENSMUSG00000027642.16	ENSMUST00000127252.8	2314	17	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	580.610235953303	952	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTGATGGAGCCTTGCA	NA	False	NA	17	True	AATAAA	-18	NA	157121345	157167976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_157121444_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
ENSMUST00000127270.2	chr11	-	588	4	FSM	ENSMUSG00000058546.9	ENSMUST00000127270.2	588	4	0	0	0	0	multi-exon	FALSE	canonical	3	10927	junction_1	3582.37128170713	7857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTTGTCATTTGTCGC	6470	False	NA	-11	True	CATAAA	-4	NA	78073903	78071757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_78071824_78071979_78072050_78072242_78072420_78073628
ENSMUST00000127309.8	chr2	-	2123	10	FSM	ENSMUSG00000039660.17	ENSMUST00000127309.8	2123	10	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	42.729409885181	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCACCTATGCTCACGT	NA	False	NA	-10	True	AATAAA	-33	NA	30068454	30063464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067978_30068401
ENSMUST00000127404.8	chrX	-	816	4	FSM	ENSMUSG00000072955.15	ENSMUST00000127404.8	816	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	61.5918465022405	1065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTTGAGCAGATTGCACA	NA	False	NA	NA	False	AATAAA	-17	NA	135877618	135855736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135856232_135857483_135857589_135876146_135876252_135877507
ENSMUST00000127405.2	chr11	+	1042	4	FSM	ENSMUSG00000001056.4	ENSMUST00000127405.2	1042	4	0	0	0	0	multi-exon	FALSE	canonical	3	5273	junction_1	70.8723421998235	49712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTCAGTTCTAACGGGT	NA	False	NA	NA	False	TATAAA	-3	NA	51510561	51514541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_51510805_51510908_51510979_51513311_51513418_51513918
ENSMUST00000127439.2	chr10	+	343	2	FSM	ENSMUSG00000025393.13	ENSMUST00000127439.2	343	2	0	0	0	0	multi-exon	FALSE	canonical	3	10408	junction_1	0	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAGAGGTGGGAAAGAGC	NA	False	NA	NA	False	NA	NA	NA	127919174	127919955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127919323_127919760
ENSMUST00000127454.8	chr16	-	1132	7	FSM	ENSMUSG00000033809.16	ENSMUST00000127454.8	1132	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	157.124154731219	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGTGCAGCATACATAA	NA	False	NA	-8	True	AATAAA	-15	NA	20429481	20424221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427491_20427640_20429292
ENSMUST00000127464.8	chr3	+	1095	8	FSM	ENSMUSG00000000561.15	ENSMUST00000127464.8	1095	8	0	0	0	0	multi-exon	FALSE	canonical	3	910	junction_4	52.8737425671876	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCTGTGAGTCTGAGTA	NA	False	NA	NA	False	AATATA	-16	NA	105866823	105873408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080
ENSMUST00000127477.8	chr3	+	1079	6	FSM	ENSMUSG00000027673.13	ENSMUST00000127477.8	1079	6	0	0	0	0	multi-exon	FALSE	canonical	3	2813	junction_1	66.9226419084005	42565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTTGCTTTACTTTTGG	NA	False	NA	10	True	AATAAA	-24	NA	32791138	32805715	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805177
ENSMUST00000127490.8	chr8	+	1643	5	FSM	ENSMUSG00000036810.17	ENSMUST00000127490.8	1643	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	72.261244799685	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTGGTTAGAGATTTTCT	NA	False	NA	13	True	AATAAA	-15	NA	88845414	88861738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_88845498_88846407_88846480_88856322_88856433_88856974_88857030_88860415
ENSMUST00000127505.8	chr8	+	1927	11	FSM	ENSMUSG00000005481.19	ENSMUST00000127505.8	1927	11	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	947.235852362019	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGCATGGCTCCAGCCCC	NA	False	NA	25	True	AATAAA	-11	NA	84441896	84449903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ENSMUST00000127514.2	chr11	+	306	4	FSM	ENSMUSG00000063316.14	ENSMUST00000127514.2	306	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3912.6578633399	4020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	3555	False	NA	62	True	ATTAAA	-18	NA	101334437	101336355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101334497_101334780_101334826_101336045_101336157_101336264
ENSMUST00000127535.2	chrX	-	457	2	FSM	ENSMUSG00000031299.11	ENSMUST00000127535.2	457	2	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGAATCAAAGTTTCTATA	NA	False	NA	NA	False	AATAAA	-10	NA	158921352	158919892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_158920249_158921251
ENSMUST00000127536.2	chr8	+	582	2	FSM	ENSMUSG00000037214.13	ENSMUST00000127536.2	582	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAGAAAAATAAAAATACTC	NA	False	NA	7	True	NA	NA	NA	26648282	26649440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_26648550_26649125
ENSMUST00000127587.8	chr11	+	1412	4	FSM	ENSMUSG00000019437.18	ENSMUST00000127587.8	1412	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	14.2672897060218	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGTCTTAATTGCTCAGA	NA	False	NA	52	True	NA	NA	NA	78069510	78071646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78069883_78070195_78070279_78070365_78070449_78070772
ENSMUST00000127605.8	chr19	-	1753	15	FSM	ENSMUSG00000024830.18	ENSMUST00000127605.8	1753	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	26.377556941538	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGGCTTTTGCCGGACTC	2807	False	NA	1	True	AGTAAA	-17	NA	4213295	4206790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208717_4208801_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
ENSMUST00000127628.6	chr5	-	1481	7	FSM	ENSMUSG00000033434.16	ENSMUST00000127628.6	1481	7	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_1	14.1234635349203	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCGGCCTGGTTTTGTAT	NA	False	NA	-8	True	ATTAAA	-24	NA	110255068	110251844	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518
ENSMUST00000127630.8	chr2	+	2240	8	FSM	ENSMUSG00000027160.17	ENSMUST00000127630.8	2240	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	236.291846526057	1021	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCATTTTTTTTAGAAGT	NA	False	NA	NA	False	AATAAA	-22	NA	109848324	109875667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_109848560_109852226_109852360_109862676_109862785_109867749_109867880_109868424_109868622_109870918_109871078_109871605_109871748_109874531
ENSMUST00000127647.3	chr17	+	1002	5	FSM	ENSMUSG00000024181.10	ENSMUST00000127647.3	1002	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	671.536670629386	2820	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342517	26345587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344473_26344539_26345244
ENSMUST00000127652.2	chr4	+	1332	8	FSM	ENSMUSG00000028618.12	ENSMUST00000127652.2	1332	8	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	584.439518701814	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTGAGTGTTGGGCTTT	72	False	NA	13	True	ATTAAA	-25	NA	107036214	107058191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_107036293_107042974_107043081_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
ENSMUST00000127662.2	chr1	+	642	4	FSM	ENSMUSG00000003464.14	ENSMUST00000127662.2	642	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	205.496147571352	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACATTTTCTGACAAATT	NA	False	NA	NA	False	NA	NA	NA	171954339	171957762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957472
ENSMUST00000127687.8	chr2	+	1127	3	FSM	ENSMUSG00000089951.9	ENSMUST00000127687.8	1127	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	45	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGAGTTCTTCCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	176115453	176124879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_176115528_176123621_176123749_176123953
ENSMUST00000127721.8	chr15	-	546	5	FSM	ENSMUSG00000089715.13	ENSMUST00000127721.8	546	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	65.9445790038878	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATCTCCAATTTGTCCAA	NA	False	NA	NA	False	NA	NA	NA	79718526	79716772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_79716959_79717712_79717780_79717902_79717969_79718115_79718160_79718343
ENSMUST00000127737.2	chr4	-	1054	5	FSM	ENSMUSG00000028639.15	ENSMUST00000127737.2	1054	5	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_2	4449.11772152637	16715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATAATGTCTAGTTTT	NA	False	NA	NA	False	AATAAA	-7	NA	119139989	119135186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_119135565_119136130_119136409_119138766_119138850_119139342_119139646_119139977
ENSMUST00000127791.2	chr12	+	228	2	FSM	ENSMUSG00000051890.14	ENSMUST00000127791.2	228	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGGTCCGAGTGGGTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	69288687	69289416	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_69288788_69289288
ENSMUST00000127793.2	chr8	-	646	3	FSM	ENSMUSG00000090137.9	ENSMUST00000127793.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	3	14257	junction_2	4054	7951	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGTCTAGAGTGACTG	NA	False	NA	-5	True	AATAAA	-27	NA	70963029	70960913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70961179_70961945_70962285_70962987
ENSMUST00000127870.8	chr14	-	2551	21	FSM	ENSMUSG00000040701.17	ENSMUST00000127870.8	2551	21	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_16	29.2801553957625	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTAGCTGTGAAGTGGC	NA	False	NA	-22	True	AATAAA	-16	NA	55344005	55336306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338633_55338851_55338980_55339054_55339145_55339767_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342287_55342385_55342484_55342627_55342762_55342888_55343381_55343587_55343964
ENSMUST00000127878.2	chr19	+	1026	3	FSM	ENSMUSG00000036372.15	ENSMUST00000127878.2	1026	3	0	0	0	0	multi-exon	FALSE	canonical	3	2797	junction_1	181	1076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGCCTCATGTCCATTC	4181	False	NA	27	True	AATAAA	-16	NA	10181581	10185182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_10181629_10183787_10184665_10185080
ENSMUST00000127896.8	chr9	+	575	5	FSM	ENSMUSG00000036781.14	ENSMUST00000127896.8	575	5	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_3	5596.89320069626	73430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTCCTCCCTCTGCTTCT	NA	False	NA	32	True	AATAAA	-16	NA	66853372	66856796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_66853463_66854112_66854222_66854868_66854980_66855920_66856000_66856610
ENSMUST00000127939.2	chr2	+	1985	5	FSM	ENSMUSG00000006418.18	ENSMUST00000127939.2	1985	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	262.348051260153	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAGTAAGCTGCAATGTT	NA	False	NA	15	True	AATAAA	-16	NA	167345365	167358084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_167345522_167352795_167352903_167353131_167353247_167354436_167354545_167356585
ENSMUST00000127962.2	chr4	-	468	3	FSM	ENSMUSG00000058579.6	ENSMUST00000127962.2	468	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	12.5	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	535	False	NA	-2	True	AATAAA	-18	NA	141546513	141542272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_141542367_141545175_141545329_141546292
ENSMUST00000127973.8	chr16	+	1407	6	FSM	ENSMUSG00000022684.16	ENSMUST00000127973.8	1407	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	40.5857117715089	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAGTGAATAAAAATA	NA	False	NA	NA	False	NA	NA	NA	13489813	13517153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_13489943_13502925_13503263_13505254_13505460_13510296_13510442_13515196_13515371_13516736
ENSMUST00000127988.8	chr2	-	2447	8	FSM	ENSMUSG00000038671.16	ENSMUST00000127988.8	2447	8	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_2	23.8627025172878	2849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAGTTAGCCAGTCACA	6076	False	NA	30	True	AATAAA	-14	NA	181007197	180999625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
ENSMUST00000127996.8	chr9	-	2289	11	FSM	ENSMUSG00000039048.16	ENSMUST00000127996.8	2289	11	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_9	18.9747200242849	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	35122351	35115503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121240_35121462_35122102
ENSMUST00000128000.9	chr4	+	422	5	FSM	ENSMUSG00000086290.10	ENSMUST00000128000.9	422	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	86.7478385897885	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132036206	132038335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132036253_132037148_132037215_132037461_132037527_132037761_132037816_132038144
ENSMUST00000128003.8	chr8	+	837	7	FSM	ENSMUSG00000055681.15	ENSMUST00000128003.8	837	7	0	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_1	49.614066105849	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	86	False	NA	26	True	AATAAA	-15	NA	70758347	70765640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70758386_70759148_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355
ENSMUST00000128041.8	chr19	+	2223	9	FSM	ENSMUSG00000025227.15	ENSMUST00000128041.8	2223	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	81.7953811348783	433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTTGGGTCTGTGCCG	824	False	NA	13	True	AGTAAA	-13	NA	46329559	46363691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_46329610_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884
ENSMUST00000128090.8	chr7	+	1987	13	FSM	ENSMUSG00000003762.14	ENSMUST00000128090.8	1987	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	30.8391886332237	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCAGTTCTTTTCTCTCTG	NA	False	NA	17	True	AATAAA	-17	NA	26932785	26957370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949960_26950069_26951685_26951752_26956036_26956124_26956647
ENSMUST00000128100.2	chr4	-	1945	4	FSM	ENSMUSG00000028394.10	ENSMUST00000128100.2	1945	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	150.086641644085	4116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCATACAATGTGCTTT	NA	False	NA	1	True	AATAAA	-22	NA	62443305	62440885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_62442348_62442554_62442674_62442846_62443073_62443167
ENSMUST00000128158.8	chr12	+	656	4	FSM	ENSMUSG00000072946.13	ENSMUST00000128158.8	656	4	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_3	9.0921211313239	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGTCTTTTTTTACTT	NA	False	NA	NA	False	TATAAA	-45	NA	84332154	84345140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784
ENSMUST00000128188.8	chr4	-	1826	4	FSM	ENSMUSG00000042558.17	ENSMUST00000128188.8	1826	4	0	0	0	0	multi-exon	FALSE	canonical	3	330	junction_1	27.3901847788988	572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCATGTCCTGTTCCT	7312	False	NA	NA	False	AATAAA	-15	NA	126215260	126209844	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_126210659_126211095_126211985_126212191_126212289_126215234
ENSMUST00000128210.2	chr2	+	2417	17	FSM	ENSMUSG00000027429.17	ENSMUST00000128210.2	2417	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	148.278967975064	777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGATTTTGTCTCATTTT	NA	False	NA	NA	False	AATAAA	-37	NA	144406818	144432669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_144406924_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
ENSMUST00000128243.2	chr2	-	1008	2	FSM	ENSMUSG00000027620.17	ENSMUST00000128243.2	1008	2	0	0	0	0	multi-exon	FALSE	canonical	3	2349	junction_1	0	3566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAGGAAAAAAAACC	NA	False	NA	-32	True	AATAGA	-8	NA	156022132	156020478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_156021161_156021806
ENSMUST00000128287.2	chr4	+	647	3	FSM	ENSMUSG00000028811.13	ENSMUST00000128287.2	647	3	0	0	0	0	multi-exon	FALSE	canonical	3	1802	junction_1	30	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACAAAAATATACTGGCTC	855	False	NA	NA	False	ATTAAA	-32	NA	129083694	129091234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129083866_129090622_129090770_129090905
ENSMUST00000128475.9	chr15	+	1115	7	FSM	ENSMUSG00000022201.17	ENSMUST00000128475.9	1115	7	0	0	0	0	multi-exon	TRUE	canonical	3	539	junction_4	46.1483116339771	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAGAAACATAAAAAAAAGG	60	False	NA	NA	False	TATAAA	-15	NA	12117936	12149636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_12118034_12118324_12118425_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613
ENSMUST00000128519.8	chr11	-	1845	10	FSM	ENSMUSG00000059796.17	ENSMUST00000128519.8	1845	10	0	0	0	0	multi-exon	TRUE	canonical	3	9657	junction_9	1461.90417007037	28909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	False	NA	64	True	AATAAA	-19	NA	69563143	69557761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
ENSMUST00000128571.2	chrX	-	540	2	FSM	ENSMUSG00000063018.7	ENSMUST00000128571.2	540	2	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	0	2105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTTTGTGGCTTATTAT	NA	False	NA	-28	True	NA	NA	NA	7289227	7278341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_7278772_7289117
ENSMUST00000128681.2	chr2	+	575	2	FSM	ENSMUSG00000078955.4	ENSMUST00000128681.2	575	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTCTGGCTGTTGTCTAC	NA	False	NA	NA	False	NA	NA	NA	160425276	160427111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_160425531_160426790
ENSMUST00000128715.8	chr8	-	3463	12	FSM	ENSMUSG00000031557.17	ENSMUST00000128715.8	3463	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	42.7701912106826	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAACTTTTGTGTGTTT	9833	False	NA	20	True	NA	NA	NA	25592001	25530855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25591675
ENSMUST00000128733.2	chr4	-	397	4	FSM	ENSMUSG00000059291.16	ENSMUST00000128733.2	397	4	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_2	4326.60739558786	1932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGAACACATTGACCTGG	NA	False	NA	NA	False	NA	NA	NA	135780739	135778551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135778614_135778924_135779028_135779877_135780029_135780658
ENSMUST00000128739.2	chr12	+	689	5	FSM	ENSMUSG00000021177.17	ENSMUST00000128739.2	689	5	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_4	38.0616276583122	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTACAGGCCTGGAATGA	NA	False	NA	19	True	ATTAAA	-19	NA	99880264	99921478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
ENSMUST00000128784.2	chr11	+	585	2	FSM	ENSMUSG00000090266.11	ENSMUST00000128784.2	585	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATCAAAGTCTATGCAAT	8951	False	NA	24	True	AATAAA	-29	NA	116734386	116736959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116734601_116736588
ENSMUST00000128788.8	chr11	+	1141	6	FSM	ENSMUSG00000001105.16	ENSMUST00000128788.8	1141	6	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	100.921751867474	3457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCTGTGTGCATTATTT	NA	False	NA	24	True	AATAAA	-33	NA	78427186	78432563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720_78431825_78432186
ENSMUST00000128830.5	chr5	+	575	4	FSM	ENSMUSG00000060152.15	ENSMUST00000128830.5	575	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	380.536755415587	720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGGAATAAACATTCCTAAA	NA	False	NA	-11	True	NA	NA	NA	115376093	115379003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_115376129_115378220_115378371_115378531_115378616_115378697
ENSMUST00000128833.2	chr8	-	471	4	FSM	ENSMUSG00000035439.14	ENSMUST00000128833.2	471	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	232.32496398125	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTTAACAAAATGTGTG	714	False	NA	NA	False	NA	NA	NA	71725002	71712870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71713155_71715695_71715749_71721869_71721929_71724927
ENSMUST00000128876.8	chr2	-	2754	12	FSM	ENSMUSG00000013465.20	ENSMUST00000128876.8	2754	12	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_7	56.9757089026427	605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGGTGAGGAATCTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	25101393	25089727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720
ENSMUST00000128924.2	chr1	+	762	5	FSM	ENSMUSG00000026339.19	ENSMUST00000128924.2	762	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	38.3861954353385	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTTTTGAGGATGTGAG	NA	False	NA	NA	False	AATAAA	-16	NA	121358836	121371751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_121358987_121362261_121362376_121365524_121365620_121369510_121369623_121371460
ENSMUST00000128939.2	chr4	+	262	2	FSM	ENSMUSG00000078503.10	ENSMUST00000128939.2	262	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	1235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATACAAAAAAAGAAAAAAGA	912	False	NA	NA	False	NA	NA	NA	145237346	145238406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_145237496_145238293
ENSMUST00000128955.2	chr9	-	325	2	FSM	ENSMUSG00000051234.7	ENSMUST00000128955.2	325	2	0	0	0	0	multi-exon	FALSE	canonical	3	1105	junction_1	0	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCGCTGTGGTAACCCAGG	3800	False	NA	NA	False	ATTAAA	-15	NA	96360641	96355914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_96356059_96360460
ENSMUST00000128972.9	chr8	-	1141	7	FSM	ENSMUSG00000052926.17	ENSMUST00000128972.9	1141	7	0	0	0	0	multi-exon	FALSE	canonical	3	1021	junction_4	88.9793983646402	1777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	8230	False	NA	-8	True	AATAAA	-14	NA	85692693	85684295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
ENSMUST00000128975.8	chr16	-	600	3	FSM	ENSMUSG00000058240.15	ENSMUST00000128975.8	600	3	0	0	0	0	multi-exon	FALSE	canonical	3	1575	junction_1	12	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTAGG	9205	False	NA	NA	False	NA	NA	NA	91525486	91511227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91511715_91514291_91514364_91525445
ENSMUST00000129021.9	chr4	-	1378	8	FSM	ENSMUSG00000028411.16	ENSMUST00000129021.9	1378	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_6	41.4453168128111	1213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTGGATTGTGTAGTAT	21	False	NA	-8	True	AATATA	-17	NA	40703187	40686241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695419_40697216_40697354_40703136
ENSMUST00000129043.8	chr18	+	1864	5	FSM	ENSMUSG00000034006.18	ENSMUST00000129043.8	1864	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	11.0989864402116	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTTCATGTGGTGTAAG	NA	False	NA	6	True	AATAAA	-39	NA	80299498	80335931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_80299534_80299996_80300334_80306634_80306769_80326490_80326708_80334790
ENSMUST00000129044.8	chr11	-	466	3	FSM	ENSMUSG00000025580.16	ENSMUST00000129044.8	466	3	0	0	0	0	multi-exon	FALSE	canonical	2	960	junction_1	268	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGAGTGCAGATCTTTG	6687	False	NA	-11	True	ATTAAA	-19	NA	119179836	119179189	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_119179386_119179485_119179614_119179694
ENSMUST00000129054.8	chr11	-	1398	4	FSM	ENSMUSG00000041231.16	ENSMUST00000129054.8	1398	4	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_3	11.8602979164381	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGGTTATCTGTTTTATA	NA	False	NA	NA	False	AATAAA	-16	NA	44351657	44345399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_44346443_44347190_44347319_44349031_44349149_44351547
ENSMUST00000129065.8	chr5	-	729	5	FSM	ENSMUSG00000085271.8	ENSMUST00000129065.8	729	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.54950975679639	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGCCTTCTTACCATTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	111909591	111882168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_111882496_111886992_111887080_111887701_111887776_111895707_111895859_111909501
ENSMUST00000129162.3	chr11	+	1828	2	FSM	ENSMUSG00000048497.12	ENSMUST00000129162.3	1828	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	NA	False	NA	2	True	NA	NA	NA	62540274	62557180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_62540418_62555495
ENSMUST00000129181.8	chr4	+	1232	6	FSM	ENSMUSG00000009863.15	ENSMUST00000129181.8	1232	6	0	0	0	0	multi-exon	FALSE	canonical	3	2820	junction_2	227.940694041235	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGAGTTTGCTGCTCT	NA	False	NA	NA	False	NA	NA	NA	140688711	140704107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425
ENSMUST00000129199.8	chr16	+	464	3	FSM	ENSMUSG00000022750.19	ENSMUST00000129199.8	464	3	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_1	154	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATGTGCAGGAGACCCT	NA	False	NA	NA	False	NA	NA	NA	17577481	17589691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_17577559_17582247_17582511_17589567
ENSMUST00000129200.2	chr17	-	1619	4	FSM	ENSMUSG00000023973.14	ENSMUST00000129200.2	1619	4	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_3	233.055072175369	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTGCTACTGCTATGAA	NA	False	NA	-18	True	NA	NA	NA	47063123	47046681	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_47047835_47048100_47048219_47048652_47048776_47062898
ENSMUST00000129218.7	chr1	+	1364	2	FSM	ENSMUSG00000026404.13	ENSMUST00000129218.7	1364	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCACGGTATATTCTTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	136343008	136345530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_136343162_136344319
ENSMUST00000129239.2	chrX	+	747	4	FSM	ENSMUSG00000002014.13	ENSMUST00000129239.2	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	1491	junction_3	71.4438396380137	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGCTCCTGTGTCTATGG	7248	False	NA	52	True	AATAAA	-34	NA	72832449	72834436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_72832560_72833405_72833481_72833636_72833727_72833964
ENSMUST00000129245.8	chr12	+	1498	3	FSM	ENSMUSG00000021268.18	ENSMUST00000129245.8	1498	3	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	159.5	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109506883	109511202	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_109506983_109509582_109509689_109509909
ENSMUST00000129246.2	chr5	-	741	4	FSM	ENSMUSG00000038319.15	ENSMUST00000129246.2	741	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	4.64279609239471	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGACGCCTCTCCCTGCCC	NA	False	NA	NA	False	NA	NA	NA	24527252	24525080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_24525148_24526242_24526421_24526633_24526821_24526943
ENSMUST00000129256.2	chr11	-	650	2	FSM	ENSMUSG00000017288.16	ENSMUST00000129256.2	650	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTTTATGTGTGTATG	NA	False	NA	-9	True	AATAAA	-16	NA	76070464	76067784	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_76068209_76070238
ENSMUST00000129264.2	chr11	-	837	3	FSM	ENSMUSG00000020801.9	ENSMUST00000129264.2	837	3	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	10.5	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	72105879	72104033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_72104700_72104963_72105042_72105786
ENSMUST00000129280.8	chr16	+	679	6	FSM	ENSMUSG00000022503.11	ENSMUST00000129280.8	679	6	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_1	72.6151499344317	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTTTTCAGTGTAGACA	NA	False	NA	NA	False	GATAAA	-17	NA	10229817	10238415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119
ENSMUST00000129295.2	chr11	-	802	2	FSM	ENSMUSG00000059796.17	ENSMUST00000129295.2	802	2	0	0	0	0	multi-exon	FALSE	canonical	3	13166	junction_1	0	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTAGAGGCTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	69562276	69561294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69561574_69561753
ENSMUST00000129311.2	chr8	+	1969	3	FSM	ENSMUSG00000000740.13	ENSMUST00000129311.2	1969	3	0	0	0	0	multi-exon	FALSE	canonical	3	21322	junction_2	2171	1078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829391	123831983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_123829502_123829583_123830096_123830636
ENSMUST00000129352.3	chr13	-	876	6	FSM	ENSMUSG00000021377.16	ENSMUST00000129352.3	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	1443	junction_3	105.718494124727	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGTGTTTTAAGCTGTT	NA	False	NA	26	True	AAGAAA	-12	NA	47259306	47251630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047
ENSMUST00000129364.2	chr2	+	1127	2	FSM	ENSMUSG00000085436.2	ENSMUST00000129364.2	1127	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTTTTTTGGATACGGT	7240	False	NA	NA	False	NA	NA	NA	164753273	164761873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_164753671_164761143
ENSMUST00000129451.2	chr17	-	834	3	FSM	ENSMUSG00000040048.15	ENSMUST00000129451.2	834	3	0	0	0	0	multi-exon	FALSE	canonical	3	2248	junction_2	20.5	15562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTCTGGTGACTAAA	NA	False	NA	NA	False	AATAAA	-22	NA	24943394	24941033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24941495_24941628_24941768_24943160
ENSMUST00000129479.2	chrX	-	747	3	FSM	ENSMUSG00000085757.8	ENSMUST00000129479.2	747	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	17.5	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61570617	61554144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_61554605_61558040_61558144_61570433
ENSMUST00000129489.8	chr2	-	2316	15	FSM	ENSMUSG00000026767.13	ENSMUST00000129489.8	2316	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	43.9893887946924	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	12424255	12352073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408978_12410670_12410732_12414811_12414892_12423969
ENSMUST00000129510.2	chr4	-	1862	8	FSM	ENSMUSG00000009640.12	ENSMUST00000129510.2	1862	8	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_4	16.5393778724643	1011	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTGATTGTTTCCTCA	NA	False	NA	-40	True	AATAGA	-15	NA	117539180	117531882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029
ENSMUST00000129515.8	chr4	+	1366	7	FSM	ENSMUSG00000028797.21	ENSMUST00000129515.8	1366	7	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_3	321.763068456003	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAAGAAAAGCATTAA	3164	False	NA	NA	False	NA	NA	NA	129494460	129501910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129494525_129494775_129495037_129495199_129495327_129495662_129495755_129495987_129496055_129500879_129500973_129501248
ENSMUST00000129529.9	chr2	-	1157	7	FSM	ENSMUSG00000027566.16	ENSMUST00000129529.9	1157	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1848.62763662369	12355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGATGAGAACCTGTC	NA	False	NA	-12	True	AATAAA	-17	NA	179684203	179678166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_179678633_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179684070
ENSMUST00000129557.2	chr11	-	1372	10	FSM	ENSMUSG00000018160.16	ENSMUST00000129557.2	1372	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	68.4675285747617	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAGGACTTTGCATATTT	NA	False	NA	NA	False	AATAAA	-15	NA	98084102	98060736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_98061267_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
ENSMUST00000129595.8	chr8	+	1920	12	FSM	ENSMUSG00000003808.19	ENSMUST00000129595.8	1920	12	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_4	51.0548238790647	1300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTTGTCATTCATTTC	NA	False	NA	37	True	AATAAA	-37	NA	85583623	85595885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594548_85594637_85594716_85594852_85594968_85595494
ENSMUST00000129656.2	chr6	+	710	2	FSM	ENSMUSG00000030037.10	ENSMUST00000129656.2	710	2	0	0	0	0	multi-exon	FALSE	canonical	3	782	junction_1	0	1949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	7463	False	NA	NA	False	ATTAAA	-19	NA	83086100	83086920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83086185_83086294
ENSMUST00000129691.8	chr5	-	833	5	FSM	ENSMUSG00000005378.18	ENSMUST00000129691.8	833	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	441.424611343772	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTCCCTGGCCCTGCA	NA	False	NA	-1	True	ATTAAA	-16	NA	135085781	135081810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_135082279_135082402_135082577_135084881_135084941_135085192_135085239_135085695
ENSMUST00000129713.2	chr2	-	1309	2	FSM	ENSMUSG00000087648.2	ENSMUST00000129713.2	1309	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACATTAGCTACTTTATT	7129	False	NA	-4	True	NA	NA	NA	167996433	167994522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_167995672_167996273
ENSMUST00000129718.2	chr4	+	717	3	FSM	ENSMUSG00000028676.18	ENSMUST00000129718.2	717	3	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_2	671.5	1249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTTTTTATTTTATTTT	4706	False	NA	NA	False	NA	NA	NA	135583442	135586542	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_135583603_135585615_135585783_135586152
ENSMUST00000129756.8	chr17	-	1403	5	FSM	ENSMUSG00000034647.16	ENSMUST00000129756.8	1403	5	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_2	27.5170401751351	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATCTGTGTGTCTGTAT	NA	False	NA	NA	False	AATAAA	-16	NA	66384084	66343792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_66344635_66349527_66349597_66356780_66356929_66359948_66360087_66383878
ENSMUST00000129777.2	chr11	-	632	3	FSM	ENSMUSG00000020914.18	ENSMUST00000129777.2	632	3	0	0	0	0	multi-exon	FALSE	canonical	3	1518	junction_2	50	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGTCCAATAAAGTCCAG	NA	False	NA	NA	False	AAAAAG	-6	NA	98915004	98912910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_98913257_98913665_98913819_98914871
ENSMUST00000129805.2	chr3	-	675	3	FSM	ENSMUSG00000028179.13	ENSMUST00000129805.2	675	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	531.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGTGGTTTTTTTTTGA	NA	False	NA	-18	True	ATTAAA	-19	NA	157603349	157600059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_157600465_157602828_157602968_157603218
ENSMUST00000129823.2	chr6	-	510	2	FSM	ENSMUSG00000072772.4	ENSMUST00000129823.2	510	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTCAGTCATTTGT	9622	False	NA	NA	False	AATAAA	-17	NA	124717658	124716145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124716479_124717481
ENSMUST00000129826.2	chr8	+	659	2	FSM	ENSMUSG00000060038.15	ENSMUST00000129826.2	659	2	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	0	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTAGTCTTTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	85798434	85799491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85798683_85799080
ENSMUST00000129847.8	chr7	+	593	7	FSM	ENSMUSG00000040952.17	ENSMUST00000129847.8	593	7	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_3	8759.20174096298	231153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584057	24589231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24585531_24585613_24587706_24587891_24588331_24588387_24589165
ENSMUST00000129915.8	chrX	-	869	9	FSM	ENSMUSG00000037475.16	ENSMUST00000129915.8	869	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	70.3774422311581	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTCAAGTGCTTTGTTA	NA	False	NA	NA	False	NA	NA	NA	41000763	40949001	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_40949095_40952905_40953073_40961166_40961301_40961441_40961557_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
ENSMUST00000129917.8	chr17	-	1790	5	FSM	ENSMUSG00000061046.10	ENSMUST00000129917.8	1790	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	4.7169905660283	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTGCAGGTCTGTTTAT	4591	False	NA	-2	True	NA	NA	NA	26004309	26001763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26002557_26002758_26002861_26003048_26003547_26003634_26003700_26003977
ENSMUST00000129935.8	chr17	-	949	6	Antisense	novelGene_ENSMUSG00000037805.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27863	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGAGCGCTTTGCGCATG	8882	False	NA	NA	False	NA	NA	NA	28550006	28547557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr17_-_28547593_28547784_28547860_28547940_28548255_28548347_28548497_28549498_28549672_28549803
ENSMUST00000129984.2	chr17	+	965	2	FSM	ENSMUSG00000044533.16	ENSMUST00000129984.2	965	2	0	0	0	0	multi-exon	FALSE	canonical	3	8303	junction_1	0	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTCACAATTAACTGTGG	6389	False	NA	NA	False	NA	NA	NA	24939235	24940281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24939427_24939507
ENSMUST00000130090.8	chr4	+	823	5	FSM	ENSMUSG00000028884.15	ENSMUST00000130090.8	823	5	0	0	0	0	multi-exon	FALSE	canonical	3	1348	junction_4	96.0676844729798	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAAAATAATAAA	NA	False	NA	NA	False	NA	NA	NA	132495686	132501546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137
ENSMUST00000130098.8	chr8	+	1881	4	FSM	ENSMUSG00000074247.11	ENSMUST00000130098.8	1881	4	0	0	0	0	multi-exon	FALSE	canonical	2	31	junction_2	319.275568888208	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921842	71928742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71921970_71924680_71924762_71926418_71926481_71927131
ENSMUST00000130128.2	chr4	-	512	2	FSM	ENSMUSG00000028234.7	ENSMUST00000130128.2	512	2	0	0	0	0	multi-exon	FALSE	canonical	3	8316	junction_1	0	12776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGGCTTTTGTTCAG	365	False	NA	-37	True	AATAAA	-18	NA	3835233	3834469	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_3834684_3834935
ENSMUST00000130136.2	chr12	+	938	2	FSM	ENSMUSG00000021007.15	ENSMUST00000130136.2	938	2	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGGTAAAGAGTG	NA	False	NA	NA	False	NA	NA	NA	98594448	98599014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_98594594_98598221
ENSMUST00000130174.2	chr11	-	583	5	FSM	ENSMUSG00000020419.12	ENSMUST00000130174.2	583	5	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_4	8.69985632065266	875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAATTAAAGACTCATCT	NA	False	NA	NA	False	NA	NA	NA	4391105	4374247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
ENSMUST00000130198.3	chr10	+	1463	3	FSM	ENSMUSG00000020224.16	ENSMUST00000130198.3	1463	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	477.5	17971	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGGAGTTTGACATTT	NA	False	NA	8	True	AATAAA	-17	NA	120063090	120067976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_120063455_120063878_120064109_120067107
ENSMUST00000130205.2	chr11	+	274	2	FSM	ENSMUSG00000085551.2	ENSMUST00000130205.2	274	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTCAGCTCTGACGAAAG	2003	False	NA	NA	False	AATAAA	-16	NA	59812324	59812715	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_59812434_59812550
ENSMUST00000130216.3	chr17	+	2618	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	0	0	0	0	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	50410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGGAGTATATTTTTATC	NA	False	NA	18	True	ATTAAA	-20	NA	29251601	29262347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
ENSMUST00000130217.2	chr11	-	423	3	FSM	ENSMUSG00000049755.15	ENSMUST00000130217.2	423	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	4	245	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAGTAAAGTATTCAA	647	False	NA	NA	False	AATAAA	-16	NA	58214140	58210563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_58210781_58213394_58213556_58214095
ENSMUST00000130219.2	chr4	+	805	3	FSM	ENSMUSG00000028729.16	ENSMUST00000130219.2	805	3	0	0	0	0	multi-exon	FALSE	canonical	3	2481	junction_2	26.5	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTAGTTGGTGTGTCTGTC	NA	False	NA	NA	False	AATAAA	-40	NA	118478044	118479128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_118478195_118478278_118478363_118478557
ENSMUST00000130236.2	chr11	-	389	2	FSM	ENSMUSG00000059534.9	ENSMUST00000130236.2	389	2	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_1	0	2072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGAGACCGGCTTTTGC	NA	False	NA	-15	True	AATAAA	-10	NA	4654053	4651981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_4652221_4653903
ENSMUST00000130367.8	chr17	+	3187	10	FSM	ENSMUSG00000024457.17	ENSMUST00000130367.8	3187	10	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_1	52.5084355362939	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATCTGGTGCTGTCTCTT	NA	False	NA	31	True	AATAAA	-38	NA	37148034	37170290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_37148157_37148388_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37165175_37165194_37167093_37167117_37167547_37167664_37167880_37167914_37168291
ENSMUST00000130368.8	chr9	-	1162	11	FSM	ENSMUSG00000061559.16	ENSMUST00000130368.8	1162	11	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_9	343.30050975785	5114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATTTGTGAACGTGCT	5443	False	NA	-3	True	AATAAA	-19	NA	54641781	54624442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637941_54638670_54638722_54641758
ENSMUST00000130392.8	chr11	-	1540	3	FSM	ENSMUSG00000087060.8	ENSMUST00000130392.8	1540	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGTGTATCGTTTATTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16901099	16885153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_16886565_16900881_16900931_16901019
ENSMUST00000130425.8	chr6	+	638	4	FSM	ENSMUSG00000042389.14	ENSMUST00000130425.8	638	4	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	54.9201440477192	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGTCTCCCAGCCTTGCT	NA	False	NA	NA	False	TATAAA	-23	NA	115521624	115531233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_115521690_115524782_115524992_115526873_115526956_115530951
ENSMUST00000130469.8	chr19	-	1979	15	FSM	ENSMUSG00000024830.18	ENSMUST00000130469.8	1979	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	32.5877935079116	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTGGCTTTTGCCGGA	2803	False	NA	-2	True	AGTAAA	-14	NA	4213299	4206793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4209564_4209705_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
ENSMUST00000130487.8	chr7	-	405	3	FSM	ENSMUSG00000061787.16	ENSMUST00000130487.8	405	3	0	0	0	0	multi-exon	FALSE	canonical	3	12924	junction_1	227	2504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTATTGTTCTTGC	NA	False	NA	-9	True	AATAAA	-13	NA	80994279	80992479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_80992598_80993482_80993549_80994058
ENSMUST00000130522.8	chr11	+	621	6	FSM	ENSMUSG00000020407.14	ENSMUST00000130522.8	621	6	0	0	0	0	multi-exon	FALSE	canonical	3	2502	junction_1	103.683364142952	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCATTGGCACTTCAGGCG	NA	False	NA	NA	False	NA	NA	NA	9068547	9083322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233
ENSMUST00000130542.2	chr2	+	986	2	FSM	ENSMUSG00000069020.10	ENSMUST00000130542.2	986	2	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29717406	29723648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29717448_29722703
ENSMUST00000130593.8	chr4	-	564	5	FSM	ENSMUSG00000028470.11	ENSMUST00000130593.8	564	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	318.057384759417	2532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTATCCCTGTCTTAAA	6	True	NA	-5	True	AATAAA	-16	NA	43656448	43654226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_43654412_43654512_43654586_43654715_43654791_43654905_43655047_43656358
ENSMUST00000130606.8	chr6	+	1046	10	FSM	ENSMUSG00000015733.14	ENSMUST00000130606.8	1046	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	571.076371619613	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGTTCCATTTCCTTTG	19	True	NA	NA	False	NA	NA	NA	17637108	17665587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660727_17660827_17662096_17662169_17665049_17665113_17665293
ENSMUST00000130609.3	chr7	-	364	3	FSM	ENSMUSG00000062797.15	ENSMUST00000130609.3	364	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	43	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATGAATATTGTGCGAAC	NA	False	NA	NA	False	NA	NA	NA	89590373	89572897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_89572924_89579527_89579669_89590176
ENSMUST00000130611.2	chr2	+	318	2	FSM	ENSMUSG00000045106.13	ENSMUST00000130611.2	318	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTCTTCCTTAATGATT	NA	False	NA	NA	False	NA	NA	NA	104847465	104848249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_104847549_104848014
ENSMUST00000130620.2	chr3	+	640	2	FSM	ENSMUSG00000027879.10	ENSMUST00000130620.2	640	2	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	0	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTGTGTTGTTTCCTTGT	NA	False	NA	NA	False	AATAAA	-44	NA	97808540	97814980	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_97808737_97814536
ENSMUST00000130621.2	chr11	-	886	4	FSM	ENSMUSG00000004394.13	ENSMUST00000130621.2	886	4	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_2	40.4337592722825	1027	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGTAGGGGTCTCGCC	5338	False	NA	NA	False	NA	NA	NA	6224870	6221660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397
ENSMUST00000130645.8	chr3	+	2953	8	FSM	ENSMUSG00000027601.14	ENSMUST00000130645.8	2953	8	0	0	0	0	multi-exon	FALSE	canonical	3	831	junction_1	130.277568667669	2063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTTGTATATTTATCTC	NA	False	NA	50	True	AATAAA	-36	NA	19242273	19274981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
ENSMUST00000130659.8	chr4	+	574	3	FSM	ENSMUSG00000085334.8	ENSMUST00000130659.8	574	3	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_2	16	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTTGTTCAAGTAGGA	NA	False	NA	18	True	AATAAA	-19	NA	126929242	126930806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_126929648_126930355_126930443_126930724
ENSMUST00000130663.10	chr15	+	1660	8	FSM	ENSMUSG00000033088.20	ENSMUST00000130663.10	1660	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_7	63.6226118191786	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATACAGAAATGGATTC	NA	False	NA	NA	False	AATAAA	-25	NA	78867276	78879059	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_78867409_78872091_78872149_78875016_78875086_78875184_78875275_78875528_78875639_78877103_78877633_78878241_78878353_78878497
ENSMUST00000130664.8	chr6	+	1957	5	FSM	ENSMUSG00000032712.17	ENSMUST00000130664.8	1957	5	0	0	0	0	multi-exon	TRUE	canonical	3	64	junction_3	55.879334283794	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAATTAAAATTAATA	NA	False	NA	NA	False	ATTAAA	-39	NA	149210911	149228169	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_149211403_149211819_149211876_149219132_149219207_149226229_149226299_149226902
ENSMUST00000130721.8	chr5	+	873	7	FSM	ENSMUSG00000067367.10	ENSMUST00000130721.8	873	7	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_2	913.07374656523	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACGGCAGAAAAACAGGAAGA	NA	False	NA	38	True	NA	NA	NA	38377825	38388047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_38377980_38380477_38380576_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904
ENSMUST00000130731.2	chr3	-	705	2	FSM	ENSMUSG00000074653.11	ENSMUST00000130731.2	705	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAACTGCCTTCAGTTTG	NA	False	NA	-7	True	AGTAAA	-20	NA	30753959	30752270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_30752864_30753847
ENSMUST00000130778.2	chr3	+	1355	5	FSM	ENSMUSG00000027879.10	ENSMUST00000130778.2	1355	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	133.810500335362	1836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATGCCTTGAAATTATAT	NA	False	NA	-25	True	ATTAAA	-11	NA	97808531	97829167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_97808737_97814540_97814647_97819894_97820056_97821815_97821963_97828431
ENSMUST00000130818.8	chr16	-	938	5	FSM	ENSMUSG00000071533.12	ENSMUST00000130818.8	938	5	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_4	876.141113063415	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATGTTTTATATACAGAT	NA	False	NA	NA	False	AATAAA	-24	NA	55850039	55837361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55845001_55849965
ENSMUST00000130855.8	chr10	-	1925	6	FSM	ENSMUSG00000040415.16	ENSMUST00000130855.8	1925	6	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	50.9643012313521	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031578	127026246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_127026909_127027204_127027423_127028477_127029208_127029598_127029673_127030278_127030504_127031562
ENSMUST00000130881.8	chr2	-	1724	12	FSM	ENSMUSG00000027610.18	ENSMUST00000130881.8	1724	12	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_11	301.306960254025	779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAATGACTCATTGTT	8446	False	NA	-10	True	AATAAA	-11	NA	155434634	155405108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155434613
ENSMUST00000130885.8	chr16	+	721	6	FSM	ENSMUSG00000022711.17	ENSMUST00000130885.8	721	6	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_5	21.3953265925061	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGAGGGAATCACGAACGA	NA	False	NA	NA	False	AATAAA	-17	NA	8455586	8466979	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745
ENSMUST00000130911.8	chr10	-	2554	8	FSM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_4	63.4932103071032	3596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCGCCTTGCGTGTGGGT	NA	False	NA	-4	True	AATAAA	-43	NA	82599978	82584534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
ENSMUST00000130918.8	chr6	-	935	5	FSM	ENSMUSG00000030082.15	ENSMUST00000130918.8	935	5	0	0	0	0	multi-exon	FALSE	canonical	3	957	junction_4	50.4548065103811	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTAACTCGGTGGGAAAG	9227	False	NA	NA	False	NA	NA	NA	88495755	88490792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
ENSMUST00000130946.8	chr17	-	634	5	FSM	ENSMUSG00000059208.16	ENSMUST00000130946.8	634	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	833.202256357963	2025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCTTGCCTTTTTTG	NA	False	NA	-8	True	AATAAA	-13	NA	33879224	33865212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_33865634_33867786_33867839_33877361_33877440_33877843_33877889_33879186
ENSMUST00000130975.2	chr2	+	738	4	FSM	ENSMUSG00000001855.16	ENSMUST00000130975.2	738	4	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	1.88561808316413	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAGTGGAAGGCTTTTAA	NA	False	NA	NA	False	ATTAAA	-16	NA	31864497	31869968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701
ENSMUST00000130990.2	chr12	-	2522	2	FSM	ENSMUSG00000037169.16	ENSMUST00000130990.2	2522	2	0	0	0	0	multi-exon	FALSE	canonical	3	927	junction_1	0	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCGATGTTTTCCTTCC	NA	False	NA	-21	True	AATAAA	-17	NA	12990617	12986096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_12987612_12989610
ENSMUST00000131011.2	chr13	-	540	3	FSM	ENSMUSG00000017778.15	ENSMUST00000131011.2	540	3	0	0	0	0	multi-exon	FALSE	canonical	3	10515	junction_1	2196	133187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGCCTCGTCTCTGCA	NA	False	NA	-14	True	AATAAA	-16	NA	86195023	86192934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_86193028_86193845_86193989_86194719
ENSMUST00000131025.2	chr2	-	652	6	FSM	ENSMUSG00000026956.16	ENSMUST00000131025.2	652	6	0	0	0	0	multi-exon	FALSE	canonical	1	18	junction_3	214.235944696496	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTCTGATTGTCTGTCT	1232	False	NA	-20	True	NA	NA	NA	25254140	25251505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25251752_25252082_25252150_25252674_25252861_25253323_25253397_25253817_25253870_25254112
ENSMUST00000131032.2	chr19	+	868	2	FSM	ENSMUSG00000036450.5	ENSMUST00000131032.2	868	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGATTGTG	NA	False	NA	NA	False	NA	NA	NA	44551288	44552391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_44551494_44551728
ENSMUST00000131052.8	chr4	-	835	6	FSM	ENSMUSG00000028741.14	ENSMUST00000131052.8	835	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_5	422.625318692574	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTTTTTTTGTTGTTT	8669	False	NA	-2	True	AATAAA	-44	NA	139076914	139074745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_139075117_139075231_139075309_139075631_139075784_139075992_139076061_139076316_139076399_139076829
ENSMUST00000131078.8	chr9	+	1199	6	FSM	ENSMUSG00000033543.18	ENSMUST00000131078.8	1199	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	384.735441569918	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919835	69930020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_69919944_69922573_69922693_69923049_69923220_69924100_69924474_69926670_69926798_69929718
ENSMUST00000131130.8	chr11	+	595	3	FSM	ENSMUSG00000083844.9	ENSMUST00000131130.8	595	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	14	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGAAATAGCCCACACTTA	NA	False	NA	NA	False	NA	NA	NA	5712149	5732240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_5712241_5730205_5730654_5732184
ENSMUST00000131141.3	chr4	-	1128	4	FSM	ENSMUSG00000028637.17	ENSMUST00000131141.3	1128	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	4.92160768674447	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGGTGTTAGTAATTT	2105	False	NA	NA	False	NA	NA	NA	119217111	119209443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_119209850_119210266_119210422_119213834_119214045_119216754
ENSMUST00000131170.2	chr11	+	778	6	FSM	ENSMUSG00000078652.10	ENSMUST00000131170.2	778	6	0	0	0	0	multi-exon	FALSE	canonical	3	1173	junction_1	158.018226796784	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCTAATTTCTGGAGAAC	NA	False	NA	96	True	NA	NA	NA	101210659	101212925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
ENSMUST00000131184.8	chr15	+	1819	7	FSM	ENSMUSG00000023051.12	ENSMUST00000131184.8	1819	7	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_2	131.824904913888	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCCTTGTTCTTTTTTGT	NA	False	NA	NA	False	AATAAA	-25	NA	102426626	102432109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102427038_102427556_102427727_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
ENSMUST00000131193.3	chr11	+	1299	9	FSM	ENSMUSG00000020873.16	ENSMUST00000131193.3	1299	9	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	72.2789734293453	1529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGACCCTGCTGCTGC	NA	False	NA	21	True	AATAAA	-22	NA	95275716	95282602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95275940_95276626_95276731_95277336_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
ENSMUST00000131206.8	chr16	+	1405	7	FSM	ENSMUSG00000025616.15	ENSMUST00000131206.8	1405	7	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_5	32.3045404445464	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTTGTCTCTACCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	87251930	87267912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241
ENSMUST00000131208.2	chr7	-	575	2	FSM	ENSMUSG00000000486.14	ENSMUST00000131208.2	575	2	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_1	0	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGCTGCCGGAGTCTTC	NA	False	NA	-7	True	AATAAA	-18	NA	126814297	126813618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126814017_126814120
ENSMUST00000131256.8	chr6	-	961	10	FSM	ENSMUSG00000025607.16	ENSMUST00000131256.8	961	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	71.4927260393896	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGGATTCTAAGTAACACA	NA	False	NA	NA	False	AATAAA	-14	NA	30873665	30835361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_30835553_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
ENSMUST00000131264.8	chr5	+	3732	17	FSM	ENSMUSG00000029267.18	ENSMUST00000131264.8	3732	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	753.559387175291	931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGGTAGCTCTTCATTT	NA	False	NA	103	True	AGTAAA	-13	NA	108213581	108256135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_108213832_108217027_108217230_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252260_108252397_108254453
ENSMUST00000131291.8	chr5	+	2355	17	FSM	ENSMUSG00000029267.18	ENSMUST00000131291.8	2355	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	685.769446953566	977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGAGAGACTTAATTTTT	NA	False	NA	-78	True	CATAAA	-22	NA	108213539	108255029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_108213832_108221172_108221321_108228690_108228708_108228787_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUST00000131303.8	chr16	+	532	4	FSM	ENSMUSG00000075704.18	ENSMUST00000131303.8	532	4	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	7.03957069398096	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTCCCTGACTGTCTCT	NA	False	NA	12	True	NA	NA	NA	18245211	18256562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251
ENSMUST00000131316.2	chr3	+	682	3	FSM	ENSMUSG00000027714.12	ENSMUST00000131316.2	682	3	0	0	0	0	multi-exon	FALSE	canonical	3	467	junction_1	10.5	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTGCACAAGCTTCCC	2760	False	NA	4	True	AATAAA	-16	NA	36616244	36619794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_36616314_36617221_36617407_36619366
ENSMUST00000131332.8	chrX	+	1740	16	FSM	ENSMUSG00000025287.16	ENSMUST00000131332.8	1740	16	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_1	338.793873747577	2452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTACGATTGTGAGTCTCC	NA	False	NA	18	True	AATAAA	-12	NA	154045500	154080642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_154045671_154047031_154047090_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
ENSMUST00000131351.8	chr9	-	3316	6	FSM	ENSMUSG00000059820.15	ENSMUST00000131351.8	3316	6	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_5	32.2800247831379	426	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTCTGTTACTTTTTAA	NA	False	NA	-3	True	AATAAA	-17	NA	50528764	50516539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_50519237_50520671_50520726_50521599_50521750_50523676_50523778_50526782_50526860_50528527
ENSMUST00000131365.2	chr2	-	629	2	FSM	ENSMUSG00000087547.2	ENSMUST00000131365.2	629	2	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	0	3576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACATCTGGCCAAATATG	8707	False	NA	-13	True	NA	NA	NA	157439240	157437502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_157437906_157439014
ENSMUST00000131384.3	chr7	-	1974	8	FSM	ENSMUSG00000053801.19	ENSMUST00000131384.3	1974	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	174.077744770806	845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTCTGAGCTTCTTTGCT	8479	False	NA	0	True	AATAAA	-35	NA	45480368	45474646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45479715_45479834_45480018_45480214_45480296
ENSMUST00000131385.2	chr16	+	673	5	FSM	ENSMUSG00000022711.17	ENSMUST00000131385.2	673	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	21.1113121335458	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGGCCTGCTGCCTGAC	NA	False	NA	NA	False	NA	NA	NA	8466455	8474606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
ENSMUST00000131412.8	chr1	+	2160	21	FSM	ENSMUSG00000062590.14	ENSMUST00000131412.8	2160	21	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_14	12.2982722363753	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCATTCTCTTTATTGT	NA	False	NA	8	True	AATAAA	-13	NA	86082536	86180211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535_86104635_86113826_86113862_86116598_86116711_86118731_86118825_86121998_86122090_86124040_86124165_86125963_86126104_86127559_86127637_86130211_86130287_86135674_86135766_86140771_86140828_86172287_86172393_86179998
ENSMUST00000131457.2	chr2	+	566	3	FSM	ENSMUSG00000087283.2	ENSMUST00000131457.2	566	3	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_2	3	1148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGTGGTATACCCTTAT	9346	False	NA	NA	False	NA	NA	NA	60241868	60242923	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_60242062_60242190_60242353_60242712
ENSMUST00000131618.2	chr9	+	860	2	FSM	ENSMUSG00000041506.16	ENSMUST00000131618.2	860	2	0	0	0	0	multi-exon	FALSE	canonical	3	1473	junction_1	0	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTGTTCCTCTGGTTT	NA	False	NA	23	True	ATTAAA	-23	NA	106361662	106362623	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106362350_106362450
ENSMUST00000131640.8	chrX	+	546	3	FSM	ENSMUSG00000086629.9	ENSMUST00000131640.8	546	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	2.5	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTGTCTCCAATCTCTAT	NA	False	NA	NA	False	AATAAA	-12	NA	107878262	107930289	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_107878380_107879871_107879962_107929950
ENSMUST00000131687.2	chr11	+	612	4	FSM	ENSMUSG00000085860.2	ENSMUST00000131687.2	612	4	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_3	12.3917535302941	1693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	29	True	AATATA	-14	NA	97489336	97513719	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_97489494_97505749_97505855_97509262_97509326_97513432
ENSMUST00000131713.8	chr18	+	744	4	FSM	ENSMUSG00000014504.17	ENSMUST00000131713.8	744	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	857.182594316987	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGTTTATAAGTTTAATAA	NA	False	NA	-74	True	NA	NA	NA	34464175	34469574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_34464313_34467345_34467418_34467509_34467622_34469151
ENSMUST00000131728.4	chr10	-	2483	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	0	0	0	0	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	18222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGTTGTGTGTTCTCTT	8692	False	NA	-7	True	AATAAA	-12	NA	128401856	128393636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
ENSMUST00000131751.7	chr1	-	3583	22	FSM	ENSMUSG00000007097.15	ENSMUST00000131751.7	3583	22	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_18	23.2329229216428	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTCCACAGGTCCCGC	NA	False	NA	-14	True	AATAAA	-18	NA	172125631	172102109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_172102297_172103484_172103577_172103687_172103790_172105823_172105955_172106101_172106562_172106879_172107035_172107234_172107404_172107502_172107654_172108135_172108273_172112066_172112243_172112335_172112526_172113220_172113356_172113530_172113641_172113764_172113964_172114766_172115036_172116867_172116986_172117819_172117955_172118177_172118292_172118759_172118964_172120893_172120954_172121138_172121244_172125447
ENSMUST00000131787.2	chr11	+	462	5	FSM	ENSMUSG00000086841.2	ENSMUST00000131787.2	462	5	0	0	0	0	multi-exon	FALSE	canonical	3	3662	junction_1	404.852056311932	71120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCCAGTGTTTTGGATG	NA	False	NA	NA	False	AATAAA	-18	NA	62493702	62495633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_62493850_62494060_62494109_62494422_62494473_62495228_62495293_62495480
ENSMUST00000131815.8	chr11	-	853	4	FSM	ENSMUSG00000000384.16	ENSMUST00000131815.8	853	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	235.927013195936	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGAGATAAGGCCTATTT	NA	False	NA	-12	True	AATAAA	-6	NA	6576022	6573199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6573462_6573815_6574284_6575148_6575214_6575964
ENSMUST00000131837.8	chr7	-	851	6	FSM	ENSMUSG00000005575.17	ENSMUST00000131837.8	851	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	920.064432526331	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGGGGAATGTTACTGC	9069	False	NA	-24	True	NA	NA	NA	12771574	12769185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_12769682_12769768_12769833_12770138_12770243_12770360_12770400_12770492_12770588_12771521
ENSMUST00000131857.2	chr5	-	358	2	FSM	ENSMUSG00000035234.19	ENSMUST00000131857.2	358	2	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	TTTAAA	-43	NA	100968806	100966225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_100966474_100968696
ENSMUST00000131870.2	chr2	+	724	3	FSM	ENSMUSG00000027245.12	ENSMUST00000131870.2	724	3	0	0	0	0	multi-exon	FALSE	canonical	3	4570	junction_2	83	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTTTTTTTTCTTCAG	NA	False	NA	20	True	AATAAA	-15	NA	121287604	121288787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_121287773_121288126_121288525_121288629
ENSMUST00000131871.8	chr16	+	1737	10	FSM	ENSMUSG00000022884.17	ENSMUST00000131871.8	1737	10	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	631.938131836603	2579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6073	False	NA	NA	False	AATAAA	-18	NA	22926527	22932697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUST00000131909.8	chr8	-	1406	8	FSM	ENSMUSG00000005150.17	ENSMUST00000131909.8	1406	8	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_4	7.90763000177031	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTAGTCTTCATTCTT	NA	False	NA	-2	True	AATAAA	-35	NA	85807261	85801663	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_85801973_85802451_85802567_85802652_85802762_85802845_85802914_85806209_85806337_85806417_85806855_85806941_85807063_85807141
ENSMUST00000131939.6	chr6	-	1902	4	FSM	ENSMUSG00000030035.15	ENSMUST00000131939.6	1902	4	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_3	19.1369334592098	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGTGATTCTGGGTAGA	NA	False	NA	-8	True	ATTAAA	-16	NA	83098540	83096025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83096702_83096848_83097026_83097165_83097858_83098183
ENSMUST00000131940.8	chr2	-	1273	6	FSM	ENSMUSG00000026922.14	ENSMUST00000131940.8	1273	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	210.357219985433	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAGAGTTCTTTCTCC	9602	False	NA	1	True	TATAAA	-45	NA	26494223	26483068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494135
ENSMUST00000132022.2	chr11	-	2087	6	FSM	ENSMUSG00000020152.8	ENSMUST00000132022.2	2087	6	0	0	0	0	multi-exon	FALSE	canonical	3	722	junction_1	59.9486446885999	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGCC	1382	False	NA	NA	False	NA	NA	NA	20062867	20028685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
ENSMUST00000132034.5	chr5	-	576	2	FSM	ENSMUSG00000038803.8	ENSMUST00000132034.5	576	2	0	0	0	0	multi-exon	FALSE	canonical	3	1088	junction_1	0	6886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTTTGTGGTCCCAAA	NA	False	NA	-5	True	NA	NA	NA	31065069	31063861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31064111_31064742
ENSMUST00000132093.8	chr11	-	967	4	FSM	ENSMUSG00000032892.15	ENSMUST00000132093.8	967	4	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_1	54.6036221834738	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCCTTCAAATCTA	7290	False	NA	-2	True	AATAAA	-22	NA	68864615	68863309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_68863855_68863942_68864100_68864266_68864384_68864467
ENSMUST00000132102.2	chr5	+	1426	8	FSM	ENSMUSG00000016503.19	ENSMUST00000132102.2	1426	8	0	0	0	0	multi-exon	FALSE	canonical	3	430	junction_2	50.1141553997328	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCCGACTCTTTGCTGTT	NA	False	NA	15	True	ATTAAA	-15	NA	146885514	146892416	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933
ENSMUST00000132121.8	chr12	+	1147	7	FSM	ENSMUSG00000056899.11	ENSMUST00000132121.8	1147	7	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	24.8310960960916	1644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTGTTTGGGTGTTTAA	NA	False	NA	NA	False	AATAAA	-16	NA	41074088	42002371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_41074145_41074559_41074633_41118308_41118446_41160838_41160943_41675546_41675613_41750437_41750541_42001763
ENSMUST00000132168.2	chr11	+	493	3	FSM	ENSMUSG00000018882.13	ENSMUST00000132168.2	493	3	0	0	0	0	multi-exon	FALSE	canonical	3	2928	junction_1	123	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTATATCATATTGATTTT	NA	False	NA	NA	False	NA	NA	NA	97206733	97212551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_97206766_97207572_97207751_97212268
ENSMUST00000132171.2	chrX	-	843	2	FSM	ENSMUSG00000044348.15	ENSMUST00000132171.2	843	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGTAAAAAGT	NA	False	NA	NA	False	AGTAAA	-7	NA	135939051	135932543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135933250_135938914
ENSMUST00000132193.8	chr7	+	1112	6	FSM	ENSMUSG00000042831.14	ENSMUST00000132193.8	1112	6	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_1	28.3125413906982	1006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGTTTTGGATTTTTTTT	NA	False	NA	8	True	AATAAA	-15	NA	30008212	30013728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30012133_30013343
ENSMUST00000132233.2	chr13	-	709	2	FSM	ENSMUSG00000017778.15	ENSMUST00000132233.2	709	2	0	0	0	0	multi-exon	FALSE	canonical	3	10515	junction_1	0	5144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATTCAATGCCTCGTCT	NA	False	NA	-19	True	AATAAA	-11	NA	86194466	86192939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_86193028_86193845
ENSMUST00000132316.8	chr16	+	2105	8	FSM	ENSMUSG00000022678.17	ENSMUST00000132316.8	2105	8	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	103.03773828168	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAAAAGTGTTTTGTG	NA	False	NA	86	True	AATAAA	-8	NA	13981161	14010782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009581
ENSMUST00000132318.2	chr5	-	488	4	FSM	ENSMUSG00000037007.18	ENSMUST00000132318.2	488	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.05536398239638	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTGGAAGGCAGTTATGT	1751	False	NA	NA	False	AATAAA	-34	NA	138153966	138149188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_138149385_138149466_138149559_138151106_138151232_138153891
ENSMUST00000132403.2	chr9	-	1243	7	FSM	ENSMUSG00000034218.17	ENSMUST00000132403.2	1243	7	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	25.1837690233655	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAACTAGTGGCATTTC	NA	False	NA	NA	False	AATAAA	-8	NA	53447973	53433146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_53433587_53435646_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
ENSMUST00000132413.2	chr6	-	713	4	FSM	ENSMUSG00000030304.12	ENSMUST00000132413.2	713	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	425.360500699766	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTAAATGTTCTTATT	NA	False	NA	NA	False	AAGAAA	-1	NA	148113503	148104198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_148104624_148106273_148106383_148108030_148108174_148113467
ENSMUST00000132445.8	chr3	-	1086	5	FSM	ENSMUSG00000027953.14	ENSMUST00000132445.8	1086	5	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_4	12.4373429638327	663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177830	89175552	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177447_89177692
ENSMUST00000132551.2	chr1	-	1405	2	FSM	ENSMUSG00000038633.6	ENSMUST00000132551.2	1405	2	0	0	0	0	multi-exon	FALSE	canonical	3	1179	junction_1	0	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	182110369	182106061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_182107284_182110186
ENSMUST00000132584.8	chr11	+	695	6	FSM	ENSMUSG00000086003.8	ENSMUST00000132584.8	695	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	57.6520598070876	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGTTTACCTGCTTGTA	NA	False	NA	15	True	AATAAA	-22	NA	94024310	94046602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_94024382_94029312_94029490_94040661_94040792_94042163_94042239_94046281_94046324_94046402
ENSMUST00000132600.2	chr2	-	630	3	FSM	ENSMUSG00000027175.11	ENSMUST00000132600.2	630	3	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_2	0.5	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTTTTAAAATAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	104542511	104535294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_104535547_104536700_104536888_104542320
ENSMUST00000132623.9	chr11	-	1176	6	FSM	ENSMUSG00000020863.16	ENSMUST00000132623.9	1176	6	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_1	126.523673674139	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATATGAGGCATACTAG	NA	False	NA	73	True	AATAAA	-27	NA	94187893	94181886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_94182405_94183232_94183299_94183752_94183859_94183963_94184105_94186745_94186907_94187709
ENSMUST00000132813.8	chr11	+	655	4	FSM	ENSMUSG00000024414.14	ENSMUST00000132813.8	655	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	381.100453365718	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGAGATGGCTCAGCAGT	NA	False	NA	NA	False	NA	NA	NA	94544601	94550744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_94544668_94547233_94547445_94547808_94547877_94550434
ENSMUST00000132866.2	chr6	+	1253	5	FSM	ENSMUSG00000058440.15	ENSMUST00000132866.2	1253	5	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_4	120.692791831161	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTGTCTCTGTGTAAT	NA	False	NA	NA	False	NA	NA	NA	30116113	30140903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
ENSMUST00000132880.3	chr13	-	663	2	FSM	ENSMUSG00000085634.3	ENSMUST00000132880.3	663	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGTTTTTTTTGTTTTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	111686445	111658883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_111659245_111686143
ENSMUST00000132906.8	chr4	-	1874	8	FSM	ENSMUSG00000028923.15	ENSMUST00000132906.8	1874	8	0	0	0	0	multi-exon	TRUE	canonical	1	6	junction_6	160.29029787182	1429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGATGGATATGTTTTT	8500	False	NA	-10	True	AATAAA	-22	NA	140805653	140793822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_140794924_140795505_140795591_140797366_140797545_140799839_140799949_140800818_140800901_140800985_140801074_140802270_140802372_140805523
ENSMUST00000132948.2	chr6	+	1761	17	FSM	ENSMUSG00000030263.14	ENSMUST00000132948.2	1761	17	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	14.1684894660652	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGTGTGGCTGGAACG	NA	False	NA	11	True	AATAAA	-16	NA	145091202	145120654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_145091249_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
ENSMUST00000132955.8	chr13	-	482	4	FSM	ENSMUSG00000061474.12	ENSMUST00000132955.8	482	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	571.611950734257	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTCCAGGTGGTCACTT	NA	False	NA	NA	False	AATAAA	-26	NA	100880639	100872636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100872782_100875521_100875704_100877675_100877740_100880548
ENSMUST00000133032.8	chr17	+	2670	9	FSM	ENSMUSG00000024188.17	ENSMUST00000133032.8	2670	9	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	146.829354609356	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATGTTTACATTAGTGT	NA	False	NA	14	True	ATTAAA	-26	NA	26471957	26499694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26472066_26472947_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
ENSMUST00000133064.8	chr18	-	1055	9	FSM	ENSMUSG00000073599.11	ENSMUST00000133064.8	1055	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	1.78535710713571	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAATTTCTTTTAAGGTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	35855409	35846138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_35846488_35846693_35846791_35848231_35848269_35848475_35848575_35849005_35849129_35849805_35849866_35850205_35850344_35851400_35851440_35855296
ENSMUST00000133100.2	chr13	-	698	3	FSM	ENSMUSG00000021376.12	ENSMUST00000133100.2	698	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	41	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAAAAAAGTAAGA	NA	False	NA	NA	False	NA	NA	NA	47196620	47193173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_47193673_47194874_47195056_47196602
ENSMUST00000133117.8	chr8	+	2099	6	FSM	ENSMUSG00000031570.18	ENSMUST00000133117.8	2099	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	15.0545674132471	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210090	26214914	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26212628_26214106
ENSMUST00000133131.2	chr11	+	1394	10	FSM	ENSMUSG00000020708.13	ENSMUST00000133131.2	1394	10	0	0	0	0	multi-exon	FALSE	canonical	3	2261	junction_6	179.113523556954	19527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4536	False	NA	15	True	AATAAA	-19	NA	106146979	106153946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153518_106153622_106153710_106153834
ENSMUST00000133271.2	chr7	-	1449	8	FSM	ENSMUSG00000002980.15	ENSMUST00000133271.2	1449	8	0	0	0	0	multi-exon	FALSE	canonical	3	510	junction_4	38.4102452319106	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTCGCTAGAAAGAAAGCT	3964	False	NA	NA	False	AAAAAG	-13	NA	19504420	19497597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760_19500987_19502376_19502499_19504331
ENSMUST00000133280.2	chr13	-	1609	2	FSM	ENSMUSG00000118537.2	ENSMUST00000133280.2	1609	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	496	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTGATTTTGTATTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	104314947	104310229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_104311513_104314621
ENSMUST00000133308.3	chr17	-	1479	7	FSM	ENSMUSG00000002076.13	ENSMUST00000133308.3	1479	7	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_1	334.770941590415	1990	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTTTAGGAAGTGGT	NA	False	NA	-13	True	AATAAA	-30	NA	32253511	32165055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_32165786_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
ENSMUST00000133309.2	chr15	-	1373	2	FSM	ENSMUSG00000005360.15	ENSMUST00000133309.2	1373	2	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACCTAAGT	NA	False	NA	NA	False	AATACA	-5	NA	8739965	8737093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_8738324_8739822
ENSMUST00000133316.8	chr5	+	1031	6	FSM	ENSMUSG00000029177.10	ENSMUST00000133316.8	1031	6	0	0	0	0	multi-exon	FALSE	canonical	3	531	junction_2	579.285905231605	5865	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATAAAGCGCTTGAATCT	9186	False	NA	9	True	AATATA	-14	NA	30824240	30831722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_30824458_30827035_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
ENSMUST00000133320.2	chr3	-	1311	8	FSM	ENSMUSG00000000563.18	ENSMUST00000133320.2	1311	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	2067.86248703973	2785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTATAAGTTTCATAC	NA	False	NA	-24	True	AATAAA	-12	NA	105866592	105850017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105865185_105865353_105866177_105866215_105866463
ENSMUST00000133350.8	chrX	-	594	3	FSM	ENSMUSG00000085757.8	ENSMUST00000133350.8	594	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	27.5	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61559675	61554144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_61554605_61558040_61558144_61559644
ENSMUST00000133426.8	chr11	-	3593	12	FSM	ENSMUSG00000020719.15	ENSMUST00000133426.8	3593	12	0	0	0	0	multi-exon	FALSE	canonical	3	3830	junction_7	165.368159266449	3063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	9654	False	NA	-9	True	AATAAA	-45	NA	106679320	106672373	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_106673083_106673294_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
ENSMUST00000133449.8	chr2	-	933	6	FSM	ENSMUSG00000085385.8	ENSMUST00000133449.8	933	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	32.8048776861003	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTCAACCCATGAATT	8289	False	NA	3	True	AATAAA	-32	NA	158203500	158197684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_158197962_158199117_158199184_158201101_158201252_158202383_158202520_158202862_158202991_158203324
ENSMUST00000133459.8	chr8	-	470	4	FSM	ENSMUSG00000004630.19	ENSMUST00000133459.8	470	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.69967317119759	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGAGTTGAGTGTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	3675049	3673376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_3673559_3674507_3674633_3674785_3674901_3675001
ENSMUST00000133461.2	chr13	-	839	2	FSM	ENSMUSG00000021660.15	ENSMUST00000133461.2	839	2	0	0	0	0	multi-exon	FALSE	canonical	3	7051	junction_1	0	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGTTTATCATTTTACT	NA	False	NA	-18	True	AATAAA	-35	NA	98448023	98446405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_98446710_98447488
ENSMUST00000133530.8	chr4	-	646	4	FSM	ENSMUSG00000033379.14	ENSMUST00000133530.8	646	4	0	0	0	0	multi-exon	FALSE	canonical	3	2536	junction_3	23.6690139681023	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGAGGCTTCTGTTGG	NA	False	NA	-5	True	AATAAA	-17	NA	117743091	117741526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000
ENSMUST00000133548.5	chr5	+	562	3	FSM	ENSMUSG00000086219.8	ENSMUST00000133548.5	562	3	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_2	4	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTCATTCCGTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	116576778	116600157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_116576898_116577427_116577496_116599782
ENSMUST00000133553.8	chr7	+	825	6	FSM	ENSMUSG00000030611.11	ENSMUST00000133553.8	825	6	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	143.488814895099	2691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGTGAGTTTTTGTTC	NA	False	NA	3	True	AATAAA	-16	NA	78433103	78442737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_78433172_78433320_78433435_78438422_78438522_78440384_78440515_78441621_78441688_78442389
ENSMUST00000133575.8	chr3	-	1176	5	FSM	ENSMUSG00000027953.14	ENSMUST00000133575.8	1176	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	61.3697808371514	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177833	89175552	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89175906_89175979_89176100_89176356_89176606_89177133_89177447_89177692
ENSMUST00000133595.9	chr17	+	2268	9	FSM	ENSMUSG00000025736.16	ENSMUST00000133595.9	2268	9	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	9.19238815542512	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCCTGGTGGATGCGCCG	NA	False	NA	18	True	NA	NA	NA	26047840	26050817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26048138_26048213_26048313_26048457_26048507_26048579_26048677_26048758_26048828_26048915_26049036_26049112_26049181_26049273_26049409_26049483
ENSMUST00000133613.2	chr4	-	317	2	FSM	ENSMUSG00000059291.16	ENSMUST00000133613.2	317	2	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_1	0	5351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTACAGTTGTGTGTTTGT	NA	False	NA	-4	True	AATAAA	-40	NA	135777837	135777257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135777328_135777590
ENSMUST00000133677.8	chr1	-	935	7	FSM	ENSMUSG00000026049.12	ENSMUST00000133677.8	935	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	163.292596960861	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACGGTTGGTTAATTTGAT	NA	False	NA	NA	False	AATAAA	-2	NA	44141583	44126019	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139096_44141059_44141118_44141487
ENSMUST00000133683.8	chr8	-	632	4	FSM	ENSMUSG00000058833.12	ENSMUST00000133683.8	632	4	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	338.518340222013	2590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70959076	70956944	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70958941
ENSMUST00000133697.2	chr2	-	845	3	FSM	ENSMUSG00000026966.7	ENSMUST00000133697.2	845	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	398.5	5472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCTGCTAGCTACCA	NA	False	NA	-6	True	AATAAA	-16	NA	25162422	25161050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25161594_25161940_25162141_25162320
ENSMUST00000133723.2	chr6	+	552	2	FSM	ENSMUSG00000087626.2	ENSMUST00000133723.2	552	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTAAAAGTCTCTTATTTA	NA	False	NA	NA	False	AGTAAA	-22	NA	52149860	52151039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_52149989_52150615
ENSMUST00000133727.8	chr11	+	985	7	FSM	ENSMUSG00000010362.10	ENSMUST00000133727.8	985	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	529.496117916731	551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTACGTAACAAAGGTGT	NA	False	NA	1	True	AAAAAG	-31	NA	101519214	101526898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101519279_101521063_101521187_101521645_101521806_101523840_101523969_101524627_101524727_101525613_101525700_101526573
ENSMUST00000133750.8	chr7	+	509	3	FSM	ENSMUSG00000040466.17	ENSMUST00000133750.8	509	3	0	0	0	0	multi-exon	FALSE	canonical	2	274	junction_1	60	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACTGAGCACCAACTGTG	NA	False	NA	9	True	ATTAAA	-22	NA	27147478	27159188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27147622_27158680_27158846_27158987
ENSMUST00000133849.2	chr17	-	1673	11	FSM	ENSMUSG00000041319.15	ENSMUST00000133849.2	1673	11	0	0	0	0	multi-exon	FALSE	canonical	3	423	junction_8	40.7603974465412	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGCATTTTATTCCC	794	False	NA	-21	True	AATAAA	-14	NA	23892816	23887591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889527_23889614_23889680_23889765_23889882_23892487
ENSMUST00000133884.8	chr4	-	925	5	FSM	ENSMUSG00000087128.8	ENSMUST00000133884.8	925	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	7.28010988928052	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATGTTCTGGGCTGGA	NA	False	NA	NA	False	CATAAA	-17	NA	94365417	94349167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_94349593_94352666_94352793_94353653_94353778_94356020_94356103_94365249
ENSMUST00000133901.2	chr16	-	523	2	FSM	ENSMUSG00000022889.8	ENSMUST00000133901.2	523	2	0	0	0	0	multi-exon	FALSE	canonical	3	1018	junction_1	0	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCTCATTAAAGTATTTT	NA	False	NA	NA	False	NA	NA	NA	84532118	84531055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_84531502_84532041
ENSMUST00000133967.8	chr11	+	421	4	FSM	ENSMUSG00000070394.11	ENSMUST00000133967.8	421	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_1	597.808404832927	5466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTTTGGTGTCTTTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	69729339	69730439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69729400_69729745_69729778_69730013_69730095_69730191
ENSMUST00000134008.2	chr7	-	447	3	FSM	ENSMUSG00000025499.19	ENSMUST00000134008.2	447	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	34.5	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTGTCTCTGGCTGGA	1291	False	NA	-6	True	AGTAAA	-14	NA	140771890	140770842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140771141_140771254_140771381_140771867
ENSMUST00000134014.2	chr2	+	390	2	FSM	ENSMUSG00000086939.2	ENSMUST00000134014.2	390	2	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGATAGATTATCACTAC	NA	False	NA	NA	False	AATAAA	-16	NA	33379793	33393644	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_33379998_33393458
ENSMUST00000134040.2	chr14	+	661	5	FSM	ENSMUSG00000060126.15	ENSMUST00000134040.2	661	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2408.11035876681	1856	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGAACTCTTTGCTGT	1645	False	NA	4	True	AATAAA	-15	NA	76083339	76085737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_76083388_76083642_76083834_76084133_76084240_76084683_76084801_76085538
ENSMUST00000134050.8	chr4	-	442	4	FSM	ENSMUSG00000028470.11	ENSMUST00000134050.8	442	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	328.783616785671	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTATCCCTGTCTTAA	7059	False	NA	-6	True	AATAAA	-15	NA	43654956	43654227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_43654412_43654512_43654615_43654715_43654821_43654905
ENSMUST00000134082.2	chr4	-	398	2	FSM	ENSMUSG00000028470.11	ENSMUST00000134082.2	398	2	0	0	0	0	multi-exon	FALSE	canonical	3	745	junction_1	0	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGTATCCCTGTCTTA	7288	False	NA	-7	True	AATAAA	-14	NA	43654727	43654228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_43654412_43654512
ENSMUST00000134089.8	chr11	+	1904	6	FSM	ENSMUSG00000020453.18	ENSMUST00000134089.8	1904	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	36.2513448026415	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	5294	False	NA	14	True	ATTAAA	-16	NA	3239280	3259083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_3239348_3243279_3243344_3244455_3244548_3249033_3249206_3256287_3256361_3257647
ENSMUST00000134101.8	chr2	+	812	5	FSM	ENSMUSG00000027374.13	ENSMUST00000134101.8	812	5	0	0	0	0	multi-exon	FALSE	canonical	3	1110	junction_4	81.6160982894919	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACTGCATCATAGAAAAC	4164	False	NA	NA	False	AATAAA	-15	NA	127429338	127437977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583
ENSMUST00000134108.8	chr17	+	2062	11	FSM	ENSMUSG00000002280.12	ENSMUST00000134108.8	2062	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	83.5912076716206	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATCCACTGTGTGTCTG	6920	False	NA	6	True	AATAAA	-18	NA	25992749	26001765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_25999927_26000166_26000353_26000661_26000820_26000989
ENSMUST00000134115.8	chr1	-	3268	5	Antisense	novelGene_ENSMUSG00000062169.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10816	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGAGTTGTGGTCCAAAA	5397	False	NA	NA	False	NA	NA	NA	180996559	180978495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr1_-_180978627_180981299_180981369_180983423_180983537_180989639_180989781_180993745
ENSMUST00000134176.8	chr7	-	1189	7	FSM	ENSMUSG00000030590.16	ENSMUST00000134176.8	1189	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	138.986410206978	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-19	NA	28855608	28851936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28852273_28852746_28852915_28853843_28853957_28854040_28854119_28854576_28854783_28855099_28855235_28855455
ENSMUST00000134185.8	chr11	+	881	7	FSM	ENSMUSG00000020680.16	ENSMUST00000134185.8	881	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	8.74960316560446	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATTGTAAAAAAAAAGGC	8654	False	NA	NA	False	CATAAA	-34	NA	83363911	83380039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750
ENSMUST00000134214.3	chr15	-	899	4	FSM	ENSMUSG00000116358.2	ENSMUST00000134214.3	899	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	890.337139639936	235	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGGCCACTTATGCCCC	NA	False	NA	NA	False	NA	NA	NA	98851432	98830017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98830444_98849068_98849218_98849349_98849573_98851331
ENSMUST00000134287.2	chr1	+	1818	11	FSM	ENSMUSG00000038936.14	ENSMUST00000134287.2	1818	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	60.167765456264	335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCCCCTTTTTTGGT	NA	False	NA	12	True	AATAAA	-19	NA	179495774	179514754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_179496111_179498147_179498261_179503955_179504037_179506444_179506495_179507149_179507281_179508056_179508175_179508997_179509118_179509215_179509273_179511769_179511882_179513260_179513343_179514136
ENSMUST00000134328.8	chr7	-	1790	11	FSM	ENSMUSG00000030541.17	ENSMUST00000134328.8	1790	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	581.342962458479	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGTCTTGATGTGTTT	NA	False	NA	-9	True	AAAAAG	-9	NA	79765080	79744597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748130_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
ENSMUST00000134330.2	chrX	+	930	4	FSM	ENSMUSG00000008682.14	ENSMUST00000134330.2	930	4	0	0	0	0	multi-exon	FALSE	canonical	3	9221	junction_2	231.174296918052	1107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGAGAGCCCTGCATTCC	NA	False	NA	-79	True	AATATA	-25	NA	73315014	73316650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73315325_73315405_73315514_73315784_73315924_73316277
ENSMUST00000134335.2	chr11	-	1320	2	FSM	ENSMUSG00000020935.9	ENSMUST00000134335.2	1320	2	0	0	0	0	multi-exon	FALSE	canonical	3	1127	junction_1	0	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACTGAATTCCACTTGGC	8777	False	NA	-7	True	NA	NA	NA	102888374	102884874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102885999_102888178
ENSMUST00000134364.8	chr2	+	790	7	FSM	ENSMUSG00000054766.14	ENSMUST00000134364.8	790	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6009.9930786612	826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAGAGGTCATCAAAGATG	NA	False	NA	NA	False	NA	NA	NA	29947389	29960315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29947414_29952064_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196
ENSMUST00000134403.2	chr11	+	636	2	FSM	ENSMUSG00000060938.15	ENSMUST00000134403.2	636	2	0	0	0	0	multi-exon	FALSE	canonical	3	14740	junction_1	0	11758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCTGTCTTGTGTGGTGT	NA	False	NA	32	True	ATTAAA	-13	NA	68793678	68795359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_68794146_68795190
ENSMUST00000134462.8	chr7	-	1372	7	FSM	ENSMUSG00000053291.16	ENSMUST00000134462.8	1372	7	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_1	25.5451669705946	1026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTCGGCCTCTGTCATT	NA	False	NA	-4	True	CATAAA	-16	NA	26878240	26867851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875664_26878151
ENSMUST00000134479.8	chr19	-	1438	9	FSM	ENSMUSG00000037916.15	ENSMUST00000134479.8	1438	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	478.184326384711	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAACTTTGCTTTTC	6566	False	NA	3	True	AATAAA	-30	NA	4062666	4057496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4062550
ENSMUST00000134503.8	chr10	+	2140	14	FSM	ENSMUSG00000006345.11	ENSMUST00000134503.8	2140	14	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	59.3897965057474	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGTGTCTTGTGTATGA	NA	False	NA	36	True	NA	NA	NA	75404489	75422034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_75404605_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
ENSMUST00000134542.2	chr13	-	780	5	FSM	ENSMUSG00000021660.15	ENSMUST00000134542.2	780	5	0	0	0	0	multi-exon	FALSE	canonical	3	5972	junction_2	394.186821190156	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGAATAAAGTTTGGAAAG	NA	False	NA	-62	True	AATAAA	-13	NA	98452884	98446449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737
ENSMUST00000134575.8	chr3	+	1644	4	FSM	ENSMUSG00000036873.14	ENSMUST00000134575.8	1644	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	61.937244225282	1409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAACTTAGCATCTTGT	NA	False	NA	3	True	ATTAAA	-17	NA	145643796	145650582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_145644084_145644297_145644425_145644652_145644852_145649551
ENSMUST00000134593.2	chr8	+	707	3	FSM	ENSMUSG00000031767.14	ENSMUST00000134593.2	707	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	1.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTTTAATGTCATTCAT	NA	False	NA	NA	False	ACTAAA	-29	NA	114860381	114875128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_114860441_114863077_114863232_114874634
ENSMUST00000134611.4	chr2	-	1017	5	FSM	ENSMUSG00000017307.17	ENSMUST00000134611.4	1017	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	121.847240428333	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGACCTTTAATAGAACTA	8167	False	NA	2	True	AATAAA	-22	NA	164646801	164634684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164646609
ENSMUST00000134641.8	chr2	-	2120	12	FSM	ENSMUSG00000009207.16	ENSMUST00000134641.8	2120	12	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_8	78.2650719516906	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTGTTAAATATCTAG	NA	False	NA	-14	True	AATAAA	-18	NA	74409275	74351676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74399284_74399473_74401278_74401321_74403881_74403971_74409162
ENSMUST00000134657.3	chr6	+	649	3	FSM	ENSMUSG00000030264.15	ENSMUST00000134657.3	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	355.5	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTTTGTTGTTGTTTT	NA	False	NA	28	True	ATTAAA	-22	NA	113024375	113027998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_113024666_113026299_113026378_113027717
ENSMUST00000134667.8	chr19	+	3159	16	FSM	ENSMUSG00000024807.19	ENSMUST00000134667.8	3159	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	32.5211725905858	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTGGTAGAACGTGTCAC	1243	False	NA	10	True	AATAAA	-13	NA	6097109	6103739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6097361_6097946_6098096_6098304_6098398_6098484_6098638_6098724_6098774_6099179_6099284_6099800_6099928_6100021_6100122_6100199_6100266_6100354_6100472_6100551_6100716_6100970_6101100_6101184_6101341_6101422_6101610_6102357_6102510_6102577
ENSMUST00000134709.2	chr16	+	471	2	FSM	ENSMUSG00000046516.11	ENSMUST00000134709.2	471	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTTATTAAAAAACAGAAG	NA	False	NA	-12	True	GATAAA	-17	NA	38169601	38173085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_38169692_38172704
ENSMUST00000134732.8	chr11	-	2201	13	FSM	ENSMUSG00000018669.15	ENSMUST00000134732.8	2201	13	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	315.392733570209	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTCACCTTTACTGGCT	NA	False	NA	-13	True	GATAAA	-16	NA	96807322	96798251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96804207_96804309_96804490_96804623_96806976_96807023_96807209
ENSMUST00000134751.8	chr4	-	478	4	FSM	ENSMUSG00000028964.15	ENSMUST00000134751.8	478	4	0	0	0	0	multi-exon	FALSE	canonical	3	5627	junction_3	104.487107125978	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTGGCAGTGAGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	150994325	150989582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_150989767_150991496_150991599_150992774_150992881_150994239
ENSMUST00000134757.8	chrX	+	1862	13	FSM	ENSMUSG00000031105.17	ENSMUST00000134757.8	1862	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	49.7730264969558	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	14	True	ATTAAA	-17	NA	47712454	47751171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_47712706_47712838_47713084_47714472_47714518_47717012_47717061_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
ENSMUST00000134760.2	chr4	-	579	4	FSM	ENSMUSG00000063882.13	ENSMUST00000134760.2	579	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	488.184618993903	21220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7694	False	NA	-7	True	AATAAA	-17	NA	115932231	115924161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_115924370_115927059_115927222_115927864_115927955_115932112
ENSMUST00000134789.2	chr2	+	1407	5	FSM	ENSMUSG00000027091.15	ENSMUST00000134789.2	1407	5	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_1	80.8223360216716	3576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGGCCTTTTTCTTTTA	NA	False	NA	28	True	AATAAA	-36	NA	83490353	83494966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_83490585_83491490_83491638_83491776_83491879_83492492_83492617_83494163
ENSMUST00000134797.8	chr10	+	486	3	FSM	ENSMUSG00000020225.11	ENSMUST00000134797.8	486	3	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_1	20.5	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGCTTGTCTGTGCTTT	NA	False	NA	NA	False	AATAAA	-16	NA	120044684	120053622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_120044848_120051445_120051555_120053408
ENSMUST00000134812.2	chr1	+	735	2	FSM	ENSMUSG00000064246.11	ENSMUST00000134812.2	735	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACGGTGTGCTATAATTG	5623	False	NA	NA	False	AATAAA	-11	NA	134116863	134117765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_134117052_134117218
ENSMUST00000134840.8	chr1	-	1120	8	FSM	ENSMUSG00000026189.14	ENSMUST00000134840.8	1120	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	115.181666625078	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTTTAAGGATTATTTA	NA	False	NA	-1	True	AATAAA	-24	NA	72323418	72298325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_72298593_72301110_72301223_72306565_72306677_72309435_72309533_72314044_72314127_72314811_72314962_72316445_72316580_72323251
ENSMUST00000134846.8	chr5	+	1007	7	FSM	ENSMUSG00000029177.10	ENSMUST00000134846.8	1007	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	786.091474038204	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTTTGCATCTTTTACT	9201	False	NA	11	True	NA	NA	NA	30824255	30831659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_30824458_30826342_30826397_30827035_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
ENSMUST00000134857.2	chr10	-	597	2	FSM	ENSMUSG00000020232.18	ENSMUST00000134857.2	597	2	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_1	0	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAAGTTAATATTTGTGG	NA	False	NA	-12	True	AATAAA	-16	NA	81182564	81181885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_81182312_81182393
ENSMUST00000134932.2	chr17	+	1950	6	FSM	ENSMUSG00000024160.17	ENSMUST00000134932.2	1950	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	61.4504678582678	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTCTATTGTTTATC	NA	False	NA	NA	False	ATTAAA	-25	NA	25105732	25111126	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25106080_25106753_25106892_25109256_25109435_25109541_25109910_25109984_25110111_25110333
ENSMUST00000134939.9	chr9	+	2374	23	FSM	ENSMUSG00000032604.17	ENSMUST00000134939.9	2374	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	117.634370153125	1202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCTCTCTGTTGTCTGCCT	NA	False	NA	18	True	AATAAA	-21	NA	108385258	108393140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
ENSMUST00000135011.2	chr2	+	510	2	FSM	ENSMUSG00000016344.15	ENSMUST00000135011.2	510	2	0	0	0	0	multi-exon	FALSE	canonical	3	861	junction_1	0	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	4003	False	NA	1	True	AATAAA	-17	NA	180829706	180830297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_180829894_180829974
ENSMUST00000135017.2	chr3	+	1405	7	FSM	ENSMUSG00000005687.15	ENSMUST00000135017.2	1405	7	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	1366.36225268249	3287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTTCATTTTAATCCC	5046	False	NA	NA	False	NA	NA	NA	103079087	103086482	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_103079182_103079263_103079357_103080549_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
ENSMUST00000135037.8	chr11	+	901	2	FSM	ENSMUSG00000087497.8	ENSMUST00000135037.8	901	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	97	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTTTCATGTTTCTTA	4234	False	NA	NA	False	AATAAA	-22	NA	63970309	63974085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_63970604_63973478
ENSMUST00000135091.2	chr2	-	800	2	FSM	ENSMUSG00000051319.7	ENSMUST00000135091.2	800	2	0	0	0	0	multi-exon	FALSE	canonical	3	537	junction_1	0	9425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGACCAAAGCCTTGGTT	NA	False	NA	-5	True	GATAAA	-14	NA	127634408	127633307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_127633753_127634053
ENSMUST00000135123.3	chr17	-	1476	4	FSM	ENSMUSG00000024007.16	ENSMUST00000135123.3	1476	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	716.343182808042	896	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTTGTGGTCTAGTAT	9927	False	NA	-28	True	AATAAA	-19	NA	29482922	29469805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_29470700_29471223_29471293_29480710_29481147_29482845
ENSMUST00000135131.2	chr12	-	1563	4	FSM	ENSMUSG00000037904.15	ENSMUST00000135131.2	1563	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	45.784519460427	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGAGGGATCTGCCTGGT	NA	False	NA	-9	True	NA	NA	NA	110945429	110942862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_110943983_110944097_110944205_110944381_110944562_110945273
ENSMUST00000135136.8	chr17	-	943	4	FSM	ENSMUSG00000034647.16	ENSMUST00000135136.8	943	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	25.5734237050888	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATTTTTTAGGAAATTA	NA	False	NA	NA	False	AATAAA	-30	NA	66384034	66344133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_66344635_66356780_66356929_66359948_66360087_66383878
ENSMUST00000135148.2	chr11	-	562	4	FSM	ENSMUSG00000018921.12	ENSMUST00000135148.2	562	4	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	310.061284264901	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTCAGATCTTTTAAGTG	NA	False	NA	NA	False	NA	NA	NA	70300857	70293456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70293580_70296452_70296559_70297082_70297148_70300589
ENSMUST00000135198.2	chr15	+	456	2	FSM	ENSMUSG00000022477.14	ENSMUST00000135198.2	456	2	0	0	0	0	multi-exon	FALSE	canonical	3	1775	junction_1	0	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTAGCCTATGCTCTCT	NA	False	NA	NA	False	NA	NA	NA	81756684	81773889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_81756750_81773498
ENSMUST00000135213.8	chrX	-	416	3	FSM	ENSMUSG00000031387.15	ENSMUST00000135213.8	416	3	0	0	0	0	multi-exon	FALSE	canonical	3	1965	junction_1	27	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTTGTGTGCGCGCCTCT	NA	False	NA	-3	True	AATAAA	-17	NA	72970007	72965727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72965870_72965956_72966045_72969821
ENSMUST00000135222.9	chr1	+	2297	8	FSM	ENSMUSG00000070644.14	ENSMUST00000135222.9	2297	8	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_5	9.79379228628721	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTTGGGATCTGATTAG	NA	False	NA	25	True	ATTAAA	-35	NA	133291309	133308074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_133291757_133293313_133293574_133296487_133296611_133300872_133301016_133302264_133302349_133304643_133304790_133306186_133306261_133307054
ENSMUST00000135241.8	chr1	+	1461	8	FSM	ENSMUSG00000026696.16	ENSMUST00000135241.8	1461	8	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_7	26.2336440784092	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGTGAAGGCTGCAGGT	NA	False	NA	116	True	AATAAA	-21	NA	162398158	162422934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387_162409439_162415764_162415866_162417033_162417114_162420194_162420247_162422114
ENSMUST00000135265.2	chr2	+	540	2	FSM	ENSMUSG00000026914.16	ENSMUST00000135265.2	540	2	0	0	0	0	multi-exon	FALSE	canonical	3	2185	junction_1	0	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTCCCTCTGCTCCCCA	8595	False	NA	NA	False	AAAACA	-21	NA	61542085	61551195	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_61542218_61550787
ENSMUST00000135269.8	chr8	-	2461	6	FSM	ENSMUSG00000031601.17	ENSMUST00000135269.8	2461	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	206.645203186524	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTATATGGTTGTGACTG	NA	False	NA	-8	True	AATAAA	-16	NA	40964759	40945587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_40947157_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
ENSMUST00000135345.2	chr5	+	632	2	FSM	ENSMUSG00000041453.13	ENSMUST00000135345.2	632	2	0	0	0	0	multi-exon	FALSE	canonical	3	8667	junction_1	0	5580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	False	NA	2	True	AATAAA	-16	NA	146772015	146772796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_146772525_146772673
ENSMUST00000135369.2	chr11	+	688	4	FSM	ENSMUSG00000034121.13	ENSMUST00000135369.2	688	4	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	6.68331255192114	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAACAAGGCAGGCCGTGC	846	False	NA	NA	False	NA	NA	NA	87752762	87754087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_87752945_87753393_87753477_87753566_87753665_87753762
ENSMUST00000135395.8	chr9	+	924	7	FSM	ENSMUSG00000032249.15	ENSMUST00000135395.8	924	7	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	197.739517210563	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCCCTCCTATTCCTGC	NA	False	NA	NA	False	NA	NA	NA	62249356	62284954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_62249534_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
ENSMUST00000135417.2	chr15	-	2412	2	FSM	ENSMUSG00000058600.14	ENSMUST00000135417.2	2412	2	0	0	0	0	multi-exon	FALSE	canonical	3	5662	junction_1	0	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	423	False	NA	-20	True	AATAAA	-27	NA	34443306	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_34442927_34443170
ENSMUST00000135446.8	chr8	-	520	4	FSM	ENSMUSG00000090137.9	ENSMUST00000135446.8	520	4	0	0	0	0	multi-exon	FALSE	canonical	3	602	junction_3	10349.9061616787	1924	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTCATACCTGGCATGTG	NA	False	NA	-69	True	AATAAA	-4	NA	70963451	70960977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70963333
ENSMUST00000135458.2	chr2	+	560	5	FSM	ENSMUSG00000017299.14	ENSMUST00000135458.2	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	592	junction_3	38.3699100858993	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTTGTGTTGTGTTCAGT	NA	False	NA	13	True	NA	NA	NA	164596058	164601479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171
ENSMUST00000135464.2	chr5	+	1630	4	FSM	ENSMUSG00000029390.14	ENSMUST00000135464.2	1630	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1678.67149853686	893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGTATTTTGTGTTT	NA	False	NA	2	True	AATAAA	-12	NA	124681142	124688559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124681228_124681549_124681571_124684958_124685067_124687143
ENSMUST00000135467.8	chr7	-	1961	14	FSM	ENSMUSG00000074358.10	ENSMUST00000135467.8	1961	14	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_10	61.8715026505473	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCTAGTGTGTGATTCA	2777	False	NA	-2	True	AATAAA	-17	NA	18644323	18624808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627703_18627775_18627859_18628071_18633482_18633608_18634843_18635002_18637394_18637478_18637706_18637865_18644057
ENSMUST00000135484.8	chr1	+	1570	7	FSM	ENSMUSG00000026201.13	ENSMUST00000135484.8	1570	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	83.8424448328861	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATATTTTAGGTCAATG	NA	False	NA	6	True	AATAAA	-14	NA	75187519	75190883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_75187644_75187883_75188059_75188568_75188789_75189243_75189651_75189776_75189873_75190219_75190342_75190457
ENSMUST00000135573.8	chr4	+	2294	6	FSM	ENSMUSG00000028691.13	ENSMUST00000135573.8	2294	6	0	0	0	0	multi-exon	FALSE	canonical	3	22651	junction_3	699.316637868713	52574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAAGTTCATTGGGTATC	NA	False	NA	NA	False	AATAAA	-15	NA	116542740	116558019	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
ENSMUST00000135582.8	chr4	-	1771	10	FSM	ENSMUSG00000009640.12	ENSMUST00000135582.8	1771	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_9	54.4190416928251	1159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTGTTTCCTCACTTCC	NA	False	NA	-35	True	AATAGA	-20	NA	117539450	117531877	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539191_117539410
ENSMUST00000135602.3	chr3	-	500	4	FSM	ENSMUSG00000037152.12	ENSMUST00000135602.3	500	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2769.52864020015	6735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTAGACGGAGTCACTGG	NA	False	NA	-32	True	AATAAA	-18	NA	51316087	51312898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_51313041_51314756_51314834_51315565_51315670_51315910
ENSMUST00000135655.2	chr10	+	1057	2	FSM	ENSMUSG00000006732.15	ENSMUST00000135655.2	1057	2	0	0	0	0	multi-exon	FALSE	canonical	3	433	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	126877825	126879871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_126877940_126878928
ENSMUST00000135690.2	chrX	+	523	5	FSM	ENSMUSG00000008682.14	ENSMUST00000135690.2	523	5	0	0	0	0	multi-exon	FALSE	canonical	2	85	junction_4	3846.15960244762	2928	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACCCTACCAAATCGTTC	NA	False	NA	-38	True	NA	NA	NA	73314584	73316691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316520
ENSMUST00000135691.2	chr3	-	477	4	FSM	ENSMUSG00000062006.13	ENSMUST00000135691.2	477	4	0	0	0	0	multi-exon	FALSE	canonical	3	6284	junction_3	871.596619237745	22604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAGTAATAAAAATCAA	NA	False	NA	-44	True	AATAGA	-11	NA	130523991	130520512	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_130520609_130522396_130522501_130522699_130522952_130523966
ENSMUST00000135708.2	chr17	-	526	3	FSM	ENSMUSG00000040048.15	ENSMUST00000135708.2	526	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1144.5	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTAAAGCCTACCAGGAC	NA	False	NA	NA	False	NA	NA	NA	24943386	24941378	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24941495_24941628_24941813_24943160
ENSMUST00000135711.8	chrX	-	2125	7	FSM	ENSMUSG00000031387.15	ENSMUST00000135711.8	2125	7	0	0	0	0	multi-exon	FALSE	canonical	3	1962	junction_4	102.832252830628	976	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTTGTGTGCGCGCCTC	NA	False	NA	-4	True	AATAAA	-16	NA	72974423	72965728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72974124_72974319
ENSMUST00000135724.2	chr3	-	437	2	FSM	ENSMUSG00000062908.13	ENSMUST00000135724.2	437	2	0	0	0	0	multi-exon	FALSE	canonical	3	875	junction_1	0	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATTAACTGTAACATAC	161	False	NA	NA	False	AATAAA	-28	NA	153650100	153647238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_153647608_153650032
ENSMUST00000135757.3	chr6	-	289	3	FSM	ENSMUSG00000048794.15	ENSMUST00000135757.3	289	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	1.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGCCTTTCCCGTGAAC	NA	False	NA	NA	False	AATAAA	-14	NA	90405377	90403465	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_90403632_90404419_90404526_90405360
ENSMUST00000135773.8	chr8	-	725	4	FSM	ENSMUSG00000058833.12	ENSMUST00000135773.8	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_3	46.3968389727864	7781	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCATCAGCTCTGTATCT	NA	False	NA	-5	True	AATAAA	-20	NA	70959371	70956941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70959146
ENSMUST00000135780.2	chr4	-	506	3	FSM	ENSMUSG00000014592.22	ENSMUST00000135780.2	506	3	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	493.5	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTTCATCTTTTTAAAA	NA	False	NA	-23	True	AATAAA	-10	NA	151946195	151876686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_151876960_151914874_151914994_151946081
ENSMUST00000135808.8	chr19	-	1309	14	FSM	ENSMUSG00000063698.10	ENSMUST00000135808.8	1309	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_12	6.9961950774782	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATCAAAAGGTATACCTTA	NA	False	NA	NA	False	AATAAA	-30	NA	60849917	60827185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_60827489_60830556_60830675_60832646_60832733_60839396_60839513_60840449_60840529_60842124_60842191_60842301_60842359_60842444_60842499_60844264_60844291_60845647_60845703_60845787_60845815_60847101_60847177_60848466_60848533_60849736
ENSMUST00000135812.3	chr3	-	398	4	FSM	ENSMUSG00000033285.16	ENSMUST00000135812.3	398	4	0	0	0	0	multi-exon	FALSE	canonical	3	661	junction_2	32.7244387100664	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAAAACGAAAAAACAG	NA	False	NA	NA	False	NA	NA	NA	100048937	100046050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870
ENSMUST00000135877.8	chr1	+	691	6	FSM	ENSMUSG00000025967.17	ENSMUST00000135877.8	691	6	0	0	0	0	multi-exon	FALSE	canonical	1	59	junction_1	1289.84206785172	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACGTACAGTCCATGGAT	NA	False	NA	-58	True	NA	NA	NA	63216303	63218727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_63216410_63216881_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
ENSMUST00000135927.2	chr2	-	1592	9	FSM	ENSMUSG00000002109.15	ENSMUST00000135927.2	1592	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	32.9030298756817	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCATGGCCAATAAAAGCAT	3019	False	NA	-75	True	TTTAAA	-19	NA	91067305	91041965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047651_91047752_91049088_91049235_91064452_91064645_91065159_91065297_91067034
ENSMUST00000135941.8	chr1	+	1735	4	FSM	ENSMUSG00000006412.11	ENSMUST00000135941.8	1735	4	0	0	0	0	multi-exon	FALSE	canonical	3	1860	junction_3	112.860779527503	36394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGCTCTATTTTTTGT	NA	False	NA	5	True	NA	NA	NA	171173237	171186822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_171173355_171184097_171184187_171184272_171184397_171185417
ENSMUST00000135949.2	chrX	+	1764	11	FSM	ENSMUSG00000062070.13	ENSMUST00000135949.2	1764	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1444.2652838035	27181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGATCTATTAAACAATAAAG	NA	False	NA	NA	False	NA	NA	NA	105230768	105247267	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243722_105243943_105246044_105246223_105246442_105246542_105246844
ENSMUST00000135984.8	chr6	+	2065	20	FSM	ENSMUSG00000030263.14	ENSMUST00000135984.8	2065	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	17.1318821219839	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGTGTGGCTGGAACG	NA	False	NA	11	True	AATAAA	-16	NA	145061378	145120654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_145061458_145083185_145083334_145083771_145083813_145083907_145083990_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
ENSMUST00000136026.8	chr8	+	1686	5	FSM	ENSMUSG00000003824.13	ENSMUST00000136026.8	1686	5	0	0	0	0	multi-exon	FALSE	canonical	3	1047	junction_2	374.154045815357	3788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATGTGTGCTGTTCTCTTC	NA	False	NA	NA	False	CATAAA	-14	NA	85598739	85614850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85598883_85599348_85599462_85610059_85610214_85612563_85612753_85613763
ENSMUST00000136059.8	chr11	-	801	3	FSM	ENSMUSG00000052298.13	ENSMUST00000136059.8	801	3	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_1	84	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGCCTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54678467	54630811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_54631377_54647231_54647386_54678385
ENSMUST00000136123.8	chr7	-	1298	2	FSM	ENSMUSG00000045251.14	ENSMUST00000136123.8	1298	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6925	False	NA	-4	True	ATTAAA	-17	NA	127021199	127018138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127018814_127020576
ENSMUST00000136129.2	chr15	+	779	3	FSM	ENSMUSG00000022313.11	ENSMUST00000136129.2	779	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	172.5	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGCATCTTCAGTTGTT	NA	False	NA	21	True	AGTAAA	-18	NA	51741137	51746079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_51741209_51744411_51744587_51745546
ENSMUST00000136130.2	chr4	-	704	3	FSM	ENSMUSG00000062627.10	ENSMUST00000136130.2	704	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	6	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACTCAGTTTTCTTATAT	NA	False	NA	NA	False	NA	NA	NA	94867312	94860669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_94861226_94863453_94863530_94867240
ENSMUST00000136155.2	chrX	-	1212	4	FSM	ENSMUSG00000031146.7	ENSMUST00000136155.2	1212	4	0	0	0	0	multi-exon	FALSE	canonical	3	2052	junction_3	118.4229707447	5098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGTTTAAGTCTATAAT	NA	False	NA	NA	False	AATAAA	-9	NA	7537611	7534198	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_7534746_7535165_7535257_7535653_7535998_7537381
ENSMUST00000136207.2	chr2	-	1201	7	FSM	ENSMUSG00000026779.7	ENSMUST00000136207.2	1201	7	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_4	13.2759180473518	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTAGTTGTGATACTGG	NA	False	NA	NA	False	TATAAA	-16	NA	23045909	23026695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045690
ENSMUST00000136244.2	chr11	+	486	3	FSM	ENSMUSG00000061086.13	ENSMUST00000136244.2	486	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	22	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAATTAAACATTCTAACA	NA	False	NA	NA	False	NA	NA	NA	104475789	104486579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_104475841_104476552_104476598_104486189
ENSMUST00000136252.8	chr16	-	1362	10	FSM	ENSMUSG00000033918.17	ENSMUST00000136252.8	1362	10	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_6	534.615126360388	15065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121095	20098569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20112047_20112153_20116342_20116484_20116880_20117077_20120958
ENSMUST00000136263.4	chr6	+	1601	7	FSM	ENSMUSG00000030271.15	ENSMUST00000136263.4	1601	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	81.0445693567572	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACGCAGTGAAGAGTGAG	2335	False	NA	10	True	AATAAA	-19	NA	113303959	113311145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_113304324_113305325_113305574_113306106_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
ENSMUST00000136342.9	chr4	-	3152	18	FSM	ENSMUSG00000028809.17	ENSMUST00000136342.9	3152	18	0	0	0	0	multi-exon	FALSE	canonical	3	663	junction_5	197.323579826916	812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGTTTGACTATTGTTGG	NA	False	NA	-16	True	TTTAAA	-4	NA	135080555	135048404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
ENSMUST00000136410.8	chr2	-	2822	19	FSM	ENSMUSG00000033808.17	ENSMUST00000136410.8	2822	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	164.737126925458	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTAGTGTCTCTCTCAT	NA	False	NA	NA	False	TATAAA	-10	NA	120234576	120185796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_120187020_120190014_120190046_120190519_120190573_120193359_120193422_120199724_120199829_120200923_120200983_120202004_120202114_120204968_120205041_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
ENSMUST00000136447.2	chrX	+	1412	4	FSM	ENSMUSG00000086877.8	ENSMUST00000136447.2	1412	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	56.8057117628931	943	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCATGAATGCTATTTCA	NA	False	NA	NA	False	ATTAAA	-31	NA	20828352	20852976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_20828897_20833967_20834048_20851664_20851705_20852228
ENSMUST00000136454.2	chr11	+	635	4	FSM	ENSMUSG00000085628.5	ENSMUST00000136454.2	635	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.942809041582063	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGGCCTGAGCAGGACAA	NA	False	NA	NA	False	ATTAAA	-16	NA	85125996	85129130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_85126159_85127965_85128074_85128236_85128341_85128869
ENSMUST00000136481.8	chr2	+	3048	21	FSM	ENSMUSG00000002455.15	ENSMUST00000136481.8	3048	21	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_20	98.1260796118952	1111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGAGTTATGTTGGGGCT	2491	False	NA	19	True	ATTAAA	-7	NA	181243108	181297444	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278685_181278905_181282384_181282508_181287263_181287386_181289081_181289221_181290818_181290939_181291214_181291392_181291889_181292024_181292878_181292971_181294226_181294342_181296628_181296755_181297213
ENSMUST00000136531.2	chr17	-	978	3	FSM	ENSMUSG00000086930.2	ENSMUST00000136531.2	978	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	3	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTGGAAAGGGTTGTTT	NA	False	NA	-8	True	AATAAA	-18	NA	48012921	48010895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_48011368_48011669_48011793_48012538
ENSMUST00000136579.3	chr19	-	734	6	FSM	ENSMUSG00000024914.17	ENSMUST00000136579.3	734	6	0	0	0	0	multi-exon	FALSE	canonical	3	999	junction_1	82.8700187039921	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTTCTTAAATTTATTAAA	NA	False	NA	NA	False	NA	NA	NA	5474542	5472870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5473054_5473358_5473448_5473587_5473682_5473799_5473920_5474209_5474304_5474388
ENSMUST00000136591.8	chr15	-	2060	12	FSM	ENSMUSG00000044224.17	ENSMUST00000136591.8	2060	12	0	0	0	0	multi-exon	TRUE	canonical	3	660	junction_1	60.8163473021321	901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTGCTTCAGTGATTTA	-35	True	NA	-15	True	ATTAAA	-23	NA	10470602	10446841	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_10447313_10447781_10447858_10449661_10449835_10451640_10451684_10452291_10452451_10454855_10454944_10460040_10460193_10461205_10461511_10461961_10462085_10462308_10462433_10463972_10464067_10470350
ENSMUST00000136618.8	chr16	+	1014	9	FSM	ENSMUSG00000022681.16	ENSMUST00000136618.8	1014	9	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	197.353743313878	861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTAGATGACTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	13637169	13653312	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_13637301_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
ENSMUST00000136628.2	chr2	+	471	2	FSM	ENSMUSG00000074754.5	ENSMUST00000136628.2	471	2	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	0	5320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCAGTGTCTTCTTGAAG	NA	False	NA	NA	False	NA	NA	NA	144435973	144437286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_144436126_144436967
ENSMUST00000136652.8	chr7	-	756	5	FSM	ENSMUSG00000030615.13	ENSMUST00000136652.8	756	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_2	308.308591349641	6508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGCAACATTAAAATACTT	1666	False	NA	NA	False	AATAAA	-19	NA	90106416	90099907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_90100144_90100750_90100866_90101936_90102109_90104631_90104728_90106279
ENSMUST00000136661.8	chr14	-	695	6	FSM	ENSMUSG00000021792.16	ENSMUST00000136661.8	695	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	130.026766475215	1579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTGTAAAGAAAATCAAGCT	NA	False	NA	NA	False	AAAAAG	-39	NA	40730223	40716528	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726161_40730155
ENSMUST00000136684.2	chr2	-	1300	4	FSM	ENSMUSG00000027108.16	ENSMUST00000136684.2	1300	4	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	2.62466929133727	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	73044756	73028944	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_73029873_73033668_73033813_73043203_73043305_73044629
ENSMUST00000136757.8	chr7	-	789	4	FSM	ENSMUSG00000035642.17	ENSMUST00000136757.8	789	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	30.4740326617051	697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCATTAGCGATCTCAC	NA	False	NA	NA	False	AATAAA	-31	NA	97228704	97199537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97228572
ENSMUST00000136768.8	chr4	-	556	4	FSM	ENSMUSG00000073888.14	ENSMUST00000136768.8	556	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	19.3045763140937	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTCTCTTTTATTTCA	569	False	NA	5	True	AATAAA	-28	NA	41773601	41769466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_41769655_41769843_41769977_41771137_41771236_41773464
ENSMUST00000136800.2	chr18	+	1503	4	FSM	ENSMUSG00000090000.3	ENSMUST00000136800.2	1503	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	763.929461548789	8843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATATTAAGCGTCTGATTT	NA	False	NA	8	True	AATAAA	-10	NA	77017740	77029301	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_77017913_77018319_77018456_77027263_77027366_77028208
ENSMUST00000136801.8	chr4	+	1536	5	FSM	ENSMUSG00000000085.17	ENSMUST00000136801.8	1536	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	26.8735464723211	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGTGTCTTTTTAACCAG	NA	False	NA	12	True	AATAAA	-14	NA	120374822	120387381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_120374904_120379651_120379847_120382194_120382261_120385352_120385496_120386330
ENSMUST00000136804.2	chr6	+	855	3	FSM	ENSMUSG00000030335.7	ENSMUST00000136804.2	855	3	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	333	918	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTCTGCCTCGTTCCTAAG	NA	False	NA	49	True	NA	NA	NA	125168763	125170521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_125169172_125169478_125169590_125170185
ENSMUST00000136810.8	chr11	-	964	5	FSM	ENSMUSG00000020182.17	ENSMUST00000136810.8	964	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	46.0271658914602	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTATTGAGTAAGCGTC	NA	False	NA	-3	True	AATAAA	-19	NA	11772921	11764102	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11772791
ENSMUST00000136872.8	chr2	+	2596	13	FSM	ENSMUSG00000027282.18	ENSMUST00000136872.8	2596	13	0	0	0	0	multi-exon	FALSE	canonical	3	2037	junction_4	251.273534000079	15832	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGGTGTGACTTAGTGGT	96	False	NA	NA	False	ATTAAA	-12	NA	90677498	90697154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
ENSMUST00000136873.8	chr7	+	734	5	FSM	ENSMUSG00000002043.18	ENSMUST00000136873.8	734	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	250.202293154959	1162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGACCTGTGCAGTGCT	465	False	NA	14	True	AGTAAA	-15	NA	19242594	19250063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_19242758_19248346_19248465_19248949_19249016_19249128_19249223_19249770
ENSMUST00000136874.4	chr4	+	2121	14	FSM	ENSMUSG00000073791.14	ENSMUST00000136874.4	2121	14	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	5.10481846862679	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTGTCTTGTTAATTG	2075	False	NA	NA	False	AATACA	-19	NA	99717736	99769985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_99717792_99719629_99719818_99731496_99731709_99732648_99732736_99735289_99735486_99735908_99736028_99746056_99746199_99754598_99754709_99757733_99757892_99758840_99758975_99761882_99762032_99766776_99766987_99768120_99768229_99769732
ENSMUST00000136913.2	chr8	-	671	5	FSM	ENSMUSG00000058833.12	ENSMUST00000136913.2	671	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	340.250918441082	8648	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCTTTCCCATCAGCTC	NA	False	NA	-12	True	AATAAA	-13	NA	70959387	70956948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70957179_70957633_70957711_70958405_70958611_70959146_70959230_70959311
ENSMUST00000136933.8	chr2	-	2413	10	FSM	ENSMUSG00000005882.19	ENSMUST00000136933.8	2413	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	134.914879429061	1788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTCCTGGAATGGATGGA	NA	False	NA	-31	True	AATAAA	-20	NA	155771980	155688813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752388_155753660_155753757_155763554_155763648_155771932
ENSMUST00000136976.7	chr1	-	1845	12	FSM	ENSMUSG00000013593.13	ENSMUST00000136976.7	1845	12	0	0	0	0	multi-exon	FALSE	canonical	3	1142	junction_11	112.190068946623	8314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTAATGTGTCTTTCTT	NA	False	NA	-1	True	ATTAAA	-28	NA	171074691	171062421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065942_171066083_171066162_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
ENSMUST00000136992.8	chr4	+	876	6	FSM	ENSMUSG00000086587.8	ENSMUST00000136992.8	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	12.687001221723	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATGGTACAGAATTTTT	0	True	NA	6	True	TATAAA	-17	NA	14930660	14953030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_14930771_14936440_14936540_14938483_14938558_14942199_14942276_14947438_14947546_14952620
ENSMUST00000137120.8	chr11	+	1167	5	FSM	ENSMUSG00000001105.16	ENSMUST00000137120.8	1167	5	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	109.732344821388	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGCAC	NA	False	NA	36	True	AATGAA	-43	NA	78427270	78432311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720
ENSMUST00000137167.8	chr5	+	1049	8	FSM	ENSMUSG00000041939.15	ENSMUST00000137167.8	1049	8	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_2	54.8813190773825	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGGCTGTCTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	114582329	114591211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_114582425_114582712_114582751_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940
ENSMUST00000137170.3	chr12	+	2270	6	FSM	ENSMUSG00000085793.4	ENSMUST00000137170.4	2270	6	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	15.7810012356631	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCCCAGGTTTTCCTTG	NA	False	NA	5	True	AATAAA	-16	NA	84498195	84578347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84498318_84503014_84503090_84504722_84504761_84506392_84506460_84509142_84509227_84576463
ENSMUST00000137201.8	chr17	+	1424	9	FSM	ENSMUSG00000002279.20	ENSMUST00000137201.8	1424	9	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	39.6917812651435	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTCTCTACCTATACTGT	NA	False	NA	4	True	AATAAA	-15	NA	25798160	25881697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25798354_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
ENSMUST00000137301.2	chr15	-	855	2	FSM	ENSMUSG00000053749.13	ENSMUST00000137301.2	855	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCTGCATTAAAGATGTT	NA	False	NA	NA	False	NA	NA	NA	54976856	54975258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_54975993_54976735
ENSMUST00000137304.8	chr11	-	1271	6	FSM	ENSMUSG00000020743.16	ENSMUST00000137304.8	1271	6	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_4	137.166468205608	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503753	115498743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500416_115502728_115502861_115503610
ENSMUST00000137318.2	chr6	-	424	2	FSM	ENSMUSG00000072772.4	ENSMUST00000137318.2	424	2	0	0	0	0	multi-exon	FALSE	canonical	3	807	junction_1	0	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACCTTTGTGTCAGTCAT	9602	False	NA	NA	False	AATAAA	-13	NA	124717678	124716149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124716377_124717481
ENSMUST00000137329.4	chr7	+	652	6	FSM	ENSMUSG00000012848.16	ENSMUST00000137329.4	652	6	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_1	6589.62965271949	5957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCAAGAAGAAAGATGAACT	NA	False	NA	-56	True	NA	NA	NA	12656363	12660519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_12656448_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
ENSMUST00000137340.2	chr2	-	715	3	FSM	ENSMUSG00000027620.17	ENSMUST00000137340.2	715	3	0	0	0	0	multi-exon	FALSE	canonical	3	533	junction_1	908	2774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCAAAAAAGAGGAAAAAAAA	NA	False	NA	-34	True	AATAGA	-6	NA	156022065	156020480	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_156020873_156021096_156021161_156021806
ENSMUST00000137343.9	chr4	+	1416	2	FSM	ENSMUSG00000086290.10	ENSMUST00000137343.9	1416	2	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	0	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTCTTTTTTATTTATT	NA	False	NA	25	True	AATAAA	-14	NA	132035987	132038333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132036219_132037148
ENSMUST00000137373.2	chr7	+	402	2	FSM	ENSMUSG00000087593.2	ENSMUST00000137373.2	402	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGAAGGAATGACGTGGAC	NA	False	NA	NA	False	AATAAA	-28	NA	19550477	19552550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_19550699_19552369
ENSMUST00000137376.8	chr2	+	1043	7	FSM	ENSMUSG00000062647.17	ENSMUST00000137376.8	1043	7	0	0	0	0	multi-exon	FALSE	canonical	3	2861	junction_1	784.717234989068	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26800832	26803330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_26800843_26801017_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26803070_26803176
ENSMUST00000137385.2	chr7	-	683	2	FSM	ENSMUSG00000048330.15	ENSMUST00000137385.2	683	2	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAACAAAAGA	NA	False	NA	NA	False	NA	NA	NA	108682529	108656693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_108657217_108682369
ENSMUST00000137398.8	chr5	-	906	5	FSM	ENSMUSG00000085271.8	ENSMUST00000137398.8	906	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	3.76662979332984	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGCAAAATACTGGAGC	NA	False	NA	NA	False	AATAAA	-31	NA	111909569	111882149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_111882676_111886992_111887080_111887701_111887776_111895707_111895859_111909501
ENSMUST00000137400.8	chr18	+	444	5	FSM	ENSMUSG00000024608.12	ENSMUST00000137400.8	444	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11701.1630698619	2732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACTCGAAGAAAAGGGGGT	NA	False	NA	-21	True	NA	NA	NA	60908787	60911529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_60908815_60909472_60909624_60910001_60910164_60910884_60910962_60911502
ENSMUST00000137423.2	chr4	-	353	2	FSM	ENSMUSG00000047675.16	ENSMUST00000137423.2	353	2	0	0	0	0	multi-exon	FALSE	canonical	3	13045	junction_1	0	3967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTAGGTGTTTGGAG	NA	False	NA	-20	True	AATAAA	-23	NA	117011694	117011030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_117011185_117011495
ENSMUST00000137512.8	chr4	+	1993	8	FSM	ENSMUSG00000028483.14	ENSMUST00000137512.8	1993	8	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_2	136.304730628972	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATCTGTTTAAAAGATT	NA	False	NA	NA	False	AATAAA	-13	NA	83335980	83372270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_83336292_83336942_83337021_83353427_83353533_83354560_83354711_83360123_83360207_83368307_83368473_83369441_83369550_83371277
ENSMUST00000137516.2	chr4	-	724	4	FSM	ENSMUSG00000025330.7	ENSMUST00000137516.2	724	4	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_3	3.39934634239519	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACGAGTAAGATAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	140485236	140479596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_140479997_140483683_140483792_140484812_140484925_140485132
ENSMUST00000137563.8	chr11	-	510	4	FSM	ENSMUSG00000034566.11	ENSMUST00000137563.8	510	4	0	0	0	0	multi-exon	FALSE	canonical	3	2984	junction_1	272.998575494859	2237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115308848	115306514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664
ENSMUST00000137608.8	chr1	+	1585	3	FSM	ENSMUSG00000026634.17	ENSMUST00000137608.8	1585	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	37.5	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAATTGAAGA	NA	False	NA	NA	False	NA	NA	NA	190660688	190670632	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_190660956_190665063_190665390_190669640
ENSMUST00000137648.8	chr17	-	2160	9	FSM	ENSMUSG00000024118.15	ENSMUST00000137648.8	2160	9	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_8	21.2485293608758	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGGCTTGACGGTTAA	3276	False	NA	0	True	AATAAA	-21	NA	24439825	24434212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439285_24439490_24439590_24439664
ENSMUST00000137685.2	chr4	+	500	4	FSM	ENSMUSG00000028647.14	ENSMUST00000137685.2	500	4	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_3	24.8596057893121	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCCACTCATCACACTT	NA	False	NA	5	True	TATAAA	-13	NA	123798928	123805035	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_123799100_123803426_123803476_123803629_123803760_123804885
ENSMUST00000137695.2	chr11	+	1387	5	FSM	ENSMUSG00000032615.15	ENSMUST00000137695.2	1387	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	25.8976350271603	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCTGTGGCCTTCTC	1750	False	NA	6	True	AATAAA	-16	NA	59738929	59767359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_59739311_59743616_59743718_59751575_59751637_59765378_59765494_59766630
ENSMUST00000137712.9	chrX	-	2410	22	FSM	ENSMUSG00000025665.17	ENSMUST00000137712.9	2410	22	0	0	0	0	multi-exon	FALSE	canonical	2	33	junction_21	75.5102672059551	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTTGTGCTCTTCAGTC	NA	False	NA	NA	False	AAAAAG	-22	NA	110372802	110299476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110372546
ENSMUST00000137745.2	chr16	+	515	3	FSM	ENSMUSG00000014232.15	ENSMUST00000137745.2	515	3	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	17.5	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGGCTCTTTCGGAGTC	3308	False	NA	NA	False	AATAAA	-14	NA	3726902	3731436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_3727018_3729314_3729427_3731148
ENSMUST00000137754.2	chr11	-	468	6	FSM	ENSMUSG00000034566.11	ENSMUST00000137754.2	468	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1306.80765225797	757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCCCAGAAACCAAGCTGG	NA	False	NA	NA	False	NA	NA	NA	115309567	115306643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115309524
ENSMUST00000137811.8	chr16	+	639	5	FSM	ENSMUSG00000098274.8	ENSMUST00000137811.8	639	5	0	0	0	0	multi-exon	FALSE	canonical	3	12575	junction_2	609.402371180159	50335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786783	55791798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
ENSMUST00000137829.8	chr11	+	677	4	FSM	ENSMUSG00000071866.13	ENSMUST00000137829.8	677	4	0	0	0	0	multi-exon	FALSE	canonical	3	36680	junction_3	786.740674484858	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGAGCGTCCCTACCCCAT	NA	False	NA	NA	False	NA	NA	NA	6365875	6369663	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_6365980_6368100_6368315_6369112_6369286_6369477
ENSMUST00000137840.2	chrX	-	998	3	FSM	ENSMUSG00000056679.14	ENSMUST00000137840.2	998	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	2	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCTGTGTTTATAGGATG	NA	False	NA	NA	False	NA	NA	NA	151151700	151150011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_151150266_151150416_151150507_151151046
ENSMUST00000137880.2	chr2	+	689	2	FSM	ENSMUSG00000055612.16	ENSMUST00000137880.2	689	2	0	0	0	0	multi-exon	FALSE	canonical	3	1220	junction_1	0	1608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCACAAAGGGCCGGAAAC	NA	False	NA	NA	False	TTTAAA	-13	NA	72315450	72316546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_72315657_72316063
ENSMUST00000137881.2	chr2	+	923	2	FSM	ENSMUSG00000037938.5	ENSMUST00000137881.2	923	2	0	0	0	0	multi-exon	FALSE	canonical	3	731	junction_1	0	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGGAGAAGAGCGATGAGA	3975	False	NA	40	True	AATAAA	-44	NA	128971769	128975400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_128972487_128975194
ENSMUST00000137911.2	chr4	+	365	3	FSM	ENSMUSG00000063172.14	ENSMUST00000137911.2	365	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	197	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGATTCCATTTTTTTT	NA	False	NA	2	True	ATTAAA	-13	NA	107119663	107137129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_107119777_107135123_107135168_107136921
ENSMUST00000137975.2	chr3	+	441	1	FSM	ENSMUSG00000042737.10	ENSMUST00000137975.2	441	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7750	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGTAGTTTTGAGTAT	6864	False	NA	19	True	ATTAAA	-20	NA	89173945	89174386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89173900_89174400
ENSMUST00000138005.2	chr7	+	1709	2	FSM	ENSMUSG00000047084.9	ENSMUST00000138005.2	1709	2	0	0	0	0	multi-exon	FALSE	canonical	3	448	junction_1	0	1921	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGTTGCTTGGTTCTCT	NA	False	NA	13	True	AATAAA	-13	NA	79910967	79915122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_79911680_79914125
ENSMUST00000138060.3	chr7	-	467	3	FSM	ENSMUSG00000035642.17	ENSMUST00000138060.3	467	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	14	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGCCTCCACTGTGTA	NA	False	NA	-1	True	AATAAA	-37	NA	97228689	97199748	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_97199949_97214357_97214508_97228572
ENSMUST00000138147.2	chr11	-	875	3	FSM	ENSMUSG00000020925.17	ENSMUST00000138147.2	875	3	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_2	39	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAAATCTCGTGCAAGAC	NA	False	NA	NA	False	NA	NA	NA	102588496	102580535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102581163_102582936_102583025_102588336
ENSMUST00000138149.2	chrX	+	2384	8	FSM	ENSMUSG00000073125.11	ENSMUST00000138149.2	2384	8	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_2	448.163508791429	698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTGGCATGAGTCATT	NA	False	NA	NA	False	AATAAA	-17	NA	72235816	72246535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_72235856_72237775_72237898_72238605_72238676_72239547_72239583_72240958_72241992_72243351_72243451_72245455_72245552_72245645
ENSMUST00000138189.2	chr2	-	765	5	FSM	ENSMUSG00000009549.15	ENSMUST00000138189.2	765	5	0	0	0	0	multi-exon	FALSE	canonical	2	110	junction_4	586.489130334058	10709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTATCCTACAGGTGGTT	NA	False	NA	-13	True	ATTAAA	-5	NA	118310129	118306341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_118306789_118307307_118307341_118309401_118309515_118309858_118309932_118310030
ENSMUST00000138226.8	chr9	+	835	7	FSM	ENSMUSG00000032249.15	ENSMUST00000138226.8	835	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	200.326954973336	3149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTTTTCTGATTGTA	NA	False	NA	NA	False	NA	NA	NA	62248574	62284983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_62248634_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
ENSMUST00000138231.2	chr2	-	1208	2	FSM	ENSMUSG00000027079.16	ENSMUST00000138231.2	1208	2	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	0	624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGGTATGATTCTTTTT	NA	False	NA	-23	True	AATAAA	-15	NA	84557620	84553467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84554562_84557506
ENSMUST00000138337.8	chr4	-	552	4	FSM	ENSMUSG00000073888.14	ENSMUST00000138337.8	552	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	40.1192666378083	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTCTCTTTTATTTCA	633	False	NA	5	True	AATAAA	-28	NA	41773537	41769466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_41769655_41769843_41769977_41771137_41771296_41773464
ENSMUST00000138454.2	chr8	+	637	2	FSM	ENSMUSG00000065952.14	ENSMUST00000138454.2	637	2	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGTGTGTGTATGTGC	NA	False	NA	NA	False	NA	NA	NA	3617989	3623650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_3618097_3623120
ENSMUST00000138457.2	chr11	-	995	2	FSM	ENSMUSG00000020775.14	ENSMUST00000138457.2	995	2	0	0	0	0	multi-exon	FALSE	canonical	3	763	junction_1	0	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCTGGTGCCCCATCTCC	410	False	NA	NA	False	NA	NA	NA	116029691	116028607	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116029448_116029536
ENSMUST00000138512.8	chr7	-	854	5	FSM	ENSMUSG00000030603.17	ENSMUST00000138512.8	854	5	0	0	0	0	multi-exon	FALSE	canonical	3	2113	junction_4	130.003846096952	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTTAATTTCTTCTTAG	NA	False	NA	-13	True	AATAAA	-15	NA	27746447	27741140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_27741346_27741525_27741582_27741763_27742152_27742233_27742402_27746410
ENSMUST00000138567.9	chr4	+	1350	5	FSM	ENSMUSG00000045751.17	ENSMUST00000138567.9	1350	5	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_3	29.9457843443781	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTCATTCTCGTTGAT	-5	True	NA	9	True	AATAAA	-18	NA	24496461	24503413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931
ENSMUST00000138666.8	chr2	+	534	7	FSM	ENSMUSG00000052533.15	ENSMUST00000138666.8	534	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	552.74607390937	424	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTGTTTCTTGTGTATA	4875	False	NA	NA	False	TTTAAA	-1	NA	30176435	30193822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_30176483_30186659_30186715_30188427_30188502_30190811_30190897_30191020_30191102_30192016_30192058_30193671
ENSMUST00000138728.2	chr17	-	785	4	FSM	ENSMUSG00000062753.15	ENSMUST00000138728.2	785	4	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_3	19.7371617907833	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGTTGCCCTCCTTGGGT	NA	False	NA	45	True	AATAAA	-14	NA	27784723	27782746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27782991_27783122_27783385_27783535_27783725_27784633
ENSMUST00000138739.8	chr4	+	1037	5	FSM	ENSMUSG00000028861.14	ENSMUST00000138739.8	1037	5	0	0	0	0	multi-exon	FALSE	canonical	3	1302	junction_3	49.8566695638608	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTACCTCCTGTCTTGGA	NA	False	NA	NA	False	NA	NA	NA	125940769	125945758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_125940993_125941226_125941272_125942427_125942507_125944272_125944322_125945117
ENSMUST00000138748.7	chr8	+	864	3	FSM	ENSMUSG00000005161.16	ENSMUST00000138748.7	864	3	0	0	0	0	multi-exon	FALSE	canonical	3	3785	junction_2	120	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGGGTGGGGTGGGTGG	NA	False	NA	NA	False	NA	NA	NA	85696322	85697754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85696392_85696868_85696974_85697064
ENSMUST00000138759.8	chr17	-	1074	8	FSM	ENSMUSG00000061046.10	ENSMUST00000138759.8	1074	8	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_7	17.2496672549984	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTGGTACCAGACACAC	4359	False	NA	-35	True	AATAAA	-14	NA	26004541	26001796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26004401
ENSMUST00000138800.8	chr2	+	771	3	FSM	ENSMUSG00000016344.15	ENSMUST00000138800.8	771	3	0	0	0	0	multi-exon	FALSE	canonical	3	861	junction_2	3.5	659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3625	False	NA	1	True	AATAAA	-17	NA	180829328	180830297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_180829680_180829796_180829894_180829974
ENSMUST00000138823.8	chr6	-	1905	16	FSM	ENSMUSG00000029782.21	ENSMUST00000138823.8	1905	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	247.567903143091	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGTGTGTCACGTGTTCC	4	True	NA	NA	False	ATTAAA	-37	NA	30509715	30481020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_30481137_30482855_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
ENSMUST00000138889.8	chr2	+	1192	4	FSM	ENSMUSG00000026857.10	ENSMUST00000138889.8	1192	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_2	216.499422632025	1891	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATGCCCCAGGCAGTCT	NA	False	NA	11	True	AATAAA	-17	NA	30697952	30713029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_30698096_30709640_30709781_30710460_30710714_30712373
ENSMUST00000138944.8	chrX	-	1275	3	FSM	ENSMUSG00000025283.16	ENSMUST00000138944.8	1275	3	0	0	0	0	multi-exon	FALSE	canonical	3	1003	junction_1	88	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTCTTGAACATCTTTTG	NA	False	NA	NA	False	TTTAAA	-30	NA	153997900	153996301	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_153996664_153996892_153996934_153997028
ENSMUST00000138998.2	chr11	+	760	5	FSM	ENSMUSG00000020739.12	ENSMUST00000138998.2	760	5	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_2	128.668177884044	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	4168	False	NA	12	True	AATAAA	-18	NA	115472466	115474732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
ENSMUST00000139082.3	chr7	+	2026	6	FSM	ENSMUSG00000030512.14	ENSMUST00000139082.3	2026	6	0	0	0	0	multi-exon	FALSE	canonical	3	2772	junction_5	101.577556576244	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGCCAGGACAGCCAAGG	NA	False	NA	NA	False	NA	NA	NA	65710311	65721360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65720414_65720979
ENSMUST00000139085.2	chr11	+	953	2	FSM	ENSMUSG00000070394.11	ENSMUST00000139085.2	953	2	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_1	0	2138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAACTTTGGTGTCTTTA	NA	False	NA	NA	False	ATTAAA	-15	NA	69729388	69730438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69730095_69730191
ENSMUST00000139091.2	chr10	+	600	3	FSM	ENSMUSG00000025408.16	ENSMUST00000139091.2	600	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	357	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGGTCAGCCTGCACCAA	NA	False	NA	NA	False	NA	NA	NA	127126661	127131934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127126761_127131189_127131348_127131591
ENSMUST00000139121.8	chr7	+	427	4	FSM	ENSMUSG00000042831.14	ENSMUST00000139121.8	427	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	198.031983948721	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGCTTGTG	NA	False	NA	NA	False	AATAAA	-39	NA	30008237	30010475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30010218
ENSMUST00000139132.2	chr6	+	1060	6	FSM	ENSMUSG00000029763.18	ENSMUST00000139132.2	1060	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	51.1640498787967	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTTTTAATCTTTTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	33226070	33296331	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_33226174_33242874_33243065_33254121_33254317_33273667_33273853_33282219_33282330_33296054
ENSMUST00000139167.3	chr5	-	1797	3	FSM	ENSMUSG00000029536.9	ENSMUST00000139167.3	1797	3	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	3.5	350	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGCTGATTTTTTAC	9709	False	NA	-1	True	NA	NA	NA	115479237	115471297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_115472654_115473525_115473630_115478900
ENSMUST00000139192.8	chr7	-	3286	7	FSM	ENSMUSG00000030929.18	ENSMUST00000139192.8	3286	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	33.8854278742681	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGACATGTAGAACATCAGA	NA	False	NA	-17	True	AATAAA	-19	NA	119393182	119383066	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_119385768_119385961_119386051_119386956_119387058_119389456_119389614_119390323_119390452_119391653_119391722_119393140
ENSMUST00000139277.8	chr16	-	710	7	FSM	ENSMUSG00000022956.12	ENSMUST00000139277.8	710	7	0	0	0	0	multi-exon	FALSE	canonical	1	32	junction_6	2358.49822745087	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCTCAGCAAGGCCATG	1224	False	NA	-100	True	NA	NA	NA	91728162	91722200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725898_91727241_91727293_91728023
ENSMUST00000139302.8	chr17	-	2428	17	FSM	ENSMUSG00000059208.16	ENSMUST00000139302.8	2428	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	711.141860737891	5424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	5771	False	NA	-5	True	AATAAA	-16	NA	33904362	33865209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_33865720_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33888142_33888151_33889054_33889108_33896247_33896415_33904240
ENSMUST00000139332.2	chr4	-	2558	4	FSM	ENSMUSG00000028540.7	ENSMUST00000139332.2	2558	4	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_1	7.78888096369861	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTTCTCTTTATTCAC	NA	False	NA	-7	True	AATAAA	-15	NA	117749217	117746103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_117746874_117746951_117748316_117748511_117748625_117748906
ENSMUST00000139340.8	chr1	+	837	5	FSM	ENSMUSG00000062510.13	ENSMUST00000139340.8	837	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	96.9442494426565	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGTTTCTGAGGTCAG	NA	False	NA	NA	False	NA	NA	NA	190795220	190809136	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190808813
ENSMUST00000139349.3	chr7	+	1248	5	FSM	ENSMUSG00000012848.16	ENSMUST00000139349.3	1248	5	0	0	0	0	multi-exon	FALSE	canonical	3	14799	junction_4	1606.02496478106	8220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTTCCTGTGTGCTTGTC	NA	False	NA	36	True	AATAAA	-22	NA	12656257	12660611	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12660422_12660498
ENSMUST00000139378.2	chr11	-	773	3	FSM	ENSMUSG00000016559.15	ENSMUST00000139378.2	773	3	0	0	0	0	multi-exon	FALSE	canonical	3	13934	junction_1	171	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTGAAGATACCAATCT	NA	False	NA	NA	False	NA	NA	NA	115915299	115914334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115914362_115914450_115914605_115914707
ENSMUST00000139398.8	chr5	-	1663	5	FSM	ENSMUSG00000029433.17	ENSMUST00000139398.8	1663	5	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_2	57.6649807075317	1402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGTTTTCAGAATTGTT	8956	False	NA	-12	True	AATAAA	-25	NA	123662205	123649767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_123650771_123655799_123656129_123658103_123658236_123661317_123661445_123662133
ENSMUST00000139430.2	chr11	-	608	3	FSM	ENSMUSG00000020457.14	ENSMUST00000139430.2	608	3	0	0	0	0	multi-exon	FALSE	canonical	3	1911	junction_1	72.5	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCAGGCTGGCTTTGAAC	487	False	NA	NA	False	NA	NA	NA	3202859	3200096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_3200366_3202159_3202283_3202643
ENSMUST00000139443.8	chr5	-	923	4	FSM	ENSMUSG00000066551.13	ENSMUST00000139443.8	923	4	0	0	0	0	multi-exon	FALSE	canonical	3	5649	junction_3	1332.80464518331	684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTTAAACTTTAAGCTTG	6793	False	NA	NA	False	AATAAA	-2	NA	148989821	148986210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_148986712_148987104_148987251_148987397_148987562_148989709
ENSMUST00000139490.8	chr2	-	307	3	FSM	ENSMUSG00000040591.19	ENSMUST00000139490.8	307	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	64	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATTTTCTTTTTTCTTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	91274982	91249128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_91249264_91252210_91252314_91274913
ENSMUST00000139493.8	chr11	-	941	4	FSM	ENSMUSG00000087060.8	ENSMUST00000139493.8	941	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	8.73053390247253	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATGAAGGTGTATCGTT	NA	False	NA	NA	False	ATTAAA	-16	NA	16901118	16885158	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_16885842_16886454_16886565_16900881_16900931_16901019
ENSMUST00000139562.8	chr1	+	881	4	FSM	ENSMUSG00000073633.10	ENSMUST00000139562.8	881	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	23.5843639350783	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTCTGGTTTGTAAT	4244	False	NA	NA	False	AATAAA	-15	NA	84844156	84878208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_84844265_84858812_84858922_84874210_84874384_84877717
ENSMUST00000139584.2	chr16	-	987	7	FSM	ENSMUSG00000022544.15	ENSMUST00000139584.2	987	7	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_1	22.2517165380311	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTTCTCTTTCTGTGG	NA	False	NA	-2	True	NA	NA	NA	5073820	5065238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
ENSMUST00000139613.2	chr7	+	285	2	FSM	ENSMUSG00000030672.13	ENSMUST00000139613.2	285	2	0	0	0	0	multi-exon	FALSE	canonical	3	1768	junction_1	0	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGGCAATTTCAGTGT	391	False	NA	31	True	AATAAA	-23	NA	126813067	126813459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126813156_126813262
ENSMUST00000139623.2	chr11	-	874	3	FSM	ENSMUSG00000016559.15	ENSMUST00000139623.2	874	3	0	0	0	0	multi-exon	FALSE	canonical	3	12160	junction_2	887	9338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGGATGGGTGATACTTC	NA	False	NA	NA	False	NA	NA	NA	115915340	115914018	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115914362_115914450_115914846_115915204
ENSMUST00000139627.3	chr1	+	839	2	FSM	ENSMUSG00000026201.13	ENSMUST00000139627.3	839	2	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTATGTGAGAGATGACC	NA	False	NA	NA	False	NA	NA	NA	75187489	75188515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_75187697_75187883
ENSMUST00000139685.8	chr4	-	2051	4	Antisense	novelGene_ENSMUSG00000028936.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	223294	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGGAGGGGGGCGCACTA	276	False	NA	NA	False	NA	NA	NA	152418528	152410323	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr4_-_152410353_152411937_152412043_152414460_152414586_152416736
ENSMUST00000139715.8	chr1	+	2518	21	FSM	ENSMUSG00000026229.18	ENSMUST00000139715.8	2518	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	342.245102229382	2211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAGAAAA	NA	False	NA	30	True	NA	NA	NA	85992340	86060471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_85992528_85998304_85998349_85999335_85999410_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435
ENSMUST00000139718.10	chr19	+	1012	5	FSM	ENSMUSG00000024845.20	ENSMUST00000139718.10	1012	5	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_3	207.505421615918	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAAGGACAGTTGCACTT	4370	False	NA	NA	False	AATAAA	-15	NA	4175958	4181725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4176200_4177055_4177121_4177548_4177836_4181227_4181282_4181360
ENSMUST00000139721.8	chr8	+	1993	9	FSM	ENSMUSG00000008167.15	ENSMUST00000139721.8	1993	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	8.18535277187245	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTGAGCTTTCTGTGAC	NA	False	NA	25	True	AATAAA	-25	NA	85786684	85793753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012_85791302_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
ENSMUST00000139782.8	chr8	-	1366	10	FSM	ENSMUSG00000031816.16	ENSMUST00000139782.8	1366	10	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_9	24.8282992660481	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGCTTGTATGTTTGTG	NA	False	NA	-11	True	NA	NA	NA	121835049	121824295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_121824665_121825446_121825511_121825737_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121834932
ENSMUST00000139784.8	chr4	+	628	4	FSM	ENSMUSG00000065999.14	ENSMUST00000139784.8	628	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	19.7540431867054	578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAACACAAGCGAAA	NA	False	NA	NA	False	NA	NA	NA	147637733	147667583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_147637884_147661528_147661587_147665698_147665826_147667290
ENSMUST00000139829.2	chr11	-	796	4	FSM	ENSMUSG00000078640.10	ENSMUST00000139829.2	796	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	2.16024689946929	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTAAACTATTTTCATAT	4	True	NA	NA	False	NA	NA	NA	102470101	102467269	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102467624_102467724_102467906_102469575_102469722_102469986
ENSMUST00000139846.2	chr11	+	447	3	FSM	ENSMUSG00000035530.14	ENSMUST00000139846.2	447	3	0	0	0	0	multi-exon	FALSE	canonical	3	12221	junction_1	273.5	2487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGTTTTAAGTGCTTGT	4590	False	NA	NA	False	NA	NA	NA	100211343	100212175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_100211656_100211773_100211876_100212142
ENSMUST00000139934.8	chr11	+	865	6	FSM	ENSMUSG00000020812.19	ENSMUST00000139934.8	865	6	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_5	27.7632851082144	2364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTAGCATTGTGGGTAT	NA	False	NA	3	True	AATAAA	-16	NA	116562485	116566624	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566333
ENSMUST00000139959.8	chr11	+	1542	7	FSM	ENSMUSG00000020372.16	ENSMUST00000139959.8	1542	7	0	0	0	0	multi-exon	FALSE	canonical	3	5433	junction_6	484.72730019626	43411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	23	True	AATAAA	-15	NA	48691183	48696915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_48691400_48692489_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
ENSMUST00000140028.8	chr5	-	287	2	FSM	ENSMUSG00000072591.11	ENSMUST00000140028.8	287	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGTCTGTCCTTCCAGAT	NA	False	NA	NA	False	AATAAA	-36	NA	128662442	128656169	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_128656350_128662335
ENSMUST00000140053.3	chr7	-	1244	11	FSM	ENSMUSG00000030603.17	ENSMUST00000140053.3	1244	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	702.157133411034	1456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCAGGATTGGTTTAGT	NA	False	NA	-54	True	NA	NA	NA	27749473	27741181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748312_27748528_27748628_27749407
ENSMUST00000140089.7	chr4	+	578	4	FSM	ENSMUSG00000056300.15	ENSMUST00000140089.7	578	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	159.826989794173	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGTTTAAAGGGGTCTT	NA	False	NA	NA	False	TATAAA	-9	NA	146599376	146621477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_146599500_146616526_146616611_146619877_146620005_146621233
ENSMUST00000140114.3	chr14	+	419	2	FSM	ENSMUSG00000055128.16	ENSMUST00000140114.3	419	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGTAGACGTGAAGATGA	631	False	NA	NA	False	ATTAAA	-23	NA	47069675	47077871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_47069837_47077613
ENSMUST00000140131.8	chr6	+	1446	8	FSM	ENSMUSG00000030330.16	ENSMUST00000140131.8	1446	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	35.3345526679608	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTTTATTGTAG	7031	False	NA	8	True	AATAAA	-15	NA	125016722	125025965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024441_125024551_125024755_125024904_125025138_125025201_125025330
ENSMUST00000140155.2	chr5	-	441	1	FSM	ENSMUSG00000060419.9	ENSMUST00000140155.2	441	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8428	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCATCTCAAGGATCGGGG	NA	False	NA	NA	False	NA	NA	NA	129205581	129205140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_129205100_129205600
ENSMUST00000140185.2	chr2	-	721	2	FSM	ENSMUSG00000086328.2	ENSMUST00000140185.2	721	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATCTGAGTCTGTAC	NA	False	NA	NA	False	AATAAA	-20	NA	115897925	115896698	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_115897100_115897605
ENSMUST00000140236.2	chr8	+	895	5	FSM	ENSMUSG00000002395.15	ENSMUST00000140236.2	895	5	0	0	0	0	multi-exon	FALSE	canonical	3	802	junction_3	40.4042077016738	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71820423	71822376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71820493_71820602_71820756_71821193_71821207_71821493_71821948_71822170
ENSMUST00000140254.8	chr10	+	2038	7	FSM	ENSMUSG00000006728.13	ENSMUST00000140254.8	2038	7	0	0	0	0	multi-exon	FALSE	canonical	3	4641	junction_3	424.742274797318	3433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTTAATGTTTTTTC	NA	False	NA	29	True	AAAACA	-27	NA	126899482	126903166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901873_126901969_126902106_126902797
ENSMUST00000140265.8	chr9	+	791	6	FSM	ENSMUSG00000033543.18	ENSMUST00000140265.8	791	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	407.297728940391	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919924	69930020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69924354_69924474_69926670_69926798_69929718
ENSMUST00000140267.10	chr19	+	938	7	FSM	ENSMUSG00000024845.20	ENSMUST00000140267.10	938	7	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_2	70.8411760364142	2460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	4370	False	NA	NA	False	AATAAA	-16	NA	4175958	4181726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
ENSMUST00000140281.2	chr6	-	455	4	FSM	ENSMUSG00000030042.16	ENSMUST00000140281.2	455	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	461.738983505713	2157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAATTCAAGCCTGGATGT	NA	False	NA	NA	False	NA	NA	NA	82629499	82624823	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_82625018_82628417_82628460_82629063_82629149_82629365
ENSMUST00000140291.2	chr4	-	722	4	FSM	ENSMUSG00000057236.11	ENSMUST00000140291.2	722	4	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	460.816666365269	4984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	3218	False	NA	-29	True	AATAAA	-14	NA	129228437	129203309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_129203670_129216594_129216663_129222380_129222527_129228289
ENSMUST00000140375.8	chr9	+	1921	7	FSM	ENSMUSG00000032309.16	ENSMUST00000140375.8	1921	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	472.947759623971	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACTCAACTGGTGTTGTA	NA	False	NA	2	True	AATAAA	-9	NA	55116271	55131708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125717_55125764_55128305_55128472_55130523
ENSMUST00000140405.10	chr19	+	874	6	FSM	ENSMUSG00000024845.20	ENSMUST00000140405.10	874	6	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_2	248.896283620306	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	4400	False	NA	NA	False	AATAAA	-16	NA	4175988	4181726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4176200_4177055_4177132_4177548_4177639_4177758_4177836_4181227_4181282_4181360
ENSMUST00000140406.8	chr2	-	919	6	FSM	ENSMUSG00000044627.12	ENSMUST00000140406.8	919	6	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	1714.39027062102	2061	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32177947	32168827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_32169144_32170238_32170523_32170720_32170816_32171697_32171823_32177608_32177658_32177897
ENSMUST00000140411.8	chr7	+	599	6	FSM	ENSMUSG00000025487.16	ENSMUST00000140411.8	599	6	0	0	0	0	multi-exon	FALSE	canonical	3	1147	junction_5	133.449016481951	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTTGCTTGGTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	140462341	140467178	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931
ENSMUST00000140434.8	chr11	-	476	3	FSM	ENSMUSG00000020415.17	ENSMUST00000140434.8	476	3	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_1	5041.5	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATTGTGAATACTTAACCA	NA	False	NA	-27	True	AATAAA	-19	NA	43313813	43311091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_43311236_43311854_43312093_43313719
ENSMUST00000140521.8	chr8	+	1551	12	FSM	ENSMUSG00000005481.19	ENSMUST00000140521.8	1551	12	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	911.296107223839	649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATGGCTCCAGCCCCA	NA	False	NA	26	True	AATAAA	-12	NA	84441896	84449904	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
ENSMUST00000140570.8	chr2	+	3543	13	FSM	ENSMUSG00000033411.17	ENSMUST00000140570.8	3543	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	109.645134664314	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGCTCTTTCTCAAAAT	NA	False	NA	11	True	AATAAA	-21	NA	121786960	121843096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_121787099_121799550_121799761_121807815_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043
ENSMUST00000140575.8	chrX	+	788	4	FSM	ENSMUSG00000086316.9	ENSMUST00000140575.8	788	4	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	8.37987005998436	1914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAATGTCCAAATAAATTT	NA	False	NA	9	True	ATTAAA	-14	NA	152506585	152524260	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_152506934_152508700_152508838_152511857_152511936_152524035
ENSMUST00000140593.9	chr7	-	2998	12	FSM	ENSMUSG00000030986.14	ENSMUST00000140593.9	2998	12	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_11	95.5958261822716	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATCTCTTCAATGGGTTT	NA	False	NA	-13	True	AATAAA	-15	NA	133361998	133322674	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128_133361643_133361749
ENSMUST00000140621.2	chr8	+	630	4	FSM	ENSMUSG00000059355.14	ENSMUST00000140621.2	630	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	280.064675070281	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCACTGTTGCTTCTCT	NA	False	NA	29	True	TATAAA	-18	NA	85807616	85808961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85807693_85807801_85807908_85808405_85808504_85808611
ENSMUST00000140679.8	chr8	-	697	4	FSM	ENSMUSG00000090137.9	ENSMUST00000140679.8	697	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10633.6606532694	22683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTAGAGTGACTGT	NA	False	NA	-4	True	AATAAA	-28	NA	70963000	70960912	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70961179_70961945_70962033_70962170_70962282_70962767
ENSMUST00000140687.2	chr7	-	625	1	FSM	ENSMUSG00000087412.5	ENSMUST00000140687.2	625	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35106	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCTCATGTGTAGTGTAA	NA	False	NA	-60	True	NA	NA	NA	92828852	92828227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_92828200_92828900
ENSMUST00000140763.2	chr2	-	309	1	FSM	ENSMUSG00000087181.4	ENSMUST00000140763.2	309	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	308	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATGGTGGTGGAGCCAA	NA	False	NA	NA	False	NA	NA	NA	59929058	59928749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_59928700_59929100
ENSMUST00000140804.2	chrX	+	878	2	FSM	ENSMUSG00000025260.11	ENSMUST00000140804.2	878	2	0	0	0	0	multi-exon	FALSE	canonical	3	1649	junction_1	0	463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGCAGTCTTGTGTG	NA	False	NA	16	True	AATAAA	-16	NA	150786392	150787438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_150786967_150787134
ENSMUST00000140805.2	chr7	-	516	2	FSM	ENSMUSG00000035642.17	ENSMUST00000140805.2	516	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCCAAAGAGAAAGTTGAGA	NA	False	NA	NA	False	AATAAA	-15	NA	97228693	97199553	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_97199949_97228572
ENSMUST00000140879.2	chr5	-	2651	2	FSM	ENSMUSG00000047215.15	ENSMUST00000140879.2	2651	2	0	0	0	0	multi-exon	FALSE	canonical	3	5084	junction_1	0	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTGTGTCCTTGTCTTT	NA	False	NA	-7	True	AATAAA	-15	NA	65548741	65545707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_65548336_65548718
ENSMUST00000140886.3	chr11	-	478	3	FSM	ENSMUSG00000017288.16	ENSMUST00000140886.3	478	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	39.5	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAAACCAGATGAGTGGT	NA	False	NA	NA	False	AATAAA	-26	NA	76070438	76061339	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_76061537_76065452_76065534_76070238
ENSMUST00000140931.2	chr5	-	2369	4	FSM	ENSMUSG00000019295.9	ENSMUST00000140931.2	2369	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	31.3793987620328	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTACTTCATTTTGTTT	NA	False	NA	-2	True	AATAAA	-16	NA	33815243	33810562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_33811959_33812056_33812217_33812666_33813142_33814905
ENSMUST00000140950.8	chr2	+	648	5	FSM	ENSMUSG00000027454.11	ENSMUST00000140950.8	648	5	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_1	29.583568074186	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCGAGAGGAAGACAGTTT	2445	False	NA	NA	False	NA	NA	NA	150751536	150768017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767801
ENSMUST00000141125.8	chr1	-	2085	9	FSM	ENSMUSG00000026047.14	ENSMUST00000141125.8	2085	9	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_5	36.3145976158349	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTGTTTTGTTACAGTT	NA	False	NA	-5	True	AATAAA	-17	NA	44157913	44146044	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
ENSMUST00000141138.8	chr6	-	890	4	FSM	ENSMUSG00000030042.16	ENSMUST00000141138.8	890	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	458.476462500167	1741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATGTGATATAAAATTT	NA	False	NA	-36	True	NA	NA	NA	82629501	82624296	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_82625018_82628417_82628460_82629063_82629149_82629459
ENSMUST00000141169.2	chr11	+	799	5	FSM	ENSMUSG00000020485.15	ENSMUST00000141169.2	799	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	233.365057367207	1406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTACTGAGGCCTGTGCCT	NA	False	NA	8	True	AATAAA	-25	NA	87628378	87634449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_87628495_87628992_87629100_87633533_87633678_87633883_87633938_87634071
ENSMUST00000141217.2	chr1	-	1597	5	FSM	ENSMUSG00000043716.14	ENSMUST00000141217.2	1597	5	0	0	0	0	multi-exon	FALSE	canonical	3	5452	junction_4	739.819403638483	969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAATGTGTCGGA	NA	False	NA	-16	True	AATAAA	-14	NA	16174626	16171529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_16172161_16172713_16172824_16172915_16173559_16173733_16173909_16174588
ENSMUST00000141251.2	chr6	-	1074	3	FSM	ENSMUSG00000004268.12	ENSMUST00000141251.2	1074	3	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_2	29.5	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATGGCAAGGTACAGTC	NA	False	NA	NA	False	NA	NA	NA	124689104	124681913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124682620_124682703_124682806_124688838
ENSMUST00000141262.2	chr2	-	463	4	FSM	ENSMUSG00000040591.19	ENSMUST00000141262.2	463	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.29983164553722	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTTTTTTGTTGTGTTAG	NA	False	NA	NA	False	ATTAAA	-19	NA	91275049	91249177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_91249264_91252210_91252314_91254906_91255045_91274913
ENSMUST00000141268.8	chr15	-	713	7	FSM	ENSMUSG00000055762.17	ENSMUST00000141268.8	713	7	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_3	1405.29918720376	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGGCCAAATCCTCCATC	NA	False	NA	NA	False	NA	NA	NA	75781168	75768129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75768314_75768488_75768590_75768668_75768769_75769074_75769132_75772539_75772612_75772980_75773105_75781093
ENSMUST00000141274.2	chr6	-	453	5	FSM	ENSMUSG00000023089.13	ENSMUST00000141274.2	453	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	1535.46725380257	8071	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTGTCCATGTTATT	504	False	NA	-32	True	ATTAAA	-26	NA	24527525	24518665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_24518824_24519190_24519257_24522657_24522775_24527271_24527317_24527458
ENSMUST00000141320.2	chr10	-	390	3	FSM	ENSMUSG00000090247.8	ENSMUST00000141320.2	390	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	279.5	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGGAATACGTCTACAAAG	NA	False	NA	NA	False	NA	NA	NA	128758895	128755911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128755977_128756427_128756518_128758660
ENSMUST00000141334.2	chr8	-	743	3	FSM	ENSMUSG00000050914.17	ENSMUST00000141334.2	743	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	21	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTAAATACAGTGAATTTGA	NA	False	NA	NA	False	NA	NA	NA	46452886	46451168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_46451526_46452287_46452441_46452653
ENSMUST00000141374.2	chr8	+	777	4	FSM	ENSMUSG00000031901.13	ENSMUST00000141374.2	777	4	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_1	8.05536398239638	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	106738153	106757515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983
ENSMUST00000141377.8	chr3	-	808	4	FSM	ENSMUSG00000028099.9	ENSMUST00000141377.8	808	4	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_1	11.8415464455544	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTGTGTGCCAGTCAT	NA	False	NA	-1	True	AATGAA	-22	NA	96634770	96630735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_96631016_96631112_96631369_96633149_96633316_96634664
ENSMUST00000141395.2	chr5	+	409	2	FSM	ENSMUSG00000029465.15	ENSMUST00000141395.2	409	2	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATCCTAGCACTTAGGAG	4576	False	NA	NA	False	NA	NA	NA	122530028	122535256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_122530061_122534879
ENSMUST00000141440.2	chr6	+	269	2	FSM	ENSMUSG00000086643.2	ENSMUST00000141440.2	269	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGATGGGATTCCTGT	NA	False	NA	NA	False	NA	NA	NA	145002114	145005618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_145002150_145005384
ENSMUST00000141470.2	chr2	-	1006	2	FSM	ENSMUSG00000026966.7	ENSMUST00000141470.2	1006	2	0	0	0	0	multi-exon	FALSE	canonical	3	843	junction_1	0	2501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATCCCCATGGCCTCTGG	NA	False	NA	-53	True	AAGAAA	-32	NA	25162450	25161097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25161594_25161940
ENSMUST00000141531.8	chr11	-	1503	4	FSM	ENSMUSG00000020773.12	ENSMUST00000141531.8	1503	4	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_3	17.6131264181639	643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	115998945	115996577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115997468_115997757_115997830_115998249_115998449_115998603
ENSMUST00000141542.8	chr10	-	2365	7	FSM	ENSMUSG00000019822.13	ENSMUST00000141542.8	2365	7	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_3	12.5521135891752	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTAGTGGCTCTACCTTG	NA	False	NA	-6	True	AATAAA	-14	NA	41366326	41363173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41364306_41364428_41364512_41364729_41365348_41365459
ENSMUST00000141608.2	chr7	-	502	3	FSM	ENSMUSG00000006095.13	ENSMUST00000141608.2	502	3	0	0	0	0	multi-exon	FALSE	canonical	3	871	junction_1	18	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTTGTGCAAGTCTCTT	NA	False	NA	-11	True	NA	NA	NA	29926486	29923561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_29923773_29923897_29923971_29926268
ENSMUST00000141610.2	chr19	+	469	5	FSM	ENSMUSG00000024829.13	ENSMUST00000141610.2	469	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	814.999846625752	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCCACTCCTCCGGTAA	7375	False	NA	NA	False	NA	NA	NA	3333063	3337739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_3333172_3334759_3334834_3335309_3335396_3336874_3337039_3337702
ENSMUST00000141664.9	chr16	-	762	6	FSM	ENSMUSG00000058240.15	ENSMUST00000141664.9	762	6	0	0	0	0	multi-exon	FALSE	canonical	3	1466	junction_2	55.2268050859363	1051	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTATTTGGTTTTTGTT	9203	False	NA	NA	False	TTTAAA	-2	NA	91525488	91503730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
ENSMUST00000141679.3	chr6	+	1003	2	FSM	ENSMUSG00000045709.12	ENSMUST00000141679.3	1003	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGCTTAGCAGTCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	29985233	29993777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_29985466_29993006
ENSMUST00000141683.2	chr10	-	605	3	FSM	ENSMUSG00000020163.13	ENSMUST00000141683.2	605	3	0	0	0	0	multi-exon	FALSE	canonical	2	31	junction_2	2065	6659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCTGGCTCCTTCCTCAT	NA	False	NA	-2	True	ATTAAA	-20	NA	80242629	80238831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80238990_80239969_80240121_80242333
ENSMUST00000141880.2	chr11	-	465	2	FSM	ENSMUSG00000093989.2	ENSMUST00000141880.2	465	2	0	0	0	0	multi-exon	FALSE	canonical	3	726	junction_1	0	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGCTTGCTGTCTGTGCTT	NA	False	NA	-4	True	AATAAA	-17	NA	70129884	70128952	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70129297_70129763
ENSMUST00000141881.2	chr11	-	822	2	FSM	ENSMUSG00000057113.14	ENSMUST00000141881.2	822	2	0	0	0	0	multi-exon	FALSE	canonical	3	19753	junction_1	0	2643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTGTTTCTATTTGCTT	NA	False	NA	-33	True	AATAAA	-20	NA	33104465	33102510	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_33102853_33103985
ENSMUST00000141907.2	chr11	-	498	3	FSM	ENSMUSG00000020471.12	ENSMUST00000141907.2	498	3	0	0	0	0	multi-exon	FALSE	canonical	3	2338	junction_1	292.5	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGAACCTTGTTCACTT	NA	False	NA	-6	True	AATAAA	-17	NA	5823191	5822187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_5822419_5822669_5822772_5823026
ENSMUST00000141957.8	chr8	+	2460	15	FSM	ENSMUSG00000031889.10	ENSMUST00000141957.8	2460	15	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	68.2304019854935	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACAGCCTCATCTTGTA	NA	False	NA	NA	False	NA	NA	NA	105951837	105979388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350_105977424_105978229
ENSMUST00000142010.2	chr18	+	956	6	FSM	ENSMUSG00000014504.17	ENSMUST00000142010.2	956	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	757.224141189384	6121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTGTTCATCTTTAAG	NA	False	NA	-42	True	AATAAA	-12	NA	34464228	34469606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_34464313_34464802_34464879_34465958_34466116_34467345_34467418_34467509_34467622_34469151
ENSMUST00000142020.8	chr4	+	2973	13	FSM	ENSMUSG00000006215.13	ENSMUST00000142020.8	2973	13	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	20.1582282620935	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCCTGTGGTCCCTGTG	NA	False	NA	5	True	AATAAA	-15	NA	141172009	141194536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141192014_141192099_141192401_141192659_141192748_141192834_141193419_141193658_141193869_141193984_141194075_141194153
ENSMUST00000142029.2	chr4	+	1022	2	FSM	ENSMUSG00000042380.9	ENSMUST00000142029.2	1022	2	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_1	0	4493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGGAGTCCTGCTCTCT	NA	False	NA	29	True	ATTAAA	-18	NA	127137576	127141602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_127137692_127140695
ENSMUST00000142045.8	chr4	+	1843	20	FSM	ENSMUSG00000028292.15	ENSMUST00000142045.8	1843	20	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_4	142.027152021567	1844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGTGTGTAGTAGTGTG	5	True	NA	8	True	AATAGA	-23	NA	34614973	34660163	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630476_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
ENSMUST00000142087.2	chr2	-	795	5	FSM	ENSMUSG00000026939.13	ENSMUST00000142087.2	795	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	9.85837207656518	513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGTTCTGTGGGTGAAGC	NA	False	NA	31	True	ATTAAA	-14	NA	25512017	25510078	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25510543_25511077_25511186_25511386_25511471_25511619_25511687_25511945
ENSMUST00000142105.8	chr7	-	536	6	FSM	ENSMUSG00000025466.20	ENSMUST00000142105.8	536	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	173.251262621662	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1536	False	NA	0	True	NA	NA	NA	139682289	139679382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_139679536_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
ENSMUST00000142127.8	chr2	-	851	6	FSM	ENSMUSG00000051730.16	ENSMUST00000142127.8	851	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	209.013492387453	1348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTACTTGTCTCTAGCAC	6824	False	NA	-21	True	AATAAA	-18	NA	69715941	69701557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_69701661_69702075_69702126_69704227_69704280_69711110_69711293_69711640_69711756_69715592
ENSMUST00000142141.3	chr17	+	451	2	FSM	ENSMUSG00000048731.16	ENSMUST00000142141.3	451	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	841	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCGTAGCGCCGGTTAATA	NA	False	NA	22	True	AGTAAA	-14	NA	27236960	27241491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_27237145_27241224
ENSMUST00000142187.8	chr6	-	917	5	FSM	ENSMUSG00000004268.12	ENSMUST00000142187.8	917	5	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_4	110.261904119238	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGACTGCAGAGTGGGG	NA	False	NA	-91	True	NA	NA	NA	124689032	124681420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124681622_124681901_124682180_124682477_124682620_124682703_124682806_124688838
ENSMUST00000142227.3	chr4	+	1660	11	FSM	ENSMUSG00000028312.20	ENSMUST00000142227.3	1660	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	133.599738023695	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTCTTAAATGTCCTTA	7	True	NA	21	True	AAGAAA	-37	NA	52439268	52458574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_52439460_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261_52457496_52458414
ENSMUST00000142241.2	chr19	-	2152	2	FSM	ENSMUSG00000024742.16	ENSMUST00000142241.2	2152	2	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACCAGAATGTGTCTGAA	2204	False	NA	NA	False	AATAAA	-10	NA	10181258	10176505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10178462_10181062
ENSMUST00000142281.8	chr4	+	1837	8	FSM	ENSMUSG00000054405.15	ENSMUST00000142281.8	1837	8	0	0	0	0	multi-exon	FALSE	canonical	3	2684	junction_7	240.501516818162	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCCGTTGTGTCCTTGCT	2348	False	NA	1	True	NA	NA	NA	132262877	132280972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
ENSMUST00000142320.8	chr2	-	755	6	FSM	ENSMUSG00000055897.14	ENSMUST00000142320.8	755	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	7.55248303539968	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAAATTGTCTCTTTCT	NA	False	NA	NA	False	ATTAAA	-9	NA	173501332	173437898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_173438193_173438832_173438981_173450525_173450673_173457275_173457370_173501115_173501161_173501305
ENSMUST00000142341.2	chrX	-	714	5	FSM	ENSMUSG00000001134.10	ENSMUST00000142341.2	714	5	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_3	51.773545368267	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTACCCTTTTCCCTGT	NA	False	NA	NA	False	AATAAA	-20	NA	20828225	20825300	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
ENSMUST00000142399.2	chr11	+	383	3	FSM	ENSMUSG00000038534.20	ENSMUST00000142399.2	383	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCATAGGCTCCACACCTG	NA	False	NA	NA	False	NA	NA	NA	96943151	96943801	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_96943203_96943311_96943438_96943595
ENSMUST00000142422.8	chr8	+	1097	7	FSM	ENSMUSG00000060038.15	ENSMUST00000142422.8	1097	7	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_1	32.4704994315353	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGAGTCAGTCTGCATC	NA	False	NA	12	True	AATAAA	-18	NA	85799686	85801780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
ENSMUST00000142424.2	chr9	+	1394	10	FSM	ENSMUSG00000032563.17	ENSMUST00000142424.2	1394	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	174.559127200181	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGTTGTGAAACAGAACC	NA	False	NA	20	True	ATTAAA	-17	NA	104930499	104954665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_104930712_104931713_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360_104952439_104954191
ENSMUST00000142428.2	chr5	-	644	5	FSM	ENSMUSG00000032959.13	ENSMUST00000142428.2	644	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1144.45257110114	313	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAACCTGGGAGCCCCGG	NA	False	NA	NA	False	NA	NA	NA	117425633	117421406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_117421531_117422590_117422740_117423785_117423887_117424199_117424310_117425473
ENSMUST00000142468.2	chr4	-	423	2	FSM	ENSMUSG00000063882.13	ENSMUST00000142468.2	423	2	0	0	0	0	multi-exon	FALSE	canonical	3	1072	junction_1	0	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTTGTCCTTCCTTTGC	NA	False	NA	-8	True	AATAAA	-16	NA	115927275	115924162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_115924370_115927059
ENSMUST00000142495.8	chr11	-	1437	5	FSM	ENSMUSG00000056962.12	ENSMUST00000142495.8	1437	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	131.104919816153	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGGACAGCTTTCTT	NA	False	NA	-8	True	AATAAA	-15	NA	116734181	116728258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116728590_116729815_116729955_116731894_116732182_116733157_116733547_116733890
ENSMUST00000142504.2	chr4	-	1039	2	FSM	ENSMUSG00000050890.16	ENSMUST00000142504.2	1039	2	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	0	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAACCCAACAA	4319	False	NA	NA	False	ATTAAA	-11	NA	134014536	134010884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_134011859_134014471
ENSMUST00000142519.3	chr7	+	1153	8	FSM	ENSMUSG00000030588.13	ENSMUST00000142519.3	1153	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	530.605237787328	1147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGGCCTTCTTCTCCTT	6235	False	NA	28	True	NA	NA	NA	28937951	28947022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28938019_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
ENSMUST00000142550.8	chr11	-	1403	8	FSM	ENSMUSG00000020775.14	ENSMUST00000142550.8	1403	8	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_5	29.2665442484229	2868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAATATGTCTTCACTTT	500	False	NA	-6	True	AATAAA	-16	NA	116029601	116022646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267
ENSMUST00000142643.2	chr15	-	505	3	FSM	ENSMUSG00000058600.14	ENSMUST00000142643.2	505	3	0	0	0	0	multi-exon	FALSE	canonical	3	4307	junction_1	417	1901	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	675	False	NA	-20	True	AATAAA	-27	NA	34443054	34440650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_34440751_34441377_34441509_34442780
ENSMUST00000142669.8	chr2	-	2424	10	FSM	ENSMUSG00000039660.17	ENSMUST00000142669.8	2424	10	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	42.1051007144365	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCACCTATGCTCACGT	NA	False	NA	-10	True	AATAAA	-33	NA	30068441	30063464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604
ENSMUST00000142690.2	chr18	-	1256	5	FSM	ENSMUSG00000063889.17	ENSMUST00000142690.2	1256	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	27.3072792493137	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTAGTCTTGTGCATTT	-5	True	NA	-6	True	AATAAA	-12	NA	3337574	3294481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3337379
ENSMUST00000142704.8	chr1	+	2976	15	FSM	ENSMUSG00000032883.16	ENSMUST00000142704.8	2976	15	0	0	0	0	multi-exon	TRUE	canonical	3	358	junction_1	36.8929090028677	687	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTTTTAAGAAATTTCGAA	NA	False	NA	3	True	AATAAA	-14	NA	78635599	78684684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_78635821_78659309_78659728_78665953_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
ENSMUST00000142712.2	chr19	+	414	2	FSM	ENSMUSG00000044387.6	ENSMUST00000142712.2	414	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	599	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAGAAACATCGCTAG	NA	False	NA	NA	False	NA	NA	NA	23112263	23113081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_23112319_23112722
ENSMUST00000142735.8	chr4	+	581	4	FSM	ENSMUSG00000028936.16	ENSMUST00000142735.8	581	4	0	0	0	0	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	223614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCGGTGGTTTATCCTT	NA	False	NA	12	True	AATAAA	-11	NA	152410198	152416933	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
ENSMUST00000142736.9	chr9	-	1761	8	FSM	ENSMUSG00000011114.19	ENSMUST00000142736.9	1761	8	0	0	0	0	multi-exon	FALSE	canonical	3	1493	junction_5	98.6130346974724	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTATTTGTTTCTTCTTGT	NA	False	NA	-20	True	AATAAA	-18	NA	37568533	37560477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37564466_37565511_37565733_37566317_37566389_37568293
ENSMUST00000142768.8	chr2	-	862	4	FSM	ENSMUSG00000018770.10	ENSMUST00000142768.8	862	4	0	0	0	0	multi-exon	FALSE	canonical	3	2058	junction_3	1115.93219626762	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGTGTTGTGTCTCTTT	NA	False	NA	-121	True	NA	NA	NA	73741626	73739074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_73739722_73740207_73740286_73741298_73741405_73741595
ENSMUST00000142779.8	chr5	-	2008	8	FSM	ENSMUSG00000023452.20	ENSMUST00000142779.8	2008	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	261.322148518112	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTAGCTTTGTATTTTGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	32942929	32893644	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_32894799_32895329_32895377_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
ENSMUST00000142788.8	chr11	-	899	7	FSM	ENSMUSG00000018565.18	ENSMUST00000142788.8	899	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	199.487468278085	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGTAATGCTTAAACAAG	9880	False	NA	2	True	AATAAA	-32	NA	69871098	69859047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69870655_69870737_69870824_69870886_69871039
ENSMUST00000142796.8	chr10	-	1135	3	FSM	ENSMUSG00000020083.14	ENSMUST00000142796.8	1135	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	41.5	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCGGTGAATGACTGAC	NA	False	NA	-10	True	AATAAA	-21	NA	61946829	61943988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_61944903_61945662_61945792_61946737
ENSMUST00000142819.8	chr10	+	1495	8	FSM	ENSMUSG00000020109.14	ENSMUST00000142819.8	1495	8	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_6	22.8937207325413	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAAGCCTGGCTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	59715439	59732597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171
ENSMUST00000142822.4	chr8	-	975	4	FSM	ENSMUSG00000079042.11	ENSMUST00000142822.4	975	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_3	201.802433638007	2520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGAGTTTATTGTGTGT	NA	False	NA	-21	True	ATTAAA	-21	NA	65489988	65481068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_65481644_65488316_65488407_65489541_65489796_65489932
ENSMUST00000142834.8	chr11	+	661	5	FSM	ENSMUSG00000020812.19	ENSMUST00000142834.8	661	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	73.9915535720125	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTGGTAGCATTGTGGG	NA	False	NA	0	True	AATAAA	-13	NA	116562494	116566621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116562583_116563489_116563565_116564763_116564898_116565125_116565202_116566333
ENSMUST00000142861.2	chr2	+	1460	5	FSM	ENSMUSG00000001999.16	ENSMUST00000142861.2	1460	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	50.701947694344	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAAAAAAAAAAAGAGG	2209	False	NA	NA	False	AAAAAG	-43	NA	126912584	126929790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764
ENSMUST00000142948.8	chr10	-	1961	14	FSM	ENSMUSG00000034758.13	ENSMUST00000142948.8	1961	14	0	0	0	0	multi-exon	TRUE	canonical	2	14	junction_8	19.8357158000858	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTGTCCTTTACCCAG	NA	False	NA	-14	True	NA	NA	NA	81436709	81426737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431210_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
ENSMUST00000142957.6	chr5	-	2084	7	FSM	ENSMUSG00000023452.20	ENSMUST00000142957.6	2084	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	252.221904062452	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAAACAAAAACT	NA	False	NA	NA	False	NA	NA	NA	32942983	32893665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32942892
ENSMUST00000142980.2	chr18	+	662	3	FSM	ENSMUSG00000024608.12	ENSMUST00000142980.2	662	3	0	0	0	0	multi-exon	FALSE	canonical	3	20921	junction_1	3556	1621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTGACTTAAATGGGGGC	NA	False	NA	NA	False	NA	NA	NA	60907737	60910491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_60907759_60909472_60909624_60910001
ENSMUST00000142997.8	chr10	-	1118	4	FSM	ENSMUSG00000035478.15	ENSMUST00000142997.8	1118	4	0	0	0	0	multi-exon	FALSE	canonical	3	1197	junction_3	65.3214274866134	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80231004	80228372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897
ENSMUST00000143011.8	chr16	-	675	4	FSM	ENSMUSG00000023791.19	ENSMUST00000143011.8	675	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	202.902822936389	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTAACTGGTTAGTTTG	NA	False	NA	-8	True	AATAAA	-22	NA	31918522	31903241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_31903445_31904054_31904156_31911161_31911304_31918293
ENSMUST00000143044.2	chr9	+	566	4	FSM	ENSMUSG00000036781.14	ENSMUST00000143044.2	566	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	5436.29598164044	47526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCTCCCTCTGCTTCTCT	NA	False	NA	34	True	AATAAA	-18	NA	66853636	66856798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_66853795_66854112_66854222_66854868_66854980_66856610
ENSMUST00000143085.8	chr7	+	2963	17	FSM	ENSMUSG00000035632.17	ENSMUST00000143085.8	2963	17	0	0	0	0	multi-exon	FALSE	canonical	3	860	junction_1	81.2505528827343	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGAGGCCTCTCCTATCC	2750	False	NA	NA	False	AATAAA	-22	NA	3648288	3664107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3648584_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
ENSMUST00000143101.4	chr6	+	546	2	FSM	ENSMUSG00000004285.13	ENSMUST00000143101.4	546	2	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_1	0	964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTGGTATGGATACG	275	False	NA	37	True	ATTAAA	-19	NA	29468066	29470511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_29468167_29470065
ENSMUST00000143170.9	chr16	-	2272	14	FSM	ENSMUSG00000022538.21	ENSMUST00000143170.9	2272	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_13	197.455290422861	811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTGATATTCTTATTGTC	NA	False	NA	-8	True	ATTAAA	-14	NA	30406407	30380188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386653_30387922_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30396716_30396816_30399776_30399864_30400873_30400961_30401348_30401470_30406255
ENSMUST00000143231.2	chr7	+	827	3	FSM	ENSMUSG00000008373.17	ENSMUST00000143231.2	827	3	0	0	0	0	multi-exon	FALSE	canonical	3	674	junction_1	159.5	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAGAAAAATAAACATG	2940	False	NA	NA	False	AAAAAG	-2	NA	3632990	3634420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3633056_3633556_3633742_3633843
ENSMUST00000143260.2	chr13	-	2509	5	FSM	ENSMUSG00000074863.6	ENSMUST00000143260.2	2509	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	116.358014335068	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTATGGGTGCATATTT	5491	False	NA	-4	True	ATTAAA	-17	NA	62874503	62847219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_62849306_62853514_62853576_62853943_62854071_62871911_62872032_62874388
ENSMUST00000143349.8	chr2	-	1923	5	FSM	ENSMUSG00000027184.15	ENSMUST00000143349.8	1923	5	0	0	0	0	multi-exon	FALSE	canonical	3	1726	junction_3	119.813135757312	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGAGTACTGGTGGAAT	2740	False	NA	-9	True	NA	NA	NA	103603126	103597451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013
ENSMUST00000143398.3	chr2	+	2100	19	FSM	ENSMUSG00000014353.16	ENSMUST00000143398.3	2100	19	0	0	0	0	multi-exon	FALSE	canonical	1	36	junction_11	26.3253621315648	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAACCAGAGAGAGCTACA	NA	False	NA	NA	False	NA	NA	NA	128660222	128693659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_128660424_128665002_128665064_128666335_128666431_128668176_128668309_128670325_128670377_128672429_128672521_128673117_128673180_128673369_128673554_128676034_128676135_128679221_128679316_128682651_128682724_128683154_128683264_128683344_128683404_128684515_128684620_128687380_128687455_128688648_128688720_128690924_128690978_128692223_128692255_128693203
ENSMUST00000143402.3	chr8	+	993	5	FSM	ENSMUSG00000005161.16	ENSMUST00000143402.3	993	5	0	0	0	0	multi-exon	FALSE	canonical	3	3496	junction_3	263.896760116527	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACATAAAATAAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	85696322	85698732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190
ENSMUST00000143412.8	chr5	+	3330	15	FSM	ENSMUSG00000029267.18	ENSMUST00000143412.8	3330	15	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	498.553709263514	811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTAGCTCTTCATTTT	NA	False	NA	104	True	AGTAAA	-14	NA	108213607	108256136	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_108213832_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
ENSMUST00000143430.2	chr6	+	505	2	FSM	ENSMUSG00000046679.17	ENSMUST00000143430.2	505	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCATTTCTCGGGTCTCA	1787	False	NA	NA	False	ATTAAA	-1	NA	86415689	86416470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_86415830_86416105
ENSMUST00000143438.8	chr10	-	2403	4	FSM	ENSMUSG00000004667.19	ENSMUST00000143438.8	2403	4	0	0	0	0	multi-exon	FALSE	canonical	3	2552	junction_2	187.276978474843	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5600	False	NA	-19	True	ATTAAA	-19	NA	79875544	79871782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_79872136_79872360_79872433_79872597_79874448_79875416
ENSMUST00000143444.8	chr11	-	568	3	FSM	ENSMUSG00000032892.15	ENSMUST00000143444.8	568	3	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_2	39.5	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTCTGTGCCTTCAAAT	7736	False	NA	-5	True	AATAAA	-19	NA	68864169	68863312	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_68863568_68863768_68863855_68863942
ENSMUST00000143494.3	chr4	-	997	5	FSM	ENSMUSG00000028637.17	ENSMUST00000143494.3	997	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	9.01041064547005	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGTGTTAGTAATTTC	2127	False	NA	NA	False	NA	NA	NA	119217089	119209442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_119209850_119210266_119210422_119213834_119214045_119216754_119216935_119217044
ENSMUST00000143587.3	chr2	+	659	4	FSM	ENSMUSG00000074578.15	ENSMUST00000143587.3	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_1	54.8351063543137	2940	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905138	166907782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_166905218_166905555_166905648_166907078_166907138_166907353
ENSMUST00000143598.8	chr8	-	572	2	FSM	ENSMUSG00000058833.12	ENSMUST00000143598.8	572	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70958762	70956944	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70957160_70958405
ENSMUST00000143600.2	chr14	+	521	3	FSM	ENSMUSG00000021963.18	ENSMUST00000143600.2	521	3	0	0	0	0	multi-exon	FALSE	canonical	3	2870	junction_1	123.5	1255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGGACTTTGCCATTAAGC	NA	False	NA	NA	False	AATAAA	-21	NA	58035882	58039604	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_58036055_58038950_58039074_58039378
ENSMUST00000143657.8	chr8	+	930	7	FSM	ENSMUSG00000002395.15	ENSMUST00000143657.8	930	7	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	109.782613478739	2171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819860	71822376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71820014_71820287_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
ENSMUST00000143673.2	chr11	+	1428	4	FSM	ENSMUSG00000087107.9	ENSMUST00000143673.2	1428	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6.23609564462324	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGTATGTATGTATGTA	NA	False	NA	NA	False	NA	NA	NA	83114401	83117430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_83114478_83115035_83115137_83115277_83115458_83116359
ENSMUST00000143678.8	chr2	+	920	7	FSM	ENSMUSG00000062647.17	ENSMUST00000143678.8	920	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1889.33392143016	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26801017	26803330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_26801139_26801433_26801584_26802030_26802172_26802304_26802458_26802682_26802814_26802999_26803070_26803176
ENSMUST00000143699.8	chr8	-	3351	27	FSM	ENSMUSG00000070000.14	ENSMUST00000143699.8	3351	27	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_16	36.8870216588966	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAACCATAAAATTATTTC	NA	False	NA	-32	True	NA	NA	NA	72178310	72161063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_72161476_72161569_72162030_72162218_72162419_72162637_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113_72165209_72165543_72165596_72165944_72165970_72166058_72166236_72166618_72166679_72166915_72166941_72167343_72167417_72167526_72167572_72168120_72168218_72168328_72168428_72169200_72169306_72169415_72169569_72169785_72169928_72170079_72170155_72170930_72171023_72173895_72173949_72174462_72174504_72178276
ENSMUST00000143813.2	chr11	+	619	2	FSM	ENSMUSG00000043644.5	ENSMUST00000143813.2	619	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGAGCTCAACGTCTAAA	2995	False	NA	NA	False	AATAAA	-19	NA	120239503	120242016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120239689_120241582
ENSMUST00000143941.3	chr6	+	530	2	FSM	ENSMUSG00000029686.16	ENSMUST00000143941.3	530	2	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTCTTTTTCAGCAGAG	NA	False	NA	7	True	AATAAA	-18	NA	47431321	47462111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_47431418_47461677
ENSMUST00000143961.2	chr17	+	614	3	FSM	ENSMUSG00000068039.14	ENSMUST00000143961.2	614	3	0	0	0	0	multi-exon	FALSE	canonical	3	3521	junction_2	31.5	866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCGTGAATTTGGAGCCT	NA	False	NA	NA	False	AATAAA	-25	NA	13135325	13137266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_13135517_13136684_13136771_13136929
ENSMUST00000143992.3	chr9	-	608	3	FSM	ENSMUSG00000045519.16	ENSMUST00000143992.3	608	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0.5	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTTCTTGTCATATATT	NA	False	NA	NA	False	NA	NA	NA	20296473	20263876	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_20264138_20265359_20265546_20296312
ENSMUST00000144051.8	chr4	-	523	4	FSM	ENSMUSG00000047675.16	ENSMUST00000144051.8	523	4	0	0	0	0	multi-exon	FALSE	canonical	3	8358	junction_3	2305.8312070825	795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGCGACTTGGGGGGGG	NA	False	NA	NA	False	NA	NA	NA	117013266	117011706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_117012011_117012204_117012305_117012767_117012875_117013254
ENSMUST00000144065.6	chr5	-	872	7	FSM	ENSMUSG00000029469.15	ENSMUST00000144065.6	872	7	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_5	10.4682058316281	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTTTCTCATTTCCTA	1255	False	NA	NA	False	NA	NA	NA	122752569	122740244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_122740442_122740747_122740814_122745030_122745121_122747235_122747417_122748140_122748245_122749005_122749171_122752500
ENSMUST00000144149.2	chr14	-	751	2	FSM	ENSMUSG00000021905.15	ENSMUST00000144149.2	751	2	0	0	0	0	multi-exon	FALSE	canonical	3	570	junction_1	0	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATCCTGAGTGTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	31807243	31804832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_31805204_31806863
ENSMUST00000144156.2	chr7	-	640	6	FSM	ENSMUSG00000061877.14	ENSMUST00000144156.2	640	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.49799919935936	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTAGGATGTTGGAGGTT	3284	False	NA	NA	False	ATTAAA	-16	NA	81148029	81144022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_81144127_81144873_81145122_81145326_81145529_81145890_81145909_81146597_81146616_81147979
ENSMUST00000144166.8	chr4	+	326	3	FSM	ENSMUSG00000085525.8	ENSMUST00000144166.8	326	3	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_2	93	2512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTGCTGTTCACATT	NA	False	NA	33	True	NA	NA	NA	146206900	146215004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_146207052_146209452_146209546_146214922
ENSMUST00000144185.5	chrX	+	476	5	FSM	ENSMUSG00000041718.17	ENSMUST00000144185.5	476	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	353.473478495912	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGGGCTGTTACAGTCAA	NA	False	NA	NA	False	NA	NA	NA	143101018	143107017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_143101118_143102998_143103058_143105007_143105147_143106350_143106524_143107011
ENSMUST00000144216.2	chr16	-	929	3	FSM	ENSMUSG00000023791.19	ENSMUST00000144216.2	929	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	21	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATTATTTTAAGGCAAGA	NA	False	NA	NA	False	NA	NA	NA	31918529	31915861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_31915882_31917518_31917615_31917716
ENSMUST00000144236.9	chr17	-	2017	5	FSM	ENSMUSG00000024150.13	ENSMUST00000144236.9	2017	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	147.031246679065	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573332	87562085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87571568_87571794_87573262
ENSMUST00000144285.2	chr17	-	553	3	FSM	ENSMUSG00000040048.15	ENSMUST00000144285.2	553	3	0	0	0	0	multi-exon	FALSE	canonical	3	2001	junction_1	144	1126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTCTGGTGACTAAA	1360	False	NA	NA	False	AATAAA	-22	NA	24941880	24941033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24941195_24941354_24941495_24941628
ENSMUST00000144303.2	chr5	-	483	4	FSM	ENSMUSG00000004849.15	ENSMUST00000144303.2	483	4	0	0	0	0	multi-exon	FALSE	canonical	3	639	junction_3	64.1162139313363	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGAGGAGGAGGATTAC	NA	False	NA	NA	False	NA	NA	NA	137074896	137066249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_137066410_137070622_137070732_137071917_137072097_137074861
ENSMUST00000144311.2	chr4	+	557	3	FSM	ENSMUSG00000028700.15	ENSMUST00000144311.2	557	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	0.5	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGTTCATGCATATAACT	NA	False	NA	NA	False	AATGAA	-36	NA	115981036	115996047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_115981314_115994890_115995026_115995902
ENSMUST00000144355.8	chr1	+	691	3	FSM	ENSMUSG00000026201.13	ENSMUST00000144355.8	691	3	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	43	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCCCTGGTTTGGCCTTT	NA	False	NA	NA	False	CATAAA	-14	NA	75187491	75188879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_75187697_75187883_75188059_75188568
ENSMUST00000144366.8	chrX	-	709	6	FSM	ENSMUSG00000087174.8	ENSMUST00000144366.8	709	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	33.8904116233486	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTGTGGATTTACATGTA	NA	False	NA	-3	True	AATAAA	-17	NA	104113661	104087408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_104087718_104091514_104091617_104110364_104110484_104112176_104112235_104113216_104113282_104113605
ENSMUST00000144367.2	chrX	+	530	4	FSM	ENSMUSG00000079480.4	ENSMUST00000144367.2	530	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	540.53389245161	5323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTAAGTGTTTTCTATTT	NA	False	NA	NA	False	AATAAA	-15	NA	101163174	101171272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_101163337_101165273_101165348_101170622_101170743_101171098
ENSMUST00000144384.3	chr6	+	1131	3	FSM	ENSMUSG00000061758.14	ENSMUST00000144384.3	1131	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAGAAATTGAAGGGA	3037	False	NA	NA	False	NA	NA	NA	34361183	34366514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_34361343_34364606_34364775_34365710
ENSMUST00000144422.2	chr19	-	748	2	FSM	ENSMUSG00000024906.11	ENSMUST00000144422.2	748	2	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	0	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTGACATGG	NA	False	NA	NA	False	NA	NA	NA	5538339	5537495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5537920_5538015
ENSMUST00000144523.8	chr9	-	1152	4	FSM	ENSMUSG00000037742.15	ENSMUST00000144523.8	1152	4	0	0	0	0	multi-exon	FALSE	canonical	3	12130	junction_3	629.581342374968	4754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGACACATTTTTAAGATAG	8136	False	NA	NA	False	NA	NA	NA	78387970	78386559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_78387057_78387133_78387431_78387522_78387703_78387792
ENSMUST00000144531.2	chr11	+	671	3	FSM	ENSMUSG00000059278.10	ENSMUST00000144531.2	671	3	0	0	0	0	multi-exon	FALSE	canonical	3	948	junction_1	166	10797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286472	69287506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69286799_69287002_69287187_69287345
ENSMUST00000144538.2	chr7	+	1490	3	FSM	ENSMUSG00000072244.12	ENSMUST00000144538.2	1490	3	0	0	0	0	multi-exon	FALSE	canonical	3	703	junction_1	31	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	103867999	103876940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_103868091_103874713_103875188_103876015
ENSMUST00000144571.2	chr7	+	1013	2	FSM	ENSMUSG00000047721.9	ENSMUST00000144571.2	1013	2	0	0	0	0	multi-exon	FALSE	canonical	3	2284	junction_1	0	9347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGGCCCAGCTGGTCTCA	576	False	NA	12	True	ATTAAA	-7	NA	126294572	126295859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126295453_126295726
ENSMUST00000144574.8	chr5	+	2758	29	FSM	ENSMUSG00000029176.14	ENSMUST00000144574.8	2758	29	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	115.372837278246	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGTTCCATCCTTGTG	NA	False	NA	21	True	AATAAA	-21	NA	52991467	53024084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_52991735_52993019_52993126_52993232_52993306_52996963_52997097_52999057_52999133_52999246_52999274_52999365_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53005332_53005398_53005935_53005979_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014149_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
ENSMUST00000144643.8	chrX	-	1497	6	FSM	ENSMUSG00000015668.14	ENSMUST00000144643.8	1497	6	0	0	0	0	multi-exon	FALSE	canonical	3	516	junction_1	29.9506260368627	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTGCTTGAATATAAAAT	NA	False	NA	-4	True	AATAAA	-17	NA	99669544	99666488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893
ENSMUST00000144647.8	chr10	+	1758	6	FSM	ENSMUSG00000113262.2	ENSMUST00000144647.8	1758	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	364.148541120241	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCATGACCTTTTTGTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	81220299	81227394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_81220413_81221552_81221882_81222246_81222324_81223073_81223315_81226192_81226419_81226622
ENSMUST00000144705.9	chr4	+	935	4	FSM	ENSMUSG00000086290.10	ENSMUST00000144705.9	935	4	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	29.9369708257569	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035988	132038335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132036219_132037148_132037215_132037461_132037527_132037761
ENSMUST00000144744.8	chr2	+	1918	2	FSM	ENSMUSG00000027397.15	ENSMUST00000144744.8	1918	2	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAAAAAAAAAAGTCGA	NA	False	NA	NA	False	NA	NA	NA	129040722	129043096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_129040913_129041368
ENSMUST00000144748.8	chr7	+	2286	5	FSM	ENSMUSG00000042289.12	ENSMUST00000144748.8	2286	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	5.22015325445528	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1884	False	NA	14	True	AATAAA	-15	NA	127399775	127402974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401286_127401407
ENSMUST00000144766.2	chr8	+	1551	5	FSM	ENSMUSG00000019428.17	ENSMUST00000144766.2	1551	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	508.381008693283	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTATCCATAGCTGCTCC	NA	False	NA	NA	False	NA	NA	NA	70980411	70985103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984171
ENSMUST00000144776.7	chr6	+	777	7	FSM	ENSMUSG00000029993.17	ENSMUST00000144776.7	777	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1499.83763010089	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTAGGTATTAGCATCCTC	NA	False	NA	NA	False	ATTAAA	-22	NA	86986870	87000168	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_86986942_86989888_86989990_86992547_86992684_86993157_86993377_86996346_86996414_86997700_86997825_87000109
ENSMUST00000144777.8	chr3	-	1332	4	FSM	ENSMUSG00000027953.14	ENSMUST00000144777.8	1332	4	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_3	10.1434160364686	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGCAGAGTGATGTGTT	NA	False	NA	-33	True	AATAAA	-15	NA	89177832	89175554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133
ENSMUST00000144816.9	chr15	-	1669	6	FSM	ENSMUSG00000022552.17	ENSMUST00000144816.9	1669	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	53.2450936706848	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGTGTTCTGTTCTTGG	8149	False	NA	-4	True	ATTAAA	-15	NA	76235275	76231240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76231386_76231458_76231588_76231681_76232205_76232285_76232428_76232500_76232636_76234680
ENSMUST00000144930.2	chr9	+	481	2	FSM	ENSMUSG00000066442.18	ENSMUST00000144930.2	481	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATCAATAGAAATTATTA	NA	False	NA	NA	False	AATAAA	-21	NA	89093438	89122279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_89093535_89121894
ENSMUST00000145033.8	chr11	-	741	3	FSM	ENSMUSG00000020182.17	ENSMUST00000145033.8	741	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	14.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTCCTGTGTCACTCCT	5638	False	NA	NA	False	AATAAA	-18	NA	11830629	11823336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_11823776_11826244_11826359_11830441
ENSMUST00000145043.2	chr2	+	419	3	FSM	ENSMUSG00000039001.13	ENSMUST00000145043.2	419	3	0	0	0	0	multi-exon	FALSE	canonical	3	5195	junction_1	1122	2555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGGCTTAATAGTGCAT	NA	False	NA	NA	False	NA	NA	NA	179899210	179899936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_179899241_179899413_179899645_179899778
ENSMUST00000145074.2	chrX	-	1335	2	FSM	ENSMUSG00000031304.19	ENSMUST00000145074.2	1335	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAGAACAAGAAATTAGAA	NA	False	NA	NA	False	NA	NA	NA	100311796	100310271	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_100311471_100311660
ENSMUST00000145080.8	chr8	+	1430	3	FSM	ENSMUSG00000031631.16	ENSMUST00000145080.8	1430	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	5	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAACACTTGGAGTATCA	NA	False	NA	NA	False	AATATA	-13	NA	46616728	46623832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_46616787_46617798_46617934_46622595
ENSMUST00000145104.8	chr11	-	597	5	FSM	ENSMUSG00000020737.13	ENSMUST00000145104.8	597	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	740.766663666772	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTCTGTCTGTCTGTTTG	NA	False	NA	-111	True	NA	NA	NA	115405174	115388956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115389126_115391491_115391550_115392830_115392929_115393857_115394001_115405045
ENSMUST00000145118.8	chr12	-	4427	19	FSM	ENSMUSG00000052593.17	ENSMUST00000145118.8	4427	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	37.6614630951738	712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATGAATGATACGAGCCA	NA	False	NA	NA	False	AATAAA	-36	NA	21423594	21373517	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_21375628_21376119_21376171_21378045_21378135_21379054_21379157_21380033_21380165_21382076_21382212_21382570_21382675_21383954_21384155_21386633_21386787_21390472_21390562_21390675_21390821_21392864_21392979_21395621_21395712_21397297_21397432_21399785_21399955_21401543_21401633_21403883_21404015_21411659_21411793_21423336
ENSMUST00000145216.8	chr8	-	1329	4	FSM	ENSMUSG00000031604.11	ENSMUST00000145216.8	1329	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	331.816214190928	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTAGCTGCCATGTTTT	NA	False	NA	-23	True	AATAAA	-34	NA	65186615	65171242	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_65172216_65173375_65173531_65175497_65175625_65186541
ENSMUST00000145223.2	chr11	-	400	2	FSM	ENSMUSG00000020451.18	ENSMUST00000145223.2	400	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTATTGAATTTAGCAATC	NA	False	NA	NA	False	AATAAA	-29	NA	3359189	3346778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_3347035_3359045
ENSMUST00000145255.2	chr12	-	924	3	FSM	ENSMUSG00000021270.14	ENSMUST00000145255.2	924	3	0	0	0	0	multi-exon	FALSE	canonical	3	11114	junction_1	846	595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAGAAGATAAAGGAAAAG	NA	False	NA	NA	False	NA	NA	NA	110662106	110660608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_110660778_110661004_110661139_110661485
ENSMUST00000145276.8	chr17	+	810	6	FSM	ENSMUSG00000073468.13	ENSMUST00000145276.8	810	6	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	242.374586126516	699	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTTCTGGATCAACTG	2990	False	NA	NA	False	AATAAA	-17	NA	8530000	8546272	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_8530118_8539431_8539514_8540631_8540668_8542108_8542168_8543265_8543296_8545786
ENSMUST00000145317.2	chr2	+	436	2	FSM	ENSMUSG00000002102.16	ENSMUST00000145317.2	436	2	0	0	0	0	multi-exon	FALSE	canonical	3	2116	junction_1	0	643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGTCTTTCTCAGCCTCT	2522	False	NA	20	True	AATAAA	-21	NA	90888453	90889779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_90888501_90889390
ENSMUST00000145327.2	chr2	+	611	2	FSM	ENSMUSG00000039849.7	ENSMUST00000145327.2	611	2	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	0	2537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGCACGCAAAGAAAATCT	5896	False	NA	44	True	NA	NA	NA	164721223	164725119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_164721410_164724694
ENSMUST00000145335.3	chr2	+	779	3	FSM	ENSMUSG00000027405.17	ENSMUST00000145335.3	779	3	0	0	0	0	multi-exon	FALSE	canonical	3	2327	junction_2	43.5	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACCCCAATAAAAACACA	NA	False	NA	-2	True	NA	NA	NA	130119630	130121200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_130119891_130120075_130120211_130120816
ENSMUST00000145364.8	chr4	+	2151	6	FSM	ENSMUSG00000037266.19	ENSMUST00000145364.8	2151	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	379.006385170488	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134650955	134654683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_134651079_134651185_134651794_134652603_134652744_134653087_134653133_134653336_134654130_134654241
ENSMUST00000145417.2	chr18	+	875	1	FSM	ENSMUSG00000085939.4	ENSMUST00000145417.2	875	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	525	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCACCAAAGCAAACGAAAAT	NA	False	NA	NA	False	ATTAAA	-34	NA	50267792	50268667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_50267800_50268700
ENSMUST00000145447.8	chr6	+	2373	8	FSM	ENSMUSG00000004264.18	ENSMUST00000145447.8	2373	8	0	0	0	0	multi-exon	FALSE	canonical	1	924	junction_7	631.805091360768	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691923_124692022_124692127_124692544_124692623_124692916_124693394_124693568
ENSMUST00000145456.2	chrX	-	599	3	FSM	ENSMUSG00000025742.6	ENSMUST00000145456.2	599	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	111.5	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTATGTCCTAAGAT	NA	False	NA	NA	False	AATAAA	-25	NA	166165706	166155404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_166155579_166156998_166157183_166165465
ENSMUST00000145468.2	chr4	-	1097	6	FSM	ENSMUSG00000028688.14	ENSMUST00000145468.2	1097	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	50.9729339944249	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAAGGTCACACAAGTAGC	3056	False	NA	NA	False	AAAAAG	-37	NA	116663720	116661978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_116662253_116662328_116662598_116662682_116662943_116663181_116663341_116663455_116663553_116663682
ENSMUST00000145474.8	chr11	-	641	5	FSM	ENSMUSG00000047342.18	ENSMUST00000145474.8	641	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	12.1243556529821	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAACATTTTTTCACTC	NA	False	NA	NA	False	AATAAA	-15	NA	62680235	62674341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_62674588_62675704_62675820_62678784_62678871_62679755_62679916_62680201
ENSMUST00000145477.8	chrX	-	1540	10	FSM	ENSMUSG00000071708.12	ENSMUST00000145477.8	1540	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	195.70127146833	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGATTAGCAGTGCTTCA	NA	False	NA	-46	True	ATTAAA	-27	NA	156275062	156228691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_156229173_156230350_156230467_156237829_156237910_156243322_156243413_156244171_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
ENSMUST00000145481.8	chr2	-	1162	9	FSM	ENSMUSG00000026946.10	ENSMUST00000145481.8	1162	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.57087047515039	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGTCTTCTTACTCTTT	8642	False	NA	NA	False	CATAAA	-17	NA	51863016	51838512	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_51838789_51839995_51840103_51842453_51842641_51842787_51842895_51845937_51846101_51848908_51849005_51850582_51850673_51862599_51862640_51862920
ENSMUST00000145518.8	chrX	+	1824	10	FSM	ENSMUSG00000041133.12	ENSMUST00000145518.8	1824	10	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	207.77290546872	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAAAAAAGAACGTTT	NA	False	NA	NA	False	NA	NA	NA	150799423	150819208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097
ENSMUST00000145559.8	chr7	+	578	4	FSM	ENSMUSG00000019738.16	ENSMUST00000145559.8	578	4	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_3	50.6776303927307	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTAGTGTTTCCCGTGT	NA	False	NA	11	True	AATAAA	-11	NA	29931766	29932808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_29931962_29932174_29932407_29932491_29932544_29932709
ENSMUST00000145571.2	chr1	+	758	3	FSM	ENSMUSG00000018196.19	ENSMUST00000145571.2	758	3	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_1	58.5	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCCATGCTGAAAGGGGAT	NA	False	NA	NA	False	NA	NA	NA	143615355	143621337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_143615497_143617385_143617450_143620784
ENSMUST00000145593.8	chr6	-	649	4	FSM	ENSMUSG00000045896.15	ENSMUST00000145593.8	649	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	4.98887651569859	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGGTTAGAAGCCTGAA	NA	False	NA	NA	False	NA	NA	NA	83808695	83786693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83787058_83791703_83791852_83808252_83808311_83808616
ENSMUST00000145634.9	chr18	+	1538	8	FSM	ENSMUSG00000025421.16	ENSMUST00000145634.9	1538	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	170.606361581991	1035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAATTAGACATTGTT	NA	False	NA	19	True	NA	NA	NA	77031839	77059101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_77031882_77033038_77033054_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
ENSMUST00000145735.6	chr3	+	881	4	FSM	ENSMUSG00000087260.6	ENSMUST00000145735.6	881	4	0	0	0	0	multi-exon	FALSE	canonical	3	1062	junction_2	64.8194072447099	16925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTGGTTCATTTCTGG	3010	False	NA	9	True	AATAAA	-13	NA	107186173	107191395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_107186430_107187185_107187248_107189224_107189343_107190950
ENSMUST00000145795.2	chr4	-	1014	2	FSM	ENSMUSG00000054428.13	ENSMUST00000145795.2	1014	2	0	0	0	0	multi-exon	FALSE	canonical	3	7869	junction_1	0	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACAAAACAAAAAA	9305	False	NA	NA	False	NA	NA	NA	132260906	132259798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132260699_132260792
ENSMUST00000145881.8	chr7	-	895	2	FSM	ENSMUSG00000040139.15	ENSMUST00000145881.8	895	2	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	0	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGTCTGGCTTGGTGT	NA	False	NA	-7	True	ATTAAA	-14	NA	137012485	136977302	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_136978081_137012368
ENSMUST00000145959.8	chr7	-	2362	17	FSM	ENSMUSG00000038520.16	ENSMUST00000145959.8	2362	17	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	59.8690954813082	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGCTGGCTGGCATCAGG	7699	False	NA	-10	True	AATAAA	-15	NA	44498503	44490455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44490845_44490966_44491054_44491406_44491524_44491609_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
ENSMUST00000145976.2	chr4	-	718	2	FSM	ENSMUSG00000028639.15	ENSMUST00000145976.2	718	2	0	0	0	0	multi-exon	FALSE	canonical	3	10943	junction_1	0	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAAAAAAAAAAGGC	NA	False	NA	9	True	NA	NA	NA	119136647	119135363	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_119135565_119136130
ENSMUST00000146010.3	chr18	+	430	3	FSM	ENSMUSG00000087590.3	ENSMUST00000146010.3	430	3	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_1	24	24155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACACGTGTATGTTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	33927944	33929039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_33928178_33928435_33928499_33928905
ENSMUST00000146089.8	chr2	+	750	4	FSM	ENSMUSG00000016344.15	ENSMUST00000146089.8	750	4	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	285.921123544395	1276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3436	False	NA	1	True	AATAAA	-17	NA	180829139	180830297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_180829248_180829457_180829680_180829796_180829894_180829974
ENSMUST00000146105.8	chr17	+	599	3	FSM	ENSMUSG00000023984.18	ENSMUST00000146105.8	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	122	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAAATGTTTATTGTCCA	NA	False	NA	NA	False	AATAAA	-12	NA	47922513	47961214	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_47922618_47923887_47924043_47960874
ENSMUST00000146127.2	chr11	-	559	4	FSM	ENSMUSG00000035575.12	ENSMUST00000146127.2	559	4	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_1	32.1074584619974	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTTTCTTACTCTGTGA	NA	False	NA	NA	False	NA	NA	NA	79853193	79849422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_79849705_79849934_79849977_79851572_79851658_79853043
ENSMUST00000146137.8	chr1	-	2777	16	FSM	ENSMUSG00000003458.13	ENSMUST00000146137.8	2777	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	134.272790327088	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTGTTTGGTATTCTTC	8996	False	NA	50	True	ATTAAA	-21	NA	171910362	171893579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171908778_171908884_171910167
ENSMUST00000146166.8	chr4	-	1791	8	FSM	ENSMUSG00000028898.16	ENSMUST00000146166.8	1791	8	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_7	40.7315752763111	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGCTTCTTCAACTGT	2338	False	NA	-2	True	AATAAA	-15	NA	132056827	132039075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132053357_132055779_132055878_132056663
ENSMUST00000146201.8	chr9	+	2009	6	FSM	ENSMUSG00000032309.16	ENSMUST00000146201.8	2009	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	392.751626349274	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGGTGTTGTAATTATTG	NA	False	NA	9	True	AATAAA	-16	NA	55116473	55131715	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
ENSMUST00000146280.2	chr8	-	726	3	FSM	ENSMUSG00000031601.17	ENSMUST00000146280.2	726	3	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_2	66.5	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACTTTAGTTATAGAGA	NA	False	NA	-4	True	AATAAA	-15	NA	40964763	40960358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_40960690_40963055_40963268_40964580
ENSMUST00000146286.2	chr7	+	538	2	FSM	ENSMUSG00000030649.19	ENSMUST00000146286.2	538	2	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCATAGGATTTCGGGGG	7817	False	NA	NA	False	GATAAA	-33	NA	101545614	101547434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_101545658_101546939
ENSMUST00000146297.8	chr2	-	2580	17	FSM	ENSMUSG00000027620.17	ENSMUST00000146297.8	2580	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	722.964372825522	655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAATTTTCGTTTTTCA	NA	False	NA	NA	False	AATAAA	-20	NA	156021500	155989165	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021353
ENSMUST00000146303.2	chr7	+	1185	2	FSM	ENSMUSG00000006333.15	ENSMUST00000146303.2	1185	2	0	0	0	0	multi-exon	FALSE	canonical	3	14286	junction_1	0	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTTTGAACTGTTAGCC	1319	False	NA	NA	False	NA	NA	NA	3707046	3708428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3707448_3707644
ENSMUST00000146322.8	chr8	+	1408	4	FSM	ENSMUSG00000031864.17	ENSMUST00000146322.8	1408	4	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_3	36.0030862874591	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGCTTCAG	NA	False	NA	NA	False	NA	NA	NA	69246607	69251453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410
ENSMUST00000146324.8	chr3	-	1264	5	FSM	ENSMUSG00000050174.16	ENSMUST00000146324.8	1264	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	11.0792599030802	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGTTTTTCTCTACTGA	NA	False	NA	62	True	TATAAA	-29	NA	37474335	37459058	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_37459644_37463656_37463712_37466508_37466565_37470849_37471054_37473971
ENSMUST00000146382.8	chr2	+	2296	7	FSM	ENSMUSG00000026975.11	ENSMUST00000146382.8	2296	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	23.8379948821204	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852477	24862175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
ENSMUST00000146384.8	chr4	+	1336	8	FSM	ENSMUSG00000033423.17	ENSMUST00000146384.8	1336	8	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	303.228680459255	637	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCTTGTGTCTAAGGC	NA	False	NA	25	True	AATAAA	-32	NA	117421954	117531494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_117422096_117439796_117439914_117444981_117445178_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
ENSMUST00000146390.3	chr11	+	2143	2	FSM	ENSMUSG00000047904.7	ENSMUST00000146390.3	2143	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAAGTAAGGTGGTTTTG	NA	False	NA	NA	False	NA	NA	NA	113510167	113516854	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_113510449_113514992
ENSMUST00000146471.2	chr4	-	501	2	FSM	ENSMUSG00000039759.11	ENSMUST00000146471.2	501	2	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	0	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCCCATCTCCAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	152073437	152069915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_152070319_152073339
ENSMUST00000146474.8	chr17	-	764	5	FSM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	54.3570372628973	1300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79202529	79192325	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971_79202099_79202464
ENSMUST00000146511.8	chr5	+	1298	9	FSM	ENSMUSG00000016503.19	ENSMUST00000146511.8	1298	9	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_8	56.9906790624572	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGCTGTTTCCGTCGT	NA	False	NA	23	True	ATTAAA	-23	NA	146885466	146892424	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933_146891994_146892177
ENSMUST00000146585.2	chr11	+	1047	3	FSM	ENSMUSG00000020823.17	ENSMUST00000146585.2	1047	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	191.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGGATTGAAGGAATAGT	NA	False	NA	NA	False	AATAAA	-15	NA	117006077	117019589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_117006178_117007985_117008079_117018735
ENSMUST00000146671.8	chr4	+	314	3	FSM	ENSMUSG00000085525.8	ENSMUST00000146671.8	314	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	211	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAGAAAAAAAAGAAA	NA	False	NA	20	True	NA	NA	NA	146206900	146214948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_146207052_146209452_146209546_146214878
ENSMUST00000146673.2	chr16	+	865	3	FSM	ENSMUSG00000086965.2	ENSMUST00000146673.2	865	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	96	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTTGAGTACCATGCC	NA	False	NA	NA	False	AAAACA	-1	NA	18317650	18320408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18317702_18317795_18317891_18319689
ENSMUST00000146696.2	chr11	+	813	4	FSM	ENSMUSG00000020407.14	ENSMUST00000146696.2	813	4	0	0	0	0	multi-exon	FALSE	canonical	3	2674	junction_3	158.865421732428	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGGACGGGCCTGAGC	NA	False	NA	-62	True	NA	NA	NA	9083014	9086082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_9083349_9084721_9084932_9085163_9085311_9085960
ENSMUST00000146698.2	chr5	+	809	3	FSM	ENSMUSG00000029464.11	ENSMUST00000146698.2	809	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	240	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTGAGGTTTGTAAA	5322	False	NA	NA	False	AATAAA	-42	NA	122519330	122520965	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_122519369_122520110_122520240_122520323
ENSMUST00000146721.2	chr4	+	2358	2	FSM	ENSMUSG00000028261.14	ENSMUST00000146721.2	2358	2	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_1	0	1106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTGGTTTTTTCTTTC	11	True	NA	14	True	AATAAA	-27	NA	24898130	24903505	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_24898677_24901693
ENSMUST00000146749.2	chr13	-	1592	7	FSM	ENSMUSG00000069170.15	ENSMUST00000146749.2	1592	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	8.51958527942137	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTTTAAAGTGTATATGA	2370	False	NA	NA	False	AATAAA	-18	NA	81781260	81727159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_81727970_81729810_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81781125
ENSMUST00000146770.8	chr17	-	685	3	FSM	ENSMUSG00000023944.15	ENSMUST00000146770.8	685	3	0	0	0	0	multi-exon	FALSE	canonical	3	10210	junction_2	156.5	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGATGACAGCGGCAAAG	NA	False	NA	-15	True	NA	NA	NA	45882508	45881370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45881726_45881943_45882104_45882338
ENSMUST00000146823.8	chr2	-	676	4	FSM	ENSMUSG00000089917.8	ENSMUST00000146823.8	676	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_3	13.0724477007517	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACCCTGTATGGTGCGA	4577	False	NA	NA	False	ATTAAA	-21	NA	181223771	181216077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_181216333_181216443_181216551_181216639_181216831_181223648
ENSMUST00000146835.8	chrX	+	959	3	FSM	ENSMUSG00000041115.17	ENSMUST00000146835.8	959	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCTGTCTGATGTATGT	NA	False	NA	NA	False	AATAAA	-12	NA	150961959	150977597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_150962087_150963992_150964089_150976861
ENSMUST00000146846.2	chr2	-	676	6	FSM	ENSMUSG00000086453.8	ENSMUST00000146846.2	676	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	3.37045990927054	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCCCCCAAGTACCACTAA	2092	False	NA	NA	False	NA	NA	NA	164611586	164596183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_164596225_164601148_164601261_164604463_164604529_164604640_164604802_164609632_164609834_164611490
ENSMUST00000146863.2	chr8	+	531	3	FSM	ENSMUSG00000038005.16	ENSMUST00000146863.2	531	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	396.5	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCTCTTCTAGTGTTTC	NA	False	NA	17	True	AATAAA	-30	NA	61343451	61360609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_61343571_61358581_61358755_61360370
ENSMUST00000146867.2	chr17	+	962	5	FSM	ENSMUSG00000044533.16	ENSMUST00000146867.2	962	5	0	0	0	0	multi-exon	FALSE	canonical	2	95	junction_4	4232.31002970009	42734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6378	False	NA	0	True	AATAAA	-19	NA	24939224	24940899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24939427_24939507_24939706_24939942_24940277_24940596_24940702_24940776
ENSMUST00000146927.2	chr7	+	813	5	FSM	ENSMUSG00000006333.15	ENSMUST00000146927.2	813	5	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_3	7209.4740229437	36038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTATTGGTGTGCCTCT	1635	False	NA	0	True	AATAAA	-15	NA	3707362	3709893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3707448_3707644_3707768_3708731_3708919_3709006_3709181_3709649
ENSMUST00000146939.2	chr8	-	432	1	FSM	ENSMUSG00000066902.8	ENSMUST00000146939.2	432	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1892	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGACAATGGAAACACA	NA	False	NA	NA	False	AAGAAA	-19	NA	3634230	3633798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_3633800_3634200
ENSMUST00000146980.2	chr2	+	412	4	FSM	ENSMUSG00000084762.2	ENSMUST00000146980.2	412	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	289.483831826389	10117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTCTGAGCCCAAAATC	NA	False	NA	25	True	AATAAA	-35	NA	135490826	135493983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_135490892_135491052_135491123_135493417_135493478_135493766
ENSMUST00000146995.8	chr2	-	630	8	FSM	ENSMUSG00000005882.19	ENSMUST00000146995.8	630	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	157.689050776184	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGAGGTTGGCCCTGCCCT	NA	False	NA	NA	False	NA	NA	NA	155771976	155712683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155712733_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554_155763648_155771932
ENSMUST00000146998.9	chr7	+	944	9	FSM	ENSMUSG00000056394.21	ENSMUST00000146998.9	944	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	552.157232475497	734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGACCAAGGGGTGAGT	2629	False	NA	NA	False	NA	NA	NA	13012760	13025443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023313_13023422_13025112_13025239_13025381
ENSMUST00000147033.2	chr8	+	422	3	FSM	ENSMUSG00000052446.18	ENSMUST00000147033.2	422	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	200	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTTTTGTTTGTTTGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	72704924	72720088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_72705005_72719637_72719835_72719943
ENSMUST00000147059.8	chr4	-	482	4	FSM	ENSMUSG00000059291.16	ENSMUST00000147059.8	482	4	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_3	4621.70800558504	696	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCCAAACACAGAATCAGCA	NA	False	NA	NA	False	NA	NA	NA	135780065	135777642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135777702_135778481_135778614_135778924_135779028_135779877
ENSMUST00000147060.2	chr6	-	561	2	FSM	ENSMUSG00000014554.14	ENSMUST00000147060.2	561	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAACTCATTGTCAACCAG	NA	False	NA	NA	False	NA	NA	NA	83483889	83467189	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83467591_83483729
ENSMUST00000147096.2	chr2	-	656	3	FSM	ENSMUSG00000036504.7	ENSMUST00000147096.2	656	3	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	365.5	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCACCTGCCAGGCCTTA	5546	False	NA	-80	True	GGGGCT	-34	NA	25464890	25463513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25463712_25464199_25464462_25464694
ENSMUST00000147098.8	chr2	-	593	6	FSM	ENSMUSG00000027620.17	ENSMUST00000147098.8	593	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	953.776787304032	489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGCAAAAGTCGAGAGCG	NA	False	NA	-6	True	AGTAAA	-34	NA	156022067	156014851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_156014943_156016016_156016089_156018322_156018378_156019255_156019306_156021096_156021161_156021806
ENSMUST00000147112.2	chr17	-	855	3	FSM	ENSMUSG00000002769.10	ENSMUST00000147112.2	855	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	10	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCCTGGTGTTTCTT	5346	False	NA	NA	False	AGTAAA	-23	NA	47037727	47036589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_47036898_47036986_47037338_47037531
ENSMUST00000147114.2	chr7	+	719	5	FSM	ENSMUSG00000002043.18	ENSMUST00000147114.2	719	5	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	197.958802532244	3204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	505	False	NA	21	True	AGTAAA	-22	NA	19242634	19250070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_19242758_19248346_19248465_19248931_19249016_19249128_19249223_19249770
ENSMUST00000147115.8	chr9	-	2262	10	FSM	ENSMUSG00000031922.13	ENSMUST00000147115.8	2262	10	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	63.5314639653475	272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGCAGTTTTTAAACT	NA	False	NA	NA	False	TATAAA	-17	NA	13738251	13719120	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
ENSMUST00000147117.8	chr16	+	1947	10	FSM	ENSMUSG00000022884.17	ENSMUST00000147117.8	1947	10	0	0	0	0	multi-exon	FALSE	canonical	3	563	junction_3	486.088189935799	6165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATACCAAAAAAAGTTTGT	6049	False	NA	NA	False	AATAAA	-13	NA	22926503	22932886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUST00000147148.5	chr5	+	922	3	FSM	ENSMUSG00000061461.12	ENSMUST00000147148.5	922	3	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_1	5	2965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3407	False	NA	13	True	ATTAAA	-14	NA	53424479	53435882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_53424701_53434484_53434542_53435238
ENSMUST00000147165.8	chr4	+	1964	10	FSM	ENSMUSG00000028653.17	ENSMUST00000147165.8	1964	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_8	29.573929126016	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGCTGCATTGTCAAT	NA	False	NA	26	True	AATAAA	-30	NA	122910389	122948742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122940667_122940811_122942561_122942674_122942944_122943058_122943269_122943348_122946276_122946395_122947915
ENSMUST00000147196.3	chr10	-	860	4	FSM	ENSMUSG00000019797.12	ENSMUST00000147196.3	860	4	0	0	0	0	multi-exon	TRUE	canonical	3	617	junction_3	154.165135127528	8380	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTCACCGGAGCACTCT	NA	False	NA	-12	True	AATAAA	-17	NA	43416964	43401128	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_43401405_43406593_43406667_43408671_43409154_43416935
ENSMUST00000147267.2	chr7	+	881	2	FSM	ENSMUSG00000002083.14	ENSMUST00000147267.2	881	2	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_1	0	740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGCCTCCTGGAGCCAGA	832	False	NA	NA	False	NA	NA	NA	16047441	16051622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_16047743_16051042
ENSMUST00000147330.8	chr5	+	1671	11	FSM	ENSMUSG00000029516.20	ENSMUST00000147330.8	1671	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	12.568213874692	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	8481	False	NA	NA	False	CATAAA	-36	NA	115983336	116063761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_115983383_115984405_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452
ENSMUST00000147345.8	chr2	-	1351	9	FSM	ENSMUSG00000026766.17	ENSMUST00000147345.8	1351	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	284.132011572086	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186707	50169892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_50170415_50170584_50170671_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182911_50186263_50186322_50186654
ENSMUST00000147407.2	chr13	-	534	4	FSM	ENSMUSG00000021606.9	ENSMUST00000147407.2	534	4	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_3	967.204333231723	34190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATAGTGAGTTGTTTCT	NA	False	NA	-8	True	AATAAA	-14	NA	73476571	73467997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_73468180_73468412_73468536_73475534_73475589_73476396
ENSMUST00000147425.2	chr2	+	1381	3	FSM	ENSMUSG00000085438.2	ENSMUST00000147425.2	1381	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_2	178.5	571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTTGGACAGATTTT	NA	False	NA	NA	False	TATAAA	-29	NA	119424777	119431227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_119424916_119426739_119426824_119430068
ENSMUST00000147435.8	chr7	+	778	5	FSM	ENSMUSG00000012848.16	ENSMUST00000147435.8	778	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	7593.8368883918	4380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGTCAGGGCATACCACT	NA	False	NA	NA	False	NA	NA	NA	12656244	12660421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_12656476_12656899_12657009_12659318_12659529_12659663_12659793_12660322
ENSMUST00000147452.2	chr4	+	781	2	FSM	ENSMUSG00000028890.14	ENSMUST00000147452.2	781	2	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	0	690	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAATTCATGTTTATA	352	False	NA	4	True	AATAAA	-15	NA	124696374	124699171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_124696437_124698452
ENSMUST00000147467.2	chrX	-	1047	5	FSM	ENSMUSG00000031171.12	ENSMUST00000147467.2	1047	5	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	13.7386316640341	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGTGAAGTCAATGTTT	NA	False	NA	NA	False	AATAAA	-16	NA	8118602	8114760	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
ENSMUST00000147543.2	chr16	-	678	3	FSM	ENSMUSG00000002846.10	ENSMUST00000147543.2	678	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	91	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAATTTTAGTATTTAAT	NA	False	NA	-4	True	ATTAAA	-19	NA	38343003	38337021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_38337233_38338728_38338895_38342702
ENSMUST00000147570.3	chr2	-	1133	8	FSM	ENSMUSG00000027404.17	ENSMUST00000147570.3	1133	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	1649.031750539	952	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTGCCCTCCAAGGCCC	NA	False	NA	NA	False	NA	NA	NA	130021323	130013706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018548_130018673_130018934_130019087_130021153
ENSMUST00000147571.8	chr1	-	1360	6	FSM	ENSMUSG00000026049.12	ENSMUST00000147571.8	1360	6	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_5	107.444125013888	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTTCAGACTAATGTTC	NA	False	NA	NA	False	GATAAA	-28	NA	44141522	44125969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141059
ENSMUST00000147590.2	chr2	+	844	3	FSM	ENSMUSG00000054766.14	ENSMUST00000147590.2	844	3	0	0	0	0	multi-exon	FALSE	canonical	3	15823	junction_2	947	5941	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGGTATAGACGGTGAG	NA	False	NA	NA	False	NA	NA	NA	29960181	29961441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29960368_29960452_29960600_29960930
ENSMUST00000147605.8	chr8	+	966	4	FSM	ENSMUSG00000031767.14	ENSMUST00000147605.8	966	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.86744175568088	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTTGCAATATTCATCT	NA	False	NA	NA	False	NA	NA	NA	114860380	114879046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_114860441_114863077_114863232_114874634_114874734_114878393
ENSMUST00000147630.2	chr17	+	2684	4	FSM	ENSMUSG00000095990.2	ENSMUST00000147630.2	2684	4	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_3	43.3615292883245	1589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTCACCTTCTAAGGGAT	NA	False	NA	NA	False	NA	NA	NA	17341676	17367093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720
ENSMUST00000147632.3	chr13	+	555	3	FSM	ENSMUSG00000071451.11	ENSMUST00000147632.3	555	3	0	0	0	0	multi-exon	FALSE	canonical	3	1035	junction_1	31.5	16204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCATTTTACTTTGTTTT	NA	False	NA	22	True	AATAAA	-22	NA	34346946	34362156	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_34347233_34350043_34350120_34361963
ENSMUST00000147642.2	chr8	+	1865	4	FSM	ENSMUSG00000074247.11	ENSMUST00000147642.2	1865	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	377.602966090045	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921848	71928742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71921970_71924680_71924762_71924838_71924891_71927131
ENSMUST00000147648.2	chr17	-	516	2	FSM	ENSMUSG00000040048.15	ENSMUST00000147648.2	516	2	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	0	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTGAGATGCAGTGGAGAA	NA	False	NA	NA	False	NA	NA	NA	24943368	24941655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24941964_24943160
ENSMUST00000147660.8	chr5	-	1586	4	FSM	ENSMUSG00000047215.15	ENSMUST00000147660.8	1586	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5927.72812017105	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTGATTCAGCAAGCCACA	NA	False	NA	NA	False	NA	NA	NA	65548724	65546019	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_65546954_65547730_65547827_65548081_65548198_65548284
ENSMUST00000147688.8	chr16	-	713	5	FSM	ENSMUSG00000023791.19	ENSMUST00000147688.8	713	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	176.233332545237	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAACCTAATAAATGAGAC	NA	False	NA	-43	True	NA	NA	NA	31918525	31903276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_31903445_31904054_31904156_31911161_31911304_31915817_31915882_31918287
ENSMUST00000147742.9	chrX	-	1991	6	FSM	ENSMUSG00000045010.15	ENSMUST00000147742.9	1991	6	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_5	73.271003814606	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838029	100833953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_100834130_100834212_100834255_100834844_100834891_100835166_100835250_100835786_100835944_100836542
ENSMUST00000147762.9	chr11	-	611	4	FSM	ENSMUSG00000085156.9	ENSMUST00000147762.9	611	4	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_3	5.24933858267454	4604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTGATCGGGTTTGA	NA	False	NA	-1	True	NA	NA	NA	6478779	6475590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6475818_6476354_6476438_6478305_6478375_6478547
ENSMUST00000147780.2	chr9	+	1834	9	FSM	ENSMUSG00000004100.13	ENSMUST00000147780.2	1834	9	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_7	71.605582010064	7607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	13	True	AATAAA	-14	NA	20799580	20803474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_20799614_20799702_20799874_20800633_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802662_20802746_20803044_20803127
ENSMUST00000147782.2	chr11	-	565	2	FSM	ENSMUSG00000020460.16	ENSMUST00000147782.2	565	2	0	0	0	0	multi-exon	FALSE	canonical	3	16484	junction_1	0	11432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	-31	True	AATAAA	-16	NA	29496671	29495845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_29496030_29496290
ENSMUST00000147799.8	chr1	+	855	5	FSM	ENSMUSG00000003464.14	ENSMUST00000147799.8	855	5	0	0	0	0	multi-exon	FALSE	canonical	3	412	junction_2	19.600701518058	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTTTGACTGATTCATT	NA	False	NA	NA	False	TATAAA	-14	NA	171954322	171958578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178
ENSMUST00000147812.8	chr8	-	1532	11	FSM	ENSMUSG00000052926.17	ENSMUST00000147812.8	1532	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	502.65889030236	1063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	4854	False	NA	-8	True	AATAAA	-14	NA	85696069	85684295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488_85692623_85692714_85692917_85694291_85694498_85695914
ENSMUST00000147820.2	chr2	+	599	6	FSM	ENSMUSG00000078887.11	ENSMUST00000147820.2	599	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	84.5846321739357	931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	175661037	175671684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_175661175_175664841_175664897_175666200_175666303_175670021_175670149_175670349_175670411_175671567
ENSMUST00000147867.3	chr16	-	1078	7	FSM	ENSMUSG00000033809.16	ENSMUST00000147867.3	1078	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	158.953260076316	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGGAACGGACTCTGTG	NA	False	NA	-55	True	NA	NA	NA	20429511	20424268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427491_20427640_20429329
ENSMUST00000147908.2	chr10	-	1046	2	FSM	ENSMUSG00000034792.9	ENSMUST00000147908.2	1046	2	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	0	1012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAACTGAGGAAGAGAGAAA	6420	False	NA	NA	False	AATAAA	-25	NA	81344007	81338139	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_81338940_81343761
ENSMUST00000147936.2	chr6	+	663	2	FSM	ENSMUSG00000051124.7	ENSMUST00000147936.2	663	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTGTGGCATATATGTG	2671	False	NA	NA	False	AATAAA	-20	NA	48654444	48656048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_48654850_48655790
ENSMUST00000147964.8	chr8	-	3309	15	FSM	ENSMUSG00000031832.16	ENSMUST00000147964.8	3309	15	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_9	11.7969643276115	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGGTGTGTAAAGCCCAC	1064	False	NA	-2	True	NA	NA	NA	120331961	120324713	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_120326243_120326319_120326458_120326554_120326730_120327172_120327311_120327399_120327536_120327689_120327762_120327849_120327968_120328054_120328172_120328280_120328520_120329496_120329644_120329728_120329819_120329888_120329987_120330119_120330205_120330978_120331118_120331873
ENSMUST00000148086.8	chr9	-	2467	11	FSM	ENSMUSG00000031922.13	ENSMUST00000148086.8	2467	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	79.3466445415306	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGCTAACAAAGGCTTTA	NA	False	NA	NA	False	AATAAA	-25	NA	13738348	13719090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732970_13738141
ENSMUST00000148088.2	chr9	+	676	2	FSM	ENSMUSG00000010607.9	ENSMUST00000148088.2	676	2	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	0	4611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGGAACACGACCAGCC	NA	False	NA	11	True	AATAAA	-11	NA	22068241	22069621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_22068324_22069027
ENSMUST00000148150.8	chr7	-	859	5	FSM	ENSMUSG00000005447.13	ENSMUST00000148150.8	859	5	0	0	0	0	multi-exon	FALSE	canonical	3	385	junction_2	17.4570902500961	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACCCCAACCCACTTCG	8603	False	NA	NA	False	NA	NA	NA	24997307	24994783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796
ENSMUST00000148165.7	chr9	-	1888	10	FSM	ENSMUSG00000032579.15	ENSMUST00000148165.7	1888	10	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_9	18.5818177425483	909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTGTTATTAACATTCA	NA	False	NA	-12	True	AATAAA	-12	NA	107215516	107204890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107214578_107215479
ENSMUST00000148223.8	chr4	-	845	4	FSM	ENSMUSG00000036078.17	ENSMUST00000148223.8	845	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	233.709696465984	508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATACTCCAGGGGGCCAG	34	False	NA	NA	False	NA	NA	NA	41745072	41739100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_41739581_41740549_41740643_41740775_41740977_41745001
ENSMUST00000148235.8	chr8	-	1459	4	FSM	ENSMUSG00000014633.16	ENSMUST00000148235.8	1459	4	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_2	17.3076733143296	4497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTTTGCAGAGTGGCTT	NA	False	NA	NA	False	AATAAA	-32	NA	117648194	117615423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_117616599_117620826_117620899_117637866_117637974_117648089
ENSMUST00000148330.8	chr1	-	1705	12	FSM	ENSMUSG00000026034.18	ENSMUST00000148330.8	1705	12	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_9	47.751422461613	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463225	58451158	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
ENSMUST00000148381.3	chr7	-	959	6	FSM	ENSMUSG00000002635.12	ENSMUST00000148381.3	959	6	0	0	0	0	multi-exon	TRUE	canonical	3	50	junction_1	296.710903068964	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATATGTGTTTACCTTAT	5785	False	NA	NA	False	ATTAAA	-20	NA	33896033	33884057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_33884237_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
ENSMUST00000148403.2	chr7	+	343	4	FSM	ENSMUSG00000035674.14	ENSMUST00000148403.2	343	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	1620.57650921585	16398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTTTTCTTTCGTGGGTT	273	False	NA	22	True	AATAAA	-24	NA	3620389	3623162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3620417_3620615_3620691_3622428_3622507_3622999
ENSMUST00000148418.8	chr12	+	1168	5	FSM	ENSMUSG00000047022.19	ENSMUST00000148418.8	1168	5	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	7.69740215917033	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACATTGTATGTATTTCTT	NA	False	NA	NA	False	NA	NA	NA	57277221	57372861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309
ENSMUST00000148434.2	chr11	-	1992	9	FSM	ENSMUSG00000018697.15	ENSMUST00000148434.2	1992	9	0	0	0	0	multi-exon	FALSE	canonical	3	481	junction_4	26.8348537353942	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84404348	84357730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84400484_84400623_84401024_84401244_84402308_84402405_84402966_84403156_84404117
ENSMUST00000148482.8	chr17	-	1193	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148482.8	1193	6	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_5	123.227269709265	773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	False	NA	-3	True	AATAAA	-19	NA	36208012	36203568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36207871
ENSMUST00000148496.2	chr11	+	388	2	FSM	ENSMUSG00000086468.2	ENSMUST00000148496.2	388	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAAAGGGCTATGCT	NA	False	NA	NA	False	NA	NA	NA	17904003	17905098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_17904086_17904792
ENSMUST00000148508.2	chr1	-	649	3	FSM	ENSMUSG00000073616.11	ENSMUST00000148508.2	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	285.5	1587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGCTTTTAGATGCA	NA	False	NA	-19	True	AATAAA	-30	NA	92569645	92564866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_92565126_92567408_92567482_92569328
ENSMUST00000148535.2	chr11	+	966	2	FSM	ENSMUSG00000018286.7	ENSMUST00000148535.2	966	2	0	0	0	0	multi-exon	FALSE	canonical	3	6021	junction_1	0	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGGGGTATGATGGTAAG	NA	False	NA	NA	False	NA	NA	NA	70416935	70418019	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_70417252_70417369
ENSMUST00000148537.2	chr17	+	510	2	FSM	ENSMUSG00000023939.8	ENSMUST00000148537.2	510	2	0	0	0	0	multi-exon	FALSE	canonical	3	1100	junction_1	0	869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTTTGTGTGAGCAGAG	NA	False	NA	-58	True	NA	NA	NA	46006341	46009326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_46006499_46008973
ENSMUST00000148555.8	chr2	-	2038	13	FSM	ENSMUSG00000039648.15	ENSMUST00000148555.8	2038	13	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_10	50.7807788439681	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCAGCTTCTCTCTTCCT	NA	False	NA	-5	True	AATAAA	-23	NA	30095828	30075137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30082199_30082298_30084065_30084125_30095644
ENSMUST00000148573.2	chr8	+	1118	3	FSM	ENSMUSG00000003812.14	ENSMUST00000148573.2	1118	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	1.5	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATATAGAGTGGGGGTG	NA	False	NA	4	True	AATAAA	-16	NA	85640019	85649544	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85640158_85647022_85647134_85648675
ENSMUST00000148592.2	chr8	+	798	3	FSM	ENSMUSG00000059355.14	ENSMUST00000148592.2	798	3	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_2	13.5	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGCTTCTCTTTTGTTC	NA	False	NA	36	True	TATAAA	-25	NA	85807601	85808968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85807908_85808405_85808504_85808574
ENSMUST00000148605.2	chr4	+	562	2	FSM	ENSMUSG00000063524.14	ENSMUST00000148605.2	562	2	0	0	0	0	multi-exon	FALSE	canonical	3	16292	junction_1	0	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCCCAACCTGTGCTA	NA	False	NA	NA	False	NA	NA	NA	150321699	150324393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_150321798_150323929
ENSMUST00000148629.2	chr2	+	481	5	FSM	ENSMUSG00000039001.13	ENSMUST00000148629.2	481	5	0	0	0	0	multi-exon	FALSE	canonical	3	5195	junction_1	969.972422288386	191320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTGCTTTTGCTGTTTT	NA	False	NA	23	True	AATAAA	-24	NA	179899171	179900235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_179899241_179899413_179899477_179899580_179899645_179899778_179899851_179900022
ENSMUST00000148633.4	chr5	+	2251	8	FSM	ENSMUSG00000003161.16	ENSMUST00000148633.4	2251	8	0	0	0	0	multi-exon	FALSE	canonical	3	434	junction_5	36.6795277382635	1807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAACATTCCATAAGCA	NA	False	NA	-16	True	AGTAAA	-21	NA	8106526	8119151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_8106640_8107537_8107622_8109352_8109423_8112383_8112428_8113259_8113408_8113636_8113751_8114557_8114617_8117532
ENSMUST00000148665.8	chr10	+	2213	9	FSM	ENSMUSG00000020211.16	ENSMUST00000148665.8	2213	9	0	0	0	0	multi-exon	FALSE	canonical	3	1171	junction_7	118.037004261376	1251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGTCTGCTGTGTGTTT	4352	False	NA	29	True	ATTAAA	-17	NA	80634031	80640758	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80634640_80637029_80637193_80637289_80637362_80638231_80638279_80638625_80638736_80639293_80639344_80639416_80639558_80639653_80639723_80639805
ENSMUST00000148721.8	chr17	-	1293	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148721.8	1293	6	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_5	90.4765162901402	1031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	False	NA	-3	True	AATAAA	-19	NA	36208323	36203568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36208082
ENSMUST00000148762.4	chr4	+	2800	4	FSM	ENSMUSG00000078498.6	ENSMUST00000148762.4	2800	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	71.5976411777806	1025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147390130	147418191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_147390233_147409230_147409335_147413438_147413566_147415724
ENSMUST00000148776.2	chr7	-	1133	4	FSM	ENSMUSG00000086477.4	ENSMUST00000148776.2	1133	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	8.17856276425687	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACACCCTCTAATTGGA	9364	False	NA	NA	False	AATAAA	-21	NA	98352135	98331542	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_98332125_98342226_98342478_98342554_98342809_98352089
ENSMUST00000148807.11	chr19	+	937	7	FSM	ENSMUSG00000024845.20	ENSMUST00000148807.11	937	7	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_2	194.337907321815	2022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCACTTTCCTGGGCC	4390	False	NA	NA	False	AATAAA	-24	NA	4175978	4181734	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4176200_4177055_4177132_4177548_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
ENSMUST00000148894.2	chr17	+	1672	10	FSM	ENSMUSG00000024188.17	ENSMUST00000148894.2	1672	10	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	196.74976273379	926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTTACATTAGTGTATT	NA	False	NA	17	True	ATTAAA	-29	NA	26471972	26499697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26472066_26472947_26473019_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
ENSMUST00000148933.8	chr7	-	1140	6	FSM	ENSMUSG00000089832.9	ENSMUST00000148933.8	1140	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_5	134.483604948707	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACACTGTTTATAGTCTTG	NA	False	NA	-33	True	AATAAA	-12	NA	27045027	27041562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27044841
ENSMUST00000148966.2	chr16	+	2315	5	FSM	ENSMUSG00000022679.14	ENSMUST00000148966.2	2315	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	78.6431815226215	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGATTTGGGTATTGTCA	521	False	NA	9	True	NA	NA	NA	13758558	13766446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_13758888_13759983_13760038_13762529_13762601_13764421_13764452_13764615
ENSMUST00000148968.8	chrX	-	1316	3	FSM	ENSMUSG00000041353.13	ENSMUST00000148968.8	1316	3	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	83.5	788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGACTTGAGAGGTATT	NA	False	NA	NA	False	GATAAA	-21	NA	149242150	149191573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_149192597_149203337_149203438_149241957
ENSMUST00000148989.3	chr18	+	1002	2	FSM	ENSMUSG00000062210.14	ENSMUST00000148989.3	1002	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGCAAGATGTGAGAAAAAC	NA	False	NA	NA	False	AAAAAG	-40	NA	50112493	50224068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_50112694_50223266
ENSMUST00000149015.8	chr4	-	818	4	FSM	ENSMUSG00000028245.16	ENSMUST00000149015.8	818	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	3.85861230093008	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACAGTCTGTATTCAAGCT	NA	False	NA	NA	False	NA	NA	NA	6399006	6396410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_6396818_6398318_6398429_6398544_6398648_6398808
ENSMUST00000149076.8	chr11	+	1316	5	FSM	ENSMUSG00000032615.15	ENSMUST00000149076.8	1316	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	25.0337272494529	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCTGTGGCCTTCTC	2645	False	NA	6	True	AATAAA	-16	NA	59730272	59767359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_59730583_59743616_59743718_59751575_59751637_59765378_59765494_59766630
ENSMUST00000149105.2	chr8	+	2093	11	FSM	ENSMUSG00000002342.18	ENSMUST00000149105.2	2093	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	65.1644841919278	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCAGTGTGGTCTGGCCC	7764	False	NA	24	True	AATAAA	-34	NA	70626952	70635517	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70627057_70629494_70629576_70629890_70629989_70630176_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
ENSMUST00000149122.2	chr7	+	470	2	FSM	ENSMUSG00000030647.9	ENSMUST00000149122.2	470	2	0	0	0	0	multi-exon	FALSE	canonical	3	2630	junction_1	0	706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACTGGCTGCTTGCGTGGC	NA	False	NA	NA	False	NA	NA	NA	97049309	97056287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_97049565_97056072
ENSMUST00000149135.2	chrX	-	563	3	FSM	ENSMUSG00000031389.18	ENSMUST00000149135.2	563	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	16	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCACATGGGGATCTAT	NA	False	NA	NA	False	AAAAAG	-45	NA	72954904	72949990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72950198_72950274_72950495_72954768
ENSMUST00000149143.8	chr7	+	350	3	FSM	ENSMUSG00000046364.15	ENSMUST00000149143.8	350	3	0	0	0	0	multi-exon	FALSE	canonical	3	7451	junction_1	4486.5	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAACTGCTGACCTTATT	NA	False	NA	NA	False	NA	NA	NA	109118405	109119386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_109118430_109118791_109118856_109119124
ENSMUST00000149171.8	chrX	+	762	6	FSM	ENSMUSG00000008682.14	ENSMUST00000149171.8	762	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	4064.78670535122	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGCAGAACAAGGAACATGT	NA	False	NA	NA	False	NA	NA	NA	73314463	73316371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73314481_73314584_73314631_73314966_73315325_73315405_73315514_73315784_73315924_73316277
ENSMUST00000149187.8	chr1	-	2091	12	FSM	ENSMUSG00000053483.16	ENSMUST00000149187.8	2091	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	157.150083551777	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAAGTGATGTTCAT	NA	False	NA	NA	False	AATAAA	-7	NA	171115528	171109531	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171109877_171110070_171110186_171110447_171110556_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113114_171113175_171113922_171114544_171115334
ENSMUST00000149205.2	chr19	+	919	7	FSM	ENSMUSG00000032946.17	ENSMUST00000149205.2	919	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	53.7297765572209	1645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCATCAGCCTAAAACCCT	NA	False	NA	20	True	AATAAA	-22	NA	6458434	6465241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6458601_6458868_6458985_6463114_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
ENSMUST00000149259.8	chr4	+	821	9	FSM	ENSMUSG00000028522.17	ENSMUST00000149259.8	821	9	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	55.8232422472934	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAATGAAAAAGGTGAGTT	2587	False	NA	NA	False	NA	NA	NA	102971661	103000390	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_102971717_102972756_102972858_102975435_102975513_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330
ENSMUST00000149267.8	chr8	+	1000	7	FSM	ENSMUSG00000038005.16	ENSMUST00000149267.8	1000	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	318.3514829032	1194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACGGCTCTTCTAGTGTT	NA	False	NA	15	True	AATAAA	-28	NA	61343478	61360607	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_61343571_61346734_61346895_61349771_61349871_61353117_61353269_61357033_61357122_61358581_61358755_61360370
ENSMUST00000149277.8	chr17	-	1388	12	FSM	ENSMUSG00000024426.18	ENSMUST00000149277.8	1388	12	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	38.3140567174602	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGCTACCGACAAAAAGTG	NA	False	NA	-15	True	AATAAA	-21	NA	36220949	36208503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36208808_36209148_36209243_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
ENSMUST00000149302.2	chr7	+	641	2	FSM	ENSMUSG00000049421.14	ENSMUST00000149302.2	641	2	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTTACATCTGTACTGAA	NA	False	NA	NA	False	NA	NA	NA	29794586	29799543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_29794637_29798952
ENSMUST00000149330.8	chrX	+	479	4	FSM	ENSMUSG00000041718.17	ENSMUST00000149330.8	479	4	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_3	280.483313031077	951	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATCAAAATAAATTCAT	NA	False	NA	40	True	TTTAAA	-31	NA	143100998	143107173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_143101118_143102998_143103058_143105007_143105147_143107011
ENSMUST00000149346.2	chr6	-	486	2	FSM	ENSMUSG00000030127.16	ENSMUST00000149346.2	486	2	0	0	0	0	multi-exon	FALSE	canonical	3	1332	junction_1	0	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGGGTCTGTAAACTTA	NA	False	NA	NA	False	AATAAA	-33	NA	124942475	124941516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124941892_124942364
ENSMUST00000149384.8	chr5	-	1477	8	FSM	ENSMUSG00000029328.16	ENSMUST00000149384.8	1477	8	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_7	409.537668646996	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTGTTCATTCTTTAAGA	NA	False	NA	NA	False	NA	NA	NA	100186754	100183284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
ENSMUST00000149391.8	chrX	+	2746	9	FSM	ENSMUSG00000015291.11	ENSMUST00000149391.8	2746	9	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_6	47.4656125526681	935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGCCTGGCTCTTTAGGT	6217	False	NA	11	True	AATAAA	-12	NA	73348872	73355464	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243
ENSMUST00000149433.2	chrX	+	1383	9	FSM	ENSMUSG00000045103.20	ENSMUST00000149433.2	1383	9	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_8	32.8916307744082	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	84091927	84188017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634
ENSMUST00000149441.8	chr17	+	1701	13	FSM	ENSMUSG00000003199.17	ENSMUST00000149441.8	1701	13	0	0	0	0	multi-exon	FALSE	canonical	3	665	junction_1	98.0428973573416	1359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGAGTACAGTTCATTTC	NA	False	NA	146	True	TTTAAA	-7	NA	56316200	56323790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_56316257_56316329_56316587_56317276_56317514_56317987_56318112_56318617_56318700_56318865_56318963_56319270_56319344_56319415_56319493_56321940_56322110_56322207_56322279_56322470_56322561_56322903_56322997_56323515
ENSMUST00000149472.3	chr4	-	1009	2	FSM	ENSMUSG00000085085.3	ENSMUST00000149472.3	1009	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCCCTTATGACTTACAC	NA	False	NA	-18	True	AATAAA	-16	NA	128951776	128943889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_128944703_128951580
ENSMUST00000149514.8	chrX	+	775	3	FSM	ENSMUSG00000086316.9	ENSMUST00000149514.8	775	3	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	3	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGTGACCCCTTTCTT	NA	False	NA	NA	False	AGTAAA	-20	NA	152506622	152512184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_152506934_152508700_152508838_152511857
ENSMUST00000149540.3	chr7	+	701	3	FSM	ENSMUSG00000044876.16	ENSMUST00000149540.3	701	3	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	5.5	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTCTAGGTGAAGTCTGC	3018	False	NA	NA	False	AATAAA	-12	NA	6175562	6187430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_6175574_6176980_6177101_6186860
ENSMUST00000149553.2	chr5	+	770	3	FSM	ENSMUSG00000029131.15	ENSMUST00000149553.2	770	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	23.5	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCACCACCATGTTGTAT	NA	False	NA	4	True	AATAAA	-12	NA	29959337	29962958	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_29959590_29961231_29961337_29962545
ENSMUST00000149566.2	chr1	-	838	6	FSM	ENSMUSG00000043716.14	ENSMUST00000149566.2	838	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	2771.11529893651	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGGCAACAGGGAAGACC	NA	False	NA	NA	False	AAAAAG	-27	NA	16174451	16172003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174360
ENSMUST00000149595.8	chrX	+	837	6	FSM	ENSMUSG00000043384.16	ENSMUST00000149595.8	837	6	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_5	28.5629130167075	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATAGATTCTTCTCTC	NA	False	NA	NA	False	TTTAAA	-17	NA	134643481	134662739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_134643728_134644311_134644364_134645247_134645325_134649404_134649532_134652693_134652767_134662477
ENSMUST00000149615.8	chr2	-	542	3	FSM	ENSMUSG00000009549.15	ENSMUST00000149615.8	542	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	715	1831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGGTGGTTTGTTTTTCTT	NA	False	NA	-3	True	ATTAAA	-15	NA	118309364	118306331	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_118306789_118307307_118307341_118309312
ENSMUST00000149646.3	chr6	+	806	3	FSM	ENSMUSG00000004285.13	ENSMUST00000149646.3	806	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	932	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTGGTATGGATACG	275	False	NA	37	True	ATTAAA	-19	NA	29468066	29470511	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_29468167_29468965_29469226_29470065
ENSMUST00000149689.2	chr2	-	588	7	FSM	ENSMUSG00000078867.10	ENSMUST00000149689.2	588	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	128.500324253806	1492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	177090113	177079693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_177079803_177080953_177081015_177081219_177081347_177081614_177081652_177085086_177085189_177086489_177086545_177090016
ENSMUST00000149719.8	chr2	-	3303	9	FSM	ENSMUSG00000058835.15	ENSMUST00000149719.8	3303	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	106.193220122567	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGGTTGAAATTATTTC	NA	False	NA	-22	True	AATAAA	-12	NA	22930253	22830097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_22832060_22836587_22836774_22843446_22843621_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
ENSMUST00000149760.8	chr1	+	1040	5	FSM	ENSMUSG00000026349.15	ENSMUST00000149760.8	1040	5	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_4	23.7539470404394	849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127701900	127723537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991
ENSMUST00000149778.2	chr5	+	1475	3	FSM	ENSMUSG00000040532.15	ENSMUST00000149778.2	1475	3	0	0	0	0	multi-exon	FALSE	canonical	3	589	junction_1	28.5	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	10	True	AATAAA	-17	NA	135038559	135041024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_135038972_135039740_135040520_135040740
ENSMUST00000149796.2	chr4	-	1803	8	FSM	ENSMUSG00000029048.4	ENSMUST00000149796.2	1803	8	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_7	582.015218259552	2280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTCGTCTACACGAGTC	NA	False	NA	-13	True	ATTAAA	-22	NA	155170828	155158566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167775_155170661
ENSMUST00000149822.3	chr11	+	600	2	FSM	ENSMUSG00000086859.5	ENSMUST00000149822.3	600	2	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_1	0	6011	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTTCCATTGTTCAAT	875	False	NA	20	True	AATAAA	-16	NA	116967608	116969781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116968029_116969601
ENSMUST00000149837.2	chr4	+	729	2	FSM	ENSMUSG00000028729.16	ENSMUST00000149837.2	729	2	0	0	0	0	multi-exon	FALSE	canonical	3	2534	junction_1	0	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGGTTCTTGGTCGCCGTT	NA	False	NA	NA	False	NA	NA	NA	118478046	118478859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_118478195_118478278
ENSMUST00000149918.2	chr6	-	1966	4	FSM	ENSMUSG00000068335.7	ENSMUST00000149918.2	1966	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	15.121728296285	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAAGGCCTCTGCGTATG	NA	False	NA	-10	True	ATTAAA	-13	NA	83010449	83007920	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_83009397_83009515_83009610_83009747_83010046_83010351
ENSMUST00000149933.8	chr5	-	1197	6	FSM	ENSMUSG00000038126.18	ENSMUST00000149933.8	1197	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	20.5270553173123	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGACTCCTGACTCTTCCC	NA	False	NA	NA	False	AATAAA	-16	NA	124465915	124453251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_124453350_124453435_124453960_124454144_124454235_124458907_124459062_124462936_124463201_124465848
ENSMUST00000149936.2	chr9	+	3158	4	FSM	ENSMUSG00000015656.18	ENSMUST00000149936.2	3158	4	0	0	0	0	multi-exon	FALSE	canonical	3	3928	junction_2	5585.07877195021	2411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAGTTGTCCTGACTGAG	2459	False	NA	9	True	AATAAA	-19	NA	40712571	40716495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_40712645_40713213_40713920_40714034_40714188_40714269
ENSMUST00000149957.2	chr11	-	585	2	FSM	ENSMUSG00000020773.12	ENSMUST00000149957.2	585	2	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_1	0	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCTTCGGAGGCTCAAAG	NA	False	NA	NA	False	NA	NA	NA	115997909	115997034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115997468_115997757
ENSMUST00000149985.8	chrX	+	1883	4	FSM	ENSMUSG00000031207.17	ENSMUST00000149985.8	1883	4	0	0	0	0	multi-exon	FALSE	canonical	3	1220	junction_3	48.6095555306659	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95139662	95197645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129
ENSMUST00000150049.8	chr7	-	759	4	FSM	ENSMUSG00000025724.13	ENSMUST00000150049.8	759	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	482.466809451409	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTCCCTGAATTCTGT	NA	False	NA	-5	True	AATAAA	-18	NA	80575398	80565124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_80565653_80565922_80565981_80572848_80572969_80575345
ENSMUST00000150050.3	chr7	+	2090	3	FSM	ENSMUSG00000074365.14	ENSMUST00000150050.3	2090	3	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_2	3	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGATCTGTGCCTGCTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	15630095	15634223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_15630183_15631328_15631478_15632369
ENSMUST00000150077.2	chr4	+	1559	10	FSM	ENSMUSG00000028745.19	ENSMUST00000150077.2	1559	10	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	758.63675655419	1702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATCGGCGCTGGCTGTAC	NA	False	NA	4	True	NA	NA	NA	138920279	139019125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989348_139007399_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139016171_139016285_139018313
ENSMUST00000150103.3	chr17	+	1022	5	FSM	ENSMUSG00000037805.16	ENSMUST00000150103.3	1022	5	0	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_3	1550.72344004339	26008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCCTTGGTGTGCCTGT	NA	False	NA	-4	True	AATAAA	-15	NA	28547573	28550002	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548497_28549498_28549672_28549803
ENSMUST00000150108.8	chr1	-	662	6	FSM	ENSMUSG00000013593.13	ENSMUST00000150108.8	662	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	600.927150326893	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTAATGTGTCTTTCTT	NA	False	NA	-1	True	ATTAAA	-28	NA	171065097	171062421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065038
ENSMUST00000150126.8	chr2	+	1227	10	FSM	ENSMUSG00000004085.15	ENSMUST00000150126.8	1227	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_9	4.98887651569859	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAAAAATATCTTTTTG	3374	False	NA	NA	False	NA	NA	NA	72116120	72220183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_72116200_72128531_72128725_72185901_72185990_72194971_72195074_72198744_72198811_72202070_72202100_72202214_72202353_72208977_72209065_72214474_72214550_72219813
ENSMUST00000150128.8	chr8	-	793	5	FSM	ENSMUSG00000014633.16	ENSMUST00000150128.8	793	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	168.345440983711	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCTCCCTTTCTTTAAC	NA	False	NA	-5	True	AATAAA	-15	NA	117648186	117616256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_117616599_117620826_117620899_117623078_117623254_117637866_117637974_117648089
ENSMUST00000150137.2	chr17	-	657	5	FSM	ENSMUSG00000036438.15	ENSMUST00000150137.2	657	5	0	0	0	0	multi-exon	FALSE	canonical	3	7049	junction_1	180.22954114129	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGACTCTCAGGTCTACG	NA	False	NA	NA	False	TTTAAA	-37	NA	87754277	87742321	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
ENSMUST00000150165.8	chr2	-	975	4	FSM	ENSMUSG00000026939.13	ENSMUST00000150165.8	975	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	9.10433352249844	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGAGCTCTGAAGCAAT	NA	False	NA	-6	True	AATAAA	-18	NA	25511975	25510115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_25510543_25511077_25511186_25511386_25511471_25511619
ENSMUST00000150204.8	chr4	-	935	7	FSM	ENSMUSG00000033379.14	ENSMUST00000150204.8	935	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	972.524449849748	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCAGTGAGGCTTCTGT	NA	False	NA	-8	True	AATAAA	-14	NA	117744517	117741529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117744366
ENSMUST00000150214.2	chr8	-	601	3	FSM	ENSMUSG00000031537.16	ENSMUST00000150214.2	601	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	54.5	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATTTTATTTTTTGA	NA	False	NA	NA	False	AATAAA	-36	NA	23196541	23192467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_23192890_23196097_23196221_23196485
ENSMUST00000150265.2	chr5	+	550	2	FSM	ENSMUSG00000086494.2	ENSMUST00000150265.2	550	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATACATCTACCCTTTGA	NA	False	NA	NA	False	TTTAAA	-5	NA	148678649	148679949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_148678795_148679544
ENSMUST00000150268.8	chr3	+	1851	15	FSM	ENSMUSG00000027998.12	ENSMUST00000150268.8	1851	15	0	0	0	0	multi-exon	TRUE	canonical	3	670	junction_6	49.0312790627637	2754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGCATGTTGAGGATTG	NA	False	NA	7	True	AATAAA	-40	NA	82962828	82979662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977903_82978044_82978496_82978691_82979417
ENSMUST00000150280.3	chr17	-	995	2	FSM	ENSMUSG00000024177.10	ENSMUST00000150280.3	995	2	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	0	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTGAGAAGTGGGAATCT	NA	False	NA	NA	False	NA	NA	NA	26314459	26312370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26313245_26314338
ENSMUST00000150312.2	chr11	-	696	2	FSM	ENSMUSG00000086474.3	ENSMUST00000150312.2	696	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGATTTTGGTCTTGGT	1414	False	NA	NA	False	NA	NA	NA	79673713	79672804	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_79673383_79673595
ENSMUST00000150318.2	chr8	-	895	6	FSM	ENSMUSG00000032815.17	ENSMUST00000150318.2	895	6	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_3	15.8795465930234	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTGTGCATGTCTCA	NA	False	NA	NA	False	ATTAAA	-16	NA	124045299	124039021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_124039397_124039759_124039856_124039978_124040113_124043101_124043196_124044800_124044911_124045213
ENSMUST00000150350.9	chr7	-	1047	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	0	0	0	0	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	364782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGATGTGTGCTGTGCAGA	NA	False	NA	-1	True	AATAAA	-19	NA	44778185	44774981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ENSMUST00000150353.2	chr19	-	320	3	FSM	ENSMUSG00000024654.9	ENSMUST00000150353.2	320	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	223	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCTAAATGTCTATGCTA	NA	False	NA	NA	False	ATTAAA	-18	NA	9112895	9109822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_9109862_9112087_9112352_9112878
ENSMUST00000150384.3	chr12	+	670	4	FSM	ENSMUSG00000087075.3	ENSMUST00000150384.3	670	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.09120616516523	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTGCTTCTGCTAGTGG	NA	False	NA	NA	False	NA	NA	NA	111373242	111378524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_111373302_111374958_111375046_111376620_111376778_111378157
ENSMUST00000150459.3	chr10	+	1194	6	FSM	ENSMUSG00000087651.4	ENSMUST00000150459.3	1194	6	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	8.16333265278342	1200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGATTTCTTAATTATTT	NA	False	NA	6	True	ATTAAA	-19	NA	83558728	83598626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_83558899_83573772_83573798_83593308_83593345_83593997_83594078_83595456_83595495_83597781
ENSMUST00000150485.2	chr4	+	576	4	FSM	ENSMUSG00000028936.16	ENSMUST00000150485.2	576	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2633.7473092324	26751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAACCGGTGGTTTATC	NA	False	NA	9	True	AATAAA	-8	NA	152411936	152416930	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_152412043_152413716_152413871_152414463_152414586_152416736
ENSMUST00000150497.8	chr7	+	782	4	FSM	ENSMUSG00000035674.14	ENSMUST00000150497.8	782	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	1418.73472581107	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACCCCACAATCTTTTC	262	False	NA	11	True	AATAAA	-13	NA	3620378	3623151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3620407_3620615_3621140_3622428_3622507_3622999
ENSMUST00000150571.2	chr2	+	2151	8	FSM	ENSMUSG00000017999.17	ENSMUST00000150571.2	2151	8	0	0	0	0	multi-exon	FALSE	canonical	3	722	junction_7	28.1497453499193	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATAGTATTATTTCCCAT	NA	False	NA	NA	False	NA	NA	NA	166857229	166867733	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303
ENSMUST00000150576.8	chr9	+	733	4	FSM	ENSMUSG00000048758.15	ENSMUST00000150576.8	733	4	0	0	0	0	multi-exon	FALSE	canonical	3	2142	junction_1	1217.38161642108	162706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTCTGTTGTCATAG	NA	False	NA	3	True	AATAAA	-19	NA	106306652	106308767	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106306776_106307168_106307214_106307506_106307572_106308267
ENSMUST00000150585.8	chr7	+	2554	23	FSM	ENSMUSG00000030534.14	ENSMUST00000150585.8	2554	23	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_6	27.6695375058045	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCTTTGTTTTTT	NA	False	NA	11	True	AATAAA	-15	NA	79919426	79941321	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_79919828_79923976_79924058_79924371_79924434_79925793_79925844_79926145_79926214_79929719_79929782_79932232_79932328_79933175_79933281_79933727_79933825_79934031_79934110_79934289_79934364_79934765_79934853_79934997_79935089_79935303_79935379_79935581_79935647_79935758_79935814_79936855_79936903_79937525_79937659_79938147_79938222_79939729_79939832_79940015_79940092_79940195_79940313_79940862
ENSMUST00000150627.11	chr19	+	1472	6	FSM	ENSMUSG00000024845.20	ENSMUST00000150627.11	1472	6	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_4	186.716255318063	911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAATCTGAGCTCACAGCA	4371	False	NA	NA	False	AATAAA	-30	NA	4175959	4182306	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4177758_4177836_4181227_4181282_4181360
ENSMUST00000150688.2	chr11	-	429	4	FSM	ENSMUSG00000057594.13	ENSMUST00000150688.2	429	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	81.6999932000541	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGACCATAGGGTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	120358259	120356740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120356926_120357479_120357594_120358007_120358067_120358188
ENSMUST00000150739.2	chr11	-	928	5	FSM	ENSMUSG00000020460.16	ENSMUST00000150739.2	928	5	0	0	0	0	multi-exon	FALSE	canonical	3	7569	junction_4	3562.36217277244	3279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACCAGAAGACAAGTAGT	NA	False	NA	-84	True	NA	NA	NA	29497882	29495898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_29496030_29496290_29496423_29496702_29497261_29497680_29497746_29497840
ENSMUST00000150745.9	chr2	+	3627	5	FSM	ENSMUSG00000027405.17	ENSMUST00000150745.9	3627	5	0	0	0	0	multi-exon	FALSE	canonical	3	1993	junction_1	249.795291188605	715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGTATTTTGTTTATT	NA	False	NA	30	True	AATAAA	-19	NA	130116363	130121232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130118095_130118355
ENSMUST00000150749.2	chr1	-	711	2	FSM	ENSMUSG00000087213.3	ENSMUST00000150749.2	711	2	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	0	1321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAACAGTGCTACCTATGT	7927	False	NA	-16	True	AATAAA	-21	NA	64729818	64719029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_64719545_64729622
ENSMUST00000150757.8	chr2	+	1825	4	FSM	ENSMUSG00000027569.16	ENSMUST00000150757.8	1825	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	3.55902608401044	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATCTTGGAAGTTGTATG	NA	False	NA	NA	False	ATTAAA	-20	NA	180224515	180228097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_180224749_180225193_180225316_180226198_180226665_180227093
ENSMUST00000150766.2	chr17	-	1513	8	FSM	ENSMUSG00000034647.16	ENSMUST00000150766.2	1513	8	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	22.2481368171974	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGTTAAAAGAAAATTAAA	NA	False	NA	NA	False	AATACA	-12	NA	66384017	66294039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_66294489_66331070_66331219_66334246_66334390_66338365_66338567_66344487_66344635_66356780_66356929_66359948_66360087_66383878
ENSMUST00000150810.8	chr5	+	1120	4	FSM	ENSMUSG00000029177.10	ENSMUST00000150810.8	1120	4	0	0	0	0	multi-exon	FALSE	canonical	3	1270	junction_1	232.020592955788	2870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTGGCAGTCCCGCCATA	9224	False	NA	40	True	AATAAA	-24	NA	30824278	30831753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_30824458_30829807_30829915_30830325_30830788_30831381
ENSMUST00000150815.6	chr5	-	387	4	FSM	ENSMUSG00000047215.15	ENSMUST00000150815.6	387	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_2	5373.73491055233	1766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548176	65545706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_65545785_65545904_65546023_65547730_65547827_65548081
ENSMUST00000150826.9	chr9	+	2939	8	FSM	ENSMUSG00000034563.17	ENSMUST00000150826.9	2939	8	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_6	12.4638252063927	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACTGCTTTCTGATGTC	NA	False	NA	NA	False	NA	NA	NA	72892859	72921220	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211
ENSMUST00000150835.2	chr2	-	416	2	FSM	ENSMUSG00000027404.17	ENSMUST00000150835.2	416	2	0	0	0	0	multi-exon	FALSE	canonical	3	3369	junction_1	0	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAGTGGAAGAGGTGAGG	NA	False	NA	NA	False	NA	NA	NA	130021254	130018771	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_130019087_130021153
ENSMUST00000150841.2	chr7	+	451	4	FSM	ENSMUSG00000019738.16	ENSMUST00000150841.2	451	4	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_3	51.8609251320834	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGTTTCCCGTGTTTAT	NA	False	NA	15	True	AATAAA	-15	NA	29932027	29932812	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_29932249_29932331_29932407_29932491_29932544_29932709
ENSMUST00000150844.3	chr7	-	3564	9	FSM	ENSMUSG00000030929.18	ENSMUST00000150844.3	3564	9	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	8.7571399440685	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAGATTTGTGTGTTTGA	NA	False	NA	-4	True	AATAAA	-32	NA	119393281	119383053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_119385768_119385961_119386051_119386626_119386709_119386956_119387058_119389456_119389614_119390323_119390452_119391487_119391572_119391653_119391722_119393140
ENSMUST00000150857.8	chr11	+	2571	12	FSM	ENSMUSG00000006127.10	ENSMUST00000150857.8	2571	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	41.3619380270723	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTCGTGTGACTCCTTT	5506	False	NA	21	True	TATAAA	-12	NA	75521880	75539691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_75522024_75523929_75524003_75524288_75524398_75527769_75527887_75528235_75528412_75528970_75529083_75530281_75530392_75536253_75536444_75537611_75537750_75538018_75538103_75538227_75538333_75538477
ENSMUST00000150863.9	chr11	+	3453	27	FSM	ENSMUSG00000020728.18	ENSMUST00000150863.9	3453	27	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_14	12.2793543958426	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTTCTTTTTACATT	NA	False	NA	NA	False	ATTAAA	-18	NA	108316017	108751441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_108316178_108324951_108325066_108328031_108328223_108331249_108331423_108361117_108361209_108362842_108362921_108377418_108377467_108377738_108377817_108389069_108389157_108393891_108393992_108397364_108397484_108399047_108399192_108409504_108409660_108409955_108410086_108410721_108410815_108414144_108414205_108422211_108422292_108461113_108461250_108481829_108481938_108497038_108497222_108555321_108555553_108643403_108643467_108648495_108648646_108699475_108699566_108746608_108746711_108750168_108750234_108751017
ENSMUST00000150876.2	chr2	-	562	5	FSM	ENSMUSG00000039128.14	ENSMUST00000150876.2	562	5	0	0	0	0	multi-exon	FALSE	canonical	3	1033	junction_1	96.4507646418627	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCTCTCAGTTGAGCAAG	NA	False	NA	NA	False	TTTAAA	-5	NA	5849662	5827626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
ENSMUST00000150911.8	chr1	-	960	6	FSM	ENSMUSG00000026049.12	ENSMUST00000150911.8	960	6	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_5	82.045353311446	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACGGTTGGTTAATTTGA	NA	False	NA	NA	False	AATAAA	-1	NA	44141601	44126020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141487
ENSMUST00000150946.8	chr11	+	484	4	FSM	ENSMUSG00000006058.11	ENSMUST00000150946.8	484	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_3	334.70617296701	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3263	False	NA	NA	False	NA	NA	NA	95925776	95930704	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95930527
ENSMUST00000150971.8	chr1	+	877	8	FSM	ENSMUSG00000025903.15	ENSMUST00000150971.8	877	8	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_6	40.2700070696263	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTAAAAATCTGATCGCC	NA	False	NA	NA	False	AATAAA	-34	NA	4878052	4911509	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178
ENSMUST00000151020.8	chrX	+	3316	12	FSM	ENSMUSG00000000881.13	ENSMUST00000151020.8	3316	12	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	11.5078126534158	155	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATGGCTCAGAGGTCTT	699	False	NA	NA	False	AATAAA	-15	NA	99820890	99862014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_99820979_99840291_99840407_99850117_99850295_99850785_99850862_99851658_99851759_99855107_99855150_99856331_99856383_99856942_99857045_99857809_99857983_99858398_99858509_99858813_99858906_99859824
ENSMUST00000151027.2	chr11	-	539	5	FSM	ENSMUSG00000049321.18	ENSMUST00000151027.2	539	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	29.0172362570938	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTTCTTTAATGGTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	50806961	50796816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_50796985_50801262_50801356_50801576_50801704_50803106_50803232_50806935
ENSMUST00000151066.8	chr15	-	704	5	FSM	ENSMUSG00000055762.17	ENSMUST00000151066.8	704	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1645.62410273428	3790	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781155	75767336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75772980_75773102_75781093
ENSMUST00000151078.8	chr2	-	2107	7	FSM	ENSMUSG00000005882.19	ENSMUST00000151078.8	2107	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	152.646286849333	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCTCCTGGAATGGATG	NA	False	NA	-33	True	AATAAA	-18	NA	155771956	155688815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155763554_155763648_155771932
ENSMUST00000151118.2	chr11	-	728	5	FSM	ENSMUSG00000071415.7	ENSMUST00000151118.2	728	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	6071.74712809254	72784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673102	97668863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97672828
ENSMUST00000151120.9	chr7	-	2127	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	0	0	0	0	multi-exon	FALSE	canonical	3	1941	junction_4	107.727593377927	2840	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGTGTGCTCTGTACTGT	8684	False	NA	-2	True	AATAAA	-23	NA	141941775	141929647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
ENSMUST00000151163.2	chr2	+	746	4	FSM	ENSMUSG00000027162.8	ENSMUST00000151163.2	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	366	junction_1	18.4932420089069	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTTGAGAGAATCCCAGG	NA	False	NA	NA	False	NA	NA	NA	109721214	109727083	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580
ENSMUST00000151200.8	chrX	+	1001	5	FSM	ENSMUSG00000025260.11	ENSMUST00000151200.8	1001	5	0	0	0	0	multi-exon	FALSE	canonical	3	1649	junction_4	99.7180399927716	16259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGCAGTCTTGTGTG	NA	False	NA	16	True	AATAAA	-16	NA	150785144	150787438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_150785439_150786356_150786522_150786648_150786778_150786857_150786967_150787134
ENSMUST00000151231.10	chrX	+	1940	6	FSM	ENSMUSG00000046774.18	ENSMUST00000151231.10	1940	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	112.716280989039	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838261	100842248	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841947_100841990_100842072
ENSMUST00000151238.8	chr4	-	600	5	FSM	ENSMUSG00000028470.11	ENSMUST00000151238.8	600	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	305.186316043167	4423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTATCCCTGTCTTAAA	11	True	NA	-5	True	AATAAA	-16	NA	43656443	43654226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_43654423_43654512_43654586_43654715_43654821_43654905_43655047_43656358
ENSMUST00000151242.8	chr10	+	1657	12	FSM	ENSMUSG00000000730.14	ENSMUST00000151242.8	1657	12	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_7	3.67029622512479	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTAGTGTTCTGGTGTGG	5708	False	NA	23	True	AATATA	-15	NA	77885792	77899450	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_77886038_77886431_77886519_77886749_77886795_77887664_77887745_77887825_77887939_77888545_77888718_77889762_77889851_77890805_77890901_77892678_77892755_77893101_77893242_77895480_77895567_77899020
ENSMUST00000151249.2	chr4	+	673	4	FSM	ENSMUSG00000028261.14	ENSMUST00000151249.2	673	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	218.397700435594	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTTGCACATTAGCCCA	56	False	NA	-6	True	AATAAA	-7	NA	24898175	24903485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_24898303_24898572_24898677_24901693_24901782_24903131
ENSMUST00000151254.2	chr7	+	1430	5	FSM	ENSMUSG00000030663.13	ENSMUST00000151254.2	1430	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	766.33690371794	11276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	False	NA	29	True	AATAAA	-20	NA	115692600	115704445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_115692761_115698674_115698759_115701178_115701240_115702429_115702556_115703446
ENSMUST00000151257.2	chr2	+	1734	4	FSM	ENSMUSG00000027132.4	ENSMUST00000151257.2	1734	4	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_1	36.4264860903284	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGTTGT	NA	False	NA	NA	False	NA	NA	NA	112209570	112237863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418
ENSMUST00000151258.8	chr7	-	1440	12	FSM	ENSMUSG00000030760.15	ENSMUST00000151258.8	1440	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	85.8415800151892	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTACTGGCAAAATACC	NA	False	NA	-48	True	ATTAAA	-16	NA	97958735	97865649	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_97866098_97867262_97867309_97873118_97873224_97875605_97875708_97879656_97879821_97893155_97893215_97901096_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
ENSMUST00000151266.8	chr16	+	1086	5	FSM	ENSMUSG00000003531.16	ENSMUST00000151266.8	1086	5	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_3	38.8546972707291	3244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCCTTTCCTAGTGACTCT	NA	False	NA	30	True	AATAAA	-36	NA	17884266	17889227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_17884464_17884559_17884721_17887287_17887389_17887954_17888096_17888741
ENSMUST00000151287.8	chr17	+	2446	12	FSM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	0	0	0	0	multi-exon	FALSE	canonical	3	3235	junction_8	179.622239047203	22871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCCCAAGTGCTGGAATT	NA	False	NA	20	True	NA	NA	NA	13135268	13143954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
ENSMUST00000151296.8	chr1	+	1592	7	FSM	ENSMUSG00000026096.15	ENSMUST00000151296.8	1592	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	65.9858991670864	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCGTGTTTCAAGTGTTT	NA	False	NA	18	True	AATAAA	-38	NA	53352812	53365333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_53353018_53354014_53354259_53357065_53357449_53359101_53359456_53360238_53360370_53362325_53362430_53365162
ENSMUST00000151306.2	chr17	-	764	3	FSM	ENSMUSG00000023944.15	ENSMUST00000151306.2	764	3	0	0	0	0	multi-exon	FALSE	canonical	3	10174	junction_2	18	1357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGGCAGCAGGCTACATT	NA	False	NA	NA	False	NA	NA	NA	45884197	45881943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45882104_45882338_45882838_45884092
ENSMUST00000151338.8	chr1	-	1538	11	FSM	ENSMUSG00000026034.18	ENSMUST00000151338.8	1538	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	69.2961759406679	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463225	58451158	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
ENSMUST00000151374.2	chr4	-	426	3	FSM	ENSMUSG00000085241.8	ENSMUST00000151374.2	426	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	490.5	8085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTGTGATTTAATGTG	NA	False	NA	-10	True	ATTAAA	-14	NA	132080944	132079244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132079555_132079930_132080010_132080907
ENSMUST00000151458.4	chr5	+	2910	24	FSM	ENSMUSG00000042719.18	ENSMUST00000151458.4	2910	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	136.048153934686	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAACTAAAAATTTAAG	NA	False	NA	NA	False	AAAAAG	-13	NA	121536067	121577994	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_121536126_121545255_121545342_121546259_121546399_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121567395_121567525_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890
ENSMUST00000151488.2	chr17	+	1570	8	FSM	ENSMUSG00000071074.10	ENSMUST00000151488.2	1570	8	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_7	7.73542078324622	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGATTGAAGTCTAGACC	2645	False	NA	7	True	ATTAAA	-2	NA	46559070	46562927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562414_46562491
ENSMUST00000151521.2	chr2	+	600	2	FSM	ENSMUSG00000086714.2	ENSMUST00000151521.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGCATGTAGTTTTTTT	5502	False	NA	NA	False	AATACA	-19	NA	26335935	26348007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_26336213_26347684
ENSMUST00000151540.2	chr17	-	490	2	FSM	ENSMUSG00000096549.10	ENSMUST00000151540.2	490	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGTGTGACCATGCACC	NA	False	NA	NA	False	ATTAAA	-16	NA	48005661	48003140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_48003405_48005435
ENSMUST00000151559.2	chr11	-	510	3	FSM	ENSMUSG00000059534.9	ENSMUST00000151559.2	510	3	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_1	31	43140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGGCTTTTGCACGAGTC	NA	False	NA	-8	True	AATAAA	-17	NA	4654334	4651974	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_4652221_4653903_4653990_4654156
ENSMUST00000151624.2	chr9	+	1112	7	FSM	ENSMUSG00000032076.21	ENSMUST00000151624.2	1112	7	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_2	18.6904610251682	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATCAGTTGGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	47441670	47725352	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_47441804_47699268_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070
ENSMUST00000151658.8	chr9	-	2240	11	FSM	ENSMUSG00000039048.16	ENSMUST00000151658.8	2240	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	63.8767563359318	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	35122297	35115503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121235_35121462_35122102
ENSMUST00000151698.8	chr4	+	2600	8	FSM	ENSMUSG00000028581.18	ENSMUST00000151698.8	2600	8	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_4	26.2071808199702	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCATGTGGTTCTTG	NA	False	NA	22	True	AATAAA	-18	NA	130640435	130663452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771
ENSMUST00000151702.8	chrX	+	648	7	FSM	ENSMUSG00000008682.14	ENSMUST00000151702.8	648	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	3469.80780767786	24826	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGTGGTCCTCTGGACAA	NA	False	NA	-98	True	AATATA	-6	NA	73314462	73316631	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73314485_73314584_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
ENSMUST00000151728.2	chr4	-	2238	3	FSM	ENSMUSG00000043962.17	ENSMUST00000151728.2	2238	3	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_2	228	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGTATCCTAAATAACTT	6822	False	NA	NA	False	AGTAAA	-12	NA	126096405	126072566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_126074608_126080227_126080382_126096362
ENSMUST00000151793.8	chr7	-	3302	26	FSM	ENSMUSG00000038644.15	ENSMUST00000151793.8	3302	26	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_5	286.751320833924	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACACGGGACAAGGAATAAA	NA	False	NA	-42	True	NA	NA	NA	44198262	44182209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
ENSMUST00000151837.2	chr4	-	653	3	FSM	ENSMUSG00000043257.16	ENSMUST00000151837.2	653	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	56.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCCTGGCAGGAGCAGAG	NA	False	NA	NA	False	NA	NA	NA	133399958	133396067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_133396269_133397048_133397172_133399629
ENSMUST00000151843.8	chr4	-	3282	17	FSM	ENSMUSG00000029060.18	ENSMUST00000151843.8	3282	17	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_11	49.9677630452875	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTTCCTGTTCCTTGC	9509	False	NA	-5	True	TATAAA	-13	NA	155751566	155739138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743350_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470
ENSMUST00000151871.2	chr5	+	596	2	FSM	ENSMUSG00000041453.13	ENSMUST00000151871.2	596	2	0	0	0	0	multi-exon	FALSE	canonical	3	12138	junction_1	0	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAATAATACTTTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	146770993	146771774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_146771073_146771257
ENSMUST00000151877.2	chr11	+	1047	3	FSM	ENSMUSG00000049811.18	ENSMUST00000151877.2	1047	3	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_2	2	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACCTCAAGACATTCCT	NA	False	NA	8	True	AATAAA	-19	NA	22970555	22973730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_22971134_22971493_22971662_22973429
ENSMUST00000151880.8	chr11	+	1662	16	FSM	ENSMUSG00000020409.11	ENSMUST00000151880.8	1662	16	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	64.5679659136187	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAGAAGAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	43324570	43336212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_43324647_43327180_43327260_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185
ENSMUST00000151908.8	chr7	+	1918	3	FSM	ENSMUSG00000030815.12	ENSMUST00000151908.8	1918	3	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	14	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127172575	127178458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_127172629_127173025_127173139_127176706
ENSMUST00000151917.6	chr5	-	431	2	FSM	ENSMUSG00000047215.15	ENSMUST00000151917.6	431	2	0	0	0	0	multi-exon	FALSE	canonical	3	8565	junction_1	0	1832	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65546257	65545706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_65545785_65545904
ENSMUST00000151966.8	chr11	-	1734	11	FSM	ENSMUSG00000020528.15	ENSMUST00000151966.8	1734	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	65.5872701063248	693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	292	False	NA	-7	True	AATAAA	-22	NA	61652838	61620479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61647020_61647172_61647407_61647504_61652779
ENSMUST00000152016.2	chr11	+	909	4	FSM	ENSMUSG00000001105.16	ENSMUST00000152016.2	909	4	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	104.521130240094	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGCA	NA	False	NA	35	True	AATGAA	-42	NA	78427298	78432310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78427403_78429659_78429789_78430785_78430872_78431720
ENSMUST00000152075.8	chr1	+	1038	9	FSM	ENSMUSG00000026418.17	ENSMUST00000152075.8	1038	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	38.2898077169369	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	7353	False	NA	43	True	ATTAAA	-24	NA	135727158	135738727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_135727235_135730331_135730362_135731019_135731024_135732790_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
ENSMUST00000152098.8	chr4	-	952	6	FSM	ENSMUSG00000055401.15	ENSMUST00000152098.8	952	6	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_5	226.118552976088	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGTAGTAATCGGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	148236597	148230465	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236469
ENSMUST00000152105.8	chr5	+	585	4	FSM	ENSMUSG00000029651.17	ENSMUST00000152105.8	585	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	27.4752413799932	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCCTCCTCTGGA	NA	False	NA	15	True	ATTAAA	-23	NA	148239974	148250270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_148240187_148240292_148240413_148243439_148243538_148250115
ENSMUST00000152115.8	chr11	-	954	5	FSM	ENSMUSG00000020415.17	ENSMUST00000152115.8	954	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3980.59463993761	2131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCATATGTTCAGATTGT	NA	False	NA	-40	True	AATAAA	-6	NA	43316808	43311104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_43311236_43311933_43312085_43313719_43313814_43315545_43315725_43316409
ENSMUST00000152125.8	chr2	-	1046	7	FSM	ENSMUSG00000085385.8	ENSMUST00000152125.8	1046	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	38.7857362097632	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTCAACCCATGAATT	8350	False	NA	3	True	AATAAA	-32	NA	158203439	158197684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_158197962_158199117_158199184_158200124_158200261_158201101_158201353_158202446_158202520_158202862_158202991_158203324
ENSMUST00000152126.8	chr4	+	1519	5	FSM	ENSMUSG00000028797.21	ENSMUST00000152126.8	1519	5	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_2	194.785779768442	1557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAGCTTAGCAAATGT	3196	False	NA	9	True	AATAAA	-9	NA	129494492	129502314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129501248
ENSMUST00000152140.3	chr6	-	610	2	FSM	ENSMUSG00000032641.19	ENSMUST00000152140.3	610	2	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	0	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATCTTCTCTATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	134874888	134873660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_134874177_134874794
ENSMUST00000152141.2	chr2	-	674	3	FSM	ENSMUSG00000027217.14	ENSMUST00000152141.2	674	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	26	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTGCCTGTGTGAGATT	NA	False	NA	NA	False	ATTAAA	-15	NA	93164850	93141607	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_93141967_93142291_93142373_93164616
ENSMUST00000152208.8	chr1	+	1105	10	FSM	ENSMUSG00000026418.17	ENSMUST00000152208.8	1105	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	37.8313345858061	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	7334	False	NA	43	True	ATTAAA	-24	NA	135727139	135738727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_135727235_135727710_135727759_135730331_135730362_135731019_135731024_135732790_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
ENSMUST00000152233.9	chr1	+	2739	13	FSM	ENSMUSG00000026199.18	ENSMUST00000152233.9	2739	13	0	0	0	0	multi-exon	TRUE	canonical	2	42	junction_4	25.5582124222768	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGTGTACTTACAGTC	44	False	NA	19	True	AATAAA	-15	NA	75168803	75176031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75171901_75172243_75172357_75172444_75172593_75172796_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
ENSMUST00000152266.2	chrX	+	553	2	FSM	ENSMUSG00000079435.10	ENSMUST00000152266.2	553	2	0	0	0	0	multi-exon	FALSE	canonical	3	10431	junction_1	0	1347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCTTTGATTGCAGTTG	NA	False	NA	15	True	AATAAA	-14	NA	133487829	133488745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_133488323_133488685
ENSMUST00000152298.2	chr5	+	476	2	FSM	ENSMUSG00000029725.11	ENSMUST00000152298.2	476	2	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_1	0	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777805	137778372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_137778025_137778115
ENSMUST00000152362.7	chr2	-	1579	10	FSM	ENSMUSG00000039449.15	ENSMUST00000152362.7	1579	10	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	16.2305914484172	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTATGGGTCATTGAAT	NA	False	NA	NA	False	NA	NA	NA	4656924	4628838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_4629338_4638243_4638400_4640441_4640514_4640638_4640780_4641958_4642028_4643659_4643807_4648461_4648576_4650379_4650485_4653051_4653130_4656726
ENSMUST00000152374.8	chr2	+	763	5	FSM	ENSMUSG00000026857.10	ENSMUST00000152374.8	763	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	255.383535099661	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGAGTTTCTGCGCCGCTGC	NA	False	NA	NA	False	NA	NA	NA	30697953	30712397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_30698096_30705370_30705511_30709640_30709845_30710460_30710714_30712373
ENSMUST00000152380.8	chr2	+	1573	8	FSM	ENSMUSG00000027326.14	ENSMUST00000152380.8	1573	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	17.907927784951	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAAATAATAGCCAT	7211	False	NA	NA	False	AATAAA	-28	NA	118877599	118899752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_118877705_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603
ENSMUST00000152391.9	chr6	-	1673	10	FSM	ENSMUSG00000039130.19	ENSMUST00000152391.9	1673	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	369.85085415744	866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTGCTGCTAGAGAATTG	12	True	NA	-11	True	AATAAA	-14	NA	30391001	30366382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_30366745_30370263_30370471_30372736_30372950_30373241_30373357_30374763_30374919_30375937_30376066_30381779_30381864_30382535_30382687_30387419_30387532_30390855
ENSMUST00000152407.8	chr17	+	1034	6	FSM	ENSMUSG00000044533.16	ENSMUST00000152407.8	1034	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4131.25825869069	4123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCGGTTGGTGTGTTTG	4243	False	NA	NA	False	NA	NA	NA	24937089	24940694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24937133_24938925_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940596
ENSMUST00000152434.9	chr17	+	1951	9	FSM	ENSMUSG00000025736.16	ENSMUST00000152434.9	1951	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_5	27.2855272992845	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTCTGCTGGGGGAG	NA	False	NA	16	True	AATAAA	-18	NA	26048025	26050741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26048138_26048213_26048313_26048457_26048507_26048579_26048677_26048758_26048828_26048971_26049036_26049112_26049181_26049273_26049409_26049483
ENSMUST00000152441.2	chr2	-	541	3	FSM	ENSMUSG00000062997.7	ENSMUST00000152441.2	541	3	0	0	0	0	multi-exon	FALSE	canonical	3	39700	junction_1	236.5	9260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGATGACAACGACAATAA	NA	False	NA	-48	True	NA	NA	NA	38895055	38891630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_38891778_38894118_38894201_38894743
ENSMUST00000152459.8	chr9	+	1784	12	FSM	ENSMUSG00000032076.21	ENSMUST00000152459.8	1784	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_9	125.413102509234	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTGCTGTTTGACACCT	NA	False	NA	3	True	AAAACA	-21	NA	47441508	47761885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_47441804_47699268_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47740674_47740708_47748014_47748069_47759464_47759597_47761569
ENSMUST00000152463.8	chrX	-	1272	7	FSM	ENSMUSG00000025283.16	ENSMUST00000152463.8	1272	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_4	540.496993516153	8817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGCATTTTTACTAGT	NA	False	NA	-7	True	AATAAA	-24	NA	153999445	153996127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998116_153998227_153998596_153998681_153998780_153998833_153999098
ENSMUST00000152524.2	chr2	-	801	2	FSM	ENSMUSG00000086657.3	ENSMUST00000152524.2	801	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAATGGCATATTATAAT	NA	False	NA	NA	False	AATAAA	-16	NA	14078745	14075142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_14075592_14078393
ENSMUST00000152528.2	chr19	+	1735	5	FSM	ENSMUSG00000024791.11	ENSMUST00000152528.2	1735	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	197.768014350147	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGCTTTTTATT	NA	False	NA	35	True	AATAAA	-20	NA	6135856	6141807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6135886_6136431_6136498_6136581_6136618_6140080_6140555_6140677
ENSMUST00000152580.8	chr2	-	1822	5	FSM	ENSMUSG00000038671.16	ENSMUST00000152580.8	1822	5	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_2	29.3715423496962	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGTGTAGGTATTCAGA	6146	False	NA	NA	False	NA	NA	NA	181007127	181001107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806
ENSMUST00000152595.2	chr7	+	704	2	FSM	ENSMUSG00000087138.2	ENSMUST00000152595.2	704	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGGCTACAGACTGATTT	NA	False	NA	11	True	NA	NA	NA	44636396	44641752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44636795_44641446
ENSMUST00000152608.8	chr2	-	1654	10	FSM	ENSMUSG00000027108.16	ENSMUST00000152608.8	1654	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	135.509008401747	2651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGGTGTGTTTGGGGA	NA	False	NA	-3	True	AATAAA	-16	NA	73044770	72923543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73044629
ENSMUST00000152634.8	chr13	+	2095	12	FSM	ENSMUSG00000021694.19	ENSMUST00000152634.8	2095	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	31.8161038282489	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTTTCCTTTCCTTGT	NA	False	NA	7	True	ATTAAA	-18	NA	108295287	108331519	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108312338_108312441_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
ENSMUST00000152662.2	chr12	+	538	2	FSM	ENSMUSG00000021134.18	ENSMUST00000152662.2	538	2	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_1	0	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80992307	80993622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_80992573_80993349
ENSMUST00000152665.3	chr17	+	901	5	FSM	ENSMUSG00000037805.16	ENSMUST00000152665.3	901	5	0	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_3	1346.05653205948	150142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGCCTTGGTGTGCCTG	NA	False	NA	-5	True	AATAAA	-14	NA	28547559	28550001	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
ENSMUST00000152697.3	chr7	-	1052	5	FSM	ENSMUSG00000070371.12	ENSMUST00000152697.3	1052	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	39.2778563569857	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534691	127531809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127532287_127532542_127532665_127533310_127533453_127533561_127533800_127534618
ENSMUST00000152700.8	chr11	+	854	6	FSM	ENSMUSG00000020485.15	ENSMUST00000152700.8	854	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	256.77351888386	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTACTGAGGCCTGTGCCT	NA	False	NA	8	True	AATAAA	-25	NA	87628377	87634449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_87628495_87628992_87629100_87631330_87631473_87633621_87633678_87633883_87633938_87634071
ENSMUST00000152704.8	chr13	-	888	6	FSM	ENSMUSG00000021660.15	ENSMUST00000152704.8	888	6	0	0	0	0	multi-exon	FALSE	canonical	3	5972	junction_2	361.40138350593	98503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	-17	True	AATAAA	-36	NA	98453514	98446404	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453373
ENSMUST00000152724.2	chr17	+	1443	5	FSM	ENSMUSG00000090115.8	ENSMUST00000152724.2	1443	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	46.8794997840207	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGCTTCTATGAAGATCC	NA	False	NA	6	True	TATAAA	-3	NA	47983644	47991981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_47984344_47985640_47985846_47989768_47989878_47990588_47990644_47991606
ENSMUST00000152730.4	chrX	+	876	3	FSM	ENSMUSG00000050197.6	ENSMUST00000152730.4	876	3	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	2	964	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTTTAATTTTATGTGC	NA	False	NA	2	True	AATAAA	-15	NA	37210095	37218844	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_37210700_37211950_37211997_37218618
ENSMUST00000152739.2	chrX	-	784	2	FSM	ENSMUSG00000031320.10	ENSMUST00000152739.2	784	2	0	0	0	0	multi-exon	FALSE	canonical	3	11043	junction_1	0	1163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGAATCTCTGTTGGGCT	NA	False	NA	NA	False	TTTAAA	-40	NA	101232942	101231232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_101231978_101232903
ENSMUST00000152784.8	chr11	-	686	3	FSM	ENSMUSG00000085175.8	ENSMUST00000152784.8	686	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	9	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTCATTATGTCTTTG	NA	False	NA	4	True	AATAAA	-22	NA	82671868	82670426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_82670762_82670960_82671125_82671681
ENSMUST00000152790.8	chr11	-	714	4	FSM	ENSMUSG00000087165.8	ENSMUST00000152790.8	714	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	7.84573486395988	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTTGTCTCAGTGATT	NA	False	NA	-3	True	NA	NA	NA	57692243	57686324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_57686621_57686851_57687000_57687137_57687224_57692059
ENSMUST00000152804.9	chr18	+	445	3	FSM	ENSMUSG00000046727.14	ENSMUST00000152804.9	445	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	356.5	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGACCAATTCTTTTCT	NA	False	NA	NA	False	AATAAA	-13	NA	36481826	36526423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_36481870_36499567_36499795_36526248
ENSMUST00000152826.3	chrX	-	796	3	FSM	ENSMUSG00000046873.19	ENSMUST00000152826.3	796	3	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	4	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAGCAGAAATTGTCACA	NA	False	NA	NA	False	NA	NA	NA	156381639	156374052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_156374552_156376720_156376870_156381491
ENSMUST00000152868.2	chr16	+	416	2	FSM	ENSMUSG00000046516.11	ENSMUST00000152868.2	416	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAAGAAAATATGCTGAA	NA	False	NA	6	True	ATTAAA	-8	NA	38167357	38173103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_38167658_38172987
ENSMUST00000152871.8	chr8	+	1166	8	FSM	ENSMUSG00000060038.15	ENSMUST00000152871.8	1166	8	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	92.1485048103089	679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCAGTCTGCATCCTTGG	NA	False	NA	17	True	AATAAA	-23	NA	85798424	85801785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85798683_85799080_85799246_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
ENSMUST00000152913.8	chr12	+	1583	12	FSM	ENSMUSG00000021235.14	ENSMUST00000152913.8	1583	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	67.4165538687435	1880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTCTTTTCCTCTT	NA	False	NA	13	True	AATAAA	-13	NA	84408803	84420566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418177_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
ENSMUST00000152918.8	chr7	+	628	4	FSM	ENSMUSG00000037563.16	ENSMUST00000152918.8	628	4	0	0	0	0	multi-exon	FALSE	canonical	3	20184	junction_3	558.517283130572	21589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050187	28052121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28050277_28050416_28050519_28051601_28051836_28051918
ENSMUST00000152936.8	chr19	-	604	4	FSM	ENSMUSG00000016495.13	ENSMUST00000152936.8	604	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	25.1042271783503	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAAATTTCTCGTGTGTA	NA	False	NA	-77	True	AATAAA	-43	NA	29339273	29326076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_29326406_29335716_29335804_29338216_29338328_29339196
ENSMUST00000152943.8	chr4	-	437	3	FSM	ENSMUSG00000085241.8	ENSMUST00000152943.8	437	3	0	0	0	0	multi-exon	FALSE	canonical	3	959	junction_1	21	12965	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGTGATTTAATGTGT	NA	False	NA	-9	True	ATTAAA	-15	NA	132080997	132079243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132079555_132079973_132080010_132080907
ENSMUST00000152976.2	chr5	+	694	3	FSM	ENSMUSG00000067274.11	ENSMUST00000152976.2	694	3	0	0	0	0	multi-exon	FALSE	canonical	3	7201	junction_2	8997.5	1372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTCCAGAGGCACCATTG	NA	False	NA	NA	False	NA	NA	NA	115697636	115699276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_115697948_115698799_115699064_115699157
ENSMUST00000152979.8	chr11	+	3976	23	FSM	ENSMUSG00000020898.19	ENSMUST00000152979.8	3976	23	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	94.2205957376466	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTTCATCTCTGAGGT	5261	False	NA	21	True	AATAAA	-21	NA	68906911	68927299	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_68906992_68911855_68912020_68913218_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922236_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
ENSMUST00000152982.3	chr17	-	822	3	FSM	ENSMUSG00000052146.17	ENSMUST00000152982.3	822	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	3108	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTACTGATTCTGATTGCCC	NA	False	NA	NA	False	NA	NA	NA	27854218	27853046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27853218_27853299_27853450_27853717
ENSMUST00000152993.8	chr4	-	462	2	FSM	ENSMUSG00000054428.13	ENSMUST00000152993.8	462	2	0	0	0	0	multi-exon	FALSE	canonical	3	8437	junction_1	0	1046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATGCCTTCTACTGTCT	9412	False	NA	-20	True	AATAAA	-19	NA	132260799	132257865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_132258135_132260606
ENSMUST00000153008.8	chr2	+	765	4	FSM	ENSMUSG00000015092.10	ENSMUST00000153008.8	765	4	0	0	0	0	multi-exon	FALSE	canonical	3	2578	junction_3	170.755836080515	665	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTCTTCTCATCTTTT	NA	False	NA	NA	False	NA	NA	NA	25447882	25451373	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_25448042_25450162_25450215_25450551_25450713_25450980
ENSMUST00000153056.8	chr12	+	2720	7	FSM	ENSMUSG00000021134.18	ENSMUST00000153056.8	2720	7	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_1	608.09467921442	2076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992305	80997277	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_80992443_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80995943_80996267_80996379_80996493
ENSMUST00000153065.8	chr13	-	2502	8	FSM	ENSMUSG00000025871.19	ENSMUST00000153065.8	2502	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_6	177.014469603419	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGGTCTGTCTTGTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	54713116	54699035	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54712327_54712435_54712994
ENSMUST00000153073.8	chr11	-	2061	10	FSM	ENSMUSG00000007646.14	ENSMUST00000153073.8	2061	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	58.9867112048589	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAATAGAAATAAAA	NA	False	NA	-38	True	NA	NA	NA	87295332	87269416	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_87270314_87271657_87271719_87279073_87279154_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
ENSMUST00000153110.8	chr7	-	1016	5	FSM	ENSMUSG00000070371.12	ENSMUST00000153110.8	1016	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	32.1820990614348	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534651	127531809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127532287_127532542_127532665_127532738_127533005_127533681_127533800_127534618
ENSMUST00000153146.9	chr8	+	801	6	FSM	ENSMUSG00000014856.13	ENSMUST00000153146.9	801	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	152.856010676715	4273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGCCGTGTGGGTGATGA	259	False	NA	16	True	AATAAA	-18	NA	106052993	106055687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055117_106055239_106055325_106055403
ENSMUST00000153157.8	chr11	-	989	4	FSM	ENSMUSG00000020925.17	ENSMUST00000153157.8	989	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	267.304237818175	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGCTTCTTGTTGGGT	NA	False	NA	NA	False	NA	NA	NA	102588560	102579144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102579686_102581026_102581163_102582936_102583025_102588336
ENSMUST00000153185.8	chr11	+	1578	6	FSM	ENSMUSG00000001313.13	ENSMUST00000153185.8	1578	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	71.7568115233669	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGACTTAGTTTTGTT	7809	False	NA	21	True	AATAAA	-21	NA	101355824	101362679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101355971_101356456_101356760_101359758_101359847_101360838_101360949_101361543_101361679_101361883
ENSMUST00000153187.8	chr16	-	2922	11	FSM	ENSMUSG00000034064.15	ENSMUST00000153187.8	2922	11	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_10	237.918389369128	1153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCATTGGCTCCTCATTT	6266	False	NA	-4	True	NA	NA	NA	38370584	38345501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
ENSMUST00000153193.3	chr18	+	821	7	FSM	ENSMUSG00000024516.14	ENSMUST00000153193.3	821	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	174.951818764164	1885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGCTTCCTTTTGTGGCC	NA	False	NA	NA	False	AATAAA	-16	NA	65933642	65950731	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_65933783_65934521_65934564_65942515_65942626_65945735_65945886_65947908_65948029_65949891_65949950_65950530
ENSMUST00000153275.2	chr16	-	356	2	FSM	ENSMUSG00000033918.17	ENSMUST00000153275.2	356	2	0	0	0	0	multi-exon	FALSE	canonical	3	1878	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGGCCACTGCTATTGTA	NA	False	NA	NA	False	NA	NA	NA	20121111	20116873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_20117077_20120958
ENSMUST00000153297.2	chr12	-	944	2	FSM	ENSMUSG00000044062.8	ENSMUST00000153297.2	944	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATGGATATTTTATTTT	NA	False	NA	NA	False	ATTAAA	-26	NA	80739240	80733143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_80733782_80738934
ENSMUST00000153302.8	chr5	-	1582	9	FSM	ENSMUSG00000035234.19	ENSMUST00000153302.8	1582	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	75.0232255704858	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTAATATCTTATTTTT	NA	False	NA	-3	True	AATAAA	-19	NA	100968806	100953057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_100953318_100953763_100954356_100954644_100954757_100957419_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100968696
ENSMUST00000153337.2	chr18	-	1513	4	FSM	ENSMUSG00000051469.15	ENSMUST00000153337.2	1513	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	83.8212383587835	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTGTGAAGTTTATA	NA	False	NA	NA	False	TTTAAA	-24	NA	24153377	24146981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153274
ENSMUST00000153341.8	chr8	+	960	3	FSM	ENSMUSG00000065952.14	ENSMUST00000153341.8	960	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	2.5	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATCTGTTTATTTAT	NA	False	NA	24	True	ATTAAA	-44	NA	3617994	3628597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_3618097_3623120_3623222_3627840
ENSMUST00000153353.9	chr2	+	1204	4	FSM	ENSMUSG00000027405.17	ENSMUST00000153353.9	1204	4	0	0	0	0	multi-exon	FALSE	canonical	3	1876	junction_1	235.799820940465	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATGTGTGTATTTTGT	NA	False	NA	25	True	AATAAA	-14	NA	130119008	130121227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_130119545_130119768_130119891_130120075_130120211_130120816
ENSMUST00000153360.8	chr18	-	2498	5	FSM	ENSMUSG00000047989.12	ENSMUST00000153360.8	2498	5	0	0	0	0	multi-exon	FALSE	canonical	3	634	junction_3	55.0789206502814	3098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGGGGTGTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	24255010	24237813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_24239716_24244771_24244840_24245717_24245830_24247133_24247245_24254705
ENSMUST00000153389.8	chr1	+	1024	6	FSM	ENSMUSG00000062590.14	ENSMUST00000153389.8	1024	6	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_5	12.3870900537616	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAACGGGAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	86082507	86098053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631
ENSMUST00000153393.3	chr7	-	397	2	FSM	ENSMUSG00000030615.13	ENSMUST00000153393.3	397	2	0	0	0	0	multi-exon	FALSE	canonical	3	739	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCTTTCCATTCAGCTT	1721	False	NA	NA	False	NA	NA	NA	90106361	90104412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_90104728_90106279
ENSMUST00000153395.8	chr11	-	1564	11	FSM	ENSMUSG00000018677.10	ENSMUST00000153395.8	1564	11	0	0	0	0	multi-exon	FALSE	canonical	3	4398	junction_2	183.250211459632	5291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGCTGTAGTGTC	7726	False	NA	95	True	NA	NA	NA	102298332	102293970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102294362_102294458_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
ENSMUST00000153455.8	chr15	-	1252	5	FSM	ENSMUSG00000005360.15	ENSMUST00000153455.8	1252	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	23.8156986040721	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAAATGCATAACAT	NA	False	NA	NA	False	NA	NA	NA	8739900	8710004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_8710661_8717194_8717297_8717771_8717910_8738045_8738324_8739822
ENSMUST00000153470.9	chr7	-	2224	5	FSM	ENSMUSG00000062797.15	ENSMUST00000153470.9	2224	5	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_3	227.142026054185	12884	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGTACCTTGACAGTGG	NA	False	NA	-14	True	AATAAA	-17	NA	89590412	89566736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89584934_89585173_89590176
ENSMUST00000153474.9	chr4	+	606	5	FSM	ENSMUSG00000086290.10	ENSMUST00000153474.9	606	5	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	27.427176303805	7260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035988	132038335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132036219_132037148_132037215_132037461_132037527_132037761_132037816_132038144
ENSMUST00000153510.9	chr11	+	1887	12	FSM	ENSMUSG00000037243.18	ENSMUST00000153510.9	1887	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	49.3946830209872	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTGGTGCTACAGATAT	7673	False	NA	14	True	AATAAA	-21	NA	58197894	58205439	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_58198083_58198399_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200492_58200779_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
ENSMUST00000153512.2	chr15	-	738	3	FSM	ENSMUSG00000014313.16	ENSMUST00000153512.2	738	3	0	0	0	0	multi-exon	FALSE	canonical	3	8821	junction_1	415.5	101886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTCTTTGCTTGGTTAT	403	False	NA	-5	True	AATAAA	-18	NA	35937791	35932125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_35932244_35935430_35935560_35937300
ENSMUST00000153514.8	chr2	-	2127	18	FSM	ENSMUSG00000027620.17	ENSMUST00000153514.8	2127	18	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_15	799.195928097666	2229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	False	NA	0	True	AATAAA	-15	NA	156022104	155989859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156016016_156016089_156019255_156019306_156021096_156021161_156021806
ENSMUST00000153532.8	chr11	-	1755	9	FSM	ENSMUSG00000025138.15	ENSMUST00000153532.8	1755	9	0	0	0	0	multi-exon	FALSE	canonical	2	54	junction_8	11.6344047978399	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTCCCGATGACTGT	NA	False	NA	-1	True	ATTAAA	-15	NA	120515795	120509197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120509876_120510988_120511096_120511249_120511331_120511472_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
ENSMUST00000153593.8	chr4	+	868	7	FSM	ENSMUSG00000028608.16	ENSMUST00000153593.8	868	7	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_1	314.336735577204	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTGAAGGTGGTCT	NA	False	NA	14	True	AATAAA	-19	NA	107747436	107754315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_107747747_107748661_107748719_107749156_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
ENSMUST00000153609.8	chr7	+	1248	9	FSM	ENSMUSG00000030512.14	ENSMUST00000153609.8	1248	9	0	0	0	0	multi-exon	FALSE	canonical	3	2395	junction_6	274.913622798144	20823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGCTGTGTATCTGCA	NA	False	NA	23	True	AATAAA	-23	NA	65710085	65724335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65719275_65719866_65719947_65720337_65720414_65720979_65721074_65724069
ENSMUST00000153627.8	chr12	+	2036	16	FSM	ENSMUSG00000021177.17	ENSMUST00000153627.8	2036	16	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_1	45.8998910674089	767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTACAGGCCTGGAATGA	NA	False	NA	19	True	ATTAAA	-19	NA	99850795	99921478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
ENSMUST00000153655.8	chr2	-	2484	11	FSM	ENSMUSG00000039671.19	ENSMUST00000153655.8	2484	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_10	203.909293559661	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAGAATGGTTGTGTTTA	NA	False	NA	33	True	AATAGA	-13	NA	165717697	165669048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165694787_165694800_165717624
ENSMUST00000153674.8	chr8	-	884	5	FSM	ENSMUSG00000050914.17	ENSMUST00000153674.8	884	5	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_4	25.936219847927	719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTAAAATTTCTGTGCAT	NA	False	NA	NA	False	ATTAAA	-13	NA	46452904	46449947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452687
ENSMUST00000153748.2	chr8	+	4659	5	FSM	ENSMUSG00000071796.14	ENSMUST00000153748.2	4659	5	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	481.210452920549	1034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAAGTAGATGTCTT	7188	False	NA	NA	False	AATAAA	-5	NA	20143847	20172994	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_20143957_20157802_20158000_20163109_20163409_20167037_20167158_20169060
ENSMUST00000153766.8	chr4	+	1377	9	FSM	ENSMUSG00000028708.17	ENSMUST00000153766.8	1377	9	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	26.830195209875	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGCTTATAGCGTGTC	NA	False	NA	NA	False	TTTAAA	-12	NA	115696419	115731067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407
ENSMUST00000153819.2	chr13	+	1098	4	FSM	ENSMUSG00000037966.16	ENSMUST00000153819.2	1098	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	176.942551882431	1134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGGTTCCATGTGCCA	2185	False	NA	13	True	AATAAA	-15	NA	49343771	49349720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_49343836_49347211_49347441_49348369_49348534_49349079
ENSMUST00000153892.2	chr11	-	1051	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	0	0	0	0	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	10612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115427102	115413927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
ENSMUST00000153930.8	chr15	-	799	9	FSM	ENSMUSG00000022487.15	ENSMUST00000153930.8	799	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	29.634228520412	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTAAACTGTCTGTGACTT	8483	False	NA	-24	True	NA	NA	NA	103338776	103310909	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338603
ENSMUST00000153970.8	chr9	+	1979	7	FSM	ENSMUSG00000032309.16	ENSMUST00000153970.8	1979	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	461.943599250914	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGGTGTTGTAATTATTG	NA	False	NA	9	True	AATAAA	-16	NA	55116269	55131715	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_55116403_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
ENSMUST00000154030.8	chr2	-	2007	5	FSM	ENSMUSG00000085385.8	ENSMUST00000154030.8	2007	5	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	13.2193040664023	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTCAACCCATGAATT	8347	False	NA	3	True	AATAAA	-32	NA	158203442	158197684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_158197962_158199117_158199184_158201101_158202520_158202862_158202991_158203324
ENSMUST00000154060.2	chr5	-	594	3	FSM	ENSMUSG00000085042.9	ENSMUST00000154060.2	594	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	17	407	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGGACCCTCTCCGTGC	NA	False	NA	-8	True	ATTAAA	-21	NA	135042008	135040975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_135041405_135041547_135041643_135041938
ENSMUST00000154080.2	chr11	+	964	3	FSM	ENSMUSG00000002064.11	ENSMUST00000154080.2	964	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	3	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTCATTTATTAAG	NA	False	NA	19	True	NA	NA	NA	78141246	78146322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_78141372_78141841_78142039_78145680
ENSMUST00000154111.8	chr2	-	2293	9	FSM	ENSMUSG00000078919.11	ENSMUST00000154111.8	2293	9	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_3	8.66656650583148	8683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATAATGTTATCGAATTGT	NA	False	NA	NA	False	ATTAAA	-27	NA	168072299	168050967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
ENSMUST00000154132.8	chr10	-	1974	8	FSM	ENSMUSG00000019868.17	ENSMUST00000154132.8	1974	8	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_6	66.3663302881692	3189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCTGGAAATCCAGTACT	NA	False	NA	NA	False	AATAAA	-22	NA	14581304	14530498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_14531590_14536809_14536897_14543675_14543853_14551677_14551787_14559807_14559884_14560624_14560753_14563357_14563453_14581093
ENSMUST00000154143.8	chr7	-	1158	4	FSM	ENSMUSG00000002608.9	ENSMUST00000154143.8	1158	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	5.43650214343336	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACGCAGTGTTGACGAA	NA	False	NA	NA	False	NA	NA	NA	25418428	25413558	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_25413908_25414175_25414446_25415159_25415613_25418342
ENSMUST00000154169.4	chr5	-	3241	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCTCAGTCTGCTAATCT	NA	False	NA	NA	False	NA	NA	NA	64126240	64066239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
ENSMUST00000154179.2	chr2	-	599	2	FSM	ENSMUSG00000076437.12	ENSMUST00000154179.2	599	2	0	0	0	0	multi-exon	FALSE	canonical	3	2216	junction_1	0	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGAACGTCTCCTTACCA	390	False	NA	NA	False	NA	NA	NA	84501020	84500293	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84500461_84500588
ENSMUST00000154194.2	chr4	+	535	2	FSM	ENSMUSG00000085614.2	ENSMUST00000154194.2	535	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCTTGCTTCAGAACAA	662	False	NA	NA	False	AATAAA	-15	NA	11966564	11994280	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_11966684_11993864
ENSMUST00000154207.8	chr9	-	859	5	FSM	ENSMUSG00000037742.15	ENSMUST00000154207.8	859	5	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_4	5371.55305172536	4032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCAGGATGTCTATAAAAT	NA	False	NA	NA	False	NA	NA	NA	78396433	78386930	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78396355
ENSMUST00000154219.8	chr3	+	1945	13	FSM	ENSMUSG00000027810.15	ENSMUST00000154219.8	1945	13	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_3	220.750408958977	1199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	False	NA	5	True	AATAAA	-16	NA	58433476	58464922	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_58433508_58438507_58438578_58444954_58445030_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
ENSMUST00000154236.2	chr17	+	1884	6	FSM	ENSMUSG00000038880.14	ENSMUST00000154236.2	1884	6	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_5	226.408480406543	5394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGCGCTGGTGAAGTTTC	NA	False	NA	16	True	AATAAA	-15	NA	25114096	25116476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25114463_25114635_25114679_25114761_25115733_25115825_25115928_25116001_25116115_25116187
ENSMUST00000154237.8	chr1	+	2420	9	FSM	ENSMUSG00000026456.19	ENSMUST00000154237.8	2420	9	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_5	130.869925880624	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATCATTGTCGTCGTGTC	7971	False	NA	39	True	AATAAA	-27	NA	134333518	134339474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134335554_134336226_134337338_134337425_134338230_134338331_134338644
ENSMUST00000154241.8	chr5	-	1724	8	FSM	ENSMUSG00000107283.4	ENSMUST00000154241.8	1724	8	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_7	57.209960599853	1104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCTTTAGCAGTTTTG	NA	False	NA	NA	False	TTTAAA	-13	NA	31311595	31297997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
ENSMUST00000154279.3	chr4	+	2942	5	FSM	ENSMUSG00000087166.10	ENSMUST00000154279.3	2942	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	184.711937892492	1344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTTACTTAATGTCCCT	NA	False	NA	32	True	NA	NA	NA	98614984	98626717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682_98624985_98625182
ENSMUST00000154356.8	chr9	+	3548	15	FSM	ENSMUSG00000006932.18	ENSMUST00000154356.8	3548	15	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_10	170.570232108749	13651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTGTCATTTTGTTTGT	NA	False	NA	26	True	ATTAAA	-15	NA	120762540	120789572	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_120762705_120779238_120779300_120779587_120779816_120779959_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785043_120786175_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
ENSMUST00000154469.8	chr5	+	1473	5	FSM	ENSMUSG00000040532.15	ENSMUST00000154469.8	1473	5	0	0	0	0	multi-exon	FALSE	canonical	3	552	junction_3	34.8926926447358	2175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	10	True	AATAAA	-17	NA	135038309	135041024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
ENSMUST00000154477.8	chr15	-	1905	8	FSM	ENSMUSG00000022552.17	ENSMUST00000154477.8	1905	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	64.7960694197179	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGTGTTCTGTTCTTGG	8177	False	NA	-4	True	ATTAAA	-15	NA	76235247	76231240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76231386_76231458_76231588_76231681_76231795_76231863_76232008_76232095_76232205_76232285_76232423_76232500_76232636_76234254
ENSMUST00000154490.8	chr2	+	860	3	FSM	ENSMUSG00000019715.15	ENSMUST00000154490.8	860	3	0	0	0	0	multi-exon	FALSE	canonical	3	530	junction_2	57.5	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGATAGGAAGACAAAAAA	NA	False	NA	NA	False	AATAAA	-41	NA	29825439	29828967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_29825611_29826021_29826250_29828506
ENSMUST00000154533.8	chr14	+	762	4	FSM	ENSMUSG00000060126.15	ENSMUST00000154533.8	762	4	0	0	0	0	multi-exon	FALSE	canonical	3	5160	junction_2	155.938021876214	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACATGGCTAGCATATGTG	1100	False	NA	NA	False	NA	NA	NA	76082794	76084528	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133
ENSMUST00000154550.8	chr8	+	1000	8	FSM	ENSMUSG00000002395.15	ENSMUST00000154550.8	1000	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	297.542656862947	3141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819860	71822376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71820014_71820141_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
ENSMUST00000154553.2	chr17	+	1049	8	FSM	ENSMUSG00000073468.13	ENSMUST00000154553.2	1049	8	0	0	0	0	multi-exon	FALSE	canonical	3	730	junction_5	48.6457414710199	5305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCTGGATCAACTGTA	2923	False	NA	NA	False	AATAAA	-19	NA	8529933	8546274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_8530118_8537675_8537763_8538250_8538334_8539431_8539514_8540631_8540668_8542108_8542168_8543265_8543296_8545786
ENSMUST00000154593.2	chr8	+	774	4	FSM	ENSMUSG00000031671.12	ENSMUST00000154593.2	774	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	187.450141519167	570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGAAAAATAGCTAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	96443636	96445499	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_96443691_96444548_96444730_96444820_96444964_96445103
ENSMUST00000154596.2	chr2	+	826	3	FSM	ENSMUSG00000027602.10	ENSMUST00000154596.2	826	3	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_2	23	3833	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCCTTTGCCTCCAGCTG	NA	False	NA	6	True	AATAAA	-18	NA	155118808	155119988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_155118934_155119017_155119125_155119394
ENSMUST00000154615.3	chr13	+	487	2	FSM	ENSMUSG00000085896.3	ENSMUST00000154615.3	487	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGGTGAGAGTCAACTT	NA	False	NA	NA	False	AATAAA	-23	NA	55061047	55062292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_55061126_55061883
ENSMUST00000154655.2	chr6	-	583	6	FSM	ENSMUSG00000001642.19	ENSMUST00000154655.2	583	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_5	538.943188100564	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACAATCGGTGTCTCC	NA	False	NA	NA	False	NA	NA	NA	34294394	34287539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_34287571_34287859_34287938_34288856_34288974_34289574_34289743_34293515_34293585_34294274
ENSMUST00000154691.8	chr9	-	2212	11	FSM	ENSMUSG00000039048.16	ENSMUST00000154691.8	2212	11	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_9	80.1217199016596	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCTCTTGAGAGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	35122232	35115501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120804_35121240_35121462_35122040
ENSMUST00000154712.2	chr4	+	788	6	FSM	ENSMUSG00000028902.5	ENSMUST00000154712.2	788	6	0	0	0	0	multi-exon	FALSE	canonical	3	1208	junction_5	48.8630739925355	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAGAAAAAAAAAGAA	NA	False	NA	NA	False	AAGAAA	-33	NA	124608675	124612520	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120
ENSMUST00000154779.8	chr7	-	709	6	FSM	ENSMUSG00000035642.17	ENSMUST00000154779.8	709	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	45.2566017283667	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCCACATCAGCCTCCAC	NA	False	NA	-7	True	AATAAA	-31	NA	97228649	97199754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97218893_97218982_97224794_97224899_97228572
ENSMUST00000154781.8	chr5	+	955	4	FSM	ENSMUSG00000079109.12	ENSMUST00000154781.8	955	4	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	13.490737563232	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAACAAAGCA	NA	False	NA	NA	False	AATGAA	-5	NA	143846842	143851109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_143846898_143848738_143848879_143850219_143850307_143850436
ENSMUST00000154785.2	chr19	+	604	4	FSM	ENSMUSG00000024829.13	ENSMUST00000154785.2	604	4	0	0	0	0	multi-exon	FALSE	canonical	3	1715	junction_3	65.0589476295664	1074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGAGCCTGTGACTTGCT	NA	False	NA	7	True	NA	NA	NA	3336810	3341195	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_3337039_3337702_3337756_3338983_3339088_3340976
ENSMUST00000154803.2	chr8	-	675	2	FSM	ENSMUSG00000031750.16	ENSMUST00000154803.2	675	2	0	0	0	0	multi-exon	TRUE	canonical	3	45	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGATGGTGAACCTGGA	NA	False	NA	-12	True	ATTAAA	-27	NA	111469330	111468460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_111469081_111469275
ENSMUST00000154807.2	chr5	+	593	2	FSM	ENSMUSG00000046079.17	ENSMUST00000154807.2	593	2	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_1	0	1650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGACAACGAATGACGTTGC	3370	False	NA	NA	False	NA	NA	NA	105879928	105959870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_105880241_105959589
ENSMUST00000154837.8	chr4	+	734	5	FSM	ENSMUSG00000037266.19	ENSMUST00000154837.8	734	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	392.039219976777	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134651770	134654683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_134651794_134652603_134652744_134653087_134653133_134654045_134654130_134654241
ENSMUST00000154853.8	chr7	-	883	5	FSM	ENSMUSG00000035642.17	ENSMUST00000154853.8	883	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	23.5902522241709	1208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAGTTGAGAGCATTAG	NA	False	NA	NA	False	AATAAA	-22	NA	97228703	97199546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97224794_97224899_97228572
ENSMUST00000154869.4	chr3	+	819	8	FSM	ENSMUSG00000028167.16	ENSMUST00000154869.4	819	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	22.5479081793701	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGAGTAGTTTTTTTTCT	NA	False	NA	18	True	AATAAA	-28	NA	134994418	135010184	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_134994449_134995315_134995413_134996754_134996864_135000988_135001050_135002580_135002695_135006434_135006494_135007322_135007416_135009928
ENSMUST00000154891.8	chr7	+	1722	9	FSM	ENSMUSG00000030815.12	ENSMUST00000154891.8	1722	9	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	40.5768945953236	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCATGTCTGCTGTCTA	NA	False	NA	24	True	AATAAA	-25	NA	127172754	127182477	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_127173139_127176706_127176819_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
ENSMUST00000154899.7	chr2	-	1984	12	FSM	ENSMUSG00000026767.13	ENSMUST00000154899.7	1984	12	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_9	46.6171323098428	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	12424259	12352073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12410670_12410732_12414811_12414892_12423969
ENSMUST00000154909.2	chr7	-	959	5	FSM	ENSMUSG00000030751.19	ENSMUST00000154909.2	959	5	0	0	0	0	multi-exon	FALSE	canonical	3	2548	junction_1	245.338923736125	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	113875289	113869723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
ENSMUST00000154932.3	chr5	-	779	5	FSM	ENSMUSG00000025537.13	ENSMUST00000154932.3	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	3.20156211871642	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGCCATCCTGGCTATGGG	NA	False	NA	NA	False	NA	NA	NA	129902946	129895070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_129895128_129895702_129895867_129898301_129898368_129902056_129902112_129902509
ENSMUST00000154939.2	chr4	+	266	2	FSM	ENSMUSG00000066009.9	ENSMUST00000154939.2	266	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	2088	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	146033867	146035167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_146034017_146035050
ENSMUST00000154972.9	chr11	-	1049	5	FSM	ENSMUSG00000014195.17	ENSMUST00000154972.9	1049	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	1222.31570696772	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGGCTCCTTTTGTTTTG	5930	False	NA	NA	False	NA	NA	NA	100510446	100488252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100488881_100489440_100489555_100490010_100490136_100492553_100492643_100510353
ENSMUST00000154993.2	chrX	+	1035	2	FSM	ENSMUSG00000084990.2	ENSMUST00000154993.2	1035	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCTCCCCTCCCCCAC	NA	False	NA	NA	False	NA	NA	NA	36078423	36080853	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_36078984_36080378
ENSMUST00000155008.2	chr9	+	481	1	FSM	ENSMUSG00000066443.6	ENSMUST00000155008.2	481	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3844	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATGTACACAAAGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	88272889	88273370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_88272900_88273400
ENSMUST00000155028.2	chrX	-	558	3	FSM	ENSMUSG00000031320.10	ENSMUST00000155028.2	558	3	0	0	0	0	multi-exon	FALSE	canonical	3	16896	junction_1	54.5	1133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGAGAGACAAGAGGCTT	NA	False	NA	NA	False	NA	NA	NA	101230343	101228679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_101228738_101229108_101229267_101230001
ENSMUST00000155037.4	chr6	+	478	3	FSM	ENSMUSG00000029629.18	ENSMUST00000155037.4	478	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	44	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAGACAAACAGTTAATTAA	35	False	NA	NA	False	AGTAAA	-41	NA	11907807	11933409	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_11908017_11926725_11926837_11933251
ENSMUST00000155071.9	chr17	-	712	5	FSM	ENSMUSG00000052146.17	ENSMUST00000155071.9	712	5	0	0	0	0	multi-exon	FALSE	canonical	3	4719	junction_4	780.063899626178	3565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGACCCGAAACAGAATTG	NA	False	NA	NA	False	NA	NA	NA	27854202	27849942	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27850230_27851252_27851331_27853045_27853218_27853299_27853450_27854177
ENSMUST00000155116.2	chr15	-	593	5	FSM	ENSMUSG00000022283.16	ENSMUST00000155116.2	593	5	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_1	2707.45926792999	1561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAACAACAAAAAAATACA	9587	False	NA	NA	False	NA	NA	NA	36598263	36596150	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_36596344_36596762_36596900_36597207_36597339_36597700_36597786_36598216
ENSMUST00000155176.8	chr11	+	594	6	FSM	ENSMUSG00000001039.13	ENSMUST00000155176.8	594	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	136.509926379	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCCTTCATTTCTTG	NA	False	NA	23	True	AATAAA	-23	NA	61396080	61403757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_61396098_61397169_61397239_61399897_61399995_61400295_61400359_61403197_61403266_61403477
ENSMUST00000155235.2	chrX	+	463	2	FSM	ENSMUSG00000031432.4	ENSMUST00000155235.2	463	2	0	0	0	0	multi-exon	FALSE	canonical	3	2349	junction_1	0	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	139357361	139366191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_139357613_139365979
ENSMUST00000155248.2	chr7	+	684	11	FSM	ENSMUSG00000053367.16	ENSMUST00000155248.2	684	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	31.3304963254654	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTGATTCAGTGCGTA	3212	False	NA	6	True	AATAAA	-21	NA	6263534	6284858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_6263544_6266905_6266933_6269828_6269847_6271800_6271807_6272881_6272891_6274395_6274405_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
ENSMUST00000155285.8	chr10	-	2769	10	FSM	ENSMUSG00000020184.16	ENSMUST00000155285.8	2769	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	165.020836694067	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGATTTGTCTTACACA	NA	False	NA	-19	True	AATAAA	-21	NA	117545927	117524799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850
ENSMUST00000155295.8	chr3	-	1034	6	FSM	ENSMUSG00000028041.18	ENSMUST00000155295.8	1034	6	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_5	16.0549057923116	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATAGGTTTTGATTTGCT	NA	False	NA	NA	False	ATTAAA	-24	NA	89257267	89253834	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
ENSMUST00000155296.8	chr8	-	769	4	FSM	ENSMUSG00000031516.12	ENSMUST00000155296.8	769	4	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_2	17.326921891156	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGCCTCAATTTCCATT	NA	False	NA	0	True	AATAAA	-31	NA	34562192	34557573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_34557997_34559664_34559808_34560782_34560831_34562037
ENSMUST00000155349.8	chr4	-	849	3	FSM	ENSMUSG00000085823.8	ENSMUST00000155349.8	849	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	7	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTTTTGCCTTCATGT	NA	False	NA	NA	False	ATTAAA	-16	NA	137611237	137609680	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_137610210_137610538_137610721_137611099
ENSMUST00000155364.8	chr17	+	958	5	FSM	ENSMUSG00000023861.18	ENSMUST00000155364.8	958	5	0	0	0	0	multi-exon	FALSE	canonical	2	460	junction_2	254.978920697378	7287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGAGTGTGACTATATAT	2121	False	NA	4	True	AATAAA	-18	NA	8502593	8516493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_8502794_8512246_8512251_8515366_8515464_8515655_8515789_8515969
ENSMUST00000155387.8	chr16	+	1415	4	FSM	ENSMUSG00000003531.16	ENSMUST00000155387.8	1415	4	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	154.861228201251	2934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGCAGAGGTGCTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	17884311	17889496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_17884721_17887287_17887389_17887945_17888096_17888741
ENSMUST00000155399.2	chr11	-	696	4	FSM	ENSMUSG00000020737.13	ENSMUST00000155399.2	696	4	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_1	143.613679323694	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACACTGGGTGTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	115405197	115391207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115391511_115392830_115392929_115393857_115394001_115405045
ENSMUST00000155452.8	chr16	-	560	6	FSM	ENSMUSG00000022956.12	ENSMUST00000155452.8	560	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	2452.38509210931	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGGGCGTGAGGAGCCTT	952	False	NA	-8	True	AATAAA	-13	NA	91728434	91722108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91725786_91725898_91727241_91727293_91728407
ENSMUST00000155480.9	chr12	-	1970	7	FSM	ENSMUSG00000076432.14	ENSMUST00000155480.9	1970	7	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_1	1514.35583114846	6880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTATTATGGCTTTGTA	NA	False	NA	NA	False	AATAAA	-17	NA	21467589	21440332	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_21441417_21441717_21441801_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
ENSMUST00000155592.8	chr7	-	1091	6	FSM	ENSMUSG00000006335.17	ENSMUST00000155592.8	1091	6	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	68.2800117164606	1406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTCTAGGTCACCGTT	NA	False	NA	-1	True	AATAAA	-16	NA	3632883	3623322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_3623474_3623775_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
ENSMUST00000155611.8	chr16	-	1468	7	FSM	ENSMUSG00000003166.21	ENSMUST00000155611.8	1468	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	165.862392763801	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTTACGTGTGCATTTG	NA	False	NA	69	True	NA	NA	NA	17709513	17667174	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_17667659_17674615_17674793_17675121_17675199_17676223_17676444_17677267_17677391_17690426_17690550_17709249
ENSMUST00000155639.2	chr19	+	771	3	FSM	ENSMUSG00000024925.12	ENSMUST00000155639.2	771	3	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	34.5	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGCCTGAGTCTGTGGG	5147	False	NA	2	True	AATAAA	-11	NA	5652002	5652960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5652109_5652220_5652403_5652477
ENSMUST00000155649.8	chr16	+	1249	4	FSM	ENSMUSG00000014074.18	ENSMUST00000155649.8	1249	4	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	10.6144555520604	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAGAAAAATACAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	32096276	32108012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32097234_32101128_32101206_32104187_32104368_32107977
ENSMUST00000155672.8	chr7	+	1938	8	FSM	ENSMUSG00000041769.14	ENSMUST00000155672.8	1938	8	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_3	92.005767343628	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCCACTGCAGTCTTTA	NA	False	NA	17	True	AATAAA	-31	NA	138448323	138484783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
ENSMUST00000155677.8	chr8	-	639	6	FSM	ENSMUSG00000055553.17	ENSMUST00000155677.8	639	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	323.170543212094	1996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCCCACCCAGTATCACC	NA	False	NA	NA	False	NA	NA	NA	70975830	70966776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70966819_70967244_70967399_70968044_70968092_70971014_70971168_70972586_70972712_70975712
ENSMUST00000155690.2	chr11	-	799	7	FSM	ENSMUSG00000020182.17	ENSMUST00000155690.2	799	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	19.2418814048939	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGGAAGTGGGTCCCAT	NA	False	NA	NA	False	NA	NA	NA	11840369	11796657	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11840337
ENSMUST00000155713.8	chrX	+	1317	5	FSM	ENSMUSG00000034160.14	ENSMUST00000155713.8	1317	5	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	106.6123233965	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAAAGTC	NA	False	NA	NA	False	NA	NA	NA	100683667	100696483	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_100683717_100683823_100683929_100686581_100686763_100687552_100687797_100695745
ENSMUST00000155773.2	chr9	+	450	2	FSM	ENSMUSG00000000167.15	ENSMUST00000155773.2	450	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATTCATACTTGGTAT	62	False	NA	NA	False	AGTAAA	-4	NA	50528820	50530117	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_50528899_50529745
ENSMUST00000155792.2	chrX	+	1333	4	FSM	ENSMUSG00000034160.14	ENSMUST00000155792.2	1333	4	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	90.0530707724926	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGAAGGACAAAGCTGGT	NA	False	NA	NA	False	TTTAAA	-13	NA	100683745	100696500	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_100683929_100686611_100686763_100687552_100687797_100695745
ENSMUST00000155805.2	chr7	+	518	4	FSM	ENSMUSG00000037563.16	ENSMUST00000155805.2	518	4	0	0	0	0	multi-exon	FALSE	canonical	3	19383	junction_2	895.518844022838	16976	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050348	28052121	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28050519_28051601_28051699_28051787_28051836_28051918
ENSMUST00000155837.8	chr2	-	2120	18	FSM	ENSMUSG00000027620.17	ENSMUST00000155837.8	2120	18	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_15	717.627699835322	1713	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	False	NA	0	True	AATAAA	-15	NA	156022096	155989859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156020799_156020873_156021096_156021161_156021806
ENSMUST00000155856.2	chr6	-	1077	3	FSM	ENSMUSG00000052419.8	ENSMUST00000155856.2	1077	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	53.5	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTATTGTTTTGGTCTGCT	0	True	NA	NA	False	AATACA	-22	NA	13871465	13869798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_13870740_13871054_13871163_13871437
ENSMUST00000155873.3	chr4	-	622	5	FSM	ENSMUSG00000059291.16	ENSMUST00000155873.3	622	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	4504.49472749164	5389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGCCGATTGTCCCACG	NA	False	NA	NA	False	NA	NA	NA	135780401	135777590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780280
ENSMUST00000155891.8	chr2	+	1167	11	FSM	ENSMUSG00000027222.15	ENSMUST00000155891.8	1167	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	67.8416538713496	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATGTGGCTCTGTGTCAT	NA	False	NA	20	True	AATAAA	-20	NA	92205020	92211561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_92205167_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
ENSMUST00000155953.8	chr2	-	1590	7	FSM	ENSMUSG00000026972.16	ENSMUST00000155953.8	1590	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	30.4940795711051	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGGGCGAGTGGCTGG	9424	False	NA	-34	True	AATAAA	-14	NA	24825157	24815366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_24815689_24815767_24816461_24816599_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
ENSMUST00000155965.2	chr11	+	473	4	FSM	ENSMUSG00000086003.8	ENSMUST00000155965.2	473	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	38.4967531098403	763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGTTTACCTGCTTGTA	NA	False	NA	15	True	AATAAA	-22	NA	94024327	94046602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_94024382_94029312_94029490_94046281_94046324_94046402
ENSMUST00000155966.8	chr16	-	963	6	FSM	ENSMUSG00000023791.19	ENSMUST00000155966.8	963	6	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_5	129.408500493592	2501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGCTCTTTTCAGAACT	NA	False	NA	-22	True	AATAAA	-8	NA	31918546	31903255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918293
ENSMUST00000155982.2	chr10	-	538	3	FSM	ENSMUSG00000087030.2	ENSMUST00000155982.2	538	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCCTGTCTTTGATGT	NA	False	NA	NA	False	AATAAA	-17	NA	62893246	62891381	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_62891640_62892426_62892599_62893138
ENSMUST00000156108.8	chr3	-	2108	5	FSM	ENSMUSG00000028064.18	ENSMUST00000156108.8	2108	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	4.71036092035419	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTTATGGCGTGCTGTG	NA	False	NA	NA	False	ATTAAA	-20	NA	88348446	88343268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88344560_88345109_88345208_88345489_88345648_88345749_88345869_88348004
ENSMUST00000156145.7	chr4	+	553	2	FSM	ENSMUSG00000028691.13	ENSMUST00000156145.7	553	2	0	0	0	0	multi-exon	FALSE	canonical	3	23986	junction_1	0	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACTGTAATTAAAAAAGTTT	NA	False	NA	NA	False	NA	NA	NA	116542795	116545094	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_116542858_116544603
ENSMUST00000156212.8	chrX	+	2368	9	FSM	ENSMUSG00000009995.18	ENSMUST00000156212.8	2368	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	93.7382492635744	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTCTGTCTTCTGTGTA	NA	False	NA	7	True	AATAAA	-20	NA	73326355	73333754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331946_73332056_73332626_73332710_73332789_73332904
ENSMUST00000156218.2	chr10	-	2124	4	FSM	ENSMUSG00000062931.16	ENSMUST00000156218.2	2124	4	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_1	59.275252471462	1506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTTATTTATGTTGTC	NA	False	NA	NA	False	NA	NA	NA	82077114	82060687	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_82062428_82063278_82063426_82063632_82063760_82077004
ENSMUST00000156236.2	chr13	+	621	4	FSM	ENSMUSG00000086649.2	ENSMUST00000156236.2	621	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	8.73053390247253	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGCTACCGAAAACACTT	861	False	NA	-3	True	NA	NA	NA	111716794	111781364	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_111716936_111717450_111717511_111778756_111779023_111781210
ENSMUST00000156260.2	chr10	+	401	2	FSM	ENSMUSG00000085327.2	ENSMUST00000156260.2	401	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	273	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGGACACAGCAGACATG	NA	False	NA	NA	False	AATAAA	-14	NA	81245408	81247413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_81245600_81247203
ENSMUST00000156291.2	chr19	-	2373	3	FSM	ENSMUSG00000024742.16	ENSMUST00000156291.2	2373	3	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_2	414.5	946	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTCTGAATGTTTGAAAA	1929	False	NA	NA	False	AATAAA	-20	NA	10181533	10176495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10178462_10181051_10181384_10181458
ENSMUST00000156299.8	chrX	-	2080	10	FSM	ENSMUSG00000002010.18	ENSMUST00000156299.8	2080	10	0	0	0	0	multi-exon	FALSE	canonical	3	1120	junction_7	119.009596044257	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72826323_72830380
ENSMUST00000156323.8	chr4	+	1419	14	FSM	ENSMUSG00000012126.17	ENSMUST00000156323.8	1419	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	29.9978302962932	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGCTTCACAAGGCTCT	NA	False	NA	14	True	AATAAA	-14	NA	133829925	133854086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_133829960_133835562_133835667_133836401_133836431_133836870_133836970_133839825_133839921_133840225_133840281_133840667_133840745_133843341_133843469_133850702_133850915_133851152_133851231_133852376_133852481_133853517_133853592_133853676_133853818_133853896
ENSMUST00000156326.2	chr11	+	2249	3	FSM	ENSMUSG00000034757.16	ENSMUST00000156326.2	2249	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	18.5	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTCTTTGTGACTGC	NA	False	NA	16	True	AATAAA	-18	NA	102176021	102180063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_102176545_102178133_102178698_102178901
ENSMUST00000156346.2	chr7	-	673	4	FSM	ENSMUSG00000061787.16	ENSMUST00000156346.2	673	4	0	0	0	0	multi-exon	FALSE	canonical	3	8882	junction_3	2067.57361819759	1397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGCCCGCATGGCTCAGT	NA	False	NA	NA	False	NA	NA	NA	80994980	80993164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_80993549_80994058_80994165_80994604_80994757_80994949
ENSMUST00000156372.8	chr7	+	417	5	FSM	ENSMUSG00000040952.17	ENSMUST00000156372.8	417	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	11130.8331982606	2688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAGAGACCTGGACAGGA	NA	False	NA	NA	False	NA	NA	NA	24584237	24588355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_24584275_24584560_24584632_24584876_24584978_24587706_24587891_24588331
ENSMUST00000156374.9	chr4	-	1909	9	FSM	ENSMUSG00000029022.19	ENSMUST00000156374.9	1909	9	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_8	23.8995292840675	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147952956	147945247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
ENSMUST00000156380.4	chr8	+	1193	4	FSM	ENSMUSG00000087687.4	ENSMUST00000156380.4	1193	4	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	68.3715340376876	3918	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTACTCTTCATTGATTT	5587	False	NA	NA	False	AAAACA	-14	NA	3671550	3674235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_3671612_3672341_3672429_3672592_3672626_3673223
ENSMUST00000156392.8	chr1	-	1122	6	FSM	ENSMUSG00000026049.12	ENSMUST00000156392.8	1122	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	166.814148081031	2237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGTGCCTTTGTTTTAC	NA	False	NA	-3	True	ATTAAA	-17	NA	44141598	44125775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139082_44141487
ENSMUST00000156399.8	chr11	-	1443	7	FSM	ENSMUSG00000020330.17	ENSMUST00000156399.8	1443	7	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_3	43.8203402796261	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTGTTTTCCATAACT	NA	False	NA	NA	False	NA	NA	NA	40624243	40611729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
ENSMUST00000156400.9	chr18	+	1649	4	FSM	ENSMUSG00000024571.16	ENSMUST00000156400.9	1649	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	554.842920714202	4102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTGTGGGAATTCATTG	NA	False	NA	NA	False	AATAAA	-21	NA	80249979	80255956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_80250117_80250444_80250559_80253276_80253346_80254627
ENSMUST00000156421.2	chr3	-	438	3	FSM	ENSMUSG00000028062.16	ENSMUST00000156421.2	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	1321	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGTGTCTCACCTGCTT	1108	False	NA	-8	True	AATAAA	-12	NA	88460200	88457127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88457312_88458002_88458093_88460036
ENSMUST00000156473.8	chrX	-	1114	6	FSM	ENSMUSG00000046032.17	ENSMUST00000156473.8	1114	6	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_2	126.702170462861	1406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTCTCAGCTAGTTTCT	NA	False	NA	-11	True	NA	NA	NA	100266159	100141391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_100141834_100145973_100146042_100257379_100257471_100258006_100258132_100259088_100259185_100265867
ENSMUST00000156489.8	chr11	-	1922	7	FSM	ENSMUSG00000078789.10	ENSMUST00000156489.8	1922	7	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	50.1788468048705	835	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTTCTCCTGCTGCCCC	NA	False	NA	0	True	AATAAA	-21	NA	75074149	75068521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_75069214_75069437_75070140_75070551_75070631_75071386_75071488_75071613_75071771_75072118_75072188_75074027
ENSMUST00000156503.2	chr11	-	375	2	FSM	ENSMUSG00000044894.15	ENSMUST00000156503.2	375	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1697	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2943	False	NA	-8	True	AATAAA	-17	NA	53321658	53319779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_53319978_53321481
ENSMUST00000156520.8	chr9	+	3157	7	FSM	ENSMUSG00000032540.17	ENSMUST00000156520.8	3157	7	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_5	12.9925192151313	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGGGTGAGCTGTGTGT	NA	False	NA	4	True	AATAAA	-17	NA	122180672	122210589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_122180905_122194200_122194287_122196953_122197327_122204970_122205126_122206923_122207036_122207886_122208074_122208577
ENSMUST00000156529.8	chr7	+	2034	7	FSM	ENSMUSG00000030990.19	ENSMUST00000156529.8	2034	7	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	43.1689188601655	631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	594	False	NA	16	True	AATAAA	-23	NA	101872234	101887774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
ENSMUST00000156678.8	chr1	-	913	5	FSM	ENSMUSG00000026701.16	ENSMUST00000156678.8	913	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	765.536209137099	1375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATGGCACCAAAACCTT	NA	False	NA	-20	True	ATTAAA	-2	NA	161078739	161069133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078563
ENSMUST00000156711.8	chr2	+	2809	5	FSM	ENSMUSG00000026848.15	ENSMUST00000156711.8	2809	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	43.5918570377542	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTTTCCTGAGCTTTTCC	NA	False	NA	10	True	AATAAA	-15	NA	30843198	30849024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_30843236_30843763_30844021_30845779_30845966_30846459_30846588_30846823
ENSMUST00000156713.8	chr16	-	3246	21	FSM	ENSMUSG00000022962.16	ENSMUST00000156713.8	3246	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	429.171000301745	1082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTAGCATTTATTTAAGA	1507	False	NA	NA	False	AATAAA	-23	NA	91440034	91418280	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433390_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844
ENSMUST00000156869.2	chr17	+	668	3	FSM	ENSMUSG00000055760.13	ENSMUST00000156869.2	668	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	158	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAATACGATTTTGATGTC	NA	False	NA	NA	False	NA	NA	NA	80531869	80534247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_80532100_80533049_80533194_80533953
ENSMUST00000156915.3	chr15	-	606	4	FSM	ENSMUSG00000014313.16	ENSMUST00000156915.3	606	4	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_3	4177.00884472237	38711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAGTAATTATATGGACA	39	False	NA	-25	True	NA	NA	NA	35938155	35932145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_35932244_35935430_35935560_35937300_35937431_35937906
ENSMUST00000156940.8	chr10	-	1772	3	FSM	ENSMUSG00000019763.12	ENSMUST00000156940.8	1772	3	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_2	8	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACACTGAGTTCAAGTCC	5706	False	NA	NA	False	NA	NA	NA	4382344	4376093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_4377692_4379076_4379172_4382265
ENSMUST00000156961.8	chr19	+	1794	5	FSM	ENSMUSG00000024791.11	ENSMUST00000156961.8	1794	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	194.824921403808	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGCTTTTTATT	NA	False	NA	35	True	AATAAA	-20	NA	6135780	6141807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6135869_6136431_6136498_6136581_6136618_6140080_6140555_6140677
ENSMUST00000156969.8	chr11	-	2324	13	FSM	ENSMUSG00000000384.16	ENSMUST00000156969.8	2324	13	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	134.990406037697	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGCCACTGGCTTTTCT	NA	False	NA	-5	True	AATAAA	-19	NA	6576043	6565597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6565767_6566557_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
ENSMUST00000156970.8	chr8	+	1708	13	FSM	ENSMUSG00000003808.19	ENSMUST00000156970.8	1708	13	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	180.621996322584	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTTGTCATTCATTTC	NA	False	NA	37	True	AATAAA	-37	NA	85583648	85595885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_85583811_85587534_85587587_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
ENSMUST00000157005.3	chr6	-	1053	2	FSM	ENSMUSG00000001521.13	ENSMUST00000157005.3	1053	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTGTTGTTTAATAAG	7517	False	NA	NA	False	CATAAA	-19	NA	128332788	128319203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_128320169_128332700
ENSMUST00000157040.8	chr6	+	2383	12	FSM	ENSMUSG00000051855.16	ENSMUST00000157040.8	2383	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	96.8129319959523	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATTCCGGCTTCCCCTCC	9958	False	NA	13	True	AATAAA	-19	NA	30733504	30748461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_30733613_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050
ENSMUST00000157063.2	chr10	+	722	8	FSM	ENSMUSG00000020153.15	ENSMUST00000157063.2	722	8	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_2	732.821330230511	1727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTTCTGTGTGGACT	9725	False	NA	25	True	AATAAA	-16	NA	80085318	80092628	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80085326_80088230_80088268_80088912_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
ENSMUST00000157065.2	chr15	-	728	5	FSM	ENSMUSG00000005360.15	ENSMUST00000157065.2	728	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	27.3072792493137	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGACTTTCCTTTGTGGTT	NA	False	NA	NA	False	ATTAAA	-18	NA	8739893	8715499	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_8715639_8717194_8717297_8717771_8717910_8738045_8738324_8739822
ENSMUST00000158630.3	chr17	-	128	1	FSM	ENSMUSG00000089255.3	ENSMUST00000158630.3	128	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	322	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGCGACTCTGCTGCCCC	4463	False	NA	NA	False	NA	NA	NA	24938777	24938649	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24938600_24938800
ENSMUST00000159018.8	chr5	+	741	6	FSM	ENSMUSG00000038722.18	ENSMUST00000159018.8	741	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	311.754133894003	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACATTCTTTCTTTTAAG	NA	False	NA	16	True	AATAAA	-17	NA	145077217	145084884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_145077253_145078114_145078171_145079257_145079378_145081708_145081832_145083252_145083420_145084644
ENSMUST00000159087.8	chr1	+	1248	6	FSM	ENSMUSG00000072109.12	ENSMUST00000159087.8	1248	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.4	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTGATCAAGTTCTGGT	NA	False	NA	NA	False	ATTAAA	-16	NA	85084374	85091495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_85084412_85089210_85089288_85089529_85089681_85089912_85090033_85090171_85090307_85090767
ENSMUST00000159121.2	chr15	-	769	4	FSM	ENSMUSG00000022234.16	ENSMUST00000159121.2	769	4	0	0	0	0	multi-exon	FALSE	canonical	3	5907	junction_1	275.901351130355	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGAATCATTTTGGGGAAG	NA	False	NA	NA	False	NA	NA	NA	31601886	31595586	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_31595990_31597556_31597722_31598145_31598207_31601746
ENSMUST00000159124.8	chr6	-	2600	15	FSM	ENSMUSG00000003500.14	ENSMUST00000159124.8	2600	15	0	0	0	0	multi-exon	FALSE	canonical	1	64	junction_14	59.8544152123146	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGATCCTGTTTCTGT	NA	False	NA	-1	True	AATAAA	-19	NA	29216363	29200435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067_29212167_29216070
ENSMUST00000159157.8	chr1	+	723	5	FSM	ENSMUSG00000053332.14	ENSMUST00000159157.8	723	5	0	0	0	0	multi-exon	FALSE	canonical	3	3576	junction_1	996.154951551213	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGGCAACTAAGAATAGTC	NA	False	NA	NA	False	NA	NA	NA	160862735	160864626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389
ENSMUST00000159209.8	chr15	+	944	10	FSM	ENSMUSG00000023010.16	ENSMUST00000159209.8	944	10	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	555.512064964378	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCACCCCCCCACCCCTG	NA	False	NA	-68	True	NA	NA	NA	99291099	99306416	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_99291265_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ENSMUST00000159239.8	chr13	-	1855	13	FSM	ENSMUSG00000039233.13	ENSMUST00000159239.8	1855	13	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_7	16.4519502390041	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAAAAGGAGAAAACA	NA	False	NA	NA	False	NA	NA	NA	14214206	14177648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
ENSMUST00000159268.2	chr9	+	428	2	FSM	ENSMUSG00000090023.2	ENSMUST00000159268.2	428	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCAGAATAAATGTTCCCC	NA	False	NA	NA	False	NA	NA	NA	14756908	14759131	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_14757143_14758937
ENSMUST00000159309.2	chr16	+	497	2	FSM	ENSMUSG00000089874.2	ENSMUST00000159309.2	497	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGGAAAACAGGAAGTGC	NA	False	NA	NA	False	AATAAA	-26	NA	22330229	22336431	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22330290_22335994
ENSMUST00000159364.3	chr8	-	392	2	FSM	ENSMUSG00000089665.3	ENSMUST00000159364.3	392	2	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	0	822	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTTGATGTCTTTCTAT	NA	False	NA	-4	True	AATACA	-15	NA	3722362	3721187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_3721397_3722179
ENSMUST00000159389.8	chr18	-	2662	10	FSM	ENSMUSG00000038425.19	ENSMUST00000159389.8	2662	10	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_7	125.276385801579	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGGCTCTCACTGTAAG	NA	False	NA	-17	True	AATAAA	-18	NA	70663209	70641755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658531_70659627_70659793_70661772_70661899_70662821
ENSMUST00000159441.8	chr1	-	807	3	FSM	ENSMUSG00000060743.13	ENSMUST00000159441.8	807	3	0	0	0	0	multi-exon	FALSE	canonical	3	2337	junction_2	191	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	180641168	180637312	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_180637836_180639363_180639515_180641035
ENSMUST00000159531.3	chr15	+	939	10	FSM	ENSMUSG00000023010.16	ENSMUST00000159531.3	939	10	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_1	587.59549788592	1240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGTACTTAGTGGTTT	NA	False	NA	7	True	AATGAA	-13	NA	99291490	99306491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_99291576_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
ENSMUST00000159545.8	chr4	-	2754	23	FSM	ENSMUSG00000028559.18	ENSMUST00000159545.8	2754	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_21	125.503712368128	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTTCTTTCATT	NA	False	NA	-6	True	CATAAA	-20	NA	109059431	108918851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109029470_109029522_109059301
ENSMUST00000159594.2	chr6	-	682	2	FSM	ENSMUSG00000012483.5	ENSMUST00000159594.2	682	2	0	0	0	0	multi-exon	FALSE	canonical	3	1539	junction_1	0	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTTAAAACATCTTTGATA	-15	True	NA	NA	False	TTTAAA	-16	NA	8259140	8257220	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_8257762_8258999
ENSMUST00000159634.8	chr19	+	1684	12	FSM	ENSMUSG00000071657.13	ENSMUST00000159634.8	1684	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	50.3060057535483	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGTGTGGACATCCG	NA	False	NA	14	True	AATAAA	-14	NA	8815092	8826031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8815229_8816939_8817149_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
ENSMUST00000159663.8	chr1	+	346	8	FSM	ENSMUSG00000053332.14	ENSMUST00000159663.8	346	8	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_6	1912.24889508	7058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865794_160865843_160866026
ENSMUST00000159693.2	chr19	-	705	4	FSM	ENSMUSG00000079478.10	ENSMUST00000159693.2	705	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	231.015631986717	2957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGTTTGTTCTTTCTTGG	NA	False	NA	-1	True	AAAACA	-13	NA	5781760	5780334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5780741_5781268_5781354_5781466_5781624_5781703
ENSMUST00000159706.8	chr1	+	557	11	FSM	ENSMUSG00000053332.14	ENSMUST00000159706.8	557	11	0	0	0	0	multi-exon	TRUE	canonical	3	3085	junction_7	1053.46856146731	89452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	20	True	ATTAAA	-16	NA	160862636	160866107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUST00000159708.8	chr12	+	1308	5	FSM	ENSMUSG00000035142.19	ENSMUST00000159708.8	1308	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	123.067816670322	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGCAT	NA	False	NA	NA	False	NA	NA	NA	52144538	52191563	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_52144675_52145135_52145284_52147249_52147285_52152001_52152179_52190751
ENSMUST00000159759.3	chr19	+	1528	2	FSM	ENSMUSG00000047423.11	ENSMUST00000159759.3	1528	2	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	0	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACACTGTCCTGATGGTT	247	False	NA	34	True	AATAAA	-35	NA	5475171	5477341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5475337_5475978
ENSMUST00000159813.8	chr5	-	1341	8	FSM	ENSMUSG00000001844.11	ENSMUST00000159813.8	1341	8	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_2	78.3753397284568	1445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTTTTCTCATCATT	5305	False	NA	-14	True	AATACA	-25	NA	143314975	143302244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_143302588_143305985_143306231_143307509_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314920
ENSMUST00000159889.3	chr16	-	2639	2	FSM	ENSMUSG00000090021.3	ENSMUST00000159889.3	2639	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAATACACTTAAGCTGCA	NA	False	NA	NA	False	NA	NA	NA	22835788	22832957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_22835341_22835532
ENSMUST00000159890.8	chr1	+	1066	9	FSM	ENSMUSG00000053332.14	ENSMUST00000159890.8	1066	9	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_5	979.227469743369	3340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862757	160866109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863815_160864118_160864150_160864389_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUST00000159917.8	chr10	-	2491	8	FSM	ENSMUSG00000019795.18	ENSMUST00000159917.8	2491	8	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	203.876012741638	1558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCACCAGTCTGGATCCTT	NA	False	NA	-8	True	AATAAA	-12	NA	7539067	7505144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_7506741_7513772_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ENSMUST00000159924.8	chr7	-	805	9	FSM	ENSMUSG00000009687.15	ENSMUST00000159924.8	805	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	43.2810582125715	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCATGGCCTCTGTCTTCT	2720	False	NA	-10	True	GATAAA	-16	NA	30741503	30732157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30737245_30737354_30738462_30738520_30739607_30739683_30740821_30740883_30741471
ENSMUST00000159940.2	chr8	+	746	4	FSM	ENSMUSG00000025812.19	ENSMUST00000159940.2	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	28.2410261066335	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-35	NA	128306204	128337329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_128306285_128319541_128319663_128329539_128329668_128336912
ENSMUST00000160047.8	chr3	+	1196	4	FSM	ENSMUSG00000050150.17	ENSMUST00000160047.8	1196	4	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	29.6348143611905	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTGGTCTTCAAATTTAA	NA	False	NA	14	True	AATAAA	-25	NA	135053806	135063828	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217
ENSMUST00000160052.2	chr9	+	444	1	FSM	ENSMUSG00000090136.5	ENSMUST00000160052.2	444	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45451	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAATGGGGCAAGCTCA	NA	False	NA	NA	False	AATAAA	-43	NA	37164217	37164661	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_37164200_37164700
ENSMUST00000160075.2	chr5	+	928	6	FSM	ENSMUSG00000038722.18	ENSMUST00000160075.2	928	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	298.93035978301	4323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGCTACATTCTTTCTTTT	NA	False	NA	13	True	AATAAA	-14	NA	145077224	145084881	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_145077374_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
ENSMUST00000160079.2	chr17	-	487	1	FSM	ENSMUSG00000089883.2	ENSMUST00000160079.2	487	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	596	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	14083065	14082578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_14082600_14083100
ENSMUST00000160124.2	chr9	+	501	4	FSM	ENSMUSG00000084786.10	ENSMUST00000160124.2	501	4	0	0	0	0	multi-exon	FALSE	canonical	3	1046	junction_3	68.2658203072535	743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	NA	False	NA	16	True	AATAAA	-13	NA	20556336	20558071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_20556556_20556701_20556786_20556917_20556956_20557911
ENSMUST00000160141.2	chr19	-	826	2	FSM	ENSMUSG00000079478.10	ENSMUST00000160141.2	826	2	0	0	0	0	multi-exon	FALSE	canonical	3	503	junction_1	0	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGTTTGTTCTTTCTTGG	NA	False	NA	-1	True	AAAACA	-13	NA	5781688	5780334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5780741_5781268
ENSMUST00000160157.2	chr5	+	980	3	FSM	ENSMUSG00000050552.9	ENSMUST00000160157.2	980	3	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_1	14	3923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCACAGAATGGTTTG	NA	False	NA	38	True	AATAAA	-30	NA	138254092	138257660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_138254596_138256916_138257035_138257301
ENSMUST00000160180.9	chr18	+	833	5	FSM	ENSMUSG00000024646.15	ENSMUST00000160180.9	833	5	0	0	0	0	multi-exon	FALSE	canonical	3	946	junction_4	54.2425110038243	11058	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTGTCTGTTTGGTGT	NA	False	NA	19	True	AATATA	-24	NA	84869462	84897996	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_84869733_84889629_84889759_84891264_84891295_84895951_84895987_84897627
ENSMUST00000160226.8	chr3	-	617	3	FSM	ENSMUSG00000027860.16	ENSMUST00000160226.8	617	3	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_2	64	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATCTATGTACTTGTGTG	NA	False	NA	-11	True	NA	NA	NA	102074289	102070501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_102070850_102072670_102072804_102074153
ENSMUST00000160269.2	chr17	+	763	5	FSM	ENSMUSG00000024146.10	ENSMUST00000160269.2	763	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	278.799210902757	1478	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGAATGAGCAGCACCTTA	NA	False	NA	NA	False	NA	NA	NA	87333038	87342900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_87333082_87335126_87335193_87338435_87338491_87341683_87341788_87342405
ENSMUST00000160271.8	chr4	-	2604	20	FSM	ENSMUSG00000028559.18	ENSMUST00000160271.8	2604	20	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_17	99.0531349615264	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTTTCATTGTTTT	NA	False	NA	-1	True	CATAAA	-25	NA	108975233	108918846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
ENSMUST00000160281.8	chr6	-	648	4	FSM	ENSMUSG00000030042.16	ENSMUST00000160281.8	648	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	443.647257276419	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACATGTGTGGTATGTGCT	NA	False	NA	NA	False	AATAAA	-33	NA	82629851	82598832	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_82599107_82628417_82628460_82629063_82629149_82629604
ENSMUST00000160326.8	chr16	-	4488	31	FSM	ENSMUSG00000022710.18	ENSMUST00000160326.8	4488	31	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_28	198.142330998031	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGATGACTGCTGTGGAAG	6532	False	NA	NA	False	AATAAA	-21	NA	8556284	8507463	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529996_8530057_8534378_8534484_8556067
ENSMUST00000160337.2	chr10	+	1138	8	FSM	ENSMUSG00000019923.15	ENSMUST00000160337.2	1138	8	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_7	327.562862014955	814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGTTGATGTTGTTGT	NA	False	NA	13	True	ATTAAA	-14	NA	72490727	72504997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72504643
ENSMUST00000160372.9	chr10	-	1948	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160372.9	1948	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_2	66.5	611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATAATTTGTTTGAGTC	NA	False	NA	NA	False	AATAAA	-15	NA	29238043	29222171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_29223880_29230287_29230444_29237959
ENSMUST00000160399.8	chr10	+	1845	6	FSM	ENSMUSG00000019883.12	ENSMUST00000160399.8	1845	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	32.6643536596088	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTTATGTCCATTCCAG	NA	False	NA	2	True	AATAGA	-13	NA	29189161	29221556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_29189294_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
ENSMUST00000160403.8	chr7	+	1425	7	FSM	ENSMUSG00000054065.13	ENSMUST00000160403.8	1425	7	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	7.83156008298049	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCCAGCTCCGTGTGT	614	False	NA	16	True	ATTAAA	-14	NA	140668058	140670420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140668315_140668393_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
ENSMUST00000160405.8	chr16	-	4745	32	FSM	ENSMUSG00000022710.18	ENSMUST00000160405.8	4745	32	0	0	0	0	multi-exon	FALSE	canonical	2	419	junction_31	128.599831855963	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGCTGTGGAAGCCGAG	NA	False	NA	NA	False	AATAAA	-26	NA	8610172	8507458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8610099
ENSMUST00000160417.8	chr19	-	718	4	FSM	ENSMUSG00000024799.17	ENSMUST00000160417.8	718	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	116.793264645983	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGAGAGAGCGCGCGCA	9953	False	NA	-10	True	TATAAA	-13	NA	6117880	6116158	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6116445_6116528_6116724_6116997_6117053_6117698
ENSMUST00000160422.8	chr5	+	1756	8	FSM	ENSMUSG00000029625.17	ENSMUST00000160422.8	1756	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	266.097419631784	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTGTTTCATTACTTA	NA	False	NA	22	True	ATTAAA	-14	NA	145104056	145118850	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115567_145115739_145117945
ENSMUST00000160429.8	chr1	+	759	10	FSM	ENSMUSG00000053332.14	ENSMUST00000160429.8	759	10	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_6	1099.1542202985	1605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTGTGAAGTGTGCAT	NA	False	NA	17	True	ATTAAA	-13	NA	160862735	160866104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUST00000160439.8	chr1	+	1206	10	FSM	ENSMUSG00000026197.13	ENSMUST00000160439.8	1206	10	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	30.0361921605614	1170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGTGCTGTTTCTTTTTC	2032	False	NA	16	True	AGTAAA	-22	NA	75145289	75148273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_75145352_75145474_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
ENSMUST00000160477.8	chr12	-	2878	11	FSM	ENSMUSG00000021266.17	ENSMUST00000160477.8	2878	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	772.921237902026	1605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	-31	True	AATAAA	-19	NA	108860063	108825955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108850190_108850275_108854301_108854475_108859994
ENSMUST00000160494.3	chr16	+	706	3	FSM	ENSMUSG00000051297.9	ENSMUST00000160494.3	706	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATATTGGTCTAGAGTTG	NA	False	NA	NA	False	NA	NA	NA	92275629	92294254	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_92275857_92288901_92289064_92293937
ENSMUST00000160507.8	chr14	+	2229	11	FSM	ENSMUSG00000022110.14	ENSMUST00000160507.8	2229	11	0	0	0	0	multi-exon	FALSE	canonical	3	1524	junction_2	74.4957045741565	5844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGGAGTTATGGGTTTT	NA	False	NA	11	True	AATAAA	-14	NA	73790104	73833582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
ENSMUST00000160590.2	chr19	-	840	2	FSM	ENSMUSG00000024797.15	ENSMUST00000160590.2	840	2	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGGTAACTTTTGTTTC	1018	False	NA	1	True	ATTAAA	-20	NA	6127230	6125932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6126523_6126980
ENSMUST00000160629.8	chr5	+	1713	8	FSM	ENSMUSG00000029625.17	ENSMUST00000160629.8	1713	8	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_6	186.36939400129	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTTTCATTACTTAA	NA	False	NA	23	True	ATTAAA	-15	NA	145104022	145118851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115645_145115739_145117945
ENSMUST00000160683.8	chr12	+	1027	10	FSM	ENSMUSG00000060073.10	ENSMUST00000160683.8	1027	10	0	0	0	0	multi-exon	FALSE	canonical	3	3391	junction_7	435.06460425613	1039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTGTTGGGTAATTGA	4770	False	NA	1	True	ATTAAA	-12	NA	71021444	71041275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUST00000160759.8	chr1	-	2838	15	FSM	ENSMUSG00000026709.11	ENSMUST00000160759.8	2838	15	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	103.994407227956	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTATTTAGAGTCTTCC	NA	False	NA	-16	True	AATGAA	-26	NA	160898226	160869074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_160869501_160871182_160871259_160872528_160873047_160874346_160874500_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
ENSMUST00000160784.8	chr15	+	1998	15	FSM	ENSMUSG00000022550.19	ENSMUST00000160784.8	1998	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_14	36.6848826118457	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTTCTTTGTGTTTTAT	3133	False	NA	NA	False	AAGAAA	-1	NA	76460588	76480016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479643_76479738
ENSMUST00000160853.8	chr15	+	1651	8	FSM	ENSMUSG00000022553.17	ENSMUST00000160853.8	1651	8	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	163.413086179455	1205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAACCTGGGAGTTTGT	NA	False	NA	24	True	AATAAA	-16	NA	76235493	76238573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76235860_76236666_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
ENSMUST00000160864.8	chr12	+	859	10	FSM	ENSMUSG00000060073.10	ENSMUST00000160864.8	859	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1213.70727855801	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4782	False	NA	5	True	ATTAAA	-16	NA	71021456	71041279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_71021542_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUST00000160874.8	chr9	+	412	5	FSM	ENSMUSG00000084786.10	ENSMUST00000160874.8	412	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	478.321740567999	3979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	NA	False	NA	16	True	AATAAA	-13	NA	20556130	20558071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_20556190_20556488_20556556_20556701_20556790_20556917_20556956_20557911
ENSMUST00000160880.2	chr12	+	362	4	FSM	ENSMUSG00000021040.16	ENSMUST00000160880.2	362	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1761.37452639188	919	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTTTTATTTGAAATGAGG	NA	False	NA	36	True	AATAAA	-23	NA	87490715	87496694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_87490797_87494333_87494393_87496069_87496171_87496573
ENSMUST00000160885.2	chr17	-	1732	4	FSM	ENSMUSG00000050410.16	ENSMUST00000160885.2	1732	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	32.9983164553722	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTGCGTTGAATCTAAG	9372	False	NA	-8	True	AATAAA	-17	NA	35827682	35823633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35824082_35825370_35825918_35826774_35827437_35827607
ENSMUST00000160890.8	chr14	-	1812	9	FSM	ENSMUSG00000006289.15	ENSMUST00000160890.8	1812	9	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	204.557105413134	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATTAGGTTGTGTTTTTC	NA	False	NA	-5	True	AATAAA	-20	NA	51162329	51153142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154961_51155292_51155389_51157072_51157277_51157386_51157507_51162120
ENSMUST00000160941.8	chr3	+	1407	4	FSM	ENSMUSG00000050150.17	ENSMUST00000160941.8	1407	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	61.0136596727869	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATTGTATTCATTG	NA	False	NA	NA	False	NA	NA	NA	135053806	135064067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135053859_135054090_135054535_135060771_135060833_135063217
ENSMUST00000160968.8	chr1	-	1204	6	FSM	ENSMUSG00000003721.15	ENSMUST00000160968.8	1204	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	77.0817747590181	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGCTAAAAACAAAGCAAAT	NA	False	NA	NA	False	NA	NA	NA	121255475	121233266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255449
ENSMUST00000160972.8	chr1	+	1358	5	FSM	ENSMUSG00000026150.15	ENSMUST00000160972.8	1358	5	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_3	77.3090389281874	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	False	NA	13	True	AATAAA	-13	NA	82706949	82730111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_82707158_82708833_82709004_82713139_82713229_82728240_82728326_82729305
ENSMUST00000161005.8	chr1	+	430	8	FSM	ENSMUSG00000053332.14	ENSMUST00000161005.8	430	8	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	2436.42213426297	2659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862176	160866109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160862290_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865794_160865843_160866026
ENSMUST00000161011.8	chr12	+	1000	9	Antisense	novelGene_ENSMUSG00000021189.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	574	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCGCCCTAGCCACGTGC	NA	False	NA	NA	False	NA	NA	NA	101899184	101924502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr12_+_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
ENSMUST00000161012.8	chr17	-	1665	4	FSM	ENSMUSG00000050410.16	ENSMUST00000161012.8	1665	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	21.6846079563875	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCGTTGAATCTAAGTCT	9333	False	NA	-5	True	AATAAA	-20	NA	35827721	35823630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35824082_35825370_35825918_35826774_35827328_35827607
ENSMUST00000161021.2	chr3	-	818	5	FSM	ENSMUSG00000027860.16	ENSMUST00000161021.2	818	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	100.023434754062	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATGTCCAGGAGGAAGTT	NA	False	NA	NA	False	AAAACA	-27	NA	102074246	102065495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_102065814_102070614_102070850_102072670_102072804_102073088_102073128_102074153
ENSMUST00000161041.2	chr12	+	1022	2	FSM	ENSMUSG00000060073.10	ENSMUST00000161041.2	1022	2	0	0	0	0	multi-exon	FALSE	canonical	3	4712	junction_1	0	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	4807	False	NA	NA	False	NA	NA	NA	71021481	71026468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_71021542_71025506
ENSMUST00000161051.8	chr7	-	3548	22	FSM	ENSMUSG00000005610.18	ENSMUST00000161051.8	3548	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_21	1631.97883445214	2479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	-19	True	AATAAA	-16	NA	110682224	110671138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991_110682031_110682168
ENSMUST00000161074.8	chr10	-	875	5	FSM	ENSMUSG00000019791.13	ENSMUST00000161074.8	875	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	42.7492689995981	2206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTTGTCTTCAGACACAC	NA	False	NA	NA	False	NA	NA	NA	30494475	30484136	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_30484420_30486312_30486440_30487643_30487714_30490708_30490827_30494198
ENSMUST00000161094.8	chr5	-	1824	17	FSM	ENSMUSG00000025533.16	ENSMUST00000161094.8	1824	17	0	0	0	0	multi-exon	FALSE	canonical	1	102	junction_3	46.3975686324187	1150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGGAGAGATGTGTCAGT	NA	False	NA	NA	False	CATAAA	-21	NA	130053222	130040098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882_130052938_130053134
ENSMUST00000161106.8	chr1	+	1285	9	FSM	ENSMUSG00000026197.13	ENSMUST00000161106.8	1285	9	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	45.8732969711138	1077	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGAGTGCTGTTTCTT	2032	False	NA	12	True	AGTAAA	-18	NA	75145289	75148269	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_75145352_75145477_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147398_75147619_75147693_75147879
ENSMUST00000161123.8	chr10	-	2607	9	FSM	ENSMUSG00000019795.18	ENSMUST00000161123.8	2607	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	305.06638621782	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGATCCTTGGTAGTCA	NA	False	NA	0	True	AATAAA	-20	NA	7539028	7505136	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524230_7524425_7524814_7524920_7538838
ENSMUST00000161137.8	chr3	-	1927	8	FSM	ENSMUSG00000027835.12	ENSMUST00000161137.8	1927	8	0	0	0	0	multi-exon	FALSE	canonical	3	1188	junction_3	125.646735098117	3703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTGCTATAAGACAATT	NA	False	NA	-11	True	ATTAAA	-13	NA	75464163	75423796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_75424909_75428008_75428092_75428337_75428417_75434894_75435022_75436116_75436235_75440847_75440902_75448466_75448686_75464028
ENSMUST00000161154.2	chr12	-	1824	11	FSM	ENSMUSG00000021266.17	ENSMUST00000161154.2	1824	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_10	739.608714118486	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	-35	True	AATAAA	-15	NA	108859123	108825959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_108826260_108827194_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859085
ENSMUST00000161172.3	chr2	-	1041	4	FSM	ENSMUSG00000074656.13	ENSMUST00000161172.3	1041	4	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_3	5764.94448272391	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAAAGAAGAA	3772	False	NA	-51	True	NA	NA	NA	154734715	154726294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_154726367_154729623_154729728_154730102_154730281_154734028
ENSMUST00000161181.8	chr5	+	2467	13	FSM	ENSMUSG00000029635.16	ENSMUST00000161181.8	2467	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	40.014580675882	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAAGGTGTTATGTAA	NA	False	NA	NA	False	AATAAA	-19	NA	146168059	146239641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_146168145_146196314_146196391_146205024_146205136_146208404_146208546_146220438_146220497_146222917_146223050_146229448_146229578_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
ENSMUST00000161198.4	chr6	-	1021	2	FSM	ENSMUSG00000057103.12	ENSMUST00000161198.4	1021	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAATGCATGTGATGGCT	9864	False	NA	NA	False	NA	NA	NA	85892669	85887135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_85888003_85892515
ENSMUST00000161199.2	chr5	-	801	2	FSM	ENSMUSG00000001844.11	ENSMUST00000161199.2	801	2	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAATGTCAGTGTTCCCAG	5323	False	NA	NA	False	NA	NA	NA	143314957	143314049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_143314326_143314432
ENSMUST00000161211.8	chr12	-	1059	8	FSM	ENSMUSG00000002679.15	ENSMUST00000161211.8	1059	8	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_7	64.9976451692753	3328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTCCCTTGTCTCTGA	NA	False	NA	1	True	AATAAA	-25	NA	81641780	81620330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_81620735_81621298_81621327_81626343_81626460_81628574_81628684_81629406_81629490_81635756_81635849_81638027_81638188_81641713
ENSMUST00000161229.8	chr1	+	2556	4	FSM	ENSMUSG00000053332.14	ENSMUST00000161229.8	2556	4	0	0	0	0	multi-exon	FALSE	canonical	3	4541	junction_3	423.601489872524	1847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUST00000161262.8	chr18	+	1021	5	FSM	ENSMUSG00000033632.17	ENSMUST00000161262.8	1021	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	17.7200451466693	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAGAGAGGAAATGAAA	NA	False	NA	NA	False	AATAAA	-5	NA	25302070	25322290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25321616
ENSMUST00000161322.3	chr14	-	524	4	FSM	ENSMUSG00000041625.16	ENSMUST00000161322.3	524	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	17.6131264181639	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGCTGTTGCTGTTTGG	NA	False	NA	-13	True	ATTAAA	-18	NA	123150560	123128282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_123128494_123129020_123129229_123137887_123137945_123150512
ENSMUST00000161380.8	chr1	+	600	8	FSM	ENSMUSG00000053332.14	ENSMUST00000161380.8	600	8	0	0	0	0	multi-exon	FALSE	canonical	3	1206	junction_6	1658.79128603096	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGTCTTTGAAATGTGC	NA	False	NA	NA	False	NA	NA	NA	160862732	160865116	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864735_160864857_160864886_160865074
ENSMUST00000161410.8	chr12	-	2764	10	FSM	ENSMUSG00000021266.17	ENSMUST00000161410.8	2764	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	620.186073232944	1411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	-31	True	AATAAA	-19	NA	108859124	108825955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859085
ENSMUST00000161428.8	chr10	-	1073	7	FSM	ENSMUSG00000019795.18	ENSMUST00000161428.8	1073	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	348.511477572834	635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCATTCTTGCTTTATT	NA	False	NA	1	True	AATAAA	-21	NA	7524919	7513493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_7513990_7514631_7514760_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814
ENSMUST00000161459.8	chr14	-	2995	14	FSM	ENSMUSG00000071350.13	ENSMUST00000161459.8	2995	14	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_12	10.965249034588	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTTTGTGATTATTAT	NA	False	NA	NA	False	TATAAA	-13	NA	59678333	59639457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_59639866_59644094_59644184_59646626_59646968_59649539_59649634_59650160_59650261_59650929_59651129_59653147_59653318_59654857_59654975_59656449_59657011_59660836_59660934_59663937_59664004_59668591_59668718_59674885_59675215_59678035
ENSMUST00000161461.8	chr1	+	793	11	FSM	ENSMUSG00000053332.14	ENSMUST00000161461.8	793	11	0	0	0	0	multi-exon	FALSE	canonical	3	1206	junction_6	1709.07735342787	2997	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862747	160866109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUST00000161527.8	chr15	+	1743	9	FSM	ENSMUSG00000022553.17	ENSMUST00000161527.8	1743	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	277.590075471008	1209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGAACCTGGGAGTTTG	NA	False	NA	23	True	AATAAA	-15	NA	76235493	76238572	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76235860_76236195_76236242_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
ENSMUST00000161528.2	chr19	-	732	5	FSM	ENSMUSG00000024799.17	ENSMUST00000161528.2	732	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	104.193329920874	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTATGGTTTTGCTTTAA	9948	False	NA	-68	True	NA	NA	NA	6117885	6116216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6116445_6116528_6116594_6116997_6117053_6117152_6117350_6117698
ENSMUST00000161576.8	chr8	+	1952	8	FSM	ENSMUSG00000031770.17	ENSMUST00000161576.8	1952	8	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_6	55.7864002152818	802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCAAGCTTGCTGTGTCT	NA	False	NA	47	True	AATAAA	-40	NA	95113065	95122005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_95113367_95115983_95116062_95116148_95116224_95117345_95117477_95118359_95118483_95118801_95119153_95120423_95120530_95121218
ENSMUST00000161587.8	chr17	+	1786	5	FSM	ENSMUSG00000043592.16	ENSMUST00000161587.8	1786	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	10.7092249953019	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATACTGGTACTTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	48769362	48775708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_48769467_48770389_48770492_48771469_48771571_48771943_48772058_48774343
ENSMUST00000161608.8	chr1	-	2495	7	FSM	ENSMUSG00000054770.17	ENSMUST00000161608.8	2495	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	29.1228241914978	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTTTTCTGTGACTAC	NA	False	NA	-4	True	AATAAA	-20	NA	58008683	57994411	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004509_58004700_58006655_58006883_58008565
ENSMUST00000161623.8	chr1	+	403	6	FSM	ENSMUSG00000053332.14	ENSMUST00000161623.8	403	6	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_2	1008.25591989336	1414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160864264	160866109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUST00000161639.8	chr13	+	3157	21	FSM	ENSMUSG00000021666.17	ENSMUST00000161639.8	3157	21	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	31.6045487232455	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCCTAACAAATCTTAATT	NA	False	NA	NA	False	AATAAA	-25	NA	97274485	97312959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_97274568_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107
ENSMUST00000161651.2	chr15	+	582	2	FSM	ENSMUSG00000022313.11	ENSMUST00000161651.2	582	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTCAGTTGTTGCTTTG	NA	False	NA	27	True	AGTAAA	-24	NA	51740873	51746085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_51741040_51745669
ENSMUST00000161706.2	chr17	-	183	2	FSM	ENSMUSG00000090101.2	ENSMUST00000161706.2	183	2	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_1	0	1749	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATCGTATGTTGGTGTTT	4301	False	NA	-8	True	AATAAA	-15	NA	24938939	24938504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24938582_24938833
ENSMUST00000161712.8	chr12	-	2154	8	FSM	ENSMUSG00000079036.11	ENSMUST00000161712.8	2154	8	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_6	99.4164606745846	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACCTGTATCTGTCTTT	NA	False	NA	-56	True	AATAAA	-19	NA	87490606	87474849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87488040_87488114_87488412_87488551_87490411
ENSMUST00000161714.2	chr13	-	336	1	FSM	ENSMUSG00000089868.2	ENSMUST00000161714.2	336	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	197	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	63595079	63594743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_63594700_63595100
ENSMUST00000161739.8	chr6	-	3893	15	FSM	ENSMUSG00000040669.15	ENSMUST00000161739.8	3893	15	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_10	176.752392241987	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCATTGTCTTACTGCA	9076	False	NA	-19	True	ATTAAA	-34	NA	122316617	122294696	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
ENSMUST00000161796.9	chr9	-	862	6	FSM	ENSMUSG00000066456.15	ENSMUST00000161796.9	862	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	6.24179461373089	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATCCACCTGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	83028658	82992000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_82992483_82993086_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
ENSMUST00000161807.8	chr14	-	962	11	FSM	ENSMUSG00000079197.11	ENSMUST00000161807.8	962	11	0	0	0	0	multi-exon	FALSE	canonical	3	915	junction_9	61.4455856835949	8799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTGTGTTGTTCATTGA	NA	False	NA	NA	False	AATAAA	-21	NA	55828544	55824897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55825023_55825110_55825198_55825496_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827163_55827489_55827553_55827951_55827985_55828298
ENSMUST00000161882.8	chr9	+	489	5	FSM	ENSMUSG00000084786.10	ENSMUST00000161882.8	489	5	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_4	473.611127403063	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGCTTTGCTGCTGTC	NA	False	NA	10	True	AATAAA	-7	NA	20556163	20558065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556917_20556990_20557825
ENSMUST00000161885.8	chr17	-	805	5	FSM	ENSMUSG00000061207.12	ENSMUST00000161885.8	805	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	37.4457941563535	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTTTCTGTGTCCTTTG	5651	False	NA	-5	True	AATAAA	-15	NA	35055843	35042969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35043301_35043489_35043638_35043726_35043825_35055405_35055543_35055752
ENSMUST00000161892.2	chr15	+	597	3	FSM	ENSMUSG00000022452.17	ENSMUST00000161892.2	597	3	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	632.5	20136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGCTTGGTTGCACTTTA	NA	False	NA	62	True	AATAAA	-44	NA	82230214	82233292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_82230422_82232100_82232242_82233043
ENSMUST00000161913.8	chr13	+	1829	16	FSM	ENSMUSG00000021666.17	ENSMUST00000161913.8	1829	16	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	32.7972898609355	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTACATCTCACATATACA	NA	False	NA	NA	False	AATAAA	-19	NA	97274492	97304999	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_97274568_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773
ENSMUST00000162004.8	chr19	-	2847	20	FSM	ENSMUSG00000025188.16	ENSMUST00000162004.8	2847	20	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_19	17.2102848848348	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTATTTGTGTGTGTACA	NA	False	NA	88	True	NA	NA	NA	42768417	42743543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755148_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768352
ENSMUST00000162048.8	chr11	+	4014	24	FSM	ENSMUSG00000040463.17	ENSMUST00000162048.8	4014	24	0	0	0	0	multi-exon	FALSE	canonical	3	2360	junction_6	202.660116632124	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAGAAAAAAGAGAAGCTG	NA	False	NA	NA	False	NA	NA	NA	72332182	72342055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
ENSMUST00000162096.8	chr5	-	1489	7	FSM	ENSMUSG00000066861.15	ENSMUST00000162096.8	1489	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	130.842674825745	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121025676	121014784	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_121015091_121015245_121015273_121016383_121016538_121017162_121017396_121019886_121020133_121023835_121024125_121025442
ENSMUST00000162099.8	chr6	-	2580	15	FSM	ENSMUSG00000003500.14	ENSMUST00000162099.8	2580	15	0	0	0	0	multi-exon	FALSE	canonical	1	42	junction_14	63.7043554080817	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTGATCCTGTTTCTG	7	False	NA	-2	True	AATAAA	-18	NA	29216341	29200436	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067_29212170_29216070
ENSMUST00000162116.8	chr7	-	817	9	FSM	ENSMUSG00000009687.15	ENSMUST00000162116.8	817	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	43.2810582125715	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCATGGCCTCTGTCTTCT	2720	False	NA	-10	True	GATAAA	-16	NA	30741503	30732157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30737245_30737354_30738462_30738520_30739607_30739683_30740821_30740895_30741471
ENSMUST00000162117.3	chr17	-	1591	7	FSM	ENSMUSG00000037577.14	ENSMUST00000162117.3	1591	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	2.21108319357027	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCGGTCTGATGTTTAA	994	False	NA	NA	False	CATAAA	-26	NA	32408523	32403633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_32404096_32404189_32404327_32404419_32404524_32407149_32407279_32407384_32407543_32407759_32407846_32408008
ENSMUST00000162134.2	chr19	+	2314	3	FSM	ENSMUSG00000006463.14	ENSMUST00000162134.2	2314	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	74.5	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCATGTCTTTTTGTTTGT	NA	False	NA	20	True	NA	NA	NA	4928717	4935423	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4928834_4930148_4930427_4933503
ENSMUST00000162160.8	chr15	-	850	8	FSM	ENSMUSG00000022635.10	ENSMUST00000162160.8	850	8	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	229.028917165408	3425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGACTGGTTTTAGTCTT	NA	False	NA	2	True	AATAAA	-30	NA	93296182	93283977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_93284165_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93293467_93293497_93295050_93295137_93296043
ENSMUST00000162163.8	chr1	+	1614	7	FSM	ENSMUSG00000053332.14	ENSMUST00000162163.8	1614	7	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_3	1089.57866474462	2094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862753	160866109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUST00000162183.8	chr15	-	2130	10	FSM	ENSMUSG00000035845.18	ENSMUST00000162183.8	2130	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	14.1691718917785	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGTGTCTTGTTGTTGGTC	9244	False	NA	0	True	AATAAA	-17	NA	88703521	88689446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_88690258_88690601_88690678_88690760_88690925_88695499_88695724_88696258_88696363_88698656_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
ENSMUST00000162246.9	chr9	-	983	6	FSM	ENSMUSG00000066456.15	ENSMUST00000162246.9	983	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	12.1556571192182	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATCCACCTGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	83028738	82992000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_82992483_82993045_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
ENSMUST00000162247.8	chr12	-	1883	6	FSM	ENSMUSG00000079036.11	ENSMUST00000162247.8	1883	6	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_2	71.1983145867934	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTATCTGTCTTTGAG	NA	False	NA	-53	True	AATAAA	-22	NA	87490598	87474846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87490411
ENSMUST00000162261.8	chr1	-	633	5	FSM	ENSMUSG00000073481.10	ENSMUST00000162261.8	633	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	388.369910652203	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGAATGCTACACCC	NA	False	NA	-24	True	AATAAA	-17	NA	184559464	184545888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184559304
ENSMUST00000162289.8	chr1	+	904	10	FSM	ENSMUSG00000053332.14	ENSMUST00000162289.8	904	10	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_7	1101.2203780296	1029	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAACTGTGAAGTGTGCA	NA	False	NA	16	True	ATTAAA	-12	NA	160862732	160866103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074_160865608_160865794_160865843_160866026
ENSMUST00000162303.8	chr9	+	505	5	FSM	ENSMUSG00000084786.10	ENSMUST00000162303.8	505	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	467.366558495577	1105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	NA	False	NA	16	True	AATAAA	-13	NA	20556116	20558071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_20556273_20556488_20556556_20556701_20556786_20556917_20556956_20557911
ENSMUST00000162308.8	chr5	+	705	5	FSM	ENSMUSG00000038722.18	ENSMUST00000162308.8	705	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	349.672257263856	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACATTCTTTCTTTTAAG	NA	False	NA	16	True	AATAAA	-17	NA	145077206	145084884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_145077253_145078114_145078247_145079257_145079378_145083252_145083420_145084644
ENSMUST00000162320.2	chr13	-	1241	6	FSM	ENSMUSG00000021597.17	ENSMUST00000162320.2	1241	6	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	13.9283882771841	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-45	NA	77283579	77253684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
ENSMUST00000162326.2	chr13	-	1853	17	FSM	ENSMUSG00000039233.13	ENSMUST00000162326.2	1853	17	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	33.754571449657	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGATTTCTCTGCCCTTT	NA	False	NA	-6	True	AATAAA	-13	NA	14214223	14172537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178117_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
ENSMUST00000162360.8	chr5	-	607	5	FSM	ENSMUSG00000038690.16	ENSMUST00000162360.8	607	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	2943.81371480941	22193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	9969	False	NA	-10	True	AATAAA	-17	NA	145128402	145120515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145125002_145125133_145128312
ENSMUST00000162364.8	chr1	+	2840	8	FSM	ENSMUSG00000025979.14	ENSMUST00000162364.8	2840	8	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_7	40.5985824624356	3664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGTATTCTTGCTTT	NA	False	NA	13	True	CATAAA	-13	NA	55170389	55194058	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_55170519_55175835_55175899_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
ENSMUST00000162405.8	chr10	-	1135	3	FSM	ENSMUSG00000071324.12	ENSMUST00000162405.8	1135	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	0.5	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGAATCCTGAGTCTCATC	NA	False	NA	NA	False	AATAAA	-33	NA	41894376	41875803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_41876495_41887763_41888020_41894188
ENSMUST00000162413.9	chr16	-	1687	10	FSM	ENSMUSG00000022858.17	ENSMUST00000162413.9	1687	10	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_8	660.884723143114	2584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTTCTTTCTAAATATC	NA	False	NA	-20	True	AATAAA	-14	NA	22084676	22065211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
ENSMUST00000162446.2	chr19	+	1341	2	FSM	ENSMUSG00000037847.15	ENSMUST00000162446.2	1341	2	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18609325	18614663	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_18609446_18613442
ENSMUST00000162466.8	chr8	-	1735	19	FSM	ENSMUSG00000031878.19	ENSMUST00000162466.8	1735	19	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_15	163.229558869982	2674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3334	False	NA	NA	False	AATAAA	-19	NA	105261268	105237659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254818_105254850_105256687_105256749_105257024_105257129_105261143
ENSMUST00000162503.8	chr15	+	2040	15	FSM	ENSMUSG00000022550.19	ENSMUST00000162503.8	2040	15	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_10	17.9268638913668	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTTCTTTGTGTTTTAT	3102	False	NA	NA	False	AAGAAA	-1	NA	76460557	76480016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
ENSMUST00000162543.8	chr5	+	664	4	FSM	ENSMUSG00000037720.17	ENSMUST00000162543.8	664	4	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_1	54.4691553898983	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATCTCTCAATGTTCTT	NA	False	NA	NA	False	TATAAA	-29	NA	67417993	67421955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612
ENSMUST00000162549.2	chr19	-	1164	3	FSM	ENSMUSG00000024799.17	ENSMUST00000162549.2	1164	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	128.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAATCTTGAGAGAGAGA	9936	False	NA	-27	True	AATAGA	-18	NA	6117897	6116175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6117053_6117152_6117350_6117807
ENSMUST00000162558.8	chr1	+	502	12	FSM	ENSMUSG00000053332.14	ENSMUST00000162558.8	502	12	0	0	0	0	multi-exon	FALSE	canonical	3	1206	junction_7	1656.43137771865	65969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	20	True	ATTAAA	-16	NA	160862732	160866107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
ENSMUST00000162594.8	chr5	+	867	6	FSM	ENSMUSG00000038722.18	ENSMUST00000162594.8	867	6	0	0	0	0	multi-exon	FALSE	canonical	3	705	junction_1	67.372397908936	5923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTTCTTTTAAGAGTG	NA	False	NA	20	True	AATAAA	-21	NA	145077171	145084888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_145077253_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
ENSMUST00000162610.8	chr10	-	1554	6	FSM	ENSMUSG00000019806.14	ENSMUST00000162610.8	1554	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	15.3179633110933	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGTCTGCACTGTTCA	NA	False	NA	0	True	AATAAA	-17	NA	13744724	13522797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_13523451_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
ENSMUST00000162711.2	chr12	+	914	6	FSM	ENSMUSG00000021024.15	ENSMUST00000162711.2	914	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1071.30021935963	1797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTTTGGAAATGGCGGT	NA	False	NA	3	True	AATAAA	-4	NA	55445579	55465226	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_55445777_55454786_55454869_55456911_55457068_55458971_55459151_55461188_55461284_55465021
ENSMUST00000162748.2	chr12	-	896	6	FSM	ENSMUSG00000021266.17	ENSMUST00000162748.2	896	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	744.511813203793	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGGTGAACGTTTAGCTG	NA	False	NA	NA	False	NA	NA	NA	108860027	108841039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854237_108854475_108859994
ENSMUST00000162767.2	chr3	+	1545	6	FSM	ENSMUSG00000050150.17	ENSMUST00000162767.2	1545	6	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	32.6521055982612	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTCAAAAATCAATTGATC	NA	False	NA	NA	False	AAAAAG	-3	NA	135054090	135080462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034
ENSMUST00000162786.2	chr6	-	565	3	FSM	ENSMUSG00000033769.17	ENSMUST00000162786.2	565	3	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_1	24	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAATCATTGAGTAGT	NA	False	NA	NA	False	AATAAA	-31	NA	85046457	84981799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_84982019_84988299_84988466_85046277
ENSMUST00000162787.9	chr4	-	2408	23	FSM	ENSMUSG00000028559.18	ENSMUST00000162787.9	2408	23	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_17	111.643220473462	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCAGTTACAATTTTGACT	NA	False	NA	2	True	ATTAAA	-29	NA	109059469	108919275	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
ENSMUST00000162789.9	chr12	-	1059	5	FSM	ENSMUSG00000021124.14	ENSMUST00000162789.9	1059	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	311.173183291877	1081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGTTTTACAGTTGTGAG	NA	False	NA	84	True	AATACA	-36	NA	79219222	79202943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79218993
ENSMUST00000162811.2	chr11	-	2788	3	FSM	ENSMUSG00000044066.15	ENSMUST00000162811.2	2788	3	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	11	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTGTAGCTCAGTTGAC	3044	False	NA	-9	True	AATAAA	-16	NA	20199429	20188386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_20190699_20191885_20192239_20199306
ENSMUST00000162834.3	chr15	-	1982	9	FSM	ENSMUSG00000018042.19	ENSMUST00000162834.3	1982	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	535.950499113491	2545	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCAGCGTTTCTCTGGG	NA	False	NA	0	True	AGTAAA	-18	NA	83054378	83037694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83054337
ENSMUST00000162851.8	chr12	+	562	7	FSM	ENSMUSG00000060073.10	ENSMUST00000162851.8	562	7	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	1480.68865359632	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTTGGGTAATTGAAGC	4788	False	NA	4	True	ATTAAA	-15	NA	71021462	71041278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_71021542_71025506_71025590_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
ENSMUST00000162890.2	chr5	+	600	3	FSM	ENSMUSG00000089889.3	ENSMUST00000162890.2	600	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTCGAAGGCCTTTAAT	NA	False	NA	NA	False	AATAAA	-18	NA	143315081	143318456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_143315109_143316458_143316641_143318065
ENSMUST00000162936.8	chr12	+	1986	11	FSM	ENSMUSG00000020571.14	ENSMUST00000162936.8	1986	11	0	0	0	0	multi-exon	FALSE	canonical	3	2590	junction_6	177.381199680237	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTTTAGAGTTTTGTGT	NA	False	NA	NA	False	AATAAA	-14	NA	17316545	17331811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911
ENSMUST00000162957.8	chr14	-	1465	6	FSM	ENSMUSG00000035953.15	ENSMUST00000162957.8	1465	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	295.870647412007	1112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCACTTAACAACTT	NA	False	NA	-9	True	AATAAA	-18	NA	51168269	51164671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51167040_51167148_51167590_51167782_51168069
ENSMUST00000163085.8	chr10	-	1132	7	FSM	ENSMUSG00000019795.18	ENSMUST00000163085.8	1132	7	0	0	0	0	multi-exon	FALSE	canonical	3	667	junction_3	37.7491721763537	3125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCATTCTTGCTTTATT	NA	False	NA	1	True	AATAAA	-21	NA	7539025	7513493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
ENSMUST00000163091.8	chr13	-	2995	16	FSM	ENSMUSG00000021461.18	ENSMUST00000163091.8	2995	16	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	40.6849139389802	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTCAGACCTTCCTACT	NA	False	NA	-7	True	AATAAA	-17	NA	63579539	63459568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_63460618_63464997_63465097_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63550655_63550853_63579263
ENSMUST00000163093.2	chr19	-	1378	5	FSM	ENSMUSG00000071573.15	ENSMUST00000163093.2	1378	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	8.20060973342836	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTCGTTTTATAGCCTC	NA	False	NA	NA	False	AATAAA	-15	NA	33369695	33115146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_33115675_33145721_33145898_33179874_33180049_33359766_33359926_33369354
ENSMUST00000163140.2	chr8	-	807	4	FSM	ENSMUSG00000031879.15	ENSMUST00000163140.2	807	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	52.8288641642889	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGCCTTAGCGTCTCTCA	NA	False	NA	-3	True	AATAAA	-25	NA	105368331	105366472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_105366719_105367151_105367198_105367599_105367726_105367942
ENSMUST00000163147.8	chr1	-	3370	25	FSM	ENSMUSG00000026383.15	ENSMUST00000163147.8	3370	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	20.0580754034102	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGATAATG	NA	False	NA	NA	False	TTTAAA	-37	NA	119576664	119475860	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_119476926_119477616_119477748_119478251_119478294_119481935_119482011_119482781_119482873_119495525_119495591_119497774_119497904_119500535_119500634_119506643_119506808_119526734_119526851_119527927_119527992_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576514
ENSMUST00000163168.9	chr6	+	2401	3	FSM	ENSMUSG00000042079.14	ENSMUST00000163168.9	2401	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	255	2632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	3788	False	NA	NA	False	AATAAA	-14	NA	117883809	117902580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_117884170_117894430_117894560_117900668
ENSMUST00000163220.10	chr12	+	671	6	FSM	ENSMUSG00000037787.15	ENSMUST00000163220.10	671	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	244.938686205344	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTGCTTTTGGGTGTGG	1560	False	NA	NA	False	NA	NA	NA	111679713	111721487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_111679853_111689045_111689244_111690773_111690838_111696455_111696547_111717620_111717710_111721397
ENSMUST00000163233.2	chrX	-	1256	3	FSM	ENSMUSG00000041353.13	ENSMUST00000163233.2	1256	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	123	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATATCTGACTTGAGA	NA	False	NA	NA	False	GATAAA	-15	NA	149223901	149191579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_149192597_149203337_149203438_149223762
ENSMUST00000163242.3	chr15	+	1937	12	FSM	ENSMUSG00000016541.11	ENSMUST00000163242.3	1937	12	0	0	0	0	multi-exon	FALSE	canonical	3	1134	junction_3	91.244743989915	3143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGACCCTTGATTGGA	NA	False	NA	25	True	AATAAA	-33	NA	85220445	85347413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
ENSMUST00000163246.8	chr10	-	1395	8	FSM	ENSMUSG00000061904.13	ENSMUST00000163246.8	1395	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1829.96665521087	859	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	-4	True	AATAAA	-16	NA	90959819	90952652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957969_90958194_90959419_90959569_90959777
ENSMUST00000163311.9	chr7	-	1288	6	FSM	ENSMUSG00000061479.16	ENSMUST00000163311.9	1288	6	0	0	0	0	multi-exon	FALSE	canonical	3	2141	junction_5	100.882902416614	2917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	-8	True	ATTAAA	-26	NA	26895185	26886431	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868
ENSMUST00000163329.2	chr9	+	1364	11	FSM	ENSMUSG00000055720.11	ENSMUST00000163329.2	1364	11	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	59.3140792729686	2029	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818268	57837251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_57818343_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUST00000163352.9	chr16	+	391	4	FSM	ENSMUSG00000075229.12	ENSMUST00000163352.9	391	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	405.618320866085	911	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTCTGAGCCAGCAGGC	NA	False	NA	NA	False	NA	NA	NA	35892449	35912329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_35892508_35905386_35905534_35910270_35910331_35912203
ENSMUST00000163377.10	chr10	+	1158	3	FSM	ENSMUSG00000064030.16	ENSMUST00000163377.10	1158	3	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_1	26	1190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGTCAGGCTTTGGCTC	NA	False	NA	NA	False	AATAAA	-15	NA	128583757	128602432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128583868_128601015_128601110_128601478
ENSMUST00000163389.9	chr7	+	1749	13	FSM	ENSMUSG00000030890.17	ENSMUST00000163389.9	1749	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	93.7171794401764	984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCTCGTGTGGGGACAGA	NA	False	NA	25	True	AATAAA	-15	NA	105385931	105392129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_105386014_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
ENSMUST00000163399.8	chrX	+	1991	7	FSM	ENSMUSG00000046774.18	ENSMUST00000163399.8	1991	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_5	79.7050116924205	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGCTGTACTTTTGCAA	NA	False	NA	NA	False	NA	NA	NA	100838261	100842244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841763_100841947_100841990_100842072
ENSMUST00000163482.8	chr7	+	668	8	FSM	ENSMUSG00000078765.12	ENSMUST00000163482.8	668	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	252.85778853832	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGGTTTCCTTCCAC	NA	False	NA	35	True	AATAAA	-23	NA	30262772	30264789	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30262834_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30263926_30264217_30264224_30264519
ENSMUST00000163483.2	chr11	+	2657	6	FSM	ENSMUSG00000020149.18	ENSMUST00000163483.2	2657	6	0	0	0	0	multi-exon	FALSE	canonical	3	1848	junction_1	130.08397287906	4456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCGCTTGTTGGGTCTAT	NA	False	NA	NA	False	AATAAA	-24	NA	20151601	20176856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
ENSMUST00000163506.3	chr15	-	1771	14	FSM	ENSMUSG00000037570.17	ENSMUST00000163506.3	1771	14	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_13	210.299476515005	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAAGTAGCTTCTTTTAT	NA	False	NA	-8	True	AATAAA	-12	NA	99149826	99140706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99149742
ENSMUST00000163521.2	chr13	+	674	3	FSM	ENSMUSG00000021555.16	ENSMUST00000163521.2	674	3	0	0	0	0	multi-exon	FALSE	canonical	3	837	junction_1	54.5	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAATAGTG	9511	False	NA	NA	False	NA	NA	NA	59743172	59748077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_59743197_59745853_59745969_59747542
ENSMUST00000163528.8	chr1	-	3413	14	FSM	ENSMUSG00000046836.14	ENSMUST00000163528.8	3413	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_13	29.2690033348083	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTCGCTGGATTTATGT	NA	False	NA	NA	False	AATAAA	-15	NA	183078800	183057917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078725
ENSMUST00000163530.8	chr3	-	2157	16	FSM	ENSMUSG00000028107.15	ENSMUST00000163530.8	2157	16	0	0	0	0	multi-exon	FALSE	canonical	1	51	junction_13	151.691997884602	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662183	95647287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95660318_95660443_95661630_95661828_95662069
ENSMUST00000163558.3	chr13	-	678	4	FSM	ENSMUSG00000068184.8	ENSMUST00000163558.3	678	4	0	0	0	0	multi-exon	FALSE	canonical	3	548	junction_2	39.4151691047439	2044	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295157	108189122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_108189489_108217886_108217928_108228067_108228158_108294976
ENSMUST00000163600.8	chr13	+	1055	9	FSM	ENSMUSG00000021548.11	ENSMUST00000163600.8	1055	9	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_4	292.63455772516	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTGTGATTGTTTTA	NA	False	NA	15	True	ATTAAA	-22	NA	85337595	85361029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350559_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
ENSMUST00000163602.9	chr10	-	1609	6	FSM	ENSMUSG00000052151.13	ENSMUST00000163602.9	1609	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_5	21.5462293684997	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCATGTTGATTTTTCAA	NA	False	NA	0	True	TATAAA	-22	NA	79369626	79362263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366863_79369498
ENSMUST00000163643.3	chr8	-	3129	24	FSM	ENSMUSG00000006276.11	ENSMUST00000163643.3	3129	24	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	82.9540606689901	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATGAGACTATCTTCT	NA	False	NA	NA	False	TATAAA	-39	NA	73175304	73094842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_73095369_73099809_73100016_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
ENSMUST00000163654.8	chr7	+	781	7	FSM	ENSMUSG00000078765.12	ENSMUST00000163654.8	781	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_6	203.636454387606	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGTCTGTGGTTTCCTTCC	NA	False	NA	33	True	AATAAA	-21	NA	30262749	30264787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264519
ENSMUST00000163666.3	chr11	-	1774	11	FSM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	0	0	0	0	multi-exon	FALSE	canonical	3	9657	junction_10	1402.57834362292	45984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	False	NA	64	True	AATAAA	-19	NA	69563143	69557761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
ENSMUST00000163668.3	chr2	-	1733	11	FSM	ENSMUSG00000026860.17	ENSMUST00000163668.3	1733	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	145.180714972754	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGATCTCAGTCCATG	NA	False	NA	-12	True	AATAAA	-14	NA	30249301	30234822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
ENSMUST00000163710.8	chr7	-	885	13	FSM	ENSMUSG00000064179.14	ENSMUST00000163710.8	885	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	20.3570558338435	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTTCTTCAGGGTTGTT	9197	False	NA	-11	True	AATAAA	-19	NA	4518958	4507661	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950_4513068_4513315_4513380_4515263_4515283_4516809_4516837_4517211_4517226_4517335_4517379_4518929
ENSMUST00000163717.2	chr17	+	1920	9	FSM	ENSMUSG00000034681.18	ENSMUST00000163717.2	1920	9	0	0	0	0	multi-exon	FALSE	canonical	3	410	junction_1	446.592917963328	3539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAGTGCTGGTTTTAC	913	False	NA	NA	False	AATAAA	-18	NA	24633648	24644869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24633709_24634014_24634137_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUST00000163750.8	chr14	-	514	5	FSM	ENSMUSG00000010376.16	ENSMUST00000163750.8	514	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	800.314742773117	537	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGGACTCTTTCTTCTT	NA	False	NA	-13	True	AATAAA	-13	NA	55909330	55899721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55899858_55899914_55900083_55900871_55900955_55901268_55901317_55909251
ENSMUST00000163756.2	chr8	+	1337	9	FSM	ENSMUSG00000079033.11	ENSMUST00000163756.2	1337	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	87.8193280263519	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	8825	False	NA	5	True	NA	NA	NA	70592360	70620138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70592423_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619077_70619263_70619349_70619468_70619557_70619715
ENSMUST00000163779.8	chr6	-	1188	6	FSM	ENSMUSG00000025889.14	ENSMUST00000163779.8	1188	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	6.34350061086148	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCCTGGTTCCTTTTAC	6723	False	NA	-2	True	AATAAA	-24	NA	60806839	60708558	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_60709146_60710087_60710172_60792600_60792744_60795307_60795350_60804464_60804612_60806654
ENSMUST00000163812.9	chr7	+	3026	14	FSM	ENSMUSG00000038943.17	ENSMUST00000163812.9	3026	14	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_13	239.092317096712	667	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTTTGTCTTCAATGG	NA	False	NA	18	True	AATAAA	-28	NA	79944197	79966007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79964861
ENSMUST00000163837.2	chr8	-	1272	13	FSM	ENSMUSG00000031708.18	ENSMUST00000163837.2	1272	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_10	1132.45025644985	9159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84321058	84298328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300337_84300552_84301106_84301158_84320968
ENSMUST00000163844.8	chr9	+	2222	14	FSM	ENSMUSG00000006932.18	ENSMUST00000163844.8	2222	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	182.056821873097	13740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCGTCCTTTAGGTAAGAAA	NA	False	NA	NA	False	NA	NA	NA	120779286	120788583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_120779300_120779587_120779790_120780057_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785039_120786172_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
ENSMUST00000163845.4	chr7	+	4178	32	FSM	ENSMUSG00000030447.16	ENSMUST00000163845.4	4178	32	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	151.121606179654	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATAAAAAAACAA	NA	False	NA	-22	True	NA	NA	NA	55492002	55580219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_55492056_55503749_55503803_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547985_55548140_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
ENSMUST00000163869.2	chr8	+	1467	7	FSM	ENSMUSG00000091490.4	ENSMUST00000163869.2	1467	7	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_2	46.4351399504968	1046	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43636155	43646918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
ENSMUST00000163884.8	chr16	+	1645	9	FSM	ENSMUSG00000002845.15	ENSMUST00000163884.8	1645	9	0	0	0	0	multi-exon	FALSE	canonical	1	310	junction_8	142.984210229661	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGATCTATTTTTTCTTGCG	7070	False	NA	0	True	GATAAA	-12	NA	38379059	38411552	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
ENSMUST00000163889.3	chr14	-	1886	17	FSM	ENSMUSG00000040472.16	ENSMUST00000163889.3	1886	17	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_16	115.082697847027	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGCCAAGCTACCATTA	NA	False	NA	-19	True	AATAAA	-19	NA	55959720	55953781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959657
ENSMUST00000163946.2	chr4	-	762	3	FSM	ENSMUSG00000078570.11	ENSMUST00000163946.2	762	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	68	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGACCTTTCTTTTCTG	7655	False	NA	-2	True	ATTAAA	-21	NA	124744523	124743277	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_124743756_124744024_124744227_124744441
ENSMUST00000163949.9	chr6	+	2561	12	FSM	ENSMUSG00000051855.16	ENSMUST00000163949.9	2561	12	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_7	40.2939611577855	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATTCCGGCTTCCCCTCC	-3	True	NA	13	True	AATAAA	-19	NA	30738048	30748461	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_30738335_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050
ENSMUST00000163966.8	chr17	-	703	6	FSM	ENSMUSG00000023944.15	ENSMUST00000163966.8	703	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4038.94278246177	1255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATGGGCTTGGCAGTGTT	NA	False	NA	-171	True	AAGAAA	-40	NA	45884181	45881588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45881726_45881943_45882104_45882338_45882408_45882444_45882546_45882690_45882838_45884092
ENSMUST00000164044.8	chr1	-	1347	5	FSM	ENSMUSG00000059498.14	ENSMUST00000164044.8	1347	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	72.4581775923187	967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGATCTCCTTTTGGTGA	NA	False	NA	-8	True	AATAAA	-23	NA	170886972	170878743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_170879422_170881507_170881763_170885259_170885518_170886154_170886176_170886837
ENSMUST00000164079.9	chr9	+	1005	6	FSM	ENSMUSG00000031939.17	ENSMUST00000164079.9	1005	6	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_1	106.167791726116	1529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGTTGCTTGATTTCAGA	9122	False	NA	NA	False	AATAAA	-17	NA	15217559	15223094	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
ENSMUST00000164083.4	chr10	+	1473	11	FSM	ENSMUSG00000044475.15	ENSMUST00000164083.4	1473	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	64.3808201252516	816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTGTGGTCTGTGCACG	NA	False	NA	28	True	AATAAA	-18	NA	59839148	59935810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_59839239_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
ENSMUST00000164122.2	chr3	+	472	2	FSM	ENSMUSG00000001416.14	ENSMUST00000164122.2	472	2	0	0	0	0	multi-exon	FALSE	canonical	3	2565	junction_1	0	1569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACCGTTGTCATGTGTT	865	False	NA	20	True	ATTAAA	-12	NA	88228301	88229071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_88228453_88228750
ENSMUST00000164166.8	chr3	+	1804	12	FSM	ENSMUSG00000001416.14	ENSMUST00000164166.8	1804	12	0	0	0	0	multi-exon	FALSE	canonical	1	19	junction_2	744.224284153619	7922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCGTTGTCATGTGTTTT	3862	False	NA	22	True	ATTAAA	-14	NA	88204480	88229073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_88204574_88206648_88206711_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
ENSMUST00000164181.2	chr10	-	665	6	FSM	ENSMUSG00000090841.3	ENSMUST00000164181.2	665	6	0	0	0	0	multi-exon	FALSE	canonical	3	2189	junction_3	223.361948415571	56391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTTCTTTCTTTCTTTC	8224	False	NA	-4	True	AATAAA	-21	NA	128329744	128326728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
ENSMUST00000164199.8	chr10	-	1371	6	FSM	ENSMUSG00000025374.14	ENSMUST00000164199.8	1371	6	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	33.0732520324204	1280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTCTGTGTTTCTC	NA	False	NA	-7	True	AATAAA	-13	NA	128245597	128237263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115
ENSMUST00000164242.9	chr17	+	2656	18	FSM	ENSMUSG00000040312.15	ENSMUST00000164242.9	2656	18	0	0	0	0	multi-exon	TRUE	canonical	3	44	junction_1	24.5503507751598	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCTGGAGATGTTTGAG	4432	False	NA	11	True	AATAAA	-13	NA	35827996	35841893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35828127_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
ENSMUST00000164243.2	chr12	+	2317	15	FSM	ENSMUSG00000079108.7	ENSMUST00000164243.2	2317	15	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_10	278.282643353546	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATTGGTTGGTTCATTGA	NA	False	NA	NA	False	ATTAAA	-15	NA	55286110	55309805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_55286189_55287044_55287137_55288157_55288243_55292723_55292829_55294017_55294085_55294164_55294223_55296788_55296940_55298428_55298578_55298911_55299013_55299556_55299644_55302323_55302398_55302752_55302862_55304209_55304381_55307187_55307284_55308911
ENSMUST00000164259.9	chr10	-	2627	15	FSM	ENSMUSG00000040462.14	ENSMUST00000164259.9	2627	15	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_3	48.7011398265807	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCATCAGGCTCTGTGGG	NA	False	NA	-4	True	AATAAA	-14	NA	126957000	126931520	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_126932242_126932498_126932612_126932783_126932949_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
ENSMUST00000164342.10	chr17	-	2559	11	FSM	ENSMUSG00000012296.17	ENSMUST00000164342.10	2559	11	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_7	88.074059745194	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5819	False	NA	-30	True	AATAAA	-18	NA	46593939	46568799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46582725_46582856_46593271_46593366_46593885
ENSMUST00000164359.8	chr11	-	1281	7	FSM	ENSMUSG00000078812.11	ENSMUST00000164359.8	1281	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_6	9789.73126404511	4552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCAGTTGTTTATTTGTT	6572	False	NA	-9	True	AATAAA	-26	NA	69811911	69807539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811849
ENSMUST00000164399.8	chr2	+	983	3	FSM	ENSMUSG00000035268.15	ENSMUST00000164399.8	983	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	157.5	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGATCTTTTCTTTTAAC	8590	False	NA	14	True	AATAAA	-24	NA	163500305	163568078	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_163500413_163563047_163563222_163567376
ENSMUST00000164458.10	chr16	-	2190	21	FSM	ENSMUSG00000022771.18	ENSMUST00000164458.10	2190	21	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	166.780814244325	1246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCGTTCATGACCTGGT	NA	False	NA	NA	False	AATAAA	-18	NA	16929077	16904419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_16904980_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
ENSMUST00000164470.3	chr8	-	2189	16	FSM	ENSMUSG00000031948.15	ENSMUST00000164470.3	2189	16	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_15	556.875793053432	1865	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737898	112720074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112735113_112735172_112737841
ENSMUST00000164472.8	chr6	+	1098	3	FSM	ENSMUSG00000059689.16	ENSMUST00000164472.8	1098	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	15	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGTATTTTTCATAATT	NA	False	NA	10	True	AATAAA	-17	NA	117818202	117822916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_117818230_117820213_117820354_117821985
ENSMUST00000164476.8	chr8	-	1247	5	FSM	ENSMUSG00000004994.13	ENSMUST00000164476.8	1247	5	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_2	16.6508258053467	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGCCTTGTTTCTAAAC	2384	False	NA	-23	True	ATTAAA	-14	NA	84988535	84984930	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84985556_84985741_84985881_84986922_84987096_84987171_84987315_84988368
ENSMUST00000164505.2	chr10	-	1483	7	FSM	ENSMUSG00000061904.13	ENSMUST00000164505.2	1483	7	0	0	0	0	multi-exon	FALSE	canonical	3	3785	junction_3	269.875073979713	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCATCTATTCCTGATGT	NA	False	NA	-21	True	NA	NA	NA	90959817	90952669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419
ENSMUST00000164506.3	chr11	-	2316	5	FSM	ENSMUSG00000020925.17	ENSMUST00000164506.3	2316	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	239.593405585379	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTCTTCTGTCTTGTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	102588560	102575513	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_102577323_102579626_102579688_102581028_102581163_102582936_102583025_102588336
ENSMUST00000164512.8	chr14	-	1990	7	FSM	ENSMUSG00000079391.11	ENSMUST00000164512.8	1990	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.80183061767393	695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	18287197	18264877	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_18266022_18269520_18269704_18270378_18270511_18271460_18271624_18272355_18272488_18282237_18282389_18287112
ENSMUST00000164542.8	chr15	-	730	6	FSM	ENSMUSG00000022370.14	ENSMUST00000164542.8	730	6	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	366.126754007407	1370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	False	NA	0	True	AATAAA	-20	NA	55420745	55397489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55418715_55418840_55420653
ENSMUST00000164543.2	chr19	-	341	2	FSM	ENSMUSG00000025204.11	ENSMUST00000164543.2	341	2	0	0	0	0	multi-exon	FALSE	canonical	3	4404	junction_1	0	2384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGCTCTGGTTTCTGT	4534	False	NA	-22	True	AATAAA	-14	NA	44541319	44538693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_44538852_44541136
ENSMUST00000164553.8	chr7	+	2798	2	FSM	ENSMUSG00000068566.14	ENSMUST00000164553.8	2798	2	0	0	0	0	multi-exon	FALSE	canonical	3	952	junction_1	0	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAAAAAACCCTCAATATA	2790	False	NA	-13	True	TTTAAA	-10	NA	3341618	3347838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3341816_3345237
ENSMUST00000164589.9	chr7	-	1293	8	FSM	ENSMUSG00000030590.16	ENSMUST00000164589.9	1293	8	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_3	23.9565934002925	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATCTTGTTTCTGTTAG	NA	False	NA	-1	True	AATAAA	-21	NA	28855659	28851934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309_28855456_28855554
ENSMUST00000164609.8	chrX	-	1811	4	FSM	ENSMUSG00000031422.17	ENSMUST00000164609.8	1811	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	1452.09664508485	864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTGTGGTG	NA	False	NA	NA	False	AATAAA	-23	NA	135643667	135633701	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135643572
ENSMUST00000164655.2	chr14	-	2843	8	FSM	ENSMUSG00000060373.16	ENSMUST00000164655.2	2843	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	1536.09765314579	4860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCATAGTTGGTATATACA	8725	False	NA	-34	True	AATAAA	-19	NA	52341485	52310836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321874_52341345
ENSMUST00000164659.8	chr10	+	2602	12	FSM	ENSMUSG00000019970.16	ENSMUST00000164659.8	2602	12	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	208.20654874943	1034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTGTGTCATGTGTTA	NA	False	NA	13	True	AATAAA	-19	NA	21854570	21875797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
ENSMUST00000164688.2	chr15	+	1020	3	FSM	ENSMUSG00000023048.14	ENSMUST00000164688.2	1020	3	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_2	60	3107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTCTACTCACCTGTGCC	3286	False	NA	10	True	AATAAA	-13	NA	102368517	102371211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102368582_102368804_102369155_102370605
ENSMUST00000164744.8	chr6	-	2465	17	FSM	ENSMUSG00000030061.17	ENSMUST00000164744.8	2465	17	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_16	154.413292315623	1276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAATTGCAATTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	97182521	97160630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182493
ENSMUST00000164776.8	chr19	-	3412	30	FSM	ENSMUSG00000025159.9	ENSMUST00000164776.8	3412	30	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_29	55.4890911711589	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATGGGCACACTCACGTG	NA	False	NA	-14	True	AATAAA	-10	NA	41969575	41932649	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942457_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41969437
ENSMUST00000164791.8	chr11	+	1252	9	FSM	ENSMUSG00000020407.14	ENSMUST00000164791.8	1252	9	0	0	0	0	multi-exon	FALSE	canonical	3	2502	junction_1	159.654656602932	17812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTGTGTGACTCTGCGGT	NA	False	NA	23	True	AATAAA	-17	NA	9068506	9086167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
ENSMUST00000164868.8	chr14	+	1864	8	FSM	ENSMUSG00000021906.15	ENSMUST00000164868.8	1864	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	99.0186541897587	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATGTTTAATGTTTCAG	NA	False	NA	20	True	AATACA	-19	NA	31807767	31825159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_31808011_31813592_31813717_31814024_31814089_31817321_31817429_31818443_31818586_31821490_31821589_31822911_31823052_31824213
ENSMUST00000164907.3	chr17	-	1965	2	FSM	ENSMUSG00000054723.7	ENSMUST00000164907.3	1965	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGACTCTACCTTTTTTC	6865	False	NA	-6	True	AATAAA	-16	NA	57024680	57020935	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_57022818_57024597
ENSMUST00000164916.9	chr16	+	1073	5	FSM	ENSMUSG00000075229.12	ENSMUST00000164916.9	1073	5	0	0	0	0	multi-exon	FALSE	canonical	3	859	junction_1	27.9284800875379	17433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTTATTTGGTGACTTT	NA	False	NA	25	True	ATTAAA	-22	NA	35892054	35912490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_35892508_35903060_35903187_35905386_35905534_35910270_35910331_35912203
ENSMUST00000164924.8	chr7	+	1957	10	FSM	ENSMUSG00000025509.16	ENSMUST00000164924.8	1957	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	33.2714239899796	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCATGTTACCCTTGC	9976	False	NA	28	True	AATAAA	-29	NA	141035141	141040016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_141035387_141036480_141036563_141037185_141037419_141037504_141037571_141037996_141038128_141038342_141038404_141038504_141038673_141038757_141038891_141039079_141039203_141039301
ENSMUST00000164957.8	chr15	+	1055	4	FSM	ENSMUSG00000023048.14	ENSMUST00000164957.8	1055	4	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_1	130.244215056008	3199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCACCTGTGCCATTACC	2405	False	NA	16	True	AATAAA	-19	NA	102367636	102371217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102367691_102368542_102368582_102368804_102369155_102370605
ENSMUST00000164961.8	chr15	+	735	4	FSM	ENSMUSG00000001285.13	ENSMUST00000164961.8	735	4	0	0	0	0	multi-exon	FALSE	canonical	3	510	junction_2	3.2659863237109	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCCAGTCCCTGATCCA	1713	False	NA	16	True	AATAAA	-17	NA	102245205	102246286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102245420_102245535_102245659_102245763_102245946_102246070
ENSMUST00000164980.8	chr5	-	3136	9	FSM	ENSMUSG00000004530.13	ENSMUST00000164980.8	3136	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	320.074112511462	934	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTGTGCTGTGCTTCTTT	NA	False	NA	NA	False	GATAAA	-15	NA	114046766	113980496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_113982530_113983221_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113990231_113990362_114003699_114003823_114020018_114020219_114046671
ENSMUST00000165007.9	chr17	-	1954	11	FSM	ENSMUSG00000063576.13	ENSMUST00000165007.9	1954	11	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	118.520082686438	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGTGTCCTATTTCTGGC	NA	False	NA	-3	True	TATAAA	-14	NA	46991840	46985478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46991627
ENSMUST00000165015.9	chr14	+	1619	3	FSM	ENSMUSG00000035235.14	ENSMUST00000165015.9	1619	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	100	806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGAGTTTGTGCTGTG	NA	False	NA	18	True	AATAAA	-16	NA	61835695	61843395	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_61835796_61837242_61837345_61841978
ENSMUST00000165017.2	chr19	+	3634	13	FSM	ENSMUSG00000015176.12	ENSMUST00000165017.2	3634	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	313.587042674491	1831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGTTCAGAGTTATGTC	137	False	NA	11	True	AATAAA	-14	NA	46064301	46073967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_46064589_46067141_46067198_46067311_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
ENSMUST00000165028.8	chr10	-	2676	14	FSM	ENSMUSG00000042570.15	ENSMUST00000165028.8	2676	14	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_13	38.1023225308973	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCTCATGGATTCCA	NA	False	NA	-3	True	ATTAAA	-16	NA	79391033	79376078	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385514_79386149_79386241_79390907
ENSMUST00000165086.8	chr18	-	2778	9	FSM	ENSMUSG00000063889.17	ENSMUST00000165086.8	2778	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_7	23.777286956253	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGTGTGTATGTCT	-20	True	NA	-2	True	TATAAA	-17	NA	3337589	3266355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_3268130_3273421_3273579_3276693_3276730_3295039_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3327493_3327592_3337379
ENSMUST00000165096.9	chr7	-	2837	15	FSM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_9	19.4401226165613	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTTTCCCTCTTAT	NA	False	NA	0	True	AATAAA	-21	NA	126613793	126586031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997_126588115_126588717_126589105_126591446_126591645_126591725_126591971_126592691_126592974_126594907_126595145_126595409_126595505_126597397_126597530_126597644_126597769_126600651_126600848_126600980_126601131_126613690
ENSMUST00000165123.8	chr18	+	4083	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165123.8	4083	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	613.012254927549	2102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGAGAGGCTGGTTGTCT	428	False	NA	13	True	AATAAA	-16	NA	61688344	61723132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
ENSMUST00000165126.9	chr8	-	387	3	FSM	ENSMUSG00000090137.9	ENSMUST00000165126.9	387	3	0	0	0	0	multi-exon	FALSE	canonical	3	22365	junction_1	190	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTGGTCATACCTGGCA	NA	False	NA	-73	True	NA	NA	NA	70962273	70960981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70961179_70961945_70962033_70962170
ENSMUST00000165127.8	chr17	-	572	5	FSM	ENSMUSG00000023944.15	ENSMUST00000165127.8	572	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4660.44286388107	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAAGGAGTTTGATGGGA	NA	False	NA	-130	True	NA	NA	NA	45884179	45879943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45880053_45880165_45880314_45880395_45880477_45882690_45882838_45884092
ENSMUST00000165164.9	chr6	+	918	9	FSM	ENSMUSG00000069678.11	ENSMUST00000165164.9	918	9	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	14.5408906192159	1491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCATCTTCCTTCTTAC	106	False	NA	24	True	AATAAA	-16	NA	83055326	83057836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83055460_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
ENSMUST00000165242.4	chr6	-	2679	7	FSM	ENSMUSG00000033216.10	ENSMUST00000165242.4	2679	7	0	0	0	0	multi-exon	TRUE	canonical	3	371	junction_3	47.1643108952333	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGTGATCAAATGACTT	NA	False	NA	-8	True	ATTAAA	-16	NA	88423521	88234315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_88235374_88258530_88258688_88274558_88275219_88332464_88332630_88335527_88335625_88353185_88353394_88423187
ENSMUST00000165306.3	chr17	+	1518	3	FSM	ENSMUSG00000092417.4	ENSMUST00000165306.3	1518	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	21.5	558	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGTTTACTTTCTTGAA	4589	False	NA	14	True	AATAAA	-14	NA	35340458	35343790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35340775_35342028_35342636_35343195
ENSMUST00000165307.8	chr3	+	3274	7	FSM	ENSMUSG00000015749.13	ENSMUST00000165307.8	3274	7	0	0	0	0	multi-exon	FALSE	canonical	3	1451	junction_5	106.857641540301	7061	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTTCAGTGTGTGATTG	NA	False	NA	105	True	AATAAA	-22	NA	95836557	95854702	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491
ENSMUST00000165313.2	chr2	-	1975	5	FSM	ENSMUSG00000036249.17	ENSMUST00000165313.2	1975	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	13.0455931256497	498	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGTGAGCTGCATCATT	NA	False	NA	NA	False	NA	NA	NA	51824656	51814462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_51815947_51816692_51816773_51819671_51819862_51822411_51822536_51824559
ENSMUST00000165392.8	chr6	-	1643	4	FSM	ENSMUSG00000032641.19	ENSMUST00000165392.8	1643	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	41.0636362518253	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTCCTGTGGATTTTGT	NA	False	NA	-3	True	ACTAAA	-34	NA	134874778	134846055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_134847407_134864592_134864749_134874124_134874177_134874694
ENSMUST00000165485.8	chr19	+	1557	11	FSM	ENSMUSG00000024909.16	ENSMUST00000165485.8	1557	11	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	7.8873316146844	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGGCTGAGGTGGGTGA	NA	False	NA	10	True	AATAAA	-15	NA	5524715	5531881	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5524803_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
ENSMUST00000165515.8	chr17	+	2078	12	FSM	ENSMUSG00000048440.17	ENSMUST00000165515.8	2078	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	22.7559818672762	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCATGTCTTGGTTCCATT	NA	False	NA	21	True	NA	NA	NA	32755550	32770772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_32755630_32755968_32756171_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
ENSMUST00000165532.3	chr9	+	1009	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	0	0	0	0	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	123729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACCATAGTCGAGTATAA	NA	False	NA	26	True	AATAAA	-35	NA	120400509	120403720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
ENSMUST00000165563.8	chr10	+	2442	12	FSM	ENSMUSG00000020111.16	ENSMUST00000165563.8	2442	12	0	0	0	0	multi-exon	FALSE	canonical	2	105	junction_7	32.1836157690049	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTCTGTGTCCTTTCTTT	NA	False	NA	27	True	NA	NA	NA	59538298	59699954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_59538510_59563778_59563941_59568804_59568980_59576481_59576645_59586325_59586370_59603959_59604075_59623762_59623846_59624700_59624899_59663010_59663149_59675496_59675606_59697384_59697475_59699000
ENSMUST00000165584.8	chr12	+	809	7	FSM	ENSMUSG00000021111.16	ENSMUST00000165584.8	809	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	661.770709704065	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAGTCTTATTTCTGTGA	NA	False	NA	17	True	AATAAA	-20	NA	105750998	105775968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_105751174_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782
ENSMUST00000165605.4	chr8	-	1271	9	FSM	ENSMUSG00000038515.11	ENSMUST00000165605.4	1271	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	168.585614377384	1008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTCATGATCTTAGTTGG	3722	False	NA	-1	True	CATAAA	-17	NA	13250535	13226869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_13227143_13229322_13229509_13229582_13229756_13236882_13236980_13238509_13238561_13239622_13239748_13242049_13242209_13250048_13250201_13250480
ENSMUST00000165630.3	chr8	+	2267	15	FSM	ENSMUSG00000042870.16	ENSMUST00000165630.3	2267	15	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	29.4884965464743	465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTCTGGCGGAAGCAA	NA	False	NA	12	True	AATAAA	-25	NA	75760332	75796749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_75760456_75774620_75774706_75776817_75776897_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75787060_75787182_75791021_75791098_75794149_75794210_75795723_75795764_75795877
ENSMUST00000165721.8	chr18	+	2323	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165721.8	2323	10	0	0	0	0	multi-exon	FALSE	canonical	3	816	junction_9	364.192494210831	1019	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGTGAAATTTTTTTA	467	False	NA	27	True	ATTAAA	-20	NA	61688383	61721375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
ENSMUST00000165735.9	chr9	-	1376	5	FSM	ENSMUSG00000001348.16	ENSMUST00000165735.9	1376	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	107.395006867172	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGTGTCATCAAGGTTA	5016	False	NA	-19	True	AATAAA	-21	NA	22047007	22038022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22046908
ENSMUST00000165740.9	chr8	-	1120	12	FSM	ENSMUSG00000031708.18	ENSMUST00000165740.9	1120	12	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_9	1051.54616581631	11143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84321113	84298328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300499_84300552_84301106_84301158_84320968
ENSMUST00000165790.9	chr16	+	2544	7	FSM	ENSMUSG00000022750.19	ENSMUST00000165790.9	2544	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	179.822520527572	1214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGTGTTACATCTAATG	NA	False	NA	1	True	AATAAA	-10	NA	17577540	17611228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_17577571_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
ENSMUST00000165806.8	chr10	-	1775	11	NIC	ENSMUSG00000092190.2	novel	331	2	NA	NA	-2051	17520	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1502	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGGCGTGCGCGCGCAGG	NA	False	NA	NA	False	NA	NA	NA	7638914	7601763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_chr10_-_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7624539_7624662_7627307_7627414_7628507_7628667_7635460_7635588_7636498_7636634_7637006_7637134_7638553
ENSMUST00000165842.3	chr3	+	1562	4	FSM	ENSMUSG00000028102.16	ENSMUST00000165842.3	1562	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	131.995791178692	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTTTTATTCAATTCA	NA	False	NA	9	True	ATTAAA	-16	NA	96543148	96552042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96543241_96543989_96544106_96544446_96544649_96550890
ENSMUST00000165867.8	chr8	+	2442	19	FSM	ENSMUSG00000031753.17	ENSMUST00000165867.8	2442	19	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	97.5620252220714	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTCTAAGCAGTTACAG	9194	False	NA	NA	False	NA	NA	NA	111573231	111608527	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_111573445_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
ENSMUST00000165878.2	chr10	+	2564	14	FSM	ENSMUSG00000004207.15	ENSMUST00000165878.2	2564	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	281.713585719074	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCTGGCCTTGTGTCTCT	4508	False	NA	NA	False	AATAAA	-16	NA	60120282	60138376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_60120354_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
ENSMUST00000165935.2	chr15	+	3473	8	FSM	ENSMUSG00000036167.17	ENSMUST00000165935.2	3473	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	58.0576771628957	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAATGTTCACT	NA	False	NA	NA	False	TATAAA	-21	NA	93296344	93389379	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_93296586_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
ENSMUST00000165953.3	chr17	+	1381	11	FSM	ENSMUSG00000024369.17	ENSMUST00000165953.3	1381	11	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	101.735146335964	2204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTATTGTAACTGCTTT	4	True	NA	NA	False	AAAAAG	-13	NA	35069383	35075348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35069439_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
ENSMUST00000165964.10	chr7	+	3166	28	FSM	ENSMUSG00000056394.21	ENSMUST00000165964.10	3166	28	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_1	177.886980349259	1015	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGTGAGGAGGTCTACA	3059	False	NA	30	True	AATAAA	-18	NA	13013190	13045350	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_13013400_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
ENSMUST00000165999.2	chr17	+	1693	13	FSM	ENSMUSG00000091586.3	ENSMUST00000165999.2	1693	13	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_12	8.54725426997206	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGATCTACTACTGTCCCA	NA	False	NA	NA	False	NA	NA	NA	32725435	32747868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_32725553_32725867_32726067_32736867_32737013_32739336_32739391_32739476_32739605_32741091_32741214_32742975_32743247_32743552_32743620_32743808_32743939_32746814_32746949_32747020_32747086_32747249_32747333_32747690
ENSMUST00000166010.2	chrX	-	1318	4	FSM	ENSMUSG00000025264.13	ENSMUST00000166010.2	1318	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	140.42158745087	752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTATCCATTGTCCTCCCC	NA	False	NA	-3	True	AATAAA	-21	NA	149879539	149872476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_149873411_149873600_149873778_149874671_149874764_149879424
ENSMUST00000166021.8	chr3	+	1768	9	FSM	ENSMUSG00000028069.17	ENSMUST00000166021.8	1768	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	81.6783898898601	1247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTGTTTTGTTTTTGA	1719	False	NA	39	True	TTTAAA	-28	NA	87950414	87963300	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_87950487_87950773_87950909_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
ENSMUST00000166078.9	chr8	-	2234	15	FSM	ENSMUSG00000031575.19	ENSMUST00000166078.9	2234	15	0	0	0	0	multi-exon	FALSE	canonical	3	3119	junction_12	186.608342443171	7642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGCTTCACTGGAAGTGA	NA	False	NA	-6	True	AATAAA	-25	NA	26330110	26306897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039
ENSMUST00000166099.3	chr5	+	1101	5	FSM	ENSMUSG00000079165.11	ENSMUST00000166099.3	1101	5	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_4	13.4976849866931	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTCTGCAGTGGGACAT	1204	False	NA	26	True	AATAAA	-18	NA	137639698	137641164	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
ENSMUST00000166104.9	chr13	+	1193	7	FSM	ENSMUSG00000015536.15	ENSMUST00000166104.9	1193	7	0	0	0	0	multi-exon	TRUE	canonical	3	133	junction_2	16.9844700306551	752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATAGATCCTGTCTCC	NA	False	NA	NA	False	AATAAA	-18	NA	114954771	114965259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746_114961898_114962693_114962818_114964824
ENSMUST00000166120.9	chr12	-	990	6	FSM	ENSMUSG00000021079.17	ENSMUST00000166120.9	990	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	130.329735670721	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTTGTCTTTACTGTA	NA	False	NA	-19	True	AATAAA	-12	NA	71183422	71169947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71179280_71179417_71183328
ENSMUST00000166192.7	chr6	-	3155	24	FSM	ENSMUSG00000025607.16	ENSMUST00000166192.7	3155	24	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	47.3145369461355	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCAAAGTTGCTATACT	NA	False	NA	-14	True	AATAAA	-15	NA	30873729	30748410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_30748987_30749404_30749501_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
ENSMUST00000166214.9	chr18	+	2906	24	FSM	ENSMUSG00000038299.17	ENSMUST00000166214.9	2906	24	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_23	153.127237455201	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGGGTTCTTTTTTTCT	9050	False	NA	14	True	ATTAAA	-7	NA	32970363	32999453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905_32998972_32999240
ENSMUST00000166223.2	chr15	-	1908	16	FSM	ENSMUSG00000022464.15	ENSMUST00000166223.2	1908	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	409.635849125646	605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCGTGCAGTGCAGTGTG	NA	False	NA	-9	True	ATTAAA	-26	NA	96918203	96894645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96918183
ENSMUST00000166278.7	chr3	+	1689	3	FSM	ENSMUSG00000037661.15	ENSMUST00000166278.7	1689	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	125	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTTATTTGTTTTTTGT	NA	False	NA	34	True	AATAAA	-19	NA	30910098	30951341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_30910207_30931383_30931482_30949858
ENSMUST00000166291.8	chr1	-	360	4	FSM	ENSMUSG00000090553.9	ENSMUST00000166291.8	360	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	1734.66788367879	1248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACATTGTTTCATTCTG	NA	False	NA	-14	True	AATAAA	-25	NA	133537970	133531613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_133531815_133536634_133536698_133537455_133537483_133537901
ENSMUST00000166407.9	chr19	+	1033	10	FSM	ENSMUSG00000071655.13	ENSMUST00000166407.9	1033	10	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	323.787653323045	10295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTATATGCCTGGCTC	5912	False	NA	25	True	AATAAA	-13	NA	8848922	8853020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8848950_8849034_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ENSMUST00000166411.8	chr2	+	2088	12	FSM	ENSMUSG00000068882.14	ENSMUST00000166411.8	2088	12	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	503.342431457735	7969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCTCACTTTGGACATA	NA	False	NA	22	True	ATTAAA	-23	NA	69691905	69702190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_69692084_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
ENSMUST00000166412.2	chr19	+	447	4	FSM	ENSMUSG00000036372.15	ENSMUST00000166412.2	447	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	1710.34778789448	14518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATGTCCATTCTTAGGG	245	False	NA	33	True	AATAAA	-22	NA	10183396	10185188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_10183489_10183787_10183898_10184527_10184665_10185080
ENSMUST00000166478.8	chrX	-	1720	3	FSM	ENSMUSG00000031422.17	ENSMUST00000166478.8	1720	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1436	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTGTGGTG	NA	False	NA	NA	False	AATAAA	-23	NA	135644435	135633701	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135635251_135636294_135636372_135644341
ENSMUST00000166497.9	chr14	-	2226	9	FSM	ENSMUSG00000025277.15	ENSMUST00000166497.9	2226	9	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_8	7.63216876123687	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGGCAACACCCAGGTA	NA	False	NA	NA	False	AATAAA	-13	NA	14466871	14413009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14441383_14441537_14466809
ENSMUST00000166498.8	chr12	+	2076	12	FSM	ENSMUSG00000021111.16	ENSMUST00000166498.8	2076	12	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_9	335.398664968735	1023	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGCTGTCTCTGTGTTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	105750991	105780328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456
ENSMUST00000166510.8	chr7	+	835	8	FSM	ENSMUSG00000078765.12	ENSMUST00000166510.8	835	8	0	0	0	0	multi-exon	FALSE	canonical	1	16	junction_4	198.242173070398	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTCAATCAAGGTCTGT	NA	False	NA	22	True	AATAAA	-10	NA	30262750	30264776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263527_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUST00000166518.8	chrX	+	800	6	FSM	ENSMUSG00000002014.13	ENSMUST00000166518.8	800	6	0	0	0	0	multi-exon	FALSE	canonical	3	1181	junction_1	165.944569058466	11538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACACGGGGCTCCTGTGT	5432	False	NA	46	True	AATAAA	-28	NA	72830633	72834430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_72830913_72832440_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
ENSMUST00000166526.9	chr17	-	923	8	FSM	ENSMUSG00000061613.14	ENSMUST00000166526.9	923	8	0	0	0	0	multi-exon	FALSE	canonical	3	1007	junction_5	2353.82216310201	11870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877743	31866054	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31871475_31871543_31873952_31874041_31877626
ENSMUST00000166627.8	chr17	+	1211	7	FSM	ENSMUSG00000073423.11	ENSMUST00000166627.8	1211	7	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	162.952702749397	1973	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTACCTATGCCTTC	4917	False	NA	29	True	AATACA	-19	NA	33848063	33850690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_33848191_33848595_33848673_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
ENSMUST00000166735.8	chr12	+	1033	9	FSM	ENSMUSG00000021111.16	ENSMUST00000166735.8	1033	9	0	0	0	0	multi-exon	FALSE	canonical	3	1577	junction_3	94.8235202890085	5765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAGTCTTATTTCTGTGA	NA	False	NA	17	True	AATAAA	-20	NA	105751015	105775968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782
ENSMUST00000166769.8	chr5	-	1878	13	FSM	ENSMUSG00000029145.13	ENSMUST00000166769.8	1878	13	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_12	174.191864205983	2977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGCTGCCTTTGTATCT	NA	False	NA	-1	True	AATAAA	-23	NA	31350483	31344902	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31350115_31350336
ENSMUST00000166804.2	chr10	-	1566	6	FSM	ENSMUSG00000052151.13	ENSMUST00000166804.2	1566	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	24.2602555633695	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCCATGCATGTTGATTT	NA	False	NA	-5	True	TATAAA	-17	NA	79369594	79362268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366816_79369457
ENSMUST00000166860.2	chr1	+	2227	8	FSM	ENSMUSG00000000544.15	ENSMUST00000166860.2	2227	8	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_7	70.4990953770301	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTCTTTGTTCACCCAT	NA	False	NA	9	True	AATAAA	-18	NA	165958035	165994078	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715_165992866_165992923
ENSMUST00000166915.8	chr1	-	503	5	FSM	ENSMUSG00000090553.9	ENSMUST00000166915.8	503	5	0	0	0	0	multi-exon	FALSE	canonical	3	3763	junction_3	447.106461035848	74820	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTTCATTCTGGTGGC	NA	False	NA	-9	True	AATAAA	-30	NA	133538029	133531608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_133531815_133534238_133534318_133536634_133536698_133537455_133537483_133537901
ENSMUST00000166931.2	chr12	-	506	5	FSM	ENSMUSG00000021131.15	ENSMUST00000166931.2	506	5	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_4	3763.79924411491	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTATGATAGCGATCCTG	NA	False	NA	NA	False	NA	NA	NA	80690606	80681130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80689562_80689620_80690537
ENSMUST00000166940.3	chr12	+	2199	11	FSM	ENSMUSG00000021044.16	ENSMUST00000166940.3	2199	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	20.9752234791432	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGACTGTTCCTTCTCA	NA	False	NA	9	True	AATAAA	-22	NA	88327658	88428488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_88327743_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
ENSMUST00000166960.8	chr7	+	747	7	FSM	ENSMUSG00000078765.12	ENSMUST00000166960.8	747	7	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	260.100888545622	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAATCAAGGTCTGTGGT	NA	False	NA	25	True	AATAAA	-13	NA	30262725	30264779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30262775_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264519
ENSMUST00000166983.3	chr5	+	622	3	FSM	ENSMUSG00000061882.13	ENSMUST00000166983.3	622	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGTGTGTTCTGTCCA	NA	False	NA	NA	False	ATTAAA	-27	NA	124068751	124074708	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_124068924_124072134_124072328_124074451
ENSMUST00000167011.8	chr12	-	1681	3	FSM	ENSMUSG00000056459.15	ENSMUST00000167011.8	1681	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	42	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTTAATGTAGAAACTTTA	NA	False	NA	-12	True	ATTAAA	-19	NA	76416238	76395673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_76397048_76402662_76402843_76416111
ENSMUST00000167023.8	chr11	-	1909	14	FSM	ENSMUSG00000025155.16	ENSMUST00000167023.8	1909	14	0	0	0	0	multi-exon	FALSE	canonical	1	70	junction_13	260.320262471546	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGCAGAGATCTCTAGTG	NA	False	NA	-17	True	AATAAA	-16	NA	120687221	120680027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686968
ENSMUST00000167032.2	chr1	+	4125	22	FSM	ENSMUSG00000026288.15	ENSMUST00000167032.2	4125	22	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_4	52.3837661581916	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGCCTCCTGACTGTGT	9370	False	NA	14	True	AATAAA	-15	NA	87603960	87648224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
ENSMUST00000167107.10	chr17	-	2659	4	FSM	ENSMUSG00000055240.18	ENSMUST00000167107.10	2659	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	5.79271573232759	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGACTGATTTTTGCTTTT	NA	False	NA	NA	False	AATAAA	-35	NA	33613615	33599228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_33601561_33605395_33605442_33605658_33605786_33613461
ENSMUST00000167110.8	chr11	-	3547	4	FSM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_3	463.171914327955	1201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCTCCCCCCTCTCCCT	NA	False	NA	-6	True	AATAAA	-33	NA	96714839	96708239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714770
ENSMUST00000167111.6	chr3	-	1418	8	FSM	ENSMUSG00000038975.15	ENSMUST00000167111.6	1418	8	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_5	235.209329261041	6078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6964	False	NA	-2	True	AATAAA	-15	NA	153617782	153612925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561
ENSMUST00000167140.8	chr15	+	1279	3	FSM	ENSMUSG00000071711.13	ENSMUST00000167140.8	1279	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	6.5	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACAAAAACATTTGTGG	NA	False	NA	NA	False	AATAAA	-6	NA	78290911	78298202	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_78290945_78294242_78294865_78297578
ENSMUST00000167143.2	chr11	-	1195	6	FSM	ENSMUSG00000040592.12	ENSMUST00000167143.2	1195	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_4	7.4027022093287	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATCTTCGTGATATCAT	5089	False	NA	-3	True	AATAAA	-17	NA	106205355	106202169	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_106202732_106202832_106202875_106203147_106203267_106203458_106203768_106204486_106204538_106205243
ENSMUST00000167163.8	chr13	-	1654	8	FSM	ENSMUSG00000060147.16	ENSMUST00000167163.8	1654	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	180.800939134278	1210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTCTGCCTCACTGG	8372	False	NA	2	True	AATAAA	-28	NA	34120066	34101900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119555_34119778_34119904
ENSMUST00000167180.8	chr17	+	1324	6	FSM	ENSMUSG00000040771.15	ENSMUST00000167180.8	1324	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	371.627232586634	4463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGGTTTGCACACATGA	NA	False	NA	9	True	AATAAA	-17	NA	48717041	48724282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_48717401_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
ENSMUST00000167182.8	chr6	+	2271	4	FSM	ENSMUSG00000042079.14	ENSMUST00000167182.8	2271	4	0	0	0	0	multi-exon	TRUE	canonical	3	103	junction_1	2299.04709728956	4639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGCACAGCTTATGTACT	NA	False	NA	NA	False	AATAAA	-16	NA	117877300	117902582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_117877468_117894430_117894560_117896059_117896121_117900668
ENSMUST00000167199.3	chr19	+	1162	4	FSM	ENSMUSG00000024683.7	ENSMUST00000167199.3	1162	4	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_3	22.4499443206436	4465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCTTATCTCCGGACCT	161	False	NA	NA	False	NA	NA	NA	11747754	11752324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_11747889_11748165_11748232_11750238_11750388_11751511
ENSMUST00000167246.2	chrX	-	2666	2	FSM	ENSMUSG00000034403.17	ENSMUST00000167246.2	2666	2	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_1	0	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAATAAATAAAT	NA	False	NA	NA	False	AAAACA	-20	NA	98514341	98509373	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_98511921_98514222
ENSMUST00000167256.8	chr13	+	1230	3	FSM	ENSMUSG00000052293.15	ENSMUST00000167256.8	1230	3	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_1	554	1823	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTGGTACTTTGGCAGT	NA	False	NA	NA	False	AATAAA	-20	NA	100788114	100792567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_100788226_100790698_100790792_100791541
ENSMUST00000167264.8	chr8	+	1566	8	FSM	ENSMUSG00000031585.14	ENSMUST00000167264.8	1566	8	0	0	0	0	multi-exon	FALSE	canonical	3	804	junction_1	195.585463338633	5486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTTAATGCTTTGTT	5234	False	NA	9	True	AATAAA	-13	NA	34222069	34267192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_34222158_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
ENSMUST00000167271.9	chr13	-	595	4	FSM	ENSMUSG00000043190.15	ENSMUST00000167271.9	595	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	32.0555074137902	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAGTAATTTTGTTTC	NA	False	NA	-9	True	NA	NA	NA	76166838	76150885	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76166776
ENSMUST00000167316.8	chr5	+	4104	4	FSM	ENSMUSG00000007812.17	ENSMUST00000167316.8	4104	4	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_2	68.241401574769	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAGACTCTTTGTTTTGAG	1299	False	NA	16	True	NA	NA	NA	145168532	145184112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_145168642_145170250_145170413_145179729_145179835_145180384
ENSMUST00000167354.8	chr3	+	1986	15	FSM	ENSMUSG00000027680.16	ENSMUST00000167354.8	1986	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	356.997770529825	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGAAATGTTATTTTGTT	4849	False	NA	12	True	ATTAAA	-15	NA	34074246	34123486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_34074313_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
ENSMUST00000167361.8	chr7	+	860	8	FSM	ENSMUSG00000078765.12	ENSMUST00000167361.8	860	8	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	185.966751472034	908	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTCTGTGGTTTCCTTC	NA	False	NA	32	True	AATAAA	-20	NA	30262774	30264786	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30262834_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
ENSMUST00000167386.8	chr5	-	894	5	FSM	ENSMUSG00000029580.15	ENSMUST00000167386.8	894	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2041.52069546209	780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACGAGCGGTTCCGATGC	8918	False	NA	NA	False	NA	NA	NA	142892480	142890149	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_142890538_142890842_142890906_142890991_142891232_142891318_142891448_142892406
ENSMUST00000167399.2	chr16	+	1421	8	FSM	ENSMUSG00000022871.14	ENSMUST00000167399.2	1421	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	210.181845465457	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTCAACCTGTTGAC	NA	False	NA	14	True	AATAAA	-20	NA	22740494	22758507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22740626_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ENSMUST00000167406.2	chr18	+	2393	8	FSM	ENSMUSG00000091896.9	ENSMUST00000167406.2	2393	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	366.191485539509	1276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTTCACCTGTCTCATC	NA	False	NA	12	True	AATAAA	-23	NA	35904654	35940216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35905066_35926517_35926582_35932893_35932926_35933004_35933083_35933162_35933269_35934326_35934421_35938570_35938875_35938912
ENSMUST00000167415.8	chr6	-	551	3	FSM	ENSMUSG00000086429.10	ENSMUST00000167415.8	551	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	15	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGGAGGTGAGTGATTTAA	NA	False	NA	NA	False	NA	NA	NA	113054152	113044388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_113044780_113048254_113048397_113054134
ENSMUST00000167429.2	chr11	-	1205	3	FSM	ENSMUSG00000020530.15	ENSMUST00000167429.2	1205	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	20.5	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGTGTAGTT	NA	False	NA	NA	False	NA	NA	NA	84761605	84759705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_84760625_84760702_84760899_84761515
ENSMUST00000167435.8	chr7	+	2865	15	FSM	ENSMUSG00000004056.16	ENSMUST00000167435.8	2865	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_14	138.881042181973	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCCCAGTCCACATTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	27291170	27338875	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486_27338705_27338813
ENSMUST00000167436.3	chr11	+	606	4	FSM	ENSMUSG00000060938.15	ENSMUST00000167436.3	606	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	7534.13486886333	289092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCTGTCTTGTGTGGTGT	NA	False	NA	32	True	ATTAAA	-13	NA	68792460	68795359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_68792584_68793095_68793269_68794004_68794146_68795190
ENSMUST00000167493.9	chr7	-	1656	10	FSM	ENSMUSG00000038650.16	ENSMUST00000167493.9	1656	10	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_9	147.871899850621	2155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGGTCCTTGTCGTTC	7992	False	NA	NA	False	ATTAAA	-14	NA	140752770	140740240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140752654
ENSMUST00000167525.3	chr8	-	1764	4	FSM	ENSMUSG00000063253.12	ENSMUST00000167525.3	1764	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	125.913550590166	1671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAAGCTGTTTCAGAG	7417	False	NA	-23	True	TTTAAA	-29	NA	84169136	84161144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84162670_84164181_84164263_84164613_84164686_84169050
ENSMUST00000167624.2	chr17	-	895	7	FSM	ENSMUSG00000024026.14	ENSMUST00000167624.2	895	7	0	0	0	0	multi-exon	FALSE	canonical	3	704	junction_1	947.318613537998	3708	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGGTCTGGGCAGCAAG	NA	False	NA	-17	True	AATAAA	-19	NA	30831633	30811839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_30812049_30813088_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
ENSMUST00000167636.8	chr4	+	1340	9	FSM	ENSMUSG00000006390.16	ENSMUST00000167636.8	1340	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	41.6855790411984	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGATTGTGTGTGTGTG	NA	False	NA	1	True	ATTAAA	-14	NA	118285315	118289810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_118285413_118287692_118287753_118287911_118288103_118288259_118288341_118288462_118288520_118288605_118288712_118288793_118288931_118289094_118289630_118289734
ENSMUST00000167643.4	chr15	-	1145	3	FSM	ENSMUSG00000091780.4	ENSMUST00000167643.4	1145	3	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	1.5	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCATGTGCTCTGTAC	NA	False	NA	-7	True	ATTAAA	-14	NA	89258021	89255839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_89256669_89257625_89257806_89257885
ENSMUST00000167646.9	chr7	-	728	5	FSM	ENSMUSG00000002985.17	ENSMUST00000167646.9	728	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4339.25802989405	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTCTCTGTGAGTGATTC	NA	False	NA	-25	True	AATAAA	-19	NA	19432977	19430191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19430263_19430648_19431029_19431403_19431573_19432112_19432179_19432935
ENSMUST00000167661.7	chr2	-	1151	9	FSM	ENSMUSG00000015790.17	ENSMUST00000167661.7	1151	9	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_7	110.059571937201	3226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	-5	True	AATAAA	-19	NA	26806480	26803394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805782_26805966_26806019_26806268
ENSMUST00000167662.8	chr17	+	2754	10	FSM	ENSMUSG00000001576.16	ENSMUST00000167662.8	2754	10	0	0	0	0	multi-exon	FALSE	canonical	3	380	junction_9	34.0783411176855	795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTGCTGTGACTCTGC	NA	False	NA	11	True	ATTAAA	-15	NA	26780462	26875905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26874040
ENSMUST00000167721.8	chr5	-	1242	5	FSM	ENSMUSG00000029580.15	ENSMUST00000167721.8	1242	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1798.88215289385	4065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTGTCTTTTTTTAATA	8941	False	NA	6	True	NA	NA	NA	142892457	142889255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142891318_142891448_142892406
ENSMUST00000167741.9	chr17	-	1129	4	FSM	ENSMUSG00000024248.15	ENSMUST00000167741.9	1129	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	605.058858477605	31204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGATGTTTTTAGTTT	9947	False	NA	-39	True	AATAAA	-7	NA	83821759	83809362	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_83810167_83811359_83811429_83811528_83811658_83821632
ENSMUST00000167816.8	chr12	+	2657	7	FSM	ENSMUSG00000040877.17	ENSMUST00000167816.8	2657	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	23.6713610367747	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCGTGGTCATGGTG	4850	False	NA	NA	False	NA	NA	NA	108860197	108994378	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_108860240_108863834_108864652_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
ENSMUST00000167875.9	chr2	-	1194	6	FSM	ENSMUSG00000005233.17	ENSMUST00000167875.9	1194	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	347.700215703125	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTTGTAACTCTCTCTT	NA	False	NA	-11	True	NA	NA	NA	69036534	69024239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69036407
ENSMUST00000167885.8	chr9	+	540	4	FSM	ENSMUSG00000007656.14	ENSMUST00000167885.8	540	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2734.39292470315	862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTCCTCTACTGTCCTT	NA	False	NA	26	True	ATTAAA	-13	NA	74945100	74964104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_74945244_74950494_74950581_74959514_74959638_74963916
ENSMUST00000167891.2	chr12	+	1344	6	FSM	ENSMUSG00000021255.18	ENSMUST00000167891.2	1344	6	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_2	30.0905300717684	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCCCAGCACATGGACGGA	NA	False	NA	NA	False	NA	NA	NA	86516890	86565839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
ENSMUST00000167918.8	chr5	-	4232	11	FSM	ENSMUSG00000029405.17	ENSMUST00000167918.8	4232	11	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_10	456.056180749697	1454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTAATCTGAAGTTATA	NA	False	NA	0	True	AATAAA	-33	NA	92231416	92200004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
ENSMUST00000167926.8	chr4	+	1505	9	FSM	ENSMUSG00000028937.15	ENSMUST00000167926.8	1505	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	152.008172066504	1001	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTAGGTGGTCATTTGTC	NA	False	NA	20	True	AATAAA	-25	NA	152270590	152356312	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_152270843_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
ENSMUST00000167930.8	chr7	-	3376	23	FSM	ENSMUSG00000060279.15	ENSMUST00000167930.8	3376	23	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	144.442358888666	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATTGACTGCCCACCCT	NA	False	NA	-3	True	AATAAA	-24	NA	44578914	44549797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44550240_44550410_44550546_44550660_44550731_44550807_44550925_44551014_44551140_44552173_44552263_44552397_44552481_44552567_44552625_44553164_44553326_44553412_44553581_44553660_44553893_44554076_44554175_44555108_44555292_44555494_44555633_44555734_44555904_44556257_44556409_44557147_44557257_44558643_44558746_44559122_44559253_44565264_44565459_44565586_44565730_44565825_44565895_44578703
ENSMUST00000167998.2	chr3	+	1938	12	FSM	ENSMUSG00000028048.12	ENSMUST00000167998.2	1938	12	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	111.217603696091	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGTGCTATCTGTGAC	NA	False	NA	3	True	ATTAAA	-13	NA	89110246	89115988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89110394_89110498_89110668_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114759_89115130_89115295_89115618_89115736_89115823
ENSMUST00000168015.8	chr3	-	3460	21	FSM	ENSMUSG00000002227.16	ENSMUST00000168015.8	3460	21	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_20	265.434944948852	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	-25	True	AAGAAA	-21	NA	104725621	104702151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725473_104725573
ENSMUST00000168036.8	chr10	-	2693	15	FSM	ENSMUSG00000020166.16	ENSMUST00000168036.8	2693	15	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_13	136.561565692876	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTGGCTTTGATTTGAA	NA	False	NA	-1	True	AATAAA	-23	NA	116417416	116321065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116384937_116385081_116417357
ENSMUST00000168062.8	chr3	+	1943	13	FSM	ENSMUSG00000001416.14	ENSMUST00000168062.8	1943	13	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_3	126.158630303281	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCGGCAAACTGGTGCT	3876	False	NA	NA	False	NA	NA	NA	88204494	88228814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320
ENSMUST00000168083.2	chr19	-	603	5	FSM	ENSMUSG00000025204.11	ENSMUST00000168083.2	603	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_4	2211.89753096747	20871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGCTCTGGTTTCTGTGT	1995	False	NA	-20	True	AATAAA	-16	NA	44543858	44538691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_44538852_44541136_44541293_44542107_44542208_44543369_44543454_44543755
ENSMUST00000168099.9	chr1	-	2590	19	FSM	ENSMUSG00000025968.17	ENSMUST00000168099.9	2590	19	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_18	163.056757519704	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATTTAAAGTTATACTAT	NA	False	NA	NA	False	NA	NA	NA	63215891	63182893	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215586
ENSMUST00000168106.8	chr3	+	2890	6	FSM	ENSMUSG00000015749.13	ENSMUST00000168106.8	2890	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	657.373987924682	1315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGGACGGGCAGCGCTG	NA	False	NA	-16	True	NA	NA	NA	95836697	95854581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95836963_95841220_95841371_95844335_95844508_95845193_95845352_95851618_95851674_95852491
ENSMUST00000168115.8	chr11	-	1771	11	FSM	ENSMUSG00000020528.15	ENSMUST00000168115.8	1771	11	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_10	57.9565354382058	741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGGATAGTTGTTCT	216	False	NA	-3	True	AATAAA	-26	NA	61652914	61620475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61652779
ENSMUST00000168166.8	chr9	+	3944	4	FSM	ENSMUSG00000007656.14	ENSMUST00000168166.8	3944	4	0	0	0	0	multi-exon	FALSE	canonical	3	3551	junction_1	1114.80232428096	23573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTTATTGATTTTAAT	NA	False	NA	1	True	AATAAA	-11	NA	74944895	74967576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_74945002_74945188_74945244_74959514_74959638_74963916
ENSMUST00000168176.8	chr2	+	1806	5	FSM	ENSMUSG00000032679.13	ENSMUST00000168176.8	1806	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	94.0063162771524	904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCAGATTATCTTGAC	NA	False	NA	NA	False	ATTAAA	-15	NA	103926145	103945694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_103926273_103928069_103928190_103934515_103934595_103941084_103941190_103944319
ENSMUST00000168186.8	chr12	+	2436	21	FSM	ENSMUSG00000021111.16	ENSMUST00000168186.8	2436	21	0	0	0	0	multi-exon	FALSE	canonical	3	846	junction_12	380.482125072913	3410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTAGTTAAAGTCTGTAA	NA	False	NA	NA	False	ATTAAA	-13	NA	105750962	105801152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968
ENSMUST00000168194.3	chr7	+	1076	6	FSM	ENSMUSG00000025470.12	ENSMUST00000168194.3	1076	6	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	28.032837887021	1278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATCTGTTCTTCTTCATG	NA	False	NA	19	True	AATAAA	-16	NA	139616324	139620515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238_139619359_139620155
ENSMUST00000168218.8	chr11	-	1511	3	FSM	ENSMUSG00000043284.13	ENSMUST00000168218.8	1511	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	10	5162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGTTCTCTTTTCTGCC	7583	False	NA	-5	True	ATTAAA	-17	NA	60769864	60755277	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_60756175_60766585_60766874_60769538
ENSMUST00000168266.8	chr2	+	2721	17	FSM	ENSMUSG00000027067.17	ENSMUST00000168266.8	2721	17	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	374.603436149483	1410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGATGTCCTTATGTCTC	NA	False	NA	20	True	AATAAA	-16	NA	84867794	84877450	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_84867875_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
ENSMUST00000168345.6	chr3	+	1295	7	FSM	ENSMUSG00000091512.6	ENSMUST00000168345.6	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_3	73.5090697351921	2249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTCTGTATAGGCCT	80	False	NA	2	True	AATAAA	-22	NA	137624286	137634526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_137624425_137624633_137624680_137625681_137625717_137630872_137630932_137632569_137632704_137633107_137633172_137633707
ENSMUST00000168413.8	chr14	+	1844	13	FSM	ENSMUSG00000004561.15	ENSMUST00000168413.8	1844	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	44.5586380202787	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAATAGAGGTGGATGTT	NA	False	NA	NA	False	AATAAA	-8	NA	52122332	52129317	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_52122481_52122607_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126855_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
ENSMUST00000168419.3	chr18	-	2152	11	FSM	ENSMUSG00000024644.18	ENSMUST00000168419.3	2152	11	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_9	38.6638073655454	2603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTGCCGTGGTCTGACT	NA	False	NA	-2	True	AATAAA	-21	NA	84700184	84685593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832_84696996_84699059_84699204_84699962
ENSMUST00000168434.8	chr11	-	3056	14	FSM	ENSMUSG00000020530.15	ENSMUST00000168434.8	3056	14	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_13	138.817874810357	1014	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCCTCTTCCTTCCTCA	NA	False	NA	0	True	AATAAA	-16	NA	84761643	84723186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761430
ENSMUST00000168457.3	chr7	+	1227	2	FSM	ENSMUSG00000047751.10	ENSMUST00000168457.3	1227	2	0	0	0	0	multi-exon	FALSE	canonical	3	805	junction_1	0	5133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTGAATGAATTCGGAC	NA	False	NA	NA	False	AATAAA	-20	NA	139523701	139525025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_139524343_139524439
ENSMUST00000168463.8	chr12	-	431	4	FSM	ENSMUSG00000091803.8	ENSMUST00000168463.8	431	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	143.25501736414	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTATGCTTTTCAGTCT	995	False	NA	-6	True	ATTAAA	-14	NA	81531887	81518866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_81518946_81521360_81521424_81527704_81527777_81531670
ENSMUST00000168465.9	chr10	-	1748	14	FSM	ENSMUSG00000001120.16	ENSMUST00000168465.9	1748	14	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	17.9674261475277	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTCTGACTTCTCTCT	NA	False	NA	-4	True	AATAAA	-17	NA	76661703	76597691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606874_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693
ENSMUST00000168503.8	chr4	-	1240	6	FSM	ENSMUSG00000055401.15	ENSMUST00000168503.8	1240	6	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_5	226.118552976088	3672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTTCATCCTGTTTG	NA	False	NA	54	True	NA	NA	NA	148236592	148230172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236469
ENSMUST00000168507.2	chr17	+	2400	8	FSM	ENSMUSG00000005936.20	ENSMUST00000168507.2	2400	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	205.362993705471	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTCCAGTATTGAAGAACAA	NA	False	NA	10	True	AATAAA	-21	NA	29172189	29186911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29172318_29176852_29177032_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
ENSMUST00000168520.3	chr10	-	1043	6	FSM	ENSMUSG00000025436.13	ENSMUST00000168520.3	1043	6	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	12.3515181253156	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTATTTTTTGGCTCTT	NA	False	NA	0	True	AATAAA	-25	NA	126737217	126723117	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_126723564_126727508_126727593_126730093_126730232_126734755_126734838_126735449_126735496_126736970
ENSMUST00000168584.9	chr14	+	1498	10	FSM	ENSMUSG00000021916.17	ENSMUST00000168584.9	1498	10	0	0	0	0	multi-exon	TRUE	canonical	3	45	junction_1	28.2055944017416	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTATTTGCTTCCCCATTT	3526	False	NA	8	True	AATAAA	-19	NA	30723356	30733947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_30723386_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
ENSMUST00000168697.4	chr10	-	495	1	FSM	ENSMUSG00000069682.7	ENSMUST00000168697.4	495	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1119	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAGAAGCAACAAGAAAATA	NA	False	NA	-58	True	NA	NA	NA	29575286	29574791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_29574800_29575300
ENSMUST00000168774.8	chr16	-	3773	13	FSM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	460.814677138941	1065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGCATTCCTGCAACCTG	6495	False	NA	-20	True	AATAAA	-15	NA	22255264	22200065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382_22230671_22231594_22231725_22240568_22240623_22254626_22254678_22254769_22254818_22254950_22255039_22255187
ENSMUST00000168776.8	chr1	+	3267	13	FSM	ENSMUSG00000116048.2	ENSMUST00000168776.8	3267	13	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	258.994798317564	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406782	93437455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_93406903_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
ENSMUST00000168805.8	chr15	+	827	5	FSM	ENSMUSG00000001289.13	ENSMUST00000168805.8	827	5	0	0	0	0	multi-exon	FALSE	canonical	3	835	junction_1	33.0709464636257	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCGGCAATGGCCTCCTGG	386	False	NA	-52	True	AATGAA	-40	NA	102234602	102239843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102234696_102234867_102235285_102236956_102237032_102237146_102237253_102239707
ENSMUST00000168811.2	chr15	+	1464	11	FSM	ENSMUSG00000078954.10	ENSMUST00000168811.2	1464	11	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_5	23.8748821986623	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGGGGGTTTTGTGCTT	1022	False	NA	9	True	ATTAAA	-16	NA	84617092	84656405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
ENSMUST00000168813.2	chr14	-	441	2	FSM	ENSMUSG00000013701.14	ENSMUST00000168813.2	441	2	0	0	0	0	multi-exon	FALSE	canonical	3	4071	junction_1	0	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATTTCCATTCTCTCTA	NA	False	NA	NA	False	NA	NA	NA	31923836	31920780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_31920985_31923599
ENSMUST00000168815.8	chr15	-	612	3	FSM	ENSMUSG00000044678.12	ENSMUST00000168815.8	612	3	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_2	7.5	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTTGGTTTGACTTCTG	1229	False	NA	-2	True	ATTAAA	-18	NA	74671382	74668722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_74669121_74670383_74670483_74671267
ENSMUST00000168817.2	chr1	-	1298	3	FSM	ENSMUSG00000059498.14	ENSMUST00000168817.2	1298	3	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	7.5	1092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATCTCCTTTTGGTGAC	NA	False	NA	-7	True	AATAAA	-24	NA	170885623	170878742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_170879422_170881507_170881763_170885259
ENSMUST00000168828.3	chr15	-	2298	8	FSM	ENSMUSG00000000552.11	ENSMUST00000168828.3	2298	8	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	68.2405708519799	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGGACTCAGACTGTCT	6919	False	NA	-12	True	AATAAA	-24	NA	103248520	103222321	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_103223653_103223787_103223884_103224053_103224224_103224308_103224552_103226375_103226539_103228716_103228828_103241491_103241629_103248473
ENSMUST00000168846.3	chr15	-	1652	12	FSM	ENSMUSG00000067713.8	ENSMUST00000168846.3	1652	12	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_11	39.9075377622816	2277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTTGATTTCTGC	9349	False	NA	-4	True	ATTAAA	-22	NA	98729402	98710677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98729310
ENSMUST00000168882.9	chr18	+	2254	14	FSM	ENSMUSG00000025423.17	ENSMUST00000168882.9	2254	14	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	369.279756365738	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTTCTAATTAAAGATG	8510	False	NA	13	True	AATAAA	-26	NA	77153514	77240813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_77153604_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
ENSMUST00000168891.8	chr16	+	2203	10	FSM	ENSMUSG00000022884.17	ENSMUST00000168891.8	2203	10	0	0	0	0	multi-exon	FALSE	canonical	3	563	junction_3	486.088189935799	6171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAAAATTACCAAGA	5774	False	NA	NA	False	NA	NA	NA	22926228	22932867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
ENSMUST00000168900.3	chr3	+	582	5	FSM	ENSMUSG00000042747.13	ENSMUST00000168900.3	582	5	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	789.56613877496	5351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTCTTTGTAGCTGTG	7591	False	NA	7	True	AATAAA	-1	NA	89153740	89157016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89153901_89154087_89154240_89154371_89154436_89156380_89156448_89156877
ENSMUST00000168967.9	chr3	-	1755	8	FSM	ENSMUSG00000028273.16	ENSMUST00000168967.9	1755	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	98.4102201428867	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTTGCTCTATACTTGTTT	NA	False	NA	NA	False	AATAAA	-44	NA	142097611	142008080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_142009183_142009703_142009741_142010057_142010231_142010465_142010484_142017883_142017976_142020166_142020210_142058494_142058647_142097473
ENSMUST00000168972.2	chr14	+	1573	6	FSM	ENSMUSG00000052334.12	ENSMUST00000168972.2	1573	6	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_4	33.7911230946827	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	41765951	41825776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_41766287_41818127_41818291_41819245_41819378_41820058_41820192_41820192_41820240_41825013
ENSMUST00000169008.8	chr9	+	562	6	FSM	ENSMUSG00000032301.14	ENSMUST00000169008.8	562	6	0	0	0	0	multi-exon	FALSE	canonical	3	1724	junction_4	75.8957179292745	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTGTTCTGCTTTA	NA	False	NA	NA	False	AATAAA	-8	NA	54858088	54862316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164
ENSMUST00000169032.8	chr1	-	2283	9	FSM	ENSMUSG00000025950.17	ENSMUST00000169032.8	2283	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_8	288.761904516506	666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTTATTATGTGTTTT	NA	False	NA	-8	True	ATTAAA	-26	NA	65225638	65197776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65225463
ENSMUST00000169050.8	chr15	-	479	7	FSM	ENSMUSG00000022247.13	ENSMUST00000169050.8	479	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1155.46043011241	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCTGAATTAAAGATGACT	NA	False	NA	NA	False	NA	NA	NA	10485995	10479223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483449_10485440_10485503_10485820
ENSMUST00000169068.8	chr9	-	1364	6	FSM	ENSMUSG00000040813.17	ENSMUST00000169068.8	1364	6	0	0	0	0	multi-exon	TRUE	canonical	3	151	junction_5	120.179865202121	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTGGTTTTTGTCTG	8113	False	NA	0	True	AATAAA	-28	NA	106562881	106535944	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106562833
ENSMUST00000169104.3	chr12	+	2626	6	FSM	ENSMUSG00000037669.16	ENSMUST00000169104.3	2626	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	96.0791340510519	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTGTGGTCTGATC	NA	False	NA	18	True	AATAAA	-18	NA	8258146	8335759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_8258205_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8333899
ENSMUST00000169215.8	chr14	+	984	5	FSM	ENSMUSG00000094021.8	ENSMUST00000169215.8	984	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	8	235	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGTCAGAAAACACAGCAG	NA	False	NA	NA	False	AATAAA	-3	NA	15424802	15433238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_15424996_15425726_15425890_15426844_15426977_15427652_15427837_15432926
ENSMUST00000169308.8	chr17	+	1026	5	FSM	ENSMUSG00000025731.17	ENSMUST00000169308.8	1026	5	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_1	48.8287824955732	1707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGGGAATACCTGGGAG	7195	False	NA	39	True	AATAAA	-40	NA	26094474	26096143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634
ENSMUST00000169309.3	chr10	+	1277	10	FSM	ENSMUSG00000035351.17	ENSMUST00000169309.3	1277	10	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	172.048514547568	4210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTCCTATTGTG	NA	False	NA	10	True	AATAAA	-18	NA	87982938	88014250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_87983032_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
ENSMUST00000169314.9	chr13	+	3027	5	FSM	ENSMUSG00000058258.15	ENSMUST00000169314.9	3027	5	0	0	0	0	multi-exon	TRUE	canonical	3	487	junction_1	56.3576747213722	1032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAGGTAAAATACTTGT	NA	False	NA	75	True	TATAAA	-6	NA	8935536	8942487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_8936033_8936767_8936941_8937520_8937614_8937958_8938090_8940353
ENSMUST00000169358.8	chr7	-	396	3	FSM	ENSMUSG00000006095.13	ENSMUST00000169358.8	396	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_2	386	685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGCAAGTCTCTTGATT	NA	False	NA	-7	True	NA	NA	NA	29926425	29923557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_29923773_29923897_29923971_29926317
ENSMUST00000169390.8	chr5	+	1833	6	FSM	ENSMUSG00000029326.14	ENSMUST00000169390.8	1833	6	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_1	20.2918702932973	1433	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTTTCATACAGACGT	NA	False	NA	15	True	AATAAA	-15	NA	100187843	100216619	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
ENSMUST00000169407.9	chr5	-	3276	5	FSM	ENSMUSG00000029634.16	ENSMUST00000169407.9	3276	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	52.1488254901297	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGACTGTGTGCAAACTTA	2835	False	NA	NA	False	ATTAAA	-24	NA	146157711	146146005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146157547
ENSMUST00000169418.8	chrX	-	1782	3	FSM	ENSMUSG00000031422.17	ENSMUST00000169418.8	1782	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	1462	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTGTGGTG	NA	False	NA	NA	False	AATAAA	-23	NA	135642101	135633701	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_135635251_135640553_135640644_135641958
ENSMUST00000169426.8	chr3	+	915	4	FSM	ENSMUSG00000015749.13	ENSMUST00000169426.8	915	4	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	725.485737665156	849	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTGTAATATGAAATGGCA	NA	False	NA	82	True	TATAAA	-17	NA	95836594	95852947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95836963_95845315_95845352_95851618_95851674_95852491
ENSMUST00000169437.9	chr7	-	2274	5	FSM	ENSMUSG00000070436.13	ENSMUST00000169437.9	2274	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	667.492462504259	2984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAAGCCTGTGATTTATG	NA	False	NA	NA	False	ATTAAA	-30	NA	99002321	98994582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002088
ENSMUST00000169448.2	chr9	+	610	2	FSM	ENSMUSG00000007656.14	ENSMUST00000169448.2	610	2	0	0	0	0	multi-exon	FALSE	canonical	3	3551	junction_1	0	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74944958	74945755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_74945002_74945188
ENSMUST00000169492.8	chr9	+	3963	4	FSM	ENSMUSG00000007656.14	ENSMUST00000169492.8	3963	4	0	0	0	0	multi-exon	FALSE	canonical	3	3551	junction_1	1114.80232428096	23544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGTTTTGTCTTATTT	NA	False	NA	20	True	AATAAA	-30	NA	74944895	74967595	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_74945002_74945188_74945244_74959514_74959638_74963916
ENSMUST00000169540.8	chrX	-	1563	3	FSM	ENSMUSG00000079349.10	ENSMUST00000169540.8	1563	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	8.5	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTTTAGTTTCTTTTT	NA	False	NA	0	True	AATAAA	-18	NA	153844549	153836056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_153837456_153838390_153838480_153844474
ENSMUST00000169543.8	chr17	+	778	5	FSM	ENSMUSG00000044279.16	ENSMUST00000169543.8	778	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	66.6520817379322	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTTAGCTGTAAGCTCT	1578	False	NA	NA	False	AATAAA	-30	NA	57369282	57372917	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57369374_57369594_57369767_57370636_57370699_57372089_57372234_57372608
ENSMUST00000169550.8	chr4	+	2660	10	FSM	ENSMUSG00000059939.14	ENSMUST00000169550.8	2660	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_5	55.5417760689095	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	8271	False	NA	20	True	NA	NA	NA	156194454	156211720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
ENSMUST00000169591.8	chr17	+	2242	13	FSM	ENSMUSG00000048440.17	ENSMUST00000169591.8	2242	13	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_1	14.6806278249036	613	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCATGTCTTGGTTCCATT	NA	False	NA	21	True	NA	NA	NA	32755531	32770772	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_32755630_32755968_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
ENSMUST00000169609.2	chr9	-	1677	6	FSM	ENSMUSG00000032018.15	ENSMUST00000169609.2	1677	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	75.9910521048367	218	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGCTCTTCCATAATTC	NA	False	NA	-4	True	AATAAA	-29	NA	42175496	42166028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42173346_42173428_42175417
ENSMUST00000169611.4	chr17	+	3674	13	FSM	ENSMUSG00000023921.10	ENSMUST00000169611.4	3674	13	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_5	30.8112533554436	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTTCCTGTTGTGTGTTC	NA	False	NA	NA	False	TATAAA	-23	NA	41245575	41272879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_41245671_41247934_41248354_41249405_41249774_41252206_41252365_41254697_41254870_41257912_41258162_41262645_41262758_41263669_41263786_41265992_41266109_41267097_41267230_41269220_41269369_41269592_41269761_41271458
ENSMUST00000169613.4	chr19	-	821	7	FSM	ENSMUSG00000060803.7	ENSMUST00000169613.4	821	7	0	0	0	0	multi-exon	FALSE	canonical	3	1999	junction_6	828.939215034626	16076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	4087985	4085406	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087862
ENSMUST00000169673.3	chr19	+	2757	10	FSM	ENSMUSG00000024989.16	ENSMUST00000169673.3	2757	10	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	107.147988119351	1113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043489	38062869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_38043766_38045857_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUST00000169681.3	chr15	+	3854	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	8253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	49	True	AATAAA	-19	NA	101982207	102005608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
ENSMUST00000169712.3	chr10	+	1991	7	FSM	ENSMUSG00000019992.9	ENSMUST00000169712.3	1991	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_5	12.6150263134442	413	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTGAGTATTTAACAT	NA	False	NA	7	True	AATAAA	-14	NA	20223515	20237050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_20223670_20224080_20224182_20228569_20228675_20229112_20229226_20229775_20230012_20233000_20233513_20236280
ENSMUST00000169826.3	chr14	+	519	6	FSM	ENSMUSG00000025290.18	ENSMUST00000169826.3	519	6	0	0	0	0	multi-exon	FALSE	canonical	3	4464	junction_5	3607.86166031903	112601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTCCTACACGTCTG	NA	False	NA	4	True	AATAAA	-3	NA	24540785	24545913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545497_24545518_24545842
ENSMUST00000169828.8	chr11	-	3530	4	FSM	ENSMUSG00000038615.18	ENSMUST00000169828.8	3530	4	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_3	612.843826399153	1191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCTCCCCCCTCTCCCT	NA	False	NA	-6	True	AATAAA	-33	NA	96714953	96708239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714901
ENSMUST00000169860.8	chr9	-	1824	12	FSM	ENSMUSG00000062270.15	ENSMUST00000169860.8	1824	12	0	0	0	0	multi-exon	FALSE	canonical	3	3415	junction_7	1167.30044572017	24159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGCCGTGTTATCAA	NA	False	NA	NA	False	AATAAA	-24	NA	89996827	89973717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
ENSMUST00000169861.9	chr19	+	3664	9	FSM	ENSMUSG00000024976.15	ENSMUST00000169861.9	3664	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	127.929668177479	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGGATTTTTGCTTTTC	3358	False	NA	NA	False	ATTAAA	-20	NA	53932736	54021298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_53932834_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
ENSMUST00000169921.8	chr10	-	2120	16	FSM	ENSMUSG00000020166.16	ENSMUST00000169921.8	2120	16	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_15	117.305110242005	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTGAAGATCCTTC	NA	False	NA	-12	True	AATAAA	-19	NA	116417416	116321691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385011_116417357
ENSMUST00000169938.8	chr12	+	4356	21	FSM	ENSMUSG00000021111.16	ENSMUST00000169938.8	4356	21	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_6	426.918657357581	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATAGTTGGCTGGTTTC	NA	False	NA	12	True	AATAAA	-18	NA	105751001	105805203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023
ENSMUST00000170000.4	chr9	-	1773	5	FSM	ENSMUSG00000042396.11	ENSMUST00000170000.4	1773	5	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_3	15.188400179084	1716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGTGTCTCTTTATTTT	NA	False	NA	-4	True	ATTAAA	-12	NA	48406597	48400000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48406454
ENSMUST00000170010.3	chr19	-	758	3	FSM	ENSMUSG00000024844.16	ENSMUST00000170010.3	758	3	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_2	2345.5	9693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTGGTGTTCTGTGTCA	8986	False	NA	-9	True	AATAAA	-14	NA	5416391	5414668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5415187_5415845_5415985_5416290
ENSMUST00000170070.3	chr17	-	3208	22	FSM	ENSMUSG00000019214.15	ENSMUST00000170070.3	3208	22	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_21	77.5978060329916	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTGGGGAGTGTCAGT	5683	False	NA	NA	False	NA	NA	NA	25946384	25937899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946098_25946220
ENSMUST00000170103.3	chr17	+	925	2	FSM	ENSMUSG00000090952.3	ENSMUST00000170103.3	925	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCTGATTTCATTTTC	3477	False	NA	19	True	NA	NA	NA	33978965	33980844	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_33979562_33980515
ENSMUST00000170122.4	chr3	-	345	4	FSM	ENSMUSG00000090733.7	ENSMUST00000170122.4	345	4	0	0	0	0	multi-exon	FALSE	canonical	3	13930	junction_3	2970.01597451746	141958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120958	90119977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120916
ENSMUST00000170134.9	chr15	-	2984	17	FSM	ENSMUSG00000022391.17	ENSMUST00000170134.9	2984	17	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_16	270.05335121046	814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGAAGCTTCTTTCATCAA	NA	False	NA	-4	True	AATAAA	-25	NA	81614102	81588448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613417_81613466_81613912
ENSMUST00000170142.8	chr6	-	2133	10	FSM	ENSMUSG00000029821.16	ENSMUST00000170142.8	2133	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	6.09998988058258	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTAGTTGGCTGTTCTAT	8766	False	NA	-2	True	ATTAAA	-16	NA	50238749	50184382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_50185187_50193329_50193404_50196216_50196419_50197968_50198097_50199715_50199881_50204258_50204380_50206265_50206438_50222909_50223103_50228255_50228494_50238713
ENSMUST00000170202.9	chr11	-	1078	8	FSM	ENSMUSG00000020444.20	ENSMUST00000170202.9	1078	8	0	0	0	0	multi-exon	FALSE	canonical	3	619	junction_7	90.3745042609262	4342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGTGTCACAGCCCTCC	1470	False	NA	-20	True	AATAAA	-13	NA	59082778	59074700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_59075014_59075261_59075348_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082576
ENSMUST00000170206.2	chr15	-	294	1	FSM	ENSMUSG00000092014.2	ENSMUST00000170206.2	294	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	263	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATTTCAATCAGTCATAAA	NA	False	NA	NA	False	NA	NA	NA	99708463	99708169	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_99708200_99708500
ENSMUST00000170241.8	chr4	+	1079	5	FSM	ENSMUSG00000028478.19	ENSMUST00000170241.8	1079	5	0	0	0	0	multi-exon	FALSE	canonical	3	1242	junction_1	75.1631558677521	12863	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACATGAAGCATCTTTAAT	8196	False	NA	20	True	AATAAA	-20	NA	44012642	44032845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_44013009_44018812_44018851_44019873_44019992_44025448_44025561_44032400
ENSMUST00000170263.9	chr8	+	2096	6	FSM	ENSMUSG00000031562.17	ENSMUST00000170263.10	2096	6	0	0	0	0	multi-exon	TRUE	canonical	3	319	junction_1	42.4480859403578	1370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	10	True	ATTAAA	-16	NA	48562992	48594700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
ENSMUST00000170303.2	chr11	-	991	8	FSM	ENSMUSG00000091228.2	ENSMUST00000170303.2	991	8	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_4	2495.73089372183	34836	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTGCAGTGTTCAGT	613	False	NA	-33	True	NA	NA	NA	93859119	93840644	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93851493_93851607_93854052_93854155_93856633_93856764_93859046
ENSMUST00000170308.8	chr9	+	429	4	FSM	ENSMUSG00000007656.14	ENSMUST00000170308.8	429	4	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	2500.61556865949	17109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATTTCTCTGACTACG	NA	False	NA	42	True	ATTAAA	-29	NA	74944958	74964120	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_74945006_74945188_74945244_74959514_74959638_74963916
ENSMUST00000170331.8	chr14	-	777	4	FSM	ENSMUSG00000013701.14	ENSMUST00000170331.8	777	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	1998.03753718492	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTCCAAATTCAGGCCA	NA	False	NA	NA	False	NA	NA	NA	31923826	31902247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_31902628_31911100_31911212_31920925_31920985_31923599
ENSMUST00000170334.8	chr15	-	2063	9	FSM	ENSMUSG00000022617.16	ENSMUST00000170334.8	2063	9	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_3	35.8355619462009	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGACTTAAGTGACATTC	1219	False	NA	NA	False	AATAAA	-30	NA	89314063	89310562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251
ENSMUST00000170335.4	chr18	-	965	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	333011	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGACCTGCAGAGATGG	7423	False	NA	NA	False	NA	NA	NA	61393043	61392078	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_61392100_61393000
ENSMUST00000170382.5	chr6	-	494	5	FSM	ENSMUSG00000091625.9	ENSMUST00000170382.5	494	5	0	0	0	0	multi-exon	TRUE	canonical	3	1056	junction_2	222.021395365402	8397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGATTTGATTTATTATG	NA	False	NA	NA	False	AATAAA	-16	NA	56681677	56678047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_56678275_56679080_56679154_56679990_56680019_56680298_56680395_56681607
ENSMUST00000170468.8	chr5	-	1510	6	FSM	ENSMUSG00000029507.17	ENSMUST00000170468.8	1510	6	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	177.715052823333	605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGCCTATTTTCCTT	NA	False	NA	0	True	ATTAAA	-21	NA	110928481	110921533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928427
ENSMUST00000170491.8	chr17	-	2433	6	FSM	ENSMUSG00000024327.17	ENSMUST00000170491.8	2433	6	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_4	31.8282893036996	957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCAGCCTTTGTCTTTA	NA	False	NA	-6	True	AATAAA	-22	NA	34250622	34247246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539
ENSMUST00000170502.2	chr11	-	725	4	FSM	ENSMUSG00000035086.14	ENSMUST00000170502.2	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_1	27.6445694888204	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCCTTCCTTTTTGCTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	101193075	101186732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_101187143_101189834_101189903_101192553_101192683_101192957
ENSMUST00000170552.6	chr3	+	1968	20	FSM	ENSMUSG00000027751.14	ENSMUST00000170552.6	1968	20	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_19	131.739312801442	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTCTTTGTCAGGGTAAA	NA	False	NA	NA	False	TATAAA	-22	NA	54600525	54624258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608907_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624058
ENSMUST00000170629.3	chr15	+	2641	12	FSM	ENSMUSG00000022385.12	ENSMUST00000170629.3	2641	12	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_1	58.9672832668062	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTATAAAGTTTATTAAA	7137	False	NA	-13	True	ATTAAA	-18	NA	85743945	85760731	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_85743996_85744204_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
ENSMUST00000170667.8	chr6	-	1990	11	FSM	ENSMUSG00000035378.18	ENSMUST00000170667.8	1990	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	64.1530201939083	516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGGTGTAAATAATTAGA	NA	False	NA	-2	True	AATAAA	-18	NA	100648118	100550042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_100550750_100588696_100588818_100607843_100607968_100609199_100609254_100613928_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
ENSMUST00000170705.8	chr8	+	1634	8	FSM	ENSMUSG00000031585.14	ENSMUST00000170705.8	1634	8	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_1	317.681974204855	5294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTTAATGCTTTGTT	5025	False	NA	9	True	AATAAA	-13	NA	34221860	34267192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_34222017_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
ENSMUST00000170715.8	chr17	+	998	6	FSM	ENSMUSG00000044533.16	ENSMUST00000170715.8	998	6	0	0	0	0	multi-exon	FALSE	canonical	3	3280	junction_1	2855.80020309545	470499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTATGTTTTTTTTTGTCTG	6190	False	NA	1	True	AATAAA	-20	NA	24939036	24940900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940596_24940689_24940776
ENSMUST00000170720.2	chr12	-	704	4	FSM	ENSMUSG00000021036.11	ENSMUST00000170720.2	704	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	261.40942769703	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTATTCTACTTGTGAA	NA	False	NA	-11	True	ATTAAA	-14	NA	87375387	87356412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_87356795_87359471_87359602_87360824_87360961_87375331
ENSMUST00000170781.2	chr3	-	1111	4	FSM	ENSMUSG00000028133.18	ENSMUST00000170781.2	1111	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	45.4043561297323	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATTTGTTTTCATGTTTA	NA	False	NA	-3	True	ATTAAA	-13	NA	120965337	120949494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_120949952_120950049_120950166_120952463_120952905_120965240
ENSMUST00000170788.9	chr3	+	1730	7	FSM	ENSMUSG00000027777.16	ENSMUST00000170788.9	1730	7	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	136.891684675634	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTCCTTTTGCTCACTAA	NA	False	NA	22	True	AATAAA	-24	NA	68479577	68533797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_68479997_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
ENSMUST00000170805.9	chr16	+	1520	8	FSM	ENSMUSG00000022871.14	ENSMUST00000170805.9	1520	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	163.600059877241	1977	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACTGGAAATGAGACTAA	NA	False	NA	35	True	AATAAA	-41	NA	22737131	22758528	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22737341_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ENSMUST00000170810.8	chr10	-	1341	8	FSM	ENSMUSG00000061904.13	ENSMUST00000170810.8	1341	8	0	0	0	0	multi-exon	FALSE	canonical	1	85	junction_6	1787.71823557179	1279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTATGAGTTTGTTATT	NA	False	NA	-5	True	AATAAA	-15	NA	90959865	90952653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90958068_90958194_90959419_90959569_90959777
ENSMUST00000170811.8	chr18	+	2886	8	FSM	ENSMUSG00000060450.15	ENSMUST00000170811.8	2886	8	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_3	44.1310663864829	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGACACGGTGTCCTGT	926	False	NA	21	True	AATAAA	-26	NA	38429687	38450900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_38429852_38432806_38432980_38433481_38433644_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
ENSMUST00000170828.2	chrX	+	452	5	FSM	ENSMUSG00000079435.10	ENSMUST00000170828.2	452	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	5056.48450012457	244149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTCTCCTGTTGAGTGG	NA	False	NA	81	True	ATTAAA	-22	NA	133486438	133488811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_133486469_133486826_133486933_133487260_133487328_133488199_133488323_133488685
ENSMUST00000170831.2	chr12	+	295	2	FSM	ENSMUSG00000021111.16	ENSMUST00000170831.2	295	2	0	0	0	0	multi-exon	FALSE	canonical	3	1768	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAGTCTTATTTCTGTGA	NA	False	NA	17	True	AATAAA	-20	NA	105775582	105775968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_105775692_105775782
ENSMUST00000170836.4	chr13	+	2911	8	FSM	ENSMUSG00000015671.12	ENSMUST00000170836.4	2911	8	0	0	0	0	multi-exon	FALSE	canonical	3	4380	junction_5	234.832723791352	39548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCTGAGTGGTGGTTGC	NA	False	NA	7	True	ATTAAA	-18	NA	14787824	14802221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
ENSMUST00000170862.8	chr18	+	2259	11	FSM	ENSMUSG00000024576.15	ENSMUST00000170862.8	2259	11	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_5	708.334701959462	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTGTTGCTTAGATAA	493	False	NA	-31	True	NA	NA	NA	61688409	61721253	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
ENSMUST00000170908.8	chr2	+	1342	5	FSM	ENSMUSG00000023330.13	ENSMUST00000170908.8	1342	5	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	15.4495145554804	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTCGCCCTTACCTTTCG	7279	False	NA	25	True	ATTAAA	-23	NA	125994060	126007196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_125994135_125996465_125996781_126000329_126000474_126001689_126001949_126006646
ENSMUST00000170953.3	chr7	-	589	6	FSM	ENSMUSG00000090862.4	ENSMUST00000170953.3	589	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4075.24362952695	331094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTGGTTCTTTCTGC	NA	False	NA	0	True	AATAAA	-20	NA	115933430	115930739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933134_115933184_115933319
ENSMUST00000171031.8	chr17	+	2113	7	FSM	ENSMUSG00000034165.17	ENSMUST00000171031.8	2113	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	1830.80687281744	1204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAAGGTGGCTCTTGTGA	NA	False	NA	NA	False	AATAAA	-9	NA	47815975	47910608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_47816192_47889633_47889699_47904533_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ENSMUST00000171040.2	chr12	+	731	8	FSM	ENSMUSG00000021243.15	ENSMUST00000171040.2	731	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	770.463443887734	699	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAAAATGCTATGTTG	4713	False	NA	11	True	ATTAAA	-13	NA	85017754	85030065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_85017818_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
ENSMUST00000171080.8	chr11	-	2844	2	FSM	ENSMUSG00000035455.13	ENSMUST00000171080.8	2844	2	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	0	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTTTGTAGTCTGTTTG	NA	False	NA	79	True	TTTAAA	-38	NA	11758962	11750287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_11753064_11758894
ENSMUST00000171121.9	chr17	-	1710	9	FSM	ENSMUSG00000015474.17	ENSMUST00000171121.9	1710	9	0	0	0	0	multi-exon	TRUE	canonical	3	52	junction_2	7.8700381193486	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGCTTGGCTTATTCCCA	3930	False	NA	0	True	AATAAA	-17	NA	34846409	34835635	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846298
ENSMUST00000171140.8	chr15	-	1416	10	FSM	ENSMUSG00000022617.16	ENSMUST00000171140.8	1416	10	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_9	49.0736408087093	788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1640	False	NA	NA	False	AATAAA	-23	NA	89313642	89310569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251_89313361_89313579
ENSMUST00000171151.9	chr10	+	837	6	FSM	ENSMUSG00000020056.17	ENSMUST00000171151.9	837	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	153.628903530553	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTTTCTGATTCTTTTCT	NA	False	NA	NA	False	AATAAA	-21	NA	88037032	88061224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055111_88055223_88060893
ENSMUST00000171158.8	chr12	+	2311	6	FSM	ENSMUSG00000020592.15	ENSMUST00000171158.8	2311	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	93.6640806285953	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCCTATGAACTCTACTG	NA	False	NA	5	True	AATAAA	-14	NA	8821412	8843062	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_8821702_8839406_8839489_8840384_8840867_8841290_8841427_8841637_8842568_8842670
ENSMUST00000171172.3	chr17	-	1272	3	FSM	ENSMUSG00000034509.10	ENSMUST00000171172.3	1272	3	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	3.5	611	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTTGATTTAGACTTTT	NA	False	NA	-2	True	AATAAA	-21	NA	46464479	46458312	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46459211_46463704_46463968_46464368
ENSMUST00000171183.2	chr7	-	883	2	FSM	ENSMUSG00000045948.9	ENSMUST00000171183.2	883	2	0	0	0	0	multi-exon	FALSE	canonical	3	939	junction_1	0	11190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGTGCGGTGTCTGTC	1694	False	NA	-5	True	AATAAA	-24	NA	28441195	28439065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28439665_28440911
ENSMUST00000171229.8	chr13	-	1426	10	FSM	ENSMUSG00000021417.16	ENSMUST00000171229.8	1426	10	0	0	0	0	multi-exon	TRUE	canonical	3	71	junction_9	38.39206450927	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAGAATTCATGTTGG	NA	False	NA	NA	False	AATAAA	-17	NA	35178127	35161730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177214_35177996
ENSMUST00000171245.8	chr15	+	1353	4	FSM	ENSMUSG00000023048.14	ENSMUST00000171245.8	1353	4	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	222.770933671538	3488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCTGTGCCATTACCTT	2435	False	NA	18	True	AATAAA	-21	NA	102367666	102371219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102368017_102368542_102368582_102368804_102369155_102370605
ENSMUST00000171247.8	chr11	+	1867	11	FSM	ENSMUSG00000059552.14	ENSMUST00000171247.8	1867	11	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_10	535.886405873484	3298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGTTTTGAGAGGTTGA	NA	False	NA	15	True	AATAAA	-16	NA	69471184	69482698	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
ENSMUST00000171249.6	chr3	-	1110	8	FSM	ENSMUSG00000028100.12	ENSMUST00000171249.6	1110	8	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	6.53405521487387	479	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTTTTTTTTTTAAGTG	NA	False	NA	-2	True	AATAAA	-13	NA	96615878	96613384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_96613560_96613683_96613845_96614225_96614363_96614517_96614617_96614873_96614967_96615099_96615126_96615307_96615492_96615643
ENSMUST00000171265.8	chr1	+	3680	17	FSM	ENSMUSG00000025915.15	ENSMUST00000171265.8	3680	17	0	0	0	0	multi-exon	TRUE	canonical	3	97	junction_4	18.6899036915657	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTTGGACTATTTCATG	9814	False	NA	NA	False	ATTAAA	-14	NA	9918496	9971068	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_9918611_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
ENSMUST00000171280.3	chr7	+	571	3	FSM	ENSMUSG00000074365.14	ENSMUST00000171280.3	571	3	0	0	0	0	multi-exon	FALSE	canonical	3	864	junction_1	106.5	9112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTGCTTTAAAAGAAAAT	NA	False	NA	-11	True	AATAAA	-24	NA	15635570	15637945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_15635663_15636774_15636933_15637624
ENSMUST00000171284.3	chr17	-	2560	8	FSM	ENSMUSG00000055660.10	ENSMUST00000171284.3	2560	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	27.8948462799061	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTTATAGTGAGTCTCT	NA	False	NA	NA	False	AATATA	-16	NA	95057447	95034512	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95055044_95055846_95056813
ENSMUST00000171368.8	chr3	+	878	5	FSM	ENSMUSG00000015749.13	ENSMUST00000171368.8	878	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	694.522497835743	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATTCTCATTCATCTTC	NA	False	NA	NA	False	NA	NA	NA	95836636	95852754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95836963_95844431_95844508_95845193_95845352_95851618_95851674_95852491
ENSMUST00000171460.8	chr15	+	1719	9	FSM	ENSMUSG00000036106.16	ENSMUST00000171460.8	1719	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	49.5302937604856	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTCTGCCCCCTGGTG	NA	False	NA	5	True	AATAAA	-15	NA	84553820	84587874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_84553907_84565400_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
ENSMUST00000171549.9	chr6	-	2226	16	FSM	ENSMUSG00000004266.16	ENSMUST00000171549.9	2226	16	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_15	37.1732281203676	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGTGCCCCTTGTATC	8920	False	NA	0	True	AATAAA	-28	NA	124715677	124697669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124697872_124698042_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124715461
ENSMUST00000171649.8	chr19	+	1962	12	FSM	ENSMUSG00000071657.13	ENSMUST00000171649.8	1962	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	50.3060057535483	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCGAGGACATATTTTAGAG	NA	False	NA	30	True	AATAAA	-30	NA	8814830	8826047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8815229_8816939_8817149_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
ENSMUST00000171683.3	chr14	-	1892	10	FSM	ENSMUSG00000021982.15	ENSMUST00000171683.3	1892	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	37.821543276319	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAGCTTCATAGTGTATA	NA	False	NA	NA	False	AATAAA	-29	NA	59835393	59805177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_59805488_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
ENSMUST00000171702.8	chr15	-	3052	18	FSM	ENSMUSG00000023015.15	ENSMUST00000171702.8	3052	18	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_16	174.822975218819	870	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGTTGGTTTTCTTGTC	NA	False	NA	0	True	AATAAA	-20	NA	99549524	99518376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99541273_99541405_99549387
ENSMUST00000171721.8	chr19	-	2660	19	FSM	ENSMUSG00000024969.16	ENSMUST00000171721.8	2660	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	113.063799863202	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	4528	False	NA	NA	False	AAGAAA	-13	NA	7318557	7254123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_7254816_7255406_7255452_7257350_7257378_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532
ENSMUST00000171795.9	chr17	-	2734	15	FSM	ENSMUSG00000024127.16	ENSMUST00000171795.9	2734	15	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_9	21.6455679584736	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTTTGTGTAATTTTG	NA	False	NA	-3	True	TTTAAA	-4	NA	85397652	85371957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85396304_85397533
ENSMUST00000171808.8	chr5	-	2402	12	FSM	ENSMUSG00000002297.17	ENSMUST00000171808.8	2402	12	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	47.2513937876549	227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCCTGAGAATAAAAATGAA	NA	False	NA	NA	False	AATAAA	-22	NA	8472716	8447010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_8448163_8449687_8449813_8453079_8453192_8453611_8453741_8454870_8454917_8455801_8455839_8458233_8458311_8458493_8458564_8460009_8460061_8462120_8462301_8471220_8471394_8472466
ENSMUST00000171847.8	chr17	-	2033	13	FSM	ENSMUSG00000023942.16	ENSMUST00000171847.8	2033	13	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_12	693.627476668052	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	-1	True	AATAAA	-18	NA	45910529	45896125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45910398
ENSMUST00000171852.2	chr17	-	704	4	FSM	ENSMUSG00000024079.5	ENSMUST00000171852.2	704	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	9.80929264637478	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTTCCTCTTTCCATCT	NA	False	NA	NA	False	AGTAAA	-26	NA	79189977	79181206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_79181509_79183610_79183732_79185570_79185703_79189828
ENSMUST00000171938.2	chr11	-	2974	3	FSM	ENSMUSG00000035455.13	ENSMUST00000171938.2	2974	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	284.5	793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTTTGTAGTCTGTTTG	NA	False	NA	79	True	TTTAAA	-38	NA	11758962	11750287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_11753064_11756095_11756216_11758884
ENSMUST00000172023.8	chrX	+	812	4	FSM	ENSMUSG00000079435.10	ENSMUST00000172023.8	812	4	0	0	0	0	multi-exon	FALSE	canonical	3	10431	junction_3	1438.31622237794	197994	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTCTCCTGTTGAGTGG	NA	False	NA	81	True	ATTAAA	-22	NA	133486437	133488811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_133486933_133487259_133487328_133488199_133488323_133488685
ENSMUST00000172079.2	chr1	-	653	4	FSM	ENSMUSG00000090553.9	ENSMUST00000172079.2	653	4	0	0	0	0	multi-exon	FALSE	canonical	3	3763	junction_3	471.411356107027	6097	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGGAAGTTTTTGTTAAAA	NA	False	NA	-34	True	AATAAA	-5	NA	133537785	133531633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_133531815_133534238_133534318_133536634_133536698_133537455
ENSMUST00000172091.2	chr16	-	281	2	FSM	ENSMUSG00000022661.15	ENSMUST00000172091.2	281	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTGAAGCCTATCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	45229381	45227556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_45227675_45229218
ENSMUST00000172107.8	chr15	-	3346	12	FSM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	0	0	0	0	multi-exon	FALSE	canonical	3	2366	junction_3	110.211442162196	9652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGACCTTCCCCCATTT	NA	False	NA	-19	True	AATAAA	-18	NA	81284244	81247869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
ENSMUST00000172175.3	chr19	+	2004	2	FSM	ENSMUSG00000071661.8	ENSMUST00000172175.3	2004	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGAACTGGTGTTGG	5428	False	NA	12	True	CATAAA	-17	NA	8779918	8782210	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8780050_8780337
ENSMUST00000172184.2	chr13	-	1327	7	FSM	ENSMUSG00000052180.16	ENSMUST00000172184.2	1327	7	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	317.289431486984	3378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTCAGAACCGAGTGTTT	NA	False	NA	-8	True	AATAAA	-18	NA	34089691	34063799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089625
ENSMUST00000172202.2	chr4	+	1527	2	FSM	ENSMUSG00000091021.2	ENSMUST00000172202.2	1527	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	10519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCAGTCTCCCAGGCAAT	3476	False	NA	NA	False	ATTAAA	-17	NA	132079082	132080693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132080032_132080115
ENSMUST00000172229.8	chr17	-	1446	3	FSM	ENSMUSG00000047407.18	ENSMUST00000172229.8	1446	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	419.5	1640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAGCATTTTCTTGAAG	NA	False	NA	84	True	AATAAA	-26	NA	71156785	71151199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_71152268_71153166_71153394_71156634
ENSMUST00000172282.8	chr10	+	3110	14	FSM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	0	0	0	0	multi-exon	FALSE	canonical	3	966	junction_8	238.590734232364	1377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCCTGCCTGTCATTGG	1383	False	NA	23	True	AATAAA	-13	NA	79690260	79700266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
ENSMUST00000172298.8	chr9	-	2336	5	FSM	ENSMUSG00000004771.13	ENSMUST00000172298.8	2336	5	0	0	0	0	multi-exon	TRUE	canonical	3	899	junction_3	39.0160223497988	2900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGGTGAGATTACATTCT	NA	False	NA	-2	True	AATAAA	-21	NA	64645040	64622580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_64624271_64632783_64632865_64633905_64634100_64635515_64635712_64644865
ENSMUST00000172307.9	chr15	+	1544	12	FSM	ENSMUSG00000078954.10	ENSMUST00000172307.9	1544	12	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	58.989143138924	355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTTTTGTGCTTCTG	NA	False	NA	12	True	ATTAAA	-19	NA	84604252	84656408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_84604329_84617091_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
ENSMUST00000172334.9	chr15	-	920	4	FSM	ENSMUSG00000053559.14	ENSMUST00000172334.9	920	4	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_3	158.779371736032	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCTTTGTTTGATCTGA	NA	False	NA	-94	True	NA	NA	NA	100534821	100519329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_100519908_100520509_100520591_100534067_100534137_100534629
ENSMUST00000172387.8	chr15	-	1223	7	FSM	ENSMUSG00000022370.14	ENSMUST00000172387.8	1223	7	0	0	0	0	multi-exon	FALSE	canonical	3	905	junction_4	55.6070039553372	10354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	False	NA	0	True	AATAAA	-20	NA	55421144	55397489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55411537_55411632_55418715_55418840_55420653
ENSMUST00000172405.8	chr11	-	2950	14	FSM	ENSMUSG00000020530.15	ENSMUST00000172405.8	2950	14	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_13	140.403560365518	906	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCCTCTTCCTTCCTCA	NA	False	NA	0	True	AATAAA	-16	NA	84761564	84723186	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761463
ENSMUST00000172422.8	chr2	+	1534	14	FSM	ENSMUSG00000000194.14	ENSMUST00000172422.8	1534	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	124.164616823819	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTCTTTTTTTTTTT	NA	False	NA	NA	False	ACTAAA	-16	NA	31042362	31082125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_31042494_31057032_31057154_31058173_31058227_31058808_31058892_31061953_31062094_31064213_31064252_31066909_31066967_31067796_31067908_31068265_31068400_31073591_31073668_31074809_31074884_31075500_31075619_31078694_31078826_31081858
ENSMUST00000172429.8	chr17	-	1878	4	FSM	ENSMUSG00000038500.16	ENSMUST00000172429.8	1878	4	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	20.5101600838869	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	False	NA	-1	True	AATAAA	-16	NA	36289863	36283432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602
ENSMUST00000172455.3	chr17	+	1544	5	FSM	ENSMUSG00000073423.11	ENSMUST00000172455.3	1544	5	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	35.2233942146409	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACATGATTTTTACCT	4928	False	NA	3	True	NA	NA	NA	33848074	33850664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33850438_33850515
ENSMUST00000172459.8	chr6	+	2922	24	FSM	ENSMUSG00000023403.15	ENSMUST00000172459.8	2922	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	67.4778406531066	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAACAAATTAATCCTTTAT	204	False	NA	NA	False	AAGAAA	-20	NA	49372568	49446286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402711_49414376_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
ENSMUST00000172501.8	chr17	-	579	5	FSM	ENSMUSG00000092203.8	ENSMUST00000172501.8	579	5	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_4	37.0497975702972	16815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTAAATAGACTTTTTCT	6010	False	NA	NA	False	AATAAA	-14	NA	35171444	35169218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111_35171150_35171327
ENSMUST00000172503.3	chr17	+	1744	7	FSM	ENSMUSG00000073411.13	ENSMUST00000172503.3	1744	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	18.315900802915	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTTGAAAGTGACCTTGA	2085	False	NA	NA	False	NA	NA	NA	35482071	35486329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35482163_35482354_35482625_35482814_35483091_35484759_35485036_35485162_35485280_35485442_35485491_35485663
ENSMUST00000172518.8	chr17	-	710	5	FSM	ENSMUSG00000036315.14	ENSMUST00000172518.8	710	5	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_4	61.4532342517463	9692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGATGTTATGTGTG	NA	False	NA	-13	True	ACTAAA	-15	NA	37269425	37265249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040_37269189_37269269
ENSMUST00000172557.2	chr14	+	700	7	FSM	ENSMUSG00000022194.16	ENSMUST00000172557.2	700	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	922.719651657834	341	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGAAGATGACCTTGAT	NA	False	NA	-1	True	NA	NA	NA	55132074	55135591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55132127_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
ENSMUST00000172571.8	chr17	+	3599	23	FSM	ENSMUSG00000024392.18	ENSMUST00000172571.8	3599	23	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	266.293354829681	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTTGCCTAGTAGTTTC	8515	False	NA	16	True	AATAAA	-17	NA	35354180	35366282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35358210_35358286_35359208_35359448_35359794_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35366116
ENSMUST00000172579.4	chr13	-	2587	4	FSM	ENSMUSG00000074832.12	ENSMUST00000172579.4	2587	4	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	43.8254111979188	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGACTTTGCAACCTGC	NA	False	NA	NA	False	NA	NA	NA	66589139	66577950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_66580291_66581478_66581540_66581739_66581867_66589080
ENSMUST00000172602.9	chr11	+	1935	4	FSM	ENSMUSG00000049811.18	ENSMUST00000172602.9	1935	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	7.40870359029762	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCCATGTACCTCAAGAC	NA	False	NA	2	True	AATAAA	-13	NA	22958346	22973724	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_22958627_22965658_22965885_22969999_22971134_22973429
ENSMUST00000172639.8	chr17	-	690	3	FSM	ENSMUSG00000073413.10	ENSMUST00000172639.8	690	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	7	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGTAAGAAGACAAACACT	NA	False	NA	NA	False	NA	NA	NA	35297041	35290452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35290736_35293150_35293289_35296772
ENSMUST00000172688.4	chr13	-	526	2	FSM	ENSMUSG00000074832.12	ENSMUST00000172688.4	526	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTCCTCGGTTCATAAA	NA	False	NA	NA	False	AATAAA	-36	NA	66567656	66566380	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_66566880_66567629
ENSMUST00000172732.8	chr5	-	4699	25	FSM	ENSMUSG00000029191.17	ENSMUST00000172732.8	4699	25	0	0	0	0	multi-exon	TRUE	canonical	3	281	junction_12	79.0184138174275	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTACTGAGTCTTGCCCCT	-17	True	NA	-4	True	AATAAA	-19	NA	65492964	65419194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436164_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
ENSMUST00000172747.8	chr4	-	1405	9	FSM	ENSMUSG00000028744.16	ENSMUST00000172747.8	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_7	44.5112345369121	588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGCCTGTTTCTGCTGC	NA	False	NA	-5	True	AGTAAA	-13	NA	139037976	139025840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_139026281_139027536_139027723_139028322_139028416_139028560_139028704_139029100_139029189_139029735_139029866_139033753_139033920_139035039_139035162_139037939
ENSMUST00000172748.8	chr15	+	3368	17	FSM	ENSMUSG00000022394.15	ENSMUST00000172748.8	3368	17	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_16	166.366864470513	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGATGATATCAGATGAGT	NA	False	NA	17	True	AATAAA	-24	NA	81548156	81572516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571192
ENSMUST00000172767.9	chr17	-	1398	5	FSM	ENSMUSG00000079557.12	ENSMUST00000172767.9	1398	5	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	25.5196003103497	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATGTTTCTAAGCTGTTC	2676	False	NA	-11	True	AATAAA	-33	NA	33937644	33910488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_33911128_33915010_33915221_33921986_33922183_33928718_33928947_33937519
ENSMUST00000172789.2	chr17	+	1460	3	FSM	ENSMUSG00000024462.18	ENSMUST00000172789.2	1460	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	4.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGTTTTGTAATTTGTCT	NA	False	NA	16	True	NA	NA	NA	37357459	37360359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_37357669_37358345_37358550_37359312
ENSMUST00000172809.2	chr11	+	2000	14	FSM	ENSMUSG00000025156.18	ENSMUST00000172809.2	2000	14	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	255.452956564905	2436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGGCTCCTTTCCTTTC	1634	False	NA	2	True	ATTAAA	-19	NA	120675340	120679928	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120675552_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
ENSMUST00000172817.2	chr17	+	807	3	FSM	ENSMUSG00000092349.2	ENSMUST00000172817.2	807	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	58	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGTGTTCTGACTTAAAT	1259	False	NA	13	True	NA	NA	NA	34124108	34125649	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34124169_34124501_34124892_34125292
ENSMUST00000172820.2	chr10	-	574	2	FSM	ENSMUSG00000001666.9	ENSMUST00000172820.2	574	2	0	0	0	0	multi-exon	FALSE	canonical	3	486	junction_1	0	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGACTTCTTTGCTTCTGT	NA	False	NA	-4	True	AATAAA	-21	NA	75608868	75607063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_75607341_75608571
ENSMUST00000172834.2	chr12	-	801	6	FSM	ENSMUSG00000062352.16	ENSMUST00000172834.2	801	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_2	20.9818969590454	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTCAGACAGGCTATGAGA	NA	False	NA	NA	False	AATAAA	-16	NA	21336186	21321288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21336106
ENSMUST00000172890.8	chr17	+	687	5	FSM	ENSMUSG00000007050.18	ENSMUST00000172890.8	687	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	715.149285114653	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCCTGGTTTGTCGTCTG	273	False	NA	24	True	AATAAA	-18	NA	35201134	35204865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35201211_35201616_35201664_35204084_35204116_35204224_35204285_35204392
ENSMUST00000172912.8	chr17	-	1570	8	FSM	ENSMUSG00000061232.17	ENSMUST00000172912.8	1570	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	28.0698836361489	760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTATGCTGTGTGTATCTG	NA	False	NA	-4	True	AATAAA	-32	NA	34219263	34214990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34215451_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
ENSMUST00000172914.2	chr19	+	1089	4	FSM	ENSMUSG00000024856.11	ENSMUST00000172914.2	1089	4	0	0	0	0	multi-exon	TRUE	canonical	3	90	junction_1	272.960721635102	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTCTGTGTGTGGTTCC	7095	False	NA	36	True	AATAAA	-25	NA	4147400	4149019	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4147734_4147816_4147918_4148004_4148138_4148497
ENSMUST00000172974.8	chr6	+	3063	6	FSM	ENSMUSG00000029767.17	ENSMUST00000172974.8	3063	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	338.701638614282	1036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTATGTGTCTTTTATT	NA	False	NA	115	True	AATAAA	-19	NA	29348067	29376671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_29348208_29356469_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29374397
ENSMUST00000172982.2	chr6	-	274	3	FSM	ENSMUSG00000057103.12	ENSMUST00000172982.2	274	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACCAGATTCTAATGCATG	9885	False	NA	NA	False	NA	NA	NA	85892648	85887143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_85887260_85887977_85888003_85892515
ENSMUST00000173004.2	chr17	+	870	6	FSM	ENSMUSG00000007050.18	ENSMUST00000173004.2	870	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	799.20720717471	2355	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCCTGGTTTGTCGTCTG	273	False	NA	24	True	AATAAA	-18	NA	35201134	35204865	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35201344_35201595_35201664_35203955_35203985_35204084_35204116_35204224_35204285_35204392
ENSMUST00000173023.2	chr1	+	744	6	FSM	ENSMUSG00000037860.16	ENSMUST00000173023.2	744	6	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	14.8108068652589	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACAAAGAAGAGAGGAACAC	NA	False	NA	NA	False	NA	NA	NA	173248163	173287285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_173248253_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173287263
ENSMUST00000173039.9	chr9	-	2970	26	FSM	ENSMUSG00000032422.19	ENSMUST00000173039.9	2970	26	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_22	44.6220393975892	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAGGTATTACGGCCTTT	NA	False	NA	-16	True	AATAAA	-26	NA	88321011	88258816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88302303_88302383_88302801_88302879_88304950_88305072_88320720
ENSMUST00000173070.8	chr17	-	434	4	FSM	ENSMUSG00000092203.8	ENSMUST00000173070.8	434	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	32.4995726467629	4243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6007	False	NA	NA	False	AATAAA	-16	NA	35171447	35169216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35169452_35170860_35170902_35171111_35171150_35171327
ENSMUST00000173076.2	chr1	+	555	1	FSM	ENSMUSG00000092563.2	ENSMUST00000173076.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	316	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAATGC	1535	False	NA	NA	False	AAGAAA	-34	NA	39353979	39354534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_39354000_39354500
ENSMUST00000173080.10	chr17	-	1138	6	FSM	ENSMUSG00000073406.11	ENSMUST00000173080.10	1138	6	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_4	160.992670640623	1788	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587_36394858_36395051
ENSMUST00000173084.8	chr17	-	1286	8	FSM	ENSMUSG00000015120.16	ENSMUST00000173084.8	1286	8	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_7	2152.45295286232	3301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGGTTTTTGTTGCATT	4747	False	NA	NA	False	AATAAA	-9	NA	25492357	25480894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25491511_25491740_25492294
ENSMUST00000173114.8	chr17	-	917	7	FSM	ENSMUSG00000024387.14	ENSMUST00000173114.8	917	7	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_6	341.027369380621	4619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCTCCTACTGTGTGT	NA	False	NA	-7	True	AATAAA	-17	NA	35340405	35335171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340286
ENSMUST00000173132.8	chr17	+	438	3	FSM	ENSMUSG00000041881.14	ENSMUST00000173132.8	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	616	junction_1	4049.5	6839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCAATCTGTCTTTTCTT	4106	False	NA	25	True	AATATA	-16	NA	34043577	34057283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34043655_34048640_34048791_34057072
ENSMUST00000173154.8	chr4	+	2773	25	FSM	ENSMUSG00000017264.17	ENSMUST00000173154.8	2773	25	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_23	124.10724948608	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAGAAGAAAGATGGTTCT	NA	False	NA	NA	False	ATTAAA	-11	NA	148642887	148666847	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666218_148666292_148666740
ENSMUST00000173158.8	chr13	-	1415	8	FSM	ENSMUSG00000021519.12	ENSMUST00000173158.8	1415	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_6	120.714539306581	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAATGTTTCTGGTTT	398	False	NA	NA	False	AATAAA	-10	NA	67081131	67060189	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076352_67077948_67078288_67080998
ENSMUST00000173183.2	chr8	-	731	7	FSM	ENSMUSG00000015023.8	ENSMUST00000173183.2	731	7	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_3	37.1786228900426	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACAATGGAATGTTAAAGT	7716	False	NA	NA	False	NA	NA	NA	111724402	111707104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111724298
ENSMUST00000173211.8	chr17	-	618	4	FSM	ENSMUSG00000036185.10	ENSMUST00000173211.8	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	4.54606056566195	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246635	35244934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35245124_35245313_35245434_35245669_35245763_35246419
ENSMUST00000173323.2	chr17	-	448	2	FSM	ENSMUSG00000008668.16	ENSMUST00000173323.2	448	2	0	0	0	0	multi-exon	FALSE	canonical	3	23355	junction_1	0	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACCTCCGTCTCAGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	34171515	34170977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34171287_34171376
ENSMUST00000173357.8	chr17	+	1399	11	FSM	ENSMUSG00000024369.17	ENSMUST00000173357.8	1399	11	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_1	84.0802592764794	2229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTCCGTCAGCCTCTAG	-6	True	NA	30	True	AGTAAA	-20	NA	35069373	35075230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35069565_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
ENSMUST00000173363.8	chr17	-	871	3	FSM	ENSMUSG00000024309.16	ENSMUST00000173363.8	871	3	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_1	61	1609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCCTACTTTACAGCCA	NA	False	NA	-19	True	AATAAA	-13	NA	34159278	34157896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34158086_34158512_34158638_34158721
ENSMUST00000173397.8	chr9	+	3510	21	FSM	ENSMUSG00000033335.18	ENSMUST00000173397.8	3510	21	0	0	0	0	multi-exon	FALSE	canonical	2	185	junction_20	132.122244531343	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACGTGTGTGGGCCTTTT	5866	False	NA	18	True	AATAAA	-28	NA	21336227	21418434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417631
ENSMUST00000173462.3	chr3	-	666	6	FSM	ENSMUSG00000092607.10	ENSMUST00000173462.3	666	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	166.639011038832	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACACTGATCCTGGAGTC	1238	False	NA	-33	True	AATAAA	-18	NA	95041322	95037039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95037195_95040135_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155
ENSMUST00000173480.8	chr17	-	372	3	FSM	ENSMUSG00000067288.14	ENSMUST00000173480.8	372	3	0	0	0	0	multi-exon	FALSE	canonical	3	11527	junction_1	5274.5	15913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTCTAGAAATTGGTT	NA	False	NA	-25	True	AATAAA	-14	NA	34043439	34042023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34042091_34042166_34042305_34043272
ENSMUST00000173482.8	chr18	-	871	5	FSM	ENSMUSG00000006050.13	ENSMUST00000173482.8	871	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	659.109626693466	1815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCTGATGTCAGACTG	NA	False	NA	-9	True	NA	NA	NA	36803339	36800298	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803056_36803183_36803314
ENSMUST00000173486.8	chr17	-	579	4	FSM	ENSMUSG00000024446.14	ENSMUST00000173486.8	579	4	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_3	70.7153920067383	4146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTGGTATCTCAACT	NA	False	NA	-16	True	AATAAA	-20	NA	36568735	36566558	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568497
ENSMUST00000173492.9	chr17	-	2357	11	FSM	ENSMUSG00000079553.12	ENSMUST00000173492.9	2357	11	0	0	0	0	multi-exon	FALSE	canonical	1	168	junction_4	135.039586788467	439	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTTTTGCTTTTTT	9693	False	NA	-7	True	AATAAA	-26	NA	34109635	34094632	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103961_34104141_34104193_34104822_34104877_34105549_34105650_34105737_34105876_34109451
ENSMUST00000173584.8	chr17	+	4048	29	FSM	ENSMUSG00000007029.17	ENSMUST00000173584.8	4048	29	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	416.176527192145	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAGAAGCGCTCTAGA	9538	False	NA	NA	False	NA	NA	NA	35220026	35235006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35220209_35220387_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230301_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569
ENSMUST00000173616.8	chr17	-	534	2	FSM	ENSMUSG00000073422.12	ENSMUST00000173616.8	534	2	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTTCTTCTTGTGTC	NA	False	NA	-1	True	AATAAA	-23	NA	34245732	34245006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34245445_34245636
ENSMUST00000173655.8	chr11	-	1213	8	FSM	ENSMUSG00000018727.20	ENSMUST00000173655.8	1213	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	68.8879599088851	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600346	113588997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593336_113594096_113594193_113597242_113597396_113599629_113599681_113600212
ENSMUST00000173678.3	chr17	-	685	3	FSM	ENSMUSG00000024309.16	ENSMUST00000173678.3	685	3	0	0	0	0	multi-exon	FALSE	canonical	3	1189	junction_1	13.5	837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGGCCTTTCTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	34159305	34158331	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34158638_34158721_34158793_34158997
ENSMUST00000173713.8	chr17	-	890	7	FSM	ENSMUSG00000015120.16	ENSMUST00000173713.8	890	7	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_6	1745.07048568246	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTAGCAGCTAGTTTCTTT	3820	False	NA	NA	False	GATAAA	-19	NA	25493284	25481148	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493135
ENSMUST00000173721.8	chr7	+	655	4	FSM	ENSMUSG00000025495.16	ENSMUST00000173721.8	655	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	147.981980885061	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTTAAAAAATAAACACTT	6868	False	NA	NA	False	TATAAA	-30	NA	140711256	140723555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140711431_140715221_140715324_140723005_140723089_140723259
ENSMUST00000173744.8	chr11	+	2257	18	FSM	ENSMUSG00000018395.20	ENSMUST00000173744.8	2257	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	25.820514362377	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGGAGAGAACTCCTT	937	False	NA	18	True	AATAAA	-15	NA	53458223	53491929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661_53477758_53481543_53481553_53484221_53484358_53484745_53484927_53485103_53485215_53485652_53485779_53488785_53488840_53489120_53489190_53489533_53489659_53491837
ENSMUST00000173789.2	chr17	+	783	6	FSM	ENSMUSG00000042099.17	ENSMUST00000173789.2	783	6	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	124.071592236096	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGTATTGTGTGGATGGA	NA	False	NA	12	True	AATAAA	-15	NA	34029496	34041891	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34029540_34035159_34035220_34040742_34040889_34040979_34041181_34041259_34041350_34041648
ENSMUST00000173811.8	chr17	-	747	4	FSM	ENSMUSG00000092203.8	ENSMUST00000173811.8	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	36.5908306668336	6943	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6022	False	NA	NA	False	AATAAA	-16	NA	35171432	35169216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111
ENSMUST00000173824.8	chr7	+	2912	14	FSM	ENSMUSG00000038943.17	ENSMUST00000173824.8	2912	14	0	0	0	0	multi-exon	FALSE	canonical	3	387	junction_13	177.415201846273	606	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTACACTGTTTTGTC	NA	False	NA	10	True	AATAAA	-20	NA	79944226	79965999	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79964861
ENSMUST00000173844.8	chr17	-	382	4	FSM	ENSMUSG00000067288.14	ENSMUST00000173844.8	382	4	0	0	0	0	multi-exon	FALSE	canonical	3	11527	junction_1	4307.03060897722	287745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTCTAGAAATTGGTT	NA	False	NA	-25	True	AATAAA	-14	NA	34043536	34042023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34042091_34042166_34042305_34043272_34043321_34043407
ENSMUST00000173869.8	chr17	-	1859	7	FSM	ENSMUSG00000002289.17	ENSMUST00000173869.8	1859	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_5	47.4812828620102	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACATTTTGTTCTCTG	NA	False	NA	-11	True	AATAAA	-8	NA	34000517	33993881	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_33994543_33995923_33996206_33996293_33996390_33997345_33997460_33999503_33999618_33999756_33999868_34000036
ENSMUST00000173879.8	chr17	-	342	2	FSM	ENSMUSG00000067288.14	ENSMUST00000173879.8	342	2	0	0	0	0	multi-exon	FALSE	canonical	3	22076	junction_1	0	1133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGTTTTTCCAGCAGCGT	NA	False	NA	-12	True	AATAAA	-27	NA	34043320	34042010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34042305_34043272
ENSMUST00000173900.2	chr17	+	1111	2	FSM	ENSMUSG00000092368.2	ENSMUST00000173900.2	1111	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCTATCTCTATTAGTC	NA	False	NA	NA	False	AATAAA	-45	NA	36305344	36349327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_36305453_36348324
ENSMUST00000173938.8	chr11	+	1626	13	FSM	ENSMUSG00000017428.17	ENSMUST00000173938.8	1626	13	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_5	64.9491253897148	6277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAGAAAA	NA	False	NA	-44	True	NA	NA	NA	80319448	80362735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277
ENSMUST00000173969.2	chr12	-	1152	2	FSM	ENSMUSG00000091931.6	ENSMUST00000173969.2	1152	2	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_1	0	2828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTCTGTAGCCTCTT	6362	False	NA	-1	True	AATAAA	-20	NA	102724059	102719533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_102720426_102723799
ENSMUST00000174011.8	chr13	-	2353	4	FSM	ENSMUSG00000021519.12	ENSMUST00000174011.8	2353	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_2	10.2306728354819	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATGGTCATTACTGTT	427	False	NA	NA	False	AATAAA	-15	NA	67081102	67069252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_67071010_67076233_67076387_67077948_67078288_67080998
ENSMUST00000174037.8	chr17	-	665	5	FSM	ENSMUSG00000036185.10	ENSMUST00000174037.8	665	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	14.8218588577816	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246890	35244934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35245124_35245313_35245434_35245669_35245763_35246419_35246565_35246772
ENSMUST00000174039.8	chr17	-	934	3	FSM	ENSMUSG00000092203.8	ENSMUST00000174039.8	934	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	40	1544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAATAGACTTTTTCTG	6044	False	NA	NA	False	AATAAA	-15	NA	35171410	35169217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35169452_35169673_35169824_35170860
ENSMUST00000174048.8	chr17	-	560	5	FSM	ENSMUSG00000024309.16	ENSMUST00000174048.8	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	444.939602642876	2075	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTACTTTACAGCCAGTCT	NA	False	NA	-15	True	AATAAA	-17	NA	34159299	34157892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997_34159140_34159270
ENSMUST00000174105.8	chr9	-	2142	12	FSM	ENSMUSG00000032113.17	ENSMUST00000174105.8	2142	12	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_10	131.27033490643	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGGGGTCCTGTATTCC	721	False	NA	NA	False	ATTAAA	-12	NA	36637881	36620735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36637092_36637175_36637858
ENSMUST00000174118.8	chr18	+	1185	9	FSM	ENSMUSG00000079608.11	ENSMUST00000174118.8	1185	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.96452920568771	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAACATTAAATAATGTGCC	NA	False	NA	NA	False	ATTAAA	-19	NA	70605736	70633881	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_70605797_70606272_70606426_70607355_70607437_70609170_70609265_70609452_70609503_70616482_70616610_70629184_70629303_70631618_70631713_70633473
ENSMUST00000174172.8	chr7	+	3008	15	FSM	ENSMUSG00000038943.17	ENSMUST00000174172.8	3008	15	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_13	238.868890688544	499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	13	True	AATAAA	-23	NA	79944252	79966002	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79963274_79963317_79964861
ENSMUST00000174173.2	chr17	-	635	3	FSM	ENSMUSG00000092203.8	ENSMUST00000174173.2	635	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_2	10.5	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACAGGCTGTCCTGTCTGGG	6010	False	NA	NA	False	NA	NA	NA	35171444	35170421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35170902_35171111_35171150_35171327
ENSMUST00000174175.8	chr17	-	632	4	FSM	ENSMUSG00000008668.16	ENSMUST00000174175.8	632	4	0	0	0	0	multi-exon	FALSE	canonical	3	20050	junction_3	1274.65978031613	17263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCGTCTCAGTTTGTCT	NA	False	NA	NA	False	AATAAA	-18	NA	34174634	34170973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34171093_34171194_34171566_34174051_34174151_34174591
ENSMUST00000174259.8	chr14	+	1112	11	FSM	ENSMUSG00000022216.18	ENSMUST00000174259.8	1112	11	0	0	0	0	multi-exon	FALSE	canonical	1	117	junction_4	54.1775783881118	4403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTCTTTATTGTATG	NA	False	NA	14	True	AATAAA	-18	NA	55815816	55818985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55816071_55817051_55817085_55817227_55817291_55817387_55817499_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
ENSMUST00000174269.8	chr9	-	3286	12	FSM	ENSMUSG00000032423.13	ENSMUST00000174269.8	3286	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	268.954664525916	728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTGTCATTAATATAAATG	NA	False	NA	34	True	AATAAA	-16	NA	88364184	88334692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345112_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
ENSMUST00000174282.8	chr9	-	3404	12	FSM	ENSMUSG00000032423.13	ENSMUST00000174282.8	3404	12	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_1	221.053263840518	685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGGCGAGTGTAACTT	NA	False	NA	-15	True	AATAAA	-18	NA	88364249	88334741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88336346_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
ENSMUST00000174350.8	chr4	+	1124	4	FSM	ENSMUSG00000028797.21	ENSMUST00000174350.8	1124	4	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	212.397426224205	785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACCCAA	3198	False	NA	NA	False	NA	NA	NA	129494494	129501670	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_129495037_129495987_129496055_129500879_129500973_129501248
ENSMUST00000174355.8	chr7	-	1104	4	FSM	ENSMUSG00000002985.17	ENSMUST00000174355.8	1104	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4936.24555935199	29033	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGAGTCTCTGTGAGT	NA	False	NA	-30	True	AATAAA	-14	NA	19432933	19430196	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19431029_19431403_19431573_19432112_19432179_19432896
ENSMUST00000174407.3	chr7	-	4069	7	FSM	ENSMUSG00000092416.3	ENSMUST00000174407.3	4069	7	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_4	65.4285021140549	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTACTTACTGCTGTCTT	NA	False	NA	-15	True	AATAAA	-15	NA	42155150	42122809	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139432_42139701_42150781_42150850_42155033
ENSMUST00000174456.8	chr17	+	1595	4	FSM	ENSMUSG00000024462.18	ENSMUST00000174456.8	1595	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	13.0213499897497	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGTTTTGTAATTTGTCT	NA	False	NA	16	True	NA	NA	NA	37356919	37360359	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_37357182_37357586_37357669_37358345_37358550_37359312
ENSMUST00000174467.2	chr17	-	462	2	FSM	ENSMUSG00000092564.3	ENSMUST00000174467.2	462	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATATTCCCTTTTACG	1223	False	NA	-5	True	AATAAA	-23	NA	34128183	34127155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34127561_34128126
ENSMUST00000174493.8	chr17	+	1254	7	FSM	ENSMUSG00000007039.13	ENSMUST00000174493.8	1254	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	164.014989152415	5690	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTGACTGGTTTCTCG	NA	False	NA	17	True	AATAAA	-23	NA	35278076	35281071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280576_35280766
ENSMUST00000174498.2	chr17	+	419	2	FSM	ENSMUSG00000041881.14	ENSMUST00000174498.2	419	2	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGTTCTCTTGAACTT	4147	False	NA	11	True	NA	NA	NA	34043618	34044820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34043792_34044574
ENSMUST00000174510.8	chr10	+	2031	6	FSM	ENSMUSG00000009293.18	ENSMUST00000174510.8	2031	6	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_5	14.0427917452336	1047	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGTTGTGTGGTGCTCA	90	False	NA	5	True	AATAAA	-18	NA	77458108	77481827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_77458251_77466559_77466596_77466682_77466729_77477293_77477413_77479302_77479444_77480280
ENSMUST00000174558.2	chr7	-	4073	4	FSM	ENSMUSG00000092225.2	ENSMUST00000174558.2	4073	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_3	34.9888871246603	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTTTCATTAGTAATTT	NA	False	NA	-14	True	AATAAA	-14	NA	42516658	42466252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_42470028_42471782_42471844_42472041_42472168_42516547
ENSMUST00000174561.8	chr3	+	810	5	FSM	ENSMUSG00000037894.14	ENSMUST00000174561.8	810	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	6290.0667921732	1082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAGCTTTAAACTTGCT	NA	False	NA	-3	True	AATAAA	-12	NA	137570333	137572579	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571840_137571902_137572146
ENSMUST00000174609.9	chr17	-	527	5	FSM	ENSMUSG00000008668.16	ENSMUST00000174609.9	527	5	0	0	0	0	multi-exon	FALSE	canonical	3	518	junction_2	9115.60860557319	16749	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34171093_34171194_34171268_34171376_34171566_34174051_34174151_34174591
ENSMUST00000174616.8	chr11	+	2094	15	FSM	ENSMUSG00000018906.15	ENSMUST00000174616.8	2094	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	22.6135456967631	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTATTTTGGAGTGTTTT	NA	False	NA	25	True	AATAAA	-27	NA	53991800	54022488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_53991867_54001034_54001141_54001811_54001909_54002248_54002401_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017063_54017124_54019873_54019943_54020291_54020389_54022015
ENSMUST00000174620.3	chr17	-	974	4	FSM	ENSMUSG00000008668.16	ENSMUST00000174620.3	974	4	0	0	0	0	multi-exon	FALSE	canonical	3	21077	junction_1	1022.38979302851	15454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTCCGTCTCAGTTTGT	NA	False	NA	NA	False	AATAAA	-16	NA	34174627	34170975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051
ENSMUST00000174662.2	chr17	-	395	2	FSM	ENSMUSG00000008668.16	ENSMUST00000174662.2	395	2	0	0	0	0	multi-exon	FALSE	canonical	3	20050	junction_1	0	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTGGTCTGCAGAAGCTA	NA	False	NA	NA	False	NA	NA	NA	34174634	34173798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34174151_34174591
ENSMUST00000174670.2	chr17	+	1231	4	FSM	ENSMUSG00000024334.10	ENSMUST00000174670.2	1231	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	6.79869268479038	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCGTGTGTCCTTTTCAC	3847	False	NA	NA	False	ACTAAA	-15	NA	34311395	34314207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34311503_34312806_34313564_34313656_34313793_34313976
ENSMUST00000174672.2	chr17	+	2597	3	FSM	ENSMUSG00000036036.16	ENSMUST00000174672.2	2597	3	0	0	0	0	multi-exon	FALSE	canonical	3	2767	junction_1	286	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37314557	37321524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_37315796_37316941_37317087_37320310
ENSMUST00000174702.2	chr8	+	577	2	FSM	ENSMUSG00000031753.17	ENSMUST00000174702.2	577	2	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAGGGAGAGATAGAATT	9633	False	NA	NA	False	NA	NA	NA	111573670	111576905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_111573842_111576499
ENSMUST00000174704.8	chr18	-	1789	18	FSM	ENSMUSG00000053644.14	ENSMUST00000174704.8	1789	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	101.074812129723	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAAGATAGGTTTGGTGA	NA	False	NA	-11	True	ATTAAA	-24	NA	56695290	56659821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675324_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104
ENSMUST00000174714.8	chr17	-	520	4	FSM	ENSMUSG00000092203.8	ENSMUST00000174714.8	520	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	75.5439533575579	2382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6030	False	NA	NA	False	AATAAA	-16	NA	35171424	35169216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35169452_35169673_35169824_35171111_35171150_35171327
ENSMUST00000174745.8	chr17	-	536	4	FSM	ENSMUSG00000008668.16	ENSMUST00000174745.8	536	4	0	0	0	0	multi-exon	FALSE	canonical	3	21077	junction_1	1022.38979302851	15044	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174186	34170972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051
ENSMUST00000174779.8	chr17	-	632	5	FSM	ENSMUSG00000024387.14	ENSMUST00000174779.8	632	5	0	0	0	0	multi-exon	FALSE	canonical	3	826	junction_1	44.5028089001133	1103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTCTCCTACTGTGT	NA	False	NA	-9	True	AATAAA	-15	NA	35338751	35335173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729
ENSMUST00000174786.2	chr19	+	646	3	FSM	ENSMUSG00000038812.17	ENSMUST00000174786.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_1	28.5	1912	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTCTCTTTGCAGCAA	9731	False	NA	16	True	ATTAAA	-16	NA	6887531	6888396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6887631_6887730_6887833_6887951
ENSMUST00000174799.2	chr19	+	843	4	FSM	ENSMUSG00000024856.11	ENSMUST00000174799.2	843	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	272.140078309356	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTCTCAGCCTTTCTGTG	7096	False	NA	27	True	AATAAA	-16	NA	4147401	4149010	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4147508_4147816_4147908_4148004_4148138_4148497
ENSMUST00000174818.8	chr8	+	2493	6	FSM	ENSMUSG00000031562.17	ENSMUST00000174818.9	2493	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	146.129531580718	271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTGTTTGCTTTTATA	NA	False	NA	8	True	ATTAAA	-14	NA	48563196	48594698	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591213_48591914_48593377
ENSMUST00000174846.8	chr1	+	995	4	FSM	ENSMUSG00000048000.16	ENSMUST00000174846.8	995	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	89.5408038581046	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAATAGTTTCATTGTAT	NA	False	NA	NA	False	AATAAA	-15	NA	87254719	87283444	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87282692
ENSMUST00000174864.2	chr5	+	787	3	FSM	ENSMUSG00000092354.8	ENSMUST00000174864.2	787	3	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	52	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCAGGGCTCGGGGTGTTC	NA	False	NA	-77	True	AAAACA	-15	NA	101985317	101992106	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_101985425_101989616_101989940_101991749
ENSMUST00000174882.8	chr7	+	1850	13	FSM	ENSMUSG00000015165.17	ENSMUST00000174882.8	1850	13	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_6	2150.9690451825	6385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGCTGGGGCTCCAAG	NA	False	NA	16	True	AATAAA	-19	NA	28512769	28521674	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28516759_28516830_28517885_28517958_28518068_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
ENSMUST00000175666.2	chr12	-	979	3	FSM	ENSMUSG00000002996.18	ENSMUST00000175666.2	979	3	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_2	45	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTGTAGATTGTTTCAT	NA	False	NA	NA	False	ATTAAA	-21	NA	32000233	31989749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_31990506_31993827_31994012_32000194
ENSMUST00000175668.2	chr17	+	385	2	FSM	ENSMUSG00000093622.2	ENSMUST00000175668.2	385	2	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	0	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAGAAAATTTTAAATAAA	280	False	NA	-4	True	ATTAAA	-8	NA	71141658	71143039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_71141798_71142793
ENSMUST00000175689.8	chr13	-	723	7	FSM	ENSMUSG00000006715.12	ENSMUST00000175689.8	723	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	596.377513735125	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGCTAGGCCGTGTACAT	NA	False	NA	NA	False	NA	NA	NA	24945459	24936073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945342
ENSMUST00000175692.8	chr8	+	1371	8	FSM	ENSMUSG00000031568.17	ENSMUST00000175692.8	1371	8	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_2	58.3067189043231	1076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTTTTCTCTCGGACTG	NA	False	NA	5	True	AATAAA	-13	NA	47986698	48004314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_47986979_47990313_47990395_47995730_47995837_47995916_47996065_47997145_47997264_48000823_48000874_48001006_48001010_48003729
ENSMUST00000175714.8	chr15	+	1953	9	FSM	ENSMUSG00000009585.19	ENSMUST00000175714.8	1953	9	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_5	144.740284648055	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAAGTTGTGCATGATTG	8246	False	NA	6	True	NA	NA	NA	79776603	79792119	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
ENSMUST00000175741.8	chr11	-	2337	4	FSM	ENSMUSG00000018733.11	ENSMUST00000175741.8	2337	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	26.4112770527204	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGACTTCTTGAAGTTT	2473	False	NA	-7	True	AATAAA	-16	NA	83189721	83185900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_83187267_83188313_83188868_83189141_83189380_83189542
ENSMUST00000175752.8	chr15	+	1977	8	FSM	ENSMUSG00000009585.19	ENSMUST00000175752.8	1977	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	224.554434107971	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCCCCTCACCCATCAGA	8291	False	NA	NA	False	AATAAA	-15	NA	79776648	79792287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79789644_79789802_79790541_79790804_79791051_79791165_79791504
ENSMUST00000175865.6	chr6	-	757	4	FSM	ENSMUSG00000091625.9	ENSMUST00000175865.6	757	4	0	0	0	0	multi-exon	FALSE	canonical	3	1056	junction_2	255.422525762053	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGATTTGATTTATTA	NA	False	NA	NA	False	AATAAA	-14	NA	56681662	56678049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_56678275_56679080_56679154_56679990_56680395_56681607
ENSMUST00000175992.8	chr4	-	1847	11	FSM	ENSMUSG00000028776.15	ENSMUST00000175992.8	1847	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	79.0445444037727	969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTCTGGGAGTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	130068585	130059396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722_130061847_130062811_130062927_130066724_130066789_130067685_130068001_130068515
ENSMUST00000176005.2	chr9	+	467	2	FSM	ENSMUSG00000032540.17	ENSMUST00000176005.2	467	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCCTGTGCAATTATGTC	NA	False	NA	NA	False	NA	NA	NA	122180796	122188344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_122180905_122187985
ENSMUST00000176010.8	chr10	-	582	4	FSM	ENSMUSG00000093674.8	ENSMUST00000176010.8	582	4	0	0	0	0	multi-exon	FALSE	canonical	3	7075	junction_3	6241.33064516071	1181926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128385174	128383982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128384299_128384526_128384550_128384817_128384843_128384956
ENSMUST00000176015.5	chr5	+	980	7	FSM	ENSMUSG00000029223.13	ENSMUST00000176015.5	980	7	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_2	35.4479273802511	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTGGTTTTTATTTT	NA	False	NA	28	True	AATAAA	-17	NA	66834234	66844572	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
ENSMUST00000176016.2	chr11	+	471	2	FSM	ENSMUSG00000093483.2	ENSMUST00000176016.2	471	2	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_1	0	1563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTATTTGTTTGGGTAA	5892	False	NA	8	True	ATTAAA	-17	NA	83182568	83185456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_83182924_83185340
ENSMUST00000176066.8	chr2	+	955	7	FSM	ENSMUSG00000017999.17	ENSMUST00000176066.8	955	7	0	0	0	0	multi-exon	FALSE	canonical	3	722	junction_6	30.0055550412475	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCACTACCTGCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	166857229	166866453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862635_166863967_166864074_166866303
ENSMUST00000176086.8	chr17	-	2687	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176086.8	2687	21	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_19	106.585693223809	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746864	24727823	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738087_24738221_24746739
ENSMUST00000176116.8	chr11	-	1688	8	FSM	ENSMUSG00000040904.11	ENSMUST00000176116.8	1688	8	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_7	221.001523681145	12455	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70130656	70126031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70126295_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609_70129297_70129763_70129841_70130485
ENSMUST00000176158.2	chr7	-	869	3	FSM	ENSMUSG00000030879.11	ENSMUST00000176158.2	869	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1127	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGGATTTATGGAAAGTAA	NA	False	NA	-5	True	GATAAA	-43	NA	105460165	105458863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_105459352_105459495_105459726_105460014
ENSMUST00000176184.2	chr10	-	695	3	FSM	ENSMUSG00000093674.8	ENSMUST00000176184.2	695	3	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_2	10878.5	73693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAAACTGCTGTTACGTG	NA	False	NA	-25	True	AATAAA	-22	NA	128385028	128383989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128384299_128384526_128384841_128384956
ENSMUST00000176200.8	chr10	-	586	2	FSM	ENSMUSG00000063320.12	ENSMUST00000176200.8	586	2	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_1	0	1567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTACTATACATTCTTGG	NA	False	NA	0	True	NA	NA	NA	82458760	82455684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_82456052_82458541
ENSMUST00000176215.2	chr17	+	477	1	FSM	ENSMUSG00000093565.2	ENSMUST00000176215.2	477	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	386	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGTTTCAGACGTTGT	4783	False	NA	13	True	AATAAA	-16	NA	24747240	24747717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24747200_24747700
ENSMUST00000176304.8	chr7	+	1006	7	FSM	ENSMUSG00000019737.15	ENSMUST00000176304.8	1006	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	73.2385751423994	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGAGAATATCAGTACT	NA	False	NA	11	True	ATTAAA	-18	NA	30014340	30018471	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30017392_30017468_30018097_30018157_30018248
ENSMUST00000176325.8	chr15	+	2765	8	FSM	ENSMUSG00000009585.19	ENSMUST00000176325.8	2765	8	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_5	149.473770820386	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	8292	False	NA	NA	False	NA	NA	NA	79776649	79792637	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051
ENSMUST00000176509.8	chr12	-	1591	3	FSM	ENSMUSG00000056459.15	ENSMUST00000176509.8	1591	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	7.5	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTATGAGCTTTTCTATAC	NA	False	NA	-1	True	ATTAAA	-17	NA	76415773	76395717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_76396974_76402662_76402843_76415618
ENSMUST00000176545.2	chr11	+	356	3	FSM	ENSMUSG00000093483.2	ENSMUST00000176545.2	356	3	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	166	3245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATTTGTTTGGGTAAGA	5869	False	NA	10	True	ATTAAA	-19	NA	83182545	83185458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_83182660_83182799_83182924_83185340
ENSMUST00000176557.8	chr9	+	1898	8	FSM	ENSMUSG00000032336.18	ENSMUST00000176557.8	1898	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	135.42570822772	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGAATAATACTCTTTA	16	False	NA	NA	False	AATAAA	-16	NA	58489688	58560161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58557791_58557802_58558540_58558616_58559141
ENSMUST00000176569.3	chr3	-	555	2	FSM	ENSMUSG00000093424.4	ENSMUST00000176569.3	555	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGTACATTGTTG	9735	False	NA	NA	False	NA	NA	NA	95222438	95218688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95218919_95222113
ENSMUST00000176610.9	chr19	-	2065	12	FSM	ENSMUSG00000003680.17	ENSMUST00000176610.9	2065	12	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_4	26.5722156514676	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTGTCTATGCTCGTG	9901	False	NA	-3	True	AATAAA	-14	NA	8763680	8751855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8763573
ENSMUST00000176618.2	chr15	-	1234	2	FSM	ENSMUSG00000093394.2	ENSMUST00000176618.2	1234	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCCAATGTGTGACAGT	NA	False	NA	-3	True	NA	NA	NA	88775719	88773982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_88775099_88775601
ENSMUST00000176652.8	chr17	-	3003	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176652.8	3003	21	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_18	53.1587010751768	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCATGTTCAGATGAGGA	NA	False	NA	NA	False	NA	NA	NA	24746912	24727535	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104_24738221_24746739
ENSMUST00000176670.8	chr10	-	2227	11	FSM	ENSMUSG00000055531.13	ENSMUST00000176670.8	2227	11	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_6	215.998518513438	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATGTGTAAAGCTGTTCA	4515	False	NA	-12	True	AATAAA	-13	NA	117212834	117184946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197678_117197790_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
ENSMUST00000176683.8	chr10	-	437	4	FSM	ENSMUSG00000093674.8	ENSMUST00000176683.8	437	4	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_3	9065.73447413697	918748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128385031	128383982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128384299_128384526_128384550_128384817_128384841_128384956
ENSMUST00000176686.8	chr10	-	2200	10	FSM	ENSMUSG00000055531.13	ENSMUST00000176686.8	2200	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	212.334001975806	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTAAAGCTGTTCACGT	4471	False	NA	-9	True	AATAAA	-16	NA	117212878	117184943	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_117185407_117191839_117192033_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
ENSMUST00000176774.8	chr2	-	2377	15	FSM	ENSMUSG00000040434.17	ENSMUST00000176774.8	2377	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	41.8854731039636	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGAGTGTTTTGTCTGT	NA	False	NA	0	True	NA	NA	NA	92201331	92195390	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92199718_92199834_92200007_92200204_92200329_92200521_92200605_92200907_92201009_92201083_92201239_92201325
ENSMUST00000176799.8	chr11	+	847	4	FSM	ENSMUSG00000090266.11	ENSMUST00000176799.8	847	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	14.8996644257513	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCAATGGGTATGAAGA	9063	False	NA	17	True	CATAAA	-17	NA	116734498	116740455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116734601_116739079_116739185_116739726_116740127_116740215
ENSMUST00000176834.8	chr11	-	620	3	FSM	ENSMUSG00000034120.19	ENSMUST00000176834.8	620	3	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_1	811.5	925	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAATGTGTCCTGGTCTTT	7011	False	NA	-10	True	ATTAAA	-26	NA	116742912	116740731	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_116741180_116741681_116741788_116742846
ENSMUST00000176906.2	chr10	-	509	3	FSM	ENSMUSG00000093674.8	ENSMUST00000176906.2	509	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	7652	244848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAACTGCTGTTACGTGT	NA	False	NA	-24	True	AATAAA	-23	NA	128384971	128383988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128384321_128384526_128384550_128384817
ENSMUST00000176921.2	chr17	+	298	2	FSM	ENSMUSG00000093565.2	ENSMUST00000176921.2	298	2	0	0	0	0	multi-exon	TRUE	canonical	3	77	junction_1	0	854	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTTTCAGACGTTGTG	4764	False	NA	14	True	AATAAA	-17	NA	24747221	24747718	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24747411_24747609
ENSMUST00000176957.8	chr14	+	1117	9	FSM	ENSMUSG00000021996.17	ENSMUST00000176957.8	1117	9	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	425.971756692859	10399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTAAATTGTTATTTT	NA	False	NA	13	True	AATAAA	-14	NA	74969823	74987288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_74969962_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
ENSMUST00000176966.2	chr10	-	523	2	FSM	ENSMUSG00000093674.8	ENSMUST00000176966.2	523	2	0	0	0	0	multi-exon	FALSE	canonical	3	7075	junction_1	0	1645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCAAAGGAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	128384981	128384344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128384843_128384956
ENSMUST00000177019.8	chr13	-	2626	15	FSM	ENSMUSG00000021546.19	ENSMUST00000177019.8	2626	15	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_9	1943.30427759168	2809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	4803	False	NA	-23	True	AATAAA	-15	NA	58550278	58539052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUST00000177056.8	chr19	-	2006	11	FSM	ENSMUSG00000003680.17	ENSMUST00000177056.8	2006	11	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_10	58.7504042539283	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGACGTGTCTATGCTCG	9901	False	NA	-5	True	AATAAA	-12	NA	8763680	8751857	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8763573
ENSMUST00000177102.8	chr7	+	2928	14	FSM	ENSMUSG00000030523.19	ENSMUST00000177102.8	2928	14	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_13	349.928648686554	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACGCGCCTGCCTGTAT	NA	False	NA	85	True	ATTAAA	-12	NA	63835206	63874584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585_63860687_63867237_63867409_63868855_63868991_63869989_63870041_63873438
ENSMUST00000177113.2	chr3	+	381	1	FSM	ENSMUSG00000105827.2	ENSMUST00000177113.2	381	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGCAGCAGAGACGTGATT	3078	False	NA	NA	False	NA	NA	NA	96177067	96177448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96177100_96177400
ENSMUST00000177150.2	chr11	+	383	3	FSM	ENSMUSG00000093483.2	ENSMUST00000177150.2	383	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	190.5	3758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTATTTGTTTGGGTAAG	5848	False	NA	9	True	ATTAAA	-18	NA	83182524	83185457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_83182660_83182792_83182924_83185340
ENSMUST00000177158.2	chr9	+	1244	5	FSM	ENSMUSG00000032594.12	ENSMUST00000177158.2	1244	5	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	111.108899283541	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGCAGAACATTTGTCC	2379	False	NA	36	True	TATAAA	-6	NA	107909271	107923342	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_107909409_107918103_107918286_107921923_107922100_107922444_107922513_107922661
ENSMUST00000177163.8	chr10	-	544	3	FSM	ENSMUSG00000093674.8	ENSMUST00000177163.8	544	3	0	0	0	0	multi-exon	FALSE	canonical	3	15318	junction_2	3514.5	273197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128385022	128383982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128384299_128384526_128384550_128384817
ENSMUST00000177166.2	chr15	-	730	2	FSM	ENSMUSG00000093394.2	ENSMUST00000177166.2	730	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACAG	NA	False	NA	NA	False	NA	NA	NA	88775728	88774710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_88775099_88775386
ENSMUST00000177177.8	chr6	+	854	9	FSM	ENSMUSG00000069678.11	ENSMUST00000177177.8	854	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	65.3345955447801	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTCATCTTCCTTCTTA	101	False	NA	23	True	AATAAA	-15	NA	83055610	83057835	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83055681_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
ENSMUST00000177207.2	chr14	+	1476	3	FSM	ENSMUSG00000022010.20	ENSMUST00000177207.2	1476	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	1157	762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	6275	False	NA	29	True	AATAAA	-19	NA	76741653	76745203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_76741734_76742688_76742738_76743856
ENSMUST00000177258.2	chr5	+	1368	2	FSM	ENSMUSG00000053178.6	ENSMUST00000177258.2	1368	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	443	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTATTTTGTATGTATT	NA	False	NA	NA	False	AATAAA	-22	NA	4242366	4247651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_4242419_4246335
ENSMUST00000177377.8	chr13	-	775	7	FSM	ENSMUSG00000021546.19	ENSMUST00000177377.8	775	7	0	0	0	0	multi-exon	FALSE	canonical	3	1429	junction_6	2367.11782671576	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGTTTTTTAAGGTGGT	5157	False	NA	NA	False	NA	NA	NA	58549924	58543702	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ENSMUST00000177390.8	chr3	+	2836	5	FSM	ENSMUSG00000046519.16	ENSMUST00000177390.8	2836	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	6.87386354243376	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTTCTCTCTGTACAT	NA	False	NA	4	True	AATAAA	-15	NA	95496244	95526553	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_95496446_95499027_95499217_95515216_95515349_95516982_95517098_95524354
ENSMUST00000177415.2	chr17	-	354	1	FSM	ENSMUSG00000093686.2	ENSMUST00000177415.2	354	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2806	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCACACTTTTTAAGTA	NA	False	NA	NA	False	NA	NA	NA	66720979	66720625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_66720600_66721000
ENSMUST00000177441.2	chr17	-	1658	8	FSM	ENSMUSG00000079657.11	ENSMUST00000177441.2	1658	8	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_7	7.80894306783797	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTGTCATCTGTGGAA	NA	False	NA	-13	True	AATAAA	-12	NA	24752686	24748038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24748618_24748714_24748792_24748887_24748945_24749028_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
ENSMUST00000177466.8	chr5	+	1005	6	FSM	ENSMUSG00000079165.11	ENSMUST00000177466.8	1005	6	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	39.5858560599616	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTGTTGACAATAAATCA	1101	False	NA	-8	True	NA	NA	NA	137639595	137641130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_137639819_137639983_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
ENSMUST00000177501.2	chr1	+	1636	3	FSM	ENSMUSG00000025940.7	ENSMUST00000177501.2	1636	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	240	1394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCCAGTATGTGTTTGTT	NA	False	NA	5	True	NA	NA	NA	16735430	16748419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_16735730_16737888_16737998_16747191
ENSMUST00000177513.2	chr10	-	680	3	FSM	ENSMUSG00000093674.8	ENSMUST00000177513.2	680	3	0	0	0	0	multi-exon	FALSE	canonical	3	7075	junction_2	7636	74182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGCTGTTACGTGTTTT	NA	False	NA	-21	True	AATAAA	-26	NA	128385007	128383985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128384299_128384526_128384843_128384956
ENSMUST00000177533.2	chr11	+	308	3	FSM	ENSMUSG00000093483.2	ENSMUST00000177533.2	308	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	5.5	923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGTATTTGTTTGGGTA	5891	False	NA	7	True	ATTAAA	-16	NA	83182567	83185455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_83182660_83182792_83182894_83185340
ENSMUST00000177667.2	chr19	+	1243	5	FSM	ENSMUSG00000025226.12	ENSMUST00000177667.2	1243	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.8004237212059	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCGTGGTGCATAGGGGA	6316	False	NA	8	True	AATAAA	-17	NA	46316625	46318884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_46316741_46316841_46316966_46317113_46317268_46317526_46318033_46318540
ENSMUST00000177698.4	chr6	-	616	4	FSM	ENSMUSG00000015112.16	ENSMUST00000177698.4	616	4	0	0	0	0	multi-exon	FALSE	canonical	3	693	junction_3	11.115554667022	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCAGCCTGGTCTACAAAG	NA	False	NA	NA	False	NA	NA	NA	6191319	6131467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_6131769_6152407_6152524_6180970_6181114_6191263
ENSMUST00000177752.9	chr19	-	664	6	FSM	ENSMUSG00000056629.17	ENSMUST00000177752.9	664	6	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_5	164.60571071503	4922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957869	6955111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956510_6957761
ENSMUST00000177786.8	chr14	-	1955	7	FSM	ENSMUSG00000096574.8	ENSMUST00000177786.8	1955	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.46249406456535	760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19137146	19114973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19122451_19122587_19135569_19135684_19137061
ENSMUST00000177800.8	chr5	-	1668	4	FSM	ENSMUSG00000029600.11	ENSMUST00000177800.8	1668	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	33.2365260920372	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGTAGTGTGTTACTTTTT	6315	False	NA	NA	False	ATTAAA	-20	NA	120750654	120747122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_120748028_120749442_120749795_120750044_120750140_120750338
ENSMUST00000177840.9	chr7	+	1708	8	FSM	ENSMUSG00000025510.15	ENSMUST00000177840.9	1708	8	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	29.0537854500854	1569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATAAGCACTCGAATC	NA	False	NA	-2	True	NA	NA	NA	141047334	141051376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_141047380_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
ENSMUST00000177841.8	chr7	+	1364	3	FSM	ENSMUSG00000045752.14	ENSMUST00000177841.8	1364	3	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_2	18	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623104	142624824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_142623251_142623491_142623558_142623672
ENSMUST00000177880.2	chr4	-	1969	2	FSM	ENSMUSG00000028629.10	ENSMUST00000177880.2	1969	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAGTTGACTTGATGTT	NA	False	NA	-15	True	AATAAA	-16	NA	120782202	120778398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_120779873_120781707
ENSMUST00000177895.8	chr7	+	1486	9	FSM	ENSMUSG00000030638.14	ENSMUST00000177895.8	1486	9	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_3	89.2394951801051	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	NA	False	NA	17	True	AATAAA	-24	NA	81824697	81956627	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_81824768_81909339_81909409_81917487_81917561_81919987_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
ENSMUST00000177916.8	chr13	-	3067	7	FSM	ENSMUSG00000094870.9	ENSMUST00000177916.8	3067	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	50.5426112854842	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGTGTATGGGTGTT	NA	False	NA	76	True	AGTAAA	-18	NA	120252341	120226722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_120228563_120230241_120230373_120237302_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252314
ENSMUST00000177955.8	chr8	+	1307	10	FSM	ENSMUSG00000031505.12	ENSMUST00000177955.8	1307	10	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	41.4568048294447	1310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	33	True	NA	NA	NA	11547505	11563287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
ENSMUST00000178034.9	chr14	-	2730	15	FSM	ENSMUSG00000022218.17	ENSMUST00000178034.9	2730	15	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_14	38.2803834241775	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGCTGTTTAGTAGTCCT	396	False	NA	-23	True	AATAAA	-22	NA	55950951	55937490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950843
ENSMUST00000178041.8	chr10	+	1536	13	FSM	ENSMUSG00000025395.15	ENSMUST00000178041.8	1536	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	189.963593003151	5067	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACTGCAGAAGTTTGTAA	980	False	NA	2	True	AATAAA	-12	NA	127851036	127865852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858842_127859448_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
ENSMUST00000178051.8	chr9	-	785	5	FSM	ENSMUSG00000096316.8	ENSMUST00000178051.8	785	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	2.6809513236909	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTAGTCTGCAATGTTTT	NA	False	NA	NA	False	ATTAAA	-26	NA	99119292	99111428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_99111671_99114500_99114551_99116351_99116581_99118292_99118411_99119146
ENSMUST00000178078.8	chr7	-	723	4	FSM	ENSMUSG00000035642.17	ENSMUST00000178078.8	723	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	26.7124606795322	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCATTAGCGATCTCAC	NA	False	NA	NA	False	AATAAA	-31	NA	97224860	97199537	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97224794
ENSMUST00000178079.8	chr1	+	487	5	FSM	ENSMUSG00000073702.12	ENSMUST00000178079.8	487	5	0	0	0	0	multi-exon	FALSE	canonical	3	1086	junction_1	4596.75456164455	145005	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCAGGGTTTGGTTTTCC	NA	False	NA	24	True	AATAAA	-13	NA	39407009	39410445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_39407088_39407229_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUST00000178105.3	chr11	-	2187	2	FSM	ENSMUSG00000020483.15	ENSMUST00000178105.3	2187	2	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_1	0	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTGGGGTTTCTTTGGG	691	False	NA	0	True	ATTAAA	-22	NA	87874838	87870350	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_87872397_87874697
ENSMUST00000178147.3	chrX	-	651	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	116025	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	151693151	151692500	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_151692500_151693200
ENSMUST00000178155.9	chr16	+	429	4	FSM	ENSMUSG00000096215.9	ENSMUST00000178155.9	429	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	13.8804418757713	1024	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGTCTGGACTGTGTT	NA	False	NA	11	True	NA	NA	NA	4825200	4826173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_4825283_4825607_4825753_4825835_4825934_4826069
ENSMUST00000178235.8	chr1	-	1756	11	FSM	ENSMUSG00000006299.14	ENSMUST00000178235.8	1756	11	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_10	361.877106211487	3349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCAGTGTCTGTGTGCAT	NA	False	NA	-5	True	AATAAA	-13	NA	74323839	74319004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323204_74323661
ENSMUST00000178254.2	chr11	-	724	3	FSM	ENSMUSG00000018293.5	ENSMUST00000178254.2	724	3	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_2	4423	19068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGAAAATTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	70545447	70542764	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_70543048_70543612_70543781_70545174
ENSMUST00000178271.3	chr13	-	2966	8	FSM	ENSMUSG00000094870.9	ENSMUST00000178271.3	2966	8	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_7	48.3110668861025	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGTGTATGGGTGTT	NA	False	NA	76	True	AGTAAA	-18	NA	120252342	120226722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_120228563_120230241_120230373_120237302_120237526_120237627_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252314
ENSMUST00000178289.3	chr13	+	2035	2	FSM	ENSMUSG00000039182.7	ENSMUST00000178289.3	2035	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCCTGTTTTTCATTGT	NA	False	NA	10	True	ATTAAA	-17	NA	14804738	14812788	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_14804870_14810884
ENSMUST00000178310.9	chr19	+	613	5	FSM	ENSMUSG00000038274.14	ENSMUST00000178310.9	613	5	0	0	0	0	multi-exon	FALSE	canonical	3	11442	junction_1	1294.53167207295	279445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	982	False	NA	4	True	AATAAA	-16	NA	6107873	6109549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6108032_6108272_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUST00000178328.8	chr3	-	1698	7	FSM	ENSMUSG00000019528.19	ENSMUST00000178328.8	1698	7	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	8.93805845186128	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTTGGTTGTTTAAGTA	NA	False	NA	-5	True	AATAAA	-12	NA	20209260	20176250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_20177029_20179421_20179642_20192180_20192308_20204702_20204866_20205116_20205292_20206893_20207030_20209161
ENSMUST00000178331.8	chr12	+	812	4	FSM	ENSMUSG00000079179.10	ENSMUST00000178331.8	812	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	69.5621225156974	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCTCTCAGGACAAATTT	NA	False	NA	10	True	AATAAA	-19	NA	3285525	3288273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288063
ENSMUST00000178385.9	chr7	-	1538	7	FSM	ENSMUSG00000030629.16	ENSMUST00000178385.9	1538	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	230.002475832085	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCTACGTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	84328600	84264261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84328517
ENSMUST00000178399.3	chr14	-	1865	10	FSM	ENSMUSG00000022221.15	ENSMUST00000178399.3	1865	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	41.6620738209433	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGTCTGAGGTGTCAA	NA	False	NA	-3	True	AATAAA	-18	NA	56026314	56022453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_56022809_56023318_56023377_56023482_56023816_56024039_56024108_56024213_56024382_56024570_56024618_56024738_56024897_56025280_56025591_56025694_56025822_56026073
ENSMUST00000178421.8	chr13	-	1414	10	FSM	ENSMUSG00000021417.16	ENSMUST00000178421.8	1414	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	51.0630208542878	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCTTAAGAATTCATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	35178127	35161732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177204_35177996
ENSMUST00000178473.8	chr4	+	1076	4	FSM	ENSMUSG00000073684.14	ENSMUST00000178473.8	1076	4	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	46.5784881201135	806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTTCCTTCATAGCAA	NA	False	NA	8	True	NA	NA	NA	155334422	155341144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_155334520_155334962_155335108_155335212_155335494_155340591
ENSMUST00000178474.8	chr1	-	2565	12	FSM	ENSMUSG00000026341.17	ENSMUST00000178474.8	2565	12	0	0	0	0	multi-exon	FALSE	canonical	3	2308	junction_6	123.717286351378	2931	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGATGGTTTTTCTTCGTG	NA	False	NA	-4	True	AATAAA	-20	NA	125363284	125320642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021
ENSMUST00000178573.8	chr16	+	1153	3	FSM	ENSMUSG00000022787.11	ENSMUST00000178573.8	1153	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	36.5	692	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACCAACAGTAATTTTG	NA	False	NA	9	True	AATAAA	-10	NA	32066044	32075892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32066086_32070640_32071137_32075276
ENSMUST00000178615.8	chr19	-	1018	3	FSM	ENSMUSG00000094936.9	ENSMUST00000178615.8	1018	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5.5	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTATGTGTGCTTTGAGAA	NA	False	NA	-4	True	AATAAA	-16	NA	4843879	4835180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4835596_4842425_4842849_4843699
ENSMUST00000178627.8	chr1	+	1363	10	FSM	ENSMUSG00000034343.15	ENSMUST00000178627.8	1363	10	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_9	29.8142396999972	2064	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGAGACCATGCTAGGC	319	False	NA	NA	False	AAGAAA	-16	NA	91178040	91213747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_91178160_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
ENSMUST00000178632.8	chrX	+	933	3	FSM	ENSMUSG00000046432.13	ENSMUST00000178632.8	933	3	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_2	2417.5	40252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTGAAATTCAACAGTATT	NA	False	NA	NA	False	AATAAA	-32	NA	135171001	135172727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_135171151_135171558_135171632_135172016
ENSMUST00000178774.3	chr17	-	498	5	FSM	ENSMUSG00000052146.17	ENSMUST00000178774.3	498	5	0	0	0	0	multi-exon	FALSE	canonical	3	4850	junction_1	728.093915645502	1670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGGAGTTTATGTTGTAT	NA	False	NA	NA	False	NA	NA	NA	27853449	27849438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853299
ENSMUST00000178808.8	chr3	-	1462	8	FSM	ENSMUSG00000027890.18	ENSMUST00000178808.8	1462	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	32.937169624258	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCAGATGTCTTTTCCT	NA	False	NA	-6	True	AATAAA	-18	NA	107952175	107947725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950835_107950918_107951210_107951276_107951668_107951745_107952160
ENSMUST00000178858.3	chr17	-	804	2	FSM	ENSMUSG00000079471.5	ENSMUST00000178858.3	804	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	1308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGGTGGTGGCTTTTGT	NA	False	NA	-5	True	AATAAA	-20	NA	45912993	45911896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45912612_45912904
ENSMUST00000178999.3	chr9	+	820	3	FSM	ENSMUSG00000058173.13	ENSMUST00000178999.3	820	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTTCTCTTGTTTG	NA	False	NA	11	True	AATAAA	-19	NA	15432154	15456556	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_15432176_15436923_15437001_15455834
ENSMUST00000179022.8	chr10	-	3370	12	FSM	ENSMUSG00000062075.14	ENSMUST00000179022.8	3370	12	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_8	24.5238962565761	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTCAGAGTAGATCTTCA	3111	False	NA	-1	True	AATAAA	-17	NA	80754079	80737197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80738735_80739045_80739157_80739283_80739404_80739764_80739873_80739948_80740223_80740386_80740608_80740719_80740846_80740914_80741086_80742984_80743111_80743218_80743376_80745742_80745880_80753797
ENSMUST00000179094.8	chr11	-	4052	17	FSM	ENSMUSG00000061306.17	ENSMUST00000179094.8	4052	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	187.660889305683	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTCGAGTCGAGTTGGT	5030	False	NA	-12	True	AATAAA	-12	NA	120042138	119995277	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_119996863_119997259_119997437_120000197_120000222_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
ENSMUST00000179118.2	chr19	-	840	6	FSM	ENSMUSG00000024963.13	ENSMUST00000179118.2	840	6	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_3	69.5097115516961	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9507	False	NA	-4	True	AATAAA	-17	NA	6969640	6965278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6965477_6965556_6965644_6966790_6966953_6967048_6967234_6968085_6968180_6969526
ENSMUST00000179142.2	chr19	+	736	4	FSM	ENSMUSG00000038274.14	ENSMUST00000179142.2	736	4	0	0	0	0	multi-exon	FALSE	canonical	3	14010	junction_2	399.82023738453	29315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTTCTTCATTTGTAA	1105	False	NA	9	True	AATAAA	-21	NA	6107996	6109554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUST00000179175.3	chr4	+	2953	4	FSM	ENSMUSG00000056300.15	ENSMUST00000179175.3	2953	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	159.826989794173	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	146599376	146623852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_146599500_146616526_146616611_146619877_146620005_146621233
ENSMUST00000179189.9	chr19	-	1411	4	FSM	ENSMUSG00000094936.9	ENSMUST00000179189.9	1411	4	0	0	0	0	multi-exon	TRUE	canonical	3	70	junction_3	11.4406682011537	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCTCCTCCCTTCCTCCT	NA	False	NA	NA	False	GGGGCT	-4	NA	4843888	4835334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4835596_4837388_4838071_4842425_4842849_4843843
ENSMUST00000179233.2	chr8	-	1423	9	FSM	ENSMUSG00000008892.13	ENSMUST00000179233.2	1423	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	726.253560662528	11040	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTTAGTAGTGGTTGGT	NA	False	NA	0	True	AATAAA	-33	NA	23083829	23067090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077565_23077619_23078741_23078811_23083699
ENSMUST00000179263.2	chr12	-	525	2	FSM	ENSMUSG00000091931.6	ENSMUST00000179263.2	525	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCCACTGTTGTTACAT	6359	False	NA	NA	False	NA	NA	NA	102724062	102722539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_102722802_102723799
ENSMUST00000179323.2	chr4	+	808	2	FSM	ENSMUSG00000050188.9	ENSMUST00000179323.2	808	2	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	0	881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGTCTGTGCCTGATGCC	NA	False	NA	27	True	CATAAA	-18	NA	125990445	125992374	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_125990501_125991621
ENSMUST00000179324.2	chr13	+	2764	3	FSM	ENSMUSG00000078952.10	ENSMUST00000179324.2	2764	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	70.5	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	21	True	AATAAA	-18	NA	97619208	97633515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_97619286_97619456_97619541_97630912
ENSMUST00000179347.3	chr8	+	1149	4	FSM	ENSMUSG00000095026.3	ENSMUST00000179347.3	1149	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	14.4299072146089	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGTAAAGTCTCACGATT	NA	False	NA	NA	False	CATAAA	-1	NA	71171191	71175281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71171282_71173068_71173378_71174425_71174587_71174692
ENSMUST00000179348.8	chrX	+	2028	7	FSM	ENSMUSG00000094885.8	ENSMUST00000179348.8	2028	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	5.58022301426107	291	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTGTGTTTGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	147857277	147921148	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_147857370_147898081_147898208_147898926_147899007_147902668_147903628_147912815_147912898_147913703_147913754_147920509
ENSMUST00000179353.8	chr1	+	3219	13	FSM	ENSMUSG00000116048.2	ENSMUST00000179353.8	3219	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	266.051999929838	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406714	93437455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_93406791_93416849_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
ENSMUST00000179418.9	chr17	-	481	5	FSM	ENSMUSG00000024309.16	ENSMUST00000179418.9	481	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	500.831808095293	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCCTACTTTACAGCCA	NA	False	NA	-19	True	AATAAA	-13	NA	34159284	34157896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997_34159080_34159270
ENSMUST00000179422.8	chr9	-	1462	8	FSM	ENSMUSG00000066839.13	ENSMUST00000179422.8	1462	8	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_7	78.0418516710419	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5921	False	NA	-9	True	AATAAA	-15	NA	21996698	21983541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21996644
ENSMUST00000179489.8	chr7	+	3608	20	FSM	ENSMUSG00000038563.15	ENSMUST00000179489.8	3608	20	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	25.8006420500325	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCGTTTGTTTAATTAAT	NA	False	NA	38	True	AATAAA	-43	NA	82297821	82427060	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_82297858_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086_82347226_82399999_82400132_82402781_82402930_82411642_82412623_82421664_82421850_82426698
ENSMUST00000179498.2	chr4	+	434	5	FSM	ENSMUSG00000078773.12	ENSMUST00000179498.2	434	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	99.672902536246	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGCACAAGAAGAGGAAGCT	-25	True	NA	NA	False	AAGAAA	-13	NA	11558921	11593653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11583676_11583723_11593620
ENSMUST00000179539.9	chr17	-	752	4	FSM	ENSMUSG00000079710.11	ENSMUST00000179539.9	752	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	7.25718035235908	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATCCTTCAAAATAAATGA	8865	False	NA	NA	False	NA	NA	NA	15230444	15216077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_15216212_15219403_15219560_15222241_15222449_15230189
ENSMUST00000179554.3	chr17	-	771	5	FSM	ENSMUSG00000095677.3	ENSMUST00000179554.3	771	5	0	0	0	0	multi-exon	FALSE	canonical	3	5415	junction_4	1216.82506959711	40087	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6923299	6916336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_6916737_6917085_6917164_6917501_6917626_6920709_6920752_6923172
ENSMUST00000179569.3	chr17	+	771	5	FSM	ENSMUSG00000096255.3	ENSMUST00000179569.3	771	5	0	0	0	0	multi-exon	TRUE	canonical	3	3024	junction_1	2440.4692555941	33151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6697510	6703695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295
ENSMUST00000179600.8	chrX	-	1650	9	FSM	ENSMUSG00000058328.14	ENSMUST00000179600.8	1650	9	0	0	0	0	multi-exon	TRUE	canonical	3	263	junction_8	84.6742840241357	2703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72336582	72151240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72336481
ENSMUST00000179626.3	chrX	+	957	6	FSM	ENSMUSG00000095180.11	ENSMUST00000179626.3	957	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1594.13919091151	10447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTAGTGATTCGAGTAA	8630	False	NA	17	True	ATTAAA	-14	NA	36891760	36897308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_36891896_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
ENSMUST00000179636.3	chr10	+	3543	12	FSM	ENSMUSG00000019894.15	ENSMUST00000179636.3	3543	12	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	32.2574867983458	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGTTCGTGTCCCTCATT	NA	False	NA	NA	False	AATAAA	-15	NA	103203668	103255236	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_103204015_103224887_103225203_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
ENSMUST00000179758.8	chr13	-	1046	8	FSM	ENSMUSG00000058022.15	ENSMUST00000179758.8	1046	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	8.48046975980333	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTCTTGGGATCTCCT	NA	False	NA	-35	True	AATAAA	-13	NA	42001092	41918065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_41918090_41918120_41918269_41920811_41920964_41930983_41931100_41967690_41967793_41969613_41969749_41981618_41981862_42000966
ENSMUST00000179781.8	chr10	+	1261	7	FSM	ENSMUSG00000023175.16	ENSMUST00000179781.8	1261	7	0	0	0	0	multi-exon	FALSE	canonical	3	6175	junction_5	429.072416835304	41635	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTCACTACTTGAA	NA	False	NA	21	True	AATAAA	-15	NA	79540324	79547803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547089_79547115_79547327
ENSMUST00000179852.9	chr13	-	1246	8	FSM	ENSMUSG00000021368.16	ENSMUST00000179852.9	1246	8	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_7	48.9393627307283	1679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCGTGGCCATGATG	NA	False	NA	-17	True	AGTAAA	-16	NA	43324960	43305215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_43305457_43306545_43306676_43308164_43308311_43312738_43312877_43318754_43318943_43322249_43322331_43323277_43323424_43324784
ENSMUST00000179869.3	chr13	+	3245	10	FSM	ENSMUSG00000093930.3	ENSMUST00000179869.3	3245	10	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_1	79.8526420630178	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	15	True	AATAAA	-15	NA	120151981	120169618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_120152050_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
ENSMUST00000179954.8	chr1	+	630	4	FSM	ENSMUSG00000073702.12	ENSMUST00000179954.8	630	4	0	0	0	0	multi-exon	FALSE	canonical	3	8615	junction_3	1758.8270712798	140513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCAGGGTTTGGTTTTCCT	NA	False	NA	25	True	AATAAA	-14	NA	39407009	39410446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_39407337_39409094_39409221_39410034_39410148_39410382
ENSMUST00000179990.8	chr10	+	566	4	FSM	ENSMUSG00000020022.18	ENSMUST00000179990.8	566	4	0	0	0	0	multi-exon	FALSE	canonical	3	3293	junction_3	309.018877524767	29595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTGTCTTGTGCGTTCA	NA	False	NA	13	True	ATTAAA	-13	NA	94034865	94056810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_94034993_94035811_94035895_94039149_94039238_94056542
ENSMUST00000180020.8	chr6	+	2280	3	FSM	ENSMUSG00000042079.14	ENSMUST00000180020.8	2280	3	0	0	0	0	multi-exon	FALSE	canonical	3	4878	junction_1	99	5056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGCACAGCTTATGTACT	NA	False	NA	NA	False	AATAAA	-16	NA	117894254	117902582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_117894560_117896059_117896121_117900668
ENSMUST00000180025.8	chrX	+	2812	5	FSM	ENSMUSG00000072964.15	ENSMUST00000180025.8	2812	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	89.3168517134365	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTGTGTTTGTGTATA	NA	False	NA	7	True	AATAAA	-18	NA	134786599	134791827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_134786837_134787593_134787676_134788009_134788067_134789120_134789229_134789499
ENSMUST00000180036.8	chr10	+	1044	6	FSM	ENSMUSG00000035242.16	ENSMUST00000180036.8	1044	6	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_2	2881.68367452085	31922	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTGTGTCCTGCTGC	NA	False	NA	19	True	AATAAA	-19	NA	80662519	80665124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80662740_80664070_80664129_80664129_80664217_80664294_80664468_80664544_80664631_80664704
ENSMUST00000180043.8	chr17	+	1447	7	FSM	ENSMUSG00000040482.17	ENSMUST00000180043.8	1447	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	19.7434940057619	464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTGCTGTGTCTGAATG	2976	False	NA	30	True	AATAAA	-19	NA	35055994	35058162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_35056193_35056368_35056731_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
ENSMUST00000180072.8	chr11	-	486	5	FSM	ENSMUSG00000034566.11	ENSMUST00000180072.8	486	5	0	0	0	0	multi-exon	FALSE	canonical	3	2962	junction_4	275.878936310839	4751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCCTGGGACGGAGCCC	NA	False	NA	-62	True	AAAAAG	-43	NA	115309333	115306573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211
ENSMUST00000180077.7	chr17	+	602	5	FSM	ENSMUSG00000062691.11	ENSMUST00000180077.7	602	5	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_1	395.694563394546	5815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTGTGGGTCTGCAG	NA	False	NA	NA	False	AATAAA	-22	NA	79223928	79227735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_79223955_79225785_79225902_79226484_79226530_79227187_79227273_79227405
ENSMUST00000180088.2	chr11	+	1921	9	FSM	ENSMUSG00000034412.14	ENSMUST00000180088.2	1921	9	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_8	26.2963875846094	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGCTGTGTATAGTTAG	1582	False	NA	21	True	AATAAA	-12	NA	4136821	4165502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_4137100_4155756_4155857_4159925_4160034_4162140_4162248_4162784_4162900_4162977_4163044_4163556_4163747_4163836_4163992_4164700
ENSMUST00000180095.4	chr6	+	1475	9	FSM	ENSMUSG00000030120.15	ENSMUST00000180095.4	1475	9	0	0	0	0	multi-exon	FALSE	canonical	3	3449	junction_8	252.103029533562	12395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGATTCTGGCTGTACTT	NA	False	NA	27	True	AATAAA	-17	NA	124908394	124913108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912585
ENSMUST00000180140.8	chr17	+	693	4	FSM	ENSMUSG00000023904.11	ENSMUST00000180140.8	693	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	183.637928786209	4502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892569	23894201	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_23892678_23892942_23893043_23893508_23893650_23893857
ENSMUST00000180159.8	chr15	+	489	4	FSM	ENSMUSG00000045996.13	ENSMUST00000180159.8	489	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_3	234.864973028239	9554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCATTTCTATTCAATGT	109	False	NA	NA	False	ATTAAA	-12	NA	36174155	36177153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_36174228_36175132_36175203_36175529_36175623_36176899
ENSMUST00000180180.8	chr9	-	1676	9	FSM	ENSMUSG00000066839.13	ENSMUST00000180180.8	1676	9	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_8	49.2772767104677	1015	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5885	False	NA	-9	True	AATAAA	-15	NA	21996734	21983541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995505_21996652
ENSMUST00000180283.2	chr17	-	2368	9	FSM	ENSMUSG00000012296.17	ENSMUST00000180283.2	2368	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	136.842461885922	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTAATCCCCTTTTTGCT	5806	False	NA	-7	True	AATAAA	-41	NA	46593952	46568776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46593885
ENSMUST00000180286.2	chr2	-	1531	4	FSM	ENSMUSG00000027341.11	ENSMUST00000180286.2	1531	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	263.641591728029	2262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGTGTGTTGTTATTG	4889	False	NA	-4	True	TATAAA	-18	NA	132089708	132081413	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089552
ENSMUST00000180341.2	chr6	+	1922	1	FSM	ENSMUSG00000042079.14	ENSMUST00000180341.2	1922	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2645	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCACAGCTTATGTACTC	204	False	NA	NA	False	AATAAA	-17	NA	117900661	117902583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_117900700_117902600
ENSMUST00000180358.3	chr14	-	2032	8	FSM	ENSMUSG00000000776.14	ENSMUST00000180358.3	2032	8	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_3	15.9910689359494	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAGTCTATTTCCAAAT	1888	False	NA	-10	True	AATAAA	-17	NA	70680730	70676235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_70677019_70677157_70677311_70677453_70677720_70678038_70678208_70678476_70678602_70678743_70678896_70679791_70679836_70680390
ENSMUST00000180365.9	chr9	-	2014	9	FSM	ENSMUSG00000032182.16	ENSMUST00000180365.9	2014	9	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_8	18.6463803457937	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTCACGCCCATGGTG	6086	False	NA	-20	True	AATAAA	-13	NA	21504106	21499981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504022
ENSMUST00000180422.2	chr13	+	955	1	FSM	ENSMUSG00000097906.2	ENSMUST00000180422.2	955	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	518	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCGCCAAAGCAACCAAGT	NA	False	NA	NA	False	NA	NA	NA	67958364	67959319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_67958400_67959300
ENSMUST00000180432.9	chr15	+	1563	9	FSM	ENSMUSG00000097039.9	ENSMUST00000180432.9	1563	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	11.0163231161763	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTATTGAAGTCATGATT	NA	False	NA	23	True	AATAAA	-31	NA	61909895	62121373	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_61910051_61978996_61979315_62021087_62021202_62031845_62031978_62047315_62047398_62114022_62114151_62114282_62114411_62116567_62116707_62121006
ENSMUST00000180443.3	chr11	+	1235	3	FSM	ENSMUSG00000097887.3	ENSMUST00000180443.3	1235	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTTGAGTGTTGTACC	8238	False	NA	NA	False	AATAAA	-22	NA	50127838	50179666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_50128207_50175242_50175422_50178978
ENSMUST00000180530.3	chr18	-	1269	2	FSM	ENSMUSG00000097666.3	ENSMUST00000180530.3	1269	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACTGGATTCTTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	77820439	77817195	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_77818179_77820153
ENSMUST00000180563.10	chr9	-	947	4	FSM	ENSMUSG00000097195.11	ENSMUST00000180563.10	947	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	498.70855439046	2773	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404944	88403104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88403502_88403702_88403770_88404359_88404435_88404536
ENSMUST00000180765.2	chr19	-	1073	6	FSM	ENSMUSG00000037349.10	ENSMUST00000180765.2	1073	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	58.0427428710946	969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTTAGCTTCTGCTGCT	6965	False	NA	-3	True	AATAAA	-17	NA	6973485	6970385	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6970571_6970800_6970895_6971029_6971128_6972038_6972138_6972609_6973104_6973382
ENSMUST00000180777.3	chr13	-	672	3	FSM	ENSMUSG00000097326.3	ENSMUST00000180777.3	672	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTTGTATGTGTGATA	NA	False	NA	1	True	ATTAAA	-15	NA	48427360	48425888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_48426292_48426385_48426533_48427238
ENSMUST00000180879.8	chr7	+	725	4	FSM	ENSMUSG00000097277.8	ENSMUST00000180879.8	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	29.9777695412228	612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAAAATTTTTTGGGTAT	NA	False	NA	4	True	AATAAA	-9	NA	81173318	81181242	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_81173425_81178534_81178689_81179094_81179276_81180958
ENSMUST00000180923.2	chr16	-	737	2	FSM	ENSMUSG00000097318.3	ENSMUST00000180923.2	737	2	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	0	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTGGAATTCTCTCCTT	NA	False	NA	-3	True	ATTAAA	-15	NA	33201097	33200224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_33200750_33200885
ENSMUST00000180932.3	chr17	+	821	2	FSM	ENSMUSG00000097523.3	ENSMUST00000180932.3	821	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTCTCAATATTTCACTA	458	False	NA	NA	False	AATATA	-18	NA	26204781	26207548	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26205011_26206956
ENSMUST00000180967.3	chr16	-	1580	2	FSM	ENSMUSG00000097768.3	ENSMUST00000180967.3	1580	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACACCTTTAAATAATA	6571	False	NA	NA	False	AATAAA	-28	NA	93591789	93589023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_93590271_93591456
ENSMUST00000181016.3	chr1	+	479	3	FSM	ENSMUSG00000097398.3	ENSMUST00000181016.3	479	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	3	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTGGTCTTGGCTCCTT	NA	False	NA	17	True	NA	NA	NA	88682611	88683458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_88682681_88682805_88683013_88683255
ENSMUST00000181036.2	chr10	+	1197	2	FSM	ENSMUSG00000090854.10	ENSMUST00000181036.2	1197	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104030317	104032383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_104030363_104031231
ENSMUST00000181091.8	chr10	-	1876	11	FSM	ENSMUSG00000036112.16	ENSMUST00000181091.8	1876	11	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_8	660.841047453924	5252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGATACATTTTAATGT	NA	False	NA	-17	True	AATAAA	-15	NA	93725637	93696790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715436_93715934_93716001_93722855_93722964_93725399
ENSMUST00000181159.8	chr8	+	682	4	FSM	ENSMUSG00000097248.10	ENSMUST00000181159.8	682	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	80.2509951478623	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	198	False	NA	7	True	AATAAA	-15	NA	88199439	88252182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_88199589_88248363_88248442_88250923_88251056_88251859
ENSMUST00000181217.8	chr10	-	1984	11	FSM	ENSMUSG00000036112.16	ENSMUST00000181217.8	1984	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	666.978530389097	5531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGATACATTTTAATGT	NA	False	NA	-17	True	AATAAA	-15	NA	93725646	93696790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715535_93715934_93716001_93722855_93722964_93725399
ENSMUST00000181220.2	chr15	-	1115	2	FSM	ENSMUSG00000097613.2	ENSMUST00000181220.2	1115	2	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTCATGTATTTATTTTG	7404	False	NA	NA	False	NA	NA	NA	81686814	81684991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_81685903_81686610
ENSMUST00000181225.2	chr6	+	1499	3	FSM	ENSMUSG00000097616.8	ENSMUST00000181225.2	1499	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	3.5	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACTGTTATGGATGATAG	28	False	NA	NA	False	AATAAA	-22	NA	13871567	13896421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_13871627_13881271_13881381_13895090
ENSMUST00000181233.2	chr12	+	438	1	FSM	ENSMUSG00000096942.2	ENSMUST00000181233.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25652	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	NA	False	NA	NA	False	NA	NA	NA	110864547	110864985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_110864500_110865000
ENSMUST00000181287.5	chr10	+	1246	2	FSM	ENSMUSG00000097427.6	ENSMUST00000181287.5	1246	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	837	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	103987357	103989826	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_103987464_103988686
ENSMUST00000181488.2	chr5	-	589	2	FSM	ENSMUSG00000097863.2	ENSMUST00000181488.2	589	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATCCAACCGTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	110144264	110143376	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_110143686_110143984
ENSMUST00000181516.2	chr13	-	1094	3	FSM	ENSMUSG00000097483.3	ENSMUST00000181516.2	1094	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	24	780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGAACTGTTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	66667587	66651223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_66652035_66653161_66653268_66667410
ENSMUST00000181524.8	chr1	+	413	3	FSM	ENSMUSG00000097113.8	ENSMUST00000181524.8	413	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	3	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTGCTTTGTTTCT	NA	False	NA	NA	False	AATAAA	-22	NA	136611133	136618542	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_136611212_136616481_136616549_136618274
ENSMUST00000181573.2	chr13	-	382	2	FSM	ENSMUSG00000097333.8	ENSMUST00000181573.2	382	2	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	0	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGGCTATTTGGTTTGTT	9222	False	NA	NA	False	AATAAA	-20	NA	67674296	67669157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_67669439_67674195
ENSMUST00000181574.6	chr5	+	1375	4	FSM	ENSMUSG00000097180.6	ENSMUST00000181574.6	1375	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	11.0453610171873	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCGTCAGGTTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	24055594	24060036	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_24055620_24057118_24057154_24057715_24057759_24058764
ENSMUST00000181586.8	chr8	+	765	5	FSM	ENSMUSG00000031818.13	ENSMUST00000181586.8	765	5	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_1	3735.25865904893	93699	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	28	True	AATAAA	-17	NA	121394960	121400946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_121395115_121396047_121396122_121399463_121399632_121399959_121400092_121400709
ENSMUST00000181606.2	chr10	+	964	6	FSM	ENSMUSG00000097053.2	ENSMUST00000181606.2	964	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0.8	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGATGGCCGACAGAGCC	NA	False	NA	NA	False	NA	NA	NA	22100178	22129718	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_22100267_22116417_22116673_22117008_22117282_22127849_22127968_22128770_22128854_22129571
ENSMUST00000181614.2	chr10	-	548	2	FSM	ENSMUSG00000097327.8	ENSMUST00000181614.2	548	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGACTGCCTTGGTTTT	NA	False	NA	-8	True	NA	NA	NA	22024722	22020200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_22020414_22024387
ENSMUST00000181615.8	chr10	+	1258	2	FSM	ENSMUSG00000090854.10	ENSMUST00000181615.8	1258	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104029902	104032383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_104030009_104031231
ENSMUST00000181645.8	chr10	+	1579	9	FSM	ENSMUSG00000053219.16	ENSMUST00000181645.8	1579	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	39.8708853676464	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	5	True	AATAAA	-15	NA	22034467	22059816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_22034618_22047902_22048001_22049079_22049150_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
ENSMUST00000181658.2	chr17	-	1179	5	FSM	ENSMUSG00000097624.3	ENSMUST00000181658.2	1179	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	9.14808723176599	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATGTCTCTTTTCTTTCT	NA	False	NA	-8	True	GATAAA	-12	NA	15461045	15451846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_15452674_15453041_15453145_15454190_15454265_15460531_15460624_15460962
ENSMUST00000181742.2	chr13	+	1723	2	FSM	ENSMUSG00000097848.3	ENSMUST00000181742.2	1723	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGACGACTGGTCTTTAGC	6940	False	NA	NA	False	NA	NA	NA	99237213	99244088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_99237334_99242485
ENSMUST00000181767.8	chr13	-	2656	4	FSM	ENSMUSG00000097333.8	ENSMUST00000181767.8	2656	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	7.71722460186015	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTGGTCATAGTGTTTA	9222	False	NA	NA	False	NA	NA	NA	67674296	67663899	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_67666232_67668744_67668841_67669311_67669439_67674195
ENSMUST00000181776.2	chr8	+	599	3	FSM	ENSMUSG00000097812.2	ENSMUST00000181776.2	599	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	2125	False	NA	NA	False	AAGAAA	-26	NA	122576932	122587360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_122577154_122586834_122586957_122587104
ENSMUST00000181833.2	chr3	-	986	2	FSM	ENSMUSG00000097639.3	ENSMUST00000181833.2	986	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTGCTCCAAATCCTGAA	NA	False	NA	-3	True	NA	NA	NA	41447627	41443238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_41444172_41447574
ENSMUST00000181837.3	chr3	-	987	3	FSM	ENSMUSG00000096935.6	ENSMUST00000181837.3	987	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	2	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCATTTCTTTCTTCCTT	NA	False	NA	NA	False	AATAAA	-16	NA	88085092	88078862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88079566_88083157_88083243_88084893
ENSMUST00000181873.8	chr5	-	626	5	FSM	ENSMUSG00000097772.8	ENSMUST00000181873.8	626	5	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_4	12.3389626792531	3759	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTAGAATGTTGTGTT	NA	False	NA	-7	True	AATAAA	-31	NA	100577394	100568700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_100568832_100569826_100569901_100574594_100574664_100576955_100577098_100577184
ENSMUST00000181948.2	chr8	+	766	4	FSM	ENSMUSG00000031812.17	ENSMUST00000181948.2	766	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	1182.02096240107	1842	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTGCCAATAAAAAGATCAA	9968	False	NA	-7	True	AATAAA	-19	NA	122317222	122323751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_122317304_122320228_122320390_122322724_122322832_122323334
ENSMUST00000181949.3	chr1	-	2052	4	FSM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	26.1576417557513	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCAAAATAGATTCTGTTA	NA	False	NA	NA	False	AATAAA	-19	NA	57416703	57398380	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_57399823_57401724_57401923_57414406_57414679_57416563
ENSMUST00000181960.3	chr16	+	574	3	FSM	ENSMUSG00000097290.10	ENSMUST00000181960.3	574	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_2	32	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGTTGAAAGGTCCATG	NA	False	NA	30	True	AATAAA	-35	NA	21613111	21627790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_21613197_21614599_21614726_21627427
ENSMUST00000181967.3	chr9	+	843	3	FSM	ENSMUSG00000097651.3	ENSMUST00000181967.3	843	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	1.5	616	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGGCTGATACTTGCT	NA	False	NA	16	True	NA	NA	NA	58362404	58376918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_58362640_58374083_58374201_58376427
ENSMUST00000182046.2	chr8	-	332	2	FSM	ENSMUSG00000098120.2	ENSMUST00000182046.2	332	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGACCACCTCAGCCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	106364117	106350981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_106351108_106363911
ENSMUST00000182047.2	chr5	+	2944	8	FSM	ENSMUSG00000029110.14	ENSMUST00000182047.2	2944	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1054.04635300622	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTGAACTAAGTATCTTT	NA	False	NA	13	True	AATAAA	-3	NA	34494275	34510768	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_34494442_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
ENSMUST00000182051.2	chr1	-	388	1	FSM	ENSMUSG00000098201.2	ENSMUST00000182051.2	388	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	185	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAATGTAAATCATAAATA	NA	False	NA	NA	False	AAAACA	-31	NA	7206810	7206422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_7206400_7206800
ENSMUST00000182111.8	chr7	-	585	3	FSM	ENSMUSG00000051811.15	ENSMUST00000182111.8	585	3	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_1	77.5	6614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756022	4754790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4754975_4755059_4755161_4755722
ENSMUST00000182145.3	chr8	+	1402	1	FSM	ENSMUSG00000098211.3	ENSMUST00000182145.3	1402	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAAGGGTCTGGAGA	NA	False	NA	NA	False	NA	NA	NA	122268818	122270220	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_122268800_122270200
ENSMUST00000182152.2	chr10	-	847	4	FSM	ENSMUSG00000020107.11	ENSMUST00000182152.2	847	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	143.861816414997	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGAGATGTTTTTCACATT	NA	False	NA	NA	False	NA	NA	NA	59838591	59824407	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838239
ENSMUST00000182163.2	chr16	+	1206	5	FSM	ENSMUSG00000034206.16	ENSMUST00000182163.2	1206	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	14.422205101856	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTATTTATTTGTTT	3777	False	NA	NA	False	ATTAAA	-16	NA	36832176	36837952	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_36832422_36833468_36833811_36835440_36835572_36836674_36836771_36837560
ENSMUST00000182174.8	chr8	+	498	4	FSM	ENSMUSG00000097248.10	ENSMUST00000182174.8	498	4	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	31.0590834807897	597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGTGTGTCCATTCCTCC	198	False	NA	6	True	AATAAA	-14	NA	88199439	88252181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_88199589_88248363_88248442_88250923_88251056_88252042
ENSMUST00000182183.8	chr10	+	838	7	FSM	ENSMUSG00000020056.17	ENSMUST00000182183.8	838	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	103.215658803411	2525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATGGTTTGTTGACCAA	NA	False	NA	13	True	AATAAA	-16	NA	88037013	88081868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055114_88055223_88070255_88070321_88081617
ENSMUST00000182209.8	chr17	+	1977	5	FSM	ENSMUSG00000034165.17	ENSMUST00000182209.8	1977	5	0	0	0	0	multi-exon	FALSE	canonical	3	3602	junction_2	267.432701814868	1381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47904394	47910614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
ENSMUST00000182232.9	chr9	-	826	6	FSM	ENSMUSG00000097195.11	ENSMUST00000182232.9	826	6	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	292.278634183205	7034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88405027	88403102	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404640_88404903
ENSMUST00000182309.8	chr5	-	1595	10	FSM	ENSMUSG00000029422.16	ENSMUST00000182309.8	1595	10	0	0	0	0	multi-exon	FALSE	canonical	3	403	junction_7	46.2523939987681	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACCCACTTCCATTAAAC	4321	False	NA	NA	False	NA	NA	NA	123887477	123867069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123887351
ENSMUST00000182328.8	chr7	-	1391	7	FSM	ENSMUSG00000030591.18	ENSMUST00000182328.8	1391	7	0	0	0	0	multi-exon	FALSE	canonical	3	1581	junction_5	143.933626678719	4822	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTATCCAGTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	28879977	28873612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
ENSMUST00000182402.8	chr17	+	1275	10	FSM	ENSMUSG00000098090.9	ENSMUST00000182402.8	1275	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	42.4223328093547	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGGGTGTCCCCTCC	NA	False	NA	NA	False	AATAAA	-11	NA	95057527	95082557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
ENSMUST00000182433.8	chr5	-	1195	7	FSM	ENSMUSG00000035325.17	ENSMUST00000182433.8	1195	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	364.036361126498	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAGTTAGTCTTTATTTA	NA	False	NA	-8	True	ATTAAA	-18	NA	100521343	100509508	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100517454_100517494_100521283
ENSMUST00000182498.8	chr1	-	559	3	FSM	ENSMUSG00000098234.8	ENSMUST00000182498.8	559	3	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_2	159	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	-15	True	AATAAA	-12	NA	10014328	10012249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_10012617_10012834_10012943_10014244
ENSMUST00000182532.8	chr3	+	2059	8	FSM	ENSMUSG00000027777.16	ENSMUST00000182532.8	2059	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	163.233149894529	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAAGCACTGGCTGTGTC	NA	False	NA	39	True	AATAAA	-41	NA	68375515	68533814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_68375563_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
ENSMUST00000182533.8	chr17	+	3122	21	FSM	ENSMUSG00000071054.13	ENSMUST00000182533.8	3122	21	0	0	0	0	multi-exon	TRUE	canonical	3	97	junction_18	119.307543768196	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTCATTTTTGTTCG	7977	False	NA	-40	True	NA	NA	NA	56891973	56913219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912550_56912658_56912796_56912864_56912975
ENSMUST00000182546.8	chr7	-	1964	5	FSM	ENSMUSG00000098022.8	ENSMUST00000182546.8	1964	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	19.6086715511276	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATGTGTTCCACTGTGTC	NA	False	NA	NA	False	ATTAAA	-14	NA	29771558	29755462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_29756945_29765665_29765793_29767489_29767576_29769409_29769574_29771453
ENSMUST00000182580.8	chr1	-	473	4	FSM	ENSMUSG00000098234.8	ENSMUST00000182580.8	473	4	0	0	0	0	multi-exon	TRUE	canonical	3	370	junction_3	129.892263049036	14182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCGGACTTTTTGTCAAT	NA	False	NA	1	True	AATAAA	-15	NA	10014343	10012183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_10012381_10012547_10012617_10012834_10012943_10014244
ENSMUST00000182602.2	chr5	-	733	3	FSM	ENSMUSG00000029551.14	ENSMUST00000182602.2	733	3	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	75.5	1077	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGGCCTTCTCAGTG	7355	False	NA	-33	True	AATAAA	-10	NA	139812598	139809367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_139809829_139811882_139812120_139812563
ENSMUST00000182709.8	chr5	+	3046	8	FSM	ENSMUSG00000029110.14	ENSMUST00000182709.8	3046	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	927.964241042219	1383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTCATTTATTCAGTTAT	NA	False	NA	28	True	AATAAA	-18	NA	34493632	34510783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
ENSMUST00000182714.2	chr19	-	690	2	FSM	ENSMUSG00000042694.18	ENSMUST00000182714.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_1	0	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCCTGGGCTACATAAGA	NA	False	NA	NA	False	NA	NA	NA	47525485	47524353	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_47524811_47525252
ENSMUST00000182719.8	chr3	+	2156	8	FSM	ENSMUSG00000027777.16	ENSMUST00000182719.8	2156	8	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	72.6321455791344	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACGTCCTTTTGCTCACTA	NA	False	NA	21	True	AATAAA	-23	NA	68401540	68533796	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_68401703_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
ENSMUST00000182742.2	chr1	-	400	4	FSM	ENSMUSG00000098234.8	ENSMUST00000182742.2	400	4	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	223.143202649977	8843	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	-15	True	AATAAA	-12	NA	10014342	10012249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_10012375_10012547_10012617_10012834_10012943_10014244
ENSMUST00000182746.2	chr7	-	2374	9	FSM	ENSMUSG00000058447.9	ENSMUST00000182746.2	2374	9	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_6	43.1955943934101	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCCACTGTGTCCCAG	9890	False	NA	NA	False	ATTAAA	-18	NA	29789835	29755458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29771453_29771565_29780515_29780643_29786524_29786585_29789712
ENSMUST00000182758.2	chr8	+	447	4	FSM	ENSMUSG00000097248.10	ENSMUST00000182758.2	447	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	69.6866000191014	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	227	False	NA	7	True	AATAAA	-15	NA	88199761	88252182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_88199859_88248363_88248442_88250923_88251056_88252042
ENSMUST00000182811.2	chr11	+	2153	1	FSM	ENSMUSG00000086859.5	ENSMUST00000182811.2	2153	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	387	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGTTTCCATTGTTCAA	894	False	NA	19	True	AATAAA	-15	NA	116967627	116969780	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116967600_116969800
ENSMUST00000182814.8	chr15	-	1901	10	FSM	ENSMUSG00000098112.9	ENSMUST00000182814.8	1901	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	46.9160005873381	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAGGTGTCTTGCCCTGAA	NA	False	NA	-5	True	AATAAA	-17	NA	100567386	100538963	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_100539446_100542693_100543421_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100567293
ENSMUST00000182819.8	chr1	-	816	3	FSM	ENSMUSG00000098234.8	ENSMUST00000182819.8	816	3	0	0	0	0	multi-exon	FALSE	canonical	3	538	junction_1	75	1323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGTGGGCAGTAATTTC	NA	False	NA	-13	True	AATAAA	-14	NA	10013448	10012247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_10012381_10012547_10012617_10012834
ENSMUST00000182872.4	chr9	-	1145	3	FSM	ENSMUSG00000097195.11	ENSMUST00000182872.4	1145	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	595	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88403770_88404359_88404435_88404536
ENSMUST00000182873.2	chr19	-	802	3	FSM	ENSMUSG00000042694.18	ENSMUST00000182873.2	802	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	65	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAATTCATTTCCTTAT	NA	False	NA	-15	True	AATAAA	-22	NA	47497212	47489476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_47490157_47496244_47496318_47497163
ENSMUST00000182898.8	chr10	-	1852	4	FSM	ENSMUSG00000020107.11	ENSMUST00000182898.8	1852	4	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_3	30.5650490302604	4452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAGGAGTTGAAACTATT	NA	False	NA	2	True	AATAAA	-28	NA	59838957	59823230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838777
ENSMUST00000182912.2	chr10	-	566	3	FSM	ENSMUSG00000020107.11	ENSMUST00000182912.2	566	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	171	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGGACAGCCAGGGCTA	NA	False	NA	NA	False	NA	NA	NA	59838908	59824300	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_59824661_59826654_59826730_59838777
ENSMUST00000182955.8	chr5	-	1685	11	FSM	ENSMUSG00000029422.16	ENSMUST00000182955.8	1685	11	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_10	161.696753214157	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATTTTTTAGTTCATGA	4364	False	NA	NA	False	ATTAAA	-22	NA	123887434	123867029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123883559_123883653_123887351
ENSMUST00000182956.8	chr15	+	1342	7	FSM	ENSMUSG00000097039.9	ENSMUST00000182956.8	1342	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	11.4114951790825	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGAAGTCATGATTGTCA	NA	False	NA	27	True	AATAAA	-35	NA	61909834	62121377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_61910051_61978996_61979315_62047315_62047398_62047676_62047776_62114022_62114151_62114282_62114411_62121006
ENSMUST00000182980.8	chr8	+	2080	11	FSM	ENSMUSG00000002342.18	ENSMUST00000182980.8	2080	11	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	59.2504008425259	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCCTTACCATGGTG	5869	False	NA	7	True	AATAAA	-17	NA	70625057	70635500	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70625091_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
ENSMUST00000183032.8	chr9	-	3716	21	FSM	ENSMUSG00000032582.15	ENSMUST00000183032.8	3716	21	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_19	71.8828734817968	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTTGTTAAAGTTTTT	7513	False	NA	NA	False	AATAAA	-18	NA	107750020	107650761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730603_107737547_107737659_107749847
ENSMUST00000183037.3	chr10	+	735	6	FSM	ENSMUSG00000075706.12	ENSMUST00000183037.3	735	6	0	0	0	0	multi-exon	FALSE	canonical	3	7423	junction_4	813.086120899871	871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTCACCCTGGCTGCCT	1632	False	NA	-41	True	NA	NA	NA	79890298	79892228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
ENSMUST00000183087.2	chr18	+	588	3	FSM	ENSMUSG00000098098.8	ENSMUST00000183087.2	588	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	11.5	702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAATGACTTTCTTAATAG	NA	False	NA	17	True	AATAAA	-17	NA	61772723	61780543	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_61772840_61778233_61778437_61780274
ENSMUST00000183090.2	chr7	+	399	1	FSM	ENSMUSG00000078087.6	ENSMUST00000183090.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATTTTGGCTGAAAAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	55663763	55664162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_55663800_55664200
ENSMUST00000183146.2	chr12	+	1383	1	FSM	ENSMUSG00000098134.2	ENSMUST00000183146.2	1383	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1881	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCCTGGTGTGATCTTTC	NA	False	NA	10	True	AATAAA	-19	NA	84463969	84465352	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84464000_84465400
ENSMUST00000183211.8	chr15	-	2036	11	FSM	ENSMUSG00000098112.9	ENSMUST00000183211.8	2036	11	0	0	0	0	multi-exon	TRUE	canonical	2	83	junction_1	21.2593508837876	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTGCCCTGAACAGCCA	NA	False	NA	1	True	AATAAA	-23	NA	100567434	100538957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_100539446_100542693_100543421_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
ENSMUST00000183250.2	chr13	-	929	1	FSM	ENSMUSG00000098238.2	ENSMUST00000183250.2	929	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCCTGGACCACCTACC	NA	False	NA	NA	False	NA	NA	NA	97595585	97594656	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_97594700_97595600
ENSMUST00000183272.2	chr6	-	884	7	FSM	ENSMUSG00000057666.19	ENSMUST00000183272.2	884	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	3982.74732091081	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCATGGCCTACATGGCC	NA	False	NA	NA	False	AATGAA	-26	NA	125142539	125139026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140285_125142247_125142275_125142514
ENSMUST00000183309.8	chr10	-	1296	10	FSM	ENSMUSG00000038510.13	ENSMUST00000183309.8	1296	10	0	0	0	0	multi-exon	FALSE	canonical	3	1057	junction_7	76.0030863570847	3756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATGTCACAGTGTGG	6557	False	NA	42	True	TTTAAA	-17	NA	40123032	40099422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122948
ENSMUST00000183334.8	chr7	-	490	4	FSM	ENSMUSG00000051811.15	ENSMUST00000183334.8	490	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	338.542299999408	8219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATATTTGTTTCTTTTCTC	NA	False	NA	-12	True	AATAAA	-14	NA	4756022	4754793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4754975_4755059_4755172_4755722_4755849_4755951
ENSMUST00000183363.2	chr10	-	406	3	FSM	ENSMUSG00000063320.12	ENSMUST00000183363.2	406	3	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	131	2286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTAGGGGGCTCAATGGC	NA	False	NA	0	True	AGTAAA	-20	NA	82459024	82455859	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_82456052_82458541_82458659_82458927
ENSMUST00000183381.8	chr16	+	269	3	FSM	ENSMUSG00000096215.9	ENSMUST00000183381.8	269	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	2	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGTCTGGACTGTGTT	NA	False	NA	11	True	NA	NA	NA	4825215	4826173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_4825283_4825835_4825934_4826069
ENSMUST00000183431.8	chr14	-	536	4	FSM	ENSMUSG00000095304.10	ENSMUST00000183431.8	536	4	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_3	71.4624998785299	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCTAGCCATGACCTCT	NA	False	NA	-14	True	AATAAA	-18	NA	25902898	25888827	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_25888951_25889319_25889444_25891184_25891280_25902704
ENSMUST00000183477.8	chr16	+	247	3	FSM	ENSMUSG00000096215.9	ENSMUST00000183477.8	247	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	21.5	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGTCTGGACTGTGTT	NA	False	NA	11	True	NA	NA	NA	4825222	4826173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_4825283_4825835_4825919_4826069
ENSMUST00000183638.8	chr3	-	1723	11	FSM	ENSMUSG00000033439.13	ENSMUST00000183638.8	1723	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	35.5437758264369	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAATCTGAGTGTGAGGC	NA	False	NA	NA	False	AATAAA	-21	NA	116388509	116374743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_116375260_116376142_116376573_116378844_116378920_116379403_116379477_116382120_116382174_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
ENSMUST00000183725.2	chr14	-	439	4	FSM	ENSMUSG00000095304.10	ENSMUST00000183725.2	439	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	90.5796150724139	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGCTAGCCATGACCTC	NA	False	NA	-15	True	AATAAA	-17	NA	25902900	25888828	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_25888951_25889319_25889444_25891184_25891280_25902802
ENSMUST00000183971.8	chr7	-	401	4	FSM	ENSMUSG00000051811.15	ENSMUST00000183971.8	401	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	343.653895656662	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4755971	4754790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4754975_4755089_4755161_4755722_4755849_4755951
ENSMUST00000184126.3	chr9	+	496	2	FSM	ENSMUSG00000098332.3	ENSMUST00000184126.3	496	2	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_1	0	4400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAAGTTATTTATAAAGGT	NA	False	NA	NA	False	AATAAA	-19	NA	72946999	72950061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_72947148_72949713
ENSMUST00000184143.8	chr7	-	435	4	FSM	ENSMUSG00000051811.15	ENSMUST00000184143.8	435	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	378.537830195198	2354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756022	4754790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_4754975_4755106_4755161_4755722_4755849_4755951
ENSMUST00000184205.8	chr4	+	1054	8	FSM	ENSMUSG00000028863.14	ENSMUST00000184205.8	1054	8	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	102.612805025016	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGCCATTCTCTTGTTT	NA	False	NA	-10	True	NA	NA	NA	124978956	125003507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125001444_125001503_125002115_125002150_125003091
ENSMUST00000184297.8	chr17	-	2742	14	FSM	ENSMUSG00000024095.16	ENSMUST00000184297.8	2742	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	238.271661377061	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTGTTCATCTTCATT	3570	False	NA	NA	False	TATAAA	-15	NA	80369656	80337265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80352368_80352452_80356036_80356110_80356193_80356291_80357235_80357322_80358056_80358295_80360951_80361071_80369085
ENSMUST00000184326.8	chr9	-	2490	18	FSM	ENSMUSG00000035047.10	ENSMUST00000184326.8	2490	18	0	0	0	0	multi-exon	TRUE	canonical	3	91	junction_10	26.8261092670612	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCCTGGAGCCCACTCTC	NA	False	NA	NA	False	NA	NA	NA	21199249	21184931	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21185545_21186564_21186664_21186732_21186798_21187139_21187271_21187350_21187478_21187680_21187770_21187855_21187932_21190656_21190828_21191459_21191556_21191658_21191786_21192337_21192466_21192957_21193036_21193110_21193208_21193344_21193395_21193469_21193525_21196536_21196664_21197874_21197981_21198994
ENSMUST00000184535.8	chr2	-	1358	7	FSM	ENSMUSG00000027327.17	ENSMUST00000184535.8	1358	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	320.450724241133	4080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTCAGAGGTTAGCGGGG	NA	False	NA	-14	True	AATAAA	-15	NA	131001954	130988243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130991360_130991463_130993537_130993681_130995513_130995631_131001872
ENSMUST00000184552.2	chr3	-	1662	8	FSM	ENSMUSG00000019528.19	ENSMUST00000184552.2	1662	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	26.8115113870357	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGCTCTCTGATGGTAG	NA	False	NA	-65	True	NA	NA	NA	20209233	20176310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_20177029_20177285_20177337_20179421_20179642_20192180_20192308_20204702_20204866_20205116_20205292_20206893_20207030_20209161
ENSMUST00000184678.2	chr18	+	890	2	FSM	ENSMUSG00000098702.2	ENSMUST00000184678.2	890	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCGATCTCTCAGTTTGC	NA	False	NA	11	True	AATAAA	-25	NA	61859503	61868988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_61860074_61868668
ENSMUST00000184802.8	chr3	+	2542	9	FSM	ENSMUSG00000028180.19	ENSMUST00000184802.8	2542	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	274.019815661204	868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATCAAGTGTTGTTTAT	NA	False	NA	11	True	AATAAA	-12	NA	157239995	157253973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_157240112_157241970_157242024_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157252311
ENSMUST00000184862.8	chr2	+	1730	10	FSM	ENSMUSG00000039069.20	ENSMUST00000184862.8	1730	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_8	58.7703208880465	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712384	179727695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_179712409_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726106_179726243_179726383_179727172
ENSMUST00000184866.10	chrX	+	893	6	FSM	ENSMUSG00000095180.11	ENSMUST00000184866.10	893	6	0	0	0	0	multi-exon	FALSE	canonical	3	2792	junction_1	493.533626007388	45593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTAGTGATTCGAGTAA	8505	False	NA	17	True	ATTAAA	-14	NA	36891635	36897308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_36891707_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
ENSMUST00000184963.8	chr3	-	1616	11	FSM	ENSMUSG00000033439.13	ENSMUST00000184963.8	1616	11	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	31.2251501197352	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAATCTGAGTGTGAGGCT	NA	False	NA	NA	False	AATAAA	-22	NA	116388485	116374742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_116375260_116376142_116376374_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
ENSMUST00000185005.2	chr3	-	1505	3	FSM	ENSMUSG00000001018.16	ENSMUST00000185005.2	1505	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	341	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTTATTTTATTAT	NA	False	NA	-26	True	AATAAA	-23	NA	90398300	90395676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_90396901_90397460_90397580_90398138
ENSMUST00000185087.8	chr17	-	1064	6	FSM	ENSMUSG00000073406.11	ENSMUST00000185087.8	1064	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	193.961439466715	1459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394327_36394587_36394858_36395051
ENSMUST00000185147.8	chr16	+	399	4	FSM	ENSMUSG00000096215.9	ENSMUST00000185147.8	399	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	9.41629792788369	1016	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGTCTGGACTGTGTT	NA	False	NA	11	True	NA	NA	NA	4825215	4826173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_4825283_4825607_4825753_4825835_4825919_4826069
ENSMUST00000185168.8	chr10	-	469	3	FSM	ENSMUSG00000063320.12	ENSMUST00000185168.8	469	3	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	174.5	1577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTTCATAACCATCTATG	NA	False	NA	84	True	NA	NA	NA	82459062	82455775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_82456052_82458541_82458659_82458986
ENSMUST00000185384.7	chr3	-	435	4	FSM	ENSMUSG00000078784.9	ENSMUST00000185384.7	435	4	0	0	0	0	multi-exon	FALSE	canonical	3	4849	junction_3	245.494512271773	39981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTAAATCTTGTTAAT	NA	False	NA	0	True	AATAAA	-23	NA	14676345	14671343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_14671469_14672236_14672354_14674600_14674718_14676269
ENSMUST00000185393.7	chr1	-	366	3	FSM	ENSMUSG00000079658.10	ENSMUST00000185393.7	366	3	0	0	0	0	multi-exon	FALSE	canonical	3	2400	junction_2	162.5	3401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACCTGAAATTGCACTGGA	NA	False	NA	-99	True	NA	NA	NA	16718263	16713565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_16713703_16715909_16716054_16718178
ENSMUST00000185423.2	chr3	-	278	3	FSM	ENSMUSG00000078784.9	ENSMUST00000185423.2	278	3	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_1	2412	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTTTATTTCTTTAAAT	NA	False	NA	-9	True	AATAAA	-14	NA	14676314	14671352	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_14671469_14674600_14674718_14676269
ENSMUST00000185488.7	chr19	+	500	5	FSM	ENSMUSG00000071653.10	ENSMUST00000185488.7	500	5	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_2	1592.05511839258	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTCAACAGCACTGAGAAAG	NA	False	NA	NA	False	NA	NA	NA	8866278	8867910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8866329_8866487_8866613_8867000_8867092_8867366_8867465_8867774
ENSMUST00000185524.7	chr9	-	2820	12	FSM	ENSMUSG00000032468.12	ENSMUST00000185524.7	2820	12	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_11	21.8011297000487	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTTTATGTGTGTGATA	NA	False	NA	-1	True	AATAAA	-28	NA	99450702	99400856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
ENSMUST00000185535.2	chr1	-	471	3	FSM	ENSMUSG00000099843.2	ENSMUST00000185535.2	471	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0.5	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGATTTTAAAACAGCC	NA	False	NA	NA	False	NA	NA	NA	105918012	105907079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_105907355_105916748_105916834_105917901
ENSMUST00000185539.2	chr1	+	882	7	FSM	ENSMUSG00000018189.13	ENSMUST00000185539.2	882	7	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	477.081288205224	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCCATTCTTCAATTC	NA	False	NA	25	True	NA	NA	NA	143670454	143682679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_143670549_143672499_143672564_143674128_143674232_143675658_143675773_143677872_143677972_143678665_143678816_143682421
ENSMUST00000185558.2	chr11	+	427	3	FSM	ENSMUSG00000078572.4	ENSMUST00000185558.2	427	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	466	2513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAGATGATTTAATTTTG	NA	False	NA	19	True	NA	NA	NA	119989769	119991189	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_119989892_119989973_119990089_119990999
ENSMUST00000185612.3	chr7	+	716	4	FSM	ENSMUSG00000025481.13	ENSMUST00000185612.3	716	4	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	119.276522790065	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAATCTGAACCTATCATT	NA	False	NA	27	True	AATAAA	-17	NA	140415209	140417879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140415369_140415524_140415665_140416659_140416796_140417598
ENSMUST00000185641.7	chr15	+	731	5	Antisense	novelGene_ENSMUSG00000062683.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	109670	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGACACAAGCTAGAGGATC	NA	False	NA	NA	False	NA	NA	NA	102571298	102579562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr15_+_102571564_102573488_102573683_102574197_102574291_102576145_102576215_102579452
ENSMUST00000185676.7	chr1	-	3072	12	FSM	ENSMUSG00000026234.13	ENSMUST00000185676.7	3072	12	0	0	0	0	multi-exon	FALSE	canonical	3	5685	junction_11	703.281070741144	20754	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGACTTAATACTTCCT	NA	False	NA	-28	True	AGTAAA	-16	NA	86287086	86278216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
ENSMUST00000185681.2	chr3	-	625	2	FSM	ENSMUSG00000054426.12	ENSMUST00000185681.2	625	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTTGGCTATGGTG	908	False	NA	-5	True	NA	NA	NA	115681779	115675229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_115675488_115681412
ENSMUST00000185715.7	chr2	+	944	9	FSM	ENSMUSG00000002102.16	ENSMUST00000185715.7	944	9	0	0	0	0	multi-exon	FALSE	canonical	3	1724	junction_1	108.863374809896	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACTCAAGTGAAGGTGA	NA	False	NA	NA	False	NA	NA	NA	90884622	90888190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109
ENSMUST00000185742.2	chr1	+	478	2	FSM	ENSMUSG00000018189.13	ENSMUST00000185742.2	478	2	0	0	0	0	multi-exon	FALSE	canonical	3	1337	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTCCAGCCCTCAGCACA	NA	False	NA	NA	False	NA	NA	NA	143653013	143659980	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_143653215_143659703
ENSMUST00000185752.2	chr1	-	1901	9	FSM	ENSMUSG00000003051.14	ENSMUST00000185752.2	1901	9	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_7	94.095363860288	798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGCCTGAGCTCTCTGT	NA	False	NA	-10	True	AATAAA	-23	NA	135186176	135181316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135184965_135185352_135185521_135186086
ENSMUST00000185800.7	chr10	+	3142	13	FSM	ENSMUSG00000037608.17	ENSMUST00000185800.7	3142	13	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_3	210.967743716638	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATATTTGTAACTATCAA	2858	False	NA	9	True	AATAAA	-17	NA	20188282	20216009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198714_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20210244_20210392_20215454_20215668_20215797
ENSMUST00000186028.2	chr1	+	1389	7	FSM	ENSMUSG00000041763.15	ENSMUST00000186028.2	1389	7	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_5	33.8070505466932	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAAAAAAAAAGA	3312	False	NA	NA	False	AAAAAG	-23	NA	43973174	43996161	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630
ENSMUST00000186131.7	chr14	-	1005	4	FSM	ENSMUSG00000021917.17	ENSMUST00000186131.7	1005	4	0	0	0	0	multi-exon	FALSE	canonical	3	1717	junction_2	34.7658836600865	12663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACATTTGTTTTCTTTTT	NA	False	NA	-5	True	AATAAA	-16	NA	30723623	30721783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_30722180_30722634_30722722_30722800_30722861_30723161
ENSMUST00000186219.7	chr5	-	2904	5	FSM	ENSMUSG00000072774.11	ENSMUST00000186219.7	2904	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	90.557647385519	721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGAGGAATTGTGCGTT	NA	False	NA	-9	True	NA	NA	NA	105007936	104961034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_104963302_104964564_104964626_104964862_104964990_104965173_104965219_105007532
ENSMUST00000186239.7	chr10	-	2255	12	FSM	ENSMUSG00000019813.17	ENSMUST00000186239.7	2255	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_11	75.4430440303278	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	384	False	NA	4	True	AATAAA	-25	NA	41685609	41594836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41657479_41657547_41685568
ENSMUST00000186245.7	chr7	+	1926	12	FSM	ENSMUSG00000034867.17	ENSMUST00000186245.7	1926	12	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_4	23.6388110621019	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGTTCAGCCTGGGCTA	NA	False	NA	NA	False	NA	NA	NA	35285674	35308539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745
ENSMUST00000186325.2	chr1	-	1505	1	FSM	ENSMUSG00000087213.3	ENSMUST00000186325.2	1505	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7958	False	NA	NA	False	NA	NA	NA	64729787	64728282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_64728300_64729800
ENSMUST00000186364.2	chr9	+	1471	9	FSM	ENSMUSG00000032369.14	ENSMUST00000186364.2	1471	9	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_1	116.228223766863	1473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAGAGTTGATGTTACT	NA	False	NA	NA	False	NA	NA	NA	92132394	92154028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_92132478_92140100_92140128_92141326_92141408_92145085_92145331_92146698_92146742_92148443_92148665_92148764_92148927_92151867_92152030_92153581
ENSMUST00000186375.8	chr16	+	2350	7	FSM	ENSMUSG00000005982.15	ENSMUST00000186375.8	2350	7	0	0	0	0	multi-exon	FALSE	canonical	1	49	junction_5	41.1774614726713	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTCTAGTTATTGGC	NA	False	NA	39	True	AATAAA	-20	NA	3702546	3722634	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718742_3719646_3719990_3721329
ENSMUST00000186472.2	chr6	+	486	2	FSM	ENSMUSG00000100680.2	ENSMUST00000186472.2	486	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	330	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGTCTACACTCATTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	91417968	91418737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_91418141_91418423
ENSMUST00000186531.2	chr8	+	2137	1	FSM	ENSMUSG00000099881.2	ENSMUST00000186531.2	2137	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	703	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATGTTTTACCTGCTGCT	NA	False	NA	9	True	NA	NA	NA	123769204	123771341	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_123769200_123771300
ENSMUST00000186647.7	chr19	+	784	3	FSM	ENSMUSG00000071653.10	ENSMUST00000186647.7	784	3	0	0	0	0	multi-exon	FALSE	canonical	3	2965	junction_1	112.5	8127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATGAAGTGCAGCAGGG	NA	False	NA	32	True	AATAAA	-21	NA	8866262	8868110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8866613_8867366_8867465_8867774
ENSMUST00000186693.2	chr9	+	595	3	FSM	ENSMUSG00000035048.14	ENSMUST00000186693.2	595	3	0	0	0	0	multi-exon	FALSE	canonical	2	118	junction_1	703	6590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCCCACTTGGTTTTCGT	NA	False	NA	17	True	AATAAA	-17	NA	102503877	102511441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_102504118_102506961_102507088_102511212
ENSMUST00000186701.2	chr1	-	534	4	FSM	ENSMUSG00000079658.10	ENSMUST00000186701.2	534	4	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	1176.35397167123	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGAGAATGAAACCAACG	NA	False	NA	NA	False	TATAAA	-25	NA	16726849	16713695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16726519
ENSMUST00000186785.7	chr1	-	1964	2	FSM	ENSMUSG00000073538.11	ENSMUST00000186785.7	1964	2	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	0	1753	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAGAAAAAATATAA	NA	False	NA	NA	False	AATAAA	-5	NA	153283536	153280572	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_153282348_153283347
ENSMUST00000186863.7	chr9	-	725	4	FSM	ENSMUSG00000079427.11	ENSMUST00000186863.7	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_3	219.136182924378	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTTGTCAAAATGAATCA	NA	False	NA	NA	False	NA	NA	NA	88601640	88570744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88571039_88597540_88597803_88598546_88598617_88601541
ENSMUST00000186870.7	chr3	-	1174	3	FSM	ENSMUSG00000078784.9	ENSMUST00000186870.7	1174	3	0	0	0	0	multi-exon	FALSE	canonical	3	4849	junction_2	211	755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676321	14671348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_14672354_14674600_14674718_14676269
ENSMUST00000186913.2	chr11	+	401	2	FSM	ENSMUSG00000078572.4	ENSMUST00000186913.2	401	2	0	0	0	0	multi-exon	FALSE	canonical	3	883	junction_1	0	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATAAGGAACTGGTCTCTC	NA	False	NA	6	True	TATAAA	-6	NA	119989924	119991240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_119990085_119990999
ENSMUST00000187005.7	chr1	-	1359	11	FSM	ENSMUSG00000073643.12	ENSMUST00000187005.7	1359	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	274.811226117129	1027	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTTTGGGGGTATTTG	NA	False	NA	-31	True	TATAAA	-1	NA	79739455	79683073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_79683288_79683960_79684070_79685168_79685289_79686809_79686912_79691574_79691681_79692590_79692718_79694919_79695033_79696840_79696992_79711516_79711591_79717778_79717847_79739280
ENSMUST00000187048.7	chr1	-	3201	8	FSM	ENSMUSG00000026484.14	ENSMUST00000187048.7	3201	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	248.196597519805	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTATTAGATGTGTACTC	NA	False	NA	-5	True	CATAAA	-20	NA	151376562	151345155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_151347169_151347388_151347561_151348822_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151363022_151363207_151376469
ENSMUST00000187090.2	chr17	-	764	3	FSM	ENSMUSG00000100572.2	ENSMUST00000187090.2	764	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	7	1289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCCAGAGGAACGTATG	NA	False	NA	NA	False	NA	NA	NA	69584203	69582356	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_69582902_69583120_69583191_69584054
ENSMUST00000187168.7	chr16	+	1238	12	FSM	ENSMUSG00000022884.17	ENSMUST00000187168.7	1238	12	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_11	605.093586095477	546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGGGAGGAAAGGTGTGG	6053	False	NA	NA	False	NA	NA	NA	22926507	22931934	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
ENSMUST00000187199.3	chr17	+	827	4	FSM	ENSMUSG00000036552.20	ENSMUST00000187199.3	827	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	0.471404520791032	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGGTGGGTCTGTTTGTA	NA	False	NA	NA	False	AATAAA	-14	NA	15279715	15295255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_15279732_15281330_15281445_15286087_15286208_15294678
ENSMUST00000187324.8	chr9	-	1832	14	FSM	ENSMUSG00000023262.14	ENSMUST00000187324.8	1832	14	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_13	61.5898823628318	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCTTAATACTGTGGAC	NA	False	NA	-17	True	AATAAA	-17	NA	106315360	106310189	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106314000_106314087_106314153_106314827_106314933_106315331
ENSMUST00000187460.7	chr1	-	667	7	FSM	ENSMUSG00000026341.17	ENSMUST00000187460.7	667	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	965.56847101706	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCTGACGGGTACAGTAAT	NA	False	NA	NA	False	NA	NA	NA	125363444	125335085	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021_125363195_125363389
ENSMUST00000187500.7	chr1	-	3403	10	FSM	ENSMUSG00000025982.14	ENSMUST00000187500.7	3403	10	0	0	0	0	multi-exon	FALSE	canonical	3	1240	junction_5	107.350930234545	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTTGCTTTTAAAAATT	NA	False	NA	NA	False	AAAAAG	-13	NA	55066623	55042309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55055650_55055937_55056043_55058392_55058560_55066497
ENSMUST00000187542.7	chr6	+	782	4	FSM	ENSMUSG00000101191.7	ENSMUST00000187542.7	782	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.4142135623731	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTCAAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	125458325	125461641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_125458438_125459526_125459666_125460403_125460533_125461239
ENSMUST00000187578.2	chr15	-	1877	9	FSM	ENSMUSG00000060036.15	ENSMUST00000187578.2	1877	9	0	0	0	0	multi-exon	FALSE	canonical	3	16287	junction_8	5123.08483118326	12780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGTTTTCCCACATTT	3571	False	NA	-5	True	AATAAA	-13	NA	79967554	79961995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965985_79966590_79966784_79967524
ENSMUST00000187656.7	chr13	-	2310	4	FSM	ENSMUSG00000094942.8	ENSMUST00000187656.7	2310	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	23.1708629293104	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGATCAGTCG	NA	False	NA	-12	True	NA	NA	NA	62530991	62516141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_62518166_62519376_62519438_62519623_62519751_62530893
ENSMUST00000187763.2	chr10	+	485	2	FSM	ENSMUSG00000037535.6	ENSMUST00000187763.2	485	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTCTGTCTCTCCCAGT	6230	False	NA	NA	False	AATAAA	-38	NA	21295375	21301645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_21295418_21301202
ENSMUST00000187836.7	chr1	-	1862	14	FSM	ENSMUSG00000026209.16	ENSMUST00000187836.7	1862	14	0	0	0	0	multi-exon	FALSE	canonical	3	848	junction_13	52.2384156632446	1175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	-1	True	ATTAAA	-17	NA	75293793	75285208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353
ENSMUST00000187973.2	chrX	-	582	1	FSM	ENSMUSG00000095597.3	ENSMUST00000187973.2	582	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3871	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAGAAAATGACTGAATAA	NA	False	NA	NA	False	NA	NA	NA	151693116	151692534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_151692500_151693100
ENSMUST00000187994.7	chr15	-	955	4	FSM	ENSMUSG00000075602.11	ENSMUST00000187994.7	955	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	7.54247233265651	682	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAGTTCTCCATTTTTC	9508	False	NA	-4	True	AATAAA	-15	NA	74869880	74866726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_74867329_74868300_74868418_74869383_74869467_74869727
ENSMUST00000188025.7	chr15	-	1781	8	FSM	ENSMUSG00000060036.15	ENSMUST00000188025.7	1781	8	0	0	0	0	multi-exon	FALSE	canonical	3	23824	junction_4	2825.56158044697	6063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGGTTTTCCCACATTTC	4341	False	NA	-4	True	AATAAA	-14	NA	79966784	79961994	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964754_79965096_79965233_79965815_79965985_79966590
ENSMUST00000188111.7	chr7	+	2131	7	FSM	ENSMUSG00000045411.17	ENSMUST00000188111.7	2131	7	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	296.487211641019	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGGTGTGCTGTTTGATTC	NA	False	NA	22	True	ATTAAA	-22	NA	43896158	43901741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_43896233_43896661_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
ENSMUST00000188112.2	chr1	-	716	1	FSM	ENSMUSG00000041859.11	ENSMUST00000188112.2	716	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	187	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATGCTTTGTGCTTTAA	NA	False	NA	-12	True	AGTAAA	-24	NA	20873945	20873229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_20873200_20873900
ENSMUST00000188124.7	chr7	+	2048	10	FSM	ENSMUSG00000053877.13	ENSMUST00000188124.7	2048	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_9	13.723009424114	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTCAGTTATTGAGTATT	NA	False	NA	NA	False	AATAAA	-19	NA	127111154	127128494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802_127125078_127127567_127127662_127128309
ENSMUST00000188163.2	chr1	-	465	2	FSM	ENSMUSG00000102014.2	ENSMUST00000188163.2	465	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTTGATGAATTTAGCATA	NA	False	NA	NA	False	AATAAA	-14	NA	127701791	127681352	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_127681691_127701664
ENSMUST00000188179.7	chr1	+	1567	7	FSM	ENSMUSG00000053286.12	ENSMUST00000188179.7	1567	7	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_2	23.1732604525129	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	151304292	151319459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997
ENSMUST00000188205.2	chr1	-	725	4	FSM	ENSMUSG00000042305.13	ENSMUST00000188205.2	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_1	71.4749373323731	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTGGACTTGTTGATAT	NA	False	NA	NA	False	NA	NA	NA	134289691	134283179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_134283455_134288494_134288663_134289271_134289362_134289499
ENSMUST00000188260.7	chr3	-	739	3	FSM	ENSMUSG00000054426.12	ENSMUST00000188260.7	739	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	22	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTTGGCTATGGTG	944	False	NA	-5	True	NA	NA	NA	115681743	115675229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_115675488_115679862_115680025_115681424
ENSMUST00000188290.7	chr1	+	1855	10	FSM	ENSMUSG00000026203.17	ENSMUST00000188290.7	1855	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_9	6.24400947476761	271	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGGTGGCCTGTGTTCC	2259	False	NA	4	True	AATAAA	-14	NA	75213130	75222334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_75213234_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221437
ENSMUST00000188335.7	chr19	-	549	5	FSM	ENSMUSG00000054523.14	ENSMUST00000188335.7	549	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.82915619758885	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGATGCCAGTCCTGCTT	9164	False	NA	NA	False	AGTAAA	-18	NA	11257018	11251524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_11251663_11253973_11254127_11255049_11255107_11256613_11256743_11256946
ENSMUST00000188371.7	chr1	+	2268	10	FSM	ENSMUSG00000025925.15	ENSMUST00000188371.7	2268	10	0	0	0	0	multi-exon	FALSE	canonical	3	905	junction_7	69.1671798285292	4908	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAAAGCTGGCATCTTGA	NA	False	NA	NA	False	AATAAA	-24	NA	15875869	15914276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
ENSMUST00000188398.7	chr9	+	727	3	FSM	ENSMUSG00000035048.14	ENSMUST00000188398.7	727	3	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	699	2021	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTTTTCGTTTTGTTTT	NA	False	NA	25	True	AATAAA	-25	NA	102503522	102511449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_102503887_102506961_102507088_102511212
ENSMUST00000188414.4	chr6	-	3121	18	FSM	ENSMUSG00000015112.16	ENSMUST00000188414.4	3121	18	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_9	125.074538329783	1007	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGATTGCTTGCTCTTGTG	NA	False	NA	-4	True	AATAAA	-15	NA	6217173	6041218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
ENSMUST00000188445.7	chr9	+	2711	21	FSM	ENSMUSG00000038379.16	ENSMUST00000188445.7	2711	21	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_10	27.9819584732735	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGTCTCGACAACATT	NA	False	NA	0	True	AATAAA	-15	NA	83716741	83751546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235
ENSMUST00000188503.2	chr15	+	1211	3	FSM	ENSMUSG00000022587.15	ENSMUST00000188503.2	1211	3	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_1	177	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8402	False	NA	27	True	AATAAA	-15	NA	74827516	74831180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_74827567_74829628_74829727_74830117
ENSMUST00000188524.2	chr1	+	681	5	FSM	ENSMUSG00000025967.17	ENSMUST00000188524.2	681	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	1438.5358876302	2186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	30	True	AATAAA	-15	NA	63216288	63218815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_63216451_63217597_63217725_63217990_63218058_63218406_63218533_63218616
ENSMUST00000188577.2	chr9	-	1128	4	FSM	ENSMUSG00000042360.13	ENSMUST00000188577.2	1128	4	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_3	6.12825877028341	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCAGTGTCAGTCTCAG	NA	False	NA	NA	False	NA	NA	NA	3199799	3190270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_3190806_3192311_3192413_3192819_3193049_3199536
ENSMUST00000188630.7	chr1	+	1615	10	FSM	ENSMUSG00000051223.15	ENSMUST00000188630.7	1615	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	566.862340943767	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAAGGGCAATGATTT	891	False	NA	-2	True	ATTAAA	-18	NA	58432290	58444646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
ENSMUST00000188632.2	chrX	+	1177	4	FSM	ENSMUSG00000087193.8	ENSMUST00000188632.2	1177	4	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	23.6971634495683	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTGGGCCACTGGAT	NA	False	NA	26	True	TATAAA	-16	NA	7917829	7939195	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_7917897_7926454_7926526_7936874_7937304_7938585
ENSMUST00000188641.7	chr1	-	2014	4	FSM	ENSMUSG00000079658.10	ENSMUST00000188641.7	2014	4	0	0	0	0	multi-exon	FALSE	canonical	3	1161	junction_3	673.864641864785	8483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGCACTTGGTCTTTA	NA	False	NA	0	True	AATAAA	-23	NA	16727108	16711948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727045
ENSMUST00000188650.2	chr9	+	1508	8	FSM	ENSMUSG00000023277.14	ENSMUST00000188650.2	1508	8	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_7	32.5701754144894	947	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTGAGCCTGGGTGCCT	NA	False	NA	17	True	AATAAA	-14	NA	106083996	106092586	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106084166_106088917_106089097_106089454_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
ENSMUST00000188852.2	chr17	-	845	4	FSM	ENSMUSG00000099474.2	ENSMUST00000188852.2	845	4	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_3	117.235754879739	3148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTTTCCTCTGAGATG	NA	False	NA	-1	True	AATAAA	-25	NA	30845879	30841414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_30841669_30843173_30843588_30843854_30843908_30845755
ENSMUST00000188914.7	chr2	-	1494	3	FSM	ENSMUSG00000095362.8	ENSMUST00000188914.7	1494	3	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	32	1125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTAAAGCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	177476439	177473583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_177474890_177476043_177476105_177476312
ENSMUST00000189013.8	chr16	-	982	6	FSM	ENSMUSG00000023791.19	ENSMUST00000189013.8	982	6	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_5	129.408500493592	2767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGTTAGTTTGTCTTCA	NA	False	NA	-2	True	AATAAA	-28	NA	31918545	31903235	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918293
ENSMUST00000189068.7	chr15	-	878	4	FSM	ENSMUSG00000075602.11	ENSMUST00000189068.7	878	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	38.2738669184195	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGTTCTCCATTTTTCT	9632	False	NA	-3	True	AATAAA	-16	NA	74869756	74866725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_74867329_74868300_74868418_74869383_74869482_74869696
ENSMUST00000189176.2	chr1	+	885	2	FSM	ENSMUSG00000026248.10	ENSMUST00000189176.2	885	2	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTGGAGGTTTACGTTA	NA	False	NA	NA	False	AATAAA	-13	NA	79753832	79756263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_79754029_79755574
ENSMUST00000189222.2	chr10	-	711	3	FSM	ENSMUSG00000019813.17	ENSMUST00000189222.2	711	3	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_2	46.5	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTGTGAGGCCTTGGTC	385	False	NA	NA	False	NA	NA	NA	41685608	41618697	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_41619218_41621766_41621918_41685568
ENSMUST00000189241.2	chr9	-	666	4	FSM	ENSMUSG00000062270.15	ENSMUST00000189241.2	666	4	0	0	0	0	multi-exon	FALSE	canonical	3	6344	junction_1	302.711083378194	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGTGTTGGAAATTCTAG	NA	False	NA	NA	False	NA	NA	NA	89996663	89983963	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_89984440_89989287_89989356_89992178_89992226_89996588
ENSMUST00000189268.7	chr11	-	2347	13	FSM	ENSMUSG00000000384.16	ENSMUST00000189268.7	2347	13	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	134.990406037697	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGGGCCACTGGCTTTTC	NA	False	NA	-6	True	AATAAA	-18	NA	6576067	6565598	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_6565767_6566557_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
ENSMUST00000189386.2	chr6	-	775	2	FSM	ENSMUSG00000101655.2	ENSMUST00000189386.2	775	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTGAAATTTTTTTTTA	6996	False	NA	NA	False	AATAAA	-19	NA	86465209	86460357	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_86460700_86464776
ENSMUST00000189445.2	chr13	-	399	2	FSM	ENSMUSG00000100760.2	ENSMUST00000189445.2	399	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCTGAGTCTGTTTACTG	NA	False	NA	NA	False	NA	NA	NA	37608255	37605808	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_37606132_37608179
ENSMUST00000189529.7	chr1	-	1801	17	FSM	ENSMUSG00000026245.17	ENSMUST00000189529.7	1801	17	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_15	338.950378927359	1767	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTGCGTAGCTGCATTA	NA	False	NA	-2	True	AATAAA	-19	NA	78465499	78401721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456651_78458944_78459001_78465421
ENSMUST00000189636.8	chr2	-	499	4	FSM	ENSMUSG00000076437.12	ENSMUST00000189636.8	499	4	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_1	1096.46776311735	834	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGATGGTTCAGTTGTGAG	390	False	NA	-100	True	NA	NA	NA	84501020	84499650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_84499742_84500392_84500461_84500588_84500735_84500826
ENSMUST00000189644.7	chr12	+	1294	7	FSM	ENSMUSG00000021103.13	ENSMUST00000189644.7	1294	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	149.362813310409	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTTTGTGGGATTTTTT	NA	False	NA	6	True	AATAAA	-16	NA	73170490	73319625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_73170701_73214773_73214927_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
ENSMUST00000189654.2	chr15	+	818	3	FSM	ENSMUSG00000022583.13	ENSMUST00000189654.2	818	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	3	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCAAGATCTCAGTTTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	75140550	75144084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_75140649_75141628_75141746_75143481
ENSMUST00000189690.7	chr1	-	2060	12	FSM	ENSMUSG00000026301.17	ENSMUST00000189690.7	2060	12	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_8	12	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCAGTAATTTGGTCAC	NA	False	NA	-4	True	AATAAA	-17	NA	90017866	89969856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_89970465_89973313_89973553_89975510_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
ENSMUST00000189728.7	chr1	-	713	5	FSM	ENSMUSG00000026279.15	ENSMUST00000189728.7	713	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	175.089262948931	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTAGACTGTACATTTT	NA	False	NA	2	True	AATAAA	-41	NA	93659648	93633108	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93653039_93659578
ENSMUST00000189770.7	chr10	-	2232	11	FSM	ENSMUSG00000019813.17	ENSMUST00000189770.7	2232	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_10	72.0486641097529	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	129	False	NA	4	True	AATAAA	-25	NA	41685864	41594836	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568_41685660_41685783
ENSMUST00000189808.7	chr19	-	708	7	FSM	ENSMUSG00000058216.14	ENSMUST00000189808.7	708	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	28.8236978119664	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTGCAGGGCTTGTCCT	9073	False	NA	NA	False	NA	NA	NA	4109446	4107476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734_4108842_4109258_4109295_4109423
ENSMUST00000189925.7	chr1	+	1303	8	FSM	ENSMUSG00000025949.17	ENSMUST00000189925.7	1303	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	38.9814189121967	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAAAAATCCTTCAA	NA	False	NA	NA	False	NA	NA	NA	65225854	65245333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_65225938_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65245033
ENSMUST00000189935.2	chr9	-	1316	1	FSM	ENSMUSG00000057367.13	ENSMUST00000189935.2	1316	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAAAGTTCA	-26	True	NA	NA	False	NA	NA	NA	7837064	7835748	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_7835700_7837100
ENSMUST00000189936.7	chr1	+	1696	11	FSM	ENSMUSG00000018189.13	ENSMUST00000189936.7	1696	11	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_8	216.947090323885	6526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTGGATTATTTGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	143653009	143683043	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675658_143675773_143677872_143677972_143682421
ENSMUST00000189986.7	chr14	+	4298	40	FSM	ENSMUSG00000021843.18	ENSMUST00000189986.7	4298	40	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	225.664736516441	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTCTGATTGTCGTTGA	NA	False	NA	24	True	AATAAA	-24	NA	47886850	47974021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_47886897_47889718_47889844_47901212_47901773_47904757_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
ENSMUST00000190022.7	chr10	-	1949	10	FSM	ENSMUSG00000019813.17	ENSMUST00000190022.7	1949	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	66.7229392134665	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGCCTGTGGAAATATT	390	False	NA	-1	True	AATAAA	-20	NA	41685603	41594841	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616910_41621766_41621918_41685568
ENSMUST00000190033.4	chr9	-	1408	4	FSM	ENSMUSG00000097195.11	ENSMUST00000190033.4	1408	4	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	320.936476926856	1578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88405016	88403104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404435_88404536
ENSMUST00000190252.7	chr14	+	4436	41	FSM	ENSMUSG00000021843.18	ENSMUST00000190252.7	4436	41	0	0	0	0	multi-exon	TRUE	canonical	3	128	junction_40	180.470106596633	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACTCACTCTGATTG	NA	False	NA	17	True	AATAAA	-17	NA	47886767	47974014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971722_47973556
ENSMUST00000190279.7	chr9	+	589	3	FSM	ENSMUSG00000035048.14	ENSMUST00000190279.7	589	3	0	0	0	0	multi-exon	FALSE	canonical	3	1105	junction_1	209.5	17813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTTGCTTCTGTCAAAGT	NA	False	NA	NA	False	ATTAAA	-18	NA	102503494	102511624	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_102503546_102506961_102507088_102511212
ENSMUST00000190341.7	chr9	-	3331	8	FSM	ENSMUSG00000057367.13	ENSMUST00000190341.7	3331	8	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_2	22.0352222681815	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGATGTGATTCATGAGA	-20	True	NA	-1	True	AATAAA	-21	NA	7837058	7818227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_7818945_7819021_7819064_7819307_7819563_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836990
ENSMUST00000190415.2	chr17	+	1964	3	FSM	ENSMUSG00000060149.8	ENSMUST00000190415.2	1964	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	11	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCCCAAGTGGCCTACTC	NA	False	NA	24	True	NA	NA	NA	17171800	17194419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_17171971_17191432_17191494_17192686
ENSMUST00000190472.2	chr3	+	724	3	FSM	ENSMUSG00000036873.14	ENSMUST00000190472.2	724	3	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_2	94.5	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAGATGATCATGGAAATAA	NA	False	NA	-10	True	NA	NA	NA	145644039	145649997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_145644084_145644652_145644852_145649516
ENSMUST00000190496.2	chr17	+	1395	3	FSM	ENSMUSG00000034595.18	ENSMUST00000190496.2	1395	3	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	4	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGCTGCCTTCCTTTGTT	NA	False	NA	13	True	AATAAA	-20	NA	36179294	36186486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_36179678_36184617_36184832_36185688
ENSMUST00000190602.2	chr3	-	1026	3	FSM	ENSMUSG00000099370.2	ENSMUST00000190602.2	1026	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	94	1124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563038	75554752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_75555246_75556106_75556298_75562696
ENSMUST00000190652.2	chr1	+	478	3	FSM	ENSMUSG00000026380.11	ENSMUST00000190652.2	478	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	993	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGTCTTTGTAATTTTA	NA	False	NA	NA	False	NA	NA	NA	118555674	118565496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_118555833_118559971_118560124_118565328
ENSMUST00000190715.7	chr9	+	1768	6	FSM	ENSMUSG00000056267.15	ENSMUST00000190715.7	1768	6	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	56.4361586219332	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTCTTGGTCATCAT	NA	False	NA	7	True	NA	NA	NA	99125513	99146981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681
ENSMUST00000190729.2	chr13	+	1184	3	FSM	ENSMUSG00000078941.10	ENSMUST00000190729.2	1184	3	0	0	0	0	multi-exon	FALSE	canonical	3	1279	junction_2	251.5	5544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTGGTACTTTGGCAG	NA	False	NA	NA	False	AATAAA	-19	NA	100787887	100792566	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_100787954_100790698_100790792_100791541
ENSMUST00000190776.2	chr16	+	930	2	FSM	ENSMUSG00000071632.11	ENSMUST00000190776.2	930	2	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	0	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGGTGGCCCACGCCTT	NA	False	NA	63	True	NA	NA	NA	18655404	18658550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18655624_18657839
ENSMUST00000190841.2	chr7	+	971	2	FSM	ENSMUSG00000099417.2	ENSMUST00000190841.2	971	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAAAAAAAAAAAAGGC	4392	False	NA	NA	False	AATAAA	-8	NA	28191974	28197138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28192135_28196327
ENSMUST00000190843.2	chr19	+	830	4	FSM	ENSMUSG00000071653.10	ENSMUST00000190843.2	830	4	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	1438.49141657347	951	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTGTGGGATGAAGTGCAG	NA	False	NA	27	True	AATAAA	-16	NA	8866302	8868105	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8866613_8867000_8867092_8867366_8867465_8867774
ENSMUST00000190903.2	chr7	+	426	2	FSM	ENSMUSG00000049643.16	ENSMUST00000190903.2	426	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGTGTGTTTGTT	433	False	NA	NA	False	AGTAAA	-21	NA	27252694	27253496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27252779_27253154
ENSMUST00000190930.2	chr2	+	567	1	FSM	ENSMUSG00000099632.2	ENSMUST00000190930.2	567	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACCAGTCTCTGGCTTTT	NA	False	NA	NA	False	ATTAAA	-24	NA	163261714	163262281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_163261700_163262300
ENSMUST00000191108.7	chr1	+	1500	8	FSM	ENSMUSG00000026201.13	ENSMUST00000191108.7	1500	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	77.7888297946198	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187513	75190886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189756_75189873_75190219_75190342_75190457
ENSMUST00000191189.7	chr9	-	1223	11	FSM	ENSMUSG00000062270.15	ENSMUST00000191189.7	1223	11	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	2089.62901970661	2333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTCTTCCTTTTTTCA	NA	False	NA	NA	False	AATAAA	-15	NA	89996797	89974207	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89984352_89984440_89989287_89989356_89992178_89992226_89996588
ENSMUST00000191237.7	chr1	-	1689	9	FSM	ENSMUSG00000042305.13	ENSMUST00000191237.7	1689	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	283.900923519104	582	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTTCATGGAAGAACGTT	NA	False	NA	67	True	NA	NA	NA	134289679	134275419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134280712_134280876_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
ENSMUST00000191296.2	chr1	-	666	1	FSM	ENSMUSG00000025917.10	ENSMUST00000191296.2	666	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAATCC	NA	False	NA	NA	False	TATAAA	-23	NA	10108170	10107504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_10107500_10108200
ENSMUST00000191316.2	chr15	-	1391	3	FSM	ENSMUSG00000054115.13	ENSMUST00000191316.2	1391	3	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_1	23	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTAAAAACCTTGCGTG	NA	False	NA	NA	False	NA	NA	NA	9140439	9127134	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_9128085_9139518_9139791_9140270
ENSMUST00000191353.2	chr9	-	600	8	FSM	ENSMUSG00000062270.15	ENSMUST00000191353.2	600	8	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_5	2709.89411646451	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGAGAGCCCGGGTAGA	NA	False	NA	NA	False	NA	NA	NA	89996712	89979460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89985707_89985822_89989287_89989356_89992178_89992226_89996588
ENSMUST00000191434.2	chr9	+	1242	10	FSM	ENSMUSG00000023345.18	ENSMUST00000191434.2	1242	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	133.805644938037	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTCTGGGATTGGGTGC	9876	False	NA	22	True	AATAAA	-34	NA	106158578	106227091	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106158656_106160053_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106226880
ENSMUST00000191436.7	chr15	+	1122	4	FSM	ENSMUSG00000022587.15	ENSMUST00000191436.7	1122	4	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_1	144.768781165001	2907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8387	False	NA	27	True	AATAAA	-15	NA	74827501	74831180	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_74827567_74829628_74829727_74830117_74830238_74830341
ENSMUST00000191439.2	chr15	+	815	1	FSM	ENSMUSG00000022587.15	ENSMUST00000191439.2	815	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAAAAC	8417	False	NA	NA	False	NA	NA	NA	74827531	74828346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_74827500_74828300
ENSMUST00000191450.7	chr4	-	1304	8	FSM	ENSMUSG00000041459.16	ENSMUST00000191450.7	1304	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	409.46231542732	1352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCAAGTCAAATGGATTCA	NA	False	NA	-11	True	AATAAA	-17	NA	148711215	148701181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_148701302_148702022_148702283_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
ENSMUST00000191485.7	chr3	+	3154	13	FSM	ENSMUSG00000042626.14	ENSMUST00000191485.7	3154	13	0	0	0	0	multi-exon	TRUE	canonical	3	256	junction_1	89.6222008705928	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCCTCTGGAAAGTCTGA	NA	False	NA	32	True	ATTAAA	-29	NA	89325857	89337334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89326017_89329484_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
ENSMUST00000191585.7	chr13	+	670	4	FSM	ENSMUSG00000097709.9	ENSMUST00000191585.7	670	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	5.24933858267454	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTCCCCTCTTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	3528245	3539283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_3528353_3529908_3530002_3535048_3535221_3538985
ENSMUST00000191598.3	chr17	+	645	3	FSM	ENSMUSG00000024038.18	ENSMUST00000191598.3	645	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	1845	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATGTCTGTGGCTTTGAG	NA	False	NA	NA	False	NA	NA	NA	31739158	31746219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_31739236_31740542_31740667_31745775
ENSMUST00000191689.6	chr1	+	2754	14	FSM	ENSMUSG00000026554.16	ENSMUST00000191689.6	2754	14	0	0	0	0	multi-exon	TRUE	canonical	3	418	junction_1	55.9704063816991	733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATTCTCTATGAATCCA	NA	False	NA	56	True	TTTAAA	-6	NA	171975684	172023074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
ENSMUST00000191691.2	chr3	+	590	2	FSM	ENSMUSG00000039221.11	ENSMUST00000191691.2	590	2	0	0	0	0	multi-exon	FALSE	canonical	3	7992	junction_1	0	1315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAACATGTATGGTTCAT	NA	False	NA	11	True	AATAAA	-16	NA	28860647	28861565	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_28861008_28861335
ENSMUST00000191783.6	chr3	+	1988	7	FSM	ENSMUSG00000027667.14	ENSMUST00000191783.6	1988	7	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	46.6455309280059	725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	3182	False	NA	22	True	AATAAA	-22	NA	32564683	32574892	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_32564882_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
ENSMUST00000191997.2	chr9	+	787	2	FSM	ENSMUSG00000063856.9	ENSMUST00000191997.2	787	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	21172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGATGGGCGCTGGTCCC	NA	False	NA	-75	True	NA	NA	NA	108216441	108217449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108216758_108216978
ENSMUST00000192076.3	chr1	+	2384	11	FSM	ENSMUSG00000072258.12	ENSMUST00000192076.3	2384	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_7	9.96042167782067	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAGTAGTATTTTATTC	NA	False	NA	16	True	AATAAA	-27	NA	183170324	183191020	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_183170499_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189583_183190053
ENSMUST00000192088.2	chr1	-	319	1	FSM	ENSMUSG00000103013.2	ENSMUST00000192088.2	319	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGGTCAGTGAGGGAACA	NA	False	NA	NA	False	NA	NA	NA	74327019	74326700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_74326700_74327000
ENSMUST00000192150.6	chr1	+	1756	6	FSM	ENSMUSG00000026708.17	ENSMUST00000192150.6	1756	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	51.3754805330325	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGTTTCCAATTGAAG	NA	False	NA	6	True	AATAAA	-12	NA	160898519	160913894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_160898927_160902326_160902501_160905898_160906051_160907437_160907581_160910477_160911021_160913557
ENSMUST00000192176.2	chr19	+	453	1	FSM	ENSMUSG00000102349.2	ENSMUST00000192176.2	453	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4537	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCTCCATTATACAGTAC	2225	False	NA	NA	False	NA	NA	NA	5851968	5852421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5852000_5852400
ENSMUST00000192225.2	chr1	+	513	3	FSM	ENSMUSG00000026575.16	ENSMUST00000192225.2	513	3	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	21	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGGAACACAGAGGAGAGA	NA	False	NA	NA	False	NA	NA	NA	164135316	164140736	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_164135324_164135628_164135820_164140421
ENSMUST00000192248.2	chr1	-	1271	11	FSM	ENSMUSG00000026683.15	ENSMUST00000192248.2	1271	11	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_10	33.1324614238061	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAAAGTGTGGGTTTTT	NA	False	NA	-3	True	AATACA	-15	NA	169358980	169337685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169356304_169356381_169358890
ENSMUST00000192307.6	chr9	+	1191	3	FSM	ENSMUSG00000032599.13	ENSMUST00000192307.6	1191	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	47	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTGTCTTGTAGTTC	NA	False	NA	NA	False	AATAAA	-16	NA	108660994	108675188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108661070_108673262_108673596_108674405
ENSMUST00000192538.2	chr3	-	1392	1	FSM	ENSMUSG00000042165.9	ENSMUST00000192538.2	1392	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3827	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTGTTCCAGCCACTT	NA	False	NA	NA	False	NA	NA	NA	92336730	92335338	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_92335300_92336700
ENSMUST00000192561.6	chr1	+	3160	15	FSM	ENSMUSG00000058729.14	ENSMUST00000192561.6	3160	15	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	15.1320716307033	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTCTGAGAATCTTACT	NA	False	NA	9	True	AATAAA	-19	NA	180468714	180518252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180468963_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
ENSMUST00000192639.6	chr1	-	1294	4	FSM	ENSMUSG00000026701.16	ENSMUST00000192639.6	1294	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	831.771736849854	892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAACCGTTGTCATGTTT	NA	False	NA	-11	True	AATAAA	-10	NA	161078756	161068584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161078591
ENSMUST00000192698.3	chr1	+	1811	13	FSM	ENSMUSG00000033793.13	ENSMUST00000192698.3	1811	13	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	140.296783640966	1272	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATATAATTAAAGGATTCT	NA	False	NA	-12	True	NA	NA	NA	5153376	5232642	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
ENSMUST00000192704.6	chr1	+	2859	14	FSM	ENSMUSG00000026554.16	ENSMUST00000192704.6	2859	14	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_1	115.931269170995	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGTATCAAGTTAAAATTA	NA	False	NA	15	True	ATTAAA	-17	NA	171975708	172023033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_171975906_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
ENSMUST00000192710.2	chr1	+	687	6	FSM	ENSMUSG00000026575.16	ENSMUST00000192710.2	687	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	52.9550752997293	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACAAGTGACTTTGGTT	7384	False	NA	NA	False	AATAAA	-12	NA	164200837	164264861	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_164200904_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
ENSMUST00000192725.6	chr1	+	2878	14	FSM	ENSMUSG00000058729.14	ENSMUST00000192725.6	2878	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	33.6784305808708	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAATCTTACTAACATAG	NA	False	NA	16	True	AATAAA	-26	NA	180468898	180518259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180468963_180475865_180475899_180478306_180478402_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
ENSMUST00000193053.6	chr12	+	1351	3	FSM	ENSMUSG00000037957.15	ENSMUST00000193053.6	1351	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	64	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATTTGTTTATCCTTTTT	5298	False	NA	NA	False	ATTAAA	-15	NA	110704377	110770672	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_110704712_110745729_110745913_110769838
ENSMUST00000193073.2	chr1	+	944	3	FSM	ENSMUSG00000026078.11	ENSMUST00000193073.2	944	3	0	0	0	0	multi-exon	FALSE	canonical	3	894	junction_1	18	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACAGTGCAAAAAATGAGA	NA	False	NA	NA	False	AATAAA	-26	NA	39034240	39035727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_39034470_39034815_39035025_39035221
ENSMUST00000193168.2	chr3	+	552	4	FSM	ENSMUSG00000039221.11	ENSMUST00000193168.2	552	4	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_2	3246.42750659175	11981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGGTTCATCAGTGT	NA	False	NA	17	True	AATAAA	-22	NA	28859658	28861571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_28859693_28860648_28860742_28860818_28861008_28861335
ENSMUST00000193190.6	chr9	-	2160	15	FSM	ENSMUSG00000064145.13	ENSMUST00000193190.6	2160	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	244.802388026901	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTCACCCTTTAGCTA	NA	False	NA	-24	True	AATAAA	-11	NA	108526584	108481884	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521565_108522131_108522194_108526427
ENSMUST00000193210.6	chr1	+	865	4	FSM	ENSMUSG00000061518.12	ENSMUST00000193210.6	865	4	0	0	0	0	multi-exon	FALSE	canonical	3	7132	junction_3	70.6588045940962	90233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGCTAAAAATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	36730564	36732762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_36730771_36731291_36731366_36731531_36731632_36732277
ENSMUST00000193235.2	chr1	+	362	4	FSM	ENSMUSG00000061518.12	ENSMUST00000193235.2	362	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3383.70989694251	817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTGGCTAGTCTTATGT	NA	False	NA	22	True	AATAAA	-27	NA	36730724	36732466	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_36730771_36731338_36731366_36731531_36731632_36732277
ENSMUST00000193242.2	chr9	-	852	3	FSM	ENSMUSG00000070283.5	ENSMUST00000193242.2	852	3	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_1	48.5	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTCCTCTTACATATTTT	8667	False	NA	-18	True	NA	NA	NA	108444109	108443075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_108443275_108443357_108443951_108444049
ENSMUST00000193279.2	chr3	-	315	4	FSM	ENSMUSG00000037152.12	ENSMUST00000193279.2	315	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2986.95545478818	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCCTCAGTGACGGATGT	NA	False	NA	-136	True	NA	NA	NA	51316385	51313002	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_51313036_51314756_51314834_51315565_51315670_51316284
ENSMUST00000193338.6	chr3	-	795	3	FSM	ENSMUSG00000028066.16	ENSMUST00000193338.6	795	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.5	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCTGTGAGGAGGTTT	NA	False	NA	-6	True	AATAAA	-16	NA	88317633	88301449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_88301878_88303211_88303408_88317462
ENSMUST00000193502.2	chr1	-	1513	1	FSM	ENSMUSG00000001143.14	ENSMUST00000193502.2	1513	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAAGAAAAACAT	NA	False	NA	NA	False	NA	NA	NA	36484338	36482825	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_36482800_36484300
ENSMUST00000193628.6	chr9	+	1736	9	FSM	ENSMUSG00000010057.9	ENSMUST00000193628.6	1736	9	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_4	11.1235954169504	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTGTGGAATATTGAGTA	NA	False	NA	2	True	AATAAA	-13	NA	107419443	107422894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107422040_107422112_107422587_107422689
ENSMUST00000193673.6	chr1	+	662	5	FSM	ENSMUSG00000026087.12	ENSMUST00000193673.6	662	5	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	367.71796257458	2868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTTCGTTCAGTTCTCTC	NA	False	NA	46	True	NA	NA	NA	37929612	37937445	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_37929666_37933019_37933097_37934410_37934492_37936768_37936916_37937141
ENSMUST00000193675.2	chr2	+	1777	8	FSM	ENSMUSG00000026728.10	ENSMUST00000193675.2	1777	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	98.0899212613673	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGGTGTGTTATTTT	50	False	NA	13	True	AATAAA	-13	NA	13579091	13587636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13587283
ENSMUST00000193683.6	chr1	+	1740	14	FSM	ENSMUSG00000026575.16	ENSMUST00000193683.6	1740	14	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	20.0017750691572	646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTTGGTTTTATTTCA	NA	False	NA	NA	False	AATAAA	-20	NA	164135240	164264869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_164135324_164135628_164135820_164140421_164140508_164155861_164155970_164160180_164160348_164168297_164168409_164170782_164170834_164172787_164172996_164175342_164175449_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
ENSMUST00000193725.2	chr1	-	654	3	FSM	ENSMUSG00000103708.2	ENSMUST00000193725.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	3	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGTGCCTCTGGCCTCTC	NA	False	NA	NA	False	AATAAA	-39	NA	36050125	36042065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_36042488_36042894_36043073_36050071
ENSMUST00000193792.6	chr2	-	2110	11	FSM	ENSMUSG00000025816.16	ENSMUST00000193792.6	2110	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	89.7356673792534	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAACTGTTGCAGTTGT	NA	False	NA	-59	True	AATAAA	-9	NA	5900145	5875839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_5876833_5878553_5878631_5879037_5879230_5881651_5881813_5882665_5882820_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
ENSMUST00000193907.6	chr1	+	531	4	FSM	ENSMUSG00000062169.14	ENSMUST00000193907.6	531	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	993.032504782978	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCACAATTGAGGAGCCAGA	NA	False	NA	NA	False	NA	NA	NA	180972257	180993813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_180972467_180983423_180983537_180989639_180989781_180993745
ENSMUST00000193947.2	chr3	-	2013	10	FSM	ENSMUSG00000040209.13	ENSMUST00000193947.2	2013	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	145.564885197183	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTTTCTATGTCTGTTT	NA	False	NA	-15	True	NA	NA	NA	9630359	9503351	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_9503959_9504844_9504943_9508883_9508967_9509218_9509403_9511019_9511125_9512334_9512603_9517323_9517425_9535951_9536179_9539558_9539663_9630123
ENSMUST00000194092.2	chr3	+	553	3	FSM	ENSMUSG00000039221.11	ENSMUST00000194092.2	553	3	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_1	3771	4476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACATGTATGGTTCA	NA	False	NA	10	True	AATAAA	-15	NA	28860606	28861564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_28860742_28860818_28861008_28861335
ENSMUST00000194111.6	chr1	-	1501	9	FSM	ENSMUSG00000016481.16	ENSMUST00000194111.6	1501	9	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_8	99.5100497437319	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTGGTATCAGGAGTGAG	NA	False	NA	53	True	NA	NA	NA	194813631	194780966	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_194781150_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813367
ENSMUST00000194208.6	chr3	+	1527	6	FSM	ENSMUSG00000041750.14	ENSMUST00000194208.6	1527	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	24.5568727650733	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTTATTGTTTTATTA	NA	False	NA	2	True	AATAAA	-14	NA	86893857	86897087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_86894013_86894294_86894568_86894849_86895129_86895584_86895863_86896457_86896555_86896642
ENSMUST00000194226.2	chr3	+	1457	1	FSM	ENSMUSG00000027671.15	ENSMUST00000194226.2	1457	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	214	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACCAA	NA	False	NA	NA	False	NA	NA	NA	32762698	32764155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_32762700_32764200
ENSMUST00000194244.6	chr17	-	862	5	FSM	ENSMUSG00000073406.11	ENSMUST00000194244.6	862	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_3	129.95191418367	1430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394858_36395051
ENSMUST00000194248.2	chr4	+	936	8	FSM	ENSMUSG00000006395.17	ENSMUST00000194248.2	936	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	6.43333157097011	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATATGTGTATATTACAG	NA	False	NA	NA	False	ATTAAA	-16	NA	118217186	118219941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_118217429_118217502_118217587_118218812_118218928_118219070_118219150_118219237_118219288_118219387_118219458_118219559_118219695_118219780
ENSMUST00000194533.6	chr2	-	1843	10	FSM	ENSMUSG00000026767.13	ENSMUST00000194533.6	1843	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	51.3963057710725	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	12424259	12352073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12423969
ENSMUST00000194542.6	chr9	-	3151	6	FSM	ENSMUSG00000003308.16	ENSMUST00000194542.6	3151	6	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	41.5143348736313	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGGCTCTGAATTAACCT	NA	False	NA	1	True	AATAAA	-18	NA	21150628	21141025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150371
ENSMUST00000194565.2	chr2	-	1303	6	FSM	ENSMUSG00000025816.16	ENSMUST00000194565.2	1303	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	114.035783857524	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5900145	5886618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900070
ENSMUST00000194587.2	chr3	+	1522	1	FSM	ENSMUSG00000037730.14	ENSMUST00000194587.2	1522	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	92	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGGCT	8787	False	NA	NA	False	ATTAAA	-33	NA	30656787	30658309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_30656800_30658300
ENSMUST00000194632.2	chr1	-	2433	13	FSM	ENSMUSG00000033684.15	ENSMUST00000194632.2	2433	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	5.99247212944893	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGAACGTGTTTGACTTG	NA	False	NA	-5	True	AATAAA	-19	NA	155688590	155653907	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_155654598_155655463_155655685_155657020_155657201_155658270_155658419_155659148_155659272_155662539_155662670_155665043_155665179_155666726_155666873_155667939_155668031_155670291_155670395_155671096_155671143_155679442_155679544_155688271
ENSMUST00000194649.2	chr3	+	525	4	FSM	ENSMUSG00000039221.11	ENSMUST00000194649.2	525	4	0	0	0	0	multi-exon	FALSE	canonical	3	3779	junction_1	1855.270390596	84244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGGTTCATCAGTGTGT	NA	False	NA	19	True	AATAAA	-24	NA	28859617	28861573	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_28859693_28860651_28860742_28860885_28861008_28861335
ENSMUST00000194692.2	chr1	-	1348	1	FSM	ENSMUSG00000058407.13	ENSMUST00000194692.2	1348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	61	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	38036343	38034995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_38035000_38036300
ENSMUST00000194746.6	chr1	+	703	4	FSM	ENSMUSG00000073702.12	ENSMUST00000194746.6	703	4	0	0	0	0	multi-exon	FALSE	canonical	3	7651	junction_1	2213.20918326508	19670	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	26	True	AATAAA	-15	NA	39406958	39410447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_39407016_39407229_39407337_39409094_39409221_39410034
ENSMUST00000194876.6	chr3	+	1059	9	FSM	ENSMUSG00000028199.19	ENSMUST00000194876.6	1059	9	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	25.4447931805311	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTATCCATTGGAGA	NA	False	NA	NA	False	AATAGA	-28	NA	154302780	154327804	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_154302922_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
ENSMUST00000194932.6	chr9	+	2054	11	FSM	ENSMUSG00000010048.11	ENSMUST00000194932.6	2054	11	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_10	36.8511872264653	1022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCCTTTATCCTGAGTC	NA	False	NA	21	True	ATTAAA	-33	NA	107464924	107470237	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
ENSMUST00000195014.6	chr3	+	1059	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	0	0	0	0	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	39203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	3557	False	NA	15	True	AATAAA	-17	NA	88486914	88495726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
ENSMUST00000195123.6	chr1	+	356	4	FSM	ENSMUSG00000073702.12	ENSMUST00000195123.6	356	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	5182.47514867816	1768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	26	True	AATAAA	-15	NA	39407229	39410447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_39407337_39409094_39409221_39410089_39410148_39410382
ENSMUST00000195151.6	chr1	+	344	3	FSM	ENSMUSG00000061518.12	ENSMUST00000195151.6	344	3	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	3647.5	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730690	36732467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_36730771_36731291_36731366_36732277
ENSMUST00000195235.6	chr9	-	1162	4	FSM	ENSMUSG00000037190.13	ENSMUST00000195235.6	1162	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_2	4.08248290463863	794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCGGGAGGAGCAGCGC	NA	False	NA	-20	True	AATAAA	-19	NA	107419392	107416773	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_107417585_107418201_107418240_107418695_107418850_107419233
ENSMUST00000195286.5	chr1	+	656	3	FSM	ENSMUSG00000115958.2	ENSMUST00000195286.5	656	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	17.5	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	5608	False	NA	4	True	AATAAA	-16	NA	133251703	133257460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_133251787_133254872_133255079_133257093
ENSMUST00000195373.2	chr1	+	587	4	FSM	ENSMUSG00000026087.12	ENSMUST00000195373.2	587	4	0	0	0	0	multi-exon	FALSE	canonical	3	1006	junction_1	22.6421435969889	2339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGCTGATGGAGTCCTG	NA	False	NA	20	True	ATTAAA	-20	NA	37933015	37937419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_37933097_37934410_37934492_37936768_37936916_37937141
ENSMUST00000195450.2	chr1	+	462	3	FSM	ENSMUSG00000050122.20	ENSMUST00000195450.2	462	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	16	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCAGATTTCTCCCTCA	NA	False	NA	5	True	AATAAA	-22	NA	37174588	37180417	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_37174647_37176810_37176969_37180171
ENSMUST00000195561.6	chr3	-	3486	16	FSM	ENSMUSG00000028078.15	ENSMUST00000195561.6	3486	16	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_11	36.9688156874593	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAATCCATGGGGTGGGT	NA	False	NA	-9	True	AATAAA	-14	NA	86827642	86693465	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_86694720_86699301_86699419_86700525_86700607_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
ENSMUST00000195650.6	chr1	-	4230	16	FSM	ENSMUSG00000037474.14	ENSMUST00000195650.6	4230	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	170.83122275119	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTGTGTTACTGGGGGT	NA	False	NA	3	True	NA	NA	NA	191307633	191269467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_191271454_191272815_191273649_191278602_191278736_191280407_191280498_191285099_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191297430_191297463_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
ENSMUST00000195728.2	chr3	+	1908	1	FSM	ENSMUSG00000039221.11	ENSMUST00000195728.2	1908	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	299	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACATGTATGGTTCA	NA	False	NA	10	True	AATAAA	-15	NA	28859656	28861564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_28859700_28861600
ENSMUST00000195752.6	chr9	+	2062	5	FSM	ENSMUSG00000010047.13	ENSMUST00000195752.6	2062	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	94.7532980956336	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTGTCTTTTTCTGCTTC	NA	False	NA	18	True	ATTAAA	-20	NA	107445143	107449978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_107445176_107446181_107446433_107447302_107448270_107448690_107448781_107449256
ENSMUST00000195827.6	chr3	+	473	4	FSM	ENSMUSG00000039221.11	ENSMUST00000195827.6	473	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3627.89418564299	5614	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACATGTATGGTTCA	NA	False	NA	10	True	AATAAA	-15	NA	28859811	28861564	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_28859844_28860651_28860742_28860885_28861008_28861335
ENSMUST00000195833.6	chr17	-	829	5	FSM	ENSMUSG00000073406.11	ENSMUST00000195833.6	829	5	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	176.893329438959	1306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394825_36395051
ENSMUST00000195838.6	chr17	-	1105	6	FSM	ENSMUSG00000073406.11	ENSMUST00000195838.6	1105	6	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	180.752427369593	1283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587_36394825_36395051
ENSMUST00000195855.6	chr3	-	1587	4	FSM	ENSMUSG00000040374.14	ENSMUST00000195855.6	1587	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	22.2161102706022	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATTGTGCATTTATTTTT	NA	False	NA	0	True	AATAAA	-20	NA	5641205	5625559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_5626821_5628224_5628333_5628679_5628790_5641097
ENSMUST00000195913.2	chr3	-	484	2	FSM	ENSMUSG00000040943.13	ENSMUST00000195913.2	484	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTAGATTTCTTTCTGT	NA	False	NA	NA	False	AATAAA	-38	NA	133250047	133244522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_133244920_133249960
ENSMUST00000195970.5	chr14	-	2057	10	FSM	ENSMUSG00000000958.11	ENSMUST00000195970.5	2057	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	52.275150483042	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGTCTGAGTGGCTTTAT	6547	False	NA	-7	True	AATAAA	-14	NA	54647673	54606901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54647534
ENSMUST00000195998.5	chr3	-	458	5	FSM	ENSMUSG00000090733.7	ENSMUST00000195998.5	458	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	9237.94281753248	7495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	-2	True	AATAAA	-19	NA	90120954	90119973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120687_90120801_90120916
ENSMUST00000196069.5	chr5	+	1150	4	FSM	ENSMUSG00000007812.17	ENSMUST00000196069.5	1150	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	192.902969276151	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTGTACTTTTTGTAG	1305	False	NA	NA	False	AATACA	-16	NA	145168538	145174658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145173859
ENSMUST00000196077.5	chr3	-	1981	16	FSM	ENSMUSG00000028107.15	ENSMUST00000196077.5	1981	16	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_3	215.408696822265	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662147	95647287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95647632_95648633_95648749_95649385_95649536_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95655353_95655453_95655798_95655867_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
ENSMUST00000196111.5	chr5	+	1394	10	FSM	ENSMUSG00000029622.17	ENSMUST00000196111.5	1394	10	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_6	583.199688394301	784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACAAACAACC	8129	False	NA	-84	True	NA	NA	NA	145051121	145064883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062688_145062777_145063536_145063743_145064445_145064537_145064630
ENSMUST00000196137.2	chr5	+	774	1	FSM	ENSMUSG00000029440.16	ENSMUST00000196137.2	774	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123366320	123367094	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_123366300_123367100
ENSMUST00000196156.2	chr5	-	1069	1	FSM	ENSMUSG00000025745.13	ENSMUST00000196156.2	1069	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30359988	30358919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_30358900_30360000
ENSMUST00000196169.2	chr5	-	1299	6	FSM	ENSMUSG00000036526.9	ENSMUST00000196169.2	1299	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	3.77359245282264	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGTTCTTATCCCACAG	NA	False	NA	NA	False	ATTAAA	-21	NA	140867960	140858746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_140859285_140860095_140860212_140862151_140862277_140863717_140863898_140866052_140866189_140867756
ENSMUST00000196202.5	chr3	-	495	5	FSM	ENSMUSG00000062006.13	ENSMUST00000196202.5	495	5	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_4	3611.9776092883	10847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATGCACATTTTTTAAGT	NA	False	NA	-56	True	NA	NA	NA	130523970	130520524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523837
ENSMUST00000196205.5	chr3	-	452	3	FSM	ENSMUSG00000090733.7	ENSMUST00000196205.5	452	3	0	0	0	0	multi-exon	TRUE	canonical	3	15374	junction_1	2726.5	25285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATGGTTTAAAACTGGTG	NA	False	NA	NA	False	TATAAA	-7	NA	90120608	90119828	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_90120061_90120240_90120352_90120499
ENSMUST00000196254.5	chr3	-	722	7	FSM	ENSMUSG00000059743.13	ENSMUST00000196254.5	722	7	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	875.011126913379	4372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAGTTACAACCGCCTCA	NA	False	NA	NA	False	NA	NA	NA	89002986	89001055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89001151_89001537_89001673_89001758_89001885_89002166_89002240_89002320_89002410_89002660_89002784_89002905
ENSMUST00000196266.5	chr3	-	1271	9	FSM	ENSMUSG00000038975.15	ENSMUST00000196266.5	1271	9	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_3	203.564140690348	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAGTCTTCTGAGTCCA	7028	False	NA	-29	True	AATAAA	-16	NA	153617718	153613090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561
ENSMUST00000196267.2	chr5	-	686	3	FSM	ENSMUSG00000053553.12	ENSMUST00000196267.2	686	3	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_2	36	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGTGTTTTGTTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	139446266	139349405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_139349919_139441171_139441302_139446223
ENSMUST00000196273.2	chr14	+	277	3	FSM	ENSMUSG00000010406.13	ENSMUST00000196273.2	277	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	660.5	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGACTCTCTCTGGCTT	NA	False	NA	20	True	AATAAA	-21	NA	54664507	54667206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_54664549_54664627_54664696_54667038
ENSMUST00000196292.2	chr3	-	726	3	FSM	ENSMUSG00000040943.13	ENSMUST00000196292.2	726	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	51	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGCTCTGAACTACTAG	NA	False	NA	NA	False	AATAAA	-14	NA	133250063	133219217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_133219696_133219789_133219935_133249960
ENSMUST00000196304.2	chr5	-	704	5	FSM	ENSMUSG00000007415.16	ENSMUST00000196304.2	704	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	182.946030293089	1222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTCTATTTATAATATAAC	NA	False	NA	-36	True	AATAAA	-17	NA	3707185	3691289	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_3691581_3693557_3693742_3694880_3694941_3696783_3696910_3707142
ENSMUST00000196466.2	chr3	-	448	3	FSM	ENSMUSG00000104960.2	ENSMUST00000196466.2	448	3	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_1	15.5	22335	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCCTGTTTCTGGA	NA	False	NA	48	True	AATAAA	-21	NA	123302053	123301200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_123301310_123301465_123301512_123301760
ENSMUST00000196483.5	chr5	-	2814	11	FSM	ENSMUSG00000039753.17	ENSMUST00000196483.5	2814	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	167.474057692527	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTTGTGTTGTGATTT	8869	False	NA	-1	True	AATAAA	-28	NA	43939451	43901957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_43902718_43908203_43908353_43915563_43916287_43917084_43917168_43918048_43918195_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
ENSMUST00000196566.5	chr5	-	1914	11	FSM	ENSMUSG00000029560.13	ENSMUST00000196566.5	1914	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	63.5911943589677	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGAGTGAGGAGGGGTTG	NA	False	NA	NA	False	NA	NA	NA	140368488	140326700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946_140346138_140368443
ENSMUST00000196640.5	chr5	-	2422	17	FSM	ENSMUSG00000029472.14	ENSMUST00000196640.5	2422	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	562.145162385793	10388	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGGTTTTTTTTTATTT	NA	False	NA	-17	True	AATAAA	-22	NA	122959350	122925783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_122926082_122926364_122926504_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ENSMUST00000196644.5	chr5	-	2511	18	FSM	ENSMUSG00000038095.16	ENSMUST00000196644.5	2511	18	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_17	149.186374694419	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAAAAAGAAGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	124564064	124531030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563909
ENSMUST00000196667.5	chr5	-	675	7	FSM	ENSMUSG00000047215.15	ENSMUST00000196667.5	675	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	5003.25345539169	11258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTATATATTGATTTGTG	NA	False	NA	-20	True	AATAAA	-2	NA	65548329	65545720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_65545811_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288
ENSMUST00000196695.5	chr3	+	2374	20	FSM	ENSMUSG00000028034.16	ENSMUST00000196695.5	2374	20	0	0	0	0	multi-exon	FALSE	canonical	1	416	junction_13	300.522177130688	712	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916155	151938408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
ENSMUST00000196709.5	chr3	-	1382	11	FSM	ENSMUSG00000059743.13	ENSMUST00000196709.5	1382	11	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_10	899.425283166979	22251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	-3	True	AATAAA	-14	NA	89009195	89000894	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89008227_89008444_89009168
ENSMUST00000196727.5	chr5	+	2749	12	FSM	ENSMUSG00000054099.12	ENSMUST00000196727.5	2749	12	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	12.5210566448736	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACAGATGTGTATTTGTG	NA	False	NA	NA	False	ATTAAA	-10	NA	8472857	8504789	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_8473040_8477195_8477268_8477407_8477517_8478628_8478689_8480430_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
ENSMUST00000196733.5	chr3	-	2555	12	FSM	ENSMUSG00000005968.15	ENSMUST00000196733.5	2555	12	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_9	16.8728840118112	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCCCCGTGGGTCTTT	6440	False	NA	-7	True	AATAAA	-14	NA	94566179	94520065	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94566031
ENSMUST00000196739.5	chr3	+	2526	20	FSM	ENSMUSG00000028034.16	ENSMUST00000196739.5	2526	20	0	0	0	0	multi-exon	FALSE	canonical	1	74	junction_19	415.06742768987	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916134	151938408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151937891
ENSMUST00000196769.5	chr3	+	1702	13	FSM	ENSMUSG00000001016.13	ENSMUST00000196769.5	1702	13	0	0	0	0	multi-exon	FALSE	canonical	3	1252	junction_8	69.553137160655	4024	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGCTTTTGGTTTTATTTT	NA	False	NA	13	True	ATTAAA	-13	NA	90383432	90395270	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394405_90394533_90394625_90394765
ENSMUST00000196788.2	chr9	-	1424	2	FSM	ENSMUSG00000032480.18	ENSMUST00000196788.2	1424	2	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	0	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	109946442	109943243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_109944651_109946425
ENSMUST00000196997.2	chr5	-	241	2	FSM	ENSMUSG00000029580.15	ENSMUST00000196997.2	241	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTGATGTATGAAGGCTT	5828	False	NA	53	True	NA	NA	NA	142889409	142888988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_142889156_142889335
ENSMUST00000197044.2	chr5	+	714	1	FSM	ENSMUSG00000029614.14	ENSMUST00000197044.2	714	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1482	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAACAAAAAA	NA	False	NA	NA	False	AAAAAG	-10	NA	121342608	121343322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_121342600_121343300
ENSMUST00000197074.5	chr5	-	2413	17	FSM	ENSMUSG00000029472.14	ENSMUST00000197074.5	2413	17	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_8	522.501461570922	11031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGGGTTTTTTTTTAT	NA	False	NA	-19	True	AATAAA	-20	NA	122959343	122925785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938672_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ENSMUST00000197075.2	chr3	-	795	1	FSM	ENSMUSG00000104795.2	ENSMUST00000197075.2	795	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96632636	96631841	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_96631800_96632600
ENSMUST00000197095.5	chr5	+	617	4	FSM	ENSMUSG00000097908.8	ENSMUST00000197095.5	617	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	17.326921891156	2948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCTTCATCTATGGTCT	NA	False	NA	NA	False	NA	NA	NA	136948205	136962539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_136948286_136951160_136951282_136954557_136954750_136962315
ENSMUST00000197111.2	chr3	-	419	4	FSM	ENSMUSG00000027679.14	ENSMUST00000197111.2	419	4	0	0	0	0	multi-exon	FALSE	canonical	3	3089	junction_3	316.042191276207	1481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATCAGTGTCTTGGTATA	NA	False	NA	-4	True	AATAAA	-44	NA	34134329	34131502	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232
ENSMUST00000197264.2	chr3	+	410	1	FSM	ENSMUSG00000002228.8	ENSMUST00000197264.2	410	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTGTGTCATTATTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	104692924	104693334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_104692900_104693300
ENSMUST00000197361.5	chr3	-	329	4	FSM	ENSMUSG00000090733.7	ENSMUST00000197361.5	329	4	0	0	0	0	multi-exon	FALSE	canonical	2	296	junction_1	8530.83639249725	37028	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120955	90119977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_90120048_90120240_90120352_90120499_90120609_90120916
ENSMUST00000197370.5	chr3	-	655	3	FSM	ENSMUSG00000105837.5	ENSMUST00000197370.5	655	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	7.5	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGAACCCATTTTTTTC	6961	False	NA	NA	False	AATAAA	-8	NA	129325758	129321115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_129321464_129324707_129324814_129325557
ENSMUST00000197385.2	chr5	+	697	2	FSM	ENSMUSG00000040274.12	ENSMUST00000197385.2	697	2	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	0	553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACAGTGTCACGGACGGA	NA	False	NA	NA	False	NA	NA	NA	3393915	3440693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_3394600_3440680
ENSMUST00000197394.2	chr14	-	1504	1	FSM	ENSMUSG00000022160.19	ENSMUST00000197394.2	1504	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	52542581	52541077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52541100_52542600
ENSMUST00000197432.5	chr3	-	370	3	FSM	ENSMUSG00000027944.14	ENSMUST00000197432.5	370	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	976.5	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTTAGTCTTGGTTT	9617	False	NA	NA	False	AATAAA	-16	NA	89903577	89902762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89903018_89903120_89903212_89903553
ENSMUST00000197440.5	chr14	-	2278	12	FSM	ENSMUSG00000000958.11	ENSMUST00000197440.5	2278	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_11	56.5898685556036	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTCTGAGTGGCTTTATT	NA	False	NA	-6	True	AATAAA	-15	NA	54655156	54606900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54651336_54651471_54654045_54654228_54655113
ENSMUST00000197460.5	chr9	-	1290	7	FSM	ENSMUSG00000032494.13	ENSMUST00000197460.5	1290	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	2178.41216383759	13062	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAGAGAAGAAAAACTAT	NA	False	NA	NA	False	NA	NA	NA	110775162	110769310	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110771835_110771898_110772219_110772322_110773258_110773312_110774891
ENSMUST00000197466.5	chr5	-	2972	20	FSM	ENSMUSG00000037364.13	ENSMUST00000197466.5	2972	20	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	165.9658376889	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAACTGTGTGCTGTATG	8265	False	NA	-12	True	AGTAAA	-18	NA	137305928	137293976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_137294169_137294248_137294355_137294479_137294570_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
ENSMUST00000197488.5	chr3	+	3827	19	FSM	ENSMUSG00000068823.11	ENSMUST00000197488.5	3827	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	4738.14950757918	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAATCCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	102927979	102965120	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_102928208_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ENSMUST00000197502.5	chr3	+	2751	27	FSM	ENSMUSG00000027751.14	ENSMUST00000197502.5	2751	27	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_20	89.4210256174979	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGTACATACCAATCGCAG	NA	False	NA	-92	True	NA	NA	NA	54600227	54636057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
ENSMUST00000197539.5	chr3	+	2515	7	FSM	ENSMUSG00000078578.10	ENSMUST00000197539.5	2515	7	0	0	0	0	multi-exon	FALSE	canonical	2	2193	junction_4	278.873129258131	905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGATTGTTTGACAAGT	NA	False	NA	11	True	AATAAA	-12	NA	135144897	135172434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUST00000197565.3	chr13	-	1391	10	FSM	ENSMUSG00000003062.14	ENSMUST00000197565.3	1391	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	324.011659598163	693	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTGTGTTGTCTGTAT	NA	False	NA	0	True	AATAAA	-19	NA	19579904	19541845	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19575142_19575268_19579873
ENSMUST00000197694.5	chr3	+	2129	17	FSM	ENSMUSG00000027680.16	ENSMUST00000197694.5	2129	17	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_15	164.164884719601	3309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTTTGTTTTCAAAAT	4859	False	NA	20	True	ATTAAA	-23	NA	34074256	34123494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
ENSMUST00000197719.5	chr5	-	2383	17	FSM	ENSMUSG00000029472.14	ENSMUST00000197719.5	2383	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	591.121150732868	9646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGGTTTTTTTTTATTT	NA	False	NA	-17	True	AATAAA	-22	NA	122959350	122925783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_122926082_122926364_122926504_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ENSMUST00000197767.5	chr3	-	1092	7	FSM	ENSMUSG00000027944.14	ENSMUST00000197767.5	1092	7	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	640.345588118027	12279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTAGTCTTGGTTTTGT	7221	False	NA	NA	False	AATAAA	-19	NA	89905973	89902759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904873_89905044_89905311_89905834
ENSMUST00000197786.5	chr3	-	857	6	FSM	ENSMUSG00000027944.14	ENSMUST00000197786.5	857	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	742.362876226984	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTTAGTCTTGGTTT	7210	False	NA	NA	False	AATAAA	-16	NA	89905984	89902762	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89905108_89905311_89905834
ENSMUST00000197859.5	chr3	+	3833	8	FSM	ENSMUSG00000078578.10	ENSMUST00000197859.5	3833	8	0	0	0	0	multi-exon	FALSE	canonical	2	870	junction_1	657.273775778808	2431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGTCTTACTCAGTAAT	NA	False	NA	5	True	ATTAAA	-18	NA	135144325	135173959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUST00000197946.5	chr5	-	1206	6	FSM	ENSMUSG00000015806.13	ENSMUST00000197946.5	1206	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	392.953635941952	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTACACATAGGGGTCC	NA	False	NA	6	True	AATAAA	-40	NA	45607463	45591369	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_45592021_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607348
ENSMUST00000197973.2	chr3	+	321	1	FSM	ENSMUSG00000105388.2	ENSMUST00000197973.2	321	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5788	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGATTTTGTTATGAAGAC	8301	False	NA	NA	False	NA	NA	NA	145584774	145585095	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_145584800_145585100
ENSMUST00000198051.5	chr3	+	2127	15	FSM	ENSMUSG00000027680.16	ENSMUST00000198051.5	2127	15	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_14	198.096296929405	2008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTTTGTTTTCAAAAT	4856	False	NA	20	True	ATTAAA	-23	NA	34074253	34123494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34123065
ENSMUST00000198077.2	chr9	+	1150	1	FSM	ENSMUSG00000019659.9	ENSMUST00000198077.2	1150	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	103	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAACAAAAAAAAAAAAAAAA	8504	False	NA	NA	False	NA	NA	NA	110485592	110486742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_110485600_110486700
ENSMUST00000198180.5	chr3	+	3849	19	FSM	ENSMUSG00000068823.11	ENSMUST00000198180.5	3849	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	4600.96803991519	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAACAATGACAAGGGTCAG	NA	False	NA	NA	False	NA	NA	NA	102927922	102965307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
ENSMUST00000198201.5	chr9	+	930	6	FSM	ENSMUSG00000032478.15	ENSMUST00000198201.5	930	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	211.367547177896	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCCAGGCTGGCAGTACT	NA	False	NA	7	True	AATAAA	-14	NA	109661854	109672024	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_109661876_109662263_109662364_109668675_109668779_109670543_109670584_109670994_109671156_109671519
ENSMUST00000198334.2	chr5	-	520	3	FSM	ENSMUSG00000104529.5	ENSMUST00000198334.2	520	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	7.5	675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTCGCCTCCTATTC	3477	False	NA	0	True	AATAAA	-19	NA	143151506	143150533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_143150848_143151184_143151305_143151420
ENSMUST00000198350.5	chr3	-	1399	10	FSM	ENSMUSG00000038975.15	ENSMUST00000198350.5	1399	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_9	303.195735987477	3595	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTTGTGTATATAGCT	6182	False	NA	-4	True	AATAAA	-44	NA	153618564	153612927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618550
ENSMUST00000198386.5	chr3	+	1894	14	FSM	ENSMUSG00000027959.15	ENSMUST00000198386.5	1894	14	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_7	10.1538461538462	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGATGTCTGCAGCATCT	NA	False	NA	NA	False	TATAAA	-22	NA	116388630	116415251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_116388828_116397110_116397172_116398845_116398926_116399313_116399419_116400971_116401144_116402032_116402099_116403912_116404033_116407554_116407747_116411904_116412100_116412208_116412299_116412372_116412553_116412899_116412982_116413706_116413841_116415031
ENSMUST00000198389.5	chr3	-	3020	7	FSM	ENSMUSG00000027708.15	ENSMUST00000198389.5	3020	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	72.6989607139531	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAGTTAAGGTTGTTC	NA	False	NA	NA	False	TATAAA	-31	NA	35984223	35947654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_35949849_35951612_35951710_35951941_35952025_35970368_35970500_35973149_35973319_35975119_35975337_35984094
ENSMUST00000198453.2	chr5	+	457	5	FSM	ENSMUSG00000016833.15	ENSMUST00000198453.2	457	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	769.215631341433	1655	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTGAGTGGAAATGTCT	NA	False	NA	48	True	AATAAA	-30	NA	100946608	100952334	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_100946727_100949773_100949858_100950918_100950977_100951835_100951896_100952197
ENSMUST00000198454.2	chr3	-	880	1	FSM	ENSMUSG00000033439.13	ENSMUST00000198454.2	880	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	219	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTACTAACCTGCTATACA	NA	False	NA	NA	False	AAAAAG	-7	NA	116388487	116387607	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_116387600_116388500
ENSMUST00000198509.2	chr3	-	776	1	FSM	ENSMUSG00000104960.2	ENSMUST00000198509.2	776	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	927	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGACTGTGTCCTGTTTCT	NA	False	NA	45	True	AATAAA	-18	NA	123301979	123301203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_123301200_123302000
ENSMUST00000198513.6	chr3	-	1146	7	FSM	ENSMUSG00000028029.12	ENSMUST00000198513.6	1146	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	349.626785142227	9119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTTTTTTGATTCGTCT	NA	False	NA	2	True	TATAAA	-20	NA	132389883	132366241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_132366503_132373145_132373315_132377739_132377949_132379725_132379891_132380509_132380624_132382765_132382900_132389789
ENSMUST00000198526.5	chr5	-	3001	19	FSM	ENSMUSG00000037364.13	ENSMUST00000198526.5	3001	19	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	246.227361558879	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTAACTGTGTGCTGTA	8510	False	NA	-14	True	AGTAAA	-16	NA	137305683	137293978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298010_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307
ENSMUST00000198700.2	chr3	-	1007	3	FSM	ENSMUSG00000005813.13	ENSMUST00000198700.2	1007	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	178.5	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTAAGGTCTGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	138174715	138165441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_138166262_138168125_138168192_138174594
ENSMUST00000198738.5	chr3	+	1373	6	FSM	ENSMUSG00000001016.13	ENSMUST00000198738.5	1373	6	0	0	0	0	multi-exon	FALSE	canonical	3	1316	junction_1	40.3464992285576	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAACGAAAACAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	90383453	90389658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670
ENSMUST00000198837.3	chr5	+	677	6	FSM	ENSMUSG00000105078.3	ENSMUST00000198837.3	677	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.03960780543711	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACAGAGCTCTGCACCCA	NA	False	NA	NA	False	AATAAA	-13	NA	100054174	100098951	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_100054265_100067054_100067126_100070875_100070973_100072700_100072803_100089084_100089247_100098796
ENSMUST00000198878.2	chr3	+	2050	13	FSM	ENSMUSG00000028173.11	ENSMUST00000198878.2	2050	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_12	7.78888096369861	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTATTATTTCCGTTTAT	NA	False	NA	NA	False	NA	NA	NA	159545373	159644300	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_159545685_159578545_159578819_159602967_159603093_159607018_159607181_159612751_159612889_159615289_159615459_159616934_159617033_159617396_159617461_159619397_159619542_159620572_159620657_159629062_159629217_159639886_159640006_159644090
ENSMUST00000198960.2	chr5	-	812	5	FSM	ENSMUSG00000033467.13	ENSMUST00000198960.2	812	5	0	0	0	0	multi-exon	FALSE	canonical	1	13	junction_3	269.602021505774	3174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTAATGCGGCCAGCCATC	NA	False	NA	-13	True	NA	NA	NA	109704339	109702580	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_109702937_109703138_109703224_109703372_109703527_109703884_109704048_109704285
ENSMUST00000198968.2	chr3	+	2916	17	FSM	ENSMUSG00000027722.15	ENSMUST00000198968.2	2916	17	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_15	114.842266146876	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGTTTTATCTTGTGCTT	NA	False	NA	11	True	AATAAA	-20	NA	37474460	37633245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_37474650_37478659_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37584131_37584169_37632900
ENSMUST00000199001.2	chr3	-	573	1	FSM	ENSMUSG00000062006.13	ENSMUST00000199001.2	573	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	983	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCTTCCGTTATCTGTGAT	NA	False	NA	-14	True	AATAAA	-17	NA	130521055	130520482	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_130520500_130521100
ENSMUST00000199009.2	chr3	+	716	5	FSM	ENSMUSG00000028140.14	ENSMUST00000199009.2	716	5	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_4	29.7195222034272	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGGAGTTATTCTTGGT	8483	False	NA	NA	False	TATAAA	-18	NA	94350624	94354148	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942
ENSMUST00000199014.5	chr3	-	1280	6	FSM	ENSMUSG00000027944.14	ENSMUST00000199014.5	1280	6	0	0	0	0	multi-exon	FALSE	canonical	3	1706	junction_4	119.761429517186	5328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGTCTTAGTCTTGGTT	7201	False	NA	NA	False	AATAAA	-15	NA	89905993	89902763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89905311_89905834
ENSMUST00000199031.5	chr3	-	640	3	FSM	ENSMUSG00000090733.7	ENSMUST00000199031.5	640	3	0	0	0	0	multi-exon	FALSE	canonical	3	15374	junction_1	2726.5	8120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	-2	True	AATAAA	-19	NA	90120941	90119973	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_90120061_90120240_90120352_90120499
ENSMUST00000199033.5	chr3	+	1127	11	FSM	ENSMUSG00000074182.9	ENSMUST00000199033.5	1127	11	0	0	0	0	multi-exon	TRUE	canonical	3	509	junction_1	98.0487633782293	5811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGTGCATGTTACTGCC	NA	False	NA	49	True	ATTAAA	-23	NA	145281959	145309868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_145282049_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
ENSMUST00000199041.2	chr3	+	1062	9	FSM	ENSMUSG00000036503.14	ENSMUST00000199041.2	1062	9	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_8	24.8281594162757	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTCTTCATACAATAGT	NA	False	NA	NA	False	AATAAA	-23	NA	57643540	57740653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384
ENSMUST00000199139.2	chr5	+	1252	1	FSM	ENSMUSG00000105954.2	ENSMUST00000199139.2	1252	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	276	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGACTAACTACGACCATGA	NA	False	NA	NA	False	CATAAA	-10	NA	104582986	104584238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_104583000_104584200
ENSMUST00000199155.2	chr3	-	2161	2	FSM	ENSMUSG00000097639.3	ENSMUST00000199155.2	2161	2	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	0	1623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTACCTTGGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	41447625	41442113	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_41444172_41447522
ENSMUST00000199163.2	chr3	-	877	6	FSM	ENSMUSG00000027944.14	ENSMUST00000199163.2	877	6	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_5	683.893149548963	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCCGCACTGTGGTAGACA	7207	False	NA	NA	False	AATATA	-30	NA	89905987	89903200	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905411_89905834
ENSMUST00000199195.3	chr14	+	463	4	FSM	ENSMUSG00000010406.13	ENSMUST00000199195.3	463	4	0	0	0	0	multi-exon	FALSE	canonical	3	1331	junction_1	96.858430482615	8491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGACTCTCTCTGGCTT	NA	False	NA	20	True	AATAAA	-21	NA	54664386	54667206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_54664549_54664627_54664696_54666040_54666106_54667038
ENSMUST00000199243.5	chr5	-	2988	20	FSM	ENSMUSG00000037364.13	ENSMUST00000199243.5	2988	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	194.772841622735	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTGTGCTGTATGTCCC	8265	False	NA	-8	True	AGTAAA	-22	NA	137305928	137293972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_137294169_137294248_137294355_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
ENSMUST00000199317.2	chr3	-	743	4	Antisense	novelGene_ENSMUSG00000087260.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16894	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGAGGCGGGCGCCTGGAC	NA	False	NA	NA	False	AAAACA	-38	NA	107191398	107186314	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr3_-_107186430_107187185_107187248_107189224_107189343_107190950
ENSMUST00000199320.5	chr5	+	369	4	FSM	ENSMUSG00000029177.10	ENSMUST00000199320.5	369	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	727.263821915175	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGACAGTGGTGTCGGA	9246	False	NA	NA	False	NA	NA	NA	30824300	30831408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_30824458_30829807_30829915_30830325_30830404_30831381
ENSMUST00000199346.2	chr3	+	1300	1	FSM	ENSMUSG00000028093.16	ENSMUST00000199346.2	1300	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGCACCCCTCCTCTCT	NA	False	NA	NA	False	NA	NA	NA	97066411	97067711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_97066400_97067700
ENSMUST00000199406.5	chr5	-	2413	17	FSM	ENSMUSG00000029472.14	ENSMUST00000199406.5	2413	17	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_3	528.705609099951	10382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGAAGTGGGTTTTTTT	NA	False	NA	-23	True	AATAAA	-16	NA	122959343	122925789	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_122926082_122926364_122926528_122929670_122929799_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ENSMUST00000199428.2	chr3	-	672	2	FSM	ENSMUSG00000090733.7	ENSMUST00000199428.2	672	2	0	0	0	0	multi-exon	FALSE	canonical	3	20827	junction_1	0	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTTTAGCACTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	90120953	90120133	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_90120352_90120499
ENSMUST00000199464.5	chr3	-	2037	16	FSM	ENSMUSG00000028107.15	ENSMUST00000199464.5	2037	16	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_13	192.904973727711	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662163	95647287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95660318_95660443_95661630_95661828_95662069
ENSMUST00000199549.4	chr15	-	108	1	FSM	ENSMUSG00000105167.4	ENSMUST00000199549.4	108	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	49	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTGTTTGAGGCCGACTT	3970	False	NA	NA	False	NA	NA	NA	79967155	79967047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_79967000_79967200
ENSMUST00000199592.5	chr9	+	1304	7	FSM	ENSMUSG00000054836.13	ENSMUST00000199592.5	1304	7	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	18.4157239577729	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTGGAGGTTGTCTTT	2182	False	NA	7	True	AATAAA	-17	NA	110134240	110150391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_110134418_110139162_110139242_110141636_110141708_110143043_110143163_110144818_110145021_110148637_110148785_110149882
ENSMUST00000199593.2	chr3	-	638	2	FSM	ENSMUSG00000028127.11	ENSMUST00000199593.2	638	2	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAGAAAAGAAAAG	7236	False	NA	NA	False	NA	NA	NA	121608846	121589685	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_121590135_121608657
ENSMUST00000199613.5	chr3	+	738	8	FSM	ENSMUSG00000078578.10	ENSMUST00000199613.5	738	8	0	0	0	0	multi-exon	FALSE	canonical	2	236	junction_1	865.692126071883	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAATTACTGTTCCTTTTT	NA	False	NA	-4	True	AATAAA	-3	NA	135144076	135171047	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_135144194_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
ENSMUST00000199617.2	chr5	+	827	5	FSM	ENSMUSG00000029177.10	ENSMUST00000199617.2	827	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	705.72033235553	1129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCTTGAATCTGTTGTATG	9287	False	NA	17	True	AATAAA	-1	NA	30824341	30831730	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_30824458_30829807_30829915_30830325_30830404_30830610_30830788_30831381
ENSMUST00000199628.2	chr3	+	464	2	FSM	ENSMUSG00000038374.11	ENSMUST00000199628.2	464	2	0	0	0	0	multi-exon	FALSE	canonical	3	2531	junction_1	0	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTAAATAGGACCTATG	8675	False	NA	NA	False	NA	NA	NA	96537288	96537870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_96537678_96537795
ENSMUST00000199633.2	chr3	-	643	3	FSM	ENSMUSG00000106223.2	ENSMUST00000199633.2	643	3	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	18	848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGACTTGTTTAACTATT	NA	False	NA	-2	True	AATAAA	-27	NA	41482909	41476638	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_41476891_41477364_41477680_41482833
ENSMUST00000199645.2	chr3	-	528	2	FSM	ENSMUSG00000104960.2	ENSMUST00000199645.2	528	2	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_1	0	17686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGACTGTGTCCTGTTT	NA	False	NA	43	True	AATAAA	-16	NA	123301982	123301205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_123301512_123301760
ENSMUST00000199689.2	chr14	+	429	3	FSM	ENSMUSG00000010406.13	ENSMUST00000199689.2	429	3	0	0	0	0	multi-exon	FALSE	canonical	3	1524	junction_2	11.5	1032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCCAGACTCTCTCTGG	NA	False	NA	17	True	AATAAA	-18	NA	54664496	54667203	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_54664696_54666040_54666106_54667038
ENSMUST00000199742.2	chr3	-	1570	1	FSM	ENSMUSG00000055436.19	ENSMUST00000199742.2	1570	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	157737391	157735821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_157735800_157737400
ENSMUST00000199834.5	chr3	-	3494	26	FSM	ENSMUSG00000042520.17	ENSMUST00000199834.5	3494	26	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_21	230.048746138726	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTCTGCGTTCTTTCCGT	3507	False	NA	-4	True	AATAAA	-19	NA	89959822	89913526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946121_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
ENSMUST00000199910.5	chr3	+	2610	4	FSM	ENSMUSG00000041220.11	ENSMUST00000199910.5	2610	4	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	79.2001683499894	661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	129326003	129428620	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_129326418_129398689_129398822_129421931_129422084_129426708
ENSMUST00000199937.5	chr5	+	2190	14	FSM	ENSMUSG00000029521.8	ENSMUST00000199937.5	2190	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	77.8046408010314	546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAATGTTAGTAGTTTG	9182	False	NA	19	True	NA	NA	NA	110987848	111021999	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
ENSMUST00000200058.5	chr5	-	1174	7	FSM	ENSMUSG00000029472.14	ENSMUST00000200058.5	1174	7	0	0	0	0	multi-exon	FALSE	canonical	3	1753	junction_2	189.823382823789	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAATTTTATTTTTAAAA	NA	False	NA	NA	False	AAGAAA	-6	NA	122959081	122943906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ENSMUST00000200086.5	chr3	+	2158	15	FSM	ENSMUSG00000027680.16	ENSMUST00000200086.5	2158	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	331.643780190094	577	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGGGGGGAGGTGGGTG	4849	False	NA	46	True	AAAAAG	-44	NA	34074246	34123520	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_34074313_34093675_34093729_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
ENSMUST00000200153.5	chr5	+	670	4	FSM	ENSMUSG00000007987.13	ENSMUST00000200153.5	670	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_3	7.34846922834953	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTAAAAGTTTTTTCATAG	4107	False	NA	NA	False	NA	NA	NA	136937055	136940976	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_136937125_136939977_136940055_136940155_136940246_136940542
ENSMUST00000200284.5	chr5	-	1405	8	FSM	ENSMUSG00000033467.13	ENSMUST00000200284.5	1405	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	232.416937104552	3703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109706802	109702574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705616_109706670
ENSMUST00000200296.2	chr9	+	599	3	FSM	ENSMUSG00000019659.9	ENSMUST00000200296.2	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	709	junction_1	13.5	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGAGGCCTGTTGTTTCA	6251	False	NA	10	True	AATAAA	-10	NA	110538961	110540655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_110539024_110539194_110539230_110540153
ENSMUST00000200298.2	chr5	+	2632	11	FSM	ENSMUSG00000050017.12	ENSMUST00000200298.2	2632	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	361.683231571495	598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	16	True	AATAAA	-17	NA	111478672	111536225	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494441_111494985_111494994_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111534368
ENSMUST00000200305.2	chr3	-	546	4	FSM	ENSMUSG00000090733.7	ENSMUST00000200305.2	546	4	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8789.54951443285	8028	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120930	90119977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120687
ENSMUST00000200314.5	chr5	-	588	2	FSM	ENSMUSG00000104529.5	ENSMUST00000200314.5	588	2	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	0	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTCGCCTCCTATTC	3525	False	NA	0	True	AATAAA	-19	NA	143151458	143150533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_143150848_143151184
ENSMUST00000200323.3	chr13	-	1128	8	FSM	ENSMUSG00000003062.14	ENSMUST00000200323.3	1128	8	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	267.855352374968	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCATGCCCCTGCTTT	NA	False	NA	-3	True	AATAAA	-18	NA	19579904	19549125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_19549516_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
ENSMUST00000200474.5	chr5	-	2413	17	FSM	ENSMUSG00000038095.16	ENSMUST00000200474.5	2413	17	0	0	0	0	multi-exon	TRUE	canonical	3	85	junction_15	101.972863271314	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGATCCAGATTCCATT	NA	False	NA	NA	False	NA	NA	NA	124563656	124531012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548443_124552461_124552591_124563509
ENSMUST00000200486.5	chr3	+	1231	6	FSM	ENSMUSG00000041912.13	ENSMUST00000200486.5	1231	6	0	0	0	0	multi-exon	FALSE	canonical	2	27	junction_5	8.74070935336486	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTATGTGTATGTATGT	NA	False	NA	NA	False	ATTAAA	-26	NA	94320623	94333695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331998_94332869_94333010_94333097
ENSMUST00000200517.2	chr3	-	1232	3	FSM	ENSMUSG00000062006.13	ENSMUST00000200517.2	1232	3	0	0	0	0	multi-exon	FALSE	canonical	3	8385	junction_1	618	660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCAAAGTCCTTATGAGAC	NA	False	NA	NA	False	NA	NA	NA	130523995	130522486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_-_130522501_130522699_130522800_130522877
ENSMUST00000200524.5	chr3	+	2552	20	FSM	ENSMUSG00000028034.16	ENSMUST00000200524.5	2552	20	0	0	0	0	multi-exon	FALSE	canonical	1	74	junction_19	393.500738277491	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCGGTAAGTTGGATAT	NA	False	NA	26	True	AATAAA	-16	NA	151916118	151938409	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151937891
ENSMUST00000200525.2	chr3	+	293	1	FSM	ENSMUSG00000104803.2	ENSMUST00000200525.2	293	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTCGGCCGATGGGCTG	NA	False	NA	NA	False	NA	NA	NA	115707538	115707831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_115707500_115707800
ENSMUST00000200566.5	chr5	+	1422	8	FSM	ENSMUSG00000029089.9	ENSMUST00000200566.5	1422	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	26.2717354134182	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTAGTTCTACATATATG	NA	False	NA	14	True	ATTAAA	-22	NA	48529774	48546188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48536671_48536807_48537465_48537574_48539128_48539210_48545444
ENSMUST00000200630.2	chr5	+	634	4	FSM	ENSMUSG00000029521.8	ENSMUST00000200630.2	634	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	147.790392109907	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGGCTTGGTTTCTCTGA	NA	False	NA	NA	False	AATAAA	-43	NA	110989319	110997759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_110989410_110996254_110996380_110996495_110996644_110997488
ENSMUST00000200645.5	chr5	-	2404	17	FSM	ENSMUSG00000029472.14	ENSMUST00000200645.5	2404	17	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_8	345.39967790952	4203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTCTGAAGTGGGTTT	NA	False	NA	-27	True	AATAAA	-12	NA	122959357	122925793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
ENSMUST00000200657.5	chr5	-	1668	10	FSM	ENSMUSG00000035234.19	ENSMUST00000200657.5	1668	10	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	36.8299395118217	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTAATATCTTATTTTT	NA	False	NA	-3	True	AATAAA	-19	NA	100968806	100953057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_100953318_100953763_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
ENSMUST00000200718.2	chr5	-	377	2	FSM	ENSMUSG00000097191.3	ENSMUST00000200718.2	377	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTGTCTGAGATGTGCA	8079	False	NA	NA	False	AATAAA	-12	NA	149060222	149056378	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_149056640_149060106
ENSMUST00000200730.4	chr5	+	2019	16	FSM	ENSMUSG00000029146.15	ENSMUST00000200730.4	2019	16	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	132.900564332888	1052	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTACCTTTGGTTCCCTC	NA	False	NA	15	True	ATTAAA	-15	NA	31350637	31356238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31350810_31351212_31351288_31352139_31352258_31352549_31352624_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
ENSMUST00000200744.4	chr5	-	1653	7	FSM	ENSMUSG00000107283.4	ENSMUST00000200744.4	1653	7	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	140.104722737434	995	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGAATTGTGTCTTTA	NA	False	NA	NA	False	TTTAAA	-4	NA	31311566	31298006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31299195_31302043_31302097_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
ENSMUST00000200840.2	chr5	-	1371	3	FSM	ENSMUSG00000041132.12	ENSMUST00000200840.2	1371	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	1.5	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATATGTCTTGTCTTTCAA	4560	False	NA	NA	False	AATAAA	-17	NA	150517993	150515216	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_150516025_150516604_150516903_150517728
ENSMUST00000200874.2	chr5	-	896	4	FSM	ENSMUSG00000040731.14	ENSMUST00000200874.2	896	4	0	0	0	0	multi-exon	FALSE	canonical	3	2106	junction_3	61.0482504981829	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCGTCCTAGATAGGGGT	2225	False	NA	NA	False	NA	NA	NA	134668156	134653735	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_134654317_134654394_134654460_134656441_134656630_134668094
ENSMUST00000200889.4	chr10	+	2384	4	FSM	ENSMUSG00000096795.5	ENSMUST00000200889.4	2384	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	8.5764535535124	741	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATACTGCCATCCATT	NA	False	NA	NA	False	AATAAA	-23	NA	81540658	81557810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_81540735_81554752_81554880_81555078_81555140_81555690
ENSMUST00000200890.2	chr6	-	919	3	FSM	ENSMUSG00000000399.11	ENSMUST00000200890.2	919	3	0	0	0	0	multi-exon	FALSE	canonical	3	1175	junction_2	32	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAGTTCCAGGACAGCC	NA	False	NA	NA	False	NA	NA	NA	126826099	126820693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_126821369_126821753_126821925_126826026
ENSMUST00000200905.2	chr5	-	1046	1	FSM	ENSMUSG00000029397.16	ENSMUST00000200905.2	1046	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAGAAAAAAAAAAAAA	1677	False	NA	NA	False	NA	NA	NA	92110585	92109539	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92109500_92110600
ENSMUST00000200935.4	chr5	+	1139	8	FSM	ENSMUSG00000029152.14	ENSMUST00000200935.4	1139	8	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_7	334.9632937551	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	15	True	AATAAA	-16	NA	73450237	73471284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73470785
ENSMUST00000200942.2	chr5	+	840	7	FSM	ENSMUSG00000013622.16	ENSMUST00000200942.2	840	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	101.141402666432	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAATGCTGCCGTACCTGT	932	False	NA	7	True	AATAAA	-20	NA	31206002	31211962	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31206101_31206805_31206828_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
ENSMUST00000200948.2	chr7	-	1430	3	FSM	ENSMUSG00000030680.7	ENSMUST00000200948.2	1430	3	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_2	10	1741	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACTCAGGAGGCAGAGGCA	9430	False	NA	-2	True	NA	NA	NA	126616524	126614204	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126614642_126615371_126615455_126615614
ENSMUST00000200973.4	chr7	+	578	5	FSM	ENSMUSG00000064194.11	ENSMUST00000200973.4	578	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	196.935268552893	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCCAGCTATCTTCGAA	NA	False	NA	NA	False	NA	NA	NA	42827046	42838926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_42827128_42836593_42836721_42836916_42836978_42838466_42838575_42838725
ENSMUST00000201011.2	chr16	+	914	6	FSM	ENSMUSG00000052917.16	ENSMUST00000201011.2	914	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	10.507140429251	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCTTGCCTTGCTAGCC	NA	False	NA	NA	False	ACTAAA	-17	NA	55895842	55946783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_55895942_55902718_55902772_55917702_55917795_55931968_55932167_55944141_55944334_55946503
ENSMUST00000201024.2	chr6	+	1264	1	FSM	ENSMUSG00000029761.17	ENSMUST00000201024.2	1264	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACCTTT	1305	False	NA	NA	False	NA	NA	NA	34686424	34687688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_34686400_34687700
ENSMUST00000201125.4	chr5	+	1352	9	FSM	ENSMUSG00000006638.16	ENSMUST00000201125.4	1352	9	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	7.48331477354788	467	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTGAGGTTCCCTTTCC	NA	False	NA	19	True	ATTAAA	-21	NA	31107409	31112435	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31107593_31110228_31110390_31110686_31110870_31111010_31111057_31111222_31111336_31111434_31111610_31111748_31111798_31111877_31112044_31112159
ENSMUST00000201202.4	chr5	+	715	6	FSM	ENSMUSG00000052139.19	ENSMUST00000201202.4	715	6	0	0	0	0	multi-exon	FALSE	canonical	3	657	junction_3	63.9606128801155	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGTGATCGTTTAGCT	5882	False	NA	NA	False	AATAAA	-14	NA	31855357	31988560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428
ENSMUST00000201292.4	chr5	+	1529	7	FSM	ENSMUSG00000029203.17	ENSMUST00000201292.4	1529	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	633.60961079271	1453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGACATTAATTTTTAAAA	NA	False	NA	26	True	AATAAA	-27	NA	65694618	65753098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_65694802_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ENSMUST00000201329.2	chr6	+	1281	1	FSM	ENSMUSG00000029916.12	ENSMUST00000201329.2	1281	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAATCTCAAG	NA	False	NA	NA	False	NA	NA	NA	40302420	40303701	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_40302400_40303700
ENSMUST00000201333.4	chr5	+	1027	6	FSM	ENSMUSG00000029149.15	ENSMUST00000201333.4	1027	6	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_3	7.52063827078527	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409034	31410541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410437
ENSMUST00000201342.4	chr6	+	785	8	FSM	ENSMUSG00000029916.12	ENSMUST00000201342.4	785	8	0	0	0	0	multi-exon	FALSE	canonical	3	547	junction_1	45.5313303211791	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGGTGCTTTCTGTCAT	NA	False	NA	NA	False	AATACA	-19	NA	40302418	40345824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40333978_40334055_40341208_40341302_40343674_40343708_40345514
ENSMUST00000201422.4	chr5	-	1697	8	FSM	ENSMUSG00000029128.13	ENSMUST00000201422.4	1697	8	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	195.851880725393	1129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGATTTTCATT	NA	False	NA	-4	True	AATAAA	-14	NA	41865464	41782318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_41783206_41784329_41784425_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
ENSMUST00000201448.4	chr6	-	2669	14	FSM	ENSMUSG00000029924.13	ENSMUST00000201448.4	2669	14	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_9	72.7375113825747	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCTGCTTAAGCTTGACA	NA	False	NA	-7	True	AATAAA	-26	NA	39354606	39312918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
ENSMUST00000201483.4	chr5	+	638	4	FSM	ENSMUSG00000106918.4	ENSMUST00000201483.4	638	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	972.261624598372	5463	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTATACTCTTGTCTCTTA	NA	False	NA	12	True	AATAAA	-15	NA	31771360	31779981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31771612_31771946_31771966_31773724_31773832_31779720
ENSMUST00000201487.4	chr5	+	742	3	FSM	ENSMUSG00000052139.19	ENSMUST00000201487.4	742	3	0	0	0	0	multi-exon	FALSE	canonical	3	727	junction_2	56.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	5838	False	NA	NA	False	NA	NA	NA	31855313	31888792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31855422_31859169_31859322_31888310
ENSMUST00000201491.2	chr5	-	923	7	FSM	ENSMUSG00000107283.4	ENSMUST00000201491.2	923	7	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_6	59.0705792534095	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAGAGATGGTGCAGTGA	NA	False	NA	NA	False	NA	NA	NA	31311565	31301617	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
ENSMUST00000201534.2	chr5	-	1287	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201534.2	1287	8	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_1	63.5022095067951	1566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAGTCATTAGTGTGACA	NA	False	NA	-3	True	ATTAAA	-24	NA	135378897	135366219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378788
ENSMUST00000201571.4	chr5	+	1087	7	FSM	ENSMUSG00000029162.16	ENSMUST00000201571.4	1087	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	5.24933858267454	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGCAAGCGGCACCAGCT	1142	False	NA	NA	False	NA	NA	NA	31078933	31088390	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31079352_31082082_31082200_31085786_31085860_31086864_31087012_31087891_31087981_31088059_31088218_31088305
ENSMUST00000201625.4	chr5	+	902	7	FSM	ENSMUSG00000029149.15	ENSMUST00000201625.4	902	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	34.830143394607	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGATTACAGTTACTTG	NA	False	NA	9	True	AATAAA	-21	NA	31409065	31410546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410352_31410437
ENSMUST00000201674.2	chr5	+	967	6	FSM	ENSMUSG00000023104.10	ENSMUST00000201674.2	967	6	0	0	0	0	multi-exon	FALSE	canonical	3	1227	junction_5	81.2147769805471	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGCGTGTGTAAAGGTCA	NA	False	NA	NA	False	NA	NA	NA	134611610	134620488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972
ENSMUST00000201692.2	chr5	-	1246	1	FSM	ENSMUSG00000053134.14	ENSMUST00000201692.2	1246	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	31684046	31682800	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31682800_31684000
ENSMUST00000201784.4	chr5	-	1235	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201784.4	1235	8	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_7	331.894438590566	1201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAGTCATTAGTGTGACA	NA	False	NA	-3	True	ATTAAA	-24	NA	135378729	135366219	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378672
ENSMUST00000201791.4	chr5	-	1297	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201791.4	1297	8	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	339.384075967639	1072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCAGTACAATTCATTG	NA	False	NA	-1	True	AATAAA	-20	NA	135378868	135320557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_135320966_135366468_135366562_135368331_135368442_135368775_135368971_135374943_135375147_135376730_135376821_135378471_135378590_135378788
ENSMUST00000201887.4	chr5	+	1696	5	FSM	ENSMUSG00000013622.16	ENSMUST00000201887.4	1696	5	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	26.2202212042538	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAATGCTGCCGTACCTG	594	False	NA	6	True	AATAAA	-19	NA	31205664	31211961	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31206101_31206805_31206925_31209540_31210229_31211304_31211403_31211606
ENSMUST00000201937.4	chr5	+	889	7	FSM	ENSMUSG00000029149.15	ENSMUST00000201937.4	889	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	11.9361728465293	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409068	31410541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410437
ENSMUST00000201980.5	chr5	-	3097	6	FSM	ENSMUSG00000023452.20	ENSMUST00000201980.5	3097	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	330.561098739704	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTACCGTAGCTTTGT	7834	False	NA	NA	False	ATTAAA	-11	NA	32899819	32893652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_32895491_32895731_32895879_32896125_32896718_32897967_32898134_32898388_32898477_32899553
ENSMUST00000201984.4	chr5	+	1449	5	FSM	ENSMUSG00000029203.17	ENSMUST00000201984.4	1449	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	582.178398345387	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGACATTAATTTTTAAAA	NA	False	NA	26	True	AATAAA	-27	NA	65694633	65753098	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_65694890_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ENSMUST00000202183.2	chr5	+	312	1	FSM	ENSMUSG00000107149.2	ENSMUST00000202183.2	312	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3973	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACCAATCTTTAATTTCT	NA	False	NA	NA	False	NA	NA	NA	33932255	33932567	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_33932300_33932600
ENSMUST00000202241.4	chr5	-	903	8	FSM	ENSMUSG00000107283.4	ENSMUST00000202241.4	903	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	130.575335984048	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCATGCTATGGGGTTG	NA	False	NA	11	True	NA	NA	NA	31311572	31298801	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31299195_31302043_31302097_31302583_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
ENSMUST00000202243.4	chr5	+	839	5	FSM	ENSMUSG00000106918.4	ENSMUST00000202243.4	839	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	45.0832563153994	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATATCTCTATTCTTTA	NA	False	NA	NA	False	AATAAA	-24	NA	31771315	31812205	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31771367_31773724_31773832_31786959_31787065_31807646_31807829_31811811
ENSMUST00000202250.4	chr5	+	800	8	FSM	ENSMUSG00000029152.14	ENSMUST00000202250.4	800	8	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	366.22843323003	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTTTATGGTCCAACGT	NA	False	NA	NA	False	AATGAA	-5	NA	73450149	73464123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920
ENSMUST00000202258.4	chr5	-	1884	12	FSM	ENSMUSG00000029405.17	ENSMUST00000202258.4	1884	12	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_5	444.293682188997	1599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGCCCACTGAGTTCA	NA	False	NA	NA	False	AATGAA	-19	NA	92231517	92202358	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
ENSMUST00000202281.4	chr16	-	1355	11	FSM	ENSMUSG00000022540.17	ENSMUST00000202281.4	1355	11	0	0	0	0	multi-exon	FALSE	canonical	3	412	junction_7	47.5572286829247	1803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831381	4826593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831239_4831326
ENSMUST00000202306.2	chr18	+	398	2	FSM	ENSMUSG00000024472.10	ENSMUST00000202306.2	398	2	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	0	2109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCCCCTTTTTGTTTTTC	NA	False	NA	13	True	AATAAA	-14	NA	44513568	44529152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_44513754_44528939
ENSMUST00000202361.4	chr5	-	3802	18	FSM	ENSMUSG00000029657.16	ENSMUST00000202361.4	3802	18	0	0	0	0	multi-exon	FALSE	canonical	3	1194	junction_12	107.653101726883	1099	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGAGTTCTTTTGTTGTC	NA	False	NA	11	True	TTTAAA	-13	NA	149559803	149540008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
ENSMUST00000202535.4	chr7	+	3112	4	FSM	ENSMUSG00000064194.11	ENSMUST00000202535.4	3112	4	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_1	65.2226954364813	2602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATATTTTTAATTATG	NA	False	NA	NA	False	AATGAA	-10	NA	42827011	42841533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725
ENSMUST00000202567.2	chr5	-	1869	8	FSM	ENSMUSG00000045302.14	ENSMUST00000202567.2	1869	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	89.9026684582742	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAGCAGTCCTCTTGTC	NA	False	NA	-8	True	AATAAA	-21	NA	31117624	31112386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31113082_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31117314
ENSMUST00000202583.2	chr5	+	299	2	FSM	ENSMUSG00000106674.2	ENSMUST00000202583.2	299	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAGGCAAGAGTAAACTTG	NA	False	NA	NA	False	AATAAA	-18	NA	149565074	149571255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_149565217_149571098
ENSMUST00000202601.4	chr5	+	890	6	FSM	ENSMUSG00000029203.17	ENSMUST00000202601.4	890	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	546.724427842766	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAAATACTTTTAATTTT	NA	False	NA	20	True	AATAAA	-31	NA	65694676	65752488	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_65694890_65723331_65723426_65738728_65738812_65749218_65749319_65751762_65751892_65752217
ENSMUST00000202604.2	chr5	-	996	8	FSM	ENSMUSG00000029415.5	ENSMUST00000202604.2	996	8	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_2	27.4456791885799	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACCAAAATAAGAAGGAA	NA	False	NA	NA	False	NA	NA	NA	92457848	92449493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
ENSMUST00000202622.4	chr5	-	2726	7	FSM	ENSMUSG00000040731.14	ENSMUST00000202622.4	2726	7	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_3	647.667803224256	2687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAACCTCTAAAGAAGAAAC	9878	False	NA	NA	False	NA	NA	NA	134668344	134648574	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_134650503_134650802_134650941_134653294_134653355_134654219_134654317_134654394_134654460_134656441_134656630_134668094
ENSMUST00000202645.4	chr13	-	1406	4	FSM	ENSMUSG00000069208.10	ENSMUST00000202645.4	1406	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	20.237478982214	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGGTCATGATGTCTAT	NA	False	NA	NA	False	NA	NA	NA	74642089	74628172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_74629270_74630657_74630719_74630935_74631063_74641968
ENSMUST00000202711.2	chr5	+	848	2	FSM	ENSMUSG00000106968.2	ENSMUST00000202711.2	848	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGAGTCCCCC	NA	False	NA	NA	False	AATAAA	-4	NA	74103723	74105719	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_74103968_74105115
ENSMUST00000202758.4	chr5	-	1767	13	FSM	ENSMUSG00000029145.13	ENSMUST00000202758.4	1767	13	0	0	0	0	multi-exon	FALSE	canonical	1	12	junction_12	179.460688979199	1945	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATGACTCTGCTGCCT	NA	False	NA	-9	True	AATAAA	-15	NA	31350352	31344910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31349970_31350163
ENSMUST00000202798.2	chr7	-	1412	3	FSM	ENSMUSG00000107068.2	ENSMUST00000202798.2	1412	3	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_2	10	1741	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCACGCCTTTAATCCCAGC	9430	False	NA	-20	True	AATAAA	-28	NA	126616524	126614222	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126614642_126615371_126615455_126615614
ENSMUST00000202803.4	chr6	+	716	5	FSM	ENSMUSG00000054226.14	ENSMUST00000202803.4	716	5	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	23.847169643377	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGGGACTCATTACATTT	3409	False	NA	NA	False	TATAAA	-35	NA	85892719	85905077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789
ENSMUST00000202898.2	chr6	+	2409	15	FSM	ENSMUSG00000038759.16	ENSMUST00000202898.2	2409	15	0	0	0	0	multi-exon	FALSE	canonical	2	193	junction_5	41.0390555645796	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTTATTCCTTCTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	35154550	35182588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_35154595_35160783_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897_35180949_35182259
ENSMUST00000202913.2	chr5	-	863	7	FSM	ENSMUSG00000029128.13	ENSMUST00000202913.2	863	7	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	193.008419505471	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTTTTGGGATTTTCAT	NA	False	NA	-5	True	AATAAA	-13	NA	41865500	41782319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_41782432_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
ENSMUST00000202950.4	chr5	+	2499	14	FSM	ENSMUSG00000029141.17	ENSMUST00000202950.4	2499	14	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_11	21.8978262140197	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGTGATGATCATTCCC	NA	False	NA	11	True	AGTAAA	-21	NA	31684355	31711386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31703523_31703611_31705954_31706026_31708056_31708127_31711082
ENSMUST00000202953.2	chr5	+	367	2	FSM	ENSMUSG00000106918.4	ENSMUST00000202953.2	367	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTCTTAGAGGTAT	9470	False	NA	19	True	AATAAA	-22	NA	31756076	31779988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_31756176_31779720
ENSMUST00000202991.4	chrX	+	715	6	FSM	ENSMUSG00000016308.13	ENSMUST00000202991.4	715	6	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_4	341.941749425249	10106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGTTTCTGTCTTCCC	NA	False	NA	23	True	ATTAAA	-15	NA	36137983	36146903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_36138183_36138363_36138445_36138819_36138846_36145309_36145400_36146260_36146341_36146664
ENSMUST00000203077.3	chr6	+	1617	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	0	0	0	0	multi-exon	FALSE	canonical	3	3189	junction_3	1320.70455841276	34407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTTCACTTCATTTGT	5872	False	NA	37	True	AATATA	-25	NA	67243994	67261295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUST00000203154.3	chr7	-	542	5	FSM	ENSMUSG00000030654.10	ENSMUST00000203154.3	542	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	977.48375945588	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTAGTGTGGCTGCCGC	NA	False	NA	NA	False	GATAAA	-30	NA	117728799	117719522	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117728691
ENSMUST00000203164.3	chr6	-	2442	5	FSM	ENSMUSG00000039985.15	ENSMUST00000203164.3	2442	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	951.515238974132	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	AATAAA	-25	NA	148834647	148822554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_148824529_148827510_148827604_148830006_148830134_148832048_148832149_148834499
ENSMUST00000203206.2	chr6	+	935	1	FSM	ENSMUSG00000071337.12	ENSMUST00000203206.2	935	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCGACTAGTGGTTGAC	9697	False	NA	NA	False	ATTAAA	-15	NA	86381216	86382151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_86381200_86382200
ENSMUST00000203215.2	chr6	-	1293	2	FSM	ENSMUSG00000030061.17	ENSMUST00000203215.2	1293	2	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAATACTGGGATCC	NA	False	NA	NA	False	TTTAAA	-3	NA	97182529	97181051	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_97182309_97182493
ENSMUST00000203220.3	chr6	-	1638	11	FSM	ENSMUSG00000004980.17	ENSMUST00000203220.3	1638	11	0	0	0	0	multi-exon	FALSE	canonical	3	5712	junction_10	720.046137410652	22657	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446752	51439739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUST00000203238.2	chr6	-	381	3	FSM	ENSMUSG00000004268.12	ENSMUST00000203238.2	381	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	657.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTAAGCCGGAGAAACCTT	NA	False	NA	NA	False	NA	NA	NA	124689020	124682122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124682180_124682477_124682620_124688838
ENSMUST00000203277.2	chr6	+	873	1	FSM	ENSMUSG00000096299.4	ENSMUST00000203277.2	873	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATTCTCTCCTATTT	NA	False	NA	NA	False	AAAAAG	-23	NA	149467587	149468460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_149467600_149468500
ENSMUST00000203331.3	chr6	+	737	5	FSM	ENSMUSG00000068328.11	ENSMUST00000203331.3	737	5	0	0	0	0	multi-exon	FALSE	canonical	3	960	junction_3	76.3560737597213	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCCCAATCTCACATTAAA	578	False	NA	-29	True	AAAAAG	-14	NA	83033390	83034625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUST00000203433.3	chr6	-	670	9	FSM	ENSMUSG00000004988.10	ENSMUST00000203433.3	670	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	5.63471383479232	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTGTGGTCTTGTGACC	2519	False	NA	NA	False	ATTAAA	-16	NA	117914296	117910520	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_117910710_117910804_117910843_117911275_117911346_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912968_117913698_117913742_117914251
ENSMUST00000203436.3	chr6	+	1667	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203436.3	1667	8	0	0	0	0	multi-exon	FALSE	canonical	3	2187	junction_4	1760.87005396161	30471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTAAAGCTTTCACTTCA	5844	False	NA	32	True	AATATA	-20	NA	67243966	67261290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUST00000203449.2	chr6	-	479	2	FSM	ENSMUSG00000107479.2	ENSMUST00000203449.2	479	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	323	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGAGTTGCTGTGGCCAT	NA	False	NA	NA	False	NA	NA	NA	66442722	66431177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_66431429_66442494
ENSMUST00000203526.2	chr6	-	1216	1	FSM	ENSMUSG00000030286.7	ENSMUST00000203526.2	1216	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	113508579	113507363	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_113507400_113508600
ENSMUST00000203578.3	chr6	+	1323	5	FSM	ENSMUSG00000079426.14	ENSMUST00000203578.3	1323	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	519.345922772096	1766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTGTGCTCTGTGTGGG	NA	False	NA	38	True	ATTAAA	-30	NA	113355107	113366613	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_113355170_113358923_113359036_113361042_113361139_113362450_113362622_113365731
ENSMUST00000203680.2	chr6	-	711	4	FSM	ENSMUSG00000029814.11	ENSMUST00000203680.2	711	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	219.654273803175	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTCCT	NA	False	NA	-3	True	ATTAAA	-22	NA	49191638	49144846	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_49145040_49145403_49145453_49190200_49190262_49191230
ENSMUST00000203762.4	chr6	-	498	4	FSM	ENSMUSG00000032641.19	ENSMUST00000203762.4	498	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	13.9124245031395	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGCGCTTTGTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	134864731	134847211	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_134847407_134854179_134854298_134863853_134863900_134864592
ENSMUST00000203816.2	chr6	-	906	3	FSM	ENSMUSG00000057841.6	ENSMUST00000203816.2	906	3	0	0	0	0	multi-exon	FALSE	canonical	3	17944	junction_1	6	54836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	25	True	AATAAA	-15	NA	115785309	115782472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_115782650_115783946_115784129_115784762
ENSMUST00000203820.3	chr6	-	2090	9	FSM	ENSMUSG00000029817.12	ENSMUST00000203820.3	2090	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	190.764866720788	1305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4612	False	NA	-4	True	AATAAA	-15	NA	49240945	49220857	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229736_49230043_49240771
ENSMUST00000203878.3	chr11	+	1813	10	FSM	ENSMUSG00000020305.14	ENSMUST00000203878.3	1813	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	27.2111088426114	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTTTGTGTCTTTCCCA	4122	False	NA	NA	False	NA	NA	NA	30835415	31051333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_30835547_30948312_30948522_30978907_30979067_31005457_31005571_31006101_31006238_31008821_31009000_31011388_31011587_31031361_31031623_31035000_31035132_31051036
ENSMUST00000203915.3	chr6	+	1491	12	FSM	ENSMUSG00000068328.11	ENSMUST00000203915.4	1491	12	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_10	313.3608012109	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTCTGTTGCCTCT	5423	False	NA	5	True	ATTAAA	-15	NA	83031711	83034659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034194_83034376_83034478
ENSMUST00000203954.3	chr6	-	1703	13	FSM	ENSMUSG00000004980.17	ENSMUST00000203954.3	1703	13	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_2	3043.32879243911	3199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51446827	51438100	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
ENSMUST00000203964.2	chr2	-	1628	1	FSM	ENSMUSG00000107535.2	ENSMUST00000203964.2	1628	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	253	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGTTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	38456366	38454738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_38454700_38456400
ENSMUST00000204047.3	chr6	+	594	5	FSM	ENSMUSG00000097048.8	ENSMUST00000204047.3	594	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	30.036436206714	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGTATTTTTAAATTTA	NA	False	NA	9	True	NA	NA	NA	86504300	86541431	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_86504416_86504872_86504957_86509174_86509290_86540413_86540520_86541257
ENSMUST00000204084.3	chr6	-	409	4	FSM	ENSMUSG00000029632.8	ENSMUST00000204084.3	409	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	4235.12888430407	1530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGTGTCACTATTTAATGC	59	False	NA	-11	True	AATAAA	-15	NA	11907392	11900370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_11900591_11905200_11905262_11906018_11906077_11907322
ENSMUST00000204158.3	chr6	-	1542	11	FSM	ENSMUSG00000004980.17	ENSMUST00000204158.3	1542	11	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_2	2968.11001312283	2502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACTTGGTGTAATGCT	NA	False	NA	-24	True	AATAAA	-14	NA	51446825	51438103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUST00000204188.3	chr6	-	1518	10	FSM	ENSMUSG00000004980.17	ENSMUST00000204188.3	1518	10	0	0	0	0	multi-exon	FALSE	canonical	3	933	junction_3	2022.94680547408	10041	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446752	51439739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
ENSMUST00000204189.3	chr6	-	1777	8	FSM	ENSMUSG00000029817.12	ENSMUST00000204189.3	1777	8	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_2	153.460491492044	813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4613	False	NA	-4	True	AATAAA	-15	NA	49240944	49220857	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_49221666_49221801_49221870_49222415_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
ENSMUST00000204214.3	chr6	-	550	9	FSM	ENSMUSG00000004988.10	ENSMUST00000204214.3	550	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	4.92442890089805	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTGTGGTCTTGTGACC	2519	False	NA	NA	False	ATTAAA	-16	NA	117914296	117910520	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_117910710_117910804_117910843_117911275_117911313_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912881_117913698_117913742_117914251
ENSMUST00000204254.2	chr6	+	1147	2	FSM	ENSMUSG00000051256.11	ENSMUST00000204254.2	1147	2	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	0	4179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTAAGACTGTCCTGTG	NA	False	NA	13	True	AATAAA	-17	NA	113419570	113425170	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_113419766_113424218
ENSMUST00000204293.3	chr6	+	1336	8	FSM	ENSMUSG00000036371.7	ENSMUST00000204293.3	1336	8	0	0	0	0	multi-exon	FALSE	canonical	3	2743	junction_3	1435.93298973887	8677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5871	False	NA	19	True	NA	NA	NA	67243993	67261031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUST00000204294.3	chr6	+	717	5	FSM	ENSMUSG00000036371.7	ENSMUST00000204294.3	717	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2824.27356810561	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATGCTTAAGGATCCCAA	5932	False	NA	-14	True	AATACA	-39	NA	67244054	67260998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67248903_67258722_67258806_67260886
ENSMUST00000204343.3	chr6	+	1265	11	FSM	ENSMUSG00000068328.11	ENSMUST00000204343.4	1265	11	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	333.699805214207	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5440	False	NA	9	True	ATTAAA	-19	NA	83031728	83034663	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83031814_83031891_83032030_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUST00000204380.3	chr6	+	746	4	FSM	ENSMUSG00000057278.9	ENSMUST00000204380.3	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	1590.13130135708	4501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTTCTGCTGTTGTGGA	NA	False	NA	29	True	AATAAA	-20	NA	86348552	86355889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_86348976_86352658_86352682_86353476_86353602_86355714
ENSMUST00000204436.3	chr6	+	1687	3	FSM	ENSMUSG00000053012.18	ENSMUST00000204436.3	1687	3	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_2	14.5	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTGTGTCAGTGCT	NA	False	NA	6	True	AATAAA	-18	NA	71248660	71262303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_71248825_71259134_71259302_71260947
ENSMUST00000204465.2	chr5	+	931	4	FSM	ENSMUSG00000061461.12	ENSMUST00000204465.2	931	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	153.686549689801	2795	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3446	False	NA	13	True	ATTAAA	-14	NA	53424518	53435882	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_53424701_53425364_53425413_53434484_53434542_53435238
ENSMUST00000204530.2	chr6	+	1573	2	FSM	ENSMUSG00000094973.3	ENSMUST00000204530.2	1573	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAAAAGTAAATAGCA	NA	False	NA	NA	False	ATTAAA	-41	NA	136304536	136306981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_136304647_136305518
ENSMUST00000204615.2	chr6	+	746	1	FSM	ENSMUSG00000033706.14	ENSMUST00000204615.2	746	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-2	NA	85409054	85409800	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_85409100_85409800
ENSMUST00000204653.3	chr6	-	2175	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	0	0	0	0	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	26234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAACAAAAA	NA	False	NA	NA	False	AGTAAA	-12	NA	87828088	87819596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
ENSMUST00000204671.3	chr6	-	744	5	FSM	ENSMUSG00000030122.13	ENSMUST00000204671.3	744	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	276.631975736718	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGTTGGGGCCAAGCCC	8034	False	NA	-44	True	NA	NA	NA	124897066	124890726	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124897001
ENSMUST00000204696.3	chr6	+	734	3	FSM	ENSMUSG00000029920.10	ENSMUST00000204696.3	734	3	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	64	668	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAGCAGAGCATTATGGA	1954	False	NA	5	True	AATAAA	-15	NA	65019819	65021187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_65019946_65020189_65020430_65020819
ENSMUST00000204701.3	chr2	-	1495	6	FSM	ENSMUSG00000026753.6	ENSMUST00000204701.3	1495	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	180.985524283021	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTTAGTTAAAAACTGC	NA	False	NA	5	True	AATAAA	-36	NA	39116332	39086788	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39094987_39100969_39101066_39116178
ENSMUST00000204765.3	chr6	+	1738	12	FSM	ENSMUSG00000002871.15	ENSMUST00000204765.3	1738	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	17.59319928714	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGTGTGAGCTGATGCCT	NA	False	NA	12	True	AATAAA	-14	NA	88879314	88889213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_88879513_88882930_88883061_88884922_88885055_88885165_88885299_88886271_88886359_88886489_88886563_88886662_88886743_88887132_88887244_88887322_88887384_88887529_88887633_88887778_88887860_88888664
ENSMUST00000204768.2	chr6	+	375	4	FSM	ENSMUSG00000057278.9	ENSMUST00000204768.2	375	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1594.61865869764	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCATATGGAACTTTTT	NA	False	NA	-20	True	NA	NA	NA	86348585	86355840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_86348687_86352658_86352682_86353476_86353602_86355714
ENSMUST00000204778.3	chr6	-	3382	13	FSM	ENSMUSG00000059182.9	ENSMUST00000204778.3	3382	13	0	0	0	0	multi-exon	FALSE	canonical	3	457	junction_9	27.4919180043073	2240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTATGATGCTAATAATT	828	False	NA	-5	True	AATAAA	-18	NA	51989529	51834401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_51836551_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980736_51989314
ENSMUST00000204810.2	chr6	+	397	3	FSM	ENSMUSG00000036371.7	ENSMUST00000204810.2	397	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	5.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGACCACCCCGTGAAAGA	9645	False	NA	-12	True	NA	NA	NA	67215159	67248256	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_67215355_67224347_67224475_67248181
ENSMUST00000204885.2	chr6	-	1554	2	FSM	ENSMUSG00000004980.17	ENSMUST00000204885.2	1554	2	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_1	0	1125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAATACTTTTGTATC	NA	False	NA	-45	True	AATACA	-9	NA	51440164	51438124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_51438414_51438899
ENSMUST00000204890.3	chr6	-	1614	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204890.3	1614	5	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_3	4411.10218652889	17950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGACAGTTTGGACTT	NA	False	NA	-9	True	ATTAAA	-21	NA	87828012	87820063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822655_87822776_87827885
ENSMUST00000204895.3	chr6	+	1826	10	FSM	ENSMUSG00000068328.11	ENSMUST00000204895.3	1826	10	0	0	0	0	multi-exon	TRUE	canonical	3	960	junction_8	79.6814646104672	716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTGCCTCTTTGGGTTT	5338	False	NA	13	True	ATTAAA	-23	NA	83031626	83034667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83032030_83032109_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
ENSMUST00000204950.3	chr6	-	586	9	FSM	ENSMUSG00000004988.10	ENSMUST00000204950.3	586	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4.98591766879478	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTGTGGTCTTGTGACC	2519	False	NA	NA	False	ATTAAA	-16	NA	117914296	117910520	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_117910710_117910804_117910843_117911275_117911346_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912884_117913698_117913742_117914251
ENSMUST00000204965.3	chr5	-	4751	25	FSM	ENSMUSG00000029191.17	ENSMUST00000204965.3	4751	25	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_12	80.615847887097	645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTACTGAGTCTTGCCCCT	NA	False	NA	-4	True	AATAAA	-19	NA	65493013	65419194	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436167_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
ENSMUST00000204978.3	chr6	-	610	4	FSM	ENSMUSG00000029632.8	ENSMUST00000204978.3	610	4	0	0	0	0	multi-exon	FALSE	canonical	3	8511	junction_2	453.262494465281	46396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCTTGAATTTCTCTTA	-31	True	NA	69	True	ACTAAA	-17	NA	11907482	11900290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_11900591_11905200_11905262_11906018_11906108_11907322
ENSMUST00000205002.3	chr6	-	1445	11	FSM	ENSMUSG00000000399.11	ENSMUST00000205002.3	1445	11	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_7	83.3223259396904	13772	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTGATCTGAATTCACTC	NA	False	NA	NA	False	TATAAA	-19	NA	126826088	126798683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_126799153_126801898_126801966_126804502_126804599_126809434_126809512_126811391_126811460_126813181_126813285_126817460_126817603_126819083_126819176_126821270_126821369_126821753_126821925_126826026
ENSMUST00000205091.3	chr6	+	1166	7	FSM	ENSMUSG00000036371.7	ENSMUST00000205091.3	1166	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	2347.58275797799	2586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5872	False	NA	19	True	NA	NA	NA	67243994	67261031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_67244394_67248181_67248305_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUST00000205106.3	chr6	+	1288	7	FSM	ENSMUSG00000036371.7	ENSMUST00000205106.3	1288	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2366.15668801164	7893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACTGTCATTCATACCA	5866	False	NA	38	True	NA	NA	NA	67243988	67261050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249847_67249923_67254744_67254923_67258631_67258806_67260886
ENSMUST00000205118.3	chr6	+	600	3	FSM	ENSMUSG00000029920.10	ENSMUST00000205118.3	600	3	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	73	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTTTGGAAATCTCCA	1785	False	NA	-67	True	AATAAA	-25	NA	65019650	65021115	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_65019715_65020189_65020430_65020819
ENSMUST00000205188.2	chr6	+	1414	1	FSM	ENSMUSG00000029787.11	ENSMUST00000205188.2	1414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGATTGCT	NA	False	NA	NA	False	AGTAAA	-26	NA	56691883	56693297	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_56691900_56693300
ENSMUST00000205287.2	chr7	+	1375	6	FSM	ENSMUSG00000035585.17	ENSMUST00000205287.2	1375	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_5	529.055913869224	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTGTTCTTTATTTT	2173	False	NA	NA	False	NA	NA	NA	3696761	3703886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3698711_3698833_3703526
ENSMUST00000205335.2	chr6	-	3387	8	FSM	ENSMUSG00000053907.11	ENSMUST00000205335.2	3387	8	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_3	40.6724095420862	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTGTCTATTACTTGT	NA	False	NA	-11	True	AATAAA	-17	NA	72416539	72409781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ENSMUST00000205338.2	chr7	-	2071	5	FSM	ENSMUSG00000056383.11	ENSMUST00000205338.2	2071	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	16.2845785944863	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	41042803	41023213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_41024799_41025914_41025973_41026169_41026297_41037531_41037680_41042650
ENSMUST00000205352.2	chr7	-	2145	1	FSM	ENSMUSG00000044702.14	ENSMUST00000205352.2	2145	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	64	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	121732208	121730063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_121730100_121732200
ENSMUST00000205367.2	chr7	+	827	1	FSM	ENSMUSG00000045598.11	ENSMUST00000205367.2	827	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	125	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAGAAAAAAAAAAA	8341	False	NA	NA	False	NA	NA	NA	126832465	126833292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126832500_126833300
ENSMUST00000205407.2	chr7	-	1412	11	FSM	ENSMUSG00000030491.17	ENSMUST00000205407.2	1412	11	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_10	140.166365437647	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTCTCTTAAAATATTT	NA	False	NA	-10	True	AATAAA	-36	NA	35237118	35193033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35236938
ENSMUST00000205463.2	chr19	-	239	3	FSM	ENSMUSG00000010095.14	ENSMUST00000205463.2	239	3	0	0	0	0	multi-exon	FALSE	canonical	1	46	junction_1	1282	1876	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGTGGGAAAGCTGATGG	NA	False	NA	NA	False	NA	NA	NA	8690720	8687097	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_8687148_8690093_8690268_8690705
ENSMUST00000205481.2	chr7	+	885	5	FSM	ENSMUSG00000025133.10	ENSMUST00000205481.2	885	5	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_4	26.0708170182678	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTCAGTATTGACATTT	990	False	NA	NA	False	NA	NA	NA	97130219	97145190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863
ENSMUST00000205490.2	chr7	-	1317	5	FSM	ENSMUSG00000090862.4	ENSMUST00000205490.2	1317	5	0	0	0	0	multi-exon	FALSE	canonical	3	8384	junction_1	1180.01069910404	7884	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTGTTTTGTGGTTCTT	NA	False	NA	-5	True	AATAAA	-15	NA	115933368	115930744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_115931715_115932163_115932334_115932930_115933010_115933134_115933184_115933319
ENSMUST00000205548.2	chr7	-	2363	3	FSM	ENSMUSG00000090862.4	ENSMUST00000205548.2	2363	3	0	0	0	0	multi-exon	FALSE	canonical	3	9102	junction_2	1081.5	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933370	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_115933010_115933134_115933184_115933319
ENSMUST00000205570.2	chr7	-	713	1	FSM	ENSMUSG00000000486.14	ENSMUST00000205570.2	713	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	121	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCGTCTGTCCCTTGAGTG	NA	False	NA	NA	False	AATAAA	-30	NA	126832302	126831589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126831600_126832300
ENSMUST00000205658.2	chr7	+	995	4	FSM	ENSMUSG00000063439.8	ENSMUST00000205658.2	995	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	1.69967317119759	759	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGTGCCTCCTTGTATC	NA	False	NA	8	True	AATAAA	-19	NA	25380204	25385983	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_25380404_25380807_25380900_25382715_25382842_25385405
ENSMUST00000205681.2	chr6	+	752	1	FSM	ENSMUSG00000034744.14	ENSMUST00000205681.2	752	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83773223	83773975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_83773200_83774000
ENSMUST00000205701.2	chr7	+	3437	5	FSM	ENSMUSG00000078779.5	ENSMUST00000205701.2	3437	5	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_4	40.2639727299729	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAATACACAAGCCTA	408	False	NA	NA	False	AAGAAA	-4	NA	27538031	27555863	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27538135_27542259_27542313_27543709_27543837_27545828_27545928_27552808
ENSMUST00000205748.2	chr7	+	1492	5	FSM	ENSMUSG00000074887.5	ENSMUST00000205748.2	1492	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	99.780697031039	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTCAGCTCAAAGTCTTC	9998	False	NA	NA	False	NA	NA	NA	42863462	42876266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_42863572_42870265_42870330_42872998_42873126_42873324_42873386_42875135
ENSMUST00000205750.2	chr7	+	1452	1	FSM	ENSMUSG00000046591.11	ENSMUST00000205750.2	1452	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	166	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	1950	False	NA	NA	False	NA	NA	NA	79309969	79311421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_79310000_79311400
ENSMUST00000205802.2	chr6	-	1854	1	FSM	ENSMUSG00000034203.9	ENSMUST00000205802.2	1854	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91450431	91448577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_91448600_91450400
ENSMUST00000205825.2	chr19	+	495	9	FSM	ENSMUSG00000108414.2	ENSMUST00000205825.2	495	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	343.013825340904	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTTACCACATTGTTAAC	NA	False	NA	31	True	AATAAA	-39	NA	8701510	8703709	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8701554_8701740_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUST00000205863.2	chr7	-	1516	1	FSM	ENSMUSG00000038930.12	ENSMUST00000205863.2	1516	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAAAAAAGATAT	NA	False	NA	NA	False	NA	NA	NA	79973882	79972366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_79972400_79973900
ENSMUST00000205871.2	chr7	-	986	4	FSM	ENSMUSG00000003380.12	ENSMUST00000205871.2	986	4	0	0	0	0	multi-exon	FALSE	canonical	3	706	junction_2	27.3292679903595	3881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGGCCAATACTTTCCT	-3	True	NA	-14	True	AATAAA	-15	NA	24672063	24669185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_24669435_24669511_24669614_24671185_24671284_24671526
ENSMUST00000205906.2	chr7	-	1150	5	FSM	ENSMUSG00000090862.4	ENSMUST00000205906.2	1150	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4265.5784118335	1517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933401	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_115930819_115931613_115931715_115932163_115933010_115933134_115933184_115933319
ENSMUST00000205960.2	chr7	+	1992	10	FSM	ENSMUSG00000030523.19	ENSMUST00000205960.2	1992	10	0	0	0	0	multi-exon	FALSE	canonical	3	724	junction_5	65.6911967719673	1803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGACTGAGTTTTCAGAC	NA	False	NA	26	True	ATTAAA	-23	NA	63835128	63861175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
ENSMUST00000205966.2	chr7	+	682	5	FSM	ENSMUSG00000061286.8	ENSMUST00000205966.2	682	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	557.079606070802	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCCACCACCAAGGGGCT	NA	False	NA	NA	False	NA	NA	NA	25358636	25365731	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_25358809_25362561_25362676_25363672_25363874_25364845_25364987_25365677
ENSMUST00000206026.2	chr7	-	2906	7	FSM	ENSMUSG00000042502.11	ENSMUST00000206026.2	2906	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	225.562999329825	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTGAGTCTGCGCCCAG	5520	False	NA	28	True	NA	NA	NA	126795110	126791167	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794640_126795086
ENSMUST00000206039.2	chr7	+	2194	4	FSM	ENSMUSG00000048897.16	ENSMUST00000206039.2	2194	4	0	0	0	0	multi-exon	TRUE	canonical	3	96	junction_1	115.519118186847	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACACGTTGAGTGCTGT	NA	False	NA	1	True	AATAAA	-9	NA	79676134	79736594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_79676232_79730796_79732289_79735698_79735891_79736181
ENSMUST00000206071.2	chr7	+	1014	3	FSM	ENSMUSG00000030801.11	ENSMUST00000206071.2	1014	3	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_2	0.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACAAAGTATGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	127511687	127515262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_127511915_127514399_127514475_127514550
ENSMUST00000206084.2	chr7	-	772	7	FSM	ENSMUSG00000030538.16	ENSMUST00000206084.2	772	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	282.60317683203	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2299	False	NA	-12	True	AATAAA	-15	NA	79882313	79876906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878282_79880063_79880173_79882091_79882127_79882257
ENSMUST00000206118.2	chr7	+	1656	1	FSM	ENSMUSG00000030822.16	ENSMUST00000206118.2	1656	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	127070620	127072276	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_127070600_127072300
ENSMUST00000206124.2	chr7	-	1709	7	FSM	ENSMUSG00000030800.11	ENSMUST00000206124.2	1709	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	11.3932241071417	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTACACATATTTACAG	NA	False	NA	NA	False	AATAAA	-14	NA	127529276	127524887	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_127525813_127525916_127526084_127526170_127526443_127526980_127527144_127528728_127528747_127528969_127529086_127529228
ENSMUST00000206135.2	chr19	+	744	8	FSM	ENSMUSG00000108414.2	ENSMUST00000206135.2	744	8	0	0	0	0	multi-exon	FALSE	canonical	3	781	junction_1	116.047316176794	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8701521	8703807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8701554_8701766_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUST00000206194.2	chr7	+	532	3	FSM	ENSMUSG00000033429.11	ENSMUST00000206194.2	532	3	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_2	103	1803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTATTTGTTATTTGA	NA	False	NA	21	True	ATTAAA	-22	NA	64042522	64061869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_64042592_64049916_64050093_64061582
ENSMUST00000206196.2	chr7	+	551	5	FSM	ENSMUSG00000004610.5	ENSMUST00000206196.2	551	5	0	0	0	0	multi-exon	FALSE	canonical	3	1745	junction_1	127.987059892788	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGTGGTGACTGCTGACC	1955	False	NA	NA	False	NA	NA	NA	43093553	43105997	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941_43104005_43105902
ENSMUST00000206405.2	chr7	+	1428	4	FSM	ENSMUSG00000074887.5	ENSMUST00000206405.2	1428	4	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_3	24.5356882927706	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTCAGCTCAAAGTCTTC	9998	False	NA	NA	False	NA	NA	NA	42863462	42876266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135
ENSMUST00000206439.2	chr7	-	1690	1	FSM	ENSMUSG00000061479.16	ENSMUST00000206439.2	1690	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	265	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	26895578	26893888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_26893900_26895600
ENSMUST00000206462.2	chr19	+	855	5	FSM	ENSMUSG00000108414.2	ENSMUST00000206462.2	855	5	0	0	0	0	multi-exon	FALSE	canonical	3	931	junction_1	85.4469864886995	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8702026	8703807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8702086_8702377_8702888_8703145_8703191_8703430_8703467_8703602
ENSMUST00000206477.2	chr7	-	453	2	FSM	ENSMUSG00000030697.8	ENSMUST00000206477.2	453	2	0	0	0	0	multi-exon	FALSE	canonical	3	2598	junction_1	0	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGGCTGCACCCCAAGAGA	NA	False	NA	NA	False	NA	NA	NA	126386511	126385400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126385734_126386391
ENSMUST00000206517.2	chr7	+	905	6	FSM	ENSMUSG00000078681.11	ENSMUST00000206517.2	905	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	235.550079600921	790	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGACAACCCAGAACTTT	NA	False	NA	17	True	AATAAA	-17	NA	65343224	65351650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_65343318_65343598_65343692_65344917_65345076_65347443_65347619_65348839_65348916_65351340
ENSMUST00000206570.2	chr7	-	1400	8	FSM	ENSMUSG00000030697.8	ENSMUST00000206570.2	1400	8	0	0	0	0	multi-exon	FALSE	canonical	3	2424	junction_1	142.291307979548	8590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTAGGTTCTGTCAGGTT	5226	False	NA	NA	False	AATAAA	-13	NA	126391512	126385039	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232
ENSMUST00000206574.2	chr7	+	1286	11	FSM	ENSMUSG00000030763.8	ENSMUST00000206574.2	1286	11	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_5	37.2322440903043	2406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTGCTACATCTGTACA	6898	False	NA	22	True	AATAAA	-22	NA	122977278	123029572	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_122977479_122999660_122999753_123000666_123000789_123002057_123002135_123003645_123003712_123009950_123010050_123017440_123017562_123020760_123020863_123021929_123022022_123027316_123027415_123029355
ENSMUST00000206575.2	chr7	+	1157	6	FSM	ENSMUSG00000075701.11	ENSMUST00000206575.2	1157	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	154.225808475754	2430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACAGTCTCTGGTTTTTC	NA	False	NA	5	True	AGTAAA	-14	NA	65729425	65739151	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_65729538_65730079_65730215_65733147_65733255_65736694_65736785_65736940_65737017_65738514
ENSMUST00000206598.2	chr19	-	1393	8	FSM	ENSMUSG00000010095.14	ENSMUST00000206598.2	1393	8	0	0	0	0	multi-exon	FALSE	canonical	3	2940	junction_7	103.964868477534	4159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCACCCCTGCCTCATGA	NA	False	NA	12	True	AATAAA	-2	NA	8690349	8684950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093
ENSMUST00000206603.2	chr7	-	1601	9	FSM	ENSMUSG00000036427.6	ENSMUST00000206603.2	1601	9	0	0	0	0	multi-exon	FALSE	canonical	3	1600	junction_6	111.622060431619	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAGAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	33929688	33914633	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
ENSMUST00000206618.2	chr7	-	1016	1	FSM	ENSMUSG00000030538.16	ENSMUST00000206618.2	1016	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	63	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGCTAAGAAT	2283	False	NA	NA	False	NA	NA	NA	79882329	79881313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_79881300_79882300
ENSMUST00000206692.2	chr6	-	1400	9	FSM	ENSMUSG00000053907.11	ENSMUST00000206692.2	1400	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	259.956697115116	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATACTTTCGCCATGA	NA	False	NA	NA	False	AATAAA	-25	NA	72416539	72411527	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_72411723_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
ENSMUST00000206772.2	chr7	+	653	7	FSM	ENSMUSG00000030672.13	ENSMUST00000206772.2	653	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	719.114598346853	3253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	251	False	NA	32	True	AATAAA	-24	NA	126808070	126813460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126808124_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
ENSMUST00000206786.2	chr19	+	729	2	FSM	ENSMUSG00000108414.2	ENSMUST00000206786.2	729	2	0	0	0	0	multi-exon	FALSE	canonical	3	1169	junction_1	0	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	6	True	NA	26	True	AATAAA	-15	NA	8702838	8703807	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8703191_8703430
ENSMUST00000206793.2	chr7	-	1215	11	FSM	ENSMUSG00000030742.8	ENSMUST00000206793.2	1215	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	13.9071923837991	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTTGTCTTCTTTTTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	125968713	125962995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_125963214_125963367_125963473_125963569_125963633_125963730_125963794_125967047_125967143_125967217_125967279_125967470_125967536_125967666_125967755_125967973_125968009_125968113_125968142_125968319
ENSMUST00000206847.2	chr7	+	662	3	FSM	ENSMUSG00000054169.8	ENSMUST00000206847.2	662	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	14	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGGTTGGCTCCTTCGAC	1129	False	NA	NA	False	AATAAA	-21	NA	24476652	24484077	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_24476765_24480294_24480655_24483887
ENSMUST00000206868.2	chr7	-	473	4	FSM	ENSMUSG00000003380.12	ENSMUST00000206868.2	473	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	348.876291350769	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGGCCAATACTTTCCT	5223	False	NA	-14	True	AATAAA	-15	NA	24671451	24669185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_24669435_24669511_24669614_24671185_24671284_24671427
ENSMUST00000206875.2	chr7	+	436	2	FSM	ENSMUSG00000063065.14	ENSMUST00000206875.2	436	2	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCCCAGCAAAGTAACTTT	5275	False	NA	NA	False	NA	NA	NA	126358831	126360179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_126358991_126359902
ENSMUST00000206882.2	chr7	+	391	2	FSM	ENSMUSG00000033429.11	ENSMUST00000206882.2	391	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTATTTGTTATTTGA	NA	False	NA	21	True	ATTAAA	-22	NA	64042487	64061869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_64042592_64061582
ENSMUST00000206947.2	chr6	+	618	4	FSM	ENSMUSG00000034192.6	ENSMUST00000206947.2	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	1484	junction_1	387.955610290089	20113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTACTTTTTTTTTTAATG	NA	False	NA	42	True	ATTAAA	-18	NA	91493029	91499602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_91493061_91494029_91494141_91496530_91496627_91499222
ENSMUST00000206963.2	chr7	-	653	5	FSM	ENSMUSG00000090862.4	ENSMUST00000206963.2	653	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4507.63410782197	16317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933365	115930746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933134
ENSMUST00000207082.2	chr7	-	1241	9	FSM	ENSMUSG00000001794.14	ENSMUST00000207082.2	1241	9	0	0	0	0	multi-exon	FALSE	canonical	3	1474	junction_7	82.1492544092763	1441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGGTTATTTTTTTAAT	NA	False	NA	-2	True	NA	NA	NA	29892397	29886360	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291
ENSMUST00000207159.2	chr7	-	466	4	FSM	ENSMUSG00000030615.13	ENSMUST00000207159.2	466	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	346.691345275432	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATCTTGTCTGCAAC	1772	False	NA	NA	False	AATAAA	-7	NA	90106310	90099919	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_90100144_90100750_90100866_90104631_90104728_90106279
ENSMUST00000207161.2	chr7	+	1437	2	FSM	ENSMUSG00000100153.3	ENSMUST00000207161.2	1437	2	0	0	0	0	multi-exon	FALSE	canonical	3	469	junction_1	0	674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACG	NA	False	NA	NA	False	NA	NA	NA	119339148	119341449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_119340294_119341157
ENSMUST00000207168.2	chr7	-	2213	1	FSM	ENSMUSG00000010755.18	ENSMUST00000207168.2	2213	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAAAACGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	143153817	143151604	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_143151600_143153800
ENSMUST00000207263.2	chr7	-	835	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207263.2	835	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	291.92945304569	5039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCAGTGAAGTAAACAGT	9288	False	NA	-45	True	NA	NA	NA	30428934	30427158	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428167_30428626_30428697_30428768
ENSMUST00000207278.2	chr7	-	2287	16	FSM	ENSMUSG00000002968.10	ENSMUST00000207278.2	2287	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_15	290.277384582402	194	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGCCCGGCTCCCGTG	6948	False	NA	-13	True	AATAAA	-10	NA	44541843	44528814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44528939_44529350_44529529_44529675_44529895_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541568
ENSMUST00000207296.2	chr7	-	875	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207296.2	875	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	290.731118618791	6053	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTATGTCCATCTCT	9275	False	NA	-14	True	AGTAAA	-16	NA	30428947	30427127	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30427329_30427411_30427555_30427629_30427715_30427856_30427994_30428081_30428142_30428626_30428697_30428768
ENSMUST00000207309.2	chr7	-	835	4	FSM	ENSMUSG00000062797.15	ENSMUST00000207309.2	835	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	457.818741425032	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGTAACCTTTTCG	NA	False	NA	14	True	AATAAA	-33	NA	89590334	89567895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_89568216_89569280_89569400_89584934_89585173_89590176
ENSMUST00000207389.2	chr8	+	363	4	FSM	ENSMUSG00000087687.4	ENSMUST00000207389.2	363	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	322.072800603977	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTAGTGCCAAGTGTT	5638	False	NA	10	True	NA	NA	NA	3671601	3673372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_3671696_3672341_3672429_3672592_3672626_3673223
ENSMUST00000207416.2	chr7	-	657	7	FSM	ENSMUSG00000038502.18	ENSMUST00000207416.2	657	7	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_1	156.981598355419	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTCCCTCCCTGCTTG	NA	False	NA	-8	True	AATAAA	-15	NA	44514364	44512490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44512619_44512802_44512869_44512958_44513157_44513806_44513912_44514035_44514094_44514185_44514260_44514336
ENSMUST00000207419.2	chr7	+	675	1	FSM	ENSMUSG00000063179.14	ENSMUST00000207419.2	675	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	292	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGGTTA	NA	False	NA	NA	False	AAGAAA	-10	NA	130972884	130973559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_130972900_130973600
ENSMUST00000207525.2	chr7	-	897	1	FSM	ENSMUSG00000002985.17	ENSMUST00000207525.2	897	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGGAGCAAGGTCGCCAGC	NA	False	NA	NA	False	NA	NA	NA	19431556	19430659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19430700_19431600
ENSMUST00000207555.2	chr7	+	1641	7	FSM	ENSMUSG00000003184.16	ENSMUST00000207555.2	1641	7	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_1	17.7458915433028	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGCGTCTAGGCTGGTGG	NA	False	NA	16	True	AATAAA	-31	NA	44647112	44651825	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44650447_44651096_44651213_44651587
ENSMUST00000207563.2	chr7	-	3640	31	FSM	ENSMUSG00000003435.10	ENSMUST00000207563.2	3640	31	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_28	195.98717645125	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACGAAGAGTTTTCTT	NA	False	NA	-8	True	AATAAA	-21	NA	28038171	28014315	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029442_28029455_28030004_28030071_28030794_28030955_28037351_28037449_28037776_28037861_28038119
ENSMUST00000207628.2	chr7	-	576	3	FSM	ENSMUSG00000046792.9	ENSMUST00000207628.2	576	3	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	37	1075	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAACTCGAAGTTCATGC	9600	False	NA	-10	True	AATAAA	-16	NA	6158996	6145284	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_6145619_6146060_6146150_6158843
ENSMUST00000207659.2	chr7	-	945	8	FSM	ENSMUSG00000109324.3	ENSMUST00000207659.2	945	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1257.72160379516	1459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTCTCGCCCTGGGGCT	NA	False	NA	-30	True	AATAAA	-17	NA	44635780	44626181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44626408_44626927_44627050_44627550_44627699_44628896_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44635706
ENSMUST00000207683.2	chr7	-	647	7	FSM	ENSMUSG00000053565.11	ENSMUST00000207683.2	647	7	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_6	1263.25735259641	2036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTCTCTTGCCTGT	NA	False	NA	-5	True	AATAAA	-16	NA	28681212	28670797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28681098
ENSMUST00000207684.2	chr8	+	1349	2	FSM	ENSMUSG00000109523.2	ENSMUST00000207684.2	1349	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGCGTTGGCGCAGGTGTG	5118	False	NA	NA	False	AAAAAG	-33	NA	70782466	70784237	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70782927_70783348
ENSMUST00000207711.2	chr7	+	1320	7	FSM	ENSMUSG00000070837.7	ENSMUST00000207711.2	1320	7	0	0	0	0	multi-exon	FALSE	canonical	2	56	junction_6	160.229696234985	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2914	False	NA	20	True	ATTAAA	-21	NA	6998501	7006090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_6998834_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
ENSMUST00000207730.2	chr7	+	435	2	FSM	ENSMUSG00000002043.18	ENSMUST00000207730.2	435	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGGGTCAAGGCGCTCA	190	False	NA	NA	False	NA	NA	NA	19242319	19242841	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_19242354_19242440
ENSMUST00000207747.2	chr7	-	669	3	FSM	ENSMUSG00000036835.8	ENSMUST00000207747.2	669	3	0	0	0	0	multi-exon	FALSE	canonical	3	780	junction_1	38	2382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTTCTTGGGATCTTTC	1444	False	NA	-3	True	AATAAA	-19	NA	30262512	30261287	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30261560_30261748_30261854_30262220
ENSMUST00000207776.2	chr7	+	1735	1	FSM	ENSMUSG00000045752.14	ENSMUST00000207776.2	1735	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	331	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623089	142624824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_142623100_142624800
ENSMUST00000207779.2	chr7	-	774	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207779.2	774	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	293.234831946457	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTATGTCCATCTCTCT	9290	False	NA	-12	True	AGTAAA	-18	NA	30428932	30427125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427923_30427994_30428081_30428142_30428626_30428697_30428768
ENSMUST00000207799.2	chr7	+	1504	1	FSM	ENSMUSG00000040466.17	ENSMUST00000207799.2	1504	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	27147485	27148989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_27147500_27149000
ENSMUST00000207849.2	chr7	-	2128	6	FSM	ENSMUSG00000070436.13	ENSMUST00000207849.2	2128	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	741.154936568596	2872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATATCATTCTTTCTAAG	NA	False	NA	84	True	ATTAAA	-11	NA	99002321	98994601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99001030_99001075_99002259
ENSMUST00000207895.2	chr7	+	1338	6	FSM	ENSMUSG00000039745.9	ENSMUST00000207895.2	1338	6	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	54.5688555863141	1503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9918	False	NA	-5	True	NA	NA	NA	49408900	49423723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_49409060_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
ENSMUST00000207957.2	chr7	-	880	2	FSM	ENSMUSG00000046792.9	ENSMUST00000207957.2	880	2	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	0	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTCCACCTGTACACTG	9671	False	NA	-77	True	NA	NA	NA	6158925	6145351	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_6146150_6158843
ENSMUST00000207992.2	chr7	+	687	4	FSM	ENSMUSG00000061119.8	ENSMUST00000207992.2	687	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	46.0506967012082	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTAATGTCTTCTATCT	NA	False	NA	NA	False	AATAAA	-24	NA	92524502	92555794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_92524709_92550366_92550508_92554318_92554421_92555556
ENSMUST00000208043.2	chr17	-	2987	11	FSM	ENSMUSG00000025728.17	ENSMUST00000208043.2	2987	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	84.5955081549842	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCAGCTTGGGTGTCCTG	NA	False	NA	-5	True	AATAAA	-18	NA	26161797	26145400	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26161743
ENSMUST00000208044.2	chr7	-	1438	7	FSM	ENSMUSG00000030739.19	ENSMUST00000208044.2	1438	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_6	22.8837642591132	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGGCTGCGTTTCTAA	NA	False	NA	-3	True	AATAAA	-15	NA	44263549	44255228	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263374
ENSMUST00000208046.2	chr7	+	334	2	FSM	ENSMUSG00000109118.2	ENSMUST00000208046.2	334	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGTATACCTGAGTCTGG	NA	False	NA	NA	False	AATAAA	-15	NA	46658292	46658756	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_46658342_46658471
ENSMUST00000208048.2	chr7	+	983	3	FSM	ENSMUSG00000039745.9	ENSMUST00000208048.2	983	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	102	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCATTGTCTCGCTCTTAC	9880	False	NA	NA	False	AATAAA	-14	NA	49408862	49412507	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_49408894_49409289_49409542_49411807
ENSMUST00000208049.2	chr7	+	1401	7	FSM	ENSMUSG00000070837.7	ENSMUST00000208049.2	1401	7	0	0	0	0	multi-exon	FALSE	canonical	2	56	junction_6	128.262751152988	629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2711	False	NA	20	True	ATTAAA	-21	NA	6998298	7006090	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_6998712_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
ENSMUST00000208054.2	chr7	-	383	5	FSM	ENSMUSG00000061787.16	ENSMUST00000208054.2	383	5	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_3	5279.89450652189	2579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTGTCTGTATTGTTCT	NA	False	NA	-12	True	AATAAA	-10	NA	80994975	80992482	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994686_80994757_80994949
ENSMUST00000208068.2	chr7	-	2151	21	FSM	ENSMUSG00000061028.8	ENSMUST00000208068.2	2151	21	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	53.6276747584678	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCACATGCTGTCCCC	NA	False	NA	-9	True	AATAAA	-21	NA	19338386	19314967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318456_19318704_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
ENSMUST00000208164.2	chr7	+	525	2	FSM	ENSMUSG00000108866.2	ENSMUST00000208164.2	525	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTAGCCACCCTTATGGT	4876	False	NA	NA	False	NA	NA	NA	100324294	100326967	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_100324371_100326518
ENSMUST00000208190.2	chr7	-	2259	15	FSM	ENSMUSG00000059119.10	ENSMUST00000208190.2	2259	15	0	0	0	0	multi-exon	FALSE	canonical	3	471	junction_1	167.71624785905	2645	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATTGGTTTTTTTGTT	NA	False	NA	-5	True	ATTAAA	-16	NA	143102843	143067319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
ENSMUST00000208214.2	chr9	+	2398	24	FSM	ENSMUSG00000032604.17	ENSMUST00000208214.2	2398	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	114.995898669366	1258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCTCTCTGTTGTCTGCCT	NA	False	NA	18	True	AATAAA	-21	NA	108385257	108393140	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_108385399_108385581_108385681_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
ENSMUST00000208217.2	chr7	-	1178	9	FSM	ENSMUSG00000048065.9	ENSMUST00000208217.2	1178	9	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_8	13.026415470113	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACAATGTGTGGATAT	NA	False	NA	-5	True	AATAAA	-19	NA	107357203	107349171	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_107349604_107350373_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107357164
ENSMUST00000208357.2	chr7	-	806	4	FSM	ENSMUSG00000062797.15	ENSMUST00000208357.2	806	4	0	0	0	0	multi-exon	FALSE	canonical	3	430	junction_3	356.664485974642	5514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTATTTGAAATACCATTAC	NA	False	NA	-2	True	AATAAA	-17	NA	89590407	89567911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89590176
ENSMUST00000208381.2	chr8	-	1937	3	FSM	ENSMUSG00000022322.9	ENSMUST00000208381.2	1937	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	149	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATAGGCACTGATATACT	NA	False	NA	NA	False	TATAAA	-21	NA	4829567	4813467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_4815090_4818143_4818312_4829420
ENSMUST00000208441.2	chr7	+	485	4	FSM	ENSMUSG00000074218.4	ENSMUST00000208441.2	485	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	502.814964861716	7528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTGTCTACGCAGTGGA	5724	False	NA	72	True	NA	NA	NA	29883618	29885503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_29883765_29884509_29884597_29884699_29884785_29885336
ENSMUST00000208477.2	chr7	-	1553	6	FSM	ENSMUSG00000035227.8	ENSMUST00000208477.2	1553	6	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_5	975.780180163545	695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGAGTCTTGAAAGAAGG	NA	False	NA	-2	True	AATAAA	-19	NA	99508066	99488109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99498363_99498460_99507970
ENSMUST00000208532.2	chr7	-	489	6	FSM	ENSMUSG00000030744.14	ENSMUST00000208532.2	489	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	5856.28204238833	5877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGACTGGATTGTGTCC	8437	False	NA	-34	True	AATAAA	-36	NA	99132843	99128088	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_99128159_99128480_99128535_99130903_99130999_99131467_99131562_99131776_99131908_99132798
ENSMUST00000208689.2	chr7	-	397	1	FSM	ENSMUSG00000109509.2	ENSMUST00000208689.2	397	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7978	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATTTTGGCTGATTTTT	9635	False	NA	-41	True	AAGAAA	-4	NA	30184522	30184125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30184100_30184500
ENSMUST00000208698.2	chr7	+	551	3	FSM	ENSMUSG00000043831.13	ENSMUST00000208698.2	551	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	14	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTGTGGTTTATCTAAA	NA	False	NA	NA	False	ATTAAA	-31	NA	66872361	66874375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_66872378_66873356_66873640_66874123
ENSMUST00000208737.2	chr11	+	1843	14	FSM	ENSMUSG00000025156.18	ENSMUST00000208737.2	1843	14	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_6	299.627579489159	2477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAAGGCTCCTTTCCTTT	1404	False	NA	1	True	ATTAAA	-18	NA	120675110	120679927	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677837_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
ENSMUST00000208784.2	chr7	+	523	5	FSM	ENSMUSG00000037337.12	ENSMUST00000208784.2	523	5	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	9.82344135219425	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTCTCGGAGGAGAGA	6962	False	NA	18	True	AATAAA	-23	NA	28700966	28702699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
ENSMUST00000208838.2	chr7	-	354	3	FSM	ENSMUSG00000036751.8	ENSMUST00000208838.2	354	3	0	0	0	0	multi-exon	FALSE	canonical	1	31	junction_2	2796.5	1378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATTGTGTGTATTACAC	NA	False	NA	-4	True	AATAAA	-18	NA	30325539	30316398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30316588_30322839_30322941_30325475
ENSMUST00000208848.2	chr7	+	832	2	FSM	ENSMUSG00000066979.7	ENSMUST00000208848.2	832	2	0	0	0	0	multi-exon	FALSE	canonical	3	1386	junction_1	0	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	131162119	131163206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_131162184_131162438
ENSMUST00000209006.2	chr7	+	635	1	FSM	ENSMUSG00000003184.16	ENSMUST00000209006.2	635	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAACAAAAAAACAGA	NA	False	NA	NA	False	AATATA	-4	NA	44647110	44647745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44647100_44647700
ENSMUST00000209032.2	chr7	-	1610	6	FSM	ENSMUSG00000035227.8	ENSMUST00000209032.2	1610	6	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_4	1023.35436677624	1347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGGAGTCTTGAAAGAAG	NA	False	NA	-3	True	AATAAA	-18	NA	99508118	99488110	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99505619_99505722_99507970
ENSMUST00000209039.2	chr7	+	1453	10	FSM	ENSMUSG00000011658.17	ENSMUST00000209039.2	1453	10	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	26.1448954015034	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTCCCAGGCGCCCCCA	NA	False	NA	6	True	AATAAA	-17	NA	44545529	44550028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44547049_44548199_44548296_44548408_44548516_44548597_44548663_44548735_44548811_44549556
ENSMUST00000209065.2	chr7	-	727	6	FSM	ENSMUSG00000006315.10	ENSMUST00000209065.2	727	6	0	0	0	0	multi-exon	FALSE	canonical	3	791	junction_1	3.48711915483254	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTATGTCCATCTCTCT	-11	True	NA	-12	True	AGTAAA	-18	NA	30428746	30427125	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428142_30428626
ENSMUST00000209066.2	chr7	+	1712	8	FSM	ENSMUSG00000003184.16	ENSMUST00000209066.2	1712	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	52.6571506084794	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGCTGTCGACTGCGT	NA	False	NA	4	True	AATAAA	-19	NA	44647089	44651813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44647491_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650447_44651096_44651213_44651587
ENSMUST00000209098.2	chr7	-	2281	15	FSM	ENSMUSG00000059119.10	ENSMUST00000209098.2	2281	15	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_14	301.333092528951	936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACTGAGATTGGTTTTT	NA	False	NA	-10	True	ATTAAA	-11	NA	143102565	143067324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102473
ENSMUST00000209099.2	chr7	+	2088	12	FSM	ENSMUSG00000030435.17	ENSMUST00000209099.2	2088	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	525.567461915969	3790	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGATCCTCATCTGT	35	False	NA	28	True	ATTAAA	-18	NA	5065243	5082932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078239_5078466_5078716_5082180
ENSMUST00000209141.2	chr7	-	3755	29	FSM	ENSMUSG00000003435.10	ENSMUST00000209141.2	3755	29	0	0	0	0	multi-exon	FALSE	canonical	3	668	junction_13	69.0304945924152	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTGTGTGTACGAAGAG	NA	False	NA	-15	True	AATAAA	-14	NA	28038131	28014322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029442_28029455_28030004_28030071_28030794_28030955_28037776
ENSMUST00000209164.2	chr7	-	432	3	FSM	ENSMUSG00000097162.3	ENSMUST00000209164.2	432	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	1.5	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTCAAACCGCTATCTAA	NA	False	NA	-13	True	AATAAA	-17	NA	89779192	89774038	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_89774241_89776135_89776253_89779079
ENSMUST00000209200.2	chr8	+	1519	8	FSM	ENSMUSG00000091490.4	ENSMUST00000209200.2	1519	8	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_1	49.9477277781891	2519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAGCCATTAGACTTAA	NA	False	NA	4	True	AATATA	-5	NA	43633577	43646901	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
ENSMUST00000209210.2	chr8	-	936	3	FSM	ENSMUSG00000110231.2	ENSMUST00000209210.2	936	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACACAGAACTGACTCTT	NA	False	NA	NA	False	AGTAAA	-17	NA	45618256	45613530	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_45614092_45614492_45614559_45617947
ENSMUST00000209212.2	chr7	-	514	7	FSM	ENSMUSG00000074129.15	ENSMUST00000209212.2	514	7	0	0	0	0	multi-exon	FALSE	canonical	3	332	junction_3	5972.4797311409	2099	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATAAAGACTGTTTGC	NA	False	NA	5	True	NA	NA	NA	44778126	44775369	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ENSMUST00000209245.2	chr7	-	1512	12	FSM	ENSMUSG00000003269.18	ENSMUST00000209245.2	1512	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	132.007888569692	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTATTTGTAATTAACATG	3171	False	NA	NA	False	NA	NA	NA	45463726	45457062	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45457273_45457356_45457512_45457599_45457672_45457796_45457874_45459546_45459663_45459994_45460144_45460277_45460391_45460952_45461034_45461603_45461723_45462270_45462338_45462432_45462581_45463521
ENSMUST00000209281.2	chr8	-	686	3	FSM	ENSMUSG00000039720.8	ENSMUST00000209281.2	686	3	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	2	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTATTCATTGCTATGTTC	NA	False	NA	-12	True	AATAAA	-12	NA	27688745	27687491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_27687710_27687955_27688099_27688420
ENSMUST00000209287.2	chr7	+	1027	6	FSM	ENSMUSG00000059070.17	ENSMUST00000209287.2	1027	6	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_1	3241.25016621673	190446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCCTCTGTGTTCAT	6008	False	NA	9	True	AATAAA	-16	NA	45367580	45370252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45368005_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
ENSMUST00000209292.2	chr7	+	2026	7	FSM	ENSMUSG00000002781.20	ENSMUST00000209292.2	2026	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	23.5401548187111	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGAGTAGTGTGGCTGC	5632	False	NA	7	True	AATAAA	-14	NA	45546504	45566837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45546526_45546858_45547091_45549055_45549161_45556341_45556537_45558745_45559026_45565506_45565697_45565834
ENSMUST00000209294.2	chr7	-	1612	10	FSM	ENSMUSG00000025494.9	ENSMUST00000209294.2	1612	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	39.3474550920669	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCGGGCTTATTTCTGTC	NA	False	NA	-32	True	AATAAA	-15	NA	140680455	140671089	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140680391
ENSMUST00000209356.2	chr8	-	1744	4	FSM	ENSMUSG00000051176.7	ENSMUST00000209356.2	1744	4	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_3	1933.09774426667	17076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43759987	43748099	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757595_43759877
ENSMUST00000209396.2	chr8	+	2421	11	FSM	ENSMUSG00000038482.12	ENSMUST00000209396.2	2421	11	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_2	290.39449030586	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTCTGTGTTTCTG	2120	False	NA	88	True	AATAAA	-18	NA	13388767	13428442	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_13388807_13389664_13389740_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ENSMUST00000209449.2	chr16	+	580	3	FSM	ENSMUSG00000097290.10	ENSMUST00000209449.2	580	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_2	32	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTCTGGAAAGATGGG	NA	False	NA	16	True	AATAAA	-21	NA	21613091	21627776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_21613197_21614599_21614726_21627427
ENSMUST00000209452.2	chr7	-	1979	13	FSM	ENSMUSG00000025512.16	ENSMUST00000209452.2	1979	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	91.7113527444788	791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGACCTACTTATTTCT	NA	False	NA	-22	True	NA	NA	NA	141119745	141075261	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_141076060_141076283_141076327_141076513_141076595_141081452_141081509_141093646_141093803_141095314_141095417_141102521_141102615_141107511_141107619_141108375_141108421_141109481_141109615_141110062_141110213_141112731_141112887_141119685
ENSMUST00000209465.2	chr8	-	997	6	FSM	ENSMUSG00000038515.11	ENSMUST00000209465.2	997	6	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_2	24.7111310951158	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAAATTAGTGTTCTCC	NA	False	NA	-32	True	TTTAAA	-7	NA	13242255	13226932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_13227143_13229322_13229509_13229582_13229756_13236882_13236980_13239622_13239748_13242049
ENSMUST00000209469.2	chr19	+	2354	4	FSM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	0	0	0	0	multi-exon	FALSE	canonical	3	6173	junction_3	71.2850303749361	46777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	5540482	5545229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408
ENSMUST00000209484.2	chr7	-	1783	6	FSM	ENSMUSG00000053801.19	ENSMUST00000209484.2	1783	6	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_5	183.663387750526	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACAAGTCCTCTGAGCTT	8628	False	NA	-7	True	AATAAA	-28	NA	45480219	45474653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45480018
ENSMUST00000209487.2	chr7	-	888	5	FSM	ENSMUSG00000033916.6	ENSMUST00000209487.2	888	5	0	0	0	0	multi-exon	FALSE	canonical	3	2610	junction_4	222.956273739942	5443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	7072	False	NA	-11	True	AATAAA	-17	NA	12768597	12765940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766749_12767755_12767970_12768561
ENSMUST00000209500.2	chr7	+	1560	5	FSM	ENSMUSG00000038618.13	ENSMUST00000209500.2	1560	5	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_1	22.576259654779	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTCAGTGTGTCCTGAG	NA	False	NA	17	True	AATAAA	-14	NA	140795806	140798568	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140795854_140796633_140796765_140796912_140797626_140797798_140798082_140798182
ENSMUST00000209536.2	chr7	+	699	3	FSM	ENSMUSG00000019158.10	ENSMUST00000209536.2	699	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	359.5	617	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTCTGAGTGATAGCTC	NA	False	NA	20	True	ATTAAA	-21	NA	16186887	16189419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_16187096_16187981_16188139_16189085
ENSMUST00000209548.2	chr7	+	1277	7	FSM	ENSMUSG00000063229.16	ENSMUST00000209548.2	1277	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	3021.28082202823	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCGTATAACCTGGCTCC	NA	False	NA	NA	False	NA	NA	NA	46495266	46504862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46503406_46503531_46504400
ENSMUST00000209564.2	chr8	-	278	2	FSM	ENSMUSG00000033282.15	ENSMUST00000209564.2	278	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGTTTCTTATAAACTTA	NA	False	NA	NA	False	GATAAA	-43	NA	92037045	92034616	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_92034815_92036965
ENSMUST00000209565.2	chr8	+	1971	2	FSM	ENSMUSG00000045969.9	ENSMUST00000209565.2	1971	2	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	0	734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATGTTTATTTCCTTAT	NA	False	NA	15	True	NA	NA	NA	11608428	11613250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_11608567_11611417
ENSMUST00000209588.2	chr7	+	373	2	FSM	ENSMUSG00000089847.9	ENSMUST00000209588.2	373	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTATTTGTCTATGGGTA	NA	False	NA	7	True	AATAAA	-16	NA	105289777	105290555	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_105289830_105290234
ENSMUST00000209626.2	chr7	-	734	8	FSM	ENSMUSG00000074129.15	ENSMUST00000209626.2	734	8	0	0	0	0	multi-exon	FALSE	canonical	3	1166	junction_7	5527.98350879137	9263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAGAAAATCTGCAAGTT	NA	False	NA	-52	True	NA	NA	NA	44778159	44775426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44777965
ENSMUST00000209657.2	chr8	-	785	1	FSM	ENSMUSG00000109933.2	ENSMUST00000209657.2	785	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17472	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAGATTTTTAATAGTG	NA	False	NA	NA	False	NA	NA	NA	11734243	11733458	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_11733500_11734200
ENSMUST00000209693.2	chr7	+	535	5	FSM	ENSMUSG00000059070.17	ENSMUST00000209693.2	535	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3268.24428210316	10050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCTCTGTGTTCATTCA	5963	False	NA	12	True	AATAAA	-19	NA	45367535	45370255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369717_45369912_45370137
ENSMUST00000209708.2	chr7	+	811	5	FSM	ENSMUSG00000030796.18	ENSMUST00000209708.2	811	5	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_2	13	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGGGTCCAGAGCATC	6888	False	NA	NA	False	NA	NA	NA	44866634	44870401	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066
ENSMUST00000209711.2	chr7	-	495	6	FSM	ENSMUSG00000074129.15	ENSMUST00000209711.2	495	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	7852.53911547087	1183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATAAAGACTGTTTGCC	NA	False	NA	6	True	NA	NA	NA	44778050	44775368	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776632_44776699_44776919_44776993_44777965
ENSMUST00000209765.2	chr2	+	1898	1	FSM	ENSMUSG00000109946.2	ENSMUST00000209765.2	1898	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTTTCTCATTTTTCTT	NA	False	NA	3	True	AATAAA	-15	NA	27332335	27334233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_27332300_27334200
ENSMUST00000209797.2	chr7	-	1849	13	FSM	ENSMUSG00000006763.15	ENSMUST00000209797.2	1849	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	196.030609854686	1010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCATCGGGATGATGGT	NA	False	NA	-12	True	AATAAA	-24	NA	46360065	46338727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_46338880_46339226_46339320_46342202_46342400_46348787_46348977_46349059_46349143_46349763_46349818_46351204_46351713_46351825_46351917_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
ENSMUST00000209812.2	chr7	-	690	8	FSM	ENSMUSG00000074129.15	ENSMUST00000209812.2	690	8	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	5944.08936744421	62037	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTTCCTTAGGCACTGC	NA	False	NA	45	True	NA	NA	NA	44778147	44775295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776512_44776632_44776699_44776919_44776993_44778123
ENSMUST00000209815.2	chr7	-	503	7	FSM	ENSMUSG00000074129.15	ENSMUST00000209815.2	503	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5948.87052771831	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAGGCCAAGATGCACT	NA	False	NA	8	True	NA	NA	NA	44778126	44775581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44775662_44775901_44775962_44776132_44776252_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ENSMUST00000209838.2	chr7	-	449	4	FSM	ENSMUSG00000003429.12	ENSMUST00000209838.2	449	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	12140.870543563	1044	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACGTACAGAACAGGCTTG	NA	False	NA	-15	True	AATAAA	-10	NA	44772952	44771816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44771983_44772252_44772383_44772619_44772663_44772842
ENSMUST00000209867.2	chr7	+	254	3	FSM	ENSMUSG00000059070.17	ENSMUST00000209867.2	254	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	4045.5	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATGGTCCTCTGTGTTCA	7447	False	NA	8	True	AATAAA	-15	NA	45369019	45370251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45369061_45369343_45369443_45370137
ENSMUST00000209872.2	chr8	+	1395	7	FSM	ENSMUSG00000091490.4	ENSMUST00000209872.2	1395	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_4	183.817542386163	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43633577	43646918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43643105_43643129_43643305_43643407_43646239
ENSMUST00000209885.2	chr8	+	2511	12	FSM	ENSMUSG00000038482.12	ENSMUST00000209885.2	2511	12	0	0	0	0	multi-exon	FALSE	canonical	3	547	junction_1	150.974903502547	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTTTCTGTAACTC	2103	False	NA	94	True	AATAAA	-24	NA	13388750	13428448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_13388807_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
ENSMUST00000209895.2	chr8	-	1408	7	FSM	ENSMUSG00000038515.11	ENSMUST00000209895.2	1408	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	188.812737917758	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGCTTCTGTGCTCATGG	3670	False	NA	NA	False	NA	NA	NA	13250587	13222021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_13222613_13229582_13229760_13236882_13236980_13239622_13239748_13242049_13242209_13250048_13250201_13250480
ENSMUST00000209927.2	chr7	-	552	7	FSM	ENSMUSG00000074129.15	ENSMUST00000209927.2	552	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	6353.08417883262	3607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCATGCCTGCCTGGCCT	NA	False	NA	-11	True	AATAAA	-9	NA	44778126	44775351	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776919_44776993_44778123
ENSMUST00000209932.2	chr8	+	664	1	FSM	ENSMUSG00000031505.12	ENSMUST00000209932.2	664	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAAAGAAAACGGTG	NA	False	NA	NA	False	NA	NA	NA	11547586	11548250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_11547600_11548200
ENSMUST00000209967.2	chr7	-	470	4	FSM	ENSMUSG00000074129.15	ENSMUST00000209967.2	470	4	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_2	7940.61084971847	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACGGACTCCTGGTGTGAA	NA	False	NA	-14	True	AAGAAA	-30	NA	44776335	44775388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44775457_44775538_44775678_44775901_44775962_44776132
ENSMUST00000209969.3	chr18	+	1929	3	FSM	ENSMUSG00000110277.3	ENSMUST00000209969.3	1929	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	46.5	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGTCTTGGTCATAGTA	NA	False	NA	9	True	NA	NA	NA	90597919	90610652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_90598024_90607079_90607207_90608954
ENSMUST00000209984.2	chr7	+	1815	8	FSM	ENSMUSG00000063229.16	ENSMUST00000209984.2	1815	8	0	0	0	0	multi-exon	FALSE	canonical	2	26	junction_1	2898.88755580904	21314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	18	True	AATAAA	-14	NA	46496505	46505050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_46496813_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
ENSMUST00000210005.2	chr8	+	1914	10	FSM	ENSMUSG00000019139.11	ENSMUST00000210005.2	1914	10	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_3	42.074302294634	910	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTTGTGTGCTTTTTC	NA	False	NA	20	True	AATAAA	-16	NA	71047130	71049940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71047399_71047472_71047635_71047788_71047922_71048010_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
ENSMUST00000210041.2	chr8	+	1881	2	FSM	ENSMUSG00000045969.9	ENSMUST00000210041.2	1881	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCATGTTTATTTCCTTA	NA	False	NA	14	True	NA	NA	NA	11608195	11613249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_11608245_11611417
ENSMUST00000210060.2	chr7	-	2577	6	FSM	ENSMUSG00000057342.16	ENSMUST00000210060.2	2577	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	47.003829631212	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGACATCCCTTTCAGTT	3262	False	NA	-6	True	AATAAA	-35	NA	45367326	45359690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45367124
ENSMUST00000210073.2	chr7	-	992	6	FSM	ENSMUSG00000074129.15	ENSMUST00000210073.2	992	6	0	0	0	0	multi-exon	FALSE	canonical	3	15796	junction_2	955.88798506938	7944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44777247	44775345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776699_44776919
ENSMUST00000210106.2	chr7	-	943	4	FSM	ENSMUSG00000050708.17	ENSMUST00000210106.2	943	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	31741.9424561398	56800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	False	NA	-20	True	AATAAA	-16	NA	45109263	45107368	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45107708_45107958_45108106_45108507_45108655_45108953
ENSMUST00000210136.2	chr8	+	1552	9	FSM	ENSMUSG00000091490.4	ENSMUST00000210136.2	1552	9	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	178.11092049619	2792	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43633577	43646918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_43633650_43635378_43635395_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
ENSMUST00000210139.2	chr7	+	1077	10	FSM	ENSMUSG00000003423.16	ENSMUST00000210139.2	1077	10	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	50.5151242478703	1967	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCCAGACAATGATGCATG	NA	False	NA	21	True	AATAAA	-21	NA	44803726	44809489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44803845_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
ENSMUST00000210146.2	chr8	+	1041	6	FSM	ENSMUSG00000031697.13	ENSMUST00000210146.2	1041	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	398.413353189875	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026551	86034699	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86032845_86032948_86034214
ENSMUST00000210157.2	chr7	-	1882	1	FSM	ENSMUSG00000025484.10	ENSMUST00000210157.2	1882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	140436183	140434301	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140434300_140436200
ENSMUST00000210163.2	chr7	+	1241	4	FSM	ENSMUSG00000094152.6	ENSMUST00000210163.2	1241	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	2.05480466765633	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGCGTGAGGCTCGATTT	NA	False	NA	NA	False	AATAAA	-19	NA	44917573	44922789	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_44917623_44917871_44918357_44921914_44922078_44922245
ENSMUST00000210167.2	chr7	-	1897	9	FSM	ENSMUSG00000025494.9	ENSMUST00000210167.2	1897	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_8	41.6921380478382	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140680437	140671087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140680391
ENSMUST00000210191.2	chr7	-	562	7	FSM	ENSMUSG00000074129.15	ENSMUST00000210191.2	562	7	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_2	7369.60067703053	9416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCCAATAAAGACTGTTT	NA	False	NA	3	True	NA	NA	NA	44778160	44775371	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44775457_44775538_44775678_44775901_44775962_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ENSMUST00000210224.2	chr7	-	2837	17	FSM	ENSMUSG00000025474.10	ENSMUST00000210224.2	2837	17	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_13	123.732827091278	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGGCTCAATGATTTC	NA	False	NA	NA	False	NA	NA	NA	139616175	139575867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139610923_139611101_139612031_139612161_139613525_139613712_139616008
ENSMUST00000210231.2	chr8	-	1685	8	FSM	ENSMUSG00000037022.4	ENSMUST00000210231.2	1685	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	28.5742855714429	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTAGAGTTTCCCTGA	NA	False	NA	-6	True	AATAAA	-17	NA	80021309	79994536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80004830_80004954_80007809_80008284_80010837_80011076_80021174
ENSMUST00000210277.2	chr1	+	1226	10	FSM	ENSMUSG00000026617.17	ENSMUST00000210277.2	1226	10	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_7	59.2152382790481	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAATACGCTTAAGACTT	NA	False	NA	3	True	ATTAAA	-17	NA	185064368	185088978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185082033_185082079_185084378_185084577_185086153_185086260_185088674
ENSMUST00000210279.2	chr8	-	2199	13	FSM	ENSMUSG00000037103.9	ENSMUST00000210279.2	2199	13	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_7	21.0218140669797	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGGTGTCCTGTTCTGT	9262	False	NA	-3	True	ACTAAA	-17	NA	84831392	84823700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84824138_84824365_84824482_84824564_84824670_84824827_84824914_84824990_84825120_84825207_84825300_84825386_84825822_84828304_84828476_84828560_84828701_84828792_84828900_84829374_84829511_84829584_84829683_84831245
ENSMUST00000210314.2	chr7	-	1658	10	FSM	ENSMUSG00000038650.16	ENSMUST00000210314.2	1658	10	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_9	176.376561249007	2155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGGTCCTTGTCGTTCTT	NA	False	NA	NA	False	ATTAAA	-16	NA	140748602	140740238	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748486
ENSMUST00000210325.2	chr10	+	2360	4	FSM	ENSMUSG00000061371.8	ENSMUST00000210325.2	2360	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	1.24721912892465	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAGTTTTATCTATATTA	NA	False	NA	NA	False	AATAAA	-11	NA	81883956	81897415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_81884064_81894203_81894331_81894516_81894578_81895350
ENSMUST00000210350.2	chr7	+	529	4	FSM	ENSMUSG00000089847.9	ENSMUST00000210350.2	529	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	163.903087897154	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTTCTTGTCTTCAGAG	NA	False	NA	NA	False	AATAAA	-17	NA	105289757	105291056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_105289830_105289968_105290065_105290234_105290368_105290828
ENSMUST00000210375.2	chr7	-	710	4	FSM	ENSMUSG00000050708.17	ENSMUST00000210375.2	710	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	30194.0672355054	1806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	False	NA	-20	True	AATAAA	-16	NA	45108845	45107368	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108747
ENSMUST00000210381.2	chr10	+	3330	4	FSM	ENSMUSG00000073427.5	ENSMUST00000210381.2	3330	4	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_3	14.0554457615387	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGATGTTTATGTTGTC	NA	False	NA	3	True	AATAAA	-15	NA	82190149	82215470	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_82190216_82204404_82204532_82204731_82204793_82212394
ENSMUST00000210392.2	chr7	-	1100	5	FSM	ENSMUSG00000003873.12	ENSMUST00000210392.2	1100	5	0	0	0	0	multi-exon	FALSE	canonical	3	3046	junction_1	70.515955641259	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCCTCCCACTGCCT	9982	False	NA	NA	False	NA	NA	NA	45116255	45111290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45111391_45112822_45112928_45114612_45114749_45115400_45115548_45115643
ENSMUST00000210428.2	chr14	-	1180	6	FSM	ENSMUSG00000054733.10	ENSMUST00000210428.2	1180	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	27.7748087302145	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAACCGCCTGCTGTGAGT	NA	False	NA	-5	True	AATAAA	-19	NA	64654397	64360074	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_64360803_64447876_64447984_64471277_64471383_64522512_64522633_64551135_64551205_64654346
ENSMUST00000210460.2	chr7	-	530	2	FSM	ENSMUSG00000110144.2	ENSMUST00000210460.2	530	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGAGCCCTGTTAGTGAC	9401	False	NA	NA	False	NA	NA	NA	45201039	45199957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45200412_45200963
ENSMUST00000210530.2	chr8	-	2398	7	FSM	ENSMUSG00000031508.15	ENSMUST00000210530.2	2398	7	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_4	160.305350988529	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685754	11661582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11685410
ENSMUST00000210534.2	chr8	+	583	5	FSM	ENSMUSG00000031628.10	ENSMUST00000210534.2	583	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	112.362137751113	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACGCTTTCTAAGTGAAT	NA	False	NA	NA	False	NA	NA	NA	47070476	47092601	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232_47087404_47092442
ENSMUST00000210558.2	chr7	+	2815	9	FSM	ENSMUSG00000074071.12	ENSMUST00000210558.2	2815	9	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_5	20.4328167417025	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGACTTTCAAGGTGCCCA	NA	False	NA	58	True	AATAAA	-29	NA	67925742	68012840	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_67925790_67950580_67950712_67954299_67954400_67971567_67971654_67978969_67979148_67999981_68000165_68003356_68003492_68007932_68008037_68010989
ENSMUST00000210564.3	chr18	+	2524	1	FSM	ENSMUSG00000109901.3	ENSMUST00000210564.3	2524	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	515	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTATTTCCTCGCTTTT	NA	False	NA	85	True	CATAAA	-20	NA	67338436	67340960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_67338400_67341000
ENSMUST00000210587.2	chr7	-	930	6	FSM	ENSMUSG00000033916.6	ENSMUST00000210587.2	930	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	1091.38616447159	6873	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGGCTGTGAGCTTATGA	7091	False	NA	-7	True	AATAAA	-21	NA	12768578	12765936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768428
ENSMUST00000210642.2	chr7	-	1602	7	FSM	ENSMUSG00000003420.9	ENSMUST00000210642.2	1602	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	28.0475786239502	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGTGTGCATCGTT	871	False	NA	-7	True	CATAAA	-10	NA	44753169	44742487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751825_44752096_44752426_44752698_44753063
ENSMUST00000210709.2	chr12	+	321	3	FSM	ENSMUSG00000109975.2	ENSMUST00000210709.2	321	3	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	13	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAGTTCTTAAAGTCAAG	6100	False	NA	NA	False	AATAAA	-23	NA	21593307	21600058	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_21593347_21595309_21595401_21599867
ENSMUST00000210752.2	chr8	+	298	2	FSM	ENSMUSG00000096917.3	ENSMUST00000210752.2	298	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTCCTGCTTCTTTCAA	NA	False	NA	9	True	NA	NA	NA	57958848	57959765	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_57958943_57959561
ENSMUST00000210789.3	chr2	-	3773	26	FSM	ENSMUSG00000061136.17	ENSMUST00000210789.3	3773	26	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_25	95.4321874421833	418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTAGTCTTTATTTCTAC	NA	False	NA	-3	True	ATTAAA	-16	NA	53081296	53028249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081160
ENSMUST00000210792.2	chr7	-	464	4	FSM	ENSMUSG00000074129.15	ENSMUST00000210792.2	464	4	0	0	0	0	multi-exon	FALSE	canonical	3	15796	junction_2	745.970955645504	6226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGGCCTGCCCT	NA	False	NA	-6	True	AATAAA	-14	NA	44776303	44775346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132
ENSMUST00000210797.2	chr7	+	646	3	FSM	ENSMUSG00000040428.20	ENSMUST00000210797.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	3	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTTGTGACATTGTGTT	NA	False	NA	8	True	AATAAA	-17	NA	45199258	45203653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45199390_45202668_45202719_45203188
ENSMUST00000210803.2	chr7	+	590	5	FSM	ENSMUSG00000037772.14	ENSMUST00000210803.2	590	5	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	637.011136087902	4585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGACACTTTGCCTT	NA	False	NA	2	True	AATAAA	-20	NA	142086897	142094484	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_142086979_142088741_142088865_142089806_142089890_142091003_142091078_142094255
ENSMUST00000210815.2	chr7	+	1535	8	FSM	ENSMUSG00000063229.16	ENSMUST00000210815.2	1535	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2882.58672099932	20914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	19	True	AATAAA	-15	NA	46495264	46505051	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_46495342_46497019_46497170_46498447_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
ENSMUST00000210878.2	chr8	+	1916	10	FSM	ENSMUSG00000019139.11	ENSMUST00000210878.2	1916	10	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	45.5894183087303	913	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTCCTTGTGTGCTTTT	NA	False	NA	18	True	AATAAA	-14	NA	71047139	71049938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
ENSMUST00000210882.2	chr7	+	1757	5	FSM	ENSMUSG00000025470.12	ENSMUST00000210882.2	1757	5	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	31.3318926973779	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATCTGTTCTTCTTCATG	NA	False	NA	19	True	AATAAA	-16	NA	139616440	139620515	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238
ENSMUST00000210917.2	chr19	+	410	2	FSM	ENSMUSG00000110156.3	ENSMUST00000210917.2	410	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGCTCACACTACACAG	9355	False	NA	0	True	NA	NA	NA	5962980	5964854	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5963101_5964564
ENSMUST00000210962.2	chr7	-	257	2	FSM	ENSMUSG00000030834.8	ENSMUST00000210962.2	257	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATTCCTCATCCTAAAAC	NA	False	NA	NA	False	ATTAAA	-19	NA	45622743	45616982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45617145_45622648
ENSMUST00000210966.2	chr7	-	956	1	FSM	ENSMUSG00000030751.19	ENSMUST00000210966.2	956	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	255	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113875302	113874346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_113874300_113875300
ENSMUST00000210967.2	chr7	-	658	8	FSM	ENSMUSG00000074129.15	ENSMUST00000210967.2	658	8	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_2	5939.18297480076	214844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44778144	44775345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44775457_44775538_44775678_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
ENSMUST00000210987.2	chr8	+	636	4	FSM	ENSMUSG00000031848.16	ENSMUST00000210987.2	636	4	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_2	1451.48498671763	2085	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGAGCCAGCTGTTCTTC	NA	False	NA	14	True	AATAAA	-14	NA	71126081	71131396	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71126108_71129204_71129247_71130603_71130785_71131009
ENSMUST00000210997.2	chr7	+	1315	9	FSM	ENSMUSG00000030825.20	ENSMUST00000210997.2	1315	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	257.274385384554	1739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTTGGAGTGGTCGTGT	NA	False	NA	7	True	NA	NA	NA	45205467	45216742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45205518_45205736_45205820_45207031_45207099_45208449_45208531_45208804_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
ENSMUST00000211045.2	chr8	-	683	2	FSM	ENSMUSG00000037725.9	ENSMUST00000211045.2	683	2	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_1	0	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTTTAGAAAATAGATACC	5785	False	NA	NA	False	NA	NA	NA	22665882	22664616	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_22665188_22665770
ENSMUST00000211061.2	chr7	+	552	5	FSM	ENSMUSG00000059070.17	ENSMUST00000211061.2	552	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3596.15853203109	12307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGATGATGGTCCTCTGTG	5950	False	NA	4	True	AATAAA	-11	NA	45367522	45370247	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45367564_45368952_45369061_45369343_45369443_45369717_45369912_45370137
ENSMUST00000211115.2	chr8	+	2601	7	FSM	ENSMUSG00000031628.10	ENSMUST00000211115.2	2601	7	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	22.2816566310098	964	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTATTTGAGGGTTTG	NA	False	NA	21	True	CATAAA	-17	NA	47070325	47092724	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
ENSMUST00000211174.2	chr8	-	2447	7	FSM	ENSMUSG00000031508.15	ENSMUST00000211174.2	2447	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	195.638626610959	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGTCTCTGAAACTGC	NA	False	NA	-3	True	AATAAA	-14	NA	11685754	11661583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11673696_11673859_11678438_11678531_11682865_11683019_11685410
ENSMUST00000211217.2	chr8	+	997	6	FSM	ENSMUSG00000031629.15	ENSMUST00000211217.2	997	6	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_2	30.0865418418269	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCCTTTTATTTTTGAG	NA	False	NA	21	True	NA	NA	NA	47005072	47016034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452
ENSMUST00000211221.2	chr8	-	641	1	FSM	ENSMUSG00000052456.10	ENSMUST00000211221.2	641	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACAGCTGGTTTGTGCCA	8418	False	NA	NA	False	NA	NA	NA	85751892	85751251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_85751300_85751900
ENSMUST00000211234.2	chr7	+	832	5	FSM	ENSMUSG00000002778.15	ENSMUST00000211234.2	832	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	102.020524895729	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGTTTTTGATTCTGATG	4299	False	NA	15	True	AAGAAA	-25	NA	45522550	45532671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45522599_45523182_45523284_45523466_45523626_45530923_45531177_45532400
ENSMUST00000211248.2	chr8	-	1837	5	FSM	ENSMUSG00000051176.7	ENSMUST00000211248.2	1837	5	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	1844.21519555067	13892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43759973	43748099	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_43749574_43753664_43753743_43755911_43756017_43757512_43757597_43759877
ENSMUST00000211344.2	chr7	-	606	5	FSM	ENSMUSG00000033916.6	ENSMUST00000211344.2	606	5	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_3	1201.14705594278	800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	7098	False	NA	-11	True	AATAAA	-17	NA	12768571	12765940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12767755_12767970_12768561
ENSMUST00000211352.2	chr7	-	1453	7	FSM	ENSMUSG00000019539.12	ENSMUST00000211352.2	1453	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_6	48.2482008875864	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	6660	False	NA	-4	True	AATAAA	-25	NA	44741645	44732336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741528
ENSMUST00000211365.2	chr7	-	801	6	FSM	ENSMUSG00000003873.12	ENSMUST00000211365.2	801	6	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	1143.13684220219	12153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCCCTTGTCCGCCCA	9977	False	NA	-2	True	AATAAA	-22	NA	45116260	45111120	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45111387_45112822_45112928_45114612_45114749_45115400_45115548_45115643_45115696_45116165
ENSMUST00000211372.2	chr7	+	688	4	FSM	ENSMUSG00000025481.13	ENSMUST00000211372.2	688	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	116.448367194316	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAATCTGAACCTATCATT	NA	False	NA	27	True	AATAAA	-17	NA	140415184	140417879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140415316_140415524_140415665_140416659_140416796_140417598
ENSMUST00000211425.2	chr7	+	834	4	FSM	ENSMUSG00000059070.17	ENSMUST00000211425.2	834	4	0	0	0	0	multi-exon	FALSE	canonical	3	7563	junction_3	587.15263962808	495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACCCTGGATCTTAACTG	7113	False	NA	-34	True	NA	NA	NA	45368685	45370209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45368764_45368952_45369443_45369717_45369912_45370137
ENSMUST00000211435.2	chr7	+	402	4	FSM	ENSMUSG00000059070.17	ENSMUST00000211435.2	402	4	0	0	0	0	multi-exon	FALSE	canonical	3	8095	junction_2	387.345094485812	860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTTTGACCAGCTGGCC	7060	False	NA	NA	False	NA	NA	NA	45368632	45369781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45368764_45368952_45369061_45369343_45369443_45369717
ENSMUST00000211438.2	chr7	-	503	4	FSM	ENSMUSG00000074129.15	ENSMUST00000211438.2	503	4	0	0	0	0	multi-exon	FALSE	canonical	3	11064	junction_3	2438.98353144638	4401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGCCCTGGAGCGCCTC	NA	False	NA	NA	False	NA	NA	NA	44778159	44776188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44776517_44776632_44776699_44776919_44776993_44778123
ENSMUST00000211443.2	chr16	+	767	4	FSM	ENSMUSG00000097290.10	ENSMUST00000211443.2	767	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	60.8896999134957	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGTTGAAAGGTCCATG	NA	False	NA	30	True	AATAAA	-35	NA	21613067	21627790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_21613197_21614599_21614726_21625720_21625870_21627427
ENSMUST00000211513.2	chr7	+	1156	3	FSM	ENSMUSG00000059824.13	ENSMUST00000211513.2	1156	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	20	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATCAACACAATCCTGA	NA	False	NA	NA	False	NA	NA	NA	45354692	45359538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45355187_45357683_45357896_45359088
ENSMUST00000211535.2	chr7	-	595	2	FSM	ENSMUSG00000003420.9	ENSMUST00000211535.2	595	2	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTCGTCTCTGTGTCCGT	821	False	NA	NA	False	AATACA	-13	NA	44753219	44752258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44752698_44753063
ENSMUST00000211583.2	chr7	-	514	3	FSM	ENSMUSG00000003429.12	ENSMUST00000211583.2	514	3	0	0	0	0	multi-exon	FALSE	canonical	3	18027	junction_1	6373.5	674	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTATCTCCATTACATCCG	NA	False	NA	NA	False	NA	NA	NA	44773775	44772335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44772663_44772842_44772975_44773720
ENSMUST00000211615.2	chr7	-	548	3	FSM	ENSMUSG00000003873.12	ENSMUST00000211615.2	548	3	0	0	0	0	multi-exon	FALSE	canonical	3	3184	junction_2	25.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCCTGCTTGCTCTGGCCT	8909	False	NA	NA	False	NA	NA	NA	45115468	45112583	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_45112928_45114612_45114749_45115400
ENSMUST00000211626.2	chr7	-	726	6	FSM	ENSMUSG00000033916.6	ENSMUST00000211626.2	726	6	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_3	1108.87882115225	2060	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAATTTACCAAGGCTGTG	7003	False	NA	-16	True	AATAAA	-12	NA	12768666	12765945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766718_12766749_12767755_12767970_12768561
ENSMUST00000211654.2	chr7	+	1362	9	FSM	ENSMUSG00000025503.6	ENSMUST00000211654.2	1362	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1588.07752782256	17737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTGTTTCATTTCACCG	3840	False	NA	16	True	ATTAAA	-15	NA	140972111	140982879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140972232_140975522_140975658_140975961_140976086_140978407_140978516_140980200_140980333_140981493_140981670_140981784_140981983_140982096_140982243_140982656
ENSMUST00000211660.2	chr7	-	494	3	FSM	ENSMUSG00000040026.9	ENSMUST00000211660.2	494	3	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_2	3.5	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTCGCTGTCACTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	46363173	46361422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_46361689_46362012_46362152_46363084
ENSMUST00000211710.2	chr18	+	2003	4	FSM	ENSMUSG00000110277.3	ENSMUST00000211710.2	2003	4	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	1.63299316185545	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATAAGTGTTGTCTTGGTC	NA	False	NA	3	True	NA	NA	NA	90597900	90610646	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_90598024_90607079_90607207_90607397_90607459_90608954
ENSMUST00000211716.2	chr7	+	1350	5	FSM	ENSMUSG00000002778.15	ENSMUST00000211716.2	1350	5	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_4	97.5256376549264	1067	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGCTGTTCCCTGCCC	3997	False	NA	14	True	AATAAA	-18	NA	45522248	45533153	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45530984_45532400
ENSMUST00000211719.2	chr8	-	1622	2	FSM	ENSMUSG00000037070.11	ENSMUST00000211719.2	1622	2	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	0	2793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCAATTTTCTGTCTTG	NA	False	NA	NA	False	AGTAAA	-10	NA	79235508	79231905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_79233447_79235427
ENSMUST00000211725.2	chr7	-	493	5	FSM	ENSMUSG00000003429.12	ENSMUST00000211725.2	493	5	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_1	12273.9079045755	2403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTCTGGCCAATGCCCTA	NA	False	NA	-55	True	NA	NA	NA	44773759	44771856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44771973_44772252_44772383_44772586_44772663_44772842_44772975_44773720
ENSMUST00000211759.2	chr7	+	915	6	FSM	ENSMUSG00000025503.6	ENSMUST00000211759.2	915	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1496.17504323525	1031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTCATTTCACCGTC	2942	False	NA	18	True	ATTAAA	-17	NA	140979340	140982881	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_140979379_140980200_140980333_140981493_140981670_140981784_140981983_140982096_140982243_140982656
ENSMUST00000211768.2	chr11	-	557	2	FSM	ENSMUSG00000019761.11	ENSMUST00000211768.2	557	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACTATAAAAATCTGTCA	8339	False	NA	NA	False	AATAAA	-25	NA	99276923	99276092	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_99276463_99276736
ENSMUST00000211789.2	chr7	+	878	5	FSM	ENSMUSG00000025470.12	ENSMUST00000211789.2	878	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	137.414291469265	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCATCTGTTCTTCTTC	NA	False	NA	16	True	AATAAA	-13	NA	139616317	139620512	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_+_139616520_139616732_139616807_139617428_139617554_139619238_139619359_139620155
ENSMUST00000211807.2	chr8	+	1085	1	FSM	ENSMUSG00000031765.9	ENSMUST00000211807.2	1085	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7203	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGGTTTTCTTGGTGT	NA	False	NA	27	True	AATAAA	-16	NA	94905868	94906953	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_94905900_94907000
ENSMUST00000211809.2	chr8	+	525	3	FSM	ENSMUSG00000054400.17	ENSMUST00000211809.2	525	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	140	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATATTTTCTGCAGATCT	4834	False	NA	6	True	ATTAAA	-18	NA	104977534	104990075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_104977728_104983916_104984076_104989902
ENSMUST00000211868.2	chr8	+	564	3	FSM	ENSMUSG00000051671.8	ENSMUST00000211868.2	564	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	118	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTATTTTCCTTTCCCC	NA	False	NA	-81	True	TATAAA	-21	NA	127149266	127152084	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_127149290_127149371_127149570_127151741
ENSMUST00000211874.2	chr8	-	928	1	FSM	ENSMUSG00000110444.3	ENSMUST00000211874.2	928	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	69848191	69847263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_69847300_69848200
ENSMUST00000211898.2	chr8	+	1078	4	FSM	ENSMUSG00000071078.7	ENSMUST00000211898.2	1078	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	271.261661295674	1091	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACACCCCATTTGTGGTA	447	False	NA	18	True	NA	NA	NA	70583982	70586398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70584250_70584567_70584659_70585236_70585305_70585746
ENSMUST00000211963.2	chr1	+	449	2	FSM	ENSMUSG00000046330.11	ENSMUST00000211963.2	449	2	0	0	0	0	multi-exon	FALSE	canonical	2	15690	junction_1	0	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAAGTTCAGACTTTGAT	NA	False	NA	NA	False	NA	NA	NA	72750939	72751729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_72750960_72751300
ENSMUST00000212019.2	chr8	-	795	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212019.2	795	4	0	0	0	0	multi-exon	FALSE	canonical	3	16397	junction_3	7846.8208565989	3832	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350042	71348022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71348152_71348243_71348690_71348776_71348957_71350002
ENSMUST00000212031.2	chr8	-	409	4	FSM	ENSMUSG00000063253.12	ENSMUST00000212031.2	409	4	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_1	12.1928941054479	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCTGCTTTTTTTCTTCC	7419	False	NA	NA	False	AGTAAA	-26	NA	84169134	84162500	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84162670_84164181_84164266_84164613_84164686_84169050
ENSMUST00000212057.2	chr1	+	1238	2	FSM	ENSMUSG00000110712.2	ENSMUST00000212057.2	1238	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTCAAGAATCATTTCATG	NA	False	NA	NA	False	AATAAA	-21	NA	72680346	72682122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_72681432_72681969
ENSMUST00000212061.2	chr8	-	1673	6	FSM	ENSMUSG00000013155.11	ENSMUST00000212061.2	1673	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	12.3838604643302	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGTTCCATAGGAGC	NA	False	NA	-14	True	ATTAAA	-15	NA	106434842	106430282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_106430654_106430744_106430882_106430982_106431393_106433197_106433371_106434180_106434376_106434455
ENSMUST00000212066.2	chr9	-	2810	6	FSM	ENSMUSG00000025894.12	ENSMUST00000212066.2	2810	6	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_5	303.486671865504	2646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTTAGGGCTTGACATG	-1	True	NA	NA	False	AATAAA	-44	NA	4309469	4294793	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309287
ENSMUST00000212072.2	chr8	+	1930	4	FSM	ENSMUSG00000055835.11	ENSMUST00000212072.2	1930	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	33.7671766990109	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATGAGTGTTTTTGGCTT	NA	False	NA	10	True	AATAGA	-17	NA	112370032	112397640	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_112370245_112385017_112385074_112392692_112392837_112396122
ENSMUST00000212075.2	chr9	+	2800	3	FSM	ENSMUSG00000041124.12	ENSMUST00000212075.2	2800	3	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	13	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCTGTCTGAAAGTTTA	-5	True	NA	14	True	AATAAA	-1	NA	4376561	4386870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_4376624_4383536_4384143_4384738
ENSMUST00000212095.2	chr8	+	1257	6	FSM	ENSMUSG00000031622.17	ENSMUST00000212095.2	1257	6	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_5	28.5587114555261	4116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTAGTTATGTGCAGC	NA	False	NA	21	True	AATAAA	-18	NA	73449917	73466531	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996
ENSMUST00000212129.2	chr8	-	578	5	FSM	ENSMUSG00000045128.10	ENSMUST00000212129.2	578	5	0	0	0	0	multi-exon	FALSE	canonical	1	58	junction_3	13957.9624766654	49076	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350044	71348022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348789_71348957_71350002
ENSMUST00000212158.2	chr8	+	1862	1	FSM	ENSMUSG00000110631.2	ENSMUST00000212158.2	1862	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	218	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAGTTAGAGAGAGAG	2115	False	NA	NA	False	NA	NA	NA	122559985	122561847	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_122560000_122561800
ENSMUST00000212227.2	chr8	+	3323	8	FSM	ENSMUSG00000019261.4	ENSMUST00000212227.2	3323	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	131.594615608477	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTCTTACTGTCTTAT	NA	False	NA	15	True	AATAAA	-15	NA	71358636	71370173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71358772_71363588_71363694_71364489_71364573_71365156_71365298_71365549_71367639_71368117_71368186_71368994_71369219_71369695
ENSMUST00000212270.2	chr8	-	3315	12	FSM	ENSMUSG00000036534.7	ENSMUST00000212270.2	3315	12	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_11	48.4964001390441	505	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTGTGTCTCCTTTATC	NA	False	NA	-4	True	AATAAA	-15	NA	96580167	96562551	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_96564300_96567041_96567097_96568149_96568350_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429_96579536_96580113
ENSMUST00000212289.2	chr8	-	338	3	FSM	ENSMUSG00000110489.2	ENSMUST00000212289.2	338	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	187	3993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAATAGTACTGGTATG	NA	False	NA	-4	True	TTTAAA	-1	NA	96544306	96535179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_96535388_96539051_96539129_96544253
ENSMUST00000212291.2	chr8	+	633	2	FSM	ENSMUSG00000031765.9	ENSMUST00000212291.2	633	2	0	0	0	0	multi-exon	FALSE	canonical	3	14831	junction_1	0	9195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	False	NA	29	True	AATAAA	-18	NA	94905838	94906955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_94905967_94906450
ENSMUST00000212320.2	chr8	-	1121	9	FSM	ENSMUSG00000036120.11	ENSMUST00000212320.2	1121	9	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_5	20.7590341779188	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCAGGGTGCCTCCCA	9603	False	NA	2	True	AATAAA	-18	NA	70591746	70585915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_70586114_70586875_70586957_70587261_70587329_70587688_70587815_70587940_70588042_70588185_70588282_70588859_70588941_70590678_70590874_70591570
ENSMUST00000212332.2	chr8	-	426	4	FSM	ENSMUSG00000031897.10	ENSMUST00000212332.2	426	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	117.139043685509	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACAGAAGGCTGTGTCTT	NA	False	NA	-7	True	AATAAA	-20	NA	106663657	106662366	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663613
ENSMUST00000212335.2	chr1	+	400	4	FSM	ENSMUSG00000046330.11	ENSMUST00000212335.2	400	4	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_2	7389.73726792021	2580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTTTTTTTTTTGCCTT	NA	False	NA	-2	True	AATAAA	-15	NA	72750916	72752776	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_72750960_72751300_72751384_72752340_72752499_72752660
ENSMUST00000212341.2	chr8	+	1519	2	FSM	ENSMUSG00000031813.9	ENSMUST00000212341.2	1519	2	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_1	0	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGGCTGGAGCATTAGC	NA	False	NA	NA	False	NA	NA	NA	71995571	71997165	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71995702_71995776
ENSMUST00000212378.2	chr8	-	393	5	FSM	ENSMUSG00000045128.10	ENSMUST00000212378.2	393	5	0	0	0	0	multi-exon	FALSE	canonical	2	350	junction_4	13656.4517422169	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACCAAGAGGCCCAACACC	NA	False	NA	-80	True	NA	NA	NA	71350043	71348087	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348825_71350002
ENSMUST00000212398.2	chr8	+	518	4	FSM	ENSMUSG00000008450.9	ENSMUST00000212398.2	518	4	0	0	0	0	multi-exon	FALSE	canonical	3	2641	junction_1	479.48606746066	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTTTACCTTCCCCGCTC	NA	False	NA	NA	False	NA	NA	NA	106587296	106603421	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141
ENSMUST00000212410.2	chr8	+	750	5	FSM	ENSMUSG00000054400.17	ENSMUST00000212410.2	750	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	127.002706664071	2376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTCTGCAGATCTCCTT	4823	False	NA	10	True	ATTAAA	-22	NA	104977523	104990079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_104977728_104983916_104984076_104988105_104988202_104988799_104988914_104989902
ENSMUST00000212426.2	chr8	+	2604	17	FSM	ENSMUSG00000005410.7	ENSMUST00000212426.2	2604	17	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_1	269.284113147712	3150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGTGCTGTGTGAATACA	NA	False	NA	32	True	AATAAA	-45	NA	75836203	75854321	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_75836226_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
ENSMUST00000212432.2	chr1	+	665	3	FSM	ENSMUSG00000046330.11	ENSMUST00000212432.2	665	3	0	0	0	0	multi-exon	FALSE	canonical	2	15690	junction_1	1470.5	87578	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAACGGGTTATTTACG	NA	False	NA	-23	True	NA	NA	NA	72750472	72752755	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_+_72750960_72751300_72751384_72752660
ENSMUST00000212477.2	chr8	+	426	4	FSM	ENSMUSG00000015013.10	ENSMUST00000212477.2	426	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	309.227352534596	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACCACTGCCCGGCTTC	5516	False	NA	NA	False	NA	NA	NA	123338378	123341009	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_123338433_123339804_123339978_123340659_123340748_123340898
ENSMUST00000212490.2	chr8	+	1115	2	FSM	ENSMUSG00000110537.2	ENSMUST00000212490.2	1115	2	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	0	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAACATGGTGGTGTGTCT	3328	False	NA	1	True	NA	NA	NA	123899583	123905504	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_123899783_123904588
ENSMUST00000212494.2	chr8	-	473	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212494.2	473	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	8545.57961105558	1415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAACTTGAGACTGTC	NA	False	NA	-35	True	NA	NA	NA	71350056	71348042	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71348152_71348559_71348690_71348776_71348957_71350002
ENSMUST00000212569.2	chr8	+	1953	17	FSM	ENSMUSG00000001472.18	ENSMUST00000212569.2	1953	17	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	148.36315243348	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTGTCCAGATGCTGTG	NA	False	NA	-77	True	NA	NA	NA	124100611	124127970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_124100804_124108138_124108301_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124127814
ENSMUST00000212571.2	chr8	+	2649	18	FSM	ENSMUSG00000001472.18	ENSMUST00000212571.2	2649	18	0	0	0	0	multi-exon	TRUE	canonical	3	129	junction_17	98.3685253625717	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACATGGTGATAT	NA	False	NA	8	True	AAGAAA	-13	NA	124100491	124130545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129888
ENSMUST00000212578.2	chr8	+	447	2	FSM	ENSMUSG00000031756.6	ENSMUST00000212578.2	447	2	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCCCAGCCCTGGCAGCC	NA	False	NA	NA	False	NA	NA	NA	117648468	117649459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_117648523_117649066
ENSMUST00000212600.2	chr8	-	638	5	FSM	ENSMUSG00000006519.12	ENSMUST00000212600.2	638	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	360.755110843908	1253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGGACAAGAAATTCTCCAT	NA	False	NA	NA	False	AATAAA	-18	NA	123159647	123151514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_123151827_123152924_123153007_123153967_123154043_123154393_123154464_123159548
ENSMUST00000212603.2	chr8	+	2169	5	FSM	ENSMUSG00000056820.8	ENSMUST00000212603.2	2169	5	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_1	23.7631542519086	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	5246	False	NA	NA	False	NA	NA	NA	125739787	125757160	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506
ENSMUST00000212618.2	chr8	-	1509	10	FSM	ENSMUSG00000033931.10	ENSMUST00000212618.2	1509	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	55.208694967369	809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAGTGTTCAAATGGTCA	NA	False	NA	-11	True	AATAAA	-21	NA	127697820	127675775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127692131_127692373_127696732_127696879_127697487_127697660_127697739
ENSMUST00000212642.2	chr8	-	1182	9	FSM	ENSMUSG00000038000.11	ENSMUST00000212642.2	1182	9	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_4	85.2304779700314	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGAGAGAGATTCAGGG	NA	False	NA	-13	True	AATAAA	-16	NA	106427685	106424789	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426492_106426528_106426635_106426681_106426913_106427035_106427334_106427472_106427551
ENSMUST00000212644.2	chr9	+	2085	3	FSM	ENSMUSG00000025898.7	ENSMUST00000212644.2	2085	3	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_2	20.5	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGGTTT	9	True	NA	NA	False	NA	NA	NA	3404087	3413199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_3404191_3409965_3410077_3411328
ENSMUST00000212681.2	chr8	+	3001	4	FSM	ENSMUSG00000059897.6	ENSMUST00000212681.2	3001	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	2.49443825784929	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGACCCTTGTCCTGTA	7200	False	NA	27	True	AATAAA	-18	NA	69661689	69683188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_69661812_69678994_69679122_69679323_69679382_69680494
ENSMUST00000212684.2	chr8	-	1023	5	FSM	ENSMUSG00000031796.8	ENSMUST00000212684.2	1023	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	193.603977231874	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGAAGAATTAGAGACGTCC	NA	False	NA	NA	False	NA	NA	NA	96161458	96147029	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149523_96161115
ENSMUST00000212686.2	chr8	-	554	4	FSM	ENSMUSG00000031897.10	ENSMUST00000212686.2	554	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	46.7784375778224	2186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACAGAAGGCTGTGTCT	NA	False	NA	-8	True	AATAAA	-19	NA	106663670	106662367	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497
ENSMUST00000212707.2	chr8	+	642	1	FSM	ENSMUSG00000110679.2	ENSMUST00000212707.2	642	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4034	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGCTTCAATAGTTCTC	NA	False	NA	NA	False	AATATA	-45	NA	94949620	94950262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_94949600_94950300
ENSMUST00000212709.2	chr8	-	700	5	FSM	ENSMUSG00000045128.10	ENSMUST00000212709.2	700	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	13791.0578727667	40151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTGCTTGTTTGCTTC	NA	False	NA	-19	True	AATAAA	-11	NA	71349927	71348026	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71349772
ENSMUST00000212716.2	chr8	-	1568	6	FSM	ENSMUSG00000013155.11	ENSMUST00000212716.2	1568	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	9.8508882848198	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGTTCCATAGGAGC	NA	False	NA	-14	True	ATTAAA	-15	NA	106434777	106430282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180
ENSMUST00000212796.2	chr8	-	679	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212796.2	679	4	0	0	0	0	multi-exon	FALSE	canonical	3	16397	junction_3	7152.95244403782	6339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350040	71348022	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71348354_71348559_71348690_71348776_71348957_71350002
ENSMUST00000212806.2	chr8	+	388	3	FSM	ENSMUSG00000031762.8	ENSMUST00000212806.2	388	3	0	0	0	0	multi-exon	TRUE	canonical	3	461	junction_1	6516.5	6691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGCTTGTCTCTGTGCAT	NA	False	NA	33	True	AATAAA	-19	NA	94899487	94900192	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_94899581_94899754_94899821_94899963
ENSMUST00000212811.2	chr8	+	2653	16	FSM	ENSMUSG00000005410.7	ENSMUST00000212811.2	2653	16	0	0	0	0	multi-exon	FALSE	canonical	3	1402	junction_7	114.72564374774	2770	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAGTAGTGCTGTGTGA	NA	False	NA	27	True	AATAAA	-40	NA	75836251	75854316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
ENSMUST00000212824.2	chr8	+	2928	23	FSM	ENSMUSG00000032939.15	ENSMUST00000212824.2	2928	23	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	328.081966678305	793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAGCAAGGAATCAAAGCC	NA	False	NA	NA	False	ATTAAA	-15	NA	94941228	95041694	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_94941260_94947187_94947240_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
ENSMUST00000212831.2	chr8	+	1309	4	FSM	ENSMUSG00000033998.10	ENSMUST00000212831.2	1309	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	57.0438427878066	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTGTGGTTTATTACAA	NA	False	NA	19	True	AATAAA	-16	NA	126722174	126757422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_126722554_126751750_126752147_126756230_126756432_126757089
ENSMUST00000212851.2	chr8	+	1507	3	FSM	ENSMUSG00000071078.7	ENSMUST00000212851.2	1507	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	269.5	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACCCCATTTGTGGTAC	461	False	NA	19	True	NA	NA	NA	70583996	70586399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_70584250_70584567_70584659_70585236
ENSMUST00000212887.2	chr8	+	488	2	FSM	ENSMUSG00000000740.13	ENSMUST00000212887.2	488	2	0	0	0	0	multi-exon	FALSE	canonical	3	17818	junction_1	0	358	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATAAAGCAAAAGCTGGGT	NA	False	NA	4	True	AATAAA	-5	NA	123830393	123831970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_123830694_123831782
ENSMUST00000212920.2	chr8	+	2659	5	FSM	ENSMUSG00000031924.5	ENSMUST00000212920.2	2659	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	638.782190969661	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCCGTTTTTTCTATTT	NA	False	NA	55	True	AGTAAA	-11	NA	107892546	107912622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_107892605_107896442_107896572_107897022_107897053_107906045_107906075_107910209
ENSMUST00000212938.2	chr8	-	646	3	FSM	ENSMUSG00000031897.10	ENSMUST00000212938.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_1	9	2191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAACACTTAAACAGAAGG	NA	False	NA	-16	True	AATAAA	-11	NA	106663659	106662375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_106662538_106662627_106662780_106663327
ENSMUST00000212972.2	chr8	+	310	1	FSM	ENSMUSG00000005699.17	ENSMUST00000212972.2	310	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCCTTCGGATTGGTC	NA	False	NA	NA	False	AATAAA	-14	NA	106427782	106428092	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_106427800_106428100
ENSMUST00000212981.2	chr8	-	1184	7	FSM	ENSMUSG00000031754.11	ENSMUST00000212981.2	1184	7	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_6	876.397677363929	8790	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTTTTTTAAGTTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	94763634	94746075	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763253
ENSMUST00000212990.2	chr8	-	648	7	FSM	ENSMUSG00000031708.18	ENSMUST00000212990.2	648	7	0	0	0	0	multi-exon	FALSE	canonical	3	3555	junction_3	216.890461344482	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGTGTTCTTTAGG	NA	False	NA	-3	True	AATAAA	-15	NA	84299569	84298326	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469
ENSMUST00000213005.2	chr8	+	1580	13	FSM	ENSMUSG00000033862.8	ENSMUST00000213005.2	1580	13	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	49.2958754190788	1314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	2149	False	NA	10	True	GATAAA	-11	NA	123951604	123958989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_123951670_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
ENSMUST00000213037.2	chr8	+	711	2	FSM	ENSMUSG00000031839.8	ENSMUST00000213037.2	711	2	0	0	0	0	multi-exon	FALSE	canonical	3	2011	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGCGGGGGCCTGGGGGG	NA	False	NA	NA	False	TTTAAA	-4	NA	120071254	120072280	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_120071360_120071674
ENSMUST00000213053.2	chr8	-	576	5	FSM	ENSMUSG00000045128.10	ENSMUST00000213053.2	576	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_4	13769.0618144447	10211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAGAGACCCACTGAATA	NA	False	NA	-51	True	NA	NA	NA	71350039	71348058	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71349976
ENSMUST00000213062.2	chr8	-	560	3	FSM	ENSMUSG00000006589.9	ENSMUST00000213062.2	560	3	0	0	0	0	multi-exon	FALSE	canonical	3	1410	junction_2	2	1082	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTCTCCTCAGTTTGT	NA	False	NA	-5	True	AATAAA	-17	NA	123302228	123301373	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_123301767_123301875_123301955_123302140
ENSMUST00000213065.2	chr8	+	842	3	FSM	ENSMUSG00000095026.3	ENSMUST00000213065.2	842	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	4.5	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTAAAGTCTCACGATTCA	NA	False	NA	NA	False	CATAAA	-3	NA	71171191	71175283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_71171282_71174425_71174587_71174692
ENSMUST00000213080.2	chr8	-	860	1	FSM	ENSMUSG00000039067.6	ENSMUST00000213080.2	860	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	115	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108315090	108314230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_108314200_108315100
ENSMUST00000213158.2	chr9	+	711	6	FSM	ENSMUSG00000059412.8	ENSMUST00000213158.2	711	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	87.0461946325053	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGAGTGCTTATCATTC	NA	False	NA	34	True	AATGAA	-20	NA	45317222	45321576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_45317465_45319403_45319443_45319597_45319673_45320810_45320848_45321000_45321032_45321289
ENSMUST00000213275.2	chr9	-	679	2	FSM	ENSMUSG00000060510.15	ENSMUST00000213275.2	679	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	AATACA	-6	NA	20432706	20431803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_20432416_20432639
ENSMUST00000213296.2	chr9	-	1868	15	FSM	ENSMUSG00000032198.10	ENSMUST00000213296.2	1868	15	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	50.5494807094989	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGATTGCCTCTGTTCTCT	6275	False	NA	-6	True	NA	NA	NA	21763912	21748644	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21748848_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
ENSMUST00000213316.2	chr9	-	1454	3	FSM	ENSMUSG00000032180.12	ENSMUST00000213316.2	1454	3	0	0	0	0	multi-exon	FALSE	canonical	3	564	junction_2	0.5	3619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTGGTGACTGGGCTTA	NA	False	NA	-3	True	AATAAA	-21	NA	21421483	21418848	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21419688_21420226_21420648_21421289
ENSMUST00000213371.2	chr9	+	1766	5	FSM	ENSMUSG00000057982.9	ENSMUST00000213371.2	1766	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	49.3273504254992	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCCTGGCCGGCCATGC	749	False	NA	34	True	NA	NA	NA	22137018	22150989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_22137129_22146315_22146443_22147323_22147591_22148970_22149081_22149837
ENSMUST00000213388.2	chr9	+	2344	9	FSM	ENSMUSG00000032114.10	ENSMUST00000213388.2	2344	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	9.53939201416946	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGGCTCATCCTTTCA	NA	False	NA	NA	False	AATAAA	-21	NA	44308395	44314265	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44308744_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
ENSMUST00000213396.2	chr9	+	2518	6	FSM	ENSMUSG00000032392.12	ENSMUST00000213396.2	2518	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	11.7915223783869	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTGTGACTGTCTGCA	NA	False	NA	NA	False	AATAAA	-21	NA	65122426	65146506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_65122915_65133334_65133473_65137087_65137295_65140950_65141123_65143922_65144065_65145135
ENSMUST00000213426.2	chr9	+	1111	1	FSM	ENSMUSG00000111472.2	ENSMUST00000213426.2	1111	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	164	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATCCTTCAACAAACCAA	NA	False	NA	NA	False	NA	NA	NA	104963118	104964229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_104963100_104964200
ENSMUST00000213448.2	chr9	+	845	3	FSM	ENSMUSG00000048758.15	ENSMUST00000213448.2	845	3	0	0	0	0	multi-exon	FALSE	canonical	3	3966	junction_1	565.5	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGCTCCCAAAGGTGCTC	NA	False	NA	NA	False	NA	NA	NA	106306753	106308587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106307214_106307506_106307572_106308267
ENSMUST00000213508.2	chr9	-	1780	4	FSM	ENSMUSG00000032026.8	ENSMUST00000213508.2	1780	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	526.615820330364	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATATGATTCAGTTAAAGT	NA	False	NA	-15	True	AATAAA	-10	NA	48391915	48384790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_48386200_48386419_48386498_48390609_48390694_48391706
ENSMUST00000213528.2	chr10	-	969	8	FSM	ENSMUSG00000000296.9	ENSMUST00000213528.2	969	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	226.139563192327	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGTTCTGAATTCTTGT	NA	False	NA	55	True	AATAGA	-19	NA	31321851	31208622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_31208966_31214180_31214242_31217135_31217175_31219007_31219023_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ENSMUST00000213605.2	chr9	+	519	4	FSM	ENSMUSG00000001774.9	ENSMUST00000213605.2	519	4	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_1	89.2785901919753	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCGTGTATTTTCCTTTG	8546	False	NA	NA	False	TATAAA	-16	NA	18203601	18213578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321
ENSMUST00000213620.2	chr10	-	1442	7	FSM	ENSMUSG00000075232.7	ENSMUST00000213620.2	1442	7	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_2	51.8183258016784	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATGAAGAAGAAAAAAC	NA	False	NA	NA	False	AAGAAA	-27	NA	40178182	40165319	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_40165466_40166113_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744
ENSMUST00000213639.2	chr10	-	827	6	FSM	ENSMUSG00000000296.9	ENSMUST00000213639.2	827	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	219.239230066154	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAATAGACAACCTGG	NA	False	NA	25	True	NA	NA	NA	31321793	31208652	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_31208966_31214180_31214242_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ENSMUST00000213665.2	chr9	-	801	3	FSM	ENSMUSG00000074476.7	ENSMUST00000213665.2	801	3	0	0	0	0	multi-exon	FALSE	canonical	3	2257	junction_1	11	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCGTTCATTGATTTATCT	NA	False	NA	-20	True	ATTAAA	-14	NA	21669115	21667397	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21667592_21668412_21668490_21668585
ENSMUST00000213683.2	chr9	+	1107	7	FSM	ENSMUSG00000035443.11	ENSMUST00000213683.2	1107	7	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_6	186.06510210736	1895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAAGTGTTTTCTTCTAA	NA	False	NA	36	True	AATAAA	-17	NA	26911015	26918632	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096_26918248_26918453
ENSMUST00000213745.2	chr9	+	1494	13	FSM	ENSMUSG00000036768.7	ENSMUST00000213745.2	1494	13	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_8	59.999768518072	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGGAAAAATTTATTCA	NA	False	NA	NA	False	AATAGA	-32	NA	122780129	122815548	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_122780218_122788181_122788225_122788871_122789056_122792544_122792622_122795013_122795052_122800753_122800852_122804713_122804894_122806904_122807115_122808450_122808661_122808804_122808928_122813864_122813989_122815209_122815287_122815506
ENSMUST00000213747.2	chr9	-	935	4	FSM	ENSMUSG00000032112.11	ENSMUST00000213747.2	935	4	0	0	0	0	multi-exon	FALSE	canonical	3	851	junction_3	13.0213499897497	3226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGCATTCAGTGAATATAA	1967	False	NA	53	True	NA	NA	NA	44318403	44314994	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_44315396_44315630_44315758_44316539_44316644_44318100
ENSMUST00000213763.2	chr9	+	1216	12	FSM	ENSMUSG00000031939.17	ENSMUST00000213763.2	1216	12	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_9	145.029663537447	2026	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACCTTTTATAGTT	9118	False	NA	-1	True	NA	NA	NA	15217555	15228266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
ENSMUST00000213770.2	chr9	+	775	7	FSM	ENSMUSG00000035443.11	ENSMUST00000213770.2	775	7	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_6	112.305634567263	3376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGTTGGAAGTGTTTTC	NA	False	NA	30	True	AATAAA	-11	NA	26911005	26918626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
ENSMUST00000213815.2	chr9	-	1419	5	FSM	ENSMUSG00000001348.16	ENSMUST00000213815.2	1419	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	92.7425873048623	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCCAGAATGGGTGTGT	9074	False	NA	-30	True	AATAAA	-10	NA	22042949	22038033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22042796
ENSMUST00000213866.2	chr11	-	1366	11	FSM	ENSMUSG00000018593.14	ENSMUST00000213866.2	1366	11	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_10	199.894497172884	1329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	3466	False	NA	NA	False	AATACA	-28	NA	55311116	55286246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613_55310682_55310904
ENSMUST00000213874.2	chr9	+	4109	24	FSM	ENSMUSG00000032267.9	ENSMUST00000213874.2	4109	24	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_12	166.491369690667	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTAGCATGACCCTTT	NA	False	NA	13	True	AATAAA	-19	NA	48896713	48953810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935280_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
ENSMUST00000213913.2	chr9	+	831	7	FSM	ENSMUSG00000004096.10	ENSMUST00000213913.2	831	7	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	320.421423891863	9255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATCAATTTGACTTTTT	NA	False	NA	13	True	ATTAAA	-13	NA	14411942	14421661	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_14412040_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
ENSMUST00000214072.2	chr9	-	1941	7	FSM	ENSMUSG00000032299.11	ENSMUST00000214072.2	1941	7	0	0	0	0	multi-exon	FALSE	canonical	3	898	junction_5	106.241470245851	5436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGGTCTTGCTTGCTTTT	6331	False	NA	0	True	AATAAA	-19	NA	57065561	57062318	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350
ENSMUST00000214107.2	chr10	-	555	2	FSM	ENSMUSG00000111753.2	ENSMUST00000214107.2	555	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	35361392	35354822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_35355139_35361153
ENSMUST00000214136.2	chr9	+	1570	8	FSM	ENSMUSG00000032279.12	ENSMUST00000214136.2	1570	8	0	0	0	0	multi-exon	FALSE	canonical	3	1827	junction_2	68.917874817697	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAATCCATAATGAATGA	NA	False	NA	46	True	AATAAA	-13	NA	54502377	54511220	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ENSMUST00000214208.2	chr9	+	1250	10	FSM	ENSMUSG00000023345.18	ENSMUST00000214208.2	1250	10	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_8	93.1042161329356	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCAGTCTGGGATTGGGT	31	False	NA	20	True	AATAAA	-32	NA	106160082	106227089	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106207099_106207216_106226880
ENSMUST00000214275.2	chr9	-	1284	14	FSM	ENSMUSG00000023262.14	ENSMUST00000214275.2	1284	14	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_11	137.635441630778	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCTTAATACTGTGGACA	NA	False	NA	-16	True	AATAAA	-18	NA	106315387	106310188	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106314087_106314153_106314827_106314937_106315331
ENSMUST00000214285.2	chr9	-	1213	3	FSM	ENSMUSG00000032180.12	ENSMUST00000214285.2	1213	3	0	0	0	0	multi-exon	FALSE	canonical	2	30	junction_2	267.5	1673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGTGCCTGGTGACTGGG	NA	False	NA	-7	True	AATAAA	-17	NA	21421483	21418852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21419688_21420226_21420411_21421289
ENSMUST00000214458.2	chr9	+	853	1	FSM	ENSMUSG00000035443.11	ENSMUST00000214458.2	853	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	98	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAATGCCT	NA	False	NA	NA	False	NA	NA	NA	26911023	26911876	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_26911000_26911900
ENSMUST00000214569.2	chr9	-	879	4	FSM	ENSMUSG00000040883.19	ENSMUST00000214569.2	879	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	104.295520304352	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGGGCTCTGCCTTGTGG	NA	False	NA	-90	True	NA	NA	NA	21838319	21832388	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21837970
ENSMUST00000214576.2	chr9	-	1013	4	FSM	ENSMUSG00000032180.12	ENSMUST00000214576.2	1013	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	250.551835399827	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCCCCCCACCCTCCA	NA	False	NA	NA	False	NA	NA	NA	21421530	21419162	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21419688_21420226_21420411_21420584_21420648_21421289
ENSMUST00000214644.2	chr10	-	1103	5	FSM	ENSMUSG00000000296.9	ENSMUST00000214644.2	1103	5	0	0	0	0	multi-exon	FALSE	canonical	3	404	junction_1	42.7346463656832	1540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCTGGATCTTTTATTT	NA	False	NA	-4	True	ATTAAA	-16	NA	31321850	31208372	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_31208966_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ENSMUST00000214685.2	chr11	-	1269	10	FSM	ENSMUSG00000018593.14	ENSMUST00000214685.2	1269	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_9	224.039568815559	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	573	False	NA	NA	False	AATACA	-28	NA	55314009	55286246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55313826
ENSMUST00000214828.2	chr8	-	3301	23	FSM	ENSMUSG00000037300.20	ENSMUST00000214828.2	3301	23	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_6	114.790718661872	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGTGGTCAGTTTGGTCGT	NA	False	NA	-9	True	ATTAAA	-15	NA	125448717	125398071	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403187_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125424732_125424826_125426394_125426461_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ENSMUST00000214845.2	chr9	-	461	4	FSM	ENSMUSG00000110834.2	ENSMUST00000214845.2	461	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	43.70608907489	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAATCCCTATGAGTACT	NA	False	NA	NA	False	NA	NA	NA	124044769	124032987	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_124033196_124033755_124033817_124033999_124034127_124044704
ENSMUST00000214864.2	chr9	-	1662	5	FSM	ENSMUSG00000032175.12	ENSMUST00000214864.2	1662	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	20.5106679559687	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGGGCCTTACTCTGTT	NA	False	NA	NA	False	NA	NA	NA	21042539	21034754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21035855_21036159_21036278_21038419_21038640_21039855_21040008_21042467
ENSMUST00000214910.2	chr9	+	774	5	FSM	ENSMUSG00000035443.11	ENSMUST00000214910.2	774	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	235.013829380315	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTATCATTGAGTTTTA	NA	False	NA	3	True	AATAAA	-17	NA	26911005	26917227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_26911062_26911246_26911353_26914892_26915061_26916441_26916511_26916852
ENSMUST00000214923.2	chr9	-	1867	6	FSM	ENSMUSG00000042396.11	ENSMUST00000214923.2	1867	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	182.483314305719	1755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAAGAGAATGTGTCTC	NA	False	NA	-12	True	ATTAAA	-4	NA	48406594	48400008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48405582_48405688_48406454
ENSMUST00000215050.2	chr9	+	2050	8	FSM	ENSMUSG00000032123.6	ENSMUST00000215050.2	2050	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	96.7247303919104	610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAGATCACAGTGCTCC	3802	False	NA	NA	False	AATAAA	-26	NA	44238169	44245191	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44238503_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
ENSMUST00000215063.2	chr9	+	570	2	FSM	ENSMUSG00000025794.10	ENSMUST00000215063.2	570	2	0	0	0	0	multi-exon	FALSE	canonical	3	15430	junction_1	0	546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	737	False	NA	19	True	AATAAA	-23	NA	120402654	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_120402884_120403160
ENSMUST00000215077.2	chr9	+	1028	2	FSM	ENSMUSG00000001014.7	ENSMUST00000215077.2	1028	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGCCTTACGGTTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	20940749	20941890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_20941120_20941232
ENSMUST00000215088.2	chr6	-	1484	3	FSM	ENSMUSG00000032641.19	ENSMUST00000215088.2	1484	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	14.5	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTGAGAATTGATTTA	NA	False	NA	-23	True	ATTAAA	-12	NA	134864748	134846124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_134847407_134863853_134863900_134864592
ENSMUST00000215151.2	chr9	-	129	1	FSM	ENSMUSG00000111228.2	ENSMUST00000215151.2	129	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	270	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGACAGCTACAGTGTAC	NA	False	NA	NA	False	NA	NA	NA	75427784	75427655	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_75427700_75427800
ENSMUST00000215233.2	chr9	-	2363	12	FSM	ENSMUSG00000032316.9	ENSMUST00000215233.2	2363	12	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_9	49.1934955049954	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCCTGGTACCAGTGTG	9814	False	NA	-11	True	AATAAA	-19	NA	57672397	57657993	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
ENSMUST00000215300.2	chr9	-	605	5	FSM	ENSMUSG00000038412.9	ENSMUST00000215300.2	605	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	1102.00691921603	1025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACGGTATTGAATATTG	NA	False	NA	-25	True	AATAAA	-20	NA	121686628	121678603	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_121678756_121679253_121679389_121681556_121681676_121685503_121685652_121686577
ENSMUST00000215307.2	chr9	+	3776	19	FSM	ENSMUSG00000032512.8	ENSMUST00000215307.2	3776	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	68.0088955692063	1084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTGTGCTGGACATGTT	NA	False	NA	30	True	AATAAA	-18	NA	119723971	119755653	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745858_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774
ENSMUST00000215356.2	chr9	+	456	4	FSM	ENSMUSG00000043773.6	ENSMUST00000215356.2	456	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	3.2659863237109	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGTGCTTGTGTCCTTTT	7151	False	NA	NA	False	ATTAAA	-23	NA	121767181	121771063	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_121767229_121768484_121768568_121769749_121769877_121770864
ENSMUST00000215420.2	chr9	+	2128	9	FSM	ENSMUSG00000032114.10	ENSMUST00000215420.2	2128	9	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	8.7740740252177	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAACAGTCAGTGGCTCA	NA	False	NA	NA	False	AATAAA	-13	NA	44308148	44314257	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44308289_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
ENSMUST00000215515.2	chr10	-	857	6	FSM	ENSMUSG00000000296.9	ENSMUST00000215515.2	857	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	227.386543137451	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGTTCTGAATTCTTGT	NA	False	NA	55	True	AATAGA	-19	NA	31321815	31208622	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_31208966_31217135_31217175_31222606_31222709_31233867_31234017_31255210_31255327_31321707
ENSMUST00000215568.2	chr9	+	728	2	FSM	ENSMUSG00000032518.7	ENSMUST00000215568.2	728	2	0	0	0	0	multi-exon	FALSE	canonical	3	2998	junction_1	0	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGAGCTGACAGAGGCAC	NA	False	NA	NA	False	NA	NA	NA	119957871	119959440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_119958343_119959183
ENSMUST00000215610.2	chr9	+	703	4	FSM	ENSMUSG00000009927.10	ENSMUST00000215610.2	703	4	0	0	0	0	multi-exon	FALSE	canonical	3	5317	junction_3	3495.27194936245	3243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGGTGCATCTGTTTCCT	NA	False	NA	94	True	AATAAA	-19	NA	44319009	44321491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44319381_44319982_44320167_44321250_44321350_44321442
ENSMUST00000215619.2	chr9	-	1423	2	FSM	ENSMUSG00000096472.3	ENSMUST00000215619.2	1423	2	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	0	1251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGACTTCAGATTTAGG	NA	False	NA	NA	False	ATTAAA	-12	NA	21202604	21199705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21200629_21202104
ENSMUST00000215706.2	chr9	+	1272	5	FSM	ENSMUSG00000032264.10	ENSMUST00000215706.2	1272	5	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_4	30.2189923723476	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACATACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48967081	48973305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_48967088_48968942_48969078_48971869_48971972_48972167_48972246_48972354
ENSMUST00000215821.2	chr9	-	898	4	FSM	ENSMUSG00000058587.10	ENSMUST00000215821.2	898	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	245.142588892442	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGGATTAATTTTGGTA	NA	False	NA	NA	False	NA	NA	NA	75466876	75428181	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_75428661_75436650_75436808_75439707_75439875_75466781
ENSMUST00000215902.2	chr9	+	1800	3	FSM	ENSMUSG00000057982.9	ENSMUST00000215902.2	1800	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	83	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGACCTAACTCTCTCC	740	False	NA	NA	False	NA	NA	NA	22137009	22151391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_22137129_22146315_22146443_22149837
ENSMUST00000215916.2	chr9	-	2956	4	FSM	ENSMUSG00000032515.9	ENSMUST00000215916.2	2956	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	1.69967317119759	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGTCTTCTTGGTGA	NA	False	NA	0	True	AATAAA	-15	NA	119806401	119800230	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067
ENSMUST00000216057.2	chr9	-	627	4	FSM	ENSMUSG00000074476.7	ENSMUST00000216057.2	627	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	994.029174622154	917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCGTTCATTGATTTAT	NA	False	NA	-22	True	ATTAAA	-12	NA	21671599	21667399	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21667592_21668585_21668691_21668980_21669126_21671414
ENSMUST00000216313.2	chr11	-	1304	12	FSM	ENSMUSG00000018593.14	ENSMUST00000216313.2	1304	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	267.658904683178	1357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	3431	False	NA	NA	False	AATACA	-28	NA	55311151	55286246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613_55310682_55310904_55311027_55311123
ENSMUST00000216329.2	chr9	-	1559	3	FSM	ENSMUSG00000051705.14	ENSMUST00000216329.2	1559	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCGGGTGTGTGGTGCA	6440	False	NA	-22	True	AATAAA	-15	NA	59657910	59643752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_59645152_59657544_59657655_59657860
ENSMUST00000216344.2	chr9	+	2228	18	FSM	ENSMUSG00000003402.15	ENSMUST00000216344.2	2228	18	0	0	0	0	multi-exon	TRUE	canonical	3	150	junction_1	191.361611709314	1062	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	20	True	AATAAA	-16	NA	21914101	21925518	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_21914389_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
ENSMUST00000216365.2	chr9	-	1665	7	FSM	ENSMUSG00000063849.7	ENSMUST00000216365.2	1665	7	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	15.2059929706094	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGTGTCCTTCTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	57347390	57321243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_57322010_57322368_57322756_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57347352
ENSMUST00000216543.2	chr10	+	456	2	FSM	ENSMUSG00000045886.8	ENSMUST00000216543.2	456	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTCGGTGGTCATGGTGT	NA	False	NA	NA	False	AATAAA	-45	NA	43400101	43400641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_43400172_43400255
ENSMUST00000216594.2	chr9	+	1841	8	FSM	ENSMUSG00000032397.8	ENSMUST00000216594.2	1841	8	0	0	0	0	multi-exon	FALSE	canonical	3	410	junction_1	719.77354715471	12395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAAAGTTGAGGCTG	9565	False	NA	NA	False	NA	NA	NA	64188884	64212706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_64188935_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
ENSMUST00000216730.2	chr9	+	882	1	FSM	ENSMUSG00000036768.7	ENSMUST00000216730.2	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	108	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AAAAAG	-39	NA	122780146	122781028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_122780100_122781000
ENSMUST00000216755.2	chr9	+	836	4	FSM	ENSMUSG00000032060.11	ENSMUST00000216755.2	836	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	6.0184900284226	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTCGTGTTTGCAAAC	NA	False	NA	NA	False	AATAAA	-20	NA	50664319	50667936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_50664396_50664485_50664778_50665811_50665935_50667591
ENSMUST00000216760.2	chr9	-	665	2	FSM	ENSMUSG00000032436.18	ENSMUST00000216760.2	665	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGCTGCAGGCCTGGGG	NA	False	NA	NA	False	NA	NA	NA	114610910	114599788	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_114600279_114610735
ENSMUST00000216785.2	chr9	-	1723	10	FSM	ENSMUSG00000056167.9	ENSMUST00000216785.2	1723	10	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_3	40.9103204703612	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGGAATCTAAGACCTCA	NA	False	NA	NA	False	NA	NA	NA	114469252	114446595	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
ENSMUST00000216825.2	chr9	+	1210	11	FSM	ENSMUSG00000031939.17	ENSMUST00000216825.2	1210	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_10	180.996160180265	1246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACCTTTTATAGTT	NA	False	NA	-1	True	NA	NA	NA	15219041	15228266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226773_15228184
ENSMUST00000216841.2	chr9	+	1426	11	FSM	ENSMUSG00000055720.11	ENSMUST00000216841.2	1426	11	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	88.2161549830869	1235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCGTGTCCAGTGCT	NA	False	NA	14	True	AATATA	-15	NA	57818316	57837249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_57818455_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
ENSMUST00000216867.2	chr9	+	577	4	FSM	ENSMUSG00000009927.10	ENSMUST00000216867.2	577	4	0	0	0	0	multi-exon	FALSE	canonical	3	11233	junction_1	829.827692958002	4909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAATGGGTGCATCTGT	NA	False	NA	89	True	AATAAA	-14	NA	44318993	44321486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_44319055_44319284_44319381_44319982_44320167_44321250
ENSMUST00000216877.2	chr9	+	2236	8	FSM	ENSMUSG00000032333.7	ENSMUST00000216877.2	2236	8	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	134.059079269902	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAGTGCAGCTGGCTG	NA	False	NA	11	True	AATAAA	-22	NA	58160474	58169803	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_58160683_58162216_58162324_58162816_58163097_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
ENSMUST00000216921.2	chr9	-	1877	4	FSM	ENSMUSG00000031996.18	ENSMUST00000216921.2	1877	4	0	0	0	0	multi-exon	FALSE	canonical	3	1185	junction_2	69.5621225156974	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACCTTGTGTTCCTGAC	NA	False	NA	-11	True	AATAAA	-17	NA	31064941	31060854	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709
ENSMUST00000216990.2	chr9	+	598	4	FSM	ENSMUSG00000025794.10	ENSMUST00000216990.2	598	4	0	0	0	0	multi-exon	FALSE	canonical	2	573	junction_1	6865.05966632645	2507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	19	True	AATAAA	-23	NA	120401160	120403501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_120401264_120402641_120402742_120402829_120402884_120403160
ENSMUST00000217093.2	chr9	-	1663	4	FSM	ENSMUSG00000051705.14	ENSMUST00000217093.2	1663	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	6.59966329107444	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCGGGTGTGTGGTGCA	6429	False	NA	-22	True	AATAAA	-15	NA	59657921	59643752	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_59645152_59647222_59647316_59657544_59657655_59657860
ENSMUST00000217121.2	chr9	-	914	2	FSM	ENSMUSG00000039542.17	ENSMUST00000217121.2	914	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8520	False	NA	NA	False	NA	NA	NA	49710222	49552889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_49553559_49709977
ENSMUST00000217150.2	chr9	-	951	4	FSM	ENSMUSG00000079677.3	ENSMUST00000217150.2	951	4	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_3	55.4276304943863	2818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCCGACATGTTTTGTG	NA	False	NA	-8	True	AATAAA	-11	NA	20984910	20978816	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_20979222_20979325_20979414_20984370_20984478_20984559
ENSMUST00000217159.2	chr9	-	552	2	FSM	ENSMUSG00000038086.5	ENSMUST00000217159.2	552	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTGCTGCTTCTGT	NA	False	NA	-7	True	AATAAA	-16	NA	50663654	50662377	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_50662752_50663476
ENSMUST00000217163.2	chr9	-	1185	4	FSM	ENSMUSG00000032112.11	ENSMUST00000217163.2	1185	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	146.917210246678	3283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTTTCTCTCCTAACTG	1741	False	NA	-10	True	AATAAA	-15	NA	44318629	44315057	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_44315758_44316539_44316644_44318100_44318276_44318423
ENSMUST00000217236.2	chr9	-	1003	5	FSM	ENSMUSG00000032065.7	ENSMUST00000217236.2	1003	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	10.8483869768736	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACCTGGCTATTTTTTTA	6962	False	NA	NA	False	AATAAA	-15	NA	50472625	50468118	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_50468792_50469548_50469601_50469686_50469799_50470519_50470586_50472525
ENSMUST00000217317.2	chr9	+	1599	6	FSM	ENSMUSG00000032518.7	ENSMUST00000217317.2	1599	6	0	0	0	0	multi-exon	FALSE	canonical	3	2998	junction_2	1090.74407630755	90255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956909	119960625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
ENSMUST00000217340.2	chr10	-	365	2	FSM	ENSMUSG00000069682.7	ENSMUST00000217340.2	365	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGGAAAAAAAAAATCAATAG	NA	False	NA	-10	True	AATAAA	-19	NA	29575277	29574743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_29575071_29575239
ENSMUST00000217356.2	chr9	+	1101	7	FSM	ENSMUSG00000032518.7	ENSMUST00000217356.2	1101	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1986.85748524313	145133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956854	119960625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959110_119959430_119959833_119959963_119960065_119960232_119960465
ENSMUST00000217381.2	chr9	+	1789	8	FSM	ENSMUSG00000066705.8	ENSMUST00000217381.2	1789	8	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_2	116.890320124361	5048	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	368	False	NA	22	True	AATAAA	-26	NA	45281482	45307457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
ENSMUST00000217382.2	chr9	-	1696	3	FSM	ENSMUSG00000074476.7	ENSMUST00000217382.2	1696	3	0	0	0	0	multi-exon	FALSE	canonical	3	1938	junction_2	208.5	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTTTGTCTGCATGTGT	NA	False	NA	0	True	NA	NA	NA	21671578	21667303	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21668691_21668980_21669126_21671414
ENSMUST00000217445.2	chr9	-	893	1	FSM	ENSMUSG00000066839.13	ENSMUST00000217445.2	893	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGTT	5888	False	NA	NA	False	NA	NA	NA	21996731	21995838	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21995800_21996700
ENSMUST00000217475.2	chr9	+	1117	4	FSM	ENSMUSG00000032060.11	ENSMUST00000217475.2	1117	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	7.40870359029762	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTCGTGTTTGCAAAC	NA	False	NA	NA	False	AATAAA	-20	NA	50662624	50667936	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_50662877_50664380_50664778_50665811_50665935_50667591
ENSMUST00000217484.2	chr9	+	2580	11	FSM	ENSMUSG00000032279.12	ENSMUST00000217484.2	2580	11	0	0	0	0	multi-exon	FALSE	canonical	3	1656	junction_1	98.4146330583008	5944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGGCGTTTGCATTCTC	NA	False	NA	35	True	AATAAA	-15	NA	54493617	54511945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
ENSMUST00000217537.2	chr10	-	2526	6	FSM	ENSMUSG00000019837.9	ENSMUST00000217537.2	2526	6	0	0	0	0	multi-exon	FALSE	canonical	3	403	junction_5	105.423716496811	2944	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATAGTTGATGGTTGCA	8586	False	NA	-31	True	AATAAA	-15	NA	40133667	40123698	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133574
ENSMUST00000217641.2	chr9	-	3462	16	FSM	ENSMUSG00000031996.18	ENSMUST00000217641.2	3462	16	0	0	0	0	multi-exon	FALSE	canonical	3	473	junction_10	230.67090554872	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8743	False	NA	-9	True	AATAAA	-19	NA	31123083	31060852	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
ENSMUST00000217643.2	chr9	-	1447	6	FSM	ENSMUSG00000001348.16	ENSMUST00000217643.2	1447	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	116.082039954508	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCCAGAATGGGTGTGT	8896	False	NA	-30	True	AATAAA	-10	NA	22043127	22038033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22041818_22041905_22043032
ENSMUST00000217660.2	chr12	-	1486	7	FSM	ENSMUSG00000020993.10	ENSMUST00000217660.2	1486	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	143.962668772151	1273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGAAAGTTTATTTTAAT	NA	False	NA	-5	True	NA	NA	NA	59108258	59089913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_59090463_59091038_59091133_59094908_59094993_59097053_59097172_59098426_59098495_59106041_59106298_59107941
ENSMUST00000217685.2	chr10	-	666	3	FSM	ENSMUSG00000025353.6	ENSMUST00000217685.2	666	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	430	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGTATATTTTTCTTAA	NA	False	NA	-63	True	NA	NA	NA	128657460	128654420	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128654885_128655822_128655975_128657410
ENSMUST00000217733.2	chr10	-	1668	5	FSM	ENSMUSG00000090841.3	ENSMUST00000217733.2	1668	5	0	0	0	0	multi-exon	FALSE	canonical	3	2189	junction_2	245.142305610435	1138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTTTCTTTCTTT	8245	False	NA	-5	True	AATAAA	-20	NA	128329723	128326729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
ENSMUST00000217777.2	chr10	-	455	5	FSM	ENSMUSG00000062981.6	ENSMUST00000217777.2	455	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	1680.921826707	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGGAAAAAATAAAAATACCC	NA	False	NA	-37	True	NA	NA	NA	95337789	95316695	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_95316840_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUST00000217781.2	chr10	-	646	3	FSM	ENSMUSG00000035215.10	ENSMUST00000217781.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	3	4365	junction_1	93.5	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGATCTTCCTTCTATGGG	NA	False	NA	NA	False	NA	NA	NA	80690857	80688766	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80688935_80689591_80689664_80690451
ENSMUST00000217811.2	chr10	+	1316	7	FSM	ENSMUSG00000009092.6	ENSMUST00000217811.2	1316	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	5.48988969733353	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGACTCAATATGTTAGT	NA	False	NA	NA	False	NA	NA	NA	75729248	75731775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_75729352_75729455_75729519_75729603_75729678_75729800_75729895_75730265_75730462_75730872_75730964_75731080
ENSMUST00000217874.2	chr10	+	329	2	FSM	ENSMUSG00000112639.2	ENSMUST00000217874.2	329	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTCTCTTTTTAAATTT	NA	False	NA	NA	False	AATAAA	-13	NA	126906349	126906970	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_126906494_126906785
ENSMUST00000217908.2	chr10	+	1350	15	FSM	ENSMUSG00000058799.17	ENSMUST00000217908.2	1350	15	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_10	363.653962004586	1228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTCATTTACTTACAGC	NA	False	NA	-11	True	NA	NA	NA	111309102	111331980	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
ENSMUST00000217912.2	chr10	+	553	1	FSM	ENSMUSG00000112474.2	ENSMUST00000217912.2	553	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1449	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTCAGCATAAAATAAAGG	NA	False	NA	NA	False	AAGAAA	-33	NA	7408355	7408908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_7408400_7408900
ENSMUST00000217932.2	chr12	-	457	3	FSM	ENSMUSG00000112819.2	ENSMUST00000217932.2	457	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	2.5	1609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAACTGTCTTGGCTACA	NA	False	NA	NA	False	NA	NA	NA	4603785	4602545	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_4602746_4603013_4603176_4603690
ENSMUST00000217969.2	chr10	-	608	6	FSM	ENSMUSG00000090841.3	ENSMUST00000217969.2	608	6	0	0	0	0	multi-exon	FALSE	canonical	2	43	junction_4	956.330152196405	23466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTTCTTTCTTTCT	8242	False	NA	-7	True	AATAAA	-18	NA	128329726	128326731	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328579_128329407_128329436_128329677
ENSMUST00000218036.2	chr10	-	772	3	FSM	ENSMUSG00000035278.10	ENSMUST00000218036.2	772	3	0	0	0	0	multi-exon	FALSE	canonical	3	1230	junction_2	7.5	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80633722	80631932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80632357_80632424_80632657_80633606
ENSMUST00000218054.3	chr12	-	1856	2	FSM	ENSMUSG00000093847.3	ENSMUST00000218054.3	1856	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	289	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATGCAGTCTGATGGTCT	NA	False	NA	NA	False	AATAAA	-31	NA	88290796	88286891	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_88288562_88290610
ENSMUST00000218055.2	chr10	-	2180	11	FSM	ENSMUSG00000039531.9	ENSMUST00000218055.2	2180	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_10	16.213882940246	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGTTTCTTGTCTAT	NA	False	NA	-1	True	AATAAA	-20	NA	33827255	33795137	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827126
ENSMUST00000218095.2	chr10	+	1622	3	FSM	ENSMUSG00000097412.3	ENSMUST00000218095.2	1622	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	95.5	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTATGTGTATGAGT	NA	False	NA	1	True	AGTAAA	-10	NA	86521388	86525818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_86521473_86521743_86521861_86524397
ENSMUST00000218107.2	chr10	-	584	6	FSM	ENSMUSG00000061983.8	ENSMUST00000218107.2	584	6	0	0	0	0	multi-exon	FALSE	canonical	3	2594	junction_5	774.773670177298	493919	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663173	23661080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891_23662943_23663053
ENSMUST00000218119.2	chr10	-	609	4	FSM	ENSMUSG00000035215.10	ENSMUST00000218119.2	609	4	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_3	2094.66343093321	10874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTCCCTCCCTTCCTGCT	NA	False	NA	-23	True	AATAAA	-15	NA	80691027	80688668	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80688935_80689591_80689664_80690451_80690543_80690847
ENSMUST00000218127.2	chr10	-	691	7	FSM	ENSMUSG00000090841.3	ENSMUST00000218127.2	691	7	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	1160.32375750142	47464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTTTCTTTCTTT	8242	False	NA	-5	True	AATAAA	-20	NA	128329726	128326729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128326903_128327588_128327634_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
ENSMUST00000218142.2	chr10	-	474	4	FSM	ENSMUSG00000061983.8	ENSMUST00000218142.2	474	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_3	1924.28809346903	5202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23662700	23661080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522
ENSMUST00000218147.2	chr12	-	788	4	FSM	ENSMUSG00000044408.8	ENSMUST00000218147.2	788	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.63299316185545	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTAGCAGTCTCTTT	NA	False	NA	NA	False	ATTAAA	-8	NA	54703281	54692185	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_54692559_54693142_54693321_54697351_54697457_54703149
ENSMUST00000218149.2	chr10	-	435	2	FSM	ENSMUSG00000020219.8	ENSMUST00000218149.2	435	2	0	0	0	0	multi-exon	FALSE	canonical	3	3722	junction_1	0	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAACTGTTTTCCCTGCCA	5635	False	NA	NA	False	NA	NA	NA	80736616	80735959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80736094_80736315
ENSMUST00000218208.2	chr10	-	1964	12	FSM	ENSMUSG00000004937.7	ENSMUST00000218208.2	1964	12	0	0	0	0	multi-exon	TRUE	canonical	3	688	junction_11	105.465203223192	1435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTCTCTGCTTCCTGT	4772	False	NA	-13	True	AATAAA	-15	NA	80896012	80879910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895961
ENSMUST00000218218.2	chr10	+	1143	4	FSM	ENSMUSG00000064030.16	ENSMUST00000218218.2	1143	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	140.632697320202	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCAGGCTTTGGCTCT	NA	False	NA	NA	False	AATAAA	-16	NA	128584396	128602433	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128584436_128586151_128586207_128601015_128601110_128601478
ENSMUST00000218221.2	chr10	-	460	5	FSM	ENSMUSG00000061983.8	ENSMUST00000218221.2	460	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1861.96017344625	30663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	-18	True	AATAAA	-13	NA	23663115	23661095	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23663053
ENSMUST00000218250.2	chr10	-	1243	1	FSM	ENSMUSG00000039824.5	ENSMUST00000218250.2	1243	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCCACCCCCTCCCACCC	6543	False	NA	NA	False	NA	NA	NA	128331425	128330182	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128330200_128331400
ENSMUST00000218267.2	chr10	-	600	2	FSM	ENSMUSG00000033307.8	ENSMUST00000218267.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	3	12818	junction_1	0	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTTGAGCCTCGCTCCA	NA	False	NA	-107	True	NA	NA	NA	75696026	75695283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_75695378_75695520
ENSMUST00000218275.2	chr10	-	1872	9	FSM	ENSMUSG00000039531.9	ENSMUST00000218275.2	1872	9	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_5	25.4923395356331	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGGTTTTGGTTTCTT	NA	False	NA	-7	True	AATAAA	-14	NA	33825856	33795143	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33816153_33816276_33819645_33819757_33824924_33825495_33825743
ENSMUST00000218286.2	chr10	-	568	4	FSM	ENSMUSG00000053329.8	ENSMUST00000218286.2	568	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	4.98887651569859	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCTGAGTGGCTTGACC	4177	False	NA	NA	False	NA	NA	NA	78005570	78003089	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_78003349_78004642_78004757_78005206_78005260_78005428
ENSMUST00000218311.2	chr14	+	1201	15	FSM	ENSMUSG00000112858.3	ENSMUST00000218311.2	1201	15	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_1	4.37525509460387	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAAAACTGTGTGTGT	NA	False	NA	1	True	ATTAAA	-5	NA	55051597	55091552	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55051743_55053942_55054044_55056993_55057047_55057594_55057670_55075569_55075686_55076681_55076743_55077723_55077753_55079339_55079387_55079595_55079639_55079805_55079867_55080243_55080293_55086123_55086164_55086751_55086847_55087992_55088055_55091328
ENSMUST00000218350.2	chr10	+	429	2	FSM	ENSMUSG00000112028.2	ENSMUST00000218350.2	429	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGTACTCTGACTCATT	NA	False	NA	NA	False	AATAAA	-16	NA	71037574	71040317	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_71037641_71039954
ENSMUST00000218481.2	chr10	-	471	3	FSM	ENSMUSG00000020219.8	ENSMUST00000218481.2	471	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	1786	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGCCGCCCTGAAGTCT	5633	False	NA	NA	False	NA	NA	NA	80736618	80735925	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80736167_80736315_80736385_80736457
ENSMUST00000218557.2	chr10	+	415	3	FSM	ENSMUSG00000112742.2	ENSMUST00000218557.2	415	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	6.5	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAAAAAAAGGCAT	NA	False	NA	NA	False	NA	NA	NA	130378215	130407662	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_130378320_130407161_130407289_130407478
ENSMUST00000218576.2	chr10	-	3092	28	FSM	ENSMUSG00000052798.14	ENSMUST00000218576.2	3092	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	174.862046350179	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGAGTTTTCTCTTATG	NA	False	NA	-4	True	AATAAA	-29	NA	117628569	117586525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117595076_117595238_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610494_117612115_117612195_117613033_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625966_117626371_117626464_117628508
ENSMUST00000218582.2	chr10	+	2795	10	FSM	ENSMUSG00000019891.16	ENSMUST00000218582.2	2795	10	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	48.9166587797331	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTGACTTCTATTTGGC	NA	False	NA	8	True	AATAAA	-18	NA	52109732	52197474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_52109932_52160198_52160334_52162443_52162496_52166946_52167020_52180682_52180817_52187495_52187537_52188909_52188998_52190450_52190501_52193127_52193248_52195571
ENSMUST00000218875.2	chr10	+	3020	12	FSM	ENSMUSG00000032763.12	ENSMUST00000218875.2	3020	12	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_8	17.4725286148956	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5486	False	NA	30	True	AATAAA	-39	NA	78410420	78420336	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297
ENSMUST00000218880.2	chr10	-	2005	11	FSM	ENSMUSG00000039531.9	ENSMUST00000218880.2	2005	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	26.3901496774838	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGTTGGTTTTGGTTTC	NA	False	NA	-9	True	AATAAA	-12	NA	33827191	33795145	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_33795367_33803494_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827126
ENSMUST00000218885.2	chr10	+	2233	15	FSM	ENSMUSG00000032763.12	ENSMUST00000218885.2	2233	15	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_8	19.815990244945	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCCAAGGACTCAGTCACA	5893	False	NA	7	True	AATAAA	-16	NA	78410827	78420313	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
ENSMUST00000218893.2	chr10	-	661	6	FSM	ENSMUSG00000062981.6	ENSMUST00000218893.2	661	6	0	0	0	0	multi-exon	FALSE	canonical	3	2875	junction_5	503.887924046608	16038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCAAGTGTGTATTTCA	NA	False	NA	-11	True	AATAAA	-14	NA	95337802	95316669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332750_95336244_95336385_95337767
ENSMUST00000218897.2	chr10	-	571	4	FSM	ENSMUSG00000035215.10	ENSMUST00000218897.2	571	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	1997.02851479114	3745	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTCCCTTCCTGCTCT	NA	False	NA	-21	True	AATAAA	-17	NA	80691002	80688666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80688935_80689591_80689660_80690451_80690543_80690858
ENSMUST00000218936.2	chr12	-	665	5	FSM	ENSMUSG00000020993.10	ENSMUST00000218936.2	665	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	126.52149026944	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGGTCACCTCAGTAAAG	NA	False	NA	NA	False	NA	NA	NA	59108207	59093856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_59093986_59094908_59094993_59097053_59097172_59098426_59098495_59107941
ENSMUST00000218989.2	chr10	-	527	1	FSM	ENSMUSG00000020137.6	ENSMUST00000218989.2	527	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	138	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTACTCTTTTATTTTT	2360	False	NA	NA	False	ATTAAA	-21	NA	115220348	115219821	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_115219800_115220300
ENSMUST00000219019.2	chr10	-	677	6	FSM	ENSMUSG00000062981.6	ENSMUST00000219019.2	677	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_3	1931.1881316951	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTGTGTATTTCATTA	NA	False	NA	-8	True	AATAAA	-17	NA	95336385	95316666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_95316840_95326107_95326275_95326396_95326444_95329492_95329578_95332685_95332750_95336244
ENSMUST00000219036.2	chr10	-	864	7	FSM	ENSMUSG00000034024.9	ENSMUST00000219036.2	864	7	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_6	772.545575786093	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTGTATGCCGGAACGT	NA	False	NA	NA	False	AAGAAA	-40	NA	116899280	116896550	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899064
ENSMUST00000219037.2	chr10	+	1383	6	FSM	ENSMUSG00000025381.4	ENSMUST00000219037.2	1383	6	0	0	0	0	multi-exon	FALSE	canonical	3	1395	junction_2	667.271938567778	18459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTTATTCAGTGTGTAC	NA	False	NA	NA	False	NA	NA	NA	128158327	128163422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128158645_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
ENSMUST00000219062.2	chr12	-	1118	3	FSM	ENSMUSG00000112880.2	ENSMUST00000219062.2	1118	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	3	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAACACTAACCAAAAC	NA	False	NA	NA	False	NA	NA	NA	80992170	80989446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_80989717_80989815_80990004_80991510
ENSMUST00000219069.2	chr12	+	605	2	FSM	ENSMUSG00000051721.7	ENSMUST00000219069.2	605	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	999	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACATGGTGGTGTGTGCC	NA	False	NA	NA	False	AATAAA	-15	NA	4893327	4899343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_4893452_4898862
ENSMUST00000219143.2	chr10	+	1365	13	FSM	ENSMUSG00000058799.17	ENSMUST00000219143.2	1365	13	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_10	384.309843167665	1656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTTTTTTTTATTTCA	NA	False	NA	4	True	AATAAA	-21	NA	111309141	111330870	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655
ENSMUST00000219215.2	chr10	-	1051	4	FSM	ENSMUSG00000025353.6	ENSMUST00000219215.2	1051	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	384.57248991575	4584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTCATAATGCTGGGGA	NA	False	NA	7	True	AATAAA	-45	NA	128657475	128654350	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128654885_128655822_128655975_128656129_128656430_128657410
ENSMUST00000219226.2	chr10	+	1357	2	FSM	ENSMUSG00000038774.10	ENSMUST00000219226.2	1357	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAGAAAAAAGAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	50480846	50495032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_50480979_50493807
ENSMUST00000219236.2	chr10	-	692	7	FSM	ENSMUSG00000090841.3	ENSMUST00000219236.2	692	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	1170.06704461278	34675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTTCTTTCTTTCT	8252	False	NA	-7	True	AATAAA	-18	NA	128329716	128326731	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128326903_128327158_128327217_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
ENSMUST00000219239.2	chr10	-	2238	12	FSM	ENSMUSG00000025403.6	ENSMUST00000219239.2	2238	12	0	0	0	0	multi-exon	FALSE	canonical	3	625	junction_11	417.657853565126	2601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCTGCTTCTGTTTGATC	NA	False	NA	-5	True	AATGAA	-15	NA	127358255	127352991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127358156
ENSMUST00000219273.2	chr10	+	676	2	FSM	ENSMUSG00000052291.9	ENSMUST00000219273.2	676	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTCGCACCGAAAACTTC	NA	False	NA	NA	False	AATAAA	-34	NA	116417480	116419419	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_116417628_116418890
ENSMUST00000219317.2	chr10	+	1109	9	FSM	ENSMUSG00000025351.15	ENSMUST00000219317.2	1109	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	1695.03832921265	40143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGGTCTCAGTTTATC	NA	False	NA	35	True	ATTAAA	-27	NA	128736857	128748691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128737005_128744769_128744922_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
ENSMUST00000219374.2	chr10	-	1852	12	FSM	ENSMUSG00000061032.10	ENSMUST00000219374.2	1852	12	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_11	269.317686996093	5786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGCTTCTCCCATTTTT	NA	False	NA	-17	True	AATAAA	-21	NA	78248826	78236217	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_78236819_78237683_78237801_78238258_78238279_78238443_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399_78241530_78244246_78244309_78244967_78245054_78246799_78246858_78248653
ENSMUST00000219400.2	chr10	-	3005	21	FSM	ENSMUSG00000020115.4	ENSMUST00000219400.2	3005	21	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_17	34.6538598138793	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAAGGCTTGTGTGCTTTT	3888	False	NA	-5	True	AATAAA	-17	NA	121422682	121382364	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_121383094_121387155_121387228_121387391_121387499_121388104_121388202_121388312_121388415_121388933_121388974_121389649_121389727_121389807_121389930_121391891_121391971_121393106_121393209_121395751_121395844_121396145_121396205_121397481_121397679_121399830_121400011_121403933_121404045_121406535_121406697_121407747_121407930_121412182_121412309_121414484_121414626_121420100_121420247_121422599
ENSMUST00000219435.2	chr10	+	405	2	FSM	ENSMUSG00000049422.8	ENSMUST00000219435.2	405	2	0	0	0	0	multi-exon	FALSE	canonical	3	16591	junction_1	0	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCTGCTGTGTGCCCAT	8593	False	NA	20	True	ATTAAA	-17	NA	75773053	75773578	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_75773289_75773408
ENSMUST00000219442.3	chr10	+	3531	14	FSM	ENSMUSG00000020250.12	ENSMUST00000219442.3	3531	14	0	0	0	0	multi-exon	TRUE	canonical	1	267	junction_2	143.143532881919	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGCGTGCCTTCTGACTGA	NA	False	NA	13	True	AATAAA	-14	NA	82696134	82733544	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_82696465_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
ENSMUST00000219523.2	chr10	+	1497	6	FSM	ENSMUSG00000006731.11	ENSMUST00000219523.2	1497	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	9.6	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCAATTTTTTTGTTTTG	507	False	NA	NA	False	ATTAAA	-24	NA	127001246	127004392	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569
ENSMUST00000219527.2	chr10	-	3862	25	FSM	ENSMUSG00000020074.8	ENSMUST00000219527.2	3862	25	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	85.6392222576133	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGTCTTTTATTGAAGT	NA	False	NA	1	True	AATAAA	-35	NA	62628065	62580240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
ENSMUST00000219554.2	chr10	-	790	5	FSM	ENSMUSG00000090841.3	ENSMUST00000219554.2	790	5	0	0	0	0	multi-exon	FALSE	canonical	3	2189	junction_3	229.335998046534	41034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTTTCTTTCTTT	8340	False	NA	-5	True	AATAAA	-20	NA	128329628	128326729	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328615_128329407
ENSMUST00000219583.2	chr10	+	670	3	FSM	ENSMUSG00000112188.2	ENSMUST00000219583.2	670	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	1	350	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGTAAGTAATCTAGG	3220	False	NA	NA	False	NA	NA	NA	95567088	95575215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_95567365_95570676_95570791_95574935
ENSMUST00000219591.2	chr10	-	596	3	FSM	ENSMUSG00000025362.7	ENSMUST00000219591.2	596	3	0	0	0	0	multi-exon	FALSE	canonical	3	15147	junction_1	3128	128512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATCGGAGTGTGTTTAT	NA	False	NA	-9	True	NA	NA	NA	128462293	128460402	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128460506_128461075_128461207_128461931
ENSMUST00000219748.2	chr10	-	1031	3	FSM	ENSMUSG00000112373.2	ENSMUST00000219748.2	1031	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATATTAGTTAGAGACTG	NA	False	NA	NA	False	AATATA	-33	NA	81893073	81891941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_81892348_81892370_81892936_81893013
ENSMUST00000219783.2	chr10	-	488	2	FSM	ENSMUSG00000061983.8	ENSMUST00000219783.2	488	2	0	0	0	0	multi-exon	FALSE	canonical	3	3174	junction_1	0	1035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTGATTTTTCTCTTG	NA	False	NA	-25	True	AATAAA	-6	NA	23661892	23661102	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_23661172_23661473
ENSMUST00000219855.2	chr12	-	296	1	FSM	ENSMUSG00000020648.4	ENSMUST00000219855.2	296	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	67	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTGAGTTGGTCTGG	9110	False	NA	NA	False	AATAAA	-21	NA	31704775	31704479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_31704500_31704800
ENSMUST00000219865.2	chr12	-	367	2	FSM	ENSMUSG00000005656.10	ENSMUST00000219865.2	367	2	0	0	0	0	multi-exon	FALSE	canonical	3	826	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTCTGGGCCACGAAACC	NA	False	NA	NA	False	NA	NA	NA	54842472	54841959	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_54842287_54842432
ENSMUST00000219896.2	chr10	-	542	3	FSM	ENSMUSG00000020219.8	ENSMUST00000219896.2	542	3	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_2	1726.5	8098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCACCTCACTGCTTCA	5632	False	NA	-7	True	AATAAA	-25	NA	80736619	80735737	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80736094_80736315_80736385_80736502
ENSMUST00000219915.2	chr10	+	2733	18	FSM	ENSMUSG00000019977.17	ENSMUST00000219915.2	2733	18	0	0	0	0	multi-exon	FALSE	canonical	3	828	junction_14	97.3053197904183	620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATTGCAAAAATGTGT	NA	False	NA	12	True	AATAAA	-14	NA	21171931	21244782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
ENSMUST00000219958.2	chr10	-	599	4	FSM	ENSMUSG00000034917.9	ENSMUST00000219958.2	599	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	41.7692071587032	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTCAGTGCTTGTTTTTT	7349	False	NA	NA	False	NA	NA	NA	81127049	81118610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_81118875_81119329_81119440_81119516_81119574_81126881
ENSMUST00000220027.2	chr10	-	1307	5	FSM	ENSMUSG00000039914.7	ENSMUST00000220027.2	1307	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	35.9400542570542	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTCATTTTTTGAG	7245	False	NA	-3	True	AATAAA	-12	NA	128204560	128198968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_128199661_128200273_128200376_128200891_128201085_128203875_128204023_128204387
ENSMUST00000220046.2	chr12	+	3040	27	FSM	ENSMUSG00000021048.8	ENSMUST00000220046.2	3040	27	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	281.366814005612	915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTGGTGTTGAAACATAA	8026	False	NA	8	True	AATAAA	-16	NA	76302186	76366576	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_76302319_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
ENSMUST00000220070.2	chr10	-	494	5	FSM	ENSMUSG00000061983.8	ENSMUST00000220070.2	494	5	0	0	0	0	multi-exon	FALSE	canonical	3	3174	junction_1	596.623153674076	261442	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	-18	True	AATAAA	-13	NA	23662987	23661095	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891
ENSMUST00000220110.2	chr10	-	768	3	FSM	ENSMUSG00000078453.4	ENSMUST00000220110.2	768	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	67	3457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTTCCTGGTGGCTGTG	NA	False	NA	-8	True	AATAAA	-18	NA	17898966	17887011	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_17887565_17894586_17894650_17898814
ENSMUST00000220127.2	chr10	+	1103	4	FSM	ENSMUSG00000074781.6	ENSMUST00000220127.2	1103	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	985.351826619417	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGCCTTTGTACAGTTT	NA	False	NA	NA	False	AGTAAA	-18	NA	95351046	95378868	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_95351100_95377066_95377241_95377499_95377641_95378133
ENSMUST00000220171.2	chr10	-	1795	3	FSM	ENSMUSG00000061983.8	ENSMUST00000220171.2	1795	3	0	0	0	0	multi-exon	FALSE	canonical	3	2594	junction_2	565	2114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTGTTTGCTGGTATA	NA	False	NA	-4	True	AATAAA	-27	NA	23663100	23661081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_23662779_23662891_23662943_23663053
ENSMUST00000220225.2	chr10	-	1129	3	FSM	ENSMUSG00000035215.10	ENSMUST00000220225.2	1129	3	0	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_2	840	602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTCTGTAACTTTGATC	NA	False	NA	-9	True	AATAAA	-29	NA	80691043	80688654	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80689664_80690451_80690543_80691014
ENSMUST00000220246.2	chr10	+	732	3	FSM	ENSMUSG00000015312.10	ENSMUST00000220246.2	732	3	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	12.5	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCCAAACATCTAAAGCAAC	336	False	NA	-57	True	NA	NA	NA	80765994	80767486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_80766384_80766862_80767086_80767366
ENSMUST00000220287.2	chr10	+	2726	4	FSM	ENSMUSG00000112160.2	ENSMUST00000220287.2	2726	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	4.78423336480244	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATATACTGCCATCCAT	NA	False	NA	NA	False	AATAAA	-19	NA	81919186	81947050	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_81919247_81943643_81943771_81943972_81944034_81944572
ENSMUST00000220301.2	chr10	+	720	5	FSM	ENSMUSG00000020186.8	ENSMUST00000220301.2	720	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	90.0860699553488	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACCTTTCAGAGGAGCTG	NA	False	NA	31	True	AATAAA	-32	NA	110770531	110775375	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_110770555_110771008_110771178_110773597_110773728_110774497_110774592_110775071
ENSMUST00000220314.2	chr10	+	2379	4	FSM	ENSMUSG00000112640.2	ENSMUST00000220314.2	2379	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	3.55902608401044	725	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATATTTATACTGCCAT	NA	False	NA	NA	False	AATAAA	-18	NA	81699767	81716915	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_81699844_81713862_81713990_81714188_81714250_81714800
ENSMUST00000220381.2	chr10	+	1084	12	FSM	ENSMUSG00000078427.4	ENSMUST00000220381.2	1084	12	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_9	1706.39307380042	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657800	128713498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_128657841_128669180_128669281_128674315_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128687606_128687802_128689051_128689121_128708289_128708380_128713201
ENSMUST00000220406.2	chr10	-	550	4	FSM	ENSMUSG00000035215.10	ENSMUST00000220406.2	550	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	2083.35727986237	10801	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTCCCTTCCTGCTCT	NA	False	NA	-21	True	AATAAA	-17	NA	80690977	80688666	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_80688935_80689591_80689664_80690451_80690543_80690858
ENSMUST00000220419.2	chr10	+	1665	3	FSM	ENSMUSG00000097412.3	ENSMUST00000220419.2	1665	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	104.5	597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTATGTGTATGAGT	NA	False	NA	1	True	AGTAAA	-10	NA	86521474	86525818	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_86521602_86521743_86521861_86524397
ENSMUST00000220449.2	chr13	-	2161	1	FSM	ENSMUSG00000114133.2	ENSMUST00000220449.2	2161	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2925	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCTAGCCAGAGCAATTAG	NA	False	NA	NA	False	NA	NA	NA	96217884	96215723	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_96215700_96217900
ENSMUST00000220469.2	chr13	-	478	3	FSM	ENSMUSG00000113135.2	ENSMUST00000220469.2	478	3	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_2	85	968	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAAGACCAGCCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	65768057	65763637	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_65763903_65764103_65764190_65767930
ENSMUST00000220512.2	chr13	-	1995	3	FSM	ENSMUSG00000113260.2	ENSMUST00000220512.2	1995	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCCTTTGCGTGTCAAT	7830	False	NA	NA	False	NA	NA	NA	65840810	65837426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_65839243_65840427_65840492_65840695
ENSMUST00000220670.2	chr13	+	688	4	FSM	ENSMUSG00000021458.18	ENSMUST00000220670.2	688	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	6.12825877028341	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGTTAGTCTCACTGTT	NA	False	NA	NA	False	AATAAA	-14	NA	63420631	63442985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_63420920_63421039_63421164_63429955_63430073_63442826
ENSMUST00000220680.2	chr13	-	1052	7	FSM	ENSMUSG00000058022.15	ENSMUST00000220680.2	1052	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	11.4273064776146	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGACATCTCCTGTTACT	NA	False	NA	-3	True	AATAAA	-45	NA	41981835	41918033	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_41918269_41920811_41920964_41930983_41931100_41964827_41964923_41967690_41967793_41969613_41969749_41981618
ENSMUST00000220682.2	chr12	+	507	2	FSM	ENSMUSG00000113209.2	ENSMUST00000220682.2	507	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAAAAGGGCCTGACACA	NA	False	NA	NA	False	AATAAA	-14	NA	54909775	54910449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_54909895_54910061
ENSMUST00000220726.2	chr12	+	758	2	FSM	ENSMUSG00000021241.8	ENSMUST00000220726.2	758	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	15	True	TATAAA	-18	NA	84820470	84821862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84820683_84821316
ENSMUST00000220756.2	chr12	-	887	1	FSM	ENSMUSG00000113976.2	ENSMUST00000220756.2	887	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCTCGGAATATCTTCAAT	NA	False	NA	NA	False	NA	NA	NA	72168569	72167682	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_72167700_72168600
ENSMUST00000220819.2	chr13	+	633	5	FSM	ENSMUSG00000042043.7	ENSMUST00000220819.2	633	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	650.566820165308	26584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAATTTTCAGTTGGCCA	NA	False	NA	37	True	AATAAA	-37	NA	94925417	94979430	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_94925511_94951618_94951693_94968867_94968974_94973615_94973703_94979157
ENSMUST00000220844.2	chr13	+	957	6	FSM	ENSMUSG00000046949.17	ENSMUST00000220844.2	957	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	83.0262609058122	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTTGCACTGTATTAG	NA	False	NA	13	True	AATACA	-25	NA	34148669	34169629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_34148784_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
ENSMUST00000220899.2	chr12	-	1994	2	FSM	ENSMUSG00000047832.10	ENSMUST00000220899.2	1994	2	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_1	0	1268	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGAATGTGTTAGGAGC	9612	False	NA	-8	True	ATTAAA	-11	NA	112793043	112783856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_112785733_112792925
ENSMUST00000220916.2	chr12	+	1599	6	FSM	ENSMUSG00000054894.7	ENSMUST00000220916.2	1599	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	68.5787138987018	509	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGCTAGTCTTTACTT	NA	False	NA	4	True	AATAAA	-16	NA	69771723	69791434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_69771789_69772228_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
ENSMUST00000220945.2	chr13	-	364	2	FSM	ENSMUSG00000113955.2	ENSMUST00000220945.2	364	2	0	0	0	0	multi-exon	FALSE	canonical	3	408	junction_1	0	533	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCCTTCGTTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	65644607	65639602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_65639775_65644415
ENSMUST00000221044.2	chr12	+	803	4	FSM	ENSMUSG00000097121.3	ENSMUST00000221044.2	803	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	3.39934634239519	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGTTTGGTTTAGTT	NA	False	NA	NA	False	AATAAA	-13	NA	101050000	101054438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_101050285_101050542_101050759_101052446_101052612_101054300
ENSMUST00000221129.2	chr12	-	1425	13	FSM	ENSMUSG00000020566.20	ENSMUST00000221129.2	1425	13	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_8	6.04841577054135	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTCTTTTCTTGTGTTCT	NA	False	NA	-2	True	AATAAA	-12	NA	17374731	17334725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_17334950_17335113_17335247_17338083_17338182_17341429_17341524_17341628_17341722_17344145_17344215_17344676_17344776_17347729_17347822_17351121_17351217_17358272_17358359_17371598_17371667_17373338_17373512_17374630
ENSMUST00000221142.2	chr13	+	4381	17	FSM	ENSMUSG00000021392.9	ENSMUST00000221142.2	4381	17	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	40.4735639028737	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGTCTTTTATTTAAAAA	NA	False	NA	23	True	ATTAAA	-16	NA	49806814	49832492	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_49807159_49807826_49807979_49808648_49808712_49810150_49810230_49812171_49812308_49813425_49813495_49814433_49816252_49817529_49817644_49818203_49818327_49818854_49818946_49820830_49820967_49823184_49823263_49826027_49826300_49828861_49828989_49829797_49829866_49830230_49830311_49831861
ENSMUST00000221166.2	chr12	-	981	7	FSM	ENSMUSG00000020949.10	ENSMUST00000221166.2	981	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	3855.04114764032	63153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGTGTGTTCTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	65120736	65109197	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116720_65116827_65120588
ENSMUST00000221173.2	chr13	-	1549	5	FSM	ENSMUSG00000069208.10	ENSMUST00000221173.2	1549	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	20.0546129356814	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	74642111	74628175	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_74629270_74630657_74630719_74630935_74631063_74632017_74632142_74641968
ENSMUST00000221191.2	chr12	-	511	3	FSM	ENSMUSG00000113902.2	ENSMUST00000221191.2	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_2	787	9785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAATTAGAAGAATTTAAA	NA	False	NA	-17	True	AATAAA	-12	NA	101942186	101934368	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_101934470_101935751_101935894_101941918
ENSMUST00000221205.2	chr12	+	1815	2	FSM	ENSMUSG00000113416.2	ENSMUST00000221205.2	1815	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	317	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGATATAGCTGTCTCC	NA	False	NA	NA	False	NA	NA	NA	18074067	18077468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_18074184_18075769
ENSMUST00000221259.2	chr13	-	532	3	FSM	ENSMUSG00000034617.8	ENSMUST00000221259.2	532	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	182.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCGGAAGTTTGTTAAAGA	NA	False	NA	NA	False	NA	NA	NA	68730213	68727740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_68727816_68728669_68728835_68729921
ENSMUST00000221296.2	chr12	-	969	6	FSM	ENSMUSG00000047534.18	ENSMUST00000221296.2	969	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	123.279195325083	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAAAAAAAGATGCAGA	NA	False	NA	NA	False	AAGAAA	-9	NA	65219373	65199546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65219222
ENSMUST00000221300.2	chr13	+	2397	13	FSM	ENSMUSG00000039242.11	ENSMUST00000221300.2	2397	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	59.0322416612782	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTGACTCACTTCAAC	NA	False	NA	NA	False	AATAAA	-34	NA	14129258	14173671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477_14171638_14172939
ENSMUST00000221372.2	chr12	+	1840	14	FSM	ENSMUSG00000059669.9	ENSMUST00000221372.2	1840	14	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	59.0833329855924	814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTGGAAACTTGCAT	NA	False	NA	12	True	ATTAAA	-21	NA	24548628	24608538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
ENSMUST00000221374.2	chr12	-	1128	4	FSM	ENSMUSG00000062929.9	ENSMUST00000221374.2	1128	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	123.758725842755	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAATGTTGCCTTGTTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	54909583	54907080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_54908023_54908121_54908199_54908564_54908619_54909528
ENSMUST00000221375.2	chr12	+	1265	8	FSM	ENSMUSG00000021286.9	ENSMUST00000221375.2	1265	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_5	290.764860465691	1926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAAGTGTATAATTAAAA	NA	False	NA	-19	True	ATTAAA	-22	NA	111780668	111794785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111792009_111792067_111793976_111794120_111794251
ENSMUST00000221397.2	chr12	-	1241	5	FSM	ENSMUSG00000002804.5	ENSMUST00000221397.2	1241	5	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_2	18.0277563773199	1579	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCATGCGTAACATGAACT	8847	False	NA	NA	False	ATTAAA	-15	NA	112905744	112897910	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_112898671_112901975_112902214_112902414_112902480_112902898_112902943_112905610
ENSMUST00000221411.2	chr12	-	1641	19	FSM	ENSMUSG00000020974.7	ENSMUST00000221411.2	1641	19	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_2	100.091563019339	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTACACATTGTAGTTT	NA	False	NA	-5	True	AATAAA	-20	NA	69274953	69248546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_69248657_69249680_69249749_69250913_69251042_69253183_69253293_69254632_69254711_69254794_69254855_69255690_69255746_69256085_69256176_69256595_69256769_69258146_69258220_69258996_69259046_69259760_69259818_69260602_69260687_69262084_69262160_69268750_69268845_69269172_69269251_69269877_69269954_69273111_69273213_69274870
ENSMUST00000221419.2	chr13	+	757	1	FSM	ENSMUSG00000113219.2	ENSMUST00000221419.2	757	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGGATGTACATCAGAC	NA	False	NA	NA	False	NA	NA	NA	17512183	17512940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_17512200_17512900
ENSMUST00000221422.2	chr12	-	861	3	FSM	ENSMUSG00000113902.2	ENSMUST00000221422.2	861	3	0	0	0	0	multi-exon	FALSE	canonical	3	1653	junction_2	166	13904	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGATTCTTTTATTTATT	NA	False	NA	3	True	AATAAA	-32	NA	101942513	101934348	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_101934470_101935751_101935897_101941918
ENSMUST00000221435.2	chr13	+	491	4	FSM	ENSMUSG00000062382.10	ENSMUST00000221435.2	491	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	41.4085337420521	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTCTCTGGGCTTCTTTT	1247	False	NA	NA	False	NA	NA	NA	74547812	74554814	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_74547912_74553897_74554023_74554221_74554283_74554608
ENSMUST00000221480.2	chr13	+	582	2	FSM	ENSMUSG00000012429.10	ENSMUST00000221480.2	582	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCATATTTGACATTTCC	NA	False	NA	-61	True	NA	NA	NA	17869776	17871841	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_17869944_17871426
ENSMUST00000221489.2	chr12	+	1214	3	FSM	ENSMUSG00000114025.2	ENSMUST00000221489.2	1214	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	740	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAATTTAAATGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	17952389	17954676	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_17952628_17952966_17953537_17954270
ENSMUST00000221542.2	chr13	+	1560	5	FSM	ENSMUSG00000074867.5	ENSMUST00000221542.2	1560	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	23.2634369773686	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCACACTGGAGAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	62277715	62383958	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_62277843_62351245_62351373_62351567_62351629_62381382_62381444_62382774
ENSMUST00000221613.2	chr12	+	1982	8	FSM	ENSMUSG00000011179.9	ENSMUST00000221613.2	1982	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	582.447299884597	16336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTGTAAATCTTTACC	NA	False	NA	23	True	AATAAA	-18	NA	17597689	17601506	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_17597808_17597950_17598124_17598309_17598445_17598545_17598645_17599357_17599588_17599668_17599782_17599863_17600079_17600607
ENSMUST00000221637.2	chr13	+	452	3	FSM	ENSMUSG00000113081.2	ENSMUST00000221637.2	452	3	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_2	20.5	3747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATTGCAGGTATCTGAA	NA	False	NA	13	True	NA	NA	NA	62411379	62421101	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_62411510_62420579_62420707_62420906
ENSMUST00000221699.2	chr13	-	1174	3	FSM	ENSMUSG00000015672.5	ENSMUST00000221699.2	1174	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	520.5	11188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAGTTGTTGAAAATGTA	NA	False	NA	NA	False	AATAAA	-24	NA	14787610	14784497	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_14785326_14786007_14786190_14787446
ENSMUST00000221710.2	chr12	-	1233	6	FSM	ENSMUSG00000020949.10	ENSMUST00000221710.2	1233	6	0	0	0	0	multi-exon	FALSE	canonical	3	9942	junction_1	352.092828668804	1575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGCTGTCCTCAGGTCC	NA	False	NA	NA	False	CATAAA	-35	NA	65120736	65109878	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
ENSMUST00000221715.2	chr12	+	2367	12	FSM	ENSMUSG00000017843.15	ENSMUST00000221715.2	2367	12	0	0	0	0	multi-exon	FALSE	canonical	3	738	junction_1	90.3704039902189	927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGTGTGTATTTTCCTA	4920	False	NA	14	True	AATAAA	-16	NA	110452171	110538122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
ENSMUST00000221763.2	chr13	+	1044	3	FSM	ENSMUSG00000113081.2	ENSMUST00000221763.2	1044	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATGTAAAAAAAAATTCTAT	NA	False	NA	NA	False	NA	NA	NA	62420574	62423067	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_62420708_62420910_62420969_62422214
ENSMUST00000221828.2	chr13	+	569	4	FSM	ENSMUSG00000113760.2	ENSMUST00000221828.2	569	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	62.055530687352	750	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAAACCTTATGAATGTA	NA	False	NA	NA	False	NA	NA	NA	66180022	66188061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_66180131_66186206_66186334_66186533_66186595_66187788
ENSMUST00000221871.2	chr12	-	820	6	FSM	ENSMUSG00000061477.5	ENSMUST00000221871.2	820	6	0	0	0	0	multi-exon	FALSE	canonical	3	10789	junction_4	2615.27425712869	103210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGTTGTAGTAACTTGT	NA	False	NA	-11	True	AATAAA	-15	NA	28685856	28681082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578
ENSMUST00000221974.2	chr13	+	2439	13	FSM	ENSMUSG00000039242.11	ENSMUST00000221974.2	2439	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_12	57.9839537190151	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGCTGTAGTACCCTGAA	NA	False	NA	NA	False	AATAAA	-30	NA	14129209	14173688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477_14171638_14172963
ENSMUST00000221996.2	chr13	-	2458	4	FSM	ENSMUSG00000074863.6	ENSMUST00000221996.2	2458	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	60.1461183748008	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGTTCCTGGGAAAAAAC	NA	False	NA	1	True	AATAAA	-20	NA	62832759	62819597	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_62821755_62823062_62823124_62823332_62823460_62832646
ENSMUST00000222087.4	chr8	-	980	7	FSM	ENSMUSG00000031838.11	ENSMUST00000222087.4	980	7	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_6	19.0065778087482	2773	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTTTTCCTAGAGTTG	NA	False	NA	-15	True	AATAAA	-18	NA	71219307	71215418	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_71215686_71215772_71215827_71216371_71216525_71217191_71217285_71217363_71217439_71217563_71217747_71219152
ENSMUST00000222164.2	chr13	-	1340	7	FSM	ENSMUSG00000021302.11	ENSMUST00000222164.2	1340	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	113.396673476586	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACATTAAAAAAAAATTATCT	NA	False	NA	NA	False	NA	NA	NA	14237998	14226541	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_14226716_14226862_14226979_14228494_14229041_14229734_14229806_14232380_14232474_14233903_14234036_14237790
ENSMUST00000222166.2	chr12	+	1588	2	FSM	ENSMUSG00000021241.8	ENSMUST00000222166.2	1588	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	15	True	TATAAA	-18	NA	84820050	84821862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84820146_84820369
ENSMUST00000222324.2	chr13	+	886	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222324.2	886	4	0	0	0	0	multi-exon	FALSE	canonical	3	481	junction_1	27.9801516952444	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTATGTGTGAAAGCCTG	NA	False	NA	-66	True	NA	NA	NA	62245583	62259791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259162
ENSMUST00000222399.2	chr13	+	2430	16	FSM	ENSMUSG00000057649.7	ENSMUST00000222399.2	2430	16	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_6	38.2023850331654	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACCCCGTCCGCTTTGAT	NA	False	NA	28	True	AATAAA	-25	NA	74085929	74109013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090812_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
ENSMUST00000222407.2	chr12	+	489	2	FSM	ENSMUSG00000036613.9	ENSMUST00000222407.2	489	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAATTTGTAATGATTGC	1134	False	NA	NA	False	NA	NA	NA	28801837	28802741	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_28802004_28802418
ENSMUST00000222429.2	chr13	-	1653	4	FSM	ENSMUSG00000074865.12	ENSMUST00000222429.2	1653	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	51.4220013439989	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTGCATATTTGTGTGT	NA	False	NA	-8	True	ATTAAA	-40	NA	62706421	62634459	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_62635805_62640180_62640241_62640621_62640749_62706300
ENSMUST00000222435.2	chr13	+	938	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	101931	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAGATAA	7962	False	NA	NA	False	NA	NA	NA	74554527	74555465	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_74554500_74555500
ENSMUST00000222455.2	chr13	-	1614	4	FSM	ENSMUSG00000112964.2	ENSMUST00000222455.2	1614	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	3.29983164553722	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTAGAATGCAATCAATGT	6469	False	NA	NA	False	NA	NA	NA	74610838	74595390	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_74596679_74598074_74598136_74598354_74598482_74610700
ENSMUST00000222457.2	chr12	-	723	5	FSM	ENSMUSG00000021276.11	ENSMUST00000222457.2	723	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	152.938508885107	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACTTTGTAGGAGGTTA	3378	False	NA	-19	True	AATAAA	-8	NA	110855550	110841467	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_110841711_110843274_110843405_110846118_110846249_110850323_110850493_110855499
ENSMUST00000222499.2	chr13	+	756	7	FSM	ENSMUSG00000063200.5	ENSMUST00000222499.2	756	7	0	0	0	0	multi-exon	FALSE	canonical	3	1274	junction_1	93.7432960566011	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAGGTGGGTCATGATTT	NA	False	NA	NA	False	AATAAA	-11	NA	43551867	43555111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_43552135_43552210_43552272_43552986_43553046_43554068_43554098_43554328_43554411_43554772_43554895_43554975
ENSMUST00000222520.2	chr12	+	767	3	FSM	ENSMUSG00000034883.10	ENSMUST00000222520.2	767	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	59	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATATCAATGTCTCAGCA	NA	False	NA	5	True	ATTAAA	-19	NA	69215594	69225779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_69215837_69218635_69218735_69225353
ENSMUST00000222529.2	chr12	-	3181	3	FSM	ENSMUSG00000021248.10	ENSMUST00000222529.2	3181	3	0	0	0	0	multi-exon	FALSE	canonical	3	1293	junction_2	27.5	1065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGGTGTATTTGTCTGT	NA	False	NA	-1	True	AATAAA	-16	NA	85397694	85387387	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_85390324_85390998_85391126_85397576
ENSMUST00000222606.2	chr12	+	2284	12	FSM	ENSMUSG00000042472.12	ENSMUST00000222606.2	2284	12	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	61.2357590123466	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACCTCTTTGGCTCTTGT	1861	False	NA	8	True	AATAAA	-13	NA	84363903	84390494	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372376_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
ENSMUST00000222705.2	chr12	-	2839	2	FSM	ENSMUSG00000001270.10	ENSMUST00000222705.2	2839	2	0	0	0	0	multi-exon	FALSE	canonical	3	8476	junction_1	0	1731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638716	111635794	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_111636176_111636258
ENSMUST00000222710.2	chr12	+	521	4	FSM	ENSMUSG00000059669.9	ENSMUST00000222710.2	521	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	107.002596022506	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTTCTGTCTTAGTTA	NA	False	NA	NA	False	ATTAAA	-18	NA	24548609	24559747	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559452
ENSMUST00000222746.2	chr13	-	2206	3	FSM	ENSMUSG00000074865.12	ENSMUST00000222746.2	2206	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	2.5	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGTGTGGACCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62706443	62664608	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_62666545_62668231_62668359_62706300
ENSMUST00000222763.2	chr12	-	1340	14	FSM	ENSMUSG00000020982.10	ENSMUST00000222763.2	1340	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	83.598505125221	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAAGCAGCTGCAGAAGC	NA	False	NA	NA	False	NA	NA	NA	69403912	69387751	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_69387831_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
ENSMUST00000222793.2	chr12	-	945	4	FSM	ENSMUSG00000002804.5	ENSMUST00000222793.2	945	4	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	7.71722460186015	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCTTGTGTAAGTTTTA	8884	False	NA	-28	True	NA	NA	NA	112905707	112898370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_112898671_112901975_112902480_112902898_112902943_112905610
ENSMUST00000222808.2	chr12	-	403	3	FSM	ENSMUSG00000061477.5	ENSMUST00000222808.2	403	3	0	0	0	0	multi-exon	FALSE	canonical	3	12310	junction_1	2151.5	1221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	-10	True	AATAAA	-16	NA	28683907	28681081	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_28681193_28681622_28681774_28683766
ENSMUST00000222812.2	chr12	-	527	2	FSM	ENSMUSG00000113722.2	ENSMUST00000222812.2	527	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	270	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTGTCTCGTCTACTC	8338	False	NA	NA	False	NA	NA	NA	104998536	104996875	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_104997085_104998218
ENSMUST00000222821.2	chr12	+	783	9	FSM	ENSMUSG00000007867.10	ENSMUST00000222821.2	783	9	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_5	10.7637992827812	1474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTCTTCCATTCTGTCC	NA	False	NA	7	True	AATAAA	-17	NA	86129360	86209233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_86129415_86131867_86131961_86158384_86158450_86185566_86185600_86186825_86186870_86207922_86207996_86208225_86208302_86208760_86208824_86208951
ENSMUST00000222847.2	chr13	+	2239	3	FSM	ENSMUSG00000113626.2	ENSMUST00000222847.2	2239	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTACGAAGGAATTGGATTG	NA	False	NA	NA	False	NA	NA	NA	61952079	62009489	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_61952220_62005782_62005910_62007517
ENSMUST00000222929.2	chr13	+	1055	6	FSM	ENSMUSG00000021458.18	ENSMUST00000222929.2	1055	6	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	29.9933325924279	519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCCAGTTTGCTTCTGAA	NA	False	NA	3	True	AATAAA	-17	NA	63387842	63450096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_63387970_63388070_63388146_63429955_63430073_63444671_63444759_63446525_63446671_63449592
ENSMUST00000222930.2	chr13	-	512	4	FSM	ENSMUSG00000021606.9	ENSMUST00000222930.2	512	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1139.1816751023	36036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTCTTCCTTTCATAAA	NA	False	NA	4	True	AATAAA	-26	NA	73476574	73467985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_73468204_73468412_73468536_73475534_73475589_73476457
ENSMUST00000223041.2	chr6	+	1128	3	FSM	ENSMUSG00000059689.16	ENSMUST00000223041.2	1128	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	10.5	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGTATTTTTCATAATT	NA	False	NA	10	True	AATAAA	-17	NA	117818214	117822916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_+_117818230_117820213_117820354_117821943
ENSMUST00000223093.2	chr13	-	2351	8	FSM	ENSMUSG00000021306.12	ENSMUST00000223093.2	2351	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	66.0247325335169	1081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGCAGACTCCTGACAGC	NA	False	NA	NA	False	AATAAA	-26	NA	13568149	13533019	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_13534009_13535412_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
ENSMUST00000223119.2	chr12	-	479	1	FSM	ENSMUSG00000021039.10	ENSMUST00000223119.2	479	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	311	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	87519039	87518560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_87518600_87519000
ENSMUST00000223120.2	chr13	+	1333	3	FSM	ENSMUSG00000021591.9	ENSMUST00000223120.2	1333	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	143	1235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGTCCGGTTCTGTGCT	NA	False	NA	33	True	ATTAAA	-25	NA	75988019	75998273	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_75988295_75995288_75995418_75997344
ENSMUST00000223194.2	chr13	+	1398	9	FSM	ENSMUSG00000054021.7	ENSMUST00000223194.2	1398	9	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	63.0811729044411	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTATTTTTTTGTACTTT	NA	False	NA	10	True	ATTAAA	-22	NA	43518981	43548679	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_43519021_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
ENSMUST00000223237.2	chr6	-	1081	2	FSM	ENSMUSG00000048668.17	ENSMUST00000223237.2	1081	2	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_1	0	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATGCAGCCTCGTGCCC	3985	False	NA	-12	True	AATAAA	-36	NA	128336320	128334327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_128335157_128336068
ENSMUST00000223247.2	chr13	-	1949	3	FSM	ENSMUSG00000113450.2	ENSMUST00000223247.2	1949	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	14.5	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTTGCATATCACAGTTA	9538	False	NA	-4	True	NA	NA	NA	62614620	62601285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_62603008_62604746_62604874_62614520
ENSMUST00000223267.2	chr12	+	126	1	FSM	ENSMUSG00000113234.2	ENSMUST00000223267.2	126	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCGGTAGCATAGCCCG	NA	False	NA	NA	False	NA	NA	NA	18043133	18043259	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_18043100_18043300
ENSMUST00000223293.2	chr13	-	757	3	FSM	ENSMUSG00000021606.9	ENSMUST00000223293.2	757	3	0	0	0	0	multi-exon	FALSE	canonical	3	2374	junction_1	41.5	2898	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGAGCCGCTTCGCTGC	NA	False	NA	33	True	CATAAA	-10	NA	73476581	73467956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_73468536_73475534_73475589_73476457
ENSMUST00000223319.2	chr13	+	2501	7	FSM	ENSMUSG00000021532.12	ENSMUST00000223319.2	2501	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	60.5658502971949	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGGTGTGTACTCTTGTT	NA	False	NA	NA	False	AATAAA	-12	NA	68730381	68740455	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_68730470_68731657_68733122_68733296_68733383_68735778_68735954_68737341_68737509_68738224_68738340_68740049
ENSMUST00000223322.2	chr12	+	1368	7	FSM	ENSMUSG00000020630.10	ENSMUST00000223322.2	1368	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	93.4768242221924	1376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGAACACATCTAGTTT	NA	False	NA	7	True	AATAAA	-15	NA	28699622	28709582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_28699816_28702023_28702140_28703061_28703224_28705583_28705684_28707635_28707717_28708169_28708295_28708991
ENSMUST00000223386.2	chr13	-	571	2	FSM	ENSMUSG00000021576.7	ENSMUST00000223386.2	571	2	0	0	0	0	multi-exon	FALSE	canonical	3	840	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGGAAGTATGTTTGCTA	NA	False	NA	NA	False	NA	NA	NA	74465335	74464049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_74464511_74465225
ENSMUST00000223407.2	chr12	-	702	4	FSM	ENSMUSG00000021276.11	ENSMUST00000223407.2	702	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	192.582449875372	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGCTGCTCTTTCTTTTTT	3370	False	NA	-2	True	AATACA	-15	NA	110855558	110845129	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_110845474_110846118_110846249_110850323_110850493_110855499
ENSMUST00000223450.2	chr12	-	2726	4	FSM	ENSMUSG00000062929.9	ENSMUST00000223450.2	2726	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	134.037308239162	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGAGATGTGTTTACT	NA	False	NA	-3	True	AATAAA	-20	NA	54909583	54905593	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_54908023_54908121_54908199_54908453_54908619_54909528
ENSMUST00000223461.2	chr13	-	1542	13	FSM	ENSMUSG00000033114.12	ENSMUST00000223461.2	1542	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_11	41.1348561306453	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAGTGTGATATTACAGT	NA	False	NA	NA	False	AATAAA	-19	NA	64277150	64244954	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64270132_64270167_64274564_64274656_64276999
ENSMUST00000223470.3	chr13	-	1306	3	FSM	ENSMUSG00000113346.3	ENSMUST00000223470.3	1306	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	10.5	233	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTCCTGAGTTCAAATCC	NA	False	NA	0	True	NA	NA	NA	73495503	73492783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_73493358_73494614_73495181_73495337
ENSMUST00000223544.2	chr12	-	1098	1	FSM	ENSMUSG00000021079.17	ENSMUST00000223544.2	1098	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTTGTCTGTTCATCCC	NA	False	NA	NA	False	NA	NA	NA	71183409	71182311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_-_71182300_71183400
ENSMUST00000223548.2	chr12	+	569	3	FSM	ENSMUSG00000021262.16	ENSMUST00000223548.2	569	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	98.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGGCTCTGGCTCACTCT	3951	False	NA	17	True	AATAAA	-17	NA	108652355	108654775	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_108652376_108652663_108652725_108654287
ENSMUST00000223558.2	chr14	+	289	2	FSM	ENSMUSG00000039197.11	ENSMUST00000223558.2	289	2	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	0	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATGATGATCCATTTTA	NA	False	NA	4	True	AATAAA	-15	NA	21102678	21103988	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_21102769_21103789
ENSMUST00000223683.2	chr19	+	2398	13	FSM	ENSMUSG00000015176.12	ENSMUST00000223683.2	2398	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	313.587042674491	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGTTGTGATTTTCAG	47	False	NA	14	True	ATTAAA	-14	NA	46064470	46072900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_46064589_46067141_46067198_46067311_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
ENSMUST00000223697.2	chr14	-	915	1	FSM	ENSMUSG00000033111.17	ENSMUST00000223697.2	915	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	90	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	10185462	10184547	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_10184500_10185500
ENSMUST00000223728.2	chr19	+	3523	13	FSM	ENSMUSG00000015176.12	ENSMUST00000223728.2	3523	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	265.145819419344	1845	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTCAGAGTTATGTCGT	244	False	NA	13	True	AATAAA	-16	NA	46064408	46073969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
ENSMUST00000223737.2	chr14	+	1057	1	FSM	ENSMUSG00000022043.20	ENSMUST00000223737.2	1057	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	207	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-16	NA	66534514	66535571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_66534500_66535600
ENSMUST00000223789.3	chr18	+	1557	10	FSM	ENSMUSG00000034391.13	ENSMUST00000223789.3	1557	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	268.357187805569	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGAGTTAGCAGTAGGG	NA	False	NA	-12	True	NA	NA	NA	84970240	84999501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_84970384_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
ENSMUST00000223804.2	chr13	+	1136	2	FSM	ENSMUSG00000035958.4	ENSMUST00000223804.2	1136	2	0	0	0	0	multi-exon	FALSE	canonical	3	778	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTAGAGATTTTCTCCT	NA	False	NA	NA	False	NA	NA	NA	25015674	25016890	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_25015913_25015992
ENSMUST00000223827.2	chr13	+	2632	12	FSM	ENSMUSG00000035762.12	ENSMUST00000223827.2	2632	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	68.3415099589633	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTAATTTATTTGTT	NA	False	NA	21	True	ATTAAA	-22	NA	84370432	84443989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432305_84434803_84434918_84440497_84440673_84441499_84441597_84442721
ENSMUST00000223920.2	chr19	+	1803	9	FSM	ENSMUSG00000039126.11	ENSMUST00000223920.2	1803	9	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_3	14.3352711868315	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTAACACTCAGATGCA	NA	False	NA	NA	False	NA	NA	NA	17114129	17198948	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_17114256_17145626_17145707_17156153_17156355_17170619_17170794_17176476_17176580_17177144_17177277_17179005_17179093_17185594_17185694_17198147
ENSMUST00000223921.2	chr14	-	601	4	FSM	ENSMUSG00000041028.17	ENSMUST00000223921.2	601	4	0	0	0	0	multi-exon	FALSE	canonical	3	5046	junction_1	285.925786797126	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCATTAGTCATAGATTTA	NA	False	NA	NA	False	NA	NA	NA	36857229	36853354	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_36853607_36855127_36855228_36855589_36855761_36857151
ENSMUST00000223931.2	chr14	+	461	4	FSM	ENSMUSG00000025290.18	ENSMUST00000223931.2	461	4	0	0	0	0	multi-exon	FALSE	canonical	1	205	junction_1	5937.85675887259	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGGTTCATGGCTGCTGC	NA	False	NA	68	True	AAAAAG	-1	NA	24537192	24543561	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_24537267_24541817_24541884_24541974_24542185_24543450
ENSMUST00000223934.2	chr19	-	3448	24	FSM	ENSMUSG00000024943.10	ENSMUST00000223934.2	3448	24	0	0	0	0	multi-exon	FALSE	canonical	2	185	junction_5	71.1727842464471	2094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTTATTTTTGGAAACCT	NA	False	NA	4	True	AATAAA	-29	NA	23251261	23186086	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192005_23192105_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
ENSMUST00000223939.2	chr14	+	2769	4	FSM	ENSMUSG00000025290.18	ENSMUST00000223939.2	2769	4	0	0	0	0	multi-exon	FALSE	canonical	3	9630	junction_1	1522.07774659071	1638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTCCTACACGTCTG	NA	False	NA	4	True	AATAAA	-3	NA	24540796	24545913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450
ENSMUST00000223999.2	chr14	+	525	7	FSM	ENSMUSG00000025290.18	ENSMUST00000223999.2	525	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	5419.3877396088	44724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTCCTACACGTCTG	NA	False	NA	4	True	AATAAA	-3	NA	24540797	24545913	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24544119_24544138_24545497_24545518_24545842
ENSMUST00000224069.2	chr14	+	1818	11	FSM	ENSMUSG00000039197.11	ENSMUST00000224069.2	1818	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	100.003199948802	1736	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGGATTTTTTTTCTGTC	NA	False	NA	9	True	AATAAA	-12	NA	21126219	21498630	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_21126390_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21419138_21419175_21431570_21431686_21473570_21473658_21497881
ENSMUST00000224079.2	chr14	+	1686	8	FSM	ENSMUSG00000039599.17	ENSMUST00000224079.2	1686	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	92.3493809576724	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCTGGCTCACAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	20398342	20426355	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20424397_20424523_20425577
ENSMUST00000224081.2	chr13	+	978	4	FSM	ENSMUSG00000062822.9	ENSMUST00000224081.2	978	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	38.4389848403357	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACCAGATCTTGAAATCTA	NA	False	NA	-1	True	AATAAA	-15	NA	119599309	119606361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_119599656_119602609_119602841_119603402_119603493_119606050
ENSMUST00000224116.2	chr13	-	1562	3	FSM	ENSMUSG00000074830.5	ENSMUST00000224116.2	1562	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATTATCAATGTGGAAAG	NA	False	NA	NA	False	NA	NA	NA	66821393	66817991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_66819369_66821007_66821069_66821269
ENSMUST00000224150.2	chr13	-	784	6	FSM	ENSMUSG00000021377.16	ENSMUST00000224150.2	784	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	757.290063317881	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTGTATTTTCTTGTAG	NA	False	NA	NA	False	NA	NA	NA	47251813	47239407	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47246593_47246690_47251630
ENSMUST00000224166.2	chr13	+	340	2	FSM	ENSMUSG00000114893.2	ENSMUST00000224166.2	340	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTATAAACATACATGAGT	NA	False	NA	NA	False	AATAAA	-25	NA	107170791	107171725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_107170837_107171430
ENSMUST00000224182.2	chr13	-	2754	16	FSM	ENSMUSG00000021546.19	ENSMUST00000224182.2	2754	16	0	0	0	0	multi-exon	FALSE	canonical	3	4568	junction_3	976.692573035253	7074	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACGTGTGCCCAATTTGA	4751	False	NA	-19	True	AATAAA	-19	NA	58550330	58539048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
ENSMUST00000224220.2	chr13	+	1204	4	FSM	ENSMUSG00000021486.8	ENSMUST00000224220.2	1204	4	0	0	0	0	multi-exon	FALSE	canonical	3	1299	junction_2	69.7726466620138	5605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTTCTGGAGTCAGATAG	5553	False	NA	15	True	NA	NA	NA	55469831	55473082	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_55470095_55470665_55470892_55472143_55472419_55472642
ENSMUST00000224284.3	chr18	+	1955	20	FSM	ENSMUSG00000024474.8	ENSMUST00000224284.3	1955	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_14	168.043095646503	4523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	6	True	ATTAAA	-16	NA	36877744	36890688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882039_36882266_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888478_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
ENSMUST00000224286.2	chr14	-	801	3	FSM	ENSMUSG00000049960.5	ENSMUST00000224286.2	801	3	0	0	0	0	multi-exon	TRUE	canonical	3	91	junction_2	790	8677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACGGTCCTCTGGCATAG	8678	False	NA	-36	True	AATAAA	-14	NA	20443551	20441294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_20441529_20441960_20442222_20443245
ENSMUST00000224313.2	chr14	+	519	1	FSM	ENSMUSG00000021967.5	ENSMUST00000224313.2	519	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4463	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTTGTCTCATACGGAA	NA	False	NA	25	True	ATTAAA	-17	NA	58063886	58064405	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_58063900_58064400
ENSMUST00000224331.2	chr14	+	983	5	FSM	ENSMUSG00000040726.11	ENSMUST00000224331.2	983	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	69.4383719567215	765	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGACCGGTATTTTAATATA	NA	False	NA	NA	False	AATAAA	-14	NA	26716372	26724282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_26716480_26722579_26722834_26723328_26723529_26723775_26723878_26723962
ENSMUST00000224387.2	chr18	+	1425	4	FSM	ENSMUSG00000024542.10	ENSMUST00000224387.2	1425	4	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	11.1455023315337	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	113	False	NA	NA	False	NA	NA	NA	67933182	67938447	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435
ENSMUST00000224463.2	chr13	+	658	4	FSM	ENSMUSG00000049517.9	ENSMUST00000224463.2	658	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	9398.7280108652	155893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAAATATTTTGTGTCTT	NA	False	NA	NA	False	AATAAA	-13	NA	91071335	91072842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_91071526_91071705_91071866_91072444_91072566_91072655
ENSMUST00000224467.3	chr18	+	1910	10	FSM	ENSMUSG00000034391.13	ENSMUST00000224467.3	1910	10	0	0	0	0	multi-exon	FALSE	canonical	3	723	junction_3	71.0602248487546	3787	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGGTGTCTTATTT	800	False	NA	26	True	AATAAA	-15	NA	84952906	84999598	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
ENSMUST00000224484.2	chr13	+	1561	3	FSM	ENSMUSG00000114426.2	ENSMUST00000224484.2	1561	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTTTTCCAGAGTACTA	NA	False	NA	NA	False	NA	NA	NA	66720984	66723975	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_66721106_66721306_66721371_66722599
ENSMUST00000224487.2	chr13	-	533	2	FSM	ENSMUSG00000001707.9	ENSMUST00000224487.2	533	2	0	0	0	0	multi-exon	FALSE	canonical	3	1400	junction_1	0	739	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATTAACAAGAGCAT	NA	False	NA	NA	False	AATAAA	-20	NA	38842986	38839787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_38840217_38842882
ENSMUST00000224496.2	chr13	-	504	3	FSM	ENSMUSG00000055560.9	ENSMUST00000224496.2	504	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	2.5	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCATGGCTCTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	67569527	67561012	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_67561323_67561952_67562080_67569460
ENSMUST00000224536.2	chr13	-	570	2	FSM	ENSMUSG00000114689.2	ENSMUST00000224536.2	570	2	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCTCCATCTTTGAACA	NA	False	NA	-6	True	ATTAAA	-23	NA	98853018	98849581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_98850076_98852942
ENSMUST00000224568.2	chr14	+	714	6	FSM	ENSMUSG00000025290.18	ENSMUST00000224568.2	714	6	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_1	4812.24305288085	8633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTCTGAGAGGACAAATAAA	NA	False	NA	-18	True	NA	NA	NA	24540834	24545891	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_24541093_24541817_24541884_24541974_24542185_24543450_24543562_24545497_24545518_24545842
ENSMUST00000224611.2	chr13	+	1750	8	FSM	ENSMUSG00000021420.14	ENSMUST00000224611.2	1750	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	107.637524751798	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGCATTTGTCTTTTATT	NA	False	NA	13	True	AATAAA	-24	NA	36301857	36721571	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_36301989_36332343_36332428_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
ENSMUST00000224633.2	chr14	+	557	2	FSM	ENSMUSG00000063787.5	ENSMUST00000224633.2	557	2	0	0	0	0	multi-exon	FALSE	canonical	3	2056	junction_1	0	3273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAGTTGGCCATTTCTT	NA	False	NA	27	True	AATAAA	-10	NA	20753218	20754487	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_20753477_20754188
ENSMUST00000224685.2	chr13	-	454	3	FSM	ENSMUSG00000034789.9	ENSMUST00000224685.2	454	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	310	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCACTGGGTGTCAAA	7851	False	NA	-17	True	AATAAA	-19	NA	55468349	55467692	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_55468050_55468124_55468188_55468315
ENSMUST00000224698.2	chr14	-	1985	18	FSM	ENSMUSG00000022040.9	ENSMUST00000224698.2	1985	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	50.8642946534033	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTCTTGTGTTCTTGAGA	NA	False	NA	-2	True	AATAAA	-19	NA	66349835	66321822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_66322210_66322379_66322439_66322744_66322826_66323682_66323753_66324413_66324517_66325748_66325783_66326954_66327030_66330247_66330360_66332186_66332273_66333134_66333162_66336252_66336288_66339041_66339121_66339595_66339692_66341174_66341244_66344662_66344786_66345425_66345617_66347564_66347725_66349637
ENSMUST00000224707.2	chr19	-	1255	7	FSM	ENSMUSG00000024889.6	ENSMUST00000224707.2	1255	7	0	0	0	0	multi-exon	TRUE	canonical	3	108	junction_6	96.5361187443447	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTTGGAACCTTGGGAC	NA	False	NA	-9	True	ATTAAA	-21	NA	4675361	4672618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675121_4675220
ENSMUST00000224897.2	chr19	-	2168	11	FSM	ENSMUSG00000024982.11	ENSMUST00000224897.2	2168	11	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_6	59.8815497461447	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCATTGTTTTTAGTT	7439	False	NA	-7	True	AATAAA	-38	NA	55304464	55286732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304227
ENSMUST00000224905.2	chr17	+	1906	4	FSM	ENSMUSG00000037089.12	ENSMUST00000224905.2	1906	4	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	17.6823829464998	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTTTTGGTTGGCAT	NA	False	NA	9	True	ATTAAA	-19	NA	45874799	45878596	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45877234
ENSMUST00000224917.2	chr13	-	464	4	FSM	ENSMUSG00000114353.2	ENSMUST00000224917.2	464	4	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	5.73488351136175	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATACTGGAGAGAAACCTT	NA	False	NA	NA	False	NA	NA	NA	66950624	66941415	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_66941596_66942701_66942763_66942962_66943090_66950528
ENSMUST00000224918.2	chr13	+	1001	6	FSM	ENSMUSG00000021488.9	ENSMUST00000224918.2	1001	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_5	91.9469412215545	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTGTCTTTTTTTTC	NA	False	NA	NA	False	AATACA	-15	NA	55359631	55388660	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_55359814_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
ENSMUST00000224947.2	chr17	+	2016	14	FSM	ENSMUSG00000019487.12	ENSMUST00000224947.2	2016	14	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_12	68.855048845232	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTGGAGTCTGCACCGC	NA	False	NA	13	True	ATTAAA	-23	NA	57556454	57570427	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57556572_57557741_57557858_57557954_57558012_57560261_57560410_57560496_57560560_57561056_57561162_57561259_57561389_57562017_57562165_57562272_57562468_57564234_57564345_57568289_57568423_57568639_57568789_57569353_57569473_57569999
ENSMUST00000224975.2	chr14	-	2727	13	FSM	ENSMUSG00000021814.18	ENSMUST00000224975.2	2727	13	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_12	241.43268845696	1099	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCTTTTGACCTAGAGTA	8200	False	NA	-1	True	AATAAA	-24	NA	20529979	20505344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529847
ENSMUST00000225023.2	chr14	+	1613	5	FSM	ENSMUSG00000025290.18	ENSMUST00000225023.2	1613	5	0	0	0	0	multi-exon	FALSE	canonical	3	4092	junction_4	3560.754932244	87040	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATCTTGGGACTGGAGAG	NA	False	NA	NA	False	AATAAA	-20	NA	24540785	24547027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545842
ENSMUST00000225035.2	chr13	-	571	4	FSM	ENSMUSG00000021764.9	ENSMUST00000225035.2	571	4	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	707.770364517256	2536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACTTGGCAGTTTCTA	NA	False	NA	-18	True	AATAAA	-19	NA	114524599	114425183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114524494
ENSMUST00000225080.2	chr17	-	2412	10	FSM	ENSMUSG00000012296.17	ENSMUST00000225080.2	2412	10	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_7	91.006850915633	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCTTAATTTCTTTCTC	5833	False	NA	-33	True	AATAAA	-15	NA	46593925	46568802	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46593271_46593366_46593885
ENSMUST00000225141.2	chr19	+	1209	10	FSM	ENSMUSG00000024911.8	ENSMUST00000225141.2	1209	10	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_5	12.1837779216647	1047	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGGTCCTTGTTCCAGG	NA	False	NA	17	True	AATAAA	-17	NA	5510643	5515079	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513333_5513631_5513741_5513814_5513879_5514156_5514244_5514361_5514460_5514952
ENSMUST00000225251.2	chr14	-	2192	11	FSM	ENSMUSG00000022052.10	ENSMUST00000225251.2	2192	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	291.951776839943	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGAATCTGGTTTTCTTT	NA	False	NA	-5	True	AATAAA	-13	NA	67309631	67253122	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_67254103_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67276323_67276422_67299885_67299948_67307683_67307759_67309538
ENSMUST00000225294.2	chr14	-	1191	5	FSM	ENSMUSG00000033111.17	ENSMUST00000225294.2	1191	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	54.4196655631032	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGGCCCTCTTGAGTCTC	NA	False	NA	-8	True	AATAAA	-18	NA	10185505	10167783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185429
ENSMUST00000225317.2	chr14	+	706	5	FSM	ENSMUSG00000053453.10	ENSMUST00000225317.2	706	5	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	153.04309033733	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCTTTAAAACCACTGAA	NA	False	NA	NA	False	AATAAA	-16	NA	8508528	8518822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_8508579_8515106_8515225_8516224_8516353_8516600_8516688_8518499
ENSMUST00000225355.2	chr14	-	2771	15	FSM	ENSMUSG00000022031.7	ENSMUST00000225355.2	2771	15	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_14	90.9467493893531	914	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCGTCGTGTGGTGCTTT	3467	False	NA	NA	False	AATAAA	-16	NA	65830501	65767897	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830430
ENSMUST00000225361.2	chr14	+	1609	11	FSM	ENSMUSG00000000365.10	ENSMUST00000225361.2	1609	11	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_4	33.16700167335	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTCCTGCCTCTTGCTT	NA	False	NA	NA	False	AATAAA	-15	NA	56640156	56679370	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987
ENSMUST00000225367.2	chr13	+	1178	1	FSM	ENSMUSG00000047789.6	ENSMUST00000225367.2	1178	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112797284	112798462	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_112797300_112798500
ENSMUST00000225401.2	chr14	+	951	9	FSM	ENSMUSG00000053453.10	ENSMUST00000225401.2	951	9	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	279.504472236134	1070	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508547	8520749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_8508579_8512131_8512210_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
ENSMUST00000225410.2	chr13	-	974	6	FSM	ENSMUSG00000060739.9	ENSMUST00000225410.2	974	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	355.64420422664	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGGGGCATAACGGTTTA	NA	False	NA	NA	False	AATAAA	-28	NA	97274360	97267491	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_97267737_97268350_97268463_97270046_97270227_97271801_97271953_97272028_97272217_97274262
ENSMUST00000225476.2	chr19	-	1455	8	FSM	ENSMUSG00000024889.6	ENSMUST00000225476.2	1455	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	109.573011722592	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTTGGAACCTTGGGAC	NA	False	NA	-9	True	ATTAAA	-21	NA	4675669	4672618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674687_4674792_4675040_4675125_4675220_4675324_4675460
ENSMUST00000225490.2	chr13	+	1771	6	FSM	ENSMUSG00000035958.4	ENSMUST00000225490.2	1771	6	0	0	0	0	multi-exon	FALSE	canonical	3	768	junction_4	61.475198251002	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACGACTTTTTTCTTCAT	NA	False	NA	20	True	AATAAA	-20	NA	25015926	25026135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_25016079_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
ENSMUST00000225542.2	chr13	-	1153	3	FSM	ENSMUSG00000114839.2	ENSMUST00000225542.2	1153	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTGTCCAAAGACATAAAGG	NA	False	NA	NA	False	NA	NA	NA	66889377	66886434	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_66887397_66888983_66889042_66889244
ENSMUST00000225585.2	chr16	+	1705	2	FSM	ENSMUSG00000079737.5	ENSMUST00000225585.2	1705	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTACTTTGGTATCTTAA	NA	False	NA	NA	False	AATAAA	-1	NA	13489792	13496252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_13489943_13494697
ENSMUST00000225605.2	chr13	+	1539	4	FSM	ENSMUSG00000071252.7	ENSMUST00000225605.2	1539	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	17.5562587763516	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACACAATGTTTTTTCATT	NA	False	NA	NA	False	AATAAA	-20	NA	77283672	77341833	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_77283750_77322971_77323104_77331719_77331889_77340672
ENSMUST00000225612.2	chr14	+	550	6	FSM	ENSMUSG00000021774.14	ENSMUST00000225612.2	550	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	122.433002086856	2818	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGGACCAAGAGATACGC	NA	False	NA	NA	False	NA	NA	NA	4137951	4186327	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_4138010_4138657_4138747_4143265_4143317_4184427_4184561_4185274_4185423_4186256
ENSMUST00000225639.2	chr14	+	1269	1	FSM	ENSMUSG00000021939.9	ENSMUST00000225639.2	1269	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	322	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAACTCA	NA	False	NA	NA	False	NA	NA	NA	63359962	63361231	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_63360000_63361200
ENSMUST00000225674.2	chr13	-	2704	16	FSM	ENSMUSG00000021546.19	ENSMUST00000225674.2	2704	16	0	0	0	0	multi-exon	FALSE	canonical	3	1429	junction_15	1661.36162897252	4439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	5126	False	NA	-23	True	AATAAA	-15	NA	58549955	58539052	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
ENSMUST00000225699.2	chr14	-	2455	7	FSM	ENSMUSG00000040123.18	ENSMUST00000225699.2	2455	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	29.1547594742265	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACCAAAAAGAAGGAAA	8840	False	NA	NA	False	NA	NA	NA	57049154	57030784	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_57031958_57034060_57034268_57035141_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
ENSMUST00000225707.2	chr13	-	686	6	FSM	ENSMUSG00000021764.9	ENSMUST00000225707.2	686	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	793.529986830996	24939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACTTGGCAGTTTCTA	NA	False	NA	-18	True	AATAAA	-19	NA	114524585	114425183	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114487983_114488063_114523943_114523994_114524494
ENSMUST00000225735.2	chr14	+	2377	1	FSM	ENSMUSG00000021748.10	ENSMUST00000225735.2	2377	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	267	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAGGAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	14296810	14299187	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_14296800_14299200
ENSMUST00000225765.2	chr14	-	899	4	FSM	ENSMUSG00000021947.12	ENSMUST00000225765.2	899	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10.3387082795139	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAACAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57635953	57579080	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_57579656_57600378_57600506_57620214_57620323_57635864
ENSMUST00000225815.2	chr13	+	2447	4	FSM	ENSMUSG00000035367.10	ENSMUST00000225815.2	2447	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	162.181653983701	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATGTGAAAGAATGTT	NA	False	NA	16	True	AATAAA	-29	NA	58550513	58557906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_58550604_58552384_58552470_58554815_58554905_58555723
ENSMUST00000225828.2	chr13	+	3594	3	FSM	ENSMUSG00000035367.10	ENSMUST00000225828.2	3594	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	177.5	942	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCCGTGGTCATGG	NA	False	NA	5	True	NA	NA	NA	58550061	58558958	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_58550332_58554815_58554905_58555723
ENSMUST00000225850.2	chr13	-	1918	3	FSM	ENSMUSG00000044792.8	ENSMUST00000225850.2	1918	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	208.5	752	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGGTTCCTTTTCTTGTT	NA	False	NA	1	True	ATTAAA	-21	NA	59917602	59903224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_59904818_59910449_59910610_59917437
ENSMUST00000225857.2	chr14	+	1962	14	FSM	ENSMUSG00000021957.8	ENSMUST00000225857.2	1962	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	577.508113624194	8875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCAGACTCTTTTTTTTT	NA	False	NA	38	True	AATATA	-21	NA	30279565	30295581	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_30279651_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
ENSMUST00000225972.2	chr13	+	2097	3	FSM	ENSMUSG00000071180.6	ENSMUST00000225972.2	2097	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	82	1144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCCTGAGTTTTTGTCT	NA	False	NA	NA	False	AATAAA	-44	NA	108181022	108185706	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_108181243_108182958_108183103_108183973
ENSMUST00000225990.2	chr13	-	1159	11	FSM	ENSMUSG00000069089.9	ENSMUST00000225990.2	1159	11	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_6	227.413741889095	1373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGATTTATGATTAGAG	NA	False	NA	-29	True	AATAAA	-3	NA	100867408	100839817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
ENSMUST00000225992.2	chr13	+	616	3	FSM	ENSMUSG00000071252.7	ENSMUST00000225992.2	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	11	266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGAGTGACTTACACTGT	NA	False	NA	NA	False	AATAAA	-17	NA	77283669	77332123	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_77283750_77322971_77323104_77331719
ENSMUST00000226053.2	chr17	+	2270	16	FSM	ENSMUSG00000002833.12	ENSMUST00000226053.2	2270	16	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_6	104.875926694356	2103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAAAAAGAAACAGCTTT	NA	False	NA	NA	False	TATAAA	-10	NA	56386633	56407592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403847_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
ENSMUST00000226069.2	chr19	+	1599	4	FSM	ENSMUSG00000024983.11	ENSMUST00000226069.2	1599	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	51.1620519091597	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATCATGCATCTTTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	55304758	55355935	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55354724
ENSMUST00000226072.2	chr14	+	578	3	FSM	ENSMUSG00000063787.5	ENSMUST00000226072.2	578	3	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	962	24707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCCATTTCTTCTAATT	NA	False	NA	33	True	AATAAA	-16	NA	20753125	20754493	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_20753266_20753343_20753477_20754188
ENSMUST00000226086.2	chr17	+	850	4	FSM	ENSMUSG00000037089.12	ENSMUST00000226086.2	850	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	186.912338335976	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAGCCAGCTCTAATGG	NA	False	NA	7	True	AATAAA	-16	NA	45874885	45876981	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45876589
ENSMUST00000226100.2	chr13	+	1476	8	FSM	ENSMUSG00000021661.17	ENSMUST00000226100.2	1476	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	57.4651624722247	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399646	98410426	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_98399985_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98409885
ENSMUST00000226168.2	chr14	+	828	5	FSM	ENSMUSG00000022210.8	ENSMUST00000226168.2	828	5	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	5.40254569624358	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTAGTCTCTGGGTCCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	55716331	55725034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724621_55724716
ENSMUST00000226256.2	chr14	+	1455	1	FSM	ENSMUSG00000022109.7	ENSMUST00000226256.2	1455	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	106	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	73747471	73748926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_73747500_73748900
ENSMUST00000226290.2	chr14	-	1241	2	FSM	ENSMUSG00000021917.17	ENSMUST00000226290.2	1241	2	0	0	0	0	multi-exon	FALSE	canonical	3	1787	junction_1	0	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACATTTGTTTTCTTTT	NA	False	NA	-6	True	AATAAA	-15	NA	30723326	30721784	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_30722861_30723161
ENSMUST00000226335.2	chr16	+	1189	4	FSM	ENSMUSG00000022946.11	ENSMUST00000226335.2	1189	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	5.24933858267454	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAAGAAAGCA	NA	False	NA	NA	False	NA	NA	NA	93508818	93537562	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_93508957_93513037_93513201_93536041_93536224_93536856
ENSMUST00000226340.2	chr14	+	935	8	FSM	ENSMUSG00000022111.10	ENSMUST00000226340.2	935	8	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	1942.45800521937	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTGTTGTTTTTGCTA	3059	False	NA	21	True	AATAAA	-17	NA	101903231	101933560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101923006_101923199_101928007_101928084_101932594_101932654_101933337
ENSMUST00000226355.2	chr15	+	767	6	FSM	ENSMUSG00000022338.9	ENSMUST00000226355.2	767	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	386.293670670385	813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCATGAATGAGTTTCAAT	9616	False	NA	1	True	AATAAA	-3	NA	44291487	44299251	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_44291639_44292955_44293033_44294086_44294191_44295833_44295905_44297249_44297370_44299007
ENSMUST00000226363.2	chr15	-	2917	4	FSM	ENSMUSG00000037465.11	ENSMUST00000226363.2	2917	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1037.5311508041	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACAGTGAGTCTGTTGT	1378	False	NA	-10	True	AATAAA	-15	NA	38299326	38294659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38299302
ENSMUST00000226437.2	chr15	+	1662	6	FSM	ENSMUSG00000022257.5	ENSMUST00000226437.2	1662	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	166.723003811712	1034	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAACAGTCGTGGCTCC	111	False	NA	NA	False	ATTAAA	-15	NA	34238294	34284441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_34238569_34272489_34272564_34273373_34273497_34276281_34276381_34277577_34277674_34283445
ENSMUST00000226522.2	chr14	-	2804	5	FSM	ENSMUSG00000049295.18	ENSMUST00000226522.2	2804	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	128.961961446002	999	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTCTGCCTGTGTT	5765	False	NA	-2	True	AATAAA	-25	NA	52252039	52243533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52251962
ENSMUST00000226565.2	chr14	-	1971	10	FSM	ENSMUSG00000021902.8	ENSMUST00000226565.2	1971	10	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	5.27280467453541	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTTGTGAATTGGCTCT	NA	False	NA	3	True	AATAAA	-20	NA	30973272	30959645	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_30960111_30960293_30960440_30961587_30961695_30962230_30962391_30962815_30962941_30963682_30963785_30969999_30970092_30970951_30971005_30971564_30971675_30972661
ENSMUST00000226621.2	chr14	+	634	7	FSM	ENSMUSG00000037628.11	ENSMUST00000226621.2	634	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	78.2254576351089	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAAGTTCTCCAGCATAG	NA	False	NA	2	True	AATAAA	-17	NA	46998051	47008977	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_46998106_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007289_47007394_47008857
ENSMUST00000226659.2	chr14	-	1730	5	FSM	ENSMUSG00000002329.8	ENSMUST00000226659.2	1730	5	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_3	25.3673017879316	3776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGGAAAGACAATTTTC	2342	False	NA	-23	True	AATAAA	-14	NA	55897908	55895350	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897686_55897794
ENSMUST00000226688.2	chr15	+	739	4	FSM	ENSMUSG00000039676.5	ENSMUST00000226688.2	739	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	38.1138644939957	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGCCTCCTTTGAAGCT	-3	True	NA	9	True	AATAAA	-22	NA	9436113	9466124	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_9436254_9457782_9457920_9461742_9461921_9465840
ENSMUST00000226722.2	chr14	-	935	5	FSM	ENSMUSG00000022108.9	ENSMUST00000226722.2	935	5	0	0	0	0	multi-exon	FALSE	canonical	3	633	junction_1	98.2776678599976	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAACCTTTCTTTTTTCTA	NA	False	NA	-19	True	ATTAAA	-25	NA	73605945	73600324	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_73600584_73601981_73602133_73603191_73603303_73603760_73603968_73605738
ENSMUST00000226740.2	chr14	-	1765	15	FSM	ENSMUSG00000042354.8	ENSMUST00000226740.2	1765	15	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_10	235.33125806065	3497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30740975	30734389	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738350_30738769_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
ENSMUST00000226746.2	chr14	-	501	3	FSM	ENSMUSG00000022223.10	ENSMUST00000226746.2	501	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	40.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTGGTACGGGTCCTAGT	NA	False	NA	NA	False	NA	NA	NA	56137668	56136390	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_56136763_56137270_56137378_56137646
ENSMUST00000226753.2	chr14	-	2126	11	FSM	ENSMUSG00000000958.11	ENSMUST00000226753.2	2126	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_10	53.6977653166312	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655136	54606898	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54655113
ENSMUST00000226768.2	chr14	-	2366	4	FSM	ENSMUSG00000006288.9	ENSMUST00000226768.2	2366	4	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_3	1.69967317119759	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGAGAGCTGCTGGTCG	NA	False	NA	-1	True	AATAAA	-18	NA	51022952	51012906	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_51014870_51015213_51015426_51018931_51019065_51022894
ENSMUST00000226782.2	chr14	-	949	4	FSM	ENSMUSG00000021917.17	ENSMUST00000226782.2	949	4	0	0	0	0	multi-exon	FALSE	canonical	3	1717	junction_2	34.7658836600865	12632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACATTTGTTTTCTTTTTG	NA	False	NA	-4	True	AATAAA	-17	NA	30723566	30721782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_30722180_30722634_30722722_30722800_30722861_30723161
ENSMUST00000226816.2	chr15	-	1186	3	FSM	ENSMUSG00000054277.9	ENSMUST00000226816.2	1186	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	31.5	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACGGTTGCCTGTGTTGTC	NA	False	NA	-27	True	AATATA	-15	NA	83189542	83183940	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_83184904_83187303_83187426_83189441
ENSMUST00000226827.2	chr15	+	558	5	FSM	ENSMUSG00000022338.9	ENSMUST00000226827.2	558	5	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_1	272.243457221657	3716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAATTTTTTTATTTTG	9616	False	NA	13	True	AATAAA	-15	NA	44291487	44299263	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_44291567_44292955_44293033_44295833_44295905_44297294_44297370_44299007
ENSMUST00000226832.2	chr14	-	326	2	FSM	ENSMUSG00000022177.10	ENSMUST00000226832.2	326	2	0	0	0	0	multi-exon	FALSE	canonical	3	430	junction_1	0	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCTGGGAGAAGACTTTG	651	False	NA	NA	False	NA	NA	NA	54781292	54779639	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_54779909_54781235
ENSMUST00000226862.2	chr1	-	340	2	FSM	ENSMUSG00000097416.4	ENSMUST00000226862.2	340	2	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTCTTAGCACCATTTT	NA	False	NA	NA	False	NA	NA	NA	191722099	191718792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr1_-_191718987_191721953
ENSMUST00000226955.2	chr15	+	1094	4	FSM	ENSMUSG00000022359.11	ENSMUST00000226955.2	1094	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	30.2103734943259	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAATCTGTGCCCTTTTTT	2694	False	NA	38	True	AATAAA	-28	NA	58004806	58022061	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_58004978_58011729_58011838_58014001_58014053_58021297
ENSMUST00000226980.2	chr14	-	1833	2	FSM	ENSMUSG00000115691.2	ENSMUST00000226980.2	1833	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32039942	32025618	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_32027353_32039843
ENSMUST00000227076.2	chr14	-	865	5	FSM	ENSMUSG00000052584.11	ENSMUST00000227076.2	865	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	35.7587401903367	1343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATACCATGTGCGAGTTA	NA	False	NA	-4	True	AATAAA	-16	NA	76794298	76770255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_76770687_76777345_76777495_76787421_76787495_76793870_76793989_76794204
ENSMUST00000227111.2	chr15	+	478	2	FSM	ENSMUSG00000041841.9	ENSMUST00000227111.2	478	2	0	0	0	0	multi-exon	FALSE	canonical	3	24054	junction_1	0	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTACAGAATCCCCAGCCC	2889	False	NA	NA	False	NA	NA	NA	5146767	5147441	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_5146905_5147100
ENSMUST00000227142.2	chr15	+	786	6	FSM	ENSMUSG00000022359.11	ENSMUST00000227142.2	786	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	23.3203773554375	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATATTGTTTGTTTGTT	2691	False	NA	NA	False	CATAAA	-13	NA	58004803	58018721	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58015992_58016142_58016975_58017101_58018534
ENSMUST00000227173.2	chr15	+	1122	8	FSM	ENSMUSG00000059586.11	ENSMUST00000227173.2	1122	8	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_4	348.219025608766	5045	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATCCTCAGCTCAGCA	NA	False	NA	4	True	AATAAA	-5	NA	59246133	59473521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59368625_59368704_59463545_59463647_59463986_59464094_59473188
ENSMUST00000227211.2	chr14	-	543	5	FSM	ENSMUSG00000022223.10	ENSMUST00000227211.2	543	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	76.1265393933023	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGGCTTCCGCTGTCTC	NA	False	NA	-6	True	AATAAA	-20	NA	56137312	56134739	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_56134892_56135699_56135844_56136640_56136763_56137103_56137187_56137270
ENSMUST00000227242.2	chr14	-	2617	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227242.2	2617	9	0	0	0	0	multi-exon	FALSE	canonical	3	1744	junction_2	852.637149891441	10459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTAGAAGCTGGTGTGT	8748	False	NA	-38	True	AATAAA	-19	NA	52341462	52311001	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUST00000227257.2	chr14	-	622	3	FSM	ENSMUSG00000022193.8	ENSMUST00000227257.2	622	3	0	0	0	0	multi-exon	FALSE	canonical	2	118	junction_1	868	935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGTGGAGTCCACAGTTA	8638	False	NA	-19	True	AATAAA	-16	NA	54855465	54851577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_54851939_54854232_54854279_54855250
ENSMUST00000227278.2	chr16	+	1573	10	FSM	ENSMUSG00000022946.11	ENSMUST00000227278.2	1573	10	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_1	10.3279555898864	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGTAATTGTCATGTGTAT	4549	False	NA	18	True	AATAAA	-21	NA	93595721	93607474	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_93595874_93596794_93596905_93596988_93597136_93598448_93598511_93600349_93600479_93603222_93603360_93604100_93604154_93604705_93604868_93606179_93606310_93606983
ENSMUST00000227371.2	chr15	-	1130	4	FSM	ENSMUSG00000039828.8	ENSMUST00000227371.2	1130	4	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	79.3823378060608	2471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGCATTATTCAGCAATA	NA	False	NA	NA	False	NA	NA	NA	8128693	8121710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_8122600_8123159_8123244_8128439_8128506_8128602
ENSMUST00000227415.2	chr14	+	750	2	FSM	ENSMUSG00000044285.9	ENSMUST00000227415.2	750	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2813	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACTCCAGAAAATCAAATAA	NA	False	NA	NA	False	NA	NA	NA	46321484	46322457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_46321774_46321996
ENSMUST00000227463.2	chr15	+	556	4	FSM	ENSMUSG00000041841.9	ENSMUST00000227463.2	556	4	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_1	9620.00361515294	36626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCTGTGGTGATCTAAG	2304	False	NA	34	True	AATAAA	-15	NA	5146182	5148157	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_5146409_5146768_5146905_5147100_5147186_5148048
ENSMUST00000227478.2	chr15	+	2084	13	FSM	ENSMUSG00000022556.12	ENSMUST00000227478.2	2084	13	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_11	40.4687808343941	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACATACATACATACATATA	7144	False	NA	12	True	NA	NA	NA	76361644	76385172	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384330_76384397_76384466_76384537_76384616
ENSMUST00000227488.2	chr14	+	498	3	FSM	ENSMUSG00000022210.8	ENSMUST00000227488.2	498	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	30.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGAGGGTACTGGTACTGAG	NA	False	NA	NA	False	ATTAAA	-24	NA	55716235	55724614	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55716491_55717482_55717661_55724549
ENSMUST00000227536.2	chr14	-	1301	8	FSM	ENSMUSG00000060373.16	ENSMUST00000227536.2	1301	8	0	0	0	0	multi-exon	FALSE	canonical	3	1725	junction_7	903.44372897739	2214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8784	False	NA	42	True	AATAAA	-18	NA	52341426	52312255	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
ENSMUST00000227540.2	chr15	-	1819	10	FSM	ENSMUSG00000050891.11	ENSMUST00000227540.2	1819	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	38.5140666943045	800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTTGAGTTATCCTTGA	NA	False	NA	-3	True	AATAAA	-16	NA	58805587	58771779	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58792988_58793032_58793122_58793267_58798284_58798335_58800532_58800599_58805527
ENSMUST00000227635.2	chr15	+	925	3	FSM	ENSMUSG00000041841.9	ENSMUST00000227635.2	925	3	0	0	0	0	multi-exon	FALSE	canonical	3	15185	junction_2	4434.5	36152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGTGGTGATCTAAGGT	2297	False	NA	36	True	AATAAA	-17	NA	5146175	5148159	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_5146905_5147100_5147186_5148048
ENSMUST00000227691.2	chr15	+	1945	7	FSM	ENSMUSG00000022339.10	ENSMUST00000227691.2	1945	7	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	13.0894359440479	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAACTGATTTTCTGTGGC	NA	False	NA	NA	False	ATTAAA	-19	NA	44482570	44504911	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_44482766_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
ENSMUST00000227729.2	chr17	+	656	5	FSM	ENSMUSG00000045257.11	ENSMUST00000227729.2	656	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	10.1242283656583	986	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTTGAATTATGTATTG	NA	False	NA	15	True	AATAAA	-18	NA	80597631	80604905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_80597767_80599753_80599808_80601898_80602006_80602941_80603079_80604682
ENSMUST00000227751.2	chr14	-	497	3	FSM	ENSMUSG00000006288.9	ENSMUST00000227751.2	497	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	453.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCTTCCCCTGCCCTGG	NA	False	NA	NA	False	AATGAA	-41	NA	51009763	51003301	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_51003480_51004599_51004728_51009572
ENSMUST00000227806.2	chr2	-	944	3	FSM	ENSMUSG00000115423.3	ENSMUST00000227806.2	944	3	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_1	8.5	1744	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGCTGCCTTCACAAGT	NA	False	NA	NA	False	AATAAA	-21	NA	136733309	136723190	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_136723560_136727392_136727621_136732962
ENSMUST00000227815.2	chr14	+	1270	4	FSM	ENSMUSG00000022111.10	ENSMUST00000227815.2	1270	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2159.4787951417	631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGTTTTAGAACCATTCT	90	False	NA	NA	False	AGTAAA	-14	NA	101891402	101905258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_101891556_101903196_101903326_101903947_101904105_101904427
ENSMUST00000228082.2	chr14	+	881	1	FSM	ENSMUSG00000022070.8	ENSMUST00000228082.2	881	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	107	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAATGCAAATAACACCA	NA	False	NA	NA	False	NA	NA	NA	99283889	99284770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_99283900_99284800
ENSMUST00000228087.2	chr15	-	1694	13	FSM	ENSMUSG00000033565.19	ENSMUST00000228087.2	1694	13	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_12	49.6258221314491	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATTTCCACGTCTGTAT	NA	False	NA	NA	False	AAAAAG	-4	NA	77037954	76967999	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77037729
ENSMUST00000228130.2	chr15	+	654	6	FSM	ENSMUSG00000022338.9	ENSMUST00000228130.2	654	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	414.684747730128	866	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACTCTGTTTATTACTG	9651	False	NA	40	True	AATAAA	-42	NA	44291522	44299290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_44291567_44292955_44293033_44294086_44294191_44295833_44295905_44297294_44297370_44299007
ENSMUST00000228198.2	chr14	-	2498	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228198.2	2498	9	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_5	1148.92795139643	7006	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATAAAAATGGCTTTTA	8754	False	NA	NA	False	GGGGCT	-20	NA	52341456	52311132	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUST00000228232.2	chr14	-	2535	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228232.2	2535	9	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	1522.21910380865	757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8749	False	NA	39	True	AATAAA	-15	NA	52341461	52312258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52334778_52336002_52341345
ENSMUST00000228298.2	chr17	-	502	3	FSM	ENSMUSG00000062012.15	ENSMUST00000228298.2	502	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	39	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTGGTGTTATAACTAT	4879	False	NA	NA	False	NA	NA	NA	23805150	23803763	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_23803913_23804411_23804549_23804934
ENSMUST00000228353.2	chr14	+	692	4	FSM	ENSMUSG00000022210.8	ENSMUST00000228353.2	692	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	31.7525152109596	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCCTAGTCTCTGGG	NA	False	NA	NA	False	AATAAA	-15	NA	55716390	55725028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724716
ENSMUST00000228408.2	chr14	+	415	2	FSM	ENSMUSG00000072571.4	ENSMUST00000228408.2	415	2	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAAGGGGCATCTCATT	NA	False	NA	NA	False	NA	NA	NA	52254350	52254879	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_52254399_52254512
ENSMUST00000228414.2	chr14	-	516	4	FSM	ENSMUSG00000010376.16	ENSMUST00000228414.2	516	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	873.770501269578	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGGTGCAGTGTTCCTG	NA	False	NA	-134	True	NA	NA	NA	55909334	55899842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55900083_55900871_55900955_55901268_55901379_55909251
ENSMUST00000228503.2	chr15	+	1064	3	FSM	ENSMUSG00000115367.2	ENSMUST00000228503.2	1064	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	6	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTTCTGCCGTCACCTG	NA	False	NA	NA	False	AATAAA	-18	NA	40026002	40031472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_40026222_40028595_40028677_40030708
ENSMUST00000228505.2	chr14	+	1591	4	FSM	ENSMUSG00000115483.2	ENSMUST00000228505.2	1591	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	11.5854314646552	573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAGCTCTAGAAAACA	NA	False	NA	NA	False	AATAAA	-18	NA	43132674	43163468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_43132821_43157302_43157435_43158114_43158297_43162337
ENSMUST00000228538.3	chr15	-	915	12	FSM	ENSMUSG00000050891.11	ENSMUST00000228538.3	915	12	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	18.2181455270914	1592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58805576	58772822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58795753_58795818_58798284_58798335_58800532_58800599_58805527
ENSMUST00000228567.2	chr14	+	1059	1	FSM	ENSMUSG00000000959.8	ENSMUST00000228567.2	1059	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATGAAAAAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	54598290	54599349	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_54598300_54599300
ENSMUST00000228580.2	chr14	-	2812	4	FSM	ENSMUSG00000049295.18	ENSMUST00000228580.2	2812	4	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_3	140.753527684231	992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	4726	False	NA	-7	True	AATAAA	-20	NA	52258158	52243538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52257979
ENSMUST00000228595.2	chr15	+	458	1	FSM	ENSMUSG00000022354.5	ENSMUST00000228595.2	458	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	197	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGCCTGATTTTACAGATA	2868	False	NA	NA	False	NA	NA	NA	58805656	58806114	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_58805700_58806100
ENSMUST00000228672.2	chr14	+	2173	15	FSM	ENSMUSG00000036023.7	ENSMUST00000228672.2	2173	15	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_7	45.539397610134	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045402	51058757	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
ENSMUST00000228675.2	chr14	+	897	11	FSM	ENSMUSG00000022024.11	ENSMUST00000228675.2	897	11	0	0	0	0	multi-exon	FALSE	canonical	3	1684	junction_7	92.1325132621487	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCAAAGAAGAAGAAAAG	NA	False	NA	16	True	NA	NA	NA	79825248	79862343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280
ENSMUST00000228719.2	chr14	+	710	3	FSM	ENSMUSG00000000959.8	ENSMUST00000228719.2	710	3	0	0	0	0	multi-exon	FALSE	canonical	3	548	junction_2	18	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCCCTGTCTTGTCTGGG	1486	False	NA	21	True	ATTAAA	-44	NA	54605087	54606094	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_54605150_54605249_54605413_54605609
ENSMUST00000228736.2	chr14	-	702	4	FSM	ENSMUSG00000021917.17	ENSMUST00000228736.2	702	4	0	0	0	0	multi-exon	FALSE	canonical	3	1717	junction_2	34.7658836600865	11553	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACATTTGTTTTCTTTTT	NA	False	NA	-5	True	AATAAA	-16	NA	30723320	30721783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_30722180_30722634_30722722_30722800_30722861_30723161
ENSMUST00000228748.2	chr14	-	1691	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228748.2	1691	9	0	0	0	0	multi-exon	FALSE	canonical	3	1620	junction_2	876.028386740407	10111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGAAGGAAAGACAATT	8746	False	NA	-17	True	AATAAA	-21	NA	52341464	52311908	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
ENSMUST00000228767.2	chr14	-	1008	4	FSM	ENSMUSG00000021917.17	ENSMUST00000228767.2	1008	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	828.969775618441	8720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACATTTGTTTTCTTTTTG	NA	False	NA	-4	True	AATAAA	-17	NA	30723629	30721782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_30722180_30722634_30722718_30722800_30722861_30723161
ENSMUST00000228826.2	chr14	-	2492	16	FSM	ENSMUSG00000040472.16	ENSMUST00000228826.2	2492	16	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_15	120.970777003741	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAAAAGAAAAGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	55959633	55953333	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
ENSMUST00000228899.2	chr14	-	2153	15	FSM	ENSMUSG00000040472.16	ENSMUST00000228899.2	2153	15	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_14	124.625418346175	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGCCCTGACAACACTT	NA	False	NA	1	True	AATAAA	-39	NA	55959638	55953761	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
ENSMUST00000228935.2	chr2	+	534	4	FSM	ENSMUSG00000026644.8	ENSMUST00000228935.2	534	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	3.77123616632825	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGTCTGTGTATGGAT	1038	False	NA	NA	False	AATAAA	-16	NA	3337204	3342030	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_3337259_3341369_3341491_3341591_3341655_3341734
ENSMUST00000228973.2	chr15	-	889	1	FSM	ENSMUSG00000003360.16	ENSMUST00000228973.2	889	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAATTAAAAAAAAAAAACAA	6994	False	NA	NA	False	NA	NA	NA	98560775	98559886	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98559900_98560800
ENSMUST00000228977.2	chr15	-	1250	2	FSM	ENSMUSG00000091780.4	ENSMUST00000228977.2	1250	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCTGTGCATGTGCTCTG	NA	False	NA	-10	True	ATTAAA	-11	NA	89258049	89255842	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_89256669_89257625
ENSMUST00000229019.2	chr15	-	941	10	FSM	ENSMUSG00000115987.2	ENSMUST00000229019.2	941	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_8	311.796586112021	1051	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9671	False	NA	-25	True	AATAAA	-17	NA	76510206	76506308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508919_76509333_76509406_76510188
ENSMUST00000229055.2	chr15	-	2212	5	FSM	ENSMUSG00000054967.8	ENSMUST00000229055.2	2212	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	6.04152298679729	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGATGGCTCTGAGTTTGT	8485	False	NA	NA	False	ATTAAA	-24	NA	76809648	76794570	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76796376_76801489_76801604_76801834_76801962_76802168_76802262_76809575
ENSMUST00000229071.2	chr15	+	1198	8	FSM	ENSMUSG00000036167.17	ENSMUST00000229071.2	1198	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	58.0576771628957	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAAAAGCAGCTCTG	NA	False	NA	NA	False	NA	NA	NA	93296312	93387295	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_93296343_93308552_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
ENSMUST00000229085.2	chr15	-	1270	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229085.2	1270	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	151.287309447951	659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8894	False	NA	-22	True	AATAAA	-22	NA	75801627	75796524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800362_75800740_75800899_75801567
ENSMUST00000229101.2	chr16	+	1358	11	FSM	ENSMUSG00000055447.20	ENSMUST00000229101.2	1358	11	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	27.0739727413618	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49675995	49731444	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_49676196_49688127_49688476_49689380_49689444_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49731231
ENSMUST00000229140.2	chr15	+	982	6	FSM	ENSMUSG00000022546.6	ENSMUST00000229140.2	982	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	4.40908153700972	211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGGTGGCTGCCTGGGT	5989	False	NA	2	True	AATAAA	-18	NA	76582410	76583848	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76582583_76582655_76582793_76582914_76583090_76583195_76583352_76583435_76583549_76583619
ENSMUST00000229159.2	chr15	+	628	5	FSM	ENSMUSG00000068220.7	ENSMUST00000229159.2	628	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1006.87148509629	9242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAATCCAGCCCTTTCATG	NA	False	NA	9	True	AATAAA	-20	NA	78810925	78814391	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_78811005_78812169_78812250_78812764_78812868_78813832_78814005_78814197
ENSMUST00000229183.2	chr15	+	1020	5	FSM	ENSMUSG00000003970.10	ENSMUST00000229183.2	1020	5	0	0	0	0	multi-exon	FALSE	canonical	3	10804	junction_2	302.309754225695	266450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	False	NA	34	True	AATAAA	-18	NA	76788301	76790514	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
ENSMUST00000229206.2	chr16	+	1316	11	FSM	ENSMUSG00000055447.20	ENSMUST00000229206.2	1316	11	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_9	24.8766959220874	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49676007	49731444	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49729065_49729099_49731231
ENSMUST00000229245.2	chr15	-	593	4	FSM	ENSMUSG00000116295.2	ENSMUST00000229245.2	593	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	294.920328224421	1036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97065123	97054909	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_97055131_97059094_97059277_97064383_97064508_97065057
ENSMUST00000229261.2	chr15	-	1631	8	FSM	ENSMUSG00000115987.2	ENSMUST00000229261.2	1631	8	0	0	0	0	multi-exon	FALSE	canonical	3	892	junction_7	94.9343489588721	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGGGCAGCTATACTG	9591	False	NA	-24	True	AATAAA	-18	NA	76510286	76506307	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188
ENSMUST00000229275.2	chr15	+	516	5	FSM	ENSMUSG00000056851.15	ENSMUST00000229275.2	516	5	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	63.021325755652	576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGCTATATACCCTCAGT	2147	False	NA	12	True	AATAAA	-25	NA	102379111	102383199	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009
ENSMUST00000229289.2	chr15	-	1223	10	FSM	ENSMUSG00000022570.8	ENSMUST00000229289.2	1223	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	159.308071761587	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8885	False	NA	-22	True	AATAAA	-22	NA	75801636	75796524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798973_75800740_75800899_75801567
ENSMUST00000229348.2	chr15	-	1069	8	FSM	ENSMUSG00000023755.11	ENSMUST00000229348.2	1069	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	69.0784824290016	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	-22	True	AATAAA	-20	NA	98779157	98775658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777645_98777726_98778388_98778461_98779030
ENSMUST00000229385.2	chr15	-	1291	9	FSM	ENSMUSG00000022474.16	ENSMUST00000229385.2	1291	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	470.161341988046	4633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845043	81835308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81838572_81838652_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
ENSMUST00000229408.2	chr15	-	1931	12	FSM	ENSMUSG00000022429.12	ENSMUST00000229408.2	1931	12	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	21.834085113127	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAATATAAGACTATTTA	NA	False	NA	NA	False	AATAAA	-10	NA	79489300	79445811	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79475805_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
ENSMUST00000229424.2	chr15	+	542	4	FSM	ENSMUSG00000000346.10	ENSMUST00000229424.2	542	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	563.556760426332	2571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAACTTCTTCATGGGTGG	NA	False	NA	NA	False	NA	NA	NA	100513985	100517329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_100514082_100514793_100514913_100515805_100516052_100517248
ENSMUST00000229428.2	chr15	+	1455	8	FSM	ENSMUSG00000052369.9	ENSMUST00000229428.2	1455	8	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	28.3318527024094	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCACTGTCTCTGACTG	7680	False	NA	10	True	AATAAA	-16	NA	97862109	97868155	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_97862217_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
ENSMUST00000229520.3	chr19	-	406	1	FSM	ENSMUSG00000118211.2	ENSMUST00000229520.3	406	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	355	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTATATTTTTGTTTTCA	NA	False	NA	NA	False	AATACA	-42	NA	37402295	37401889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_37401900_37402300
ENSMUST00000229545.2	chr15	-	1136	8	FSM	ENSMUSG00000115987.2	ENSMUST00000229545.2	1136	8	0	0	0	0	multi-exon	TRUE	canonical	3	892	junction_7	94.893495615896	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCGCCCTGTGTGATCT	9608	False	NA	-3	True	AATAAA	-39	NA	76510269	76506286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76506551_76506670_76506909_76507370_76507695_76508285_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188
ENSMUST00000229618.2	chr15	+	1576	14	FSM	ENSMUSG00000056851.15	ENSMUST00000229618.2	1576	14	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	146.176678378513	2510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	2123	False	NA	5	True	ATTAAA	-5	NA	102379087	102407316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
ENSMUST00000229635.2	chr15	+	339	2	FSM	ENSMUSG00000116223.2	ENSMUST00000229635.2	339	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGTATCGGTGACACAATA	1668	False	NA	NA	False	NA	NA	NA	98832527	98837343	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_98832708_98837184
ENSMUST00000229641.2	chr15	-	1355	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229641.2	1355	11	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_10	74.8304750753328	1304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8840	False	NA	-22	True	AATAAA	-22	NA	75801681	75796524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801567
ENSMUST00000229648.2	chr15	+	1222	9	FSM	ENSMUSG00000037353.10	ENSMUST00000229648.2	1222	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	16.3587705833904	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTTTTATTGTGATGTA	2419	False	NA	NA	False	NA	NA	NA	100366987	100375956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_100367020_100367565_100367718_100369540_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
ENSMUST00000229680.2	chr16	-	1066	4	FSM	ENSMUSG00000022671.14	ENSMUST00000229680.2	1066	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	282.609664063744	1524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTCTATGTGGAGTCCT	NA	False	NA	-7	True	ATTAAA	-17	NA	15681174	15666309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_15666594_15678561_15678635_15680261_15680408_15680611
ENSMUST00000229702.2	chr15	-	394	2	FSM	ENSMUSG00000116097.2	ENSMUST00000229702.2	394	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGCTGTGGTCGGAGTAT	2853	False	NA	-3	True	NA	NA	NA	78465816	78458610	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_78458873_78465684
ENSMUST00000229709.2	chr16	-	301	2	FSM	ENSMUSG00000115907.2	ENSMUST00000229709.2	301	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCCATTAAAAATTTGAAC	NA	False	NA	NA	False	NA	NA	NA	13557068	13555715	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_13555865_13556916
ENSMUST00000229739.2	chr15	+	1311	2	FSM	ENSMUSG00000071711.13	ENSMUST00000229739.2	1311	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAACATTTGTGGTTGT	NA	False	NA	NA	False	AATAAA	-10	NA	78294181	78298206	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_78294865_78297578
ENSMUST00000229826.2	chr15	-	1319	8	FSM	ENSMUSG00000018865.10	ENSMUST00000229826.2	1319	8	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_2	10.0285307284481	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGTGCATTTCCAGGGG	NA	False	NA	NA	False	AATAAA	-16	NA	83989810	83961345	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_83961784_83962969_83963099_83964387_83964527_83970800_83970896_83974159_83974287_83974792_83974874_83976490_83976622_83989631
ENSMUST00000229854.2	chr15	+	1499	14	FSM	ENSMUSG00000056851.15	ENSMUST00000229854.2	1499	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_11	165.819713890698	1158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	2254	False	NA	5	True	ATTAAA	-5	NA	102379218	102407316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
ENSMUST00000229951.2	chr15	-	1405	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229951.2	1405	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	184.382889661704	715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8946	False	NA	-22	True	AATAAA	-22	NA	75801575	75796524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798138_75798307_75798591_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
ENSMUST00000229961.2	chr16	+	1162	4	FSM	ENSMUSG00000022516.11	ENSMUST00000229961.2	1162	4	0	0	0	0	multi-exon	FALSE	canonical	1	32	junction_3	242.27670131484	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCCATGGCCACATCTTT	95	False	NA	25	True	AATAAA	-31	NA	4756975	4758896	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_4757158_4757241_4757503_4758059_4758180_4758297
ENSMUST00000229999.2	chr15	-	510	4	FSM	ENSMUSG00000116295.2	ENSMUST00000229999.2	510	4	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_3	214.206027511418	2669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCTCCGCTTTCCTCCCG	NA	False	NA	NA	False	NA	NA	NA	97065124	97059069	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_97059277_97059835_97059964_97064383_97064492_97065057
ENSMUST00000230011.2	chr15	-	1772	9	FSM	ENSMUSG00000022429.12	ENSMUST00000230011.2	1772	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	34.5377963251855	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTACAGGTGATCTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	79489310	79445770	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469298_79469373_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
ENSMUST00000230086.2	chr15	-	1963	16	FSM	ENSMUSG00000022464.15	ENSMUST00000230086.2	1963	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	409.635849125646	542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGCCGTGCAGTGCAGT	NA	False	NA	-12	True	ATTAAA	-23	NA	96929092	96894648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96929014
ENSMUST00000230105.2	chr15	+	1981	4	FSM	ENSMUSG00000022463.9	ENSMUST00000230105.2	1981	4	0	0	0	0	multi-exon	FALSE	canonical	3	662	junction_2	39.6176167324027	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTTG	2243	False	NA	NA	False	NA	NA	NA	82031451	82058095	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_82031692_82053938_82054356_82055302_82055485_82056953
ENSMUST00000230171.2	chr15	-	1283	11	Antisense	novelGene_ENSMUSG00000046434.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCCTACCTTCTGCTCG	8196	False	NA	NA	False	NA	NA	NA	103155119	103148858	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr15_-_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103154772_103154849_103154971
ENSMUST00000230177.2	chr15	+	1680	6	FSM	ENSMUSG00000059895.14	ENSMUST00000230177.2	1680	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	34.6028900527109	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTGTGAAGAGTGTTAT	NA	False	NA	20	True	AATAAA	-14	NA	73596646	73629076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_73596698_73622977_73623877_73625604_73625698_73627142_73627274_73627876_73627952_73628645
ENSMUST00000230192.2	chr15	+	2665	17	FSM	ENSMUSG00000033128.10	ENSMUST00000230192.2	2665	17	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_10	123.234516649152	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTAGCTGCTCTTGTCA	NA	False	NA	14	True	AATAAA	-14	NA	78761750	78778781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_78761818_78765237_78765323_78766327_78766404_78767467_78767567_78768284_78768409_78769455_78769557_78770063_78770145_78772310_78772449_78772617_78772700_78773202_78773311_78773919_78774069_78775636_78775702_78776113_78776287_78776652_78776841_78777366_78777537_78777738_78777850_78777933
ENSMUST00000230229.2	chr15	-	612	5	FSM	ENSMUSG00000022474.16	ENSMUST00000230229.2	612	5	0	0	0	0	multi-exon	FALSE	canonical	3	1051	junction_1	37.9300342736465	474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTACTGTGTGTCATTTC	NA	False	NA	-4	True	NA	NA	NA	81845034	81839743	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
ENSMUST00000230274.2	chr15	+	1111	4	FSM	ENSMUSG00000063236.7	ENSMUST00000230274.2	1111	4	0	0	0	0	multi-exon	FALSE	canonical	1	74	junction_1	105.909814884594	1607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGGATGGTGTGAGAGA	NA	False	NA	21	True	AATAAA	-13	NA	76832721	76834929	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76833120_76833267_76833353_76833743_76833891_76834448
ENSMUST00000230349.2	chr15	-	473	2	FSM	ENSMUSG00000036678.9	ENSMUST00000230349.2	473	2	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_1	0	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACCTCATTTATCCCTA	NA	False	NA	NA	False	NA	NA	NA	102259122	102258234	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_102258516_102258930
ENSMUST00000230411.2	chr15	+	1900	9	FSM	ENSMUSG00000016619.11	ENSMUST00000230411.2	1900	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	200.475021823169	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTTCTCCCTTCCTAA	NA	False	NA	23	True	AATAAA	-17	NA	84807649	84824208	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_84807852_84808969_84809098_84811568_84811648_84813572_84813657_84817735_84817920_84819064_84819725_84821687_84821770_84822558_84822678_84823846
ENSMUST00000230445.2	chr15	+	2798	23	FSM	ENSMUSG00000033065.15	ENSMUST00000230445.2	2798	23	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	24.5577830991277	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCGCTCTTGTTATTATCT	6337	False	NA	11	True	AATAAA	-23	NA	97990524	98030332	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_97990547_98010001_98010128_98016062_98016137_98017273_98017352_98018671_98018862_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
ENSMUST00000230447.2	chr15	+	781	3	FSM	ENSMUSG00000043091.10	ENSMUST00000230447.2	781	3	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_1	2383.5	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACAAAAAGTTTCAGAGC	NA	False	NA	NA	False	NA	NA	NA	98928201	98932783	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_98928306_98931974_98932198_98932329
ENSMUST00000230494.2	chr15	-	382	2	FSM	ENSMUSG00000022450.7	ENSMUST00000230494.2	382	2	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	0	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATTGCACTGGTGAACC	6280	False	NA	-37	True	AATAAA	-26	NA	82238455	82234364	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_82234573_82238281
ENSMUST00000230495.2	chr16	-	1147	3	FSM	ENSMUSG00000022677.16	ENSMUST00000230495.2	1147	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	185.5	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTTGCTTATGGTCATG	NA	False	NA	-8	True	NA	NA	NA	14135208	14117111	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_14118074_14122317_14122452_14135157
ENSMUST00000230512.2	chr15	+	1728	3	FSM	ENSMUSG00000034259.9	ENSMUST00000230512.2	1728	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	318	3346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACTGGACTAATGTCTT	947	False	NA	4	True	NA	NA	NA	76211664	76214873	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76211868_76213229_76213437_76213555
ENSMUST00000230572.2	chr15	-	762	4	FSM	ENSMUSG00000023031.9	ENSMUST00000230572.2	762	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	14.0554457615387	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCTTGCATTTATAAT	7111	False	NA	2	True	AATAAA	-20	NA	100579843	100572301	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_100572599_100573204_100573355_100579023_100579170_100579674
ENSMUST00000230729.2	chr15	+	1062	7	FSM	ENSMUSG00000022471.15	ENSMUST00000230729.2	1062	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	249.016342614072	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTGTGCACTTTTCAGTA	63	False	NA	28	True	AATAAA	-14	NA	81912332	81924285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_81912356_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
ENSMUST00000230736.2	chr15	-	1319	11	FSM	ENSMUSG00000022570.8	ENSMUST00000230736.2	1319	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	183.950428104965	852	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8894	False	NA	-22	True	AATAAA	-22	NA	75801627	75796524	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798138_75798291_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801567
ENSMUST00000230743.2	chr15	-	1314	4	FSM	ENSMUSG00000003355.8	ENSMUST00000230743.2	1314	4	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_2	35.1220095603249	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTATTTTTCACTCGGT	NA	False	NA	NA	False	AATAAA	-19	NA	98626033	98622246	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98622484_98624364_98625180_98625563_98625630_98625837
ENSMUST00000230812.2	chr15	-	2230	15	FSM	ENSMUSG00000036678.9	ENSMUST00000230812.2	2230	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_11	133.897082012375	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGATGTAACTCCGAGTG	NA	False	NA	-5	True	AATAAA	-25	NA	102258913	102246686	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254396_102254921_102254969_102255112_102255205_102255470_102255527_102258387
ENSMUST00000230815.2	chr15	+	1331	1	FSM	ENSMUSG00000055041.9	ENSMUST00000230815.2	1331	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2068	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTAAAAACATGTTATTC	NA	False	NA	NA	False	ATTAAA	-13	NA	76784164	76785495	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_76784200_76785500
ENSMUST00000230868.2	chr15	+	714	3	FSM	ENSMUSG00000032783.10	ENSMUST00000230868.2	714	3	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	11	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAAGACATCTT	NA	False	NA	NA	False	NA	NA	NA	98972867	98973947	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_98972974_98973230_98973380_98973488
ENSMUST00000231024.2	chr15	-	655	3	FSM	ENSMUSG00000116295.2	ENSMUST00000231024.2	655	3	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	244.5	1321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCTGATCATACCATAGC	NA	False	NA	-10	True	AATAAA	-17	NA	97065125	97058813	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_97059277_97064383_97064508_97065057
ENSMUST00000231039.2	chr15	-	3923	15	FSM	ENSMUSG00000022464.15	ENSMUST00000231039.2	3923	15	0	0	0	0	multi-exon	FALSE	canonical	3	1416	junction_8	96.7698721879145	1672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTATGATCTTCTTTCGT	NA	False	NA	-9	True	AATAAA	-19	NA	96917832	96892700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604
ENSMUST00000231066.2	chr15	-	1980	9	FSM	ENSMUSG00000022992.18	ENSMUST00000231066.2	1980	9	0	0	0	0	multi-exon	FALSE	canonical	1	77	junction_8	414.912038870891	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGTGTAAAGTGATCTG	NA	False	NA	-21	True	ATTAAA	-14	NA	98432145	98416700	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429600_98429780_98431398_98431658_98432121
ENSMUST00000231074.2	chr15	+	2692	11	FSM	ENSMUSG00000022385.12	ENSMUST00000231074.2	2692	11	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_6	54.9377829913076	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGACGTGTAGAGCTG	7338	False	NA	30	True	ATTAAA	-41	NA	85744146	85760774	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
ENSMUST00000231141.2	chr15	+	1541	9	FSM	ENSMUSG00000046434.17	ENSMUST00000231141.2	1541	9	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_7	4388.75483480224	1586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	False	NA	-1	True	AATAAA	-17	NA	103148920	103153382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152385_103152456_103152682
ENSMUST00000231152.2	chr15	-	1271	2	FSM	ENSMUSG00000053929.18	ENSMUST00000231152.2	1271	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTTGTTTATTCTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76543956	76542332	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr15_-_76543066_76543418
ENSMUST00000231241.2	chr17	+	1571	7	FSM	ENSMUSG00000036552.20	ENSMUST00000231241.2	1571	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_6	30.7064958744707	666	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGAACTCTATGTTGC	NA	False	NA	5	True	ATTAAA	-18	NA	15273320	15284485	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283863
ENSMUST00000231259.2	chr16	-	1722	7	FSM	ENSMUSG00000004843.8	ENSMUST00000231259.2	1722	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	119.881422895941	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGCCTAACGCGCATCA	NA	False	NA	-8	True	AATAAA	-19	NA	65359406	65336013	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_65337137_65337305_65337413_65342162_65342266_65343734_65343930_65347848_65347941_65350904_65350961_65359360
ENSMUST00000231322.2	chr16	+	1503	6	FSM	ENSMUSG00000055692.22	ENSMUST00000231322.2	1503	6	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_4	34.92506263416	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094540	17096525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
ENSMUST00000231351.2	chr16	-	640	5	FSM	ENSMUSG00000003955.9	ENSMUST00000231351.2	640	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	448.847621693599	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTGTCTTTGTTTTGTT	NA	False	NA	-5	True	AATACA	-14	NA	35891739	35864215	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_35864462_35866748_35866858_35870211_35870321_35872655_35872779_35891686
ENSMUST00000231365.2	chr17	-	1204	2	FSM	ENSMUSG00000062753.15	ENSMUST00000231365.2	1204	2	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCCTCCTTGGGTGGAC	NA	False	NA	49	True	AATAAA	-18	NA	27784097	27782742	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27783385_27783535
ENSMUST00000231380.2	chr16	-	1852	11	FSM	ENSMUSG00000022962.16	ENSMUST00000231380.2	1852	11	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_10	453.295984981116	1060	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTTTGATTTTTTTTTT	NA	False	NA	-2	True	AATAAA	-22	NA	91443813	91430292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
ENSMUST00000231392.2	chr16	+	678	5	FSM	ENSMUSG00000021018.9	ENSMUST00000231392.2	678	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	331.022185812371	475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCTTCTCCATTGTCAT	1345	False	NA	12	True	ATTAAA	-13	NA	20536855	20541014	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_20536917_20537573_20537658_20537740_20537835_20539268_20539353_20540659
ENSMUST00000231414.2	chr16	-	806	8	FSM	ENSMUSG00000022938.9	ENSMUST00000231414.2	806	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_7	10.770329614269	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAATGTCACAGGAGTCT	NA	False	NA	-10	True	AATAAA	-24	NA	97313730	97272289	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_97272424_97276447_97276581_97276934_97277023_97277579_97277631_97279548_97279608_97282986_97283111_97302059_97302204_97313657
ENSMUST00000231468.2	chr16	+	392	3	FSM	ENSMUSG00000075229.12	ENSMUST00000231468.2	392	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	434	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892453	35912481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_35892508_35910270_35910331_35912203
ENSMUST00000231471.2	chr16	-	1215	8	FSM	ENSMUSG00000033809.16	ENSMUST00000231471.2	1215	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	139.403247114701	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGGAACGGACTCTGTG	NA	False	NA	-55	True	NA	NA	NA	20429511	20424268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427491_20427640_20427736_20427837_20429292
ENSMUST00000231509.2	chr16	+	290	2	FSM	ENSMUSG00000022721.20	ENSMUST00000231509.2	290	2	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTTGGGCAAATCTGGGT	1397	False	NA	NA	False	AGTAAA	-15	NA	18067874	18068584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18067898_18068317
ENSMUST00000231517.2	chr16	+	1721	7	FSM	ENSMUSG00000055692.22	ENSMUST00000231517.2	1721	7	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_2	55.7875434124859	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATAGGTGTGTGGGGTTT	NA	False	NA	34	True	AATAAA	-19	NA	17094205	17096521	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_17094333_17094497_17094752_17094825_17095115_17095205_17095457_17095532_17095606_17095714_17095756_17095835
ENSMUST00000231548.2	chr16	-	1110	5	FSM	ENSMUSG00000022760.18	ENSMUST00000231548.2	1110	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	41.2757495389242	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	7275	False	NA	1	True	AATAAA	-19	NA	17348911	17345941	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641_17348722_17348841
ENSMUST00000231579.2	chr16	+	1703	8	FSM	ENSMUSG00000022849.6	ENSMUST00000231579.2	1703	8	0	0	0	0	multi-exon	FALSE	canonical	3	531	junction_3	35.6118531058502	3800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCCAGCCACTTCCAAAT	5404	False	NA	107	True	NA	NA	NA	35590744	35645918	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634425_35637521_35637694_35639048_35639133_35645058_35645170_35645252
ENSMUST00000231621.2	chr16	+	1485	8	FSM	ENSMUSG00000000884.18	ENSMUST00000231621.2	1485	8	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	85.0267664938998	799	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGCCTCAAGGTGGGAAC	NA	False	NA	15	True	AATAAA	-17	NA	18317462	18383290	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18317602_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
ENSMUST00000231656.2	chr16	+	689	4	FSM	ENSMUSG00000021018.9	ENSMUST00000231656.2	689	4	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_2	345.101273380567	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCTTCTCCATTGTCATT	1069	False	NA	13	True	ATTAAA	-14	NA	20536579	20541015	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_20536745_20537573_20537658_20539268_20539353_20540659
ENSMUST00000231660.2	chr16	+	485	2	FSM	ENSMUSG00000097576.3	ENSMUST00000231660.2	485	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAGGGACTTTTATTAAG	NA	False	NA	NA	False	AATAAA	-39	NA	38272751	38273856	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_38272823_38273442
ENSMUST00000231681.2	chr16	-	1156	7	FSM	ENSMUSG00000049916.13	ENSMUST00000231681.2	1156	7	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_4	26.8824602048746	1487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGTTGTATGTCCTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	16943004	16931262	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16942853
ENSMUST00000231690.2	chr16	-	1349	8	FSM	ENSMUSG00000035699.9	ENSMUST00000231690.2	1349	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	14.3370506174793	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACACTGCTTCTGTTGGC	NA	False	NA	-8	True	AATAAA	-27	NA	32306521	32294340	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_32294697_32295190_32295297_32295984_32296132_32296365_32296478_32297122_32297282_32298467_32298623_32304952_32305048_32306302
ENSMUST00000231723.2	chr17	+	1586	11	FSM	ENSMUSG00000116953.2	ENSMUST00000231723.2	1586	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	84.5842183861741	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATTAATGTTTTGGCCCT	NA	False	NA	NA	False	AAAAAG	-18	NA	15199168	15209673	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_15199257_15199762_15199932_15200519_15200660_15201837_15201940_15202561_15202652_15205079_15205178_15206035_15206173_15206979_15207095_15207857_15207961_15208335_15208366_15209159
ENSMUST00000231735.2	chr16	+	1437	8	FSM	ENSMUSG00000022957.21	ENSMUST00000231735.2	1437	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.30945803685667	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTTTGGAGAACTGTG	NA	False	NA	NA	False	TATAAA	-22	NA	91700958	91709224	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_91701102_91701184_91701327_91702174_91702388_91703645_91703768_91705290_91705374_91705653_91705738_91706092_91706267_91708748
ENSMUST00000231737.2	chr16	+	969	1	FSM	ENSMUSG00000116875.2	ENSMUST00000231737.2	969	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	259	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGGGCGTGCTCGCCCTCT	NA	False	NA	NA	False	NA	NA	NA	24348143	24349112	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_24348100_24349100
ENSMUST00000231741.2	chr16	-	1556	5	FSM	ENSMUSG00000116673.2	ENSMUST00000231741.2	1556	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	31.7204586978184	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTTGTAGCTCAGAATGG	NA	False	NA	NA	False	NA	NA	NA	97883650	97866643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_97867866_97868954_97869016_97869203_97869331_97870510_97870552_97883545
ENSMUST00000231753.2	chr17	-	563	5	FSM	ENSMUSG00000062753.15	ENSMUST00000231753.2	563	5	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_3	99.6092365195116	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGTTGCCCTCCTTGGGT	NA	False	NA	45	True	AATAAA	-14	NA	27784691	27782746	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27782991_27783122_27783229_27783358_27783385_27783595_27783725_27784633
ENSMUST00000231756.2	chr16	-	375	1	FSM	ENSMUSG00000116648.2	ENSMUST00000231756.2	375	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2224	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCTGCTCATGTCAAATA	NA	False	NA	NA	False	NA	NA	NA	16637987	16637612	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_16637600_16638000
ENSMUST00000231768.2	chr16	+	1572	8	FSM	ENSMUSG00000022871.14	ENSMUST00000231768.2	1572	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	190.973018716129	2032	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACTGGAAATGAGACTAA	NA	False	NA	35	True	AATAAA	-41	NA	22737083	22758528	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22737345_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
ENSMUST00000231798.2	chr16	+	2883	16	FSM	ENSMUSG00000022855.10	ENSMUST00000231798.2	2883	16	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	119.348341700531	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCTGATAATTTTTCCTC	2371	False	NA	22	True	AATAAA	-22	NA	21828402	21866631	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_21828493_21832873_21833008_21834948_21835016_21837086_21837178_21842389_21842559_21845388_21845490_21846718_21846814_21847290_21847343_21850853_21850915_21855219_21855397_21857286_21857419_21859189_21859394_21860071_21860152_21861719_21861805_21862962_21863059_21865382
ENSMUST00000231849.2	chr16	-	665	2	FSM	ENSMUSG00000097318.3	ENSMUST00000231849.2	665	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGAATTCTCTCCTTG	NA	False	NA	-2	True	ATTAAA	-16	NA	33201045	33200223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_33200729_33200885
ENSMUST00000231904.2	chr16	-	1239	8	FSM	ENSMUSG00000033809.16	ENSMUST00000231904.2	1239	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	139.378650313688	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGGAACGGACTCTGTG	NA	False	NA	-55	True	NA	NA	NA	20429511	20424268	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20429329
ENSMUST00000231913.2	chr16	+	1230	5	FSM	ENSMUSG00000080717.11	ENSMUST00000231913.2	1230	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	45.9292934846597	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	14	True	NA	NA	NA	97798563	97817956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97816865_97816920_97817041
ENSMUST00000231948.2	chr17	-	608	4	FSM	ENSMUSG00000062753.15	ENSMUST00000231948.2	608	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	112.499876543142	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGCCCTCCTTGGGTGG	NA	False	NA	47	True	AATAAA	-16	NA	27784700	27782744	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27782991_27783122_27783229_27783535_27783725_27784633
ENSMUST00000231962.2	chr13	-	769	2	FSM	ENSMUSG00000021760.6	ENSMUST00000231962.2	769	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCATTTTTTTTTCTTTTC	NA	False	NA	NA	False	AATAAA	-29	NA	113182927	113179286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_113179834_113182705
ENSMUST00000231984.2	chr8	-	2905	19	FSM	ENSMUSG00000037300.20	ENSMUST00000231984.2	2905	19	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_6	106.569342173807	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGGTCAGTTTGGTCGTT	NA	False	NA	-8	True	ATTAAA	-16	NA	125448707	125398070	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403187_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125436641_125436713_125439355_125439432_125440927_125441023_125448475
ENSMUST00000231993.2	chr16	-	615	1	FSM	ENSMUSG00000116835.2	ENSMUST00000231993.2	615	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1381	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACGTGATATTTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	33827827	33827212	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_33827200_33827800
ENSMUST00000232036.2	chr16	-	1246	9	FSM	ENSMUSG00000033918.17	ENSMUST00000232036.2	1246	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	583.055301300829	3472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121137	20098569	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_20098836_20101472_20101571_20104514_20104586_20105669_20105820_20106606_20106703_20112103_20112153_20116342_20116484_20116880_20117077_20120958
ENSMUST00000232075.2	chr16	-	2645	8	FSM	ENSMUSG00000004462.8	ENSMUST00000232075.2	2645	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_7	25.2214680179325	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTTTACTGTGCCAGAG	NA	False	NA	NA	False	AATAAA	-15	NA	22676417	22631969	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676244
ENSMUST00000232087.2	chr17	-	1210	4	FSM	ENSMUSG00000116995.2	ENSMUST00000232087.2	1210	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.62466929133727	307	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGGCAC	NA	False	NA	NA	False	NA	NA	NA	3165070	3162064	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_3162848_3163562_3163623_3164462_3164621_3164861
ENSMUST00000232092.2	chr16	+	1627	8	FSM	ENSMUSG00000055692.22	ENSMUST00000232092.2	1627	8	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_2	39.2189042297154	625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094172	17096525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_17094333_17094497_17094622_17094700_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
ENSMUST00000232098.2	chr16	+	1333	7	FSM	ENSMUSG00000022868.7	ENSMUST00000232098.2	1333	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	38.5158697451093	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCATGTTCCTTGTCT	NA	False	NA	22	True	NA	NA	NA	22710788	22718193	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_22710929_22713074_22713186_22713544_22713630_22713943_22714108_22715257_22715360_22716877_22716962_22717546
ENSMUST00000232123.2	chr16	-	675	2	FSM	ENSMUSG00000022706.17	ENSMUST00000232123.2	675	2	0	0	0	0	multi-exon	FALSE	canonical	3	1642	junction_1	0	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACATGTGTTTGGGGTGC	NA	False	NA	NA	False	NA	NA	NA	18695359	18693621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_18694158_18695220
ENSMUST00000232188.2	chr16	+	443	5	FSM	ENSMUSG00000060636.15	ENSMUST00000232188.2	443	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	3515.29062632096	29564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGTATTTTTTTTTC	NA	False	NA	0	True	AATAAA	-15	NA	32876868	32880525	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_32876926_32877505_32877536_32877759_32877913_32879048_32879194_32880467
ENSMUST00000232260.2	chr4	+	896	4	FSM	ENSMUSG00000086290.10	ENSMUST00000232260.2	896	4	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	29.9369708257569	425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035933	132038335	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_+_132036219_132037148_132037215_132037461_132037816_132038144
ENSMUST00000232265.2	chr17	+	1681	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232265.2	1681	5	0	0	0	0	multi-exon	FALSE	canonical	3	3635	junction_2	873.596123789477	17766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTGTAAGGAGCATTCA	NA	False	NA	NA	False	AATAAA	-27	NA	27775547	27782648	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781411
ENSMUST00000232289.2	chr16	-	3276	22	FSM	ENSMUSG00000022962.16	ENSMUST00000232289.2	3276	22	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_21	338.409230453656	1078	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAACTTATCTAGCA	NA	False	NA	NA	False	AATAAA	-12	NA	91443819	91418291	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
ENSMUST00000232321.2	chr16	-	818	6	FSM	ENSMUSG00000023791.19	ENSMUST00000232321.2	818	6	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_5	141.720287891325	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTAGTTTGTCTTCATT	NA	False	NA	0	True	AATAAA	-30	NA	31918558	31903233	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918472
ENSMUST00000232344.2	chr16	+	1580	3	FSM	ENSMUSG00000041774.17	ENSMUST00000232344.2	1580	3	0	0	0	0	multi-exon	TRUE	canonical	3	101	junction_2	5	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGGTTTATAAAGTG	NA	False	NA	12	True	AATAAA	-16	NA	16964839	16966710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_16965011_16965096_16965257_16965461
ENSMUST00000232387.2	chr16	+	546	5	FSM	ENSMUSG00000080717.11	ENSMUST00000232387.2	546	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	48.9508682251909	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGACTGTCTTAGCTACAT	NA	False	NA	NA	False	NA	NA	NA	97798526	97832636	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97816865_97816920_97832442
ENSMUST00000232396.2	chr17	+	1596	8	FSM	ENSMUSG00000116564.2	ENSMUST00000232396.2	1596	8	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_3	41.8120185826896	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATTTGTCTTTTGAA	NA	False	NA	NA	False	AATGAA	-20	NA	17594833	17608016	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325
ENSMUST00000232413.2	chr16	-	529	2	FSM	ENSMUSG00000022748.9	ENSMUST00000232413.2	529	2	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	0	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATTTATGTTTTGTGAT	NA	False	NA	-1	True	AATAAA	-17	NA	57427227	57381795	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_57382126_57427028
ENSMUST00000232484.2	chr16	-	848	7	FSM	ENSMUSG00000033918.17	ENSMUST00000232484.2	848	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	637.544682529956	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTCAGCATCGGCCACCC	NA	False	NA	-122	True	NA	NA	NA	20121129	20098675	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20120958
ENSMUST00000232499.2	chr17	-	640	6	FSM	ENSMUSG00000092074.3	ENSMUST00000232499.2	640	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	3093.1595885114	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTGTATTTTATGTAGC	NA	False	NA	NA	False	AATAAA	-12	NA	6367693	6356621	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_6356874_6358912_6359012_6361567_6361646_6361983_6362108_6365191_6365234_6367648
ENSMUST00000232552.2	chr17	+	917	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232552.2	917	5	0	0	0	0	multi-exon	FALSE	canonical	3	1035	junction_1	1979.76797882984	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCTCCTGCCCCACCCT	NA	False	NA	NA	False	NA	NA	NA	27775614	27781946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_27775724_27778506_27778645_27779901_27779986_27780434_27780486_27781411
ENSMUST00000232581.2	chr16	+	2950	19	FSM	ENSMUSG00000022779.17	ENSMUST00000232581.2	2950	19	0	0	0	0	multi-exon	TRUE	canonical	3	71	junction_1	102.489023802552	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAGCCTGGGACCTTT	NA	False	NA	NA	False	ATTAAA	-27	NA	16688620	16710849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_16688694_16692935_16693020_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
ENSMUST00000232594.2	chr16	-	454	2	FSM	ENSMUSG00000038965.18	ENSMUST00000232594.2	454	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGCTTGCTTTGTTTTA	NA	False	NA	-19	True	ATTAAA	-17	NA	16994371	16971788	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_16972147_16994275
ENSMUST00000232635.2	chr16	-	1184	4	FSM	ENSMUSG00000022856.10	ENSMUST00000232635.2	1184	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	70.6304938866115	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTGCAGGTTCTGAATG	9211	False	NA	-3	True	ATTAAA	-15	NA	21766281	21753076	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_21753796_21755730_21755870_21756682_21756845_21766117
ENSMUST00000232681.2	chr16	-	1371	4	FSM	ENSMUSG00000004462.8	ENSMUST00000232681.2	1371	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	30.539591789457	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAATGCCTTTGTTAGGA	NA	False	NA	NA	False	NA	NA	NA	22676292	22644244	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_22644883_22652627_22652784_22660478_22660858_22676094
ENSMUST00000232687.2	chr17	-	694	4	FSM	ENSMUSG00000024067.15	ENSMUST00000232687.2	694	4	0	0	0	0	multi-exon	FALSE	canonical	3	2414	junction_1	149.934059580278	11428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTATAGTTGTTGTATA	NA	False	NA	-18	True	AATAAA	-16	NA	74623198	74606476	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038
ENSMUST00000232702.2	chr17	-	581	3	FSM	ENSMUSG00000055839.7	ENSMUST00000232702.2	581	3	0	0	0	0	multi-exon	FALSE	canonical	3	11428	junction_1	404.5	44783	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTACTGCATTTCTCATT	NA	False	NA	-10	True	AGTAAA	-11	NA	24048057	24043718	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24043954_24046441_24046548_24047817
ENSMUST00000232719.2	chr17	+	1431	2	FSM	ENSMUSG00000023906.4	ENSMUST00000232719.2	1431	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGTGTCTGATGTCTCT	NA	False	NA	5	True	AATAAA	-19	NA	23898345	23901416	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_23898382_23900021
ENSMUST00000232723.2	chr17	-	627	4	FSM	ENSMUSG00000024006.18	ENSMUST00000232723.2	627	4	0	0	0	0	multi-exon	FALSE	canonical	3	701	junction_1	11.2644968324772	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACATGTTCACTTCTCTT	NA	False	NA	NA	False	AATATA	-15	NA	29226886	29210154	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_29210395_29211390_29211443_29218982_29219116_29226684
ENSMUST00000232751.2	chr17	-	1002	8	FSM	ENSMUSG00000004865.17	ENSMUST00000232751.2	1002	8	0	0	0	0	multi-exon	FALSE	canonical	3	656	junction_7	99.9697913555564	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTAGAGTGTTTTTATTT	NA	False	NA	NA	False	AGTAAA	-20	NA	28841425	28821449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
ENSMUST00000232766.2	chr17	-	883	4	FSM	ENSMUSG00000024048.16	ENSMUST00000232766.2	883	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1388.00920586124	8930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTAGCGTTATTTGCCA	6427	False	NA	-12	True	ATTAAA	-21	NA	71305049	71301281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71305025
ENSMUST00000232770.2	chr17	+	1202	4	FSM	ENSMUSG00000037805.16	ENSMUST00000232770.2	1202	4	0	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_2	1519.39724891155	22586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547589	28550006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_28547860_28547940_28548497_28549498_28549672_28549803
ENSMUST00000232867.2	chr17	+	511	6	FSM	ENSMUSG00000037805.16	ENSMUST00000232867.2	511	6	0	0	0	0	multi-exon	FALSE	canonical	2	872	junction_4	2999.11700338616	565	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGGTGTCCTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	28547570	28549883	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548497_28549567_28549672_28549803
ENSMUST00000232870.2	chr16	-	1311	9	FSM	ENSMUSG00000022948.17	ENSMUST00000232870.2	1311	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	42.804789451649	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	-4	True	AATAAA	-18	NA	93396169	93380347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390221_93393185_93393224_93396099
ENSMUST00000232873.2	chr17	+	984	7	FSM	ENSMUSG00000024217.11	ENSMUST00000232873.2	984	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	752.710306529382	24917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGTCCCTGTCCCTTGCA	NA	False	NA	21	True	AATAAA	-23	NA	28057123	28070942	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_28057234_28058947_28059144_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
ENSMUST00000232907.2	chr11	+	422	3	FSM	ENSMUSG00000086859.5	ENSMUST00000232907.2	422	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	299	416	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTTCCATTGTTCAAT	707	False	NA	20	True	AATAAA	-16	NA	116967440	116969781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116967588_116967933_116968029_116969601
ENSMUST00000233014.2	chr17	+	553	5	FSM	ENSMUSG00000037805.16	ENSMUST00000233014.2	553	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3545.96294220625	929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCTGCCACTCAGCCTT	NA	False	NA	-15	True	AATAAA	-4	NA	28547556	28549991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548022_28549498_28549672_28549803
ENSMUST00000233068.2	chr17	+	2706	9	FSM	ENSMUSG00000024082.6	ENSMUST00000233068.2	2706	9	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_6	37.0202647208255	1827	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAGTTGTCTGTAGAAC	NA	False	NA	NA	False	GATAAA	-19	NA	79244565	79255481	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724
ENSMUST00000233089.2	chr17	-	947	4	FSM	ENSMUSG00000024048.16	ENSMUST00000233089.2	947	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1388.00920586124	8868	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTAGCGTTATTTGCCA	7174	False	NA	-12	True	ATTAAA	-21	NA	71304302	71301281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71304214
ENSMUST00000233105.2	chr17	+	594	3	FSM	ENSMUSG00000071172.14	ENSMUST00000233105.2	594	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	30.5	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTACTAATGATATAAAGCAA	NA	False	NA	17	True	AATAAA	-31	NA	29258667	29260705	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29258884_29259748_29259788_29260366
ENSMUST00000233129.2	chr17	-	981	9	FSM	ENSMUSG00000004865.17	ENSMUST00000233129.2	981	9	0	0	0	0	multi-exon	FALSE	canonical	3	656	junction_8	93.865595401084	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGCTGCTGAGGCTTC	NA	False	NA	NA	False	AATAAA	-21	NA	28841425	28819677	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
ENSMUST00000233136.2	chr17	-	1289	7	FSM	ENSMUSG00000023971.10	ENSMUST00000233136.2	1289	7	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_2	28.055995596109	2504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	46985278	46978386	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
ENSMUST00000233155.2	chr17	-	2274	7	FSM	ENSMUSG00000023971.10	ENSMUST00000233155.2	2274	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	160.801551263938	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCTTGCATCAGCCTGC	NA	False	NA	-3	True	NA	NA	NA	46985213	46977249	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46978160_46978360_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983774_46985122
ENSMUST00000233174.2	chr17	-	1263	8	FSM	ENSMUSG00000023980.8	ENSMUST00000233174.2	1263	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	61.3926805449135	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTTATTTATTATTATA	NA	False	NA	NA	False	AATAAA	-19	NA	47813212	47794288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_47794760_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
ENSMUST00000233187.2	chr17	-	512	4	FSM	ENSMUSG00000024067.15	ENSMUST00000233187.2	512	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	1032.98047738893	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTATAGTTGTTGTA	NA	False	NA	-20	True	AATAAA	-14	NA	74623389	74606478	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_74606820_74622896_74622945_74623038_74623112_74623339
ENSMUST00000233192.2	chr17	-	1310	6	FSM	ENSMUSG00000063888.8	ENSMUST00000233192.2	1310	6	0	0	0	0	multi-exon	FALSE	canonical	3	2131	junction_4	73.7276067697847	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCCTAAATCTCTTTATC	NA	False	NA	NA	False	NA	NA	NA	47093582	47088443	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
ENSMUST00000233233.2	chr17	+	918	3	FSM	ENSMUSG00000002379.8	ENSMUST00000233233.2	918	3	0	0	0	0	multi-exon	FALSE	canonical	3	2627	junction_1	33.5	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCAGCCATGGGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	57024797	57028998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57024943_57028034_57028128_57028318
ENSMUST00000233248.2	chr17	-	2820	11	FSM	ENSMUSG00000010592.10	ENSMUST00000233248.2	2820	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	161.906269180659	546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTGACTTACTGTCCTG	NA	False	NA	-3	True	AATAAA	-18	NA	50599920	50586422	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_50588340_50590155_50590255_50591265_50591380_50592023_50592075_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50599848
ENSMUST00000233306.2	chr17	-	1496	1	FSM	ENSMUSG00000024218.14	ENSMUST00000233306.2	1496	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	28126709	28125213	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_28125200_28126700
ENSMUST00000233319.2	chr17	+	2567	17	FSM	ENSMUSG00000002372.10	ENSMUST00000233319.2	2567	17	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	111.513574706176	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	ATTAAA	-14	NA	56980364	57018764	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_56980412_56993005_56993062_56999520_56999722_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
ENSMUST00000233324.2	chr16	-	934	7	FSM	ENSMUSG00000022948.17	ENSMUST00000233324.2	934	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	57.2996509587973	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	-4	True	AATAAA	-18	NA	93387977	93380347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387143_93387175_93387761
ENSMUST00000233417.2	chr17	-	636	4	FSM	ENSMUSG00000117098.2	ENSMUST00000233417.2	636	4	0	0	0	0	multi-exon	FALSE	canonical	3	1383	junction_1	721.629175315596	339	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGCGGCGGCTGACACG	2273	False	NA	NA	False	NA	NA	NA	71309203	71281317	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_71281492_71303104_71303267_71303691_71303891_71309102
ENSMUST00000233426.2	chr17	+	590	3	FSM	ENSMUSG00000040771.15	ENSMUST00000233426.2	590	3	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_1	344	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCAGTCTCTTCGCCCT	NA	False	NA	NA	False	ACTAAA	-18	NA	48717119	48718658	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_48717266_48717855_48717933_48718291
ENSMUST00000233427.2	chr17	+	729	6	FSM	ENSMUSG00000037805.16	ENSMUST00000233427.2	729	6	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	3247.70076207769	161936	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547541	28550006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_28547593_28547787_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
ENSMUST00000233430.2	chr17	+	945	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233430.2	945	4	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_1	155.5913450892	7090	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCACACCGCCTGTGCT	NA	False	NA	-4	True	AATAAA	-21	NA	46991911	46994028	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_46992089_46992542_46992824_46992934_46993038_46993644
ENSMUST00000233457.2	chr17	+	376	4	FSM	ENSMUSG00000002379.8	ENSMUST00000233457.2	376	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	1255.16807196841	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCAATGTCTTAAAGGCA	NA	False	NA	16	True	AATAAA	-16	NA	57024786	57029135	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57024838_57028076_57028128_57028318_57028442_57028984
ENSMUST00000233474.2	chr17	-	2004	19	FSM	ENSMUSG00000073460.6	ENSMUST00000233474.2	2004	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	33.1558701951112	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTACATGGCCAGTGC	2974	False	NA	-8	True	GATAAA	-20	NA	13128833	13107615	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113499_13114398_13114485_13116147_13116218_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125425_13127939_13128014_13128348_13128407_13128722
ENSMUST00000233483.2	chr17	-	442	3	FSM	ENSMUSG00000055839.7	ENSMUST00000233483.2	442	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	5701	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGACTTTTCTGTTCCCTCT	NA	False	NA	-31	True	AATAAA	-23	NA	24047777	24043777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24043954_24046441_24046548_24047617
ENSMUST00000233519.2	chr17	-	414	4	FSM	ENSMUSG00000055839.7	ENSMUST00000233519.2	414	4	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_3	5439.43761390418	8493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATTGACTTTTCTGTTC	NA	False	NA	-36	True	AATAAA	-18	NA	24048088	24043782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24043954_24046441_24046548_24047817_24047923_24048056
ENSMUST00000233549.2	chr17	+	2749	10	FSM	ENSMUSG00000007603.10	ENSMUST00000233549.2	2749	10	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_2	26.7830792354676	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTGGCTCTCCTTGTGA	9250	False	NA	12	True	NA	NA	NA	57071783	57077093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
ENSMUST00000233553.2	chr17	-	997	8	FSM	ENSMUSG00000023935.11	ENSMUST00000233553.2	997	8	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_7	5.17450579322138	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTTTTGTAATATGGT	NA	False	NA	NA	False	NA	NA	NA	45785752	45756805	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45757010_45760360_45760477_45763603_45763667_45765016_45765138_45768083_45768246_45772087_45772237_45775352_45775507_45785724
ENSMUST00000233566.2	chr16	+	2415	4	FSM	ENSMUSG00000023147.18	ENSMUST00000233566.2	2415	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	163.242832069963	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGGTACTGTGGAAAGCG	NA	False	NA	24	True	AATAAA	-18	NA	95946612	95959046	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_95946779_95953012_95953179_95955280_95955396_95957078
ENSMUST00000233581.2	chr17	-	734	5	FSM	ENSMUSG00000024067.15	ENSMUST00000233581.2	734	5	0	0	0	0	multi-exon	FALSE	canonical	3	1923	junction_4	306.562391692132	16157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGTTGTATATGACAAGT	NA	False	NA	-10	True	AATAAA	-24	NA	74623458	74606468	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038_74623112_74623339
ENSMUST00000233593.2	chr17	-	578	5	FSM	ENSMUSG00000055839.7	ENSMUST00000233593.2	578	5	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	5034.57517448096	32474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCATTTCTCATTTTTAT	NA	False	NA	-5	True	AGTAAA	-16	NA	24048072	24043713	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24043954_24045559_24045641_24046441_24046548_24047817_24047953_24048056
ENSMUST00000233636.2	chr17	+	678	5	FSM	ENSMUSG00000039218.18	ENSMUST00000233636.2	678	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	99.1387916004628	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAAGATAGAGGACGGT	NA	False	NA	45	True	NA	NA	NA	24022207	24029002	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24022282_24025905_24026177_24027039_24027148_24027327_24027493_24028942
ENSMUST00000233657.2	chr17	+	882	6	FSM	ENSMUSG00000024217.11	ENSMUST00000233657.2	882	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	825.321658506549	15831	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGCGTGTCCCTGTCCC	NA	False	NA	16	True	AATAAA	-18	NA	28059128	28070937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_28059338_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
ENSMUST00000233661.2	chr17	+	1601	7	FSM	ENSMUSG00000003208.10	ENSMUST00000233661.2	1601	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	54.397967690796	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATGTTCGTGTTGGAGTC	269	False	NA	4	True	NA	NA	NA	56266098	56275281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_56266262_56267712_56267814_56269018_56269164_56271129_56271265_56271485_56271668_56272168_56272290_56274527
ENSMUST00000233685.2	chr11	+	389	3	FSM	ENSMUSG00000086859.5	ENSMUST00000233685.2	389	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	307	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTTCCATTGTTCAAT	556	False	NA	20	True	AATAAA	-16	NA	116967289	116969781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116967404_116967933_116968029_116969601
ENSMUST00000233723.2	chr17	-	820	1	FSM	ENSMUSG00000024006.18	ENSMUST00000233723.2	820	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	149	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAACAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	29226841	29226021	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_29226000_29226800
ENSMUST00000233752.2	chr17	+	1013	6	FSM	ENSMUSG00000024217.11	ENSMUST00000233752.2	1013	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	791.835184871195	1528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGTCCCTGTCCCTTGCA	NA	False	NA	21	True	AATAAA	-23	NA	28059108	28070942	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_28059144_28059437_28059781_28061243_28061353_28064156_28064247_28066926_28067032_28070611
ENSMUST00000233769.2	chr17	-	975	7	FSM	ENSMUSG00000023935.11	ENSMUST00000233769.2	975	7	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_6	6.15539510420646	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTGTAATATGGTATT	NA	False	NA	NA	False	NA	NA	NA	45785790	45756802	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_45757010_45760360_45760477_45765016_45765138_45768083_45768246_45772087_45772237_45775352_45775507_45785724
ENSMUST00000233792.2	chr17	-	1931	8	FSM	ENSMUSG00000023832.15	ENSMUST00000233792.2	1931	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	366.747758503507	638	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCTTGTCAGTGAGTT	NA	False	NA	0	True	NA	NA	NA	13179607	13161924	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13171138_13171257_13175105_13175288_13178881_13179017_13179495
ENSMUST00000233796.2	chr17	-	512	3	FSM	ENSMUSG00000055839.7	ENSMUST00000233796.2	512	3	0	0	0	0	multi-exon	FALSE	canonical	1	11	junction_2	5708.5	650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGACTTTTCTGTTCCCTCT	NA	False	NA	-31	True	AATAAA	-23	NA	24047785	24043777	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24043954_24046441_24046548_24047555
ENSMUST00000233798.2	chr17	-	906	4	FSM	ENSMUSG00000024048.16	ENSMUST00000233798.2	906	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1388.00920586124	8898	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTAGCGTTATTTGCCA	5918	False	NA	-12	True	ATTAAA	-21	NA	71305558	71301281	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71305511
ENSMUST00000233832.2	chr17	+	493	4	FSM	ENSMUSG00000002379.8	ENSMUST00000233832.2	493	4	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_2	1185.6477835625	2557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTTAAAGGCAGGCTTG	NA	False	NA	22	True	AATAAA	-22	NA	57024782	57029141	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57024943_57028034_57028128_57028358_57028442_57028984
ENSMUST00000233845.2	chr17	+	434	1	FSM	ENSMUSG00000002660.9	ENSMUST00000233845.2	434	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	359	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57297391	57297825	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_57297400_57297800
ENSMUST00000233857.2	chr17	-	366	3	FSM	ENSMUSG00000055839.7	ENSMUST00000233857.2	366	3	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_2	5504	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGACTTTTCTGTTCCCTC	NA	False	NA	-32	True	AATAAA	-22	NA	24047805	24043778	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24043954_24046441_24046548_24047720
ENSMUST00000233895.2	chr17	+	546	5	FSM	ENSMUSG00000037805.16	ENSMUST00000233895.2	546	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	3518.24309847969	1608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCCTTGGTGTGCCTGT	NA	False	NA	-4	True	AATAAA	-15	NA	28547550	28550002	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548497_28549803
ENSMUST00000233916.2	chr17	+	1473	6	FSM	ENSMUSG00000024084.9	ENSMUST00000233916.2	1473	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	82.0351144327842	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGAATTTATTTTCATGT	NA	False	NA	11	True	ATTAAA	-20	NA	79359616	79397650	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_79359818_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
ENSMUST00000233937.2	chr17	+	634	5	FSM	ENSMUSG00000037805.16	ENSMUST00000233937.2	634	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3056.76147049455	9201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCTGCCACTCAGCCTT	NA	False	NA	-15	True	AATAAA	-4	NA	28547543	28549991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_28547593_28547784_28547860_28548347_28548497_28549498_28549672_28549803
ENSMUST00000233974.2	chr17	-	2313	16	FSM	ENSMUSG00000003546.11	ENSMUST00000233974.2	2313	16	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_15	23.4960043884534	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCGGAGTCTTCATTG	NA	False	NA	-2	True	AATAAA	-18	NA	46956948	46941549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956900
ENSMUST00000233981.2	chr16	-	744	3	FSM	ENSMUSG00000022948.17	ENSMUST00000233981.2	744	3	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	7.5	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	-4	True	AATAAA	-18	NA	93383519	93380347	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_-_93380573_93382066_93382191_93383124
ENSMUST00000233988.2	chr17	-	3038	15	FSM	ENSMUSG00000059409.10	ENSMUST00000233988.2	3038	15	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_14	104.207504919908	2222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGAGTCGCCTTGGTGT	1000	False	NA	NA	False	AATAAA	-15	NA	47016037	46993916	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_46995053_46995186_46995304_46995431_46995505_46995590_46995693_46996227_46996356_46996444_46996616_46996979_46997034_46997188_46997358_46997484_46997616_46997959_46998053_46998175_46998287_46998371_46998572_46998762_46998956_47010994_47011076_47015758
ENSMUST00000234017.2	chr17	-	1443	1	FSM	ENSMUSG00000067288.14	ENSMUST00000234017.2	1443	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	528	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	False	NA	-27	True	AATAAA	-12	NA	34043468	34042025	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34042000_34043500
ENSMUST00000234028.2	chr17	+	1270	9	FSM	ENSMUSG00000052712.18	ENSMUST00000234028.2	1270	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	118.386813032533	975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATGGGTTGGTTGCTTA	484	False	NA	14	True	AATAAA	-15	NA	29487934	29520498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515536_29515664_29517615_29517740_29520329
ENSMUST00000234036.2	chr17	-	1625	6	FSM	ENSMUSG00000024127.16	ENSMUST00000234036.2	1625	6	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_4	17.1043854025802	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTTAAAAAAAAAATGTG	NA	False	NA	NA	False	AATAAA	-38	NA	85397659	85385486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85396304_85397533
ENSMUST00000234046.2	chr5	-	947	2	FSM	ENSMUSG00000072694.9	ENSMUST00000234046.2	947	2	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	0	3694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTCTTGTGGGTGAT	9593	False	NA	2	True	NA	NA	NA	114961529	114959995	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_-_114960787_114961373
ENSMUST00000234058.2	chr17	+	1052	3	FSM	ENSMUSG00000117373.2	ENSMUST00000234058.2	1052	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCACACTGTATAGAGACT	NA	False	NA	NA	False	NA	NA	NA	33076579	33084453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_33076706_33081125_33081187_33083588
ENSMUST00000234098.2	chr17	-	1440	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234098.2	1440	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	254.994553318737	2324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAAGGTGTCTGTCTTGT	NA	False	NA	-6	True	AGTAAA	-24	NA	25105321	25101585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25102289_25102779_25102864_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105252
ENSMUST00000234107.2	chr18	+	2422	8	FSM	ENSMUSG00000024317.16	ENSMUST00000234107.2	2422	8	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	133.739008703443	1646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTGTAAAAAACCTTTT	NA	False	NA	10	True	AATAAA	-21	NA	21134397	21160592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
ENSMUST00000234118.2	chr18	-	2494	14	FSM	ENSMUSG00000044252.19	ENSMUST00000234118.2	2494	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	102.439937663015	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12987516	12888384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12987471
ENSMUST00000234186.2	chr18	+	2110	9	FSM	ENSMUSG00000024234.8	ENSMUST00000234186.2	2110	9	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	58.8005102018681	348	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTAGTATCTATTTTCT	-12	True	NA	18	True	AATAAA	-20	NA	4375591	4396785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383184_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ENSMUST00000234194.2	chr18	-	2489	14	FSM	ENSMUSG00000044252.19	ENSMUST00000234194.2	2489	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	102.439937663015	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12988321	12888384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12988281
ENSMUST00000234207.2	chr18	+	439	4	FSM	ENSMUSG00000002477.6	ENSMUST00000234207.2	439	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	847.378047600689	2688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAAGTGTAGGGACAGA	-11	True	NA	2	True	NA	NA	NA	10617795	10627955	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_10617927_10623630_10623708_10626948_10627018_10627793
ENSMUST00000234235.2	chr17	-	682	3	FSM	ENSMUSG00000040888.11	ENSMUST00000234235.2	682	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	299	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTGATTTCTGGATGTA	NA	False	NA	6	True	ATTAAA	-27	NA	24915064	24913158	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24913417_24914227_24914392_24914804
ENSMUST00000234261.2	chr17	-	1221	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234261.2	1221	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	327.65310924818	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAAGGTGTCTGTCTTGT	NA	False	NA	-6	True	AGTAAA	-24	NA	25105289	25101585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104692_25104838_25105252
ENSMUST00000234262.2	chr17	-	2774	13	FSM	ENSMUSG00000024187.16	ENSMUST00000234262.2	2774	13	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_11	57.1286924408392	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGGATGTCTTTCTG	1974	False	NA	2	True	NA	NA	NA	26463142	26431664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444901_26444998_26462979
ENSMUST00000234293.2	chr17	-	1191	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234293.2	1191	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_5	321.432419024591	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTGGTCAAGGTGTCTG	NA	False	NA	-12	True	AGTAAA	-18	NA	25105303	25101591	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104692_25104812_25105264
ENSMUST00000234295.2	chr17	+	3079	4	FSM	ENSMUSG00000095193.3	ENSMUST00000234295.2	3079	4	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	17.6635217326557	615	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTCGTCATGGTATC	NA	False	NA	NA	False	NA	NA	NA	95172345	95185749	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_95172441_95181413_95181541_95181729_95181791_95182953
ENSMUST00000234304.2	chr17	+	1137	7	FSM	ENSMUSG00000024132.7	ENSMUST00000234304.2	1137	7	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_1	41.5508390074403	4738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTTAGCTCTTGTGTTC	4840	False	NA	11	True	TATAAA	-24	NA	24645614	24658294	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24645717_24645826_24645914_24652106_24652235_24655151_24655299_24656193_24656316_24656405_24656585_24657922
ENSMUST00000234308.2	chr17	+	2084	6	FSM	ENSMUSG00000041429.4	ENSMUST00000234308.2	2084	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	84.8042451767599	961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTCTTGGCCCGTTGGCT	906	False	NA	10	True	AATAAA	-22	NA	24851653	24857810	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24852833_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
ENSMUST00000234316.2	chr18	+	1406	6	FSM	ENSMUSG00000033107.7	ENSMUST00000234316.2	1406	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	19.3349424617711	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCTGCGTTTGAAGTGT	1219	False	NA	NA	False	AATATA	-11	NA	21094528	21116781	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_21094858_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
ENSMUST00000234342.2	chr17	+	2106	1	FSM	ENSMUSG00000034681.18	ENSMUST00000234342.2	2106	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	160	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GCAAAAAAAAAAAAAAAAAT	803	False	NA	NA	False	NA	NA	NA	24633538	24635644	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24633500_24635600
ENSMUST00000234344.2	chr18	+	2416	6	FSM	ENSMUSG00000024400.17	ENSMUST00000234344.2	2416	6	0	0	0	0	multi-exon	FALSE	canonical	3	387	junction_4	31.1088411870323	1819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCACTGTTAGAATCT	5733	False	NA	7	True	AATAAA	-18	NA	31937228	31968475	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635
ENSMUST00000234352.2	chr17	-	1224	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234352.2	1224	6	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_4	254.082191426318	504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGTCAAGGTGTCTGT	NA	False	NA	-11	True	AGTAAA	-19	NA	25105323	25101590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104692_25104812_25105252
ENSMUST00000234362.2	chr17	+	1780	9	FSM	ENSMUSG00000090083.12	ENSMUST00000234362.2	1780	9	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_3	87.2496418330757	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCTCAGCTGGGCTTC	NA	False	NA	16	True	AATAAA	-15	NA	29833941	29860623	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29834053_29840482_29840612_29845479_29845817_29845920_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
ENSMUST00000234380.2	chr17	-	715	6	FSM	ENSMUSG00000008668.16	ENSMUST00000234380.2	715	6	0	0	0	0	multi-exon	FALSE	canonical	1	30	junction_3	10301.0144238322	4376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34172713_34172883_34174051_34174151_34174591
ENSMUST00000234406.2	chr17	-	842	5	FSM	ENSMUSG00000036438.15	ENSMUST00000234406.2	842	5	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_4	3004.56365384393	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCGTGGACTGTGGACAGT	NA	False	NA	-135	True	NA	NA	NA	87754284	87741092	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87754220
ENSMUST00000234416.2	chr17	-	1652	13	FSM	ENSMUSG00000024012.19	ENSMUST00000234416.2	1652	13	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_11	417.184478245403	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGCAAGCCTCTTAT	NA	False	NA	-9	True	AATAAA	-21	NA	29566526	29551049	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555191_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29560038_29560176_29561796_29561882_29566440
ENSMUST00000234422.2	chr18	+	2626	9	FSM	ENSMUSG00000024234.8	ENSMUST00000234422.2	2626	9	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	58.5340445809103	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGTGATAACAGTATTTC	-8	True	NA	15	True	AATAAA	-16	NA	4375595	4397328	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_4375779_4379568_4379742_4380672_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
ENSMUST00000234489.2	chr17	-	1423	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234489.2	1423	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	262.106636483872	735	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTGGTCAAGGTGTCT	NA	False	NA	-13	True	AGTAAA	-17	NA	25105294	25101592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103561_25104392_25104592_25104692_25104812_25105252
ENSMUST00000234503.2	chr17	-	1991	9	FSM	ENSMUSG00000024097.12	ENSMUST00000234503.2	1991	9	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_6	890.532565378718	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGCATGTTTGAGGA	NA	False	NA	NA	False	NA	NA	NA	80514736	80508258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512050_80512511_80512690_80512868_80513276_80513458_80514603
ENSMUST00000234506.2	chr17	+	1417	4	FSM	ENSMUSG00000002308.17	ENSMUST00000234506.2	1417	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_3	11.8977121983832	2451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGCCTCTAGCCTGTTT	7055	False	NA	23	True	ATTAAA	-16	NA	34062126	34067727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34062266_34064989_34065116_34066468_34067153_34067259
ENSMUST00000234520.2	chr17	-	1177	4	FSM	ENSMUSG00000040888.11	ENSMUST00000234520.2	1177	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	273.584843634779	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCTGGTTTCTGTGTGCT	NA	False	NA	-10	True	AATAAA	-14	NA	24915086	24912163	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_24912587_24913141_24913417_24914227_24914425_24914804
ENSMUST00000234524.2	chr18	-	2603	9	FSM	ENSMUSG00000037013.18	ENSMUST00000234524.2	2603	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	300.413048984228	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAATAAATTATTTGTGA	NA	False	NA	-45	True	TTTAAA	-19	NA	14815823	14758711	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14788083_14788238_14803365_14803451_14812443_14812521_14815723
ENSMUST00000234536.2	chr18	+	2271	7	FSM	ENSMUSG00000024317.16	ENSMUST00000234536.2	2271	7	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_6	95.8227530391399	1624	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTGTAAAAAACCTTTT	NA	False	NA	10	True	AATAAA	-21	NA	21134964	21160592	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
ENSMUST00000234554.2	chr17	-	2828	13	FSM	ENSMUSG00000024187.16	ENSMUST00000234554.2	2828	13	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_11	57.1286924408392	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGGATGTCTTTCTG	1920	False	NA	2	True	NA	NA	NA	26463196	26431664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444901_26444998_26462979
ENSMUST00000234559.2	chr18	+	1023	4	FSM	ENSMUSG00000024273.9	ENSMUST00000234559.2	1023	4	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	19.3620476419435	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGACCAACGGAGCAGAAGG	341	False	NA	-94	True	NA	NA	NA	24603907	24610714	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_24604142_24606006_24606207_24608581_24608782_24610325
ENSMUST00000234579.2	chr17	-	1445	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234579.2	1445	7	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_6	253.310580118557	2474	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAAGGTGTCTGTCTTGTT	NA	False	NA	-5	True	AGTAAA	-25	NA	25105313	25101584	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104838_25105252
ENSMUST00000234597.2	chr17	-	1434	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234597.2	1434	6	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_4	61.1391854705311	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAAGGTGTCTGTCTTGT	NA	False	NA	-6	True	AGTAAA	-24	NA	25104888	25101585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692
ENSMUST00000234622.2	chr18	+	2303	3	FSM	ENSMUSG00000024287.9	ENSMUST00000234622.2	2303	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	387.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATTAAAAAAAAAAAACAG	49	False	NA	NA	False	NA	NA	NA	9958238	9961300	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_9958422_9959097_9959172_9959254
ENSMUST00000234633.2	chr18	+	515	1	FSM	ENSMUSG00000117621.2	ENSMUST00000234633.2	515	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	81230	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAATAAAATGATGTAAATG	NA	False	NA	NA	False	NA	NA	NA	47245205	47245720	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_47245200_47245700
ENSMUST00000234635.2	chr17	+	893	6	FSM	ENSMUSG00000041429.4	ENSMUST00000234635.2	893	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	84.8042451767599	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGGTGGTAAACTTTGGG	945	False	NA	-47	True	NA	NA	NA	24851692	24857753	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24851738_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
ENSMUST00000234674.2	chr17	-	1393	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234674.2	1393	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_4	280.389015476712	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAAGGTGTCTGTCTTGT	NA	False	NA	-6	True	AGTAAA	-24	NA	25104888	25101585	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103489_25104392_25104592_25104692
ENSMUST00000234687.2	chr17	-	2833	13	FSM	ENSMUSG00000024187.16	ENSMUST00000234687.2	2833	13	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_12	40.5798253103956	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCAGCGTGAGCCTGCAGT	1928	False	NA	-17	True	AATAAA	-31	NA	26463188	26431683	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444885_26444998_26462963
ENSMUST00000234696.2	chr17	-	987	7	FSM	ENSMUSG00000024097.12	ENSMUST00000234696.2	987	7	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	923.958693160396	1146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514732	80508738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_80509032_80510119_80510174_80511583_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUST00000234773.2	chr17	+	1367	9	FSM	ENSMUSG00000052712.18	ENSMUST00000234773.2	1367	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	116.357208629289	506	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGTTGGTTGCTTAGTT	1246	False	NA	17	True	AATAAA	-18	NA	29488696	29520501	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29488830_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ENSMUST00000234871.2	chr18	-	2818	14	FSM	ENSMUSG00000044252.19	ENSMUST00000234871.2	2818	14	0	0	0	0	multi-exon	TRUE	canonical	3	45	junction_13	91.3749671156418	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12996497	12888384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996128
ENSMUST00000234889.2	chr17	-	1898	7	FSM	ENSMUSG00000024097.12	ENSMUST00000234889.2	1898	7	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_3	729.529623951092	1208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514733	80508738	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80512868_80513276_80513458_80514603
ENSMUST00000234893.2	chr17	-	591	2	FSM	ENSMUSG00000059208.16	ENSMUST00000234893.2	591	2	0	0	0	0	multi-exon	FALSE	canonical	3	2194	junction_1	0	1948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	NA	False	NA	-5	True	AATAAA	-16	NA	33867953	33865209	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_33865634_33867786
ENSMUST00000234961.2	chr18	+	792	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234961.2	792	6	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_5	518.443593846042	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAACTTTATAAATATTT	NA	False	NA	-11	True	TTTAAA	-1	NA	47091927	47168874	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47168619
ENSMUST00000234968.2	chr17	-	1502	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234968.2	1502	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	246.820953999723	935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGTCAAGGTGTCTGT	NA	False	NA	-11	True	AGTAAA	-19	NA	25105307	25101590	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25102384_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105252
ENSMUST00000234977.2	chr17	+	1769	8	FSM	ENSMUSG00000034681.18	ENSMUST00000234977.2	1769	8	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	570.995335768505	2460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGTTTTACTGTCTG	889	False	NA	NA	False	AATAAA	-24	NA	24633624	24644875	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_24633709_24634014_24634137_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
ENSMUST00000235009.2	chr17	-	327	3	FSM	ENSMUSG00000117358.2	ENSMUST00000235009.2	327	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	48.5	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCATTGGTCTCAGTGTT	NA	False	NA	-5	True	AATAAA	-14	NA	74834639	74826659	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_74826911_74830509_74830574_74834627
ENSMUST00000235022.2	chr17	+	1164	3	FSM	ENSMUSG00000091475.5	ENSMUST00000235022.2	1164	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGCATTTATTCCCTT	3181	False	NA	13	True	AATAAA	-16	NA	25789780	25794008	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25790076_25792959_25793507_25793686
ENSMUST00000235023.2	chr17	+	1285	9	FSM	ENSMUSG00000052712.18	ENSMUST00000235023.2	1285	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	116.357208629289	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATGGGTTGGTTGCTTA	192	False	NA	14	True	AATAAA	-15	NA	29492364	29520498	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29492419_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ENSMUST00000235025.2	chr18	+	922	4	FSM	ENSMUSG00000024234.8	ENSMUST00000235025.2	922	4	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	82.9471049658891	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGCTAGTGATTATTTC	-1	True	NA	NA	False	ATTAAA	-11	NA	4375602	4383523	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383184
ENSMUST00000235027.2	chr18	-	2531	14	FSM	ENSMUSG00000044252.19	ENSMUST00000235027.2	2531	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	102.439937663015	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12994262	12888384	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12994180
ENSMUST00000235029.2	chr18	+	1146	5	FSM	ENSMUSG00000024273.9	ENSMUST00000235029.2	1146	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	81.3910314469598	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAATGGTAGTATTTAATT	340	False	NA	17	True	GATAAA	-14	NA	24603906	24610855	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_24604038_24604118_24604204_24606006_24606207_24608581_24608782_24610325
ENSMUST00000235036.2	chr17	-	1921	7	FSM	ENSMUSG00000024097.12	ENSMUST00000235036.2	1921	7	0	0	0	0	multi-exon	FALSE	canonical	3	1059	junction_3	429.146601472685	1285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTTGATTTTTGTGTT	NA	False	NA	-9	True	AATAAA	-14	NA	80514734	80508740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80512868_80513276_80513458_80514603
ENSMUST00000235050.2	chr17	+	773	6	FSM	ENSMUSG00000052712.18	ENSMUST00000235050.2	773	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	140.841187157735	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGGTTGCTTAGTTAC	476	False	NA	19	True	AATAAA	-20	NA	29487926	29520503	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29487977_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ENSMUST00000235069.2	chr17	-	1040	8	FSM	ENSMUSG00000024097.12	ENSMUST00000235069.2	1040	8	0	0	0	0	multi-exon	FALSE	canonical	3	1059	junction_3	412.241508371597	11671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAGATGTTTTGATTTTT	NA	False	NA	-14	True	AATAAA	-9	NA	80514732	80508745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
ENSMUST00000235072.2	chr17	+	440	3	FSM	ENSMUSG00000117431.2	ENSMUST00000235072.2	440	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAATGGCACTCGTGGTT	2478	False	NA	NA	False	NA	NA	NA	84316322	84320817	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_84316398_84319125_84319229_84320555
ENSMUST00000235114.2	chr17	+	1073	8	FSM	ENSMUSG00000052712.18	ENSMUST00000235114.2	1073	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	114.986245850075	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCATGGGTTGGTTGCT	468	False	NA	12	True	AATAAA	-13	NA	29487918	29520496	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
ENSMUST00000235144.2	chr17	-	1026	8	FSM	ENSMUSG00000024033.11	ENSMUST00000235144.2	1026	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_7	21.3101489666213	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAATGAGCCTCTGATGT	NA	False	NA	-7	True	AATAAA	-20	NA	31496312	31473998	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_31474194_31477071_31477201_31477761_31477922_31480728_31480801_31484787_31484924_31485316_31485408_31492290_31492397_31496175
ENSMUST00000235160.2	chr19	+	3301	11	FSM	ENSMUSG00000010663.6	ENSMUST00000235160.2	3301	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	244.492126662598	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTTATTCATTTGAAAT	NA	False	NA	21	True	AATAAA	-22	NA	10160302	10174241	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_10160629_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
ENSMUST00000235165.2	chr18	+	2349	18	FSM	ENSMUSG00000024474.8	ENSMUST00000235165.2	2349	18	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_12	177.004818811107	2489	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	6	True	ATTAAA	-16	NA	36877730	36890688	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888478_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
ENSMUST00000235171.2	chr17	-	898	6	FSM	ENSMUSG00000024026.14	ENSMUST00000235171.2	898	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	1306.85751327373	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACAGCTCCCTTTAGAG	NA	False	NA	NA	False	NA	NA	NA	30831576	30812839	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_30813201_30815347_30815438_30816778_30816867_30819012_30819154_30822993_30823077_30831441
ENSMUST00000235243.2	chr19	-	997	4	FSM	ENSMUSG00000024668.9	ENSMUST00000235243.2	997	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	80.2426874480715	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCATTGAGGCAAACTTTC	NA	False	NA	0	True	NA	NA	NA	10502456	10479707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10480494_10494343_10494454_10494683_10494751_10502422
ENSMUST00000235274.2	chr19	+	3788	24	FSM	ENSMUSG00000071650.7	ENSMUST00000235274.2	3788	24	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_5	142.157557894544	1632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATGTCTGAATTATACT	1899	False	NA	-56	True	GATAAA	-42	NA	8875470	8894036	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
ENSMUST00000235277.2	chr18	+	1586	2	FSM	ENSMUSG00000117869.2	ENSMUST00000235277.2	1586	2	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	0	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATACTTATTTTCTGTGA	NA	False	NA	NA	False	NA	NA	NA	35686474	35689017	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35686523_35687479
ENSMUST00000235293.2	chr19	-	1598	7	FSM	ENSMUSG00000057858.9	ENSMUST00000235293.2	1598	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	113.09533834582	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCAGTTGATTTATTTT	9793	False	NA	NA	False	NA	NA	NA	60215109	60187346	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60214663
ENSMUST00000235297.2	chr19	-	1721	11	FSM	ENSMUSG00000041360.9	ENSMUST00000235297.2	1721	11	0	0	0	0	multi-exon	FALSE	canonical	3	1425	junction_3	83.6366546437625	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAATGTGGTTTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	27404509	27392740	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436
ENSMUST00000235305.2	chr19	+	855	7	FSM	ENSMUSG00000025090.10	ENSMUST00000235305.2	855	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	14.1273965518539	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTAAGTTGGTCTGTCC	NA	False	NA	NA	False	ACTAAA	-5	NA	58500423	58541517	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_58500459_58500742_58500868_58501047_58501134_58514279_58514397_58515703_58515870_58539855_58539948_58541283
ENSMUST00000235307.2	chr18	+	1747	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47914	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	AATAAA	-30	NA	48179713	48181460	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_48179700_48181500
ENSMUST00000235327.2	chr17	-	1267	4	FSM	ENSMUSG00000057411.10	ENSMUST00000235327.2	1267	4	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_3	24.4449494897321	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8392	False	NA	-7	True	AATAAA	-17	NA	26011347	26009479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545
ENSMUST00000235400.2	chr18	+	1522	5	FSM	ENSMUSG00000037058.17	ENSMUST00000235400.2	1522	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	1449.29120607282	12521	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTGGTGCTTGTGTTAT	4672	False	NA	19	True	AATAAA	-13	NA	35731701	35750236	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35731813_35741790_35741873_35743923_35744088_35746375_35746556_35749251
ENSMUST00000235407.2	chr19	+	516	4	FSM	ENSMUSG00000024661.8	ENSMUST00000235407.2	516	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2611.97375348392	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGGTGAAATCCATTAAAG	4927	False	NA	NA	False	NA	NA	NA	9960067	9962179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_9960348_9961616_9961692_9961923_9962050_9962144
ENSMUST00000235429.2	chr17	-	2149	2	FSM	ENSMUSG00000117916.2	ENSMUST00000235429.2	2149	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATACTCCGACTTGGGTT	6249	False	NA	-9	True	NA	NA	NA	27461633	27454048	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27456112_27461547
ENSMUST00000235442.2	chr17	-	1130	4	FSM	ENSMUSG00000024194.17	ENSMUST00000235442.2	1130	4	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_3	309.969174094601	785	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9300	False	NA	-17	True	AATAAA	-18	NA	27158495	27156945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27157151_27157391_27157761_27157857_27158343_27158424
ENSMUST00000235455.2	chr18	+	1905	4	FSM	ENSMUSG00000057561.11	ENSMUST00000235455.2	1905	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	698.014804045492	874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTCTTTTTAATATGTT	NA	False	NA	17	True	AATAAA	-18	NA	46730821	46742245	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_46730868_46731707_46731768_46732343_46732468_46740570
ENSMUST00000235476.2	chr18	+	1569	7	FSM	ENSMUSG00000037058.17	ENSMUST00000235476.2	1569	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1378.81757918394	8768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGCTTGTGTTATTGGT	5607	False	NA	23	True	AATAAA	-17	NA	35732636	35750240	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35732672_35732765_35732812_35733097_35733171_35741790_35741873_35743923_35744088_35746375_35746556_35749251
ENSMUST00000235484.2	chr17	-	1498	5	FSM	ENSMUSG00000039615.10	ENSMUST00000235484.2	1498	5	0	0	0	0	multi-exon	FALSE	canonical	3	1486	junction_1	49.4115371143218	608	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCATGTGCTGGTGCA	6787	False	NA	-19	True	AATAAA	-15	NA	26051893	26049609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26049985_26050075_26050606_26050769_26050936_26051019_26051219_26051665
ENSMUST00000235489.2	chr19	-	1104	2	FSM	ENSMUSG00000025035.10	ENSMUST00000235489.2	1104	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCCTTGGTCATGGTAT	NA	False	NA	NA	False	NA	NA	NA	46561515	46556344	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_46557412_46561478
ENSMUST00000235520.2	chr19	-	1311	3	FSM	ENSMUSG00000007338.11	ENSMUST00000235520.2	1311	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	445.5	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACGGTGTTCAGAACCT	NA	False	NA	-15	True	ATTAAA	-15	NA	6107788	6103926	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6105013_6105105_6105231_6107688
ENSMUST00000235582.2	chr17	-	1567	5	FSM	ENSMUSG00000067203.9	ENSMUST00000235582.2	1567	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	6.10327780786685	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGGAGAACCTTCCAGAA	3644	False	NA	NA	False	AATAAA	-5	NA	34197801	34193632	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_34194054_34194470_34194588_34194714_34194990_34196844_34197498_34197700
ENSMUST00000235590.2	chr18	-	2085	6	FSM	ENSMUSG00000052102.16	ENSMUST00000235590.2	2085	6	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	488.205448556241	989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTTTGTGAATTTTG	NA	False	NA	-22	True	AATAAA	-2	NA	38472029	38460602	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_38462027_38463538_38463714_38466206_38466390_38468068_38468171_38471143_38471276_38471960
ENSMUST00000235606.2	chr18	-	868	7	FSM	ENSMUSG00000056671.8	ENSMUST00000235606.2	868	7	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_2	31.5722275988812	5149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGCTTTCTCCAAATGT	NA	False	NA	-14	True	AATAAA	-23	NA	42084307	42008664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_42008919_42014277_42014351_42045434_42045541_42065665_42065827_42068232_42068307_42070698_42070757_42084165
ENSMUST00000235619.2	chr18	-	1524	9	FSM	ENSMUSG00000024357.11	ENSMUST00000235619.2	1524	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	48.2841524208513	483	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTGTCTCTTGTGTCTG	NA	False	NA	-2	True	ATTAAA	-18	NA	35631947	35399448	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481809_35571319_35571434_35631843
ENSMUST00000235620.2	chr19	+	2441	13	FSM	ENSMUSG00000015176.12	ENSMUST00000235620.2	2441	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	313.587042674491	560	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGTTGTGATTTTCAG	4	False	NA	14	True	ATTAAA	-14	NA	46064427	46072900	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_46064589_46067141_46067198_46067311_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
ENSMUST00000235636.2	chr19	+	618	2	FSM	ENSMUSG00000118038.2	ENSMUST00000235636.2	618	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	29044746	29046903	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_29044983_29046521
ENSMUST00000235637.2	chr19	-	405	2	FSM	ENSMUSG00000118263.2	ENSMUST00000235637.2	405	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	375	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAGTTCTTTACTCTTTA	9200	False	NA	-3	True	NA	NA	NA	5357444	5355905	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5356162_5357295
ENSMUST00000235645.2	chr17	+	1531	5	FSM	ENSMUSG00000041199.4	ENSMUST00000235645.2	1531	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	24.712092181764	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATCTTGAGAGTGACCAT	NA	False	NA	14	True	AATAAA	-11	NA	25946705	25950428	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25946822_25947496_25947621_25947799_25947903_25948041_25948144_25949342
ENSMUST00000235688.2	chr19	-	613	3	FSM	ENSMUSG00000084957.4	ENSMUST00000235688.2	613	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	103	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGGGCTTGTACACTAC	NA	False	NA	NA	False	AATAAA	-17	NA	53932891	53919440	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_53919934_53920560_53920637_53932847
ENSMUST00000235701.2	chr19	-	1905	12	FSM	ENSMUSG00000024926.11	ENSMUST00000235701.2	1905	12	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	58.4797768251612	327	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTATCAGGAGTTCTTA	3629	False	NA	-6	True	AATAAA	-15	NA	5660076	5653044	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879
ENSMUST00000235756.2	chr19	-	499	3	FSM	ENSMUSG00000118346.2	ENSMUST00000235756.2	499	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	119.5	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5096	False	NA	-5	True	AATATA	-16	NA	8751809	8749889	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_8750199_8750391_8750471_8751698
ENSMUST00000235760.2	chr18	-	484	6	FSM	ENSMUSG00000024352.13	ENSMUST00000235760.2	484	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	73.963774917185	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCCCAGGTGCTGGATCA	NA	False	NA	-117	True	NA	NA	NA	35795184	35789851	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_35789898_35790001_35790105_35793335_35793407_35793549_35793628_35793844_35793911_35795064
ENSMUST00000235781.2	chr19	-	2556	17	FSM	ENSMUSG00000063904.5	ENSMUST00000235781.2	2556	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	200.051829221829	3154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGCAGTGTATGTTTCT	NA	False	NA	-7	True	AATAAA	-15	NA	4977091	4957258	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965100_4966357_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812
ENSMUST00000235799.2	chr18	+	1300	7	FSM	ENSMUSG00000024537.6	ENSMUST00000235799.2	1300	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	156.039168871864	4626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGGTTTTATCTGGAAAG	NA	False	NA	26	True	AATAAA	-32	NA	67774670	67787232	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_67775049_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786222_67786344_67786955
ENSMUST00000235806.2	chr17	-	738	5	FSM	ENSMUSG00000025732.7	ENSMUST00000235806.2	738	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	120.520485810504	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCGGGTGTTGGTGATTG	7792	False	NA	-4	True	AATAAA	-15	NA	26087708	26082671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26082940_26083224_26083327_26083567_26083696_26087387_26087518_26087598
ENSMUST00000235830.2	chr19	-	1992	6	FSM	ENSMUSG00000025024.8	ENSMUST00000235830.2	1992	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_5	113.82794033101	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTAACAAAGGGGCGG	NA	False	NA	-2	True	AATAAA	-23	NA	53377853	53367820	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_53369033_53369671_53369826_53371987_53372167_53372884_53373028_53374803_53374988_53377733
ENSMUST00000235847.2	chr19	-	977	7	FSM	ENSMUSG00000059734.8	ENSMUST00000235847.2	977	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	709.089557108268	14045	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTACCTGTTGTGTTGT	NA	False	NA	-8	True	CATAAA	-15	NA	3962734	3958869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962469
ENSMUST00000235849.2	chr18	+	726	5	FSM	ENSMUSG00000057561.11	ENSMUST00000235849.2	726	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	803.50855627056	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTAAAATCTCTCCAGAAC	NA	False	NA	NA	False	AAAAAG	-10	NA	46730776	46749523	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_46730868_46731707_46731768_46740570_46740810_46748859_46748995_46749322
ENSMUST00000235853.2	chr19	-	2025	5	FSM	ENSMUSG00000024668.9	ENSMUST00000235853.2	2025	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	101.25802437338	719	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTATTGTTTGATCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	10502520	10479004	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10498312_10498423_10502422
ENSMUST00000235900.2	chr19	+	1884	9	FSM	ENSMUSG00000024785.8	ENSMUST00000235900.2	1884	9	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_8	128.02514401476	1923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAATCTGGGATTTTATCT	NA	False	NA	113	True	NA	NA	NA	29078774	29121329	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_29079041_29093122_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120546
ENSMUST00000235921.2	chr19	+	2602	5	FSM	ENSMUSG00000048832.10	ENSMUST00000235921.2	2602	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	45.6097577279248	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGTGTCCATGATGAGT	NA	False	NA	17	True	AATAAA	-20	NA	10666128	10691991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_10666344_10683573_10683673_10687633_10687806_10688634_10688718_10689958
ENSMUST00000235960.2	chr18	+	2638	13	FSM	ENSMUSG00000037236.17	ENSMUST00000235960.2	2638	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	348.249990029513	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTTAGGTCATGTTGAT	NA	False	NA	32	True	AATAAA	-8	NA	35695263	35724472	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35695346_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
ENSMUST00000235964.2	chr19	-	833	7	FSM	ENSMUSG00000071662.5	ENSMUST00000235964.2	833	7	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_5	75.5005518743627	1616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTCATGGAAATGTTG	NA	False	NA	-12	True	CATAAA	-12	NA	8775817	8770548	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8774599_8774760_8775587
ENSMUST00000235966.2	chr18	+	755	6	FSM	ENSMUSG00000024608.12	ENSMUST00000235966.2	755	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10470.3724556484	619204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGGTTCTGGTGTTGTG	NA	False	NA	67	True	AATAAA	-17	NA	60880220	60911617	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_60880294_60907581_60907759_60909472_60909624_60910001_60910164_60910884_60910962_60911502
ENSMUST00000235977.2	chr19	-	1050	9	FSM	ENSMUSG00000036748.17	ENSMUST00000235977.2	1050	9	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_5	355.205486303351	2423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5844	False	NA	-2	True	AGTAAA	-19	NA	46327077	46318978	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320080_46320195_46320258_46320351_46320496_46321056_46321141_46327007
ENSMUST00000235986.2	chr19	+	582	3	FSM	ENSMUSG00000118100.2	ENSMUST00000235986.2	582	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	6	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGTCTGCCTGCATGCC	NA	False	NA	NA	False	NA	NA	NA	9877053	9879921	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_9877385_9878231_9878442_9879880
ENSMUST00000235990.2	chr19	-	1260	5	FSM	ENSMUSG00000024666.7	ENSMUST00000235990.2	1260	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	58.8175143983491	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTGGTGTCTTCATG	1765	False	NA	-6	True	AATAAA	-13	NA	10554471	10547843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10548633_10548892_10548969_10552200_10552300_10552603_10552876_10554447
ENSMUST00000236007.2	chr18	-	538	4	FSM	ENSMUSG00000024357.11	ENSMUST00000236007.2	538	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	61.0482504981829	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGGAAGTAATTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	35631915	35563096	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_35563361_35565516_35565605_35571319_35571434_35631843
ENSMUST00000236020.2	chr18	+	857	5	FSM	ENSMUSG00000037058.17	ENSMUST00000236020.2	857	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	1458.22751997073	5121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCAAATTAAATCACCTCC	4664	False	NA	-19	True	NA	NA	NA	35731693	35749572	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35731813_35733097_35733171_35743923_35744088_35746375_35746556_35749251
ENSMUST00000236021.2	chr19	+	370	2	FSM	ENSMUSG00000038274.14	ENSMUST00000236021.2	370	2	0	0	0	0	multi-exon	FALSE	canonical	3	11442	junction_1	0	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGGAGGTGAGTGCTTTT	1092	False	NA	NA	False	NA	NA	NA	6107983	6108594	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6108032_6108272
ENSMUST00000236040.2	chr17	+	1134	4	FSM	ENSMUSG00000024181.10	ENSMUST00000236040.2	1134	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	672.139039848817	4556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342493	26345587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26342824_26343529_26343683_26344230_26344539_26345244
ENSMUST00000236044.2	chr19	+	2442	10	FSM	ENSMUSG00000024989.16	ENSMUST00000236044.2	2442	10	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	104.602716958317	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTAGTATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	38043484	38062871	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_38043530_38045857_38045929_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
ENSMUST00000236046.2	chr19	-	1167	10	FSM	ENSMUSG00000036748.17	ENSMUST00000236046.2	1167	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	358.309542707226	2855	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5874	False	NA	-6	True	AGTAAA	-15	NA	46327047	46318982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326870_46327007
ENSMUST00000236054.2	chr18	-	792	1	FSM	ENSMUSG00000117662.2	ENSMUST00000236054.2	792	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATAGGTAACTGAGTTT	NA	False	NA	NA	False	TTTAAA	-17	NA	42408243	42407451	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_42407500_42408200
ENSMUST00000236061.2	chr19	-	1164	10	FSM	ENSMUSG00000036748.17	ENSMUST00000236061.2	1164	10	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_9	336.647010794011	4036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5858	False	NA	-6	True	AGTAAA	-15	NA	46327063	46318982	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326851_46327007
ENSMUST00000236085.2	chr18	+	1796	8	FSM	ENSMUSG00000024425.5	ENSMUST00000236085.2	1796	8	0	0	0	0	multi-exon	FALSE	canonical	3	612	junction_4	51.8734724387826	919	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTAGTGTTTCATTTGGGG	9067	False	NA	44	True	AATAAA	-29	NA	38551959	38598250	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597329
ENSMUST00000236099.2	chr19	-	1529	5	FSM	ENSMUSG00000024666.7	ENSMUST00000236099.2	1529	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	65.3543227338483	258	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGTGTCTTCATGGT	1785	False	NA	-4	True	AATAAA	-15	NA	10554451	10547841	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554233
ENSMUST00000236112.2	chr17	-	1176	3	FSM	ENSMUSG00000024177.10	ENSMUST00000236112.2	1176	3	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	7.5	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAATGGTCTACTTACTA	NA	False	NA	-6	True	ATTAAA	-16	NA	26314447	26310713	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26311127_26312590_26313245_26314338
ENSMUST00000236137.2	chr17	-	2054	17	FSM	ENSMUSG00000063011.8	ENSMUST00000236137.2	2054	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_13	16.7330838087305	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATGTCCTGTAGTGTTC	6592	False	NA	-5	True	AATAAA	-19	NA	25973351	25967589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972049_25972351_25972399_25972747_25972792_25973105_25973197_25973316
ENSMUST00000236152.2	chr19	+	2619	12	FSM	ENSMUSG00000024891.7	ENSMUST00000236152.2	2619	12	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	10.4311992290135	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGAGTGTTCACTTCT	4058	False	NA	21	True	ATTAAA	-22	NA	5073887	5082000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
ENSMUST00000236166.2	chr17	+	1047	5	FSM	ENSMUSG00000024181.10	ENSMUST00000236166.2	1047	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	700.577752644201	3284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342473	26345587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344451_26344539_26345265
ENSMUST00000236170.2	chr19	-	352	3	FSM	ENSMUSG00000071528.5	ENSMUST00000236170.2	352	3	0	0	0	0	multi-exon	FALSE	canonical	3	3669	junction_2	1312	1129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTCATTGTATACACGA	NA	False	NA	NA	False	AATAAA	-16	NA	47079086	47074305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_47074487_47074572_47074669_47079011
ENSMUST00000236178.2	chr19	-	870	8	FSM	ENSMUSG00000034108.7	ENSMUST00000236178.2	870	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	202.991002112841	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889301	4875393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883476_4884267_4884339_4888858_4888932_4889224
ENSMUST00000236181.2	chr19	+	1318	7	FSM	ENSMUSG00000040385.8	ENSMUST00000236181.2	1318	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1475.23350317463	960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATAGCCTCTGTCTCTCT	3645	False	NA	30	True	AATAAA	-19	NA	4242431	4245418	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4242485_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244690_4244770_4244906_4244980
ENSMUST00000236185.2	chr19	-	1593	4	FSM	ENSMUSG00000024666.7	ENSMUST00000236185.2	1593	4	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	28.0158685192676	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTGGTGTCTTCATG	1765	False	NA	-6	True	AATAAA	-13	NA	10554471	10547843	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10548969_10552200_10552373_10552603_10552876_10554447
ENSMUST00000236206.2	chr19	+	3315	11	FSM	ENSMUSG00000034820.5	ENSMUST00000236206.2	3315	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	86.2092802429066	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAATGTAAAGTGAC	NA	False	NA	NA	False	TTTAAA	-5	NA	10502629	10524766	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_10502692_10503315_10503425_10509144_10509364_10509494_10509561_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
ENSMUST00000236211.2	chr19	-	423	2	FSM	ENSMUSG00000060803.7	ENSMUST00000236211.2	423	2	0	0	0	0	multi-exon	FALSE	canonical	3	4470	junction_1	0	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCTG	NA	False	NA	NA	False	AATAAA	-14	NA	4085993	4085408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4085662_4085823
ENSMUST00000236213.2	chr18	+	1776	11	FSM	ENSMUSG00000024614.8	ENSMUST00000236213.2	1776	11	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_10	65.2935678302235	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACAACTATTGTTACCACA	4790	False	NA	NA	False	AATAAA	-22	NA	90528325	90550032	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653_90541754_90542404_90542483_90545999_90546067_90548183_90548283_90549122
ENSMUST00000236217.2	chr19	+	503	5	FSM	ENSMUSG00000038274.14	ENSMUST00000236217.2	503	5	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	6188.20864628852	93475	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1107	False	NA	4	True	AATAAA	-16	NA	6107998	6109549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6108032_6108257_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUST00000236220.2	chr18	+	1571	9	FSM	ENSMUSG00000035765.11	ENSMUST00000236220.2	1571	9	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_8	64.1424196612507	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTTTGTGTTATCTGT	NA	False	NA	NA	False	NA	NA	NA	75151851	75239490	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75238937
ENSMUST00000236232.2	chr17	+	1082	6	FSM	ENSMUSG00000060586.12	ENSMUST00000236232.2	1082	6	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	73.665731517443	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTTCATAGAGTTTCA	NA	False	NA	12	True	AATAAA	-16	NA	34524899	34535173	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_34525022_34528617_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
ENSMUST00000236263.2	chr18	-	414	2	FSM	ENSMUSG00000117662.2	ENSMUST00000236263.2	414	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTAACTGAGTTTTTATT	NA	False	NA	NA	False	TTTAAA	-22	NA	42408262	42407446	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_42407614_42408015
ENSMUST00000236299.2	chr17	+	442	4	FSM	ENSMUSG00000015575.16	ENSMUST00000236299.2	442	4	0	0	0	0	multi-exon	TRUE	canonical	3	20	junction_3	700.129035726034	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAGGTGACTATGTTCTT	NA	False	NA	NA	False	NA	NA	NA	26895385	26914452	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26895553_26901651_26901700_26913452_26913556_26914328
ENSMUST00000236326.2	chr17	-	937	6	FSM	ENSMUSG00000024194.17	ENSMUST00000236326.2	937	6	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_5	250.477144665936	4207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9276	False	NA	-21	True	AATAAA	-14	NA	27158519	27156949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158343_27158424
ENSMUST00000236330.2	chr18	-	760	4	FSM	ENSMUSG00000006050.13	ENSMUST00000236330.2	760	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	696.127542592272	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCATTCTGATGTCAGA	NA	False	NA	-12	True	NA	NA	NA	36803343	36800301	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803300
ENSMUST00000236336.2	chr19	+	392	5	FSM	ENSMUSG00000038274.14	ENSMUST00000236336.2	392	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	5802.4913345476	899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCCAGACTTCTTATGTT	1089	False	NA	-5	True	AATAAA	-7	NA	6107980	6109540	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6108032_6108272_6108356_6108562_6108603_6109173_6109230_6109378
ENSMUST00000236361.2	chr17	-	1320	7	FSM	ENSMUSG00000039615.10	ENSMUST00000236361.2	1320	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	576.693568736658	2380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCATGTGCTGGTGCA	6759	False	NA	-19	True	AATAAA	-15	NA	26051921	26049609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051281_26051665
ENSMUST00000236370.2	chr19	-	662	4	FSM	ENSMUSG00000084957.4	ENSMUST00000236370.2	662	4	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_3	45.8427263102398	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTGTTATGAATGTAAGA	NA	False	NA	NA	False	TATAAA	-31	NA	53932659	53919534	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_53919934_53920560_53920637_53931896_53932011_53932586
ENSMUST00000236395.2	chr18	-	703	4	FSM	ENSMUSG00000001380.8	ENSMUST00000236395.2	703	4	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_1	64.6030615029625	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	36916173	36906285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_36906669_36909229_36909350_36915732_36915823_36916063
ENSMUST00000236397.2	chr19	+	1709	10	FSM	ENSMUSG00000024835.16	ENSMUST00000236397.2	1709	10	0	0	0	0	multi-exon	FALSE	canonical	1	13	junction_3	211.510441034637	651	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3610	False	NA	18	True	AATAAA	-19	NA	4198652	4204034	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4198722_4199340_4199544_4199861_4199985_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
ENSMUST00000236403.2	chr19	+	715	2	FSM	ENSMUSG00000024661.8	ENSMUST00000236403.2	715	2	0	0	0	0	multi-exon	FALSE	canonical	3	5325	junction_1	0	1623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTTTCTTTGTGATTG	6370	False	NA	18	True	AATAAA	-16	NA	9961510	9962457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_9961692_9961923
ENSMUST00000236414.2	chr18	+	718	4	FSM	ENSMUSG00000037058.17	ENSMUST00000236414.2	718	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	1373.52126545848	1691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCAAATTAAATCACCTCC	6088	False	NA	-19	True	NA	NA	NA	35733117	35749572	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35733171_35743923_35744088_35746375_35746556_35749251
ENSMUST00000236415.2	chr18	-	1956	10	FSM	ENSMUSG00000024644.18	ENSMUST00000236415.2	1956	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	195.289591866433	1175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAACTGCCGTGGTCTGA	NA	False	NA	-4	True	AATAAA	-19	NA	84698865	84685595	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832_84696996_84698693
ENSMUST00000236421.2	chr18	+	524	3	FSM	ENSMUSG00000036299.6	ENSMUST00000236421.2	524	3	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	354	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAAGGTCCGTGTGAGCA	NA	False	NA	NA	False	ATTAAA	-43	NA	75138939	75142664	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_75138972_75141721_75141898_75142348
ENSMUST00000236451.2	chr19	-	984	8	FSM	ENSMUSG00000034108.7	ENSMUST00000236451.2	984	8	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	206.828727330078	975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889298	4875393	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884221_4884339_4888858_4888932_4889224
ENSMUST00000236465.2	chr19	+	1620	8	FSM	ENSMUSG00000003559.9	ENSMUST00000236465.2	1620	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	62.3112660563964	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATACCACAATGGATGTC	6434	False	NA	22	True	AATAAA	-32	NA	46696356	46729526	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_46696637_46697406_46697558_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
ENSMUST00000236476.2	chr17	+	819	3	FSM	ENSMUSG00000024301.11	ENSMUST00000236476.2	819	3	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	42	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	27136064	27140482	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_27136260_27139770_27139906_27139993
ENSMUST00000236503.2	chr17	-	1987	15	FSM	ENSMUSG00000002625.11	ENSMUST00000236503.2	1987	15	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_11	68.7455007804221	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTTCGTTTGTGCTGTG	NA	False	NA	-1	True	AATAAA	-16	NA	32569569	32540398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557329_32557430_32557489_32557764_32557798_32564297_32564373_32569460
ENSMUST00000236510.2	chr19	+	1284	8	FSM	ENSMUSG00000024866.11	ENSMUST00000236510.2	1284	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	10.3332236114429	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGACAGTTCTTGTTCTT	NA	False	NA	3	True	TATAAA	-17	NA	4036569	4040005	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4036612_4036822_4036952_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038716_4039652
ENSMUST00000236515.2	chr17	-	1701	6	FSM	ENSMUSG00000039615.10	ENSMUST00000236515.2	1701	6	0	0	0	0	multi-exon	FALSE	canonical	3	1378	junction_3	90.6986218197388	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCATGTGCTGGTGCAGT	6765	False	NA	-17	True	AATAAA	-17	NA	26051915	26049607	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019
ENSMUST00000236522.2	chr18	+	795	3	FSM	ENSMUSG00000024537.6	ENSMUST00000236522.2	795	3	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_2	23.5	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	67774677	67779557	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_67774806_67777378_67777551_67779062
ENSMUST00000236539.2	chr18	-	484	5	FSM	ENSMUSG00000024352.13	ENSMUST00000236539.2	484	5	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_3	71.3810198862415	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGCTGTAATGCCCAACC	NA	False	NA	-11	True	AATAAA	-22	NA	35793880	35789745	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_35789898_35790001_35790105_35793335_35793398_35793496_35793628_35793844
ENSMUST00000236547.2	chr17	-	926	6	FSM	ENSMUSG00000024177.10	ENSMUST00000236547.2	926	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	147.011019995101	3093	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTCTACTTACTAGTTC	NA	False	NA	-2	True	ATTAAA	-20	NA	26314447	26310709	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26311127_26311480_26311532_26312590_26312704_26312832_26312935_26313110_26313245_26314338
ENSMUST00000236561.2	chr19	-	876	6	FSM	ENSMUSG00000024667.13	ENSMUST00000236561.2	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	26.7686383665662	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACAGGGCTGGTTGATT	NA	False	NA	-10	True	AATAAA	-10	NA	10533120	10527831	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10528184_10528321_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533076
ENSMUST00000236565.2	chr17	-	1408	6	FSM	ENSMUSG00000039615.10	ENSMUST00000236565.2	1408	6	0	0	0	0	multi-exon	FALSE	canonical	3	1486	junction_1	49.0167318372002	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCATGTGCTGGTGCA	6787	False	NA	-19	True	AATAAA	-15	NA	26051893	26049609	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26049985_26050075_26050193_26050282_26050606_26050769_26050936_26051019_26051219_26051665
ENSMUST00000236566.2	chr19	-	414	3	FSM	ENSMUSG00000071662.5	ENSMUST00000236566.2	414	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	678.5	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTCTCTGACTCGTTTG	NA	False	NA	NA	False	NA	NA	NA	8775889	8775266	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_8775504_8775587_8775698_8775822
ENSMUST00000236652.2	chr18	+	367	3	FSM	ENSMUSG00000024608.12	ENSMUST00000236652.2	367	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	14016.5	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCCCAGAGGTGCAAGGAG	NA	False	NA	NA	False	NA	NA	NA	60880169	60910093	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_60880294_60909472_60909624_60910001
ENSMUST00000236683.2	chr17	-	627	5	FSM	ENSMUSG00000057411.10	ENSMUST00000236683.2	627	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_4	82.996987897152	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8378	False	NA	-7	True	AATAAA	-17	NA	26011361	26009479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011304
ENSMUST00000236755.2	chr18	+	489	4	FSM	ENSMUSG00000024594.10	ENSMUST00000236755.2	489	4	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_1	295.732987676384	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACCCTGTGCATGGCATC	NA	False	NA	NA	False	NA	NA	NA	57506963	57517274	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_57507156_57507598_57507763_57514699_57514804_57517245
ENSMUST00000236801.2	chr19	-	1005	7	FSM	ENSMUSG00000059734.8	ENSMUST00000236801.2	1005	7	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_6	705.446824517782	13885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGTGTTGTTCCATTT	NA	False	NA	-1	True	CATAAA	-22	NA	3962488	3958862	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962202
ENSMUST00000236873.2	chr18	-	2482	14	FSM	ENSMUSG00000024587.11	ENSMUST00000236873.2	2482	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	1471.99684444606	5460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	AATAAA	-23	NA	64649550	64632725	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
ENSMUST00000236885.2	chr19	-	838	5	FSM	ENSMUSG00000084957.4	ENSMUST00000236885.2	838	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	83.9315197050548	1002	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGCTGACTGCTACGGA	NA	False	NA	NA	False	AATACA	-21	NA	53932611	53919390	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_53919934_53920560_53920637_53921921_53922002_53931896_53932011_53932586
ENSMUST00000236888.2	chr17	-	719	6	FSM	ENSMUSG00000024194.17	ENSMUST00000236888.2	719	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	368.320838400436	2382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9387	False	NA	-18	True	AATAAA	-17	NA	27158408	27156946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157624_27157700_27157761_27157857_27158067_27158290
ENSMUST00000236900.2	chr19	-	986	1	FSM	ENSMUSG00000084957.4	ENSMUST00000236900.2	986	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	68	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAAAAGAACAA	NA	False	NA	NA	False	NA	NA	NA	53932909	53931923	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_53931900_53932900
ENSMUST00000236902.2	chr19	+	950	5	FSM	ENSMUSG00000025068.9	ENSMUST00000236902.2	950	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	136.789985013524	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGTCCAAACCACCTCAG	9256	False	NA	21	True	ATTAAA	-30	NA	47844196	47853229	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_47844227_47846297_47846521_47847870_47847970_47851817_47851922_47852735
ENSMUST00000236928.2	chr19	+	835	3	FSM	ENSMUSG00000118245.2	ENSMUST00000236928.2	835	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	1	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTAGCGACTCGAGAACT	NA	False	NA	NA	False	AATAAA	-43	NA	4251777	4253239	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_4251798_4252125_4252238_4252536
ENSMUST00000236950.2	chr19	-	2437	18	FSM	ENSMUSG00000034371.10	ENSMUST00000236950.2	2437	18	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_17	12.9229818620786	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTTTGTCCCTGTTTACA	9789	False	NA	-23	True	AATAAA	-17	NA	10582748	10569560	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582582
ENSMUST00000236962.2	chr19	-	1478	6	FSM	ENSMUSG00000025024.8	ENSMUST00000236962.2	1478	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	83.1903840596977	532	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTAGGATGTGCGCCCCT	NA	False	NA	-8	True	ATTAAA	-16	NA	53379005	53368309	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_53369033_53369671_53369826_53371987_53372167_53372884_53373028_53377733_53377854_53378846
ENSMUST00000236963.2	chr17	-	1010	3	FSM	ENSMUSG00000002274.14	ENSMUST00000236963.2	1010	3	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	6.5	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTAGTCATGGTCTT	6253	False	NA	-2	True	NA	NA	NA	26015697	26013798	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26014266_26014347_26014408_26015214
ENSMUST00000236967.2	chr17	-	795	3	FSM	ENSMUSG00000024177.10	ENSMUST00000236967.2	795	3	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	27	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACTTACTAGTTCTG	NA	False	NA	0	True	ATTAAA	-22	NA	26313142	26310707	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26311127_26312590_26312935_26313110
ENSMUST00000236969.2	chr18	+	1656	7	FSM	ENSMUSG00000037815.8	ENSMUST00000236969.2	1656	7	0	0	0	0	multi-exon	FALSE	canonical	3	1595	junction_4	198.935221170667	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCAGTATTATAAAATTT	NA	False	NA	NA	False	AAAAAG	-21	NA	35251939	35316103	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402
ENSMUST00000236970.2	chr19	-	2217	10	FSM	ENSMUSG00000024826.16	ENSMUST00000236970.2	2217	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	234.668087116913	443	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGCTGGACAGTTTGT	7071	False	NA	-26	True	AATAAA	-14	NA	5957100	5947414	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5954267_5954341_5954481_5954575_5955416_5955581_5956551_5956660_5957028
ENSMUST00000236976.2	chr19	+	744	4	FSM	ENSMUSG00000038274.14	ENSMUST00000236976.2	744	4	0	0	0	0	multi-exon	FALSE	canonical	3	14010	junction_2	399.82023738453	24581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1092	False	NA	4	True	AATAAA	-16	NA	6107983	6109549	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUST00000236978.2	chr19	-	2731	17	FSM	ENSMUSG00000024941.10	ENSMUST00000236978.2	2731	17	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_12	26.041358331508	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGCCAAGAGTAAATTAAA	9889	False	NA	65	True	NA	NA	NA	5821447	5808378	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809371_5809692_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
ENSMUST00000236980.2	chr19	+	999	9	Antisense	novelGene_ENSMUSG00000036748.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1511	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACCCCCCCTAGCCCCAC	8675	False	NA	NA	False	NA	NA	NA	46318984	46327056	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr19_+_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46327007
ENSMUST00000236985.2	chr19	-	2722	11	FSM	ENSMUSG00000013662.7	ENSMUST00000236985.2	2722	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	174.081704954886	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTTTCCCCACTTAGT	NA	False	NA	-18	True	AATAAA	-17	NA	32717151	32650221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32692290_32692382_32717041
ENSMUST00000237001.2	chr19	+	576	5	FSM	ENSMUSG00000025036.8	ENSMUST00000237001.2	576	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	15.5643824162734	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACTGTCTGCAAACTAA	6130	False	NA	18	True	AATAAA	-18	NA	46579559	46585337	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_46579610_46579931_46579982_46580738_46580787_46583110_46583308_46585106
ENSMUST00000237021.2	chr18	+	708	3	FSM	ENSMUSG00000117869.2	ENSMUST00000237021.2	708	3	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	17	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGTTAAAAGAAAATGGGA	NA	False	NA	NA	False	NA	NA	NA	35686464	35690283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_35686523_35687479_35687515_35689668
ENSMUST00000237025.2	chr19	+	941	7	FSM	ENSMUSG00000024875.6	ENSMUST00000237025.2	941	7	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_5	203.430099925148	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTTGACCCTGGTTCC	NA	False	NA	26	True	NA	NA	NA	5138587	5142533	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5140031_5140111_5141395_5141454_5142156_5142251_5142329
ENSMUST00000237027.2	chr18	-	848	1	FSM	ENSMUSG00000024587.11	ENSMUST00000237027.2	848	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	124	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATCAAATAGGAA	NA	False	NA	NA	False	NA	NA	NA	64649570	64648722	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_64648700_64649600
ENSMUST00000237033.2	chr19	+	989	6	FSM	ENSMUSG00000069833.14	ENSMUST00000237033.2	989	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	28.9799930986879	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGTTCTGTGATCACC	6461	False	NA	13	True	AATAAA	-14	NA	8977023	9054278	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8977137_8977463_8977621_8978039_8978228_9014522_9014623_9022988_9023081_9053939
ENSMUST00000237080.2	chr17	-	945	6	FSM	ENSMUSG00000025732.7	ENSMUST00000237080.2	945	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	129.343882731268	1238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCGGGTGTTGGTGATTG	7792	False	NA	-4	True	AATAAA	-15	NA	26087708	26082671	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26083014_26083224_26083327_26083567_26083696_26084508_26084642_26087387_26087518_26087598
ENSMUST00000237087.2	chr19	-	504	3	FSM	ENSMUSG00000035885.6	ENSMUST00000237087.2	504	3	0	0	0	0	multi-exon	FALSE	canonical	1	33	junction_2	91	16695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTTTGTAACAATAAAGTC	7439	False	NA	NA	False	NA	NA	NA	7194908	7192559	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_7192850_7193845_7193915_7194763
ENSMUST00000237117.2	chr19	+	826	8	FSM	ENSMUSG00000080268.5	ENSMUST00000237117.2	826	8	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_2	18.2600265998867	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTCCATCCCTGACCAG	7497	False	NA	NA	False	NA	NA	NA	5096148	5099651	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020_5099061_5099434
ENSMUST00000237158.2	chr17	-	1613	7	FSM	ENSMUSG00000019214.15	ENSMUST00000237158.2	1613	7	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_6	169.684756730434	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGCTTGGCAGGGCCC	5737	False	NA	NA	False	NA	NA	NA	25946330	25943754	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946095_25946220
ENSMUST00000237167.2	chr19	-	732	3	FSM	ENSMUSG00000024844.16	ENSMUST00000237167.2	732	3	0	0	0	0	multi-exon	FALSE	canonical	3	736	junction_2	2653	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATCTGTTGGATGCCCTT	8743	False	NA	-107	True	NA	NA	NA	5416634	5414766	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5415187_5415845_5415985_5416461
ENSMUST00000237177.2	chr19	-	1504	2	FSM	ENSMUSG00000034321.15	ENSMUST00000237177.2	1504	2	0	0	0	0	multi-exon	FALSE	canonical	3	822	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	41921737	41920146	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_41921604_41921690
ENSMUST00000237183.2	chr17	+	1743	6	FSM	ENSMUSG00000041199.4	ENSMUST00000237183.2	1743	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	28.5096474899287	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGACCATGAGCATATCT	NA	False	NA	24	True	AATAAA	-21	NA	25946643	25950438	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25946822_25947225_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
ENSMUST00000237186.2	chr17	-	1341	7	FSM	ENSMUSG00000039615.10	ENSMUST00000237186.2	1341	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	575.587139845528	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGCTTGCCAGTTGCCTG	6302	False	NA	1	True	AATAAA	-35	NA	26052378	26049589	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051219_26052059
ENSMUST00000237192.2	chr18	-	1104	4	FSM	ENSMUSG00000078963.4	ENSMUST00000237192.2	1104	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	16.9901932498329	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACCTTATGTGTATG	NA	False	NA	NA	False	AATACA	-14	NA	80280048	80272972	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_80273777_80276629_80276725_80278663_80278731_80279910
ENSMUST00000237219.2	chr19	+	1719	9	FSM	ENSMUSG00000003559.9	ENSMUST00000237219.2	1719	9	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_4	13.865424623862	1022	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTCTGTAGTTTGTCT	6484	False	NA	34	True	AATAAA	-44	NA	46696406	46729538	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_46696637_46697406_46697558_46697985_46698123_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
ENSMUST00000237234.2	chr19	+	972	6	FSM	ENSMUSG00000047656.10	ENSMUST00000237234.2	972	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	13.8650640099496	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTTGTGGTTCCTCATC	NA	False	NA	36	True	ATTAAA	-42	NA	6973498	6976412	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6973893_6974063_6974146_6975559_6975735_6975876_6975934_6976025_6976137_6976259
ENSMUST00000237240.2	chr19	+	2355	4	FSM	ENSMUSG00000048832.10	ENSMUST00000237240.2	2355	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	56.9814784722974	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGTCTGTGGTGTCCATG	NA	False	NA	11	True	AATAAA	-14	NA	10666098	10691985	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_10666174_10683573_10683673_10688634_10688718_10689887
ENSMUST00000237244.2	chr19	+	1107	1	FSM	ENSMUSG00000024959.15	ENSMUST00000237244.2	1107	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGGAAGTCTTTCGAGGC	730	False	NA	NA	False	NA	NA	NA	6927842	6928949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6927800_6928900
ENSMUST00000237316.2	chr19	+	2062	3	FSM	ENSMUSG00000024661.8	ENSMUST00000237316.2	2062	3	0	0	0	0	multi-exon	FALSE	canonical	3	5325	junction_1	204.5	2332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTTTTCTTTGTGATT	4927	False	NA	17	True	AATAAA	-15	NA	9960067	9962456	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_9961692_9961923_9962050_9962144
ENSMUST00000237323.2	chr17	-	975	9	FSM	ENSMUSG00000061613.14	ENSMUST00000237323.2	975	9	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_6	2395.95355495469	24304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGTGACTTCTTGTAA	NA	False	NA	-18	True	AATAAA	-18	NA	31877729	31866055	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31871475_31871543_31873952_31874041_31877626
ENSMUST00000237341.2	chr19	-	780	7	FSM	ENSMUSG00000059734.8	ENSMUST00000237341.2	780	7	0	0	0	0	multi-exon	FALSE	canonical	3	1174	junction_6	307.096076171611	14359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACCTGTTGTGTTGTTCC	NA	False	NA	-5	True	CATAAA	-18	NA	3962774	3958866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962709
ENSMUST00000237347.2	chr19	+	1940	9	FSM	ENSMUSG00000037847.15	ENSMUST00000237347.2	1940	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_8	10.6880482315528	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTCTCAATTCATACAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	18609313	18629792	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_18609446_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418_18622503_18628599
ENSMUST00000237359.2	chr17	-	2044	17	FSM	ENSMUSG00000063011.8	ENSMUST00000237359.2	2044	17	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_13	11.5648646230728	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGTCCTGTAGTGTTCC	6591	False	NA	-4	True	AATAAA	-20	NA	25973352	25967588	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972037_25972351_25972399_25972747_25972792_25973105_25973197_25973316
ENSMUST00000237369.2	chr18	-	2103	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237369.2	2103	15	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_12	1341.18505510642	5126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTCTGACATCCAGTA	NA	False	NA	-10	True	AATAAA	-26	NA	64649626	64633283	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644970_64645054_64645121_64648396_64648480_64649486
ENSMUST00000237371.2	chr19	+	2362	12	FSM	ENSMUSG00000024891.7	ENSMUST00000237371.2	2362	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	26.6197590193438	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGACGGATTCCTGGAGTGT	4312	False	NA	13	True	ATTAAA	-14	NA	5074141	5081992	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5074311_5074538_5074621_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
ENSMUST00000237380.2	chr19	-	806	5	FSM	ENSMUSG00000050623.6	ENSMUST00000237380.2	806	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_4	16.5529453572468	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTGCGTGGCTGCTTGC	7411	False	NA	1	True	ATTAAA	-22	NA	6902727	6899790	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6900029_6900668_6900736_6900890_6900968_6902161_6902518_6902659
ENSMUST00000237383.2	chr7	-	1306	5	FSM	ENSMUSG00000038782.8	ENSMUST00000237383.2	1306	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.34477204006491	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTATCTGACTGTTTATC	NA	False	NA	NA	False	AATAAA	-23	NA	43896119	43879349	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_43880066_43880205_43880335_43880749_43880897_43881779_43881981_43896006
ENSMUST00000237400.2	chr18	-	2745	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237400.2	2745	15	0	0	0	0	multi-exon	FALSE	canonical	3	3478	junction_14	514.735973533014	13123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTGACTTATTTTCTC	NA	False	NA	NA	False	AATAAA	-31	NA	64649723	64632717	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
ENSMUST00000237408.2	chr19	+	2683	10	FSM	ENSMUSG00000024989.16	ENSMUST00000237408.2	2683	10	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_9	135.940982110929	929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043536	38062869	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_38043766_38045857_38045991_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061748
ENSMUST00000237411.2	chr17	-	1958	6	FSM	ENSMUSG00000057789.15	ENSMUST00000237411.2	1958	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	53.687987483235	1262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTCGCCTGGCATCTTTA	NA	False	NA	-2	True	AATAAA	-18	NA	27247561	27238785	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241847_27244766_27244868_27247384
ENSMUST00000237440.2	chr19	+	1721	10	FSM	ENSMUSG00000045098.20	ENSMUST00000237440.2	1721	10	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	94.5832966226067	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTTAGAATTGACCAAA	NA	False	NA	4	True	AATAAA	-14	NA	3818145	3855463	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_3818341_3832219_3832280_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916
ENSMUST00000237467.2	chr19	-	2101	10	FSM	ENSMUSG00000024824.8	ENSMUST00000237467.2	2101	10	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_3	31.4889751429854	881	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAAAGGAAAGACAC	6027	False	NA	-24	True	NA	NA	NA	4251606	4245218	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
ENSMUST00000237478.2	chr18	+	2165	3	FSM	ENSMUSG00000057561.11	ENSMUST00000237478.2	2165	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	841.5	2209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGAGAGGCTTTTTTT	NA	False	NA	27	True	AATAAA	-21	NA	46730864	46742316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_46731224_46731707_46731768_46740570
ENSMUST00000237487.2	chr18	-	1929	5	FSM	ENSMUSG00000052102.16	ENSMUST00000237487.2	1929	5	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	550.877028019866	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCATTCTCCTGAGTT	NA	False	NA	-7	True	AATAAA	-17	NA	38472033	38460587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_38462027_38466206_38466390_38468068_38468171_38471143_38471276_38471960
ENSMUST00000237520.2	chr18	-	452	2	FSM	ENSMUSG00000024493.10	ENSMUST00000237520.2	452	2	0	0	0	0	multi-exon	FALSE	canonical	3	1504	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTGTGCGTCATGACAT	NA	False	NA	NA	False	AATAAA	-33	NA	42395156	42389938	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_42390260_42395025
ENSMUST00000237565.2	chr19	-	429	2	FSM	ENSMUSG00000038155.12	ENSMUST00000237565.2	429	2	0	0	0	0	multi-exon	FALSE	canonical	3	3855	junction_1	0	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	4090883	4090286	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4090540_4090707
ENSMUST00000237584.2	chr19	-	503	3	FSM	ENSMUSG00000118001.2	ENSMUST00000237584.2	503	3	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	2.5	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCACGTGTATGCAGA	NA	False	NA	NA	False	NA	NA	NA	26461850	26460956	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_26461343_26461656_26461733_26461809
ENSMUST00000237585.2	chr18	-	2268	14	FSM	ENSMUSG00000024587.11	ENSMUST00000237585.2	2268	14	0	0	0	0	multi-exon	FALSE	canonical	3	3478	junction_13	534.16599817797	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTATGGTCTGACATC	NA	False	NA	-15	True	AATAAA	-21	NA	64649508	64633288	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_64633721_64634373_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
ENSMUST00000237603.2	chr19	+	1036	7	FSM	ENSMUSG00000024875.6	ENSMUST00000237603.2	1036	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	207.598704770098	2196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACTTGGCTTGACCCTGG	NA	False	NA	22	True	NA	NA	NA	5138565	5142529	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5141395_5141454_5141568_5141725_5142156_5142251_5142329
ENSMUST00000237609.2	chr17	-	785	5	FSM	ENSMUSG00000024194.17	ENSMUST00000237609.2	785	5	0	0	0	0	multi-exon	FALSE	canonical	3	511	junction_4	189.078026221981	2293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9398	False	NA	-18	True	AATAAA	-17	NA	27158397	27156946	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857_27158067_27158290
ENSMUST00000237619.2	chr18	-	715	4	FSM	ENSMUSG00000024556.5	ENSMUST00000237619.2	715	4	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_1	22.8375908439475	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATCTTTGTTTTTGTAG	360	False	NA	NA	False	AATAAA	-13	NA	73948520	73930732	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_-_73931050_73934799_73934934_73938122_73938241_73948374
ENSMUST00000237630.2	chr19	-	778	4	FSM	ENSMUSG00000057506.6	ENSMUST00000237630.2	778	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	597.749668897162	751	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTTTGGTTTTTG	966	False	NA	NA	False	ATTAAA	-18	NA	44134882	44127684	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_44128153_44130562_44130668_44131459_44131580_44134797
ENSMUST00000237634.2	chr19	-	775	5	FSM	ENSMUSG00000118346.2	ENSMUST00000237634.2	775	5	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_4	80.9073544246751	1709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATGGATTTCTTGATGT	5074	False	NA	-4	True	AATATA	-17	NA	8751831	8749888	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8750987_8751698
ENSMUST00000237650.2	chr19	-	488	4	FSM	ENSMUSG00000038155.12	ENSMUST00000237650.2	488	4	0	0	0	0	multi-exon	FALSE	canonical	3	2023	junction_2	767.872819330562	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAACATGTGAACCGTCCC	NA	False	NA	NA	False	NA	NA	NA	4091528	4090394	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397
ENSMUST00000237692.2	chr17	-	1823	9	FSM	ENSMUSG00000024002.19	ENSMUST00000237692.2	1823	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_8	78.3700157904795	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GACAAAGAAAAATAACAGCA	NA	False	NA	87	True	NA	NA	NA	32503107	32432536	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32503036
ENSMUST00000237700.2	chr18	+	1684	8	FSM	ENSMUSG00000079614.5	ENSMUST00000237700.2	1684	8	0	0	0	0	multi-exon	FALSE	canonical	3	1621	junction_6	144.078210053585	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTTTGTGAGACCAGTG	NA	False	NA	NA	False	AATAAA	-11	NA	67908044	67925663	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933
ENSMUST00000237703.2	chr17	-	1528	2	FSM	ENSMUSG00000057411.10	ENSMUST00000237703.2	1528	2	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	0	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8370	False	NA	-7	True	AATAAA	-17	NA	26011369	26009479	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_26009958_26010319
ENSMUST00000237704.2	chr19	-	743	2	FSM	ENSMUSG00000024844.16	ENSMUST00000237704.2	743	2	0	0	0	0	multi-exon	FALSE	canonical	3	1029	junction_1	0	1963	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTGTTCTGTGTCAG	8558	False	NA	-8	True	AATAAA	-15	NA	5416819	5414667	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_5415187_5416595
ENSMUST00000237720.2	chr19	-	425	5	FSM	ENSMUSG00000071528.5	ENSMUST00000237720.2	425	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2533.27548590752	9098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATTATGAACCTGGAA	NA	False	NA	-22	True	NA	NA	NA	47079073	47071924	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_47072009_47073207_47073298_47074393_47074487_47074572_47074669_47079011
ENSMUST00000237738.2	chr19	-	1357	8	FSM	ENSMUSG00000024792.10	ENSMUST00000237738.2	1357	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	215.875247420772	1025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGAAGCAGCTTTTTC	6427	False	NA	NA	False	AATAAA	-18	NA	6134986	6130791	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134079_6134381_6134492_6134824
ENSMUST00000237742.2	chr19	-	2683	10	FSM	ENSMUSG00000025228.6	ENSMUST00000237742.2	2683	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	95.5045083287229	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCAGTCTGACCTCTTTC	NA	False	NA	-5	True	AATAAA	-16	NA	46384177	46365252	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_46366909_46367046_46367088_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370858_46372658_46372785_46373451_46373528_46375890_46375956_46384068
ENSMUST00000237785.2	chr17	+	1761	6	FSM	ENSMUSG00000041199.4	ENSMUST00000237785.2	1761	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	25.198412648419	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGAGAGTGACCATGAGC	NA	False	NA	18	True	AATAAA	-15	NA	25946690	25950432	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_25946822_25947154_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
ENSMUST00000237827.2	chr19	-	1231	5	FSM	ENSMUSG00000024668.9	ENSMUST00000237827.2	1231	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	111.850346445597	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTCACAATTATCTTCATT	NA	False	NA	-99	True	AAGAAA	-17	NA	10502546	10479806	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_10480494_10482797_10482890_10494343_10494454_10494532_10494751_10502422
ENSMUST00000237840.2	chr19	+	472	4	FSM	ENSMUSG00000038274.14	ENSMUST00000237840.2	472	4	0	0	0	0	multi-exon	FALSE	canonical	3	14010	junction_2	399.82023738453	23418	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTCTTATGTTTTCTTC	1361	False	NA	1	True	AATAAA	-13	NA	6108252	6109546	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUST00000237859.2	chr19	+	450	5	FSM	ENSMUSG00000038274.14	ENSMUST00000237859.2	450	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	6192.96432958402	3115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTGCCATGCTAATAAAGC	1080	False	NA	-29	True	NA	NA	NA	6107971	6109516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_6108032_6108304_6108356_6108457_6108603_6109173_6109230_6109378
ENSMUST00000237862.2	chr19	-	1619	10	FSM	ENSMUSG00000037916.15	ENSMUST00000237862.2	1619	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	453.44895039826	1110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTCTCTTTTTGTGGCAC	6538	False	NA	NA	False	NA	NA	NA	4062694	4057383	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062593
ENSMUST00000237867.2	chr19	-	683	5	FSM	ENSMUSG00000057506.6	ENSMUST00000237867.2	683	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	551.264625656318	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATATGTAGTAAGTAGCA	1010	False	NA	NA	False	AATAAA	-17	NA	44134838	44130166	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_44130467_44130562_44130668_44131459_44131580_44134379_44134497_44134797
ENSMUST00000237893.2	chr19	-	806	7	FSM	ENSMUSG00000060803.7	ENSMUST00000237893.2	806	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1359.76024234667	15069	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGAGGTGTCTTTGGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	4087977	4085410	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087865
ENSMUST00000237950.2	chr17	+	1046	5	FSM	ENSMUSG00000024181.10	ENSMUST00000237950.2	1046	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	613.108677152754	5187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342493	26345587	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_+_26342824_26343529_26343693_26344242_26344366_26344451_26344539_26345244
ENSMUST00000237982.2	chr19	-	670	7	FSM	ENSMUSG00000060803.7	ENSMUST00000237982.2	670	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	1372.45627333705	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTATGTGGCTCGCCTCA	NA	False	NA	NA	False	NA	NA	NA	4087925	4085572	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087472_4087584_4087621_4087862
ENSMUST00000238036.2	chr19	+	1291	9	FSM	ENSMUSG00000071655.13	ENSMUST00000238036.2	1291	9	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_4	107.257575490032	14569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGAGGGGCTGGAGAG	5946	False	NA	3	True	ATTAAA	-16	NA	8848956	8853227	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
ENSMUST00000238046.2	chr17	-	722	8	FSM	ENSMUSG00000061613.14	ENSMUST00000238046.2	722	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	2869.75492802761	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCGGTCAAGAGACCGGGA	NA	False	NA	NA	False	NA	NA	NA	31877738	31866223	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870742_31870783_31873952_31874041_31877626
ENSMUST00000238095.2	chr19	-	679	6	FSM	ENSMUSG00000024953.18	ENSMUST00000238095.2	679	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	204.758394211324	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGTACAGGGTTGTCT	NA	False	NA	-9	True	AATAAA	-21	NA	6886898	6884073	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6884320_6884433_6884489_6884609_6884649_6884909_6885042_6885349_6885485_6886826
ENSMUST00000238120.2	chr17	-	2165	16	FSM	ENSMUSG00000063011.8	ENSMUST00000238120.2	2165	16	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_13	10.6111052937739	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCCTGTAGTGTTCCTA	6592	False	NA	-2	True	AATAAA	-22	NA	25973351	25967586	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972037_25972351_25972399_25972747_25972792_25973105
ENSMUST00000238168.2	chr18	+	2012	4	FSM	ENSMUSG00000057561.11	ENSMUST00000238168.2	2012	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	796.694141785639	4702	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGAGAGGCTTTTTTT	NA	False	NA	27	True	AATAAA	-21	NA	46730767	46742316	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr18_+_46730868_46731117_46731224_46731707_46731768_46740570
ENSMUST00000238230.2	chr2	+	2159	4	FSM	ENSMUSG00000095315.3	ENSMUST00000238230.2	2159	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	5.43650214343336	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACATTTTGGGGAGCATC	NA	False	NA	NA	False	AATAAA	-20	NA	150153350	150168932	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_150153479_150165621_150165749_150165947_150166009_150167089
ENSMUST00000238277.2	chr2	+	572	5	FSM	ENSMUSG00000074578.15	ENSMUST00000238277.2	572	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	409.357041590834	9059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905140	166907782	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_166905218_166905555_166905648_166907078_166907138_166907232_166907401_166907606
ENSMUST00000238583.2	chr4	-	1296	4	FSM	ENSMUSG00000045699.5	ENSMUST00000238583.2	1296	4	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	62.9938268580519	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	NNNNNNNNNNNNNNNNNNNN	NA	False	NA	NA	False	NA	NA	NA	146993984	146976152	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr4_-_146977116_146978205_146978333_146982168_146982273_146993882
ENSMUST00000238623.2	chr13	+	1525	4	FSM	ENSMUSG00000095909.3	ENSMUST00000238623.2	1525	4	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	62.9620697104393	547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATCATAAAAGAACCCAT	NA	False	NA	NA	False	NA	NA	NA	66261293	66270282	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_+_66261375_66267450_66267578_66267777_66267839_66269026
ENSMUST00000238758.2	chrY	+	1272	3	FSM	ENSMUSG00000096768.9	ENSMUST00000238758.2	1272	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1011.5	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGATATGCAGATGTGT	4125	False	NA	NA	False	AATAAA	-11	NA	90796179	90827727	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrY_+_90797249_90804593_90804687_90827617
ENSMUST00000238792.2	chr7	-	1503	12	FSM	ENSMUSG00000030619.11	ENSMUST00000238792.2	1503	12	0	0	0	0	multi-exon	FALSE	canonical	3	1777	junction_2	230.503903625897	549	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATTTTTTCCTAGTAAAA	NA	False	NA	NA	False	NA	NA	NA	89629910	89604144	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_89604272_89604738_89604813_89605462_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
ENSMUST00000238930.2	chr9	-	862	4	FSM	ENSMUSG00000040883.19	ENSMUST00000238930.2	862	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	87.3473271231327	1686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGCCATGGTCATTTTT	NA	False	NA	-7	True	AATAAA	-12	NA	21838831	21832305	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21838582
ENSMUST00000238932.2	chr9	-	2220	11	FSM	ENSMUSG00000062762.18	ENSMUST00000238932.2	2220	11	0	0	0	0	multi-exon	TRUE	canonical	3	488	junction_2	34.4551882885582	1056	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGTATAATGTTTGA	NA	False	NA	-8	True	ATTAAA	-17	NA	36708689	36690454	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_36691566_36693636_36693712_36694028_36694141_36695763_36695876_36696828_36696949_36697231_36697357_36697778_36697846_36699488_36699550_36701075_36701222_36704535_36704646_36708508
ENSMUST00000238953.2	chr10	-	3204	8	FSM	ENSMUSG00000075232.7	ENSMUST00000099945.6	3204	8	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_3	48.542848734549	1961	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGTTTTCTGTTTGGTGT	NA	False	NA	-5	True	AATAAA	-29	NA	40178182	40163453	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_-_40165466_40166113_40166270_40166373_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744
ENSMUST00000239007.2	chr11	-	561	4	FSM	ENSMUSG00000049154.13	ENSMUST00000239007.2	561	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	3.29983164553722	288	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAAGACTATGTCACAGA	NA	False	NA	NA	False	AATAAA	-21	NA	58692786	58683628	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_58683826_58687380_58687485_58689461_58689522_58692586
ENSMUST00000239015.2	chr7	-	1855	7	FSM	ENSMUSG00000008140.19	ENSMUST00000239015.2	1855	7	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_1	150.719386056782	4084	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATTTCTTGGTTCATTC	NA	False	NA	27	True	NA	NA	NA	44145937	44139361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr7_-_44140395_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
ENSMUST00000239016.2	chr11	-	1849	8	FSM	ENSMUSG00000042709.16	ENSMUST00000239016.2	1849	8	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_1	36.2902134443535	701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGTGAATCTTTG	NA	False	NA	-12	True	NA	NA	NA	60307925	60291463	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60307576
ENSMUST00000239050.2	chr5	+	795	6	FSM	ENSMUSG00000089798.11	ENSMUST00000239050.2	795	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	1.2	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGGTTGAATGGTTCC	NA	False	NA	NA	False	ATTAAA	-16	NA	107682576	107696243	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_107682675_107686995_107687090_107691785_107691880_107693553_107693723_107694066_107694146_107695982
ENSMUST00000239073.2	chr11	-	1958	9	FSM	ENSMUSG00000020321.17	ENSMUST00000239073.2	1958	9	0	0	0	0	multi-exon	FALSE	canonical	3	1237	junction_4	96.8522553944925	13010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAGTGTTTGCCTATACC	NA	False	NA	NA	False	ATTAAA	-5	NA	21521934	21506691	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_21507569_21508461_21508552_21509191_21509306_21509698_21509876_21512864_21512988_21514040_21514217_21515823_21515921_21516619_21516719_21521729
ENSMUST00000239075.2	chr2	+	1163	9	FSM	ENSMUSG00000026921.21	ENSMUST00000239075.2	1163	9	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	46.4239970273995	1257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTGTCAATGGGGGAA	172	False	NA	12	True	AATAAA	-12	NA	26476641	26482693	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482293_26482429
ENSMUST00000239076.2	chr3	+	1545	10	FSM	ENSMUSG00000118504.2	ENSMUST00000239076.2	1545	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	192.823529633307	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGATTTGGGCTGGCAGG	NA	False	NA	7	True	AATAAA	-16	NA	89960210	89973179	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89968944_89969240_89970515_89970557_89971731_89971862_89972816
ENSMUST00000239083.2	chr9	+	3558	20	FSM	ENSMUSG00000025240.11	ENSMUST00000026270.9	3558	20	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_14	24.7475900502736	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCTGTTGGTACTGTTTCT	NA	False	NA	19	True	AATAAA	-20	NA	123358823	123421665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_123358987_123371408_123371507_123376048_123376124_123377926_123378055_123381732_123381883_123388289_123388350_123389630_123389665_123395455_123395558_123397988_123398075_123399013_123399101_123399561_123399631_123406041_123406122_123408013_123408113_123411312_123411452_123414151_123414222_123414349_123414423_123415408_123415503_123415626_123415720_123416609_123416668_123419865
ENSMUST00000239099.2	chr14	-	880	5	FSM	ENSMUSG00000021951.8	ENSMUST00000239099.2	880	5	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_4	52.3115665986023	2247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGTCATGAGGTTGAGA	NA	False	NA	-8	True	AATAAA	-20	NA	57809069	57787053	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_-_57787337_57787818_57788100_57795490_57795574_57803378_57803542_57808999
ENSMUST00000239124.2	chr6	-	1008	2	FSM	ENSMUSG00000057103.12	ENSMUST00000239124.2	1008	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCTAATGCATGTGATG	9874	False	NA	NA	False	NA	NA	NA	85892659	85887138	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_85888003_85892515
ENSMUST00000239184.2	chr9	-	1104	4	FSM	ENSMUSG00000097195.11	ENSMUST00000239184.2	1104	4	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	276.362483384091	4052	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359
ENSMUST00000239192.2	chr9	-	1012	5	FSM	ENSMUSG00000097195.11	ENSMUST00000239192.2	1012	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	476.290090176145	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTCAATTGCAAATATTTA	NA	False	NA	-23	True	AATAAA	-24	NA	88404986	88403118	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88403770_88403970_88404029_88404359_88404435_88404536_88404682_88404903
ENSMUST00000239219.2	chr9	-	1636	2	FSM	ENSMUSG00000097195.11	ENSMUST00000239219.2	1636	2	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	0	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88403502_88403702
ENSMUST00000239226.2	chr11	+	1257	5	FSM	ENSMUSG00000020812.19	ENSMUST00000239226.2	1257	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	28.7347785792757	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTAGCATTGTGGGTAT	NA	False	NA	3	True	AATAAA	-16	NA	116562500	116566624	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566333
ENSMUST00000239240.2	chr19	+	1988	11	FSM	ENSMUSG00000024776.19	ENSMUST00000239240.2	1988	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	14.1918990977247	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCGGTTGTCACATTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	34169628	34217733	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_+_34169996_34197586_34197667_34203941_34204160_34207492_34207569_34208830_34208927_34211360_34211719_34212609_34212735_34213675_34213814_34216175_34216289_34216902_34217003_34217416
ENSMUST00000239253.2	chr9	-	1781	2	FSM	ENSMUSG00000097195.11	ENSMUST00000239253.2	1781	2	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_1	0	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATATTTATTCAATTCT	NA	False	NA	-14	True	AATAAA	-33	NA	88404992	88403109	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88404435_88404536
ENSMUST00000239278.2	chr9	-	1534	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239278.2	1534	3	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	178	629	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88403502_88403702_88404435_88404536
ENSMUST00000239281.2	chr11	+	857	6	FSM	ENSMUSG00000020812.19	ENSMUST00000239281.2	857	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	61.1901952930369	1321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTAGCATTGTGGGTATA	NA	False	NA	4	True	AATAAA	-17	NA	116562513	116566625	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566314
ENSMUST00000239284.2	chr9	-	1533	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239284.2	1533	3	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_1	392.5	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404943	88403107	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88403770_88403970_88404435_88404536
ENSMUST00000239285.2	chr9	-	869	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239285.2	869	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	417	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88403502_88403702_88403770_88404536
ENSMUST00000239288.2	chr2	-	1233	12	FSM	ENSMUSG00000027406.14	ENSMUST00000239288.2	1233	12	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	222.733469301557	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACTATCTGGTTTTGTG	NA	False	NA	NA	False	AATAAA	-11	NA	130126381	130121236	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_130121358_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
ENSMUST00000239327.2	chr9	-	705	5	FSM	ENSMUSG00000097195.11	ENSMUST00000239327.2	705	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	336.085089672244	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404536_88404682_88404903
ENSMUST00000239344.2	chr9	-	1437	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239344.2	1437	3	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	214.5	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404943	88403104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88403502_88403702_88403770_88403970
ENSMUST00000239365.2	chr9	-	809	6	FSM	ENSMUSG00000097195.11	ENSMUST00000239365.2	809	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	430.698688180032	5278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404970	88403104	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404682_88404903
ENSMUST00000239377.2	chr9	-	913	4	FSM	ENSMUSG00000097195.11	ENSMUST00000239377.2	913	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	338.103534438787	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTCAATTGCAAATATTTA	NA	False	NA	-23	True	AATAAA	-24	NA	88404941	88403118	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404536
ENSMUST00000239379.2	chr9	-	1623	2	FSM	ENSMUSG00000097195.11	ENSMUST00000239379.2	1623	2	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_1	0	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTCAATTGCAAATATTTA	NA	False	NA	-23	True	AATAAA	-24	NA	88404942	88403118	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88403770_88403970
ENSMUST00000239397.2	chr6	+	1287	8	Antisense	novelGene_ENSMUSG00000030246.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4900	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGAAGGAGGAGGAGGAG	NA	False	NA	NA	False	NA	NA	NA	142435977	142453669	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_chr6_+_142436331_142438218_142438343_142439825_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
ENSMUST00000239398.2	chr2	-	3565	26	FSM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_25	70.0256410181299	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTGAGTAATAGTTGAAA	NA	False	NA	NA	False	AATATA	-37	NA	53081199	53028486	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
ENSMUST00000239401.2	chr10	+	1101	2	FSM	ENSMUSG00000020308.8	ENSMUST00000239401.2	1101	2	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_1	0	897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCCTTGCTGGTCACCT	8006	False	NA	10	True	AATAAA	-12	NA	79505243	79511960	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr10_+_79505618_79511233
ENSMUST00000239402.2	chr12	+	2125	13	FSM	ENSMUSG00000020571.14	ENSMUST00000239402.2	2125	13	0	0	0	0	multi-exon	FALSE	canonical	3	2590	junction_6	180.731134715509	16359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACGTCTGTGATTATCTTC	NA	False	NA	NA	False	AATAAA	-12	NA	17316595	17334771	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
ENSMUST00000239403.2	chr14	+	2406	7	FSM	ENSMUSG00000040997.15	ENSMUST00000239403.2	2406	7	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_1	38.1200588783502	319	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACTGTTTAATATTGAT	NA	False	NA	16	True	AATAAA	-23	NA	54496688	54506626	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr14_+_54496777_54499082_54499172_54500107_54500481_54500625_54500781_54502737_54502850_54504451_54504639_54505224
ENSMUST00000239417.2	chr9	-	1242	4	FSM	ENSMUSG00000032062.4	ENSMUST00000239417.2	1242	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	2.16024689946929	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGATTGATTGTTCCTG	2131	False	NA	NA	False	AATAAA	-17	NA	50657821	50650990	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_50652050_50652595_50652661_50653560_50653599_50657741
ENSMUST00000239430.2	chr17	-	1442	9	FSM	ENSMUSG00000023919.10	ENSMUST00000087114.5	1942	9	496	4	496	-4	multi-exon	FALSE	canonical	3	128	junction_2	14.1283181943216	703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCTGATGTGTGAGTAG	NA	False	NA	-5	True	AATAAA	-23	NA	41245442	41233945	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr17_-_41234508_41235179_41235258_41235392_41235513_41238029_41238160_41240904_41240971_41242540_41242668_41243686_41243742_41243971_41244107_41245273
ENSMUST00000239432.2	chr6	-	1601	7	FSM	ENSMUSG00000023456.17	ENSMUST00000239432.2	1601	7	0	0	0	0	multi-exon	FALSE	canonical	3	1828	junction_3	39.1652482012647	17888	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAACCTCTTTGTCCCAG	NA	False	NA	-23	True	AATACA	-16	NA	124791259	124787554	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
ENSMUST00000239436.2	chr8	+	1897	6	FSM	ENSMUSG00000031532.8	ENSMUST00000239436.2	1897	6	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	37.2633868562695	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCGTGTTTCGTGTGTGGT	NA	False	NA	33	True	AATAAA	-40	NA	34621716	34637999	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr8_+_34621991_34628348_34628528_34632294_34632695_34634872_34635012_34635610_34635766_34637249
ENSMUST00000239441.2	chrX	-	2648	6	FSM	ENSMUSG00000039201.11	ENSMUST00000239441.2	2648	6	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_4	11.0018180315801	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTATTTCTCTATTTC	NA	False	NA	-7	True	NA	NA	NA	8042420	8020710	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_8022306_8022554_8022744_8022889_8023018_8038976_8039132_8040439_8040550_8041949
ENSMUST00000239458.2	chrX	-	1625	8	FSM	ENSMUSG00000019088.15	ENSMUST00000239458.2	1625	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	3.01018678652935	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGTATGCTTAATTCAAT	NA	False	NA	NA	False	AATAAA	-17	NA	73325342	73316822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_-_73317298_73317383_73317633_73317711_73317825_73317973_73318075_73320084_73320163_73320251_73320341_73320644_73320949_73325126
ENSMUST00000239462.2	chr9	-	3112	28	FSM	ENSMUSG00000032422.19	ENSMUST00000239462.2	3112	28	0	0	0	0	multi-exon	TRUE	canonical	3	141	junction_13	28.9754164757839	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTATTTACTGTCTTGA	NA	False	NA	1	True	AATAAA	-43	NA	88321004	88258799	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
ENSMUST00000239472.2	chr9	+	988	1	FSM	ENSMUSG00000118653.2	ENSMUST00000239472.2	988	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3901	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAAACATATGGT	NA	False	NA	NA	False	AATAAA	-33	NA	56344740	56345728	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr9_+_56344700_56345700
ENSMUST00000239473.2	chr5	+	1813	7	FSM	ENSMUSG00000029344.16	ENSMUST00000239473.2	1813	7	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	59.7847992571876	525	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112424572	112463221	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr5_+_112424638_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
ENSMUST00000239499.2	chr11	-	1771	14	FSM	ENSMUSG00000014195.17	ENSMUST00000239499.2	1771	14	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_11	720.895014063612	2051	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	5919	False	NA	-21	True	AATAAA	-15	NA	100510457	100473643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490032_100490136_100492553_100492643_100510353
ENSMUST00000239522.1	chr13	-	1567	4	FSM	ENSMUSG00000118666.1	ENSMUST00000239522.1	1567	4	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATCAGTGTTGTAAAGCA	9194	False	NA	NA	False	NA	NA	NA	66431965	66428949	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr13_-_66429747_66429830_66430407_66431570_66431632_66431832
ENSMUST00000239523.1	chrX	+	868	6	FSM	ENSMUSG00000095180.11	ENSMUST00000239523.1	868	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	1588.16578479704	7135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTGATTCGAGTAATAT	9192	False	NA	20	True	ATTAAA	-17	NA	36892322	36897311	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_36892366_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
ENSMUST00000239524.1	chrX	+	766	2	FSM	ENSMUSG00000095180.11	ENSMUST00000239524.1	766	2	0	0	0	0	multi-exon	FALSE	canonical	3	3777	junction_1	0	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTAGTGATTCGAGTAA	NA	False	NA	17	True	ATTAAA	-14	NA	36894047	36897308	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chrX_+_36894547_36897041
ENSMUST00000239527.1	chr19	-	3140	17	FSM	ENSMUSG00000118668.1	ENSMUST00000239527.1	3140	17	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_16	8.80961832317383	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGATCTGTGGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	6818004	6806577	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr19_-_6807508_6807682_6807847_6807954_6808115_6808358_6808554_6808641_6808816_6809135_6809230_6809318_6809453_6809623_6809753_6812468_6812634_6814694_6814846_6814947_6815052_6815123_6815205_6815422_6815531_6816619_6816736_6816827_6817047_6817701_6817774_6817860
ENSMUST00000239537.1	chr16	+	1604	4	FSM	ENSMUSG00000118669.2	ENSMUST00000239537.1	1604	4	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_1	37.8505834389203	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTATAGTTTTTCCTTGTT	NA	False	NA	NA	False	GATAAA	-20	NA	18210447	18217361	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr16_+_18210578_18214823_18214983_18215161_18215692_18216576
ENSMUST00000239600.1	chr11	+	215	1	FSM	ENSMUSG00000119761.1	ENSMUST00000239600.1	215	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	341	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGGTTTTATTTTACATGT	NA	False	NA	NA	False	NA	NA	NA	87362193	87362408	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_87362200_87362400
ENSMUST00000240535.1	chr11	+	191	1	FSM	ENSMUSG00000119776.1	ENSMUST00000240535.1	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	555	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGGAGTAAAGTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	101518191	101518382	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr11_+_101518200_101518400
ENSMUST00020183000.1	chr6	-	141	1	FSM	ENSMUSG00002076169.1	ENSMUST00020183000.1	141	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35755	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCCAGCTCCAGGATCTC	NA	False	NA	NA	False	NA	NA	NA	136785681	136785540	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_chr6_-_136785500_136785700
SIRV101	SIRV1	-	1561	6	FSM	SIRV1A	SIRV101	1561	6	0	0	0	0	multi-exon	FALSE	canonical	3	1499	junction_5	1975.53128044078	24447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10786	1000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10444
SIRV102	SIRV1	-	1300	4	FSM	SIRV1A	SIRV102	1300	4	0	0	0	0	multi-exon	FALSE	canonical	3	4191	junction_1	833.052752764727	5838	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTGAATCGATGCATAC	NA	False	NA	NA	False	NA	NA	NA	10366	1006	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV1_-_1485_6337_6814_7552_7815_10282
SIRV103	SIRV1	-	1363	6	FSM	SIRV1A	SIRV103	1363	6	0	0	0	0	multi-exon	FALSE	canonical	3	1304	junction_5	2022.74937646758	18835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10791	1000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10647
SIRV105	SIRV1	-	670	5	FSM	SIRV1A	SIRV105	670	5	0	0	0	0	multi-exon	FALSE	canonical	3	1547	junction_4	2187.81237769604	14794	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTGGAAGTCAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	10640	6449	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV1_-_6474_6560_6814_7552_7815_10282_10367_10593
SIRV106	SIRV1	-	973	3	FSM	SIRV1A	SIRV106	973	3	0	0	0	0	multi-exon	FALSE	canonical	2	497	junction_2	204	8684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10786	1000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV1_-_1485_7552_7809_10553
SIRV107	SIRV1	-	744	3	FSM	SIRV1A	SIRV107	744	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAGGCGCAAGGTACAT	NA	False	NA	NA	False	GATAAA	-18	NA	11643	10647	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV1_-_10792_10882_11243_11403
SIRV108	SIRV1	+	702	3	FSM	SIRV1B	SIRV108	702	3	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	13	6271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAAGACATAGGGCGTGG	NA	False	NA	NA	False	NA	NA	NA	10582	11606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV1_+_10792_10897_11188_11403
SIRV109	SIRV1	+	464	3	FSM	SIRV1B	SIRV109	464	3	0	0	0	0	multi-exon	FALSE	canonical	3	3494	junction_2	198.5	10798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTTCGGCTAATCATGT	NA	False	NA	NA	False	NA	NA	NA	10711	11643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV1_+_10792_10882_11058_11434
SIRV1A_10583_11643_1	SIRV1	-	739	3	NIC	SIRV1A	novel	744	3	NA	NA	0	65	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	7466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACAAGCCCGTCGCCTCTA	NA	False	NA	NA	False	NA	NA	NA	11643	10582	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_SIRV1_-_10792_10897_11188_11403
SIRV1B_1001_10787_1	SIRV1	+	1359	6	NIC	SIRV1B	novel	702	3	NA	NA	-9582	-819	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	18771	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACGTGTCATGTCCAACTA	NA	False	NA	NA	False	NA	NA	NA	1000	10787	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_SIRV1_+_1485_6337_6474_6560_6814_7552_7815_10282_10367_10647
SIRV1B_6450_10641_1	SIRV1	+	671	5	NIC	SIRV1B	novel	702	3	NA	NA	-4133	-965	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	14766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACACCTTCTGTTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	6449	10641	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_SIRV1_+_6474_6560_6814_7552_7815_10282_10367_10593
SIRV201	SIRV2	-	2051	11	FSM	SIRV2A	SIRV201	2051	11	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_6	997.649657946115	16791	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCCCAACGTGGCATGCG	NA	False	NA	NA	False	NA	NA	NA	5907	1000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3375_3665_3826_3966_4095_4338_4480_4687_4801_5788
SIRV202	SIRV2	-	1971	11	FSM	SIRV2A	SIRV202	1971	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_6	1003.16519576788	16839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGCTCTATAGCTGTATC	NA	False	NA	NA	False	NA	NA	NA	5911	1035	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3326_3665_3826_3966_4095_4338_4480_4687_4801_5788
SIRV203	SIRV2	-	686	5	FSM	SIRV2A	SIRV203	686	5	0	0	0	0	multi-exon	FALSE	canonical	3	2087	junction_4	259.923065540556	13949	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTGACGTGGACGTTTC	NA	False	NA	NA	False	NA	NA	NA	5895	3665	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV2_-_3826_3966_4095_4338_4480_4687_4801_5751
SIRV204	SIRV2	-	740	3	FSM	SIRV2A	SIRV204	740	3	0	0	0	0	multi-exon	FALSE	canonical	3	2423	junction_1	198	21103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTTATCCTATATCGGA	NA	False	NA	NA	False	NA	NA	NA	4732	3643	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV2_-_3826_3966_4480_4687
SIRV205	SIRV2	+	523	1	FSM	SIRV2B	SIRV205	523	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4428	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCGTCTACCGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	1108	1631	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV2_+_1100_1600
SIRV206	SIRV2	+	424	1	FSM	SIRV2C	SIRV206	424	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14769	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGAACACACTTCCATCCAC	NA	False	NA	NA	False	NA	NA	NA	4033	4457	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV2_+_4000_4500
SIRV2B_1001_5895_1	SIRV2	+	1990	11	Genic_Genomic	SIRV2C_SIRV2B	novel	523	1	NA	NA	-108	1438	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11538	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGATAAATACACCAACTACC	NA	False	NA	NA	False	NA	NA	NA	1000	5895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV2_+_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3326_3665_3826_3966_4095_4338_4480_4687_4801_5788
SIRV2B_1001_5895_2	SIRV2	+	2039	11	Genic_Genomic	SIRV2C_SIRV2B	novel	523	1	NA	NA	-108	1438	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11547	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGATAAATACACCAACTACC	NA	False	NA	NA	False	NA	NA	NA	1000	5895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV2_+_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3375_3665_3826_3966_4095_4338_4480_4687_4801_5788
SIRV2B_1109_5895_1	SIRV2	+	1882	11	Genic_Genomic	SIRV2C_SIRV2B	novel	523	1	NA	NA	0	1438	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9367	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGATAAATACACCAACTACC	NA	False	NA	NA	False	NA	NA	NA	1108	5895	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV2_+_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3326_3665_3826_3966_4095_4338_4480_4687_4801_5788
SIRV301	SIRV3	+	2467	5	FSM	SIRV3A	SIRV301	2467	5	0	0	0	0	multi-exon	FALSE	canonical	3	1234	junction_3	576.603416569829	4886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTAACGTCTCGTAAGAC	NA	False	NA	NA	False	NA	NA	NA	1944	8939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV3_+_2006_4568_4780_6057_7989_8127_8208_8755
SIRV302	SIRV3	+	1807	2	FSM	SIRV3A	SIRV302	1807	2	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	0	2534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1963	7822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV3_+_2006_6057
SIRV303	SIRV3	+	2018	3	FSM	SIRV3A	SIRV303	2018	3	0	0	0	0	multi-exon	FALSE	canonical	3	1857	junction_1	482	3414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1963	7822	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV3_+_2006_4568_4780_6057
SIRV304	SIRV3	+	1083	8	FSM	SIRV3A	SIRV304	1083	8	0	0	0	0	multi-exon	FALSE	canonical	3	1134	junction_6	907.203057620014	6815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGTTAACGTCTCGTAAG	NA	False	NA	NA	False	NA	NA	NA	1963	8937	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV3_+_2006_4003_4081_4568_4780_6057_6334_7270_7367_7872_7989_8124_8208_8755
SIRV305	SIRV3	+	436	3	FSM	SIRV3A	SIRV305	436	3	0	0	0	0	multi-exon	FALSE	canonical	3	1609	junction_2	828.5	10992	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAATCTTAATAGACGATT	NA	False	NA	NA	False	NA	NA	NA	4003	6718	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV3_+_4081_4568_4780_6570
SIRV306	SIRV3	+	2373	3	FSM	SIRV3A	SIRV306	2373	3	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_2	1218.5	3508	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACCTAACAGTAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	1944	8292	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV3_+_2006_4003_4081_6057
SIRV307	SIRV3	+	779	5	FSM	SIRV3A	SIRV307	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	1252	junction_4	794.143052289699	4874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTAACGTCTCGTAAGAC	NA	False	NA	NA	False	NA	NA	NA	1963	8939	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV3_+_2006_4003_4081_4574_4775_6057_6334_8755
SIRV308	SIRV3	-	479	3	FSM	SIRV3B	SIRV308	479	3	0	0	0	0	multi-exon	FALSE	canonical	3	5391	junction_1	17	14862	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTATTTGTATGGCGGA	NA	False	NA	NA	False	NA	NA	NA	1982	1000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV3_-_1168_1532_1765_1902
SIRV309	SIRV3	-	796	3	FSM	SIRV3C	SIRV309	796	3	0	0	0	0	multi-exon	FALSE	canonical	3	1394	junction_2	16	2188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTCAAATATCTGTGTC	NA	False	NA	NA	False	CATAAA	-21	NA	9943	8797	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV3_-_8976_9189_9299_9434
SIRV310	SIRV3	-	589	3	FSM	SIRV3C	SIRV310	589	3	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_2	66	11725	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTTGGTTTTGGGTACT	NA	False	NA	NA	False	NA	NA	NA	9914	8759	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV3_-_8967_9189_9325_9667
SIRV3D_4004_6718_1	SIRV3	-	430	3	Genic_Genomic	SIRV3D	novel	161	1	NA	NA	-1956	598	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2653	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCATAGAACAATATGTTTT	NA	False	NA	NA	False	NA	NA	NA	6718	4003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV3_-_4081_4574_4780_6570
SIRV3D_4004_6718_2	SIRV3	-	431	3	Genic_Genomic	SIRV3D	novel	161	1	NA	NA	-1956	598	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1296	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCATAGAACAATATGTTTT	NA	False	NA	NA	False	NA	NA	NA	6718	4003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV3_-_4069_4561_4780_6570
SIRV3D_4004_6718_4	SIRV3	-	431	3	Genic_Genomic	SIRV3D	novel	161	1	NA	NA	-1956	598	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3678	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCATAGAACAATATGTTTT	NA	False	NA	NA	False	NA	NA	NA	6718	4003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV3_-_4081_4568_4775_6570
SIRV3D_4004_6718_5	SIRV3	-	436	3	Genic_Genomic	SIRV3D	novel	161	1	NA	NA	-1956	598	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6338	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCATAGAACAATATGTTTT	NA	False	NA	NA	False	NA	NA	NA	6718	4003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV3_-_4087_4574_4780_6570
SIRV3D_4004_6718_6	SIRV3	-	424	3	Genic_Genomic	SIRV3D	novel	161	1	NA	NA	-1956	598	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1822	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCATAGAACAATATGTTTT	NA	False	NA	NA	False	NA	NA	NA	6718	4003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV3_-_4081_4568_4775_6577
SIRV3D_4004_6718_7	SIRV3	-	431	3	Genic_Genomic	SIRV3D	novel	161	1	NA	NA	-1956	598	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6414	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCATAGAACAATATGTTTT	NA	False	NA	NA	False	NA	NA	NA	6718	4003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV3_-_4076_4568_4780_6570
SIRV3D_4004_6718_8	SIRV3	-	438	3	Genic_Genomic	SIRV3D	novel	161	1	NA	NA	-1956	598	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4618	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCATAGAACAATATGTTTT	NA	False	NA	NA	False	NA	NA	NA	6718	4003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV3_-_4076_4561_4780_6570
SIRV403	SIRV4	-	670	4	FSM	SIRV4A	SIRV403	670	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3065.46367708958	46960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGATATTTAGAGCGTA	NA	False	NA	NA	False	NA	NA	NA	15122	8322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV4_-_8373_8629_8991_13672_13829_15019
SIRV404	SIRV4	-	592	4	FSM	SIRV4A	SIRV404	592	4	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_3	2787.93595494747	25893	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGATATTTAGAGCGTA	NA	False	NA	NA	False	NA	NA	NA	14623	8322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV4_-_8373_8629_8991_13672_13823_14592
SIRV405	SIRV4	-	626	2	FSM	SIRV4A	SIRV405	626	2	0	0	0	0	multi-exon	FALSE	canonical	3	7498	junction_1	0	18721	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTCTCTTTTCAGCAAG	NA	False	NA	NA	False	NA	NA	NA	13937	8629	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV4_-_8991_13672
SIRV406	SIRV4	-	617	2	FSM	SIRV4B	SIRV406	617	2	0	0	0	0	multi-exon	FALSE	canonical	3	2584	junction_1	0	4834	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTTAAAAATAGCCTGT	NA	False	NA	NA	False	NA	NA	NA	5158	3637	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV4_-_4104_5007
SIRV408	SIRV4	-	570	5	FSM	SIRV4A	SIRV408	570	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2658.88059152719	14556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTTGATATTTAGAGCGT	NA	False	NA	NA	False	NA	NA	NA	15122	8323	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV4_-_8373_8629_8748_8846_8991_13672_13829_15019
SIRV409	SIRV4	+	1567	3	FSM	SIRV4C	SIRV409	1567	3	0	0	0	0	multi-exon	FALSE	canonical	3	1019	junction_2	11.5	7590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATTGTAACCTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	1000	3403	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV4_+_1347_1678_1886_2389
SIRV410	SIRV4	+	950	2	FSM	SIRV4C	SIRV410	950	2	0	0	0	0	multi-exon	FALSE	canonical	3	1621	junction_1	0	5288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTATATGTTGTTGCTG	NA	False	NA	NA	False	NA	NA	NA	1455	2771	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV4_+_1886_2251
SIRV4A_8323_15123_1	SIRV4	-	572	5	NNC	SIRV4A	novel	570	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2658.88059152719	13743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGATATTTAGAGCGTA	NA	False	NA	NA	False	NA	NA	NA	15123	8322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_SIRV4_-_8373_8629_8748_8846_8991_13672_13823_15013
SIRV4A_8323_15123_2	SIRV4	-	671	4	NNC	SIRV4A	novel	592	4	NA	NA	-1	0	intron_retention	FALSE	non_canonical	0	0	junction_3	3065.46367708958	44514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGATATTTAGAGCGTA	NA	False	NA	NA	False	NA	NA	NA	15123	8322	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_SIRV4_-_8373_8629_8991_13672_13823_15013
SIRV501	SIRV5	+	1890	17	FSM	SIRV5A	SIRV501	1890	17	0	0	0	0	multi-exon	FALSE	canonical	3	1808	junction_14	3064.59256060247	2170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1056	10991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV5_+_1150_1987_2034_2119_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
SIRV502	SIRV5	+	1984	18	FSM	SIRV5A	SIRV502	1984	18	0	0	0	0	multi-exon	FALSE	canonical	3	681	junction_4	3430.92271124242	3649	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTTTACCGCCAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	1019	10989	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2489_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
SIRV503	SIRV5	+	526	3	FSM	SIRV5A	SIRV503	526	3	0	0	0	0	multi-exon	FALSE	canonical	3	1532	junction_2	5146.5	9686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTCGCTTGCCCAATTG	NA	False	NA	NA	False	NA	NA	NA	8201	11142	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV5_+_8586_10858_10992_11133
SIRV504	SIRV5	+	2473	1	FSM	SIRV5A	SIRV504	2473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2173	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	11133	13606	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV5_+_11100_13600
SIRV505	SIRV5	+	2029	16	FSM	SIRV5A	SIRV505	2029	16	0	0	0	0	multi-exon	FALSE	canonical	3	5578	junction_10	1970.92572045614	5136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1000	10991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
SIRV506	SIRV5	+	552	2	FSM	SIRV5A	SIRV506	552	2	0	0	0	0	multi-exon	FALSE	canonical	3	11478	junction_1	0	6372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTACGGCCAGTTTAGC	NA	False	NA	NA	False	AATGAA	-17	NA	1008	2398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV5_+_1150_1987
SIRV507	SIRV5	+	533	6	FSM	SIRV5A	SIRV507	533	6	0	0	0	0	multi-exon	FALSE	canonical	3	3871	junction_1	2708.37786137754	17284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCGTAAGTGGTCAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	1027	3598	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV5_+_1150_1925_2034_2119_2157_2270_2316_3298_3405_3483
SIRV508	SIRV5	+	2085	17	FSM	SIRV5A	SIRV508	2085	17	0	0	0	0	multi-exon	FALSE	canonical	3	2297	junction_10	2773.74385702339	5916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1008	10991	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
SIRV509	SIRV5	+	885	4	FSM	SIRV5A	SIRV509	885	4	0	0	0	0	multi-exon	FALSE	canonical	3	1024	junction_3	4608.45413946538	9260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	AGTAAA	-10	NA	8315	11866	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV5_+_8382_8454_8586_10858_10992_11311
SIRV510	SIRV5	+	2474	18	FSM	SIRV5A	SIRV510	2474	18	0	0	0	0	multi-exon	FALSE	canonical	3	1532	junction_17	2924.81329602575	11234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAGTAACCTTGGTAACT	NA	False	NA	NA	False	AGTAAA	-11	NA	1028	11867	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
SIRV512	SIRV5	-	229	1	FSM	SIRV5B	SIRV512	229	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1119	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACATGTTAGACCTTTA	NA	False	NA	NA	False	AATATA	-23	NA	2406	2177	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV5_-_2200_2400
SIRV5A_1028_2398_1	SIRV5	+	528	2	NNC	SIRV5A	novel	552	2	NA	NA	0	0	intron_retention	FALSE	canonical	2	386	junction_1	0	5653	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTACGGCCAGTTTAGC	NA	False	NA	NA	False	AATGAA	-17	NA	1027	2398	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NNC_SIRV5_+_1150_1992
SIRV5A_8202_11007_1	SIRV5	+	460	3	ISM	SIRV5A	SIRV509	885	4	-114	859	0	16	5prime_fragment	FALSE	canonical	3	9266	junction_1	1279.5	1250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAGCAAGACCTCTTCTC	NA	False	NA	NA	False	NA	NA	NA	8201	11007	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_SIRV5_+_8382_8454_8586_10858
SIRV5B_1028_11007_1	SIRV5	-	1994	18	Genic_Genomic	SIRV5B	novel	229	1	NA	NA	-8601	1150	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGTCTTGCAGTATGCT	NA	False	NA	NA	False	NA	NA	NA	11007	1027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV5_-_1150_1987_2034_2119_2157_2270_2489_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
SIRV5B_1028_3598_1	SIRV5	-	539	6	Genic_Genomic	SIRV5B	novel	229	1	NA	NA	-1192	1150	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGTCTTGCAGTATGCT	NA	False	NA	NA	False	NA	NA	NA	3598	1027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV5_-_1150_1919_2034_2119_2157_2270_2316_3298_3405_3483
SIRV5B_1028_3598_2	SIRV5	-	530	6	Genic_Genomic	SIRV5B	novel	229	1	NA	NA	-1192	1150	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGTCTTGCAGTATGCT	NA	False	NA	NA	False	NA	NA	NA	3598	1027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV5_-_1150_1925_2034_2119_2163_2279_2316_3298_3405_3483
SIRV5B_1028_3598_3	SIRV5	-	536	6	Genic_Genomic	SIRV5B	novel	229	1	NA	NA	-1192	1150	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGTCTTGCAGTATGCT	NA	False	NA	NA	False	NA	NA	NA	3598	1027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV5_-_1150_1925_2034_2119_2163_2273_2316_3298_3405_3483
SIRV5B_1028_3598_4	SIRV5	-	528	5	Genic_Genomic	SIRV5B	novel	229	1	NA	NA	-1192	1150	multi-exon	FALSE	non_canonical	0	0	junction_1	0	718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGTCTTGCAGTATGCT	NA	False	NA	NA	False	NA	NA	NA	3598	1027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV5_-_1150_1925_2069_2273_2316_3298_3405_3483
SIRV5B_1028_3598_5	SIRV5	-	531	5	Genic_Genomic	SIRV5B	novel	229	1	NA	NA	-1192	1150	multi-exon	FALSE	non_canonical	0	0	junction_1	0	695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGTCTTGCAGTATGCT	NA	False	NA	NA	False	NA	NA	NA	3598	1027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV5_-_1150_1925_2069_2270_2316_3298_3405_3483
SIRV5B_1028_3598_6	SIRV5	-	524	6	Genic_Genomic	SIRV5B	novel	229	1	NA	NA	-1192	1150	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5299	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGTCTTGCAGTATGCT	NA	False	NA	NA	False	NA	NA	NA	3598	1027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV5_-_1150_1925_2034_2119_2157_2279_2316_3298_3405_3483
SIRV5B_1028_3598_7	SIRV5	-	526	6	Genic_Genomic	SIRV5B	novel	229	1	NA	NA	-1192	1150	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3809	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGTCTTGCAGTATGCT	NA	False	NA	NA	False	NA	NA	NA	3598	1027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV5_-_1150_1925_2034_2126_2157_2270_2316_3298_3405_3483
SIRV5B_1028_3598_8	SIRV5	-	510	5	Genic_Genomic	SIRV5B	novel	229	1	NA	NA	-1192	1150	multi-exon	FALSE	non_canonical	0	0	junction_1	0	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGTCTTGCAGTATGCT	NA	False	NA	NA	False	NA	NA	NA	3598	1027	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV5_-_1150_1925_2048_2270_2316_3298_3405_3483
SIRV601	SIRV6	-	1435	9	Genic_Genomic	SIRV6C_SIRV6B	novel	276	1	NA	NA	-9279	544	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16722	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTCCCTCTTCGGAAAG	NA	False	NA	NA	False	NA	NA	NA	11826	1000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV6_-_1187_1468_1535_1640_1736_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
SIRV602	SIRV6	+	574	8	FSM	SIRV6A	SIRV602	574	8	0	0	0	0	multi-exon	FALSE	canonical	3	8561	junction_3	5767.41567350754	11465	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGCCTAATTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	1124	11279	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_2780_2829_3106_3165_10724_10819_11031_11109_11205
SIRV603	SIRV6	+	1969	1	FSM	SIRV6A	SIRV603	1969	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2781	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAGATTTCGACCGAA	NA	False	NA	NA	False	ATTAAA	-26	NA	8999	10968	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV6_+_9000_11000
SIRV604	SIRV6	+	1537	10	FSM	SIRV6A	SIRV604	1537	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	9140.21704229429	14923	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATACTTAGTTCAATCTT	NA	False	NA	NA	False	NA	NA	NA	1087	11837	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11034_11109_11205
SIRV605	SIRV6	+	1088	9	FSM	SIRV6A	SIRV605	1088	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	8239.38325968637	7449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAGAGCAATCAACTCAC	NA	False	NA	NA	False	NA	NA	NA	1130	11331	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031
SIRV606	SIRV6	-	545	4	Genic_Genomic	SIRV6C	novel	189	1	NA	NA	-8241	73	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20018	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACGACCTACTAAACTTC	NA	False	NA	NA	False	NA	NA	NA	10788	2285	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV6_-_2621_2740_2829_3106_3165_10724
SIRV607	SIRV6	-	574	4	Genic_Genomic	SIRV6C_SIRV6B	novel	276	1	NA	NA	7	414	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14666	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCCTGAAGGCGGCGCAA	NA	False	NA	NA	False	NA	NA	NA	2540	1130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV6_-_1187_1468_1736_1845_2027_2470
SIRV608	SIRV6	-	377	4	Antisense	novelGene_SIRV6A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14845	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTCGATTCACTAAAGTG	NA	False	NA	NA	False	NA	NA	NA	11270	3023	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_SIRV6_-_3165_10724_10819_11031_11109_11205
SIRV609	SIRV6	+	485	4	FSM	SIRV6A	SIRV609	485	4	0	0	0	0	multi-exon	FALSE	canonical	3	15063	junction_3	5493.41668626083	14597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACAAGTCAAGCCATTGC	NA	False	NA	NA	False	NA	NA	NA	1137	2120	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845
SIRV610	SIRV6	+	1163	5	FSM	SIRV6A	SIRV610	1163	5	0	0	0	0	multi-exon	FALSE	canonical	3	12902	junction_1	2966.72052736688	7710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTAAAATGGGGTTTGCC	NA	False	NA	NA	False	ATTAAA	-5	NA	2472	11690	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV6_+_2621_2740_2829_3106_3165_10724_11109_11205
SIRV611	SIRV6	+	454	3	FSM	SIRV6A	SIRV611	454	3	0	0	0	0	multi-exon	FALSE	canonical	3	2656	junction_1	12443	16036	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGGTGTTTATAGTTTA	NA	False	NA	NA	False	NA	NA	NA	1303	1950	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV6_+_1382_1468_1535_1640
SIRV612	SIRV6	+	1528	10	FSM	SIRV6A	SIRV612	1528	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	7772.9807349673	16454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGACCGGGAGTATACT	NA	False	NA	NA	False	NA	NA	NA	1087	11825	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
SIRV613	SIRV6	+	1311	6	FSM	SIRV6A	SIRV613	1311	6	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_2	9686.74001715748	9916	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAGACCGGGAGTATAC	NA	False	NA	NA	False	NA	NA	NA	3105	11824	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV6_+_3165_7104_7449_7805_7924_10724_10819_11031_11109_11205
SIRV614	SIRV6	+	459	5	FSM	SIRV6A	SIRV614	459	5	0	0	0	0	multi-exon	FALSE	canonical	3	2976	junction_3	7392.30118095847	12354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAAGACTGTATCGGAG	NA	False	NA	NA	False	AAAAAG	-17	NA	2516	10815	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV6_+_2621_2740_2829_3106_3165_7805_7924_10724
SIRV615	SIRV6	+	783	3	FSM	SIRV6A	SIRV615	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	18822	junction_2	2138	9929	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAAGAGCAATCAACTCA	NA	False	NA	NA	False	NA	NA	NA	10237	11330	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV6_+_10819_11031_11109_11205
SIRV616	SIRV6	+	531	4	FSM	SIRV6A	SIRV616	531	4	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_2	7304.14215816386	19588	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTGAAAAAGTAATAGTGC	NA	False	NA	NA	False	NA	NA	NA	2285	10788	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV6_+_2621_2740_2815_3106_3165_10724
SIRV617	SIRV6	-	276	1	FSM	SIRV6B	SIRV617	276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4904	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTCTACTTGGGCACCT	NA	False	NA	NA	False	NA	NA	NA	1820	1544	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV6_-_1500_1800
SIRV6B_1131_11270_1	SIRV6	-	559	8	Genic_Genomic	SIRV6B	novel	276	1	NA	NA	-9450	414	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10528	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCCTGAAGGCGGCGCAA	NA	False	NA	NA	False	NA	NA	NA	11270	1130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV6_-_1187_1468_1535_1640_1736_2780_2829_3106_3165_10724_10819_11031_11109_11205
SIRV6B_1131_11270_2	SIRV6	-	551	8	Genic_Genomic	SIRV6B	novel	276	1	NA	NA	-9450	414	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10011	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCCTGAAGGCGGCGCAA	NA	False	NA	NA	False	NA	NA	NA	11270	1130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV6_-_1187_1468_1527_1640_1736_2780_2829_3106_3165_10724_10819_11031_11109_11205
SIRV6B_1131_11826_1	SIRV6	-	1483	10	Genic_Genomic	SIRV6C_SIRV6B	novel	276	1	NA	NA	-9279	414	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10384	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCCTGAAGGCGGCGCAA	NA	False	NA	NA	False	NA	NA	NA	11826	1130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV6_-_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11034_11109_11205
SIRV6B_1131_11826_2	SIRV6	-	1486	10	Genic_Genomic	SIRV6C_SIRV6B	novel	276	1	NA	NA	-9279	414	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12197	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCCTGAAGGCGGCGCAA	NA	False	NA	NA	False	NA	NA	NA	11826	1130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV6_-_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
SIRV6B_1131_2120_1	SIRV6	-	487	4	Genic_Genomic	SIRV6B	novel	276	1	NA	NA	-300	414	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13168	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCCTGAAGGCGGCGCAA	NA	False	NA	NA	False	NA	NA	NA	2120	1130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV6_-_1187_1468_1535_1645_1736_1845
SIRV6B_1131_2120_2	SIRV6	-	484	4	Genic_Genomic	SIRV6B	novel	276	1	NA	NA	-300	414	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12469	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCCTGAAGGCGGCGCAA	NA	False	NA	NA	False	NA	NA	NA	2120	1130	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV6_-_1187_1468_1527_1640_1736_1845
SIRV6C_2517_11690_1	SIRV6	-	1119	5	Genic_Genomic	SIRV6C	novel	189	1	NA	NA	-9143	-158	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7429	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTTGGCACTTTAGCAAC	NA	False	NA	NA	False	NA	NA	NA	11690	2516	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Genic_Genomic_SIRV6_-_2621_2740_2829_3106_3165_10724_11109_11205
SIRV701	SIRV7	-	2462	5	FSM	SIRV7A	SIRV701	2462	5	0	0	0	0	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	13411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAGTGTTAATATGAATC	NA	False	NA	NA	False	TATAAA	-19	NA	147923	1003	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
SIRV702	SIRV7	-	2247	6	FSM	SIRV7A	SIRV702	2247	6	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_3	1351.00954844886	12337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	TATAAA	-22	NA	114916	1000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV7_-_2676_2993_3112_4095_4180_4725_4811_43028_43078_114680
SIRV703	SIRV7	-	2498	5	FSM	SIRV7A	SIRV703	2498	5	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_2	1651.92015167199	13480	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	TATAAA	-22	NA	147918	1000	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV7_-_2676_2993_3112_3809_3897_114680_114989_147608
SIRV704	SIRV7	-	428	3	FSM	SIRV7A	SIRV704	428	3	0	0	0	0	multi-exon	FALSE	canonical	3	4944	junction_1	1233	20444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTTCGTATTTGCTGCT	NA	False	NA	NA	False	ATTAAA	-33	NA	114738	55849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV7_-_56098_78841_78964_114680
SIRV706	SIRV7	+	949	5	Antisense	novelGene_SIRV7A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15525	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAGTAGTAAGAAAATCAGG	NA	False	NA	NA	False	NA	NA	NA	56031	147957	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	Antisense_SIRV7_+_56098_70883_70988_78841_78964_114680_114989_147608
SIRV708	SIRV7	-	889	6	FSM	SIRV7A	SIRV708	889	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1573.00102987887	8917	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATCCTAAGAGATCGAC	NA	False	NA	NA	False	NA	NA	NA	147957	56037	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	FSM_SIRV7_-_56098_70883_70988_78841_78909_78928_78964_114686_114961_147608
SIRV7A_55850_78964_1	SIRV7	-	371	2	ISM	SIRV7A	SIRV704	428	3	35774	0	35774	0	3prime_fragment	FALSE	canonical	3	4944	junction_1	0	3114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTTCGTATTTGCTGCT	NA	False	NA	NA	False	ATTAAA	-33	NA	78964	55849	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	ISM_SIRV7_-_56098_78841
SIRV7A_56032_147957_1	SIRV7	-	915	5	NIC	SIRV7A	novel	889	6	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_3	1736.72714825905	14900	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGAGATCGACGAAGTT	NA	False	NA	NA	False	NA	NA	NA	147957	56031	ES_captrap_ont	iso_detect_ref_ritchie_captrap_ont	NIC_SIRV7_-_56098_70883_70988_78841_78964_114686_114961_147608
